Citrus Sinensis ID: 006847

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
Protein Sequence
MVKERFFVSKNDNMYLEDGIDHEEPFCAEMEADENETGTPANEVHGFTSEGSEGSNVVFSREAPLISKESRISSGCSCSAKNLKSRRIIATDSDFATEKIGHEKKLSKSERVELGKMFQSAMSSHDWELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPAATYAVADSIARSDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGGGVLEEVSHGNSSWQFWNITSLHFWSNLLALVSKF
Secondary Structure (PSIPRED)
ccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHccccEEEHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHccccccHHHHHHHHHHccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccEccccccccccccccEEcccccccccccccEEEccccccccccEEEcccccccccccccccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHcHcccHHHHHHHHHHHHccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccEHcccccHHHEHHEHcHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHccccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvkerffvskndnmyledgidheepfcaemeadenetgtpanevhgftsegsegsnvvfsreapliskesrissgcscsaknlksrriiatdsdfatekighekklskSERVELGKMFQSAMSSHDWELAESLILladphtlnDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVTVMAQRLNERlqecngdevlkAEAGAKVQKFTEWALRCIGFhsrcndncdavshsSAVEIQLQLSAFKTFLDLagnqltgkdfteafdaacfpltlfsssfdpgwasgISATVIQGLLGLLveggadnvnQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFAShyckigtmeclveegnavaflGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAgersggsldGVAFLLhsdflgdpaatyAVADSiarsddegvapDLKVFLREHWSeaafldglkqgdVHYMNLLRIlkwgespiclrdlpgplrvaITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGGGVLeevshgnsswqfwNITSLHFWSNLLALVSKF
Flexible Loop (DISEMBL)
mvkerffvskndnmyledGIDHEEPFCAEMEADENETGTPANEVHGftsegsegsnvVFSREApliskesrissgcscsaknlksrriiatdsdfatekighekklskserVELGKMFQSAMSSHDWELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPAATYAVADSIARSDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGGGVLEEVSHGNSSWQFWNITSLHFWSNLLALVSKF
Low Complexity Region (SEG)
MVKERFFVSKNDNMYLEDGIDHEEPFCAEMEADENETGTPANEVHGFTSEGSEGSNVVFSREAPLISKESRISSGCSCSAKNLKSRRIIATDSDFATEKIGHEKKLSKSERVELGKMFQSAMSSHDWELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPAATYAVADSIARSDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGGGVLEEVSHGNSSWQFWNITSLHFWSNLLALVSKF
Disordered region (IsUnstruct)
****************************************************************************************************************************HDWELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPAATYAVADSIARSDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGGGVLEEVSHGNSSWQFWNITSLHFWSNLLALV***
Disordered Region (DISOPRED)
****RFF**KNDNM*************************************************************************************************VELGKMFQSAMSSHDWELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFHSRC******V**SSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEI*************GVAFLLHSDFLGDPAATYAVADSIAR*D**GVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLG**********NSSWQFWNITSLHFWSNLLALVSK*
Disordered Region (DISEMBL)
MVKERFFVSKNDNMYLEDGIDHEEPFCAEME********PANEVHGFTSEGSEGSNVVFSREAPLISKESRISSGCSCSAKNLKSRRIIATDSDFATEKIGHEKKLSKSERVELGKMFQSAMSSHDWELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPAATYAVADSIARSDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGGGVLEEVSHGNSSWQFWNITSLHFWSNLLALVSKF
Disordered Region (DISPRO)
*VKERFFVSKNDNMYLED****EEPFCAEMEA**********EVHG**********************************************************KLSKSERVELGKMFQSAMSSHDWELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFHSRCNDNC**VSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPAATYAVADSIARSDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGGGVLEEVSHGNSSWQFWNITSLHFWSNLLALVSKF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKERFFVSKNDNMYLEDGIDHEEPFCAEMEADENETGTPANEVHGFTSEGSEGSNVVFSREAPLISKESRISSGCSCSAKNLKSRRIIATDSDFATEKIGHEKKLSKSERVELGKMFQSAMSSHDWELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPAATYAVADSIARSDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGGGVLEEVSHGNSSWQFWNITSLHFWSNLLALVSKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	629	2.2.26 [Sep-21-2011]
Q9M1Y3	611	F-box/ankyrin repeat prot	yes	no	0.910	0.937	0.744	0.0

>sp|Q9M1Y3|SKI35_ARATH F-box/ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana GN=SKIP35 PE=1 SV=1

 Score =  869 bits (2246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/588 (74%), Positives = 489/588 (83%), Gaps = 15/588 (2%)

Query: 12  DNMYLEDGIDHEEPFCAEMEADENETGTPANEVHGFTSEGSEGSNVVFSREAPLISKESR 71
           D + L D +  +EPFC+EM+    ET   + +      EG EGS VVFSREAPLI K+S 
Sbjct: 8   DTINLSDQMYPDEPFCSEMK---TETIASSQKF-----EGGEGSKVVFSREAPLIGKDSA 59

Query: 72  -ISSG--CSCSAKNLKSRRIIATDSDFATEKIGHEKKLSKSERVELGKMFQSAMSSHDWE 128
             +SG  C CSAK L  +     D     E I  +KKL++ ER+ELG++FQ A++S DWE
Sbjct: 60  GTNSGECCGCSAKKLNFK---GDDDLVEKENIEQQKKLNRQERIELGRLFQGAVTSLDWE 116

Query: 129 LAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTS 188
           LAE LI LADP TLND LC+ LDS+WFL T+ E  G+TGLIKKII +GA+DFTRA LRTS
Sbjct: 117 LAERLIQLADPQTLNDLLCVGLDSVWFLSTKPEFQGITGLIKKIICHGAHDFTRATLRTS 176

Query: 189 FLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIG 248
           FLASCVSACQSRTMSL DTVTVMAQRL+ERLQECNGDE+LKAEAGAKVQKFTEWAL+CIG
Sbjct: 177 FLASCVSACQSRTMSLSDTVTVMAQRLHERLQECNGDEILKAEAGAKVQKFTEWALKCIG 236

Query: 249 FHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSS 308
           FHSRC    D VS +SA EI+LQLSAFK FLDLAGN L+G+DFTEAFDAACFPLTLFS+S
Sbjct: 237 FHSRCQGAKDRVSQNSAAEIELQLSAFKMFLDLAGNHLSGRDFTEAFDAACFPLTLFSNS 296

Query: 309 FDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVD 368
           FDPGWASG+SATVIQGLLG+LVEGGADNVNQCFLEASRFGSTELVR+LLQIAQRNSLDVD
Sbjct: 297 FDPGWASGMSATVIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRVLLQIAQRNSLDVD 356

Query: 369 VDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCL 428
           VDLALGFASHYCKIGTM+CLVEEGNA+AFLGPLMRAAERGCMQVVQWFVKRGCRDM+LCL
Sbjct: 357 VDLALGFASHYCKIGTMKCLVEEGNAIAFLGPLMRAAERGCMQVVQWFVKRGCRDMELCL 416

Query: 429 ALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDP 488
           ALTAATSS QVEVAAYLLP VP  VL ALSIEILKAAGERSGGSL GV FLL SDFLGD 
Sbjct: 417 ALTAATSSCQVEVAAYLLPRVPPPVLTALSIEILKAAGERSGGSLQGVEFLLKSDFLGDS 476

Query: 489 AATYAVADSIAR-SDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESP 547
            ATY+VADSIAR S+DE V  DLK FL+EHWSE+AF  G+++    +MN +R+LK GES 
Sbjct: 477 TATYSVADSIARSSEDESVPSDLKSFLQEHWSESAFEKGMRESHDDFMNFMRVLKKGESA 536

Query: 548 ICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGG 595
           I LRDLP PLRVAI Y+PLYREC+KA G LLSQRLRGQLVEAVR+L G
Sbjct: 537 ISLRDLPAPLRVAIAYMPLYRECMKADGRLLSQRLRGQLVEAVRQLQG 584

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
225434255	674	PREDICTED: F-box/ankyrin repeat protein	0.960	0.896	0.826	0.0
255585277	626	conserved hypothetical protein [Ricinus	0.939	0.944	0.848	0.0
296084381	969	unnamed protein product [Vitis vinifera]	0.930	0.603	0.830	0.0
224092814	613	predicted protein [Populus trichocarpa]	0.939	0.964	0.816	0.0
147840052	581	hypothetical protein VITISV_044152 [Viti	0.888	0.962	0.833	0.0
62867584	621	hypothetical protein [Nicotiana tabacum]	0.920	0.932	0.813	0.0
224117674	554	predicted protein [Populus trichocarpa]	0.856	0.972	0.836	0.0
449452877	623	PREDICTED: F-box/ankyrin repeat protein	0.915	0.924	0.786	0.0
15232209	611	F-box/ankyrin repeat protein SKIP35 [Ara	0.910	0.937	0.744	0.0
297820842	611	hypothetical protein ARALYDRAFT_486455 [	0.910	0.937	0.738	0.0

>gi|225434255|ref|XP_002276275.1| PREDICTED: F-box/ankyrin repeat protein SKIP35-like [Vitis vinifera]

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/604 (82%), Positives = 544/604 (90%)

Query: 1   MVKERFFVSKNDNMYLEDGIDHEEPFCAEMEADENETGTPANEVHGFTSEGSEGSNVVFS 60
           M +E   V+ ++N++  +G + ++P CAEME++ N  G P +    F+SE  EGSNVVFS
Sbjct: 49  MEEEFISVAGSNNLHSGNGTNPKDPLCAEMESNNNGIGHPKDASENFSSENGEGSNVVFS 108

Query: 61  REAPLISKESRISSGCSCSAKNLKSRRIIATDSDFATEKIGHEKKLSKSERVELGKMFQS 120
           REAPL+SK+SR S GCSCS K LKSR ++        +K+G+EKKLS+ +R+ELG+MFQ 
Sbjct: 109 REAPLVSKDSRTSGGCSCSPKKLKSRMVVTDSEPGKKDKVGNEKKLSRQDRIELGRMFQG 168

Query: 121 AMSSHDWELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDF 180
           A+SSHDWELAESLILLADPHTLNDALCI+LDSIWFL TQ+ELHG+T LIKKII+NGAYDF
Sbjct: 169 AVSSHDWELAESLILLADPHTLNDALCISLDSIWFLSTQEELHGITSLIKKIISNGAYDF 228

Query: 181 TRAALRTSFLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFT 240
           TRAALRTSFLASCVSACQSRTMSL DTVTVMAQRL+ERLQECNGDEVLKAEAGAKVQKFT
Sbjct: 229 TRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLHERLQECNGDEVLKAEAGAKVQKFT 288

Query: 241 EWALRCIGFHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACF 300
           EWAL+CIGFHSRC  N D VSHSSA+EIQLQLSAFK FLDLAGN LTGKDFTEAFDAACF
Sbjct: 289 EWALKCIGFHSRCQGNRDRVSHSSAIEIQLQLSAFKMFLDLAGNHLTGKDFTEAFDAACF 348

Query: 301 PLTLFSSSFDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIA 360
           PLTLFSSSFDPGWASGISAT IQGLLG+LVEGGADNVNQCFLEASRFGSTELVRILLQIA
Sbjct: 349 PLTLFSSSFDPGWASGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIA 408

Query: 361 QRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRG 420
           QRNSLDVDVDLALGFASHYCKIGTMECLVEEGNA+AFLGPLMRAAERGCMQVVQWFV+RG
Sbjct: 409 QRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAIAFLGPLMRAAERGCMQVVQWFVRRG 468

Query: 421 CRDMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLL 480
           CRDMDLCLALTAATSSSQV +AAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLL
Sbjct: 469 CRDMDLCLALTAATSSSQVGIAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLL 528

Query: 481 HSDFLGDPAATYAVADSIARSDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRI 540
            SDFLGDPAATYAVADSIARSDDE VAP+L+ FLR++WSEAAFLDGL++G  HYMN+LRI
Sbjct: 529 RSDFLGDPAATYAVADSIARSDDEAVAPELRAFLRQNWSEAAFLDGLREGQEHYMNILRI 588

Query: 541 LKWGESPICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGGGVLEE 600
           LKWGESPICLRDLPGPL VAI YLPLYRECV+A G LLSQRLRGQLVEAVRRLG G LEE
Sbjct: 589 LKWGESPICLRDLPGPLLVAIAYLPLYRECVEASGCLLSQRLRGQLVEAVRRLGSGPLEE 648

Query: 601 VSHG 604
           V  G
Sbjct: 649 VKQG 652

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585277|ref|XP_002533338.1| conserved hypothetical protein [Ricinus communis] gi|223526829|gb|EEF29047.1| conserved hypothetical protein [Ricinus communis]

 Score = 1025 bits (2649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/594 (84%), Positives = 537/594 (90%), Gaps = 3/594 (0%)

Query: 13  NMYLEDGIDHEEPFCAEMEADENETGTPANEVHGFT-SEGSEGSNVVFSREAPLISKESR 71
           N+ + D I+ E  FCAEME +ENETG+P +E+     SE  EGSNVVFSRE PLISKESR
Sbjct: 12  NLCMGDEINSENTFCAEMEVEENETGSPKSEIQLLAASEKGEGSNVVFSREGPLISKESR 71

Query: 72  ISSGCSCSAKNLKSRRIIATDSDFAT-EKIGHEKKLSKSERVELGKMFQSAMSSHDWELA 130
            S    C AK LKS  +I T+SD    E  GH++KL+K +R+ELG++FQ A+SSHDWELA
Sbjct: 72  RSGVYRCGAKKLKSHMVI-TESDIGKKENFGHDRKLTKQDRIELGRLFQGAVSSHDWELA 130

Query: 131 ESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFL 190
           ESLILLADP TLNDALCITLDSIWFL TQQELHG+TGLIKKII+NGAYDFTRAALRTSFL
Sbjct: 131 ESLILLADPQTLNDALCITLDSIWFLSTQQELHGLTGLIKKIISNGAYDFTRAALRTSFL 190

Query: 191 ASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFH 250
           ASCVSACQSRTMSL DTVTVMA+RL+ERLQECNGDE+LKAEAGAKVQKFTEWAL+CIGFH
Sbjct: 191 ASCVSACQSRTMSLADTVTVMARRLHERLQECNGDEILKAEAGAKVQKFTEWALKCIGFH 250

Query: 251 SRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFD 310
           SRC  N D VSH+SA+EIQLQLSAFKTFLDLAGN LTGKDFTEAFDAACFPLTLFSSSFD
Sbjct: 251 SRCQGNRDNVSHNSAIEIQLQLSAFKTFLDLAGNHLTGKDFTEAFDAACFPLTLFSSSFD 310

Query: 311 PGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVD 370
           PGWASGISAT IQGLLG+LVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVD
Sbjct: 311 PGWASGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVD 370

Query: 371 LALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLAL 430
           LALGFASHYCKIGTMECLVEEGNA+AFLGPLMRAAERGCMQVVQWFV RGCRDM+LCLAL
Sbjct: 371 LALGFASHYCKIGTMECLVEEGNAIAFLGPLMRAAERGCMQVVQWFVNRGCRDMELCLAL 430

Query: 431 TAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPAA 490
           TAATSSSQV+VAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLL SDFLGDPAA
Sbjct: 431 TAATSSSQVDVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLRSDFLGDPAA 490

Query: 491 TYAVADSIARSDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICL 550
           TYAVADSIARSDDE VAP+L+ FLREHWSEAAFLDGLKQG VHYMNL+RILKWG SP+CL
Sbjct: 491 TYAVADSIARSDDEAVAPELRAFLREHWSEAAFLDGLKQGQVHYMNLVRILKWGGSPMCL 550

Query: 551 RDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGGGVLEEVSHG 604
           RDLPGPLRVAI YLPLYRECV AGG L SQRLRGQLVE VRRLGGG LE VS G
Sbjct: 551 RDLPGPLRVAIAYLPLYRECVAAGGCLFSQRLRGQLVEGVRRLGGGSLEGVSQG 604

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084381|emb|CBI24769.3| unnamed protein product [Vitis vinifera]

 Score = 1019 bits (2635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/597 (83%), Positives = 537/597 (89%), Gaps = 12/597 (2%)

Query: 8   VSKNDNMYLEDGIDHEEPFCAEMEADENETGTPANEVHGFTSEGSEGSNVVFSREAPLIS 67
           V+ ++N++  +G + ++P CAEME++ N  G P +    F+SE  EGSNVVFSREAPL+S
Sbjct: 363 VAGSNNLHSGNGTNPKDPLCAEMESNNNGIGHPKDASENFSSENGEGSNVVFSREAPLVS 422

Query: 68  KESRISSGCSCSAKNLKSRRIIATDSDFATEKIGHEKKLSKSERVELGKMFQSAMSSHDW 127
           K+SR S GCSCS K LKSR             +G+EKKLS+ +R+ELG+MFQ A+SSHDW
Sbjct: 423 KDSRTSGGCSCSPKKLKSR------------MVGNEKKLSRQDRIELGRMFQGAVSSHDW 470

Query: 128 ELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRT 187
           ELAESLILLADPHTLNDALCI+LDSIWFL TQ+ELHG+T LIKKII+NGAYDFTRAALRT
Sbjct: 471 ELAESLILLADPHTLNDALCISLDSIWFLSTQEELHGITSLIKKIISNGAYDFTRAALRT 530

Query: 188 SFLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCI 247
           SFLASCVSACQSRTMSL DTVTVMAQRL+ERLQECNGDEVLKAEAGAKVQKFTEWAL+CI
Sbjct: 531 SFLASCVSACQSRTMSLADTVTVMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCI 590

Query: 248 GFHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSS 307
           GFHSRC  N D VSHSSA+EIQLQLSAFK FLDLAGN LTGKDFTEAFDAACFPLTLFSS
Sbjct: 591 GFHSRCQGNRDRVSHSSAIEIQLQLSAFKMFLDLAGNHLTGKDFTEAFDAACFPLTLFSS 650

Query: 308 SFDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDV 367
           SFDPGWASGISAT IQGLLG+LVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDV
Sbjct: 651 SFDPGWASGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDV 710

Query: 368 DVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLC 427
           DVDLALGFASHYCKIGTMECLVEEGNA+AFLGPLMRAAERGCMQVVQWFV+RGCRDMDLC
Sbjct: 711 DVDLALGFASHYCKIGTMECLVEEGNAIAFLGPLMRAAERGCMQVVQWFVRRGCRDMDLC 770

Query: 428 LALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGD 487
           LALTAATSSSQV +AAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLL SDFLGD
Sbjct: 771 LALTAATSSSQVGIAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLRSDFLGD 830

Query: 488 PAATYAVADSIARSDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESP 547
           PAATYAVADSIARSDDE VAP+L+ FLR++WSEAAFLDGL++G  HYMN+LRILKWGESP
Sbjct: 831 PAATYAVADSIARSDDEAVAPELRAFLRQNWSEAAFLDGLREGQEHYMNILRILKWGESP 890

Query: 548 ICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGGGVLEEVSHG 604
           ICLRDLPGPL VAI YLPLYRECV+A G LLSQRLRGQLVEAVRRLG G LEEV  G
Sbjct: 891 ICLRDLPGPLLVAIAYLPLYRECVEASGCLLSQRLRGQLVEAVRRLGSGPLEEVKQG 947

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092814|ref|XP_002309709.1| predicted protein [Populus trichocarpa] gi|222852612|gb|EEE90159.1| predicted protein [Populus trichocarpa]

 Score =  985 bits (2547), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/593 (81%), Positives = 521/593 (87%), Gaps = 2/593 (0%)

Query: 14  MYLEDGIDHEEPFCAEMEADENETGTPANEVHGFTSEGSEGSNVVFSREAPLISKESRIS 73
           M+LED  + EE F  EME +ENE G+P +E+  F+SE  EGSNVVFSREAP IS ESR+S
Sbjct: 1   MHLEDVFNPEESFTVEMETEENEIGSPKSEIQCFSSEMGEGSNVVFSREAPHISTESRVS 60

Query: 74  SGCSCSAKNLKSRRIIATDSDFA-TEKIGHEKKLSKSERVELGKMFQSAMSSHDWELAES 132
             CSCSA  +K   ++A +S+    E  G EKKLS+ +R+ELG+MFQSA+S HDWE AES
Sbjct: 61  GVCSCSATKIKPH-VVAMESEIGDKENFGQEKKLSRQDRIELGRMFQSAVSCHDWEPAES 119

Query: 133 LILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLAS 192
           LILLADP TLNDALCITLDSIWFL TQQEL G+T LIKKIIANGAYDFTRAALRTSFLAS
Sbjct: 120 LILLADPQTLNDALCITLDSIWFLSTQQELDGITSLIKKIIANGAYDFTRAALRTSFLAS 179

Query: 193 CVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFHSR 252
           CVSACQS+TM L+DTV VMAQRL ERL+ECNGDEVLKAEA AKVQKFTEWAL+CIGFHSR
Sbjct: 180 CVSACQSQTMHLEDTVNVMAQRLKERLKECNGDEVLKAEASAKVQKFTEWALKCIGFHSR 239

Query: 253 CNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPG 312
           C  N D V  SS  EIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFS+SFDPG
Sbjct: 240 CQANRDRVIQSSIAEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSTSFDPG 299

Query: 313 WASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLA 372
           WASGISA  IQGLLG+LVEGGADNVNQCFLEASRFGSTELVRILLQIA  NSLDVDVDLA
Sbjct: 300 WASGISAAAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAHWNSLDVDVDLA 359

Query: 373 LGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTA 432
           LGFASHYCKIGTMECLVEEGNA+AFLGPLMRAAERGCMQVVQWFVKRGCRDM+LCLALTA
Sbjct: 360 LGFASHYCKIGTMECLVEEGNAIAFLGPLMRAAERGCMQVVQWFVKRGCRDMELCLALTA 419

Query: 433 ATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPAATY 492
           ATSSSQV+VA YLLPHVP HVLAALSIEILKAAGERSGGSLDGVAFLL SDFLGDP ATY
Sbjct: 420 ATSSSQVDVAGYLLPHVPHHVLAALSIEILKAAGERSGGSLDGVAFLLCSDFLGDPTATY 479

Query: 493 AVADSIARSDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICLRD 552
           AVADSIARSDDE VAP+L+ FLREHWSEAA+LDGLKQG  HYMNL+RIL WG SPI LRD
Sbjct: 480 AVADSIARSDDESVAPELRAFLREHWSEAAYLDGLKQGQEHYMNLVRILNWGGSPISLRD 539

Query: 553 LPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGGGVLEEVSHGN 605
           LPGPLRVA+ YLPL+RECV  GG LLSQ+ RGQLVEAVR+LGGG LE+VS G 
Sbjct: 540 LPGPLRVAVAYLPLFRECVATGGCLLSQKQRGQLVEAVRKLGGGSLEDVSQGK 592

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840052|emb|CAN70678.1| hypothetical protein VITISV_044152 [Vitis vinifera]

 Score =  979 bits (2531), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/575 (83%), Positives = 512/575 (89%), Gaps = 16/575 (2%)

Query: 30  MEADENETGTPANEVHGFTSEGSEGSNVVFSREAPLISKESRISSGCSCSAKNLKSRRII 89
           ME++ N  G P +    F+SE  EGSNVVFSREAPL                 LKSR ++
Sbjct: 1   MESNNNGIGHPKDASENFSSENGEGSNVVFSREAPL----------------KLKSRMVV 44

Query: 90  ATDSDFATEKIGHEKKLSKSERVELGKMFQSAMSSHDWELAESLILLADPHTLNDALCIT 149
                   +K+G+EKKLS+ +R+ELG+MFQ A+SSHDWELAESLILLADPHTLNDALCI+
Sbjct: 45  TDSEPGKKDKVGNEKKLSRQDRIELGRMFQGAVSSHDWELAESLILLADPHTLNDALCIS 104

Query: 150 LDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVT 209
           LDSIWFL TQ+ELHG+T LIKKII+NGAYDFTRAALRTSFLASCVSACQSRTMSL DTVT
Sbjct: 105 LDSIWFLSTQEELHGITSLIKKIISNGAYDFTRAALRTSFLASCVSACQSRTMSLADTVT 164

Query: 210 VMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFHSRCNDNCDAVSHSSAVEIQ 269
           VMAQRL+ERLQECNGDEVLKAEAGAKVQKFTEWAL+CIGFHSRC  N D VSHSSA+EIQ
Sbjct: 165 VMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNRDRVSHSSAIEIQ 224

Query: 270 LQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGLL 329
           LQLSAFK FLDLAGN LTGKDFTEAFDAACFPLTLFSSSFDPGWASGISAT IQGLLG+L
Sbjct: 225 LQLSAFKMFLDLAGNHLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLGML 284

Query: 330 VEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLV 389
           VEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLV
Sbjct: 285 VEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLV 344

Query: 390 EEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHV 449
           EEGNA+AFLGPLMRAAERGCMQVVQWFV+RGCRDMDLCLALTAATSSSQV +AAYLLPHV
Sbjct: 345 EEGNAIAFLGPLMRAAERGCMQVVQWFVRRGCRDMDLCLALTAATSSSQVGIAAYLLPHV 404

Query: 450 PQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPAATYAVADSIARSDDEGVAPD 509
           PQHVLAALSIEILKAAGERSGGSLDGVAFLL SDFLGDPAATYAVADSIARSDDE VAP+
Sbjct: 405 PQHVLAALSIEILKAAGERSGGSLDGVAFLLRSDFLGDPAATYAVADSIARSDDEAVAPE 464

Query: 510 LKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICLRDLPGPLRVAITYLPLYRE 569
           L+ FLR++WSEAAFLDGL++G  HYMN+LRILKWGESPICLRDLPGPL VAI YLPLYRE
Sbjct: 465 LRAFLRQNWSEAAFLDGLREGQEHYMNILRILKWGESPICLRDLPGPLLVAIAYLPLYRE 524

Query: 570 CVKAGGHLLSQRLRGQLVEAVRRLGGGVLEEVSHG 604
           CV+A G LLSQRLRGQLVEAVRRLG G LEEV  G
Sbjct: 525 CVEASGCLLSQRLRGQLVEAVRRLGSGPLEEVKQG 559

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62867584|emb|CAI84657.1| hypothetical protein [Nicotiana tabacum]

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/594 (81%), Positives = 526/594 (88%), Gaps = 15/594 (2%)

Query: 20  IDHEEPFCAEMEADENETGTPANEVHGFTSEGSEGS--NVVFSREAPLISKESRISS--- 74
           I+ EE  C EME +  ETG P     G ++E  EGS  NVVFSRE+PL+SK+ R S+   
Sbjct: 12  INTEESQCFEMEVESCETGIP-----GLSNENGEGSHGNVVFSRESPLVSKDFRSSAIVG 66

Query: 75  ---GCSCSAKNLKSRRIIATDSDFA-TEKIGHEKKLSKSERVELGKMFQSAMSSHDWELA 130
              GC+C    LK+R + ++D +    EK GHEKKL++ ER+ELG++FQ A+S HDWELA
Sbjct: 67  GGGGCNCGVNKLKAR-LSSSDCEVGKNEKSGHEKKLNRQERIELGRLFQGAVSCHDWELA 125

Query: 131 ESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFL 190
           ESLILLADP TLNDALCI LDSIWFL TQ+EL+G+TGLIKKII+NGA+DFTRAALRTSFL
Sbjct: 126 ESLILLADPLTLNDALCIALDSIWFLSTQEELYGITGLIKKIISNGAFDFTRAALRTSFL 185

Query: 191 ASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFH 250
           ASCVSACQSRTMSL DTVTVMAQRL+ERLQECNGDEVLKAEAGAKVQKFTEWAL+CIGFH
Sbjct: 186 ASCVSACQSRTMSLADTVTVMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFH 245

Query: 251 SRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFD 310
           SRC  N D V H++AVEIQLQLSAFKTFLDLAGN LTGKDFTEAFDAACFPLTLFSSSFD
Sbjct: 246 SRCQGNRDKVGHNAAVEIQLQLSAFKTFLDLAGNHLTGKDFTEAFDAACFPLTLFSSSFD 305

Query: 311 PGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVD 370
           PGWASGISAT IQGLLG+LVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVD
Sbjct: 306 PGWASGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVD 365

Query: 371 LALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLAL 430
           LALGFASHY KIGTMECLVEEGNA+AFLGPLMRAAERGC+QVV WFVKRGCRDM+LCLAL
Sbjct: 366 LALGFASHYGKIGTMECLVEEGNAMAFLGPLMRAAERGCIQVVDWFVKRGCRDMELCLAL 425

Query: 431 TAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPAA 490
           TAATSSSQVEVA YLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLL SDFLGDPAA
Sbjct: 426 TAATSSSQVEVAEYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLSSDFLGDPAA 485

Query: 491 TYAVADSIARSDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICL 550
           TYAVADSIA+SDDE VAP+L+ FLREHWSEAAF DGL+QG  HY+N++RILKWGESP+CL
Sbjct: 486 TYAVADSIAKSDDEAVAPELRSFLREHWSEAAFSDGLRQGQEHYLNIVRILKWGESPVCL 545

Query: 551 RDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGGGVLEEVSHG 604
            DLPGPLRVAI YLPLYRECVKAGG LLSQRLRGQLVEA +RL G VLEEV+ G
Sbjct: 546 ADLPGPLRVAIAYLPLYRECVKAGGCLLSQRLRGQLVEAAKRLDGVVLEEVNQG 599

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117674|ref|XP_002331603.1| predicted protein [Populus trichocarpa] gi|222873999|gb|EEF11130.1| predicted protein [Populus trichocarpa]

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/551 (83%), Positives = 486/551 (88%), Gaps = 12/551 (2%)

Query: 55  SNVVFSREAPLISKESRISSGCSCSAKNLKSRRIIATDSDFATEKIGHEKKLSKSERVEL 114
           SNVVFSREAPLISKE+RIS  CSCS K LK R              G EKKLS+ +R+EL
Sbjct: 1   SNVVFSREAPLISKETRISGVCSCSTKKLKPR------------NFGQEKKLSRQDRIEL 48

Query: 115 GKMFQSAMSSHDWELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIA 174
           G+MFQSA+S HDWE AESLILLAD  TLNDALCITLDSIWFL TQQEL G+TGLIKKIIA
Sbjct: 49  GRMFQSAVSCHDWEPAESLILLADAQTLNDALCITLDSIWFLSTQQELDGITGLIKKIIA 108

Query: 175 NGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGA 234
           NGAYDFTRAALRTSFLASCVSACQS+TM L+DTV VMAQRL ERLQECNGDEVLKAEA A
Sbjct: 109 NGAYDFTRAALRTSFLASCVSACQSQTMHLEDTVNVMAQRLKERLQECNGDEVLKAEASA 168

Query: 235 KVQKFTEWALRCIGFHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEA 294
           KVQKFTEWAL+CIGFHSRC  N D V  SS  E+QLQLSAFKTFLDLAGNQLTGKDFTEA
Sbjct: 169 KVQKFTEWALKCIGFHSRCQVNRDRVIQSSIAEVQLQLSAFKTFLDLAGNQLTGKDFTEA 228

Query: 295 FDAACFPLTLFSSSFDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVR 354
           FDAACFPLTLFSSSF+PGW+SGISAT IQGLLG+LVEGGADNVNQCFLEASRFGSTELVR
Sbjct: 229 FDAACFPLTLFSSSFNPGWSSGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVR 288

Query: 355 ILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQ 414
           ILLQIA RNSLDVDVDLALGFASHYCKIGTMECLVEEGNA+AFLGPLMRA+ERGCMQVVQ
Sbjct: 289 ILLQIAHRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAIAFLGPLMRASERGCMQVVQ 348

Query: 415 WFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLD 474
           WFVKRGCRDM+LCLALTAATSSSQV+VA YLLPHVPQHVLAALSIEILKAAGERSGGSLD
Sbjct: 349 WFVKRGCRDMELCLALTAATSSSQVDVAGYLLPHVPQHVLAALSIEILKAAGERSGGSLD 408

Query: 475 GVAFLLHSDFLGDPAATYAVADSIARSDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHY 534
           GVAFLLHSDFLGDP ATYAVADSIARSDDE VAP+LK FLRE+WSEAAFLDGLKQG  HY
Sbjct: 409 GVAFLLHSDFLGDPTATYAVADSIARSDDESVAPELKAFLRENWSEAAFLDGLKQGQEHY 468

Query: 535 MNLLRILKWGESPICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLG 594
           MNL+ IL WG SPI LR LPGPLRVA+ YLPLYREC    G L SQ+ RG LVEAVR+LG
Sbjct: 469 MNLVMILNWGRSPISLRHLPGPLRVAVAYLPLYRECAATAGRLFSQKQRGLLVEAVRKLG 528

Query: 595 GGVLEEVSHGN 605
           GG  E+VS G 
Sbjct: 529 GGSSEDVSQGK 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452877|ref|XP_004144185.1| PREDICTED: F-box/ankyrin repeat protein SKIP35-like [Cucumis sativus] gi|449489214|ref|XP_004158248.1| PREDICTED: F-box/ankyrin repeat protein SKIP35-like [Cucumis sativus]

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/576 (78%), Positives = 503/576 (87%)

Query: 29  EMEADENETGTPANEVHGFTSEGSEGSNVVFSREAPLISKESRISSGCSCSAKNLKSRRI 88
           E++ +ENE      +V+   SE  EGS+VVFSRE PL+ KES ++ GC+ + ++ KS  +
Sbjct: 26  EIKTEENEIDIQKGDVYAPASEKGEGSSVVFSREGPLVKKESVLAHGCNSNEQSPKSMLM 85

Query: 89  IATDSDFATEKIGHEKKLSKSERVELGKMFQSAMSSHDWELAESLILLADPHTLNDALCI 148
           +         K  HEKKLS+ +R ELG++FQ A+SSHDWELA+SLI LADP TLNDALCI
Sbjct: 86  VTDHKQGKKGKSCHEKKLSRQDRFELGRLFQGAVSSHDWELADSLIALADPPTLNDALCI 145

Query: 149 TLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTV 208
           TLDSIWFL TQQELHG+TGLIK II +GAYDFTRAALRTSFLASCVSACQSRTMSL DTV
Sbjct: 146 TLDSIWFLSTQQELHGITGLIKNIIVSGAYDFTRAALRTSFLASCVSACQSRTMSLADTV 205

Query: 209 TVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFHSRCNDNCDAVSHSSAVEI 268
           TVMAQRL ERLQECNGDEVLKAEAG KVQKFTEWAL+CIGFHS C+ N D V+ SSA EI
Sbjct: 206 TVMAQRLRERLQECNGDEVLKAEAGTKVQKFTEWALKCIGFHSGCHGNKDRVTQSSAAEI 265

Query: 269 QLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGL 328
           QLQLSAFK FLD AGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWA+GISAT IQGLL L
Sbjct: 266 QLQLSAFKMFLDFAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWATGISATAIQGLLCL 325

Query: 329 LVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECL 388
           LVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECL
Sbjct: 326 LVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECL 385

Query: 389 VEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPH 448
           VEEGNA+AFLGPLMRAAERGC+ VV+WFVKRGC+DM+LCLALTAATSSSQ+ VAAYLLPH
Sbjct: 386 VEEGNAIAFLGPLMRAAERGCLPVVEWFVKRGCQDMELCLALTAATSSSQINVAAYLLPH 445

Query: 449 VPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPAATYAVADSIARSDDEGVAP 508
           VPQHVLAALSIEILKAAGERS GSLDGV FLLHS+FLGD +ATYAVADSI++S DE VAP
Sbjct: 446 VPQHVLAALSIEILKAAGERSSGSLDGVEFLLHSNFLGDVSATYAVADSISKSSDESVAP 505

Query: 509 DLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICLRDLPGPLRVAITYLPLYR 568
           +L+ FLREHWSEAA++DGLKQG  +Y+N +RIL+WG  PI LRD+P PLRVAI YLPLYR
Sbjct: 506 ELRAFLREHWSEAAYVDGLKQGQENYLNFVRILRWGGFPISLRDIPAPLRVAIAYLPLYR 565

Query: 569 ECVKAGGHLLSQRLRGQLVEAVRRLGGGVLEEVSHG 604
           EC+K  G+L SQ+LRGQLVEA RRLGGGVLEEVS+G
Sbjct: 566 ECIKVNGYLFSQKLRGQLVEAARRLGGGVLEEVSNG 601

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232209|ref|NP_191550.1| F-box/ankyrin repeat protein SKIP35 [Arabidopsis thaliana] gi|75182350|sp|Q9M1Y3.1|SKI35_ARATH RecName: Full=F-box/ankyrin repeat protein SKIP35; AltName: Full=SKP1-interacting partner 35 gi|7019685|emb|CAB75810.1| putative protein [Arabidopsis thaliana] gi|20466798|gb|AAM20716.1| putative protein [Arabidopsis thaliana] gi|30725436|gb|AAP37740.1| At3g59910 [Arabidopsis thaliana] gi|332646463|gb|AEE79984.1| F-box/ankyrin repeat protein SKIP35 [Arabidopsis thaliana]

 Score =  869 bits (2246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/588 (74%), Positives = 489/588 (83%), Gaps = 15/588 (2%)

Query: 12  DNMYLEDGIDHEEPFCAEMEADENETGTPANEVHGFTSEGSEGSNVVFSREAPLISKESR 71
           D + L D +  +EPFC+EM+    ET   + +      EG EGS VVFSREAPLI K+S 
Sbjct: 8   DTINLSDQMYPDEPFCSEMK---TETIASSQKF-----EGGEGSKVVFSREAPLIGKDSA 59

Query: 72  -ISSG--CSCSAKNLKSRRIIATDSDFATEKIGHEKKLSKSERVELGKMFQSAMSSHDWE 128
             +SG  C CSAK L  +     D     E I  +KKL++ ER+ELG++FQ A++S DWE
Sbjct: 60  GTNSGECCGCSAKKLNFK---GDDDLVEKENIEQQKKLNRQERIELGRLFQGAVTSLDWE 116

Query: 129 LAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTS 188
           LAE LI LADP TLND LC+ LDS+WFL T+ E  G+TGLIKKII +GA+DFTRA LRTS
Sbjct: 117 LAERLIQLADPQTLNDLLCVGLDSVWFLSTKPEFQGITGLIKKIICHGAHDFTRATLRTS 176

Query: 189 FLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIG 248
           FLASCVSACQSRTMSL DTVTVMAQRL+ERLQECNGDE+LKAEAGAKVQKFTEWAL+CIG
Sbjct: 177 FLASCVSACQSRTMSLSDTVTVMAQRLHERLQECNGDEILKAEAGAKVQKFTEWALKCIG 236

Query: 249 FHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSS 308
           FHSRC    D VS +SA EI+LQLSAFK FLDLAGN L+G+DFTEAFDAACFPLTLFS+S
Sbjct: 237 FHSRCQGAKDRVSQNSAAEIELQLSAFKMFLDLAGNHLSGRDFTEAFDAACFPLTLFSNS 296

Query: 309 FDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVD 368
           FDPGWASG+SATVIQGLLG+LVEGGADNVNQCFLEASRFGSTELVR+LLQIAQRNSLDVD
Sbjct: 297 FDPGWASGMSATVIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRVLLQIAQRNSLDVD 356

Query: 369 VDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCL 428
           VDLALGFASHYCKIGTM+CLVEEGNA+AFLGPLMRAAERGCMQVVQWFVKRGCRDM+LCL
Sbjct: 357 VDLALGFASHYCKIGTMKCLVEEGNAIAFLGPLMRAAERGCMQVVQWFVKRGCRDMELCL 416

Query: 429 ALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDP 488
           ALTAATSS QVEVAAYLLP VP  VL ALSIEILKAAGERSGGSL GV FLL SDFLGD 
Sbjct: 417 ALTAATSSCQVEVAAYLLPRVPPPVLTALSIEILKAAGERSGGSLQGVEFLLKSDFLGDS 476

Query: 489 AATYAVADSIAR-SDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESP 547
            ATY+VADSIAR S+DE V  DLK FL+EHWSE+AF  G+++    +MN +R+LK GES 
Sbjct: 477 TATYSVADSIARSSEDESVPSDLKSFLQEHWSESAFEKGMRESHDDFMNFMRVLKKGESA 536

Query: 548 ICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGG 595
           I LRDLP PLRVAI Y+PLYREC+KA G LLSQRLRGQLVEAVR+L G
Sbjct: 537 ISLRDLPAPLRVAIAYMPLYRECMKADGRLLSQRLRGQLVEAVRQLQG 584

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820842|ref|XP_002878304.1| hypothetical protein ARALYDRAFT_486455 [Arabidopsis lyrata subsp. lyrata] gi|297324142|gb|EFH54563.1| hypothetical protein ARALYDRAFT_486455 [Arabidopsis lyrata subsp. lyrata]

 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/588 (73%), Positives = 487/588 (82%), Gaps = 15/588 (2%)

Query: 12  DNMYLEDGIDHEEPFCAEMEADENETGTPANEVHGFTSEGSEGSNVVFSREAPLISKE-S 70
           DN+ L D +  +EPFC+EM+    ET   + +     +EG EGSNVVFSREAPLI K+ +
Sbjct: 8   DNIKLTDQMHPDEPFCSEMK---TETIASSQK-----TEGGEGSNVVFSREAPLIGKDPA 59

Query: 71  RISSG--CSCSAKNLKSRRIIATDSDFATEKIGHEKKLSKSERVELGKMFQSAMSSHDWE 128
             +SG  C CSA  L  +     D     E I   KKL++ ER+ELG++FQ A++S DWE
Sbjct: 60  GTNSGECCGCSANKLNFKE---NDDLIEKENIEQLKKLNRQERIELGRLFQGAVTSLDWE 116

Query: 129 LAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTS 188
           LA+ LI LADP TLND LC+ LDS+WFL T  E   +TGLIKKII +GA+DFTRA LRTS
Sbjct: 117 LADRLIQLADPQTLNDLLCVGLDSVWFLSTNPEFQRITGLIKKIICHGAHDFTRATLRTS 176

Query: 189 FLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIG 248
           FLASCVSACQSRTMSL DTVTVMAQRL+ERLQECNGDE+LKAEAGAKVQKFTEWAL+CIG
Sbjct: 177 FLASCVSACQSRTMSLADTVTVMAQRLHERLQECNGDEILKAEAGAKVQKFTEWALKCIG 236

Query: 249 FHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSS 308
           FHSRC    D VS +SA EI+LQLSAFK FLDLAGN L+G+DFTEAFDAACFPLTLFS+S
Sbjct: 237 FHSRCQGAKDRVSQNSAAEIELQLSAFKMFLDLAGNHLSGRDFTEAFDAACFPLTLFSNS 296

Query: 309 FDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVD 368
           FDPGWASG+SATVI GLLG+LVEGGADNVNQCFLEASRFGSTELVR+LLQIAQRNSLDVD
Sbjct: 297 FDPGWASGMSATVIHGLLGMLVEGGADNVNQCFLEASRFGSTELVRVLLQIAQRNSLDVD 356

Query: 369 VDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCL 428
           VDLALGFASHYCKIGTM+CLVEEGNA+AFLGPLMRAAERGCMQVVQWFVKRGCRDM+LCL
Sbjct: 357 VDLALGFASHYCKIGTMKCLVEEGNAIAFLGPLMRAAERGCMQVVQWFVKRGCRDMELCL 416

Query: 429 ALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDP 488
           ALTAATSS QVEVAAYLLP VP  VL ALSIEILKAAGERSGGSL GV FLL SDFLGD 
Sbjct: 417 ALTAATSSCQVEVAAYLLPRVPPPVLTALSIEILKAAGERSGGSLQGVEFLLKSDFLGDS 476

Query: 489 AATYAVADSIAR-SDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESP 547
            ATY+VADSIAR S+DE V  DLK FL+EHWSE+AF  G+++   ++MN +R+LK GES 
Sbjct: 477 TATYSVADSIARSSEDESVPSDLKSFLQEHWSESAFEKGMRESHENFMNFMRVLKKGESA 536

Query: 548 ICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGG 595
           I LRDLP PLRVAI Y+PLYREC+K  G LLSQRLRGQLVEAVR+L G
Sbjct: 537 ISLRDLPAPLRVAIAYMPLYRECMKGDGRLLSQRLRGQLVEAVRQLQG 584

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
TAIR|locus:2080512	611	AT3G59910 "AT3G59910" [Arabido	0.909	0.936	0.748	5.6e-226
TAIR|locus:2051819	582	AT2G44090 "AT2G44090" [Arabido	0.887	0.958	0.726	5.5e-212

TAIR|locus:2080512 AT3G59910 "AT3G59910" [Arabidopsis thaliana (taxid:3702)]

 Score = 2181 (772.8 bits), Expect = 5.6e-226, P = 5.6e-226
 Identities = 441/589 (74%), Positives = 491/589 (83%)

Query:    12 DNMYLEDGIDHEEPFCAEMEADENETGTPANEVHGFTSEGSEGSNVVFSREAPLISKESR 71
             D + L D +  +EPFC+EM+     T T A+    F  EG EGS VVFSREAPLI K+S 
Sbjct:     8 DTINLSDQMYPDEPFCSEMK-----TETIASS-QKF--EGGEGSKVVFSREAPLIGKDSA 59

Query:    72 -ISSG--CSCSAKNLKSRRIIATDSDFAT-EKIGHEKKLSKSERVELGKMFQSAMSSHDW 127
               +SG  C CSAK L  +     D D    E I  +KKL++ ER+ELG++FQ A++S DW
Sbjct:    60 GTNSGECCGCSAKKLNFKG----DDDLVEKENIEQQKKLNRQERIELGRLFQGAVTSLDW 115

Query:   128 ELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRT 187
             ELAE LI LADP TLND LC+ LDS+WFL T+ E  G+TGLIKKII +GA+DFTRA LRT
Sbjct:   116 ELAERLIQLADPQTLNDLLCVGLDSVWFLSTKPEFQGITGLIKKIICHGAHDFTRATLRT 175

Query:   188 SFLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCI 247
             SFLASCVSACQSRTMSL DTVTVMAQRL+ERLQECNGDE+LKAEAGAKVQKFTEWAL+CI
Sbjct:   176 SFLASCVSACQSRTMSLSDTVTVMAQRLHERLQECNGDEILKAEAGAKVQKFTEWALKCI 235

Query:   248 GFHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSS 307
             GFHSRC    D VS +SA EI+LQLSAFK FLDLAGN L+G+DFTEAFDAACFPLTLFS+
Sbjct:   236 GFHSRCQGAKDRVSQNSAAEIELQLSAFKMFLDLAGNHLSGRDFTEAFDAACFPLTLFSN 295

Query:   308 SFDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDV 367
             SFDPGWASG+SATVIQGLLG+LVEGGADNVNQCFLEASRFGSTELVR+LLQIAQRNSLDV
Sbjct:   296 SFDPGWASGMSATVIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRVLLQIAQRNSLDV 355

Query:   368 DVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLC 427
             DVDLALGFASHYCKIGTM+CLVEEGNA+AFLGPLMRAAERGCMQVVQWFVKRGCRDM+LC
Sbjct:   356 DVDLALGFASHYCKIGTMKCLVEEGNAIAFLGPLMRAAERGCMQVVQWFVKRGCRDMELC 415

Query:   428 LALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGD 487
             LALTAATSS QVEVAAYLLP VP  VL ALSIEILKAAGERSGGSL GV FLL SDFLGD
Sbjct:   416 LALTAATSSCQVEVAAYLLPRVPPPVLTALSIEILKAAGERSGGSLQGVEFLLKSDFLGD 475

Query:   488 PAATYAVADSIARS-DDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGES 546
               ATY+VADSIARS +DE V  DLK FL+EHWSE+AF  G+++    +MN +R+LK GES
Sbjct:   476 STATYSVADSIARSSEDESVPSDLKSFLQEHWSESAFEKGMRESHDDFMNFMRVLKKGES 535

Query:   547 PICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRRLGG 595
              I LRDLP PLRVAI Y+PLYREC+KA G LLSQRLRGQLVEAVR+L G
Sbjct:   536 AISLRDLPAPLRVAIAYMPLYRECMKADGRLLSQRLRGQLVEAVRQLQG 584

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051819 AT2G44090 "AT2G44090" [Arabidopsis thaliana (taxid:3702)]

 Score = 2049 (726.3 bits), Expect = 5.5e-212, P = 5.5e-212
 Identities = 417/574 (72%), Positives = 473/574 (82%)

Query:    34 ENETGTPANEVHGFTSEGSEGSNVVFSREAPLISKESRISSGCSCSAKNLKSRRIIATDS 93
             EN+   P   V G   E  E S+VVF+RE+PL+   ++ +     +AK LK R +     
Sbjct:     2 ENDDMYPDEPV-GSDLEPQE-SDVVFARESPLVGIITQPTKCSGSTAKILKCRGL----- 54

Query:    94 DFATEKIGHEKKLSKSERVELGKMFQSAMSSHDWELAESLILLADPHTLNDALCITLDSI 153
                 E+   +KKL++ +R+ELG++FQ A+SS DW+L+E  I LADP TLND LCI+LDSI
Sbjct:    55 ----EQ---QKKLNRQDRIELGRLFQGAVSSQDWQLSERFIQLADPQTLNDLLCISLDSI 107

Query:   154 WFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVTVMAQ 213
             WFL T+ EL G+T LI KII +GA D+TRA LRTSFLASCVS+C SRT+SL DTVTVMAQ
Sbjct:   108 WFLSTEHELRGITELIAKIICHGAQDYTRATLRTSFLASCVSSCHSRTVSLADTVTVMAQ 167

Query:   214 RLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFHSRCNDNCDAVSHSSAVEIQLQLS 273
             RL+ERLQECNGDEVLKAEAGAKVQKFTEWAL+CIGFHSRC    D  +  SA EIQLQLS
Sbjct:   168 RLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGPRDKANQDSAAEIQLQLS 227

Query:   274 AFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGLLVEGG 333
             AFK FLDLAGN L+GKDFTEAFDAACFPLTLFS+SF+PGWASGISATVI GLLG+LVEGG
Sbjct:   228 AFKMFLDLAGNHLSGKDFTEAFDAACFPLTLFSTSFNPGWASGISATVIHGLLGMLVEGG 287

Query:   334 ADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGN 393
             ADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHY KI TM+CLVEEG+
Sbjct:   288 ADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYSKIETMDCLVEEGH 347

Query:   394 AVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVPQHV 453
             A+AFLGPLMRAAERGCMQVVQWFVKRGCR+M+LCLALTAATSSSQVEVAAYLLPHVP+ V
Sbjct:   348 AIAFLGPLMRAAERGCMQVVQWFVKRGCREMELCLALTAATSSSQVEVAAYLLPHVPRPV 407

Query:   454 LAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPAATYAVADSIARSDDEGVAPDLKVF 513
             L ALSIEILKAAGERSGGSL GV FLL SDFLGDPAATY+VAD+IA+S+DE V  DLK F
Sbjct:   408 LTALSIEILKAAGERSGGSLHGVEFLLKSDFLGDPAATYSVADTIAKSEDESVPSDLKSF 467

Query:   514 LREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICLRDLPGPLRVAITYLPLYRECVKA 573
             L+E WSEAAF  GLK+   +YMN +R+LK GES I L+DLP PLRVAI Y+PLYRECV A
Sbjct:   468 LQEQWSEAAFNQGLKESRENYMNFMRVLKLGESAISLKDLPAPLRVAIAYMPLYRECVDA 527

Query:   574 GGHLLSQRLRGQLVEAVRRLGGGVL--EEVSHGN 605
             GG LLSQ+LRGQLVEA  +L G  +  EEV  G+
Sbjct:   528 GGRLLSQKLRGQLVEAATQLEGFDVDTEEVKKGH 561


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      629       629   0.00091  120 3  11 22  0.37    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  631 (67 KB)
  Total size of DFA:  356 KB (2176 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:07
  No. of threads or processors used:  24
  Search cpu time:  49.62u 0.09s 49.71t   Elapsed:  00:00:27
  Total cpu time:  49.62u 0.09s 49.71t   Elapsed:  00:00:34
  Start:  Fri May 10 19:01:30 2013   End:  Fri May 10 19:02:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M1Y3	SKI35_ARATH	No assigned EC number	0.7448	0.9109	0.9378	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034776001 SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (614 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	629
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 10/117 (8%)

Query: 340 CFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAV 395
               A+  G  E+V++LL+  A  N+ D D    L  A+    +  ++ L+E+G   NA 
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 396 AFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLL 446
              G  PL  AA  G + VV+  +K G     RD D    L  A  +  +EV   LL
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 373 LGFASHYCKIGTMECLVEEGNAVAF---LGPLMRAAERGCMQVVQWFVKRGC----RDMD 425
           L  A+    +  ++ L+E+G  V        L  AA  G +++V+  ++ G     +D D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 426 LCLALTAATSSSQVEVAAYLLPH 448
              AL  A  +  +E+   LL H
Sbjct: 61  GNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 341 FLEASRFGSTELVRILLQIAQRNSLDVDV---DLALGFASHYCKIGTMECLVEEG---NA 394
              A++ G+ ELV++LL+       DV++   D AL  A+    +  ++ L+E G   NA
Sbjct: 1   LHLAAKNGNLELVKLLLE----KGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 395 VAFLG--PLMRAAERGCMQVVQWFVKRGC 421
               G   L  AA  G +++V+  ++ G 
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 363 NSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFV 417
           N+ D D    L  A+    +  ++ L+E G   NA    G  PL  AA+ G +++V+  +
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 418 KRGC----RDMDLCLALTAATSSSQVEVAAYLLPH 448
           ++G     RD D    L  A  +  ++V   LL H
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH 95

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	629
PHA02791	284	ankyrin-like protein; Provisional	99.87
PHA02791	284	ankyrin-like protein; Provisional	99.87
PHA02875	413	ankyrin repeat protein; Provisional	99.84
PHA02875	413	ankyrin repeat protein; Provisional	99.83
PHA02874	434	ankyrin repeat protein; Provisional	99.82
PHA03100	480	ankyrin repeat protein; Provisional	99.81
PHA02741	169	hypothetical protein; Provisional	99.81
PHA02874	434	ankyrin repeat protein; Provisional	99.81
PHA03095	471	ankyrin-like protein; Provisional	99.8
PHA02946	446	ankyin-like protein; Provisional	99.8
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.8
PHA02878	477	ankyrin repeat protein; Provisional	99.8
PHA03100	480	ankyrin repeat protein; Provisional	99.79
PHA02878	477	ankyrin repeat protein; Provisional	99.79
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.79
PHA02989	494	ankyrin repeat protein; Provisional	99.79
PHA02798	489	ankyrin-like protein; Provisional	99.78
PHA03095	471	ankyrin-like protein; Provisional	99.77
PHA02946	446	ankyin-like protein; Provisional	99.77
PHA02989	494	ankyrin repeat protein; Provisional	99.77
PHA02859	209	ankyrin repeat protein; Provisional	99.77
PHA02795	437	ankyrin-like protein; Provisional	99.76
KOG0508	615	consensus Ankyrin repeat protein [General function	99.76
PHA02798	489	ankyrin-like protein; Provisional	99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.75
PHA02876	682	ankyrin repeat protein; Provisional	99.75
PHA02743	166	Viral ankyrin protein; Provisional	99.75
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.75
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.75
PHA02917	661	ankyrin-like protein; Provisional	99.75
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.73
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.73
PHA02859	209	ankyrin repeat protein; Provisional	99.72
PHA02917	661	ankyrin-like protein; Provisional	99.71
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.69
PHA02884	300	ankyrin repeat protein; Provisional	99.69
KOG0508	615	consensus Ankyrin repeat protein [General function	99.69
PHA02876	682	ankyrin repeat protein; Provisional	99.68
PHA02743	166	Viral ankyrin protein; Provisional	99.68
PHA02795	437	ankyrin-like protein; Provisional	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.67
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.67
PHA02730	672	ankyrin-like protein; Provisional	99.66
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.64
PHA02730	672	ankyrin-like protein; Provisional	99.64
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.6
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.59
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.59
PHA02736	154	Viral ankyrin protein; Provisional	99.58
PHA02741	169	hypothetical protein; Provisional	99.58
KOG0510	929	consensus Ankyrin repeat protein [General function	99.57
PHA02792	631	ankyrin-like protein; Provisional	99.56
PHA02792	631	ankyrin-like protein; Provisional	99.52
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.5
PHA02884	300	ankyrin repeat protein; Provisional	99.49
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.49
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.48
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.48
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.4
KOG0514	452	consensus Ankyrin repeat protein [General function	99.4
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.39
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.38
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
KOG0510	929	consensus Ankyrin repeat protein [General function	99.33
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.29
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.27
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.25
KOG0514	452	consensus Ankyrin repeat protein [General function	99.24
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.18
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.17
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.17
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.13
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.12
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.12
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.08
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.08
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.96
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.96
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.89
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.8
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.8
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.75
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.74
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.4
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.39
PF13606	30	Ank_3: Ankyrin repeat	98.37
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.2
PF13606	30	Ank_3: Ankyrin repeat	98.12
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	97.92
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.92
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.6
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	97.56
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.37
KOG2384	223	consensus Major histocompatibility complex protein	97.33
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.29
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.15
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.08
KOG0511	516	consensus Ankyrin repeat protein [General function	97.06
KOG0511	516	consensus Ankyrin repeat protein [General function	96.84
KOG0783	1267	consensus Uncharacterized conserved protein, conta	96.83
KOG2384	223	consensus Major histocompatibility complex protein	96.77
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	96.59
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.45
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.19
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	96.14
KOG0520	975	consensus Uncharacterized conserved protein, conta	95.78
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	95.61
KOG0783	1267	consensus Uncharacterized conserved protein, conta	95.52
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	95.39
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	95.06
KOG0522	560	consensus Ankyrin repeat protein [General function	94.86
KOG0522	560	consensus Ankyrin repeat protein [General function	94.4
KOG0521	785	consensus Putative GTPase activating proteins (GAP	93.78
KOG0521	785	consensus Putative GTPase activating proteins (GAP	92.83
KOG2505	591	consensus Ankyrin repeat protein [General function	92.15
KOG2505	591	consensus Ankyrin repeat protein [General function	87.23

>PHA02791 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.4e-22  Score=199.59  Aligned_cols=157  Identities=19%  Similarity=0.190  Sum_probs=115.9

Q ss_pred             HHHHHHHhcCCCC----cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc--
Q 006847          324 GLLGLLVEGGADN----VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV--  395 (629)
Q Consensus       324 gLlKsLIEgGaD~----gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e--  395 (629)
                      .++++|++.|+|.    +.||||+|+.+|+.|+|++||+. |+.+.+|.+|+||||+|+.+|+.++|++|++.| +.+  
T Consensus        44 eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~  123 (284)
T PHA02791         44 RLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY  123 (284)
T ss_pred             HHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc
Confidence            5677888888874    77888888888888888888877 557778888888888888888888888888888 443  


Q ss_pred             --cc-chHHHHHHHhCCchHHHHHHHhCccc---cccCchhhHhhhcChHHHHHhhhcCCChhh--hhHhHHH-HHHHhc
Q 006847          396 --AF-LGPLMRAAERGCMQVVQWFVKRGCRD---MDLCLALTAATSSSQVEVAAYLLPHVPQHV--LAALSIE-ILKAAG  466 (629)
Q Consensus       396 --~G-~TPLI~ASenGhLEVVKYLIS~GAdd---~~g~taL~tA~s~gq~eVVkYLLS~vPq~v--l~alsie-ilkAA~  466 (629)
                        .| .||||.|+.+|+.++|+||++.|.+.   ..|.||||.|+..|+.+++++|+++...+-  ....-+- +.-||.
T Consensus       124 ~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~  203 (284)
T PHA02791        124 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID  203 (284)
T ss_pred             CCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHH
Confidence              34 48888888888888888888887642   236888888888888888888888864311  1111111 233454


Q ss_pred             ccCCCCccceeehhhcc
Q 006847          467 ERSGGSLDGVAFLLHSD  483 (629)
Q Consensus       467 ~rs~gs~~GV~flL~Sn  483 (629)
                         .|.++-|.+||...
T Consensus       204 ---~~~~e~v~lLl~~G  217 (284)
T PHA02791        204 ---NKDLEMLQALFKYD  217 (284)
T ss_pred             ---cCCHHHHHHHHHCC
Confidence               56777788877654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.8e-22  Score=198.79  Aligned_cols=129  Identities=12%  Similarity=0.110  Sum_probs=115.0

Q ss_pred             HHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcc-hhhHHhhhcCccceehhhhccC-C
Q 006847          323 QGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVD-LALGFASHYCKIGTMECLVEEG-N  393 (629)
Q Consensus       323 qgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~Dgd-TpLi~AS~nGhLEVVKYLIS~G-d  393 (629)
                      ...+++|++.|+|.      |+|||++|+++|+.|+|++||+. |+.+.++.+|+ |||++|+.+|+.++|++|++.| +
T Consensus        74 ~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~  153 (284)
T PHA02791         74 TKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS  153 (284)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc
Confidence            35678899999983      99999999999999999999998 56788888885 9999999999999999999998 3


Q ss_pred             c-c--ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCch-hhHhhhcChHHHHHhhhcCCCh
Q 006847          394 A-V--AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLA-LTAATSSSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       394 ~-e--~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~ta-L~tA~s~gq~eVVkYLLS~vPq  451 (629)
                      . +  .|.||||+|+.+||+|+|++|++.||+    +..|.|| ||.|+.+++.|+|++|+++--.
T Consensus       154 ~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~  219 (284)
T PHA02791        154 TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN  219 (284)
T ss_pred             ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC
Confidence            2 2  489999999999999999999999997    4457776 9999999999999999998743

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.84  E-value=6.3e-21  Score=187.89  Aligned_cols=157  Identities=19%  Similarity=0.225  Sum_probs=123.6

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHHhh--hhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQIAQ--RNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISIA~--knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .++++|++.|++.      +.|||++|+..|+.|+|++|++...  .+..+.+|.||||+|+.+|+.++|++|++.| |+
T Consensus        49 ~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~  128 (413)
T PHA02875         49 EAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP  128 (413)
T ss_pred             HHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            4678888888863      7789999999999999999988743  2345678899999999999999999999999 55


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChhh--hhHhHHHHHH-
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQHV--LAALSIEILK-  463 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~v--l~alsieilk-  463 (629)
                      +    .|.||||.|+..|+.++|++|++.|++    +..|.||||.|+..|+.+++++|+.+.+.+-  ......-.+- 
T Consensus       129 ~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~  208 (413)
T PHA02875        129 DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCY  208 (413)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHH
Confidence            4    789999999999999999999999986    5679999999999999999999998875432  2222122233 


Q ss_pred             HhcccCCCCccceeehhhcc
Q 006847          464 AAGERSGGSLDGVAFLLHSD  483 (629)
Q Consensus       464 AA~~rs~gs~~GV~flL~Sn  483 (629)
                      |+.   .|.++-|.+||...
T Consensus       209 A~~---~~~~~iv~~Ll~~g  225 (413)
T PHA02875        209 AIE---NNKIDIVRLFIKRG  225 (413)
T ss_pred             HHH---cCCHHHHHHHHHCC
Confidence            443   45678888888754

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.3e-20  Score=185.68  Aligned_cols=129  Identities=15%  Similarity=0.157  Sum_probs=116.3

Q ss_pred             HHHHHHHhcCCCC-------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN-------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~-------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      ..++.|++.|++.       |+|||++|+.+|+.|+|++|++. |+.+..+.+|.||||+|+.+|+.++|++|++.| +.
T Consensus        82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~  161 (413)
T PHA02875         82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL  161 (413)
T ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            4678999988853       89999999999999999999999 668889999999999999999999999999999 44


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCccc----ccc-CchhhHhhhcChHHHHHhhhcCCChh
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCRD----MDL-CLALTAATSSSQVEVAAYLLPHVPQH  452 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAdd----~~g-~taL~tA~s~gq~eVVkYLLS~vPq~  452 (629)
                      +    .|.||||.|+..|+.|+|++|++.|++-    ..| .||++.|+..++.+++++|+.+.+.+
T Consensus       162 ~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~  228 (413)
T PHA02875        162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC  228 (413)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence            3    7999999999999999999999999973    233 58999999999999999999998664

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.82  E-value=2.7e-20  Score=186.24  Aligned_cols=128  Identities=18%  Similarity=0.305  Sum_probs=112.5

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH------------------------hhhhcccCCcchhh
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI------------------------AQRNSLDVDVDLAL  373 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI------------------------A~knak~~DgdTpL  373 (629)
                      .++++|++.|+|.      |.|||+.|+..|+.|+|++|++.                        ++.+..+.+|.|||
T Consensus        49 ~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~L  128 (434)
T PHA02874         49 KIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFL  128 (434)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHH
Confidence            5778999999984      78999999999999999999975                        22445777899999


Q ss_pred             HHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHh
Q 006847          374 GFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAY  444 (629)
Q Consensus       374 i~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkY  444 (629)
                      |+|+++|++++|++|++.| +++    .|.||||.|+++|++++|++|++.|++    +..|.||||.|+..|+.++++|
T Consensus       129 h~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~  208 (434)
T PHA02874        129 HYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKL  208 (434)
T ss_pred             HHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999999999 544    799999999999999999999999995    5678999999999999999999


Q ss_pred             hhcCCCh
Q 006847          445 LLPHVPQ  451 (629)
Q Consensus       445 LLS~vPq  451 (629)
                      |+...+.
T Consensus       209 Ll~~g~~  215 (434)
T PHA02874        209 LIDHGNH  215 (434)
T ss_pred             HHhCCCC
Confidence            9988754

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.81  E-value=6e-20  Score=182.95  Aligned_cols=129  Identities=22%  Similarity=0.264  Sum_probs=118.0

Q ss_pred             HHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCc------chhhHHhhhcCc--cceehh
Q 006847          323 QGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDV------DLALGFASHYCK--IGTMEC  387 (629)
Q Consensus       323 qgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~Dg------dTpLi~AS~nGh--LEVVKY  387 (629)
                      ..++++|++.|+|.      |+|||++|+.+|+.|+|++|++. |+.+..+..|      .|||++|+.+|+  .++|++
T Consensus       156 ~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~  235 (480)
T PHA03100        156 LKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNY  235 (480)
T ss_pred             HHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHH
Confidence            45788999999984      89999999999999999999998 5577788888      899999999999  999999


Q ss_pred             hhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCCh
Q 006847          388 LVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       388 LIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq  451 (629)
                      |++.| +++    .|.||||.|+.+|+.++|++|++.||+    +..|.|||+.|+..++.+++++|+.+.|.
T Consensus       236 Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~  308 (480)
T PHA03100        236 LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS  308 (480)
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Confidence            99999 544    799999999999999999999999996    56799999999999999999999999873

>PHA02741 hypothetical protein; Provisional

Probab=99.81  E-value=1.2e-19  Score=162.12  Aligned_cols=123  Identities=19%  Similarity=0.217  Sum_probs=105.9

Q ss_pred             HHHHHhcCCCCcchhHHHHhhcCCHHHHHHHHHH-------hhhhcccCCcchhhHHhhhcCc----cceehhhhccC-C
Q 006847          326 LGLLVEGGADNVNQCFLEASRFGSTELVRILLQI-------AQRNSLDVDVDLALGFASHYCK----IGTMECLVEEG-N  393 (629)
Q Consensus       326 lKsLIEgGaD~gnTPLL~AS~~GhLEVVKyLISI-------A~knak~~DgdTpLi~AS~nGh----LEVVKYLIS~G-d  393 (629)
                      ++-|+..--..|.||||+|+++|++|+|++|+..       ++.+.+|.+|+||||+|+++|+    .+++++|++.| +
T Consensus        10 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad   89 (169)
T PHA02741         10 LEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD   89 (169)
T ss_pred             HHHHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC
Confidence            3334443333599999999999999999998642       6688999999999999999999    69999999999 3


Q ss_pred             cc-----ccchHHHHHHHhCCchHHHHHHH-hCcc----ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          394 AV-----AFLGPLMRAAERGCMQVVQWFVK-RGCR----DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       394 ~e-----~G~TPLI~ASenGhLEVVKYLIS-~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                      .+     .|.||||.|+.+|+.++|++|++ .|++    +..|.|||+.|+..++.+++++|+..
T Consensus        90 in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         90 INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            22     69999999999999999999998 5986    56799999999999999999998863

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.81  E-value=8.7e-20  Score=182.63  Aligned_cols=123  Identities=20%  Similarity=0.225  Sum_probs=93.4

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .++++|++.|+|.      |.|||++|+.+|+.|+|++|++. ++.+.+|.+|.||||+|+++|+++++++|++.| +.+
T Consensus       105 ~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n  184 (434)
T PHA02874        105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN  184 (434)
T ss_pred             HHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC
Confidence            4677888888873      78888888888888888888887 557778888888888888888888888888888 333


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhc
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLP  447 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS  447 (629)
                          .|.||||.|++.|++++|+||++.|++    +..|.||||.|+..++ +++++|+.
T Consensus       185 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~  243 (434)
T PHA02874        185 VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLIN  243 (434)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHHc
Confidence                688888888888888888888888875    3346666666665543 34444443

>PHA03095 ankyrin-like protein; Provisional

Probab=99.80  E-value=3.6e-19  Score=176.56  Aligned_cols=246  Identities=20%  Similarity=0.205  Sum_probs=168.8

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhc--CCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCcc--ceehhhhccC
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRF--GSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKI--GTMECLVEEG  392 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~--GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhL--EVVKYLIS~G  392 (629)
                      .++++|++.|+|.      |+|||+.|..+  ++.+++++|++. ++.+.+|.+|+||||+|+.+|+.  .++++|++.|
T Consensus       168 ~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g  247 (471)
T PHA03095        168 ELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAG  247 (471)
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcC
Confidence            5789999999984      99999999876  788999999999 66999999999999999999986  6899999999


Q ss_pred             -Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChhhhhHhHHHHHH
Q 006847          393 -NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILK  463 (629)
Q Consensus       393 -d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~vl~alsieilk  463 (629)
                       +++    .|.||||+|+..|+.++|++|++.||+    +..|.|||+.|+..++.+++++|++.-|..-.....   +.
T Consensus       248 ~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~~~~~---~~  324 (471)
T PHA03095        248 ISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAAT---LN  324 (471)
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHHHHHH---HH
Confidence             544    799999999999999999999999997    668999999999999999999999999876433222   22


Q ss_pred             HhcccCCCCccceeehhhcccCCChhhhHHHHHHhhccC----CCCCChhHHHHHHHhhcHHHHHHHHhcc-chhhhHHH
Q 006847          464 AAGERSGGSLDGVAFLLHSDFLGDPAATYAVADSIARSD----DEGVAPDLKVFLREHWSEAAFLDGLKQG-DVHYMNLL  538 (629)
Q Consensus       464 AA~~rs~gs~~GV~flL~SnFL~d~~aTy~~Ad~iA~~~----~~~v~~~lk~fL~e~WS~~AF~~G~~~g-~~Hf~n~m  538 (629)
                      .+.... ..+            ........++..+.+..    .+.+....+.|+.+-..|=+.-.-.+.| ..-...++
T Consensus       325 ~~~~~~-~~~------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ei~~mk~~~i~~~~s~~d~~  391 (471)
T PHA03095        325 TASVAG-GDI------------PSDATRLCVAKVVLRGAFSLLPEPIRAYHADFIRECEAEIAVMRTTRIGTGVSLLDIL  391 (471)
T ss_pred             HHhhcc-CCC------------ccHHHHHHHHHHHHhcchhhccHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCcHHHHH
Confidence            222222 110            00001112222222110    0122344566666666666666666777 44444554


Q ss_pred             HHHhhcCCCccccCCCcchhhhhhhhhhhHHHHhcCCccchhhhhhHHHHHHHH
Q 006847          539 RILKWGESPICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAVRR  592 (629)
Q Consensus       539 rv~k~g~Spl~l~dLP~~l~vaiaYlPLYreC~~~~G~LlsQrlRGqLveA~~r  592 (629)
                      .   ....++++-.  -..-.-...+|.|++-++.  .+..-+.|-.+++-+-.
T Consensus       392 ~---~~~~~~~~~~--~~~~~~~~~~~iY~~~i~~--~i~~~~~r~~li~~~~~  438 (471)
T PHA03095        392 F---ARNPDILLVS--NASLRKKARLTVYGKALRA--RIEEMRKRSKLVERIIK  438 (471)
T ss_pred             H---ccCCcccccc--hHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            4   2222333211  1222346789999887753  33344566666665443

>PHA02946 ankyin-like protein; Provisional

Probab=99.80  E-value=9.3e-20  Score=187.52  Aligned_cols=122  Identities=16%  Similarity=0.099  Sum_probs=83.8

Q ss_pred             HHHHHHhcCCCC------cchhHHHHhhcC--CHHHHHHHHHHhhhhcccCCcchhhHHhhhcCc-cceehhhhccCCc-
Q 006847          325 LLGLLVEGGADN------VNQCFLEASRFG--STELVRILLQIAQRNSLDVDVDLALGFASHYCK-IGTMECLVEEGNA-  394 (629)
Q Consensus       325 LlKsLIEgGaD~------gnTPLL~AS~~G--hLEVVKyLISIA~knak~~DgdTpLi~AS~nGh-LEVVKYLIS~Gd~-  394 (629)
                      .+++|++.|+|.      |+||||+|+.+|  +.|+|++|++-|+.+.+|.+|.|||++|+++++ .+++++|++.|+. 
T Consensus       190 ~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        190 TISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVI  269 (446)
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCC
Confidence            456677777763      777777777765  667777777666677777777777777777766 4677777776521 


Q ss_pred             -------------------------cccchHHHHHHHhCCchHHHHHHHhCccccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          395 -------------------------VAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       395 -------------------------e~G~TPLI~ASenGhLEVVKYLIS~GAdd~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                                               +.|.||||+|+++|+.|+||||++.|+   .+.|||+.|+..++.|+|++|+++-
T Consensus       270 ~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~---~~~t~L~~A~~~~~~~~v~~Ll~~g  346 (446)
T PHA02946        270 TDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI---ICEDAMYYAVLSEYETMVDYLLFNH  346 (446)
T ss_pred             CCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC---ccccHHHHHHHhCHHHHHHHHHHCC
Confidence                                     124577777777777777777777764   3567777777777777777777655

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.80  E-value=1e-19  Score=198.66  Aligned_cols=127  Identities=21%  Similarity=0.150  Sum_probs=118.0

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC---C
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---N  393 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G---d  393 (629)
                      .+++.|++.|+|.      |.||||.|+.+|+.|+|++|++. ++.|.+|.+|+||||+|+.+||.+++++|++.|   +
T Consensus       539 ~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~  618 (823)
T PLN03192        539 ALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISD  618 (823)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC
Confidence            4788999999984      99999999999999999999998 668999999999999999999999999999988   5


Q ss_pred             ccccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          394 AVAFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       394 ~e~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      +..+.+||+.|+.+|++++|++|++.|++    |..|.||||.|+..|+.+++++|+.+..
T Consensus       619 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        619 PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            55888999999999999999999999997    6789999999999999999999998763

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.80  E-value=1.6e-19  Score=183.08  Aligned_cols=125  Identities=20%  Similarity=0.140  Sum_probs=113.4

Q ss_pred             HHHHHHHhcCCCC-------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN-------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~-------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .++++|++.|+|.       |+||||+|+.+|+.|+|++||+. |+.+..|.+|.||||+|+++|+.++|++|++.| ++
T Consensus       148 ~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i  227 (477)
T PHA02878        148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST  227 (477)
T ss_pred             HHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4788999999993       89999999999999999999998 668889999999999999999999999999999 55


Q ss_pred             c----ccchHHHHHHHh-CCchHHHHHHHhCccc-----cccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          395 V----AFLGPLMRAAER-GCMQVVQWFVKRGCRD-----MDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       395 e----~G~TPLI~ASen-GhLEVVKYLIS~GAdd-----~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      +    .|.||||+|+.+ ++.++|++|++.|++-     ..|.||||.|  .++.+++++|+.+..
T Consensus       228 n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~ga  291 (477)
T PHA02878        228 DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGA  291 (477)
T ss_pred             CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCC
Confidence            4    799999999987 6899999999999972     3699999999  577899999999863

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.79  E-value=1.7e-19  Score=179.76  Aligned_cols=128  Identities=20%  Similarity=0.237  Sum_probs=110.9

Q ss_pred             HHHHHHHhcCCCC------cchhHHH-----HhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhh--hcCccceehhhh
Q 006847          324 GLLGLLVEGGADN------VNQCFLE-----ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFAS--HYCKIGTMECLV  389 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~-----AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS--~nGhLEVVKYLI  389 (629)
                      .++++|++.|+|.      +.|||++     |+..|+.|+|++|++. |+.+..|.+|.|||++|+  ..|+.++|++|+
T Consensus        49 ~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll  128 (480)
T PHA03100         49 DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLL  128 (480)
T ss_pred             HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHH
Confidence            5788888889884      7789999     9999999999999998 557888888999999999  999999999999


Q ss_pred             ccC-Ccc----ccchHHHHHHHhC--CchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCCh
Q 006847          390 EEG-NAV----AFLGPLMRAAERG--CMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       390 S~G-d~e----~G~TPLI~ASenG--hLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq  451 (629)
                      +.| +.+    .|.||||.|++.|  +.++|++|++.|++    +..|.||||.|+..++.+++++|+.+...
T Consensus       129 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~  201 (480)
T PHA03100        129 DNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD  201 (480)
T ss_pred             HcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            999 443    7899999999999  89999999999986    45788999999999999999999987643

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.79  E-value=2.3e-19  Score=182.01  Aligned_cols=128  Identities=17%  Similarity=0.126  Sum_probs=109.2

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH--------------------------------------
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI--------------------------------------  359 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI--------------------------------------  359 (629)
                      .++++|++.|+|.      |.||||+|+..|+.++|++|++.                                      
T Consensus        51 e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~  130 (477)
T PHA02878         51 DVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQT  130 (477)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCccc
Confidence            5678899999884      89999999998888877777753                                      


Q ss_pred             ---------------------------hhhhcccCC-cchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHH
Q 006847          360 ---------------------------AQRNSLDVD-VDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAE  406 (629)
Q Consensus       360 ---------------------------A~knak~~D-gdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASe  406 (629)
                                                 |+.+..+.+ |.||||+|+.+|+.++|++|++.| +++    .|.||||.|++
T Consensus       131 ~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~  210 (477)
T PHA02878        131 IDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVK  210 (477)
T ss_pred             CcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence                                       112335556 999999999999999999999999 554    79999999999


Q ss_pred             hCCchHHHHHHHhCcc----ccccCchhhHhhhc-ChHHHHHhhhcCCCh
Q 006847          407 RGCMQVVQWFVKRGCR----DMDLCLALTAATSS-SQVEVAAYLLPHVPQ  451 (629)
Q Consensus       407 nGhLEVVKYLIS~GAd----d~~g~taL~tA~s~-gq~eVVkYLLS~vPq  451 (629)
                      +|+.++|++|++.|++    +..|.||||.|+.. ++.+++++|+.+...
T Consensus       211 ~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad  260 (477)
T PHA02878        211 HYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD  260 (477)
T ss_pred             hCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC
Confidence            9999999999999996    56799999999976 689999999998743

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=5.6e-20  Score=177.88  Aligned_cols=131  Identities=21%  Similarity=0.197  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHhcCCCCcchhHHHHhhcCCHHHHHHHHHHhh--hhcccCCcchhhHHhhhcCccceehhhhcc-C-Cc
Q 006847          319 ATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQ--RNSLDVDVDLALGFASHYCKIGTMECLVEE-G-NA  394 (629)
Q Consensus       319 a~~iqgLlKsLIEgGaD~gnTPLL~AS~~GhLEVVKyLISIA~--knak~~DgdTpLi~AS~nGhLEVVKYLIS~-G-d~  394 (629)
                      +..+|.-.|+|--..=-.|.||||||+.+||.|+|..|+|-.+  .+.+|-.||||||.|+.+|..||||-|+.. | |+
T Consensus        20 eel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv   99 (226)
T KOG4412|consen   20 EELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV   99 (226)
T ss_pred             HHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc
Confidence            4455665666644322258999999999999999999998655  555777799999999999999999999998 6 44


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +    +|.||||+|+-+|.+||+|+|++.|+.    |..++||||.|++.|+.+|++||++--
T Consensus       100 na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen  100 NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             ceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence            4    799999999999999999999999995    667999999999999999999999865

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.79  E-value=3.1e-19  Score=182.52  Aligned_cols=129  Identities=16%  Similarity=0.184  Sum_probs=109.0

Q ss_pred             HHHHHHHhcCCCC-------cchhHHHHhh--cCCHHHHHHHHHH-hhhhc-ccCCcchhhHHhhhcC----ccceehhh
Q 006847          324 GLLGLLVEGGADN-------VNQCFLEASR--FGSTELVRILLQI-AQRNS-LDVDVDLALGFASHYC----KIGTMECL  388 (629)
Q Consensus       324 gLlKsLIEgGaD~-------gnTPLL~AS~--~GhLEVVKyLISI-A~kna-k~~DgdTpLi~AS~nG----hLEVVKYL  388 (629)
                      .++++|++.|||.       |+|||++|.+  +|+.|+|++||+. |+.+. .+.+|.|||++|++++    ++++|++|
T Consensus       125 eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~L  204 (494)
T PHA02989        125 DMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYL  204 (494)
T ss_pred             HHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHH
Confidence            5788899999884       7899998764  4688999999988 55666 5778889999887764    88999999


Q ss_pred             hccC-Ccc------------------------------------------ccchHHHHHHHhCCchHHHHHHHhCcc---
Q 006847          389 VEEG-NAV------------------------------------------AFLGPLMRAAERGCMQVVQWFVKRGCR---  422 (629)
Q Consensus       389 IS~G-d~e------------------------------------------~G~TPLI~ASenGhLEVVKYLIS~GAd---  422 (629)
                      ++.| +++                                          .|+||||.|++.|+.++|++|++.||+   
T Consensus       205 l~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~  284 (494)
T PHA02989        205 IKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYN  284 (494)
T ss_pred             HhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccc
Confidence            9988 322                                          289999999999999999999999997   


Q ss_pred             -ccccCchhhHhhhcChHHHHHhhhcCCChh
Q 006847          423 -DMDLCLALTAATSSSQVEVAAYLLPHVPQH  452 (629)
Q Consensus       423 -d~~g~taL~tA~s~gq~eVVkYLLS~vPq~  452 (629)
                       +..|.|||+.|+..++.+++++|+..-|..
T Consensus       285 ~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        285 VSKDGDTVLTYAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcCCCh
Confidence             567999999999999999999999988754

>PHA02798 ankyrin-like protein; Provisional

Probab=99.78  E-value=4.3e-19  Score=181.34  Aligned_cols=98  Identities=20%  Similarity=0.213  Sum_probs=51.4

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcC---CHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCc---cceehhhhc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFG---STELVRILLQI-AQRNSLDVDVDLALGFASHYCK---IGTMECLVE  390 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~G---hLEVVKyLISI-A~knak~~DgdTpLi~AS~nGh---LEVVKYLIS  390 (629)
                      .++++|++.|||.      |.||||+|+.+|   +.|+|++||+. |+.+.+|.+|.||||+|++.|+   ++++++|++
T Consensus        90 ~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~  169 (489)
T PHA02798         90 DIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE  169 (489)
T ss_pred             HHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence            4555556666552      556666655554   45566666555 4455555556666666655555   555555555


Q ss_pred             cC-Ccc-----ccchHHHHHHHh----CCchHHHHHHHhCc
Q 006847          391 EG-NAV-----AFLGPLMRAAER----GCMQVVQWFVKRGC  421 (629)
Q Consensus       391 ~G-d~e-----~G~TPLI~ASen----GhLEVVKYLIS~GA  421 (629)
                      .| |++     .|.||||.+..+    ++.+|||+|++.|+
T Consensus       170 ~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga  210 (489)
T PHA02798        170 KGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF  210 (489)
T ss_pred             hCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCC
Confidence            55 221     244444444332    23444444444443

>PHA03095 ankyrin-like protein; Provisional

Probab=99.77  E-value=8.9e-19  Score=173.76  Aligned_cols=126  Identities=18%  Similarity=0.166  Sum_probs=96.3

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcC---CHHHHHHHHHH-hhhhcccCCcchhhHHhhhcC-ccceehhhhccC
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFG---STELVRILLQI-AQRNSLDVDVDLALGFASHYC-KIGTMECLVEEG  392 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~G---hLEVVKyLISI-A~knak~~DgdTpLi~AS~nG-hLEVVKYLIS~G  392 (629)
                      ..++.|++.|+|.      |+|||+.|+.+|   +.|+|++|++. |+.+.++.+|.||||+|+++| +.+++++|++.|
T Consensus        28 ~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~g  107 (471)
T PHA03095         28 EEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAG  107 (471)
T ss_pred             HHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcC
Confidence            4466777788874      778888888887   78888888887 557778888888888888888 588888888888


Q ss_pred             -Ccc----ccchHHHHHH--HhCCchHHHHHHHhCcc----ccccCchhhHhhhcC--hHHHHHhhhcCC
Q 006847          393 -NAV----AFLGPLMRAA--ERGCMQVVQWFVKRGCR----DMDLCLALTAATSSS--QVEVAAYLLPHV  449 (629)
Q Consensus       393 -d~e----~G~TPLI~AS--enGhLEVVKYLIS~GAd----d~~g~taL~tA~s~g--q~eVVkYLLS~v  449 (629)
                       +++    .|.||||.|+  .+++.++|++|++.|++    +..|.||||.|+..+  ..+++++|+.+.
T Consensus       108 a~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g  177 (471)
T PHA03095        108 ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAG  177 (471)
T ss_pred             CCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC
Confidence             443    5788888888  44678888888888885    456788888777665  567888888774

>PHA02946 ankyin-like protein; Provisional

Probab=99.77  E-value=8.1e-19  Score=180.61  Aligned_cols=125  Identities=20%  Similarity=0.180  Sum_probs=97.2

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCc--cceehhhhccC-C
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCK--IGTMECLVEEG-N  393 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGh--LEVVKYLIS~G-d  393 (629)
                      .++++|++.|+|.      |+||||+|+.+|+.|+|++||+. |+.+.+|.+|.||||||+.+++  ++++++|++.| +
T Consensus        53 ~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gad  132 (446)
T PHA02946         53 RFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAK  132 (446)
T ss_pred             HHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence            4788899999984      89999999999999999999998 6688899999999999987764  78899999988 3


Q ss_pred             cc-----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcC--hHHHHHhhhcCC
Q 006847          394 AV-----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSS--QVEVAAYLLPHV  449 (629)
Q Consensus       394 ~e-----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~g--q~eVVkYLLS~v  449 (629)
                      ++     .|.|||+ |+.+|+.+||++|++.|++    +..|.||||.|+..+  +.+++++|+++.
T Consensus       133 in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G  198 (446)
T PHA02946        133 INNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLG  198 (446)
T ss_pred             cccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcC
Confidence            32     6788885 6666777777777777775    456777777665533  356777777654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.77  E-value=8.9e-19  Score=179.21  Aligned_cols=158  Identities=18%  Similarity=0.154  Sum_probs=124.0

Q ss_pred             HHHHHHHHHhcCCCC------cchhHHHHhhc---CCHHHHHHHHHH-hhh-hcccCCcchhhHHhhh--cCccceehhh
Q 006847          322 IQGLLGLLVEGGADN------VNQCFLEASRF---GSTELVRILLQI-AQR-NSLDVDVDLALGFASH--YCKIGTMECL  388 (629)
Q Consensus       322 iqgLlKsLIEgGaD~------gnTPLL~AS~~---GhLEVVKyLISI-A~k-nak~~DgdTpLi~AS~--nGhLEVVKYL  388 (629)
                      ...++++|++.|||.      |.|||+.|...   |+.|+|++||+. |+. +.+|.+|.||||+|..  +++.++|++|
T Consensus        87 ~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~L  166 (494)
T PHA02989         87 IKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKIL  166 (494)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            456899999999994      99999987654   789999999999 667 7899999999999865  5789999999


Q ss_pred             hccC-Ccc-----ccchHHHHHHHhC----CchHHHHHHHhCccc-----------------------------------
Q 006847          389 VEEG-NAV-----AFLGPLMRAAERG----CMQVVQWFVKRGCRD-----------------------------------  423 (629)
Q Consensus       389 IS~G-d~e-----~G~TPLI~ASenG----hLEVVKYLIS~GAdd-----------------------------------  423 (629)
                      ++.| |++     .|.|||+.|+.++    +.++|++|++.|++-                                   
T Consensus       167 l~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~  246 (494)
T PHA02989        167 LSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKY  246 (494)
T ss_pred             HHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhC
Confidence            9999 533     6999999998775    899999999999951                                   


Q ss_pred             -------cccCchhhHhhhcChHHHHHhhhcCCCh--hhhhHhHHHHHHHhcccCCCCccceeehhhc
Q 006847          424 -------MDLCLALTAATSSSQVEVAAYLLPHVPQ--HVLAALSIEILKAAGERSGGSLDGVAFLLHS  482 (629)
Q Consensus       424 -------~~g~taL~tA~s~gq~eVVkYLLS~vPq--~vl~alsieilkAA~~rs~gs~~GV~flL~S  482 (629)
                             ..|.||||.|+..++.+++++|+.....  .+....-+-+-.|+.   .|..+=|..+|..
T Consensus       247 advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~---~~~~~iv~~LL~~  311 (494)
T PHA02989        247 IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIK---HGNIDMLNRILQL  311 (494)
T ss_pred             CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHH---cCCHHHHHHHHhc
Confidence                   1288999999999999999999998632  222222222333333   2455666666664

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.77  E-value=1.4e-18  Score=161.34  Aligned_cols=125  Identities=14%  Similarity=0.058  Sum_probs=101.9

Q ss_pred             HHHHHHhcCCC---CcchhHHHHhhcC--CHHHHHHHHHH-hhhhccc-CCcchhhHHhhh---cCccceehhhhccC-C
Q 006847          325 LLGLLVEGGAD---NVNQCFLEASRFG--STELVRILLQI-AQRNSLD-VDVDLALGFASH---YCKIGTMECLVEEG-N  393 (629)
Q Consensus       325 LlKsLIEgGaD---~gnTPLL~AS~~G--hLEVVKyLISI-A~knak~-~DgdTpLi~AS~---nGhLEVVKYLIS~G-d  393 (629)
                      .+|.|++.+..   .|.|||+.|+.+|  +.|+|++||+. |+.+.++ .+|.||||+|+.   +++.++|++|++.| |
T Consensus        36 ~vk~Li~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad  115 (209)
T PHA02859         36 GVKKWIKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS  115 (209)
T ss_pred             HHHHHHHhhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC
Confidence            34455554433   2999999998754  89999999998 6688887 479999999764   45899999999999 5


Q ss_pred             cc----ccchHHHHHHH--hCCchHHHHHHHhCcc----ccccCchhhH-hhhcChHHHHHhhhcCC
Q 006847          394 AV----AFLGPLMRAAE--RGCMQVVQWFVKRGCR----DMDLCLALTA-ATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       394 ~e----~G~TPLI~ASe--nGhLEVVKYLIS~GAd----d~~g~taL~t-A~s~gq~eVVkYLLS~v  449 (629)
                      ++    .|.||||.|..  +|++++|++||+.|++    |..|.||||. |...++.++++||+++.
T Consensus       116 in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~G  182 (209)
T PHA02859        116 ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLG  182 (209)
T ss_pred             CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcC
Confidence            55    79999999865  4789999999999997    5679999995 56678999999999765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.76  E-value=1.1e-18  Score=182.99  Aligned_cols=128  Identities=13%  Similarity=0.145  Sum_probs=112.9

Q ss_pred             HHHHHHHHhcCCCC----cchhHHHHhhcCCHHHHHHHHHHhh-h-hcc-----cCCcchhhHHhhhcCccceehhhhcc
Q 006847          323 QGLLGLLVEGGADN----VNQCFLEASRFGSTELVRILLQIAQ-R-NSL-----DVDVDLALGFASHYCKIGTMECLVEE  391 (629)
Q Consensus       323 qgLlKsLIEgGaD~----gnTPLL~AS~~GhLEVVKyLISIA~-k-nak-----~~DgdTpLi~AS~nGhLEVVKYLIS~  391 (629)
                      -..+++||+.|||.    +.|||+.|+.+|+.|+|++||+.+. . +..     +..+.||++.|+.++++|++++||+.
T Consensus       131 ~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~  210 (437)
T PHA02795        131 IDIVDFMVDHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY  210 (437)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC
Confidence            35789999999995    6799999999999999999999954 2 222     24477899999999999999999999


Q ss_pred             C-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcC--------hHHHHHhhhcCCC
Q 006847          392 G-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSS--------QVEVAAYLLPHVP  450 (629)
Q Consensus       392 G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~g--------q~eVVkYLLS~vP  450 (629)
                      | |++    .|.||||.|+.+|+.|+|++|++.||+    +..|.||||.|+..|        +.+++++|+++.|
T Consensus       211 GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        211 IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            9 555    799999999999999999999999997    667999999999998        5799999999876

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.76  E-value=3.6e-18  Score=181.33  Aligned_cols=126  Identities=22%  Similarity=0.243  Sum_probs=117.6

Q ss_pred             HHHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-C
Q 006847          322 IQGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-N  393 (629)
Q Consensus       322 iqgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d  393 (629)
                      =-+.+|+|++.||+.      .+|||.-|+.-||+|+||||+.- |+.+--|.-|.|+|+.|++.||.||++||.+-| |
T Consensus        96 Hl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD  175 (615)
T KOG0508|consen   96 HLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD  175 (615)
T ss_pred             cHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCC
Confidence            457899999999984      45999999999999999999987 778889999999999999999999999999999 5


Q ss_pred             cc----ccchHHHHHHHhCCchHHHHHHHhCcc---ccccCchhhHhhhcChHHHHHhhhc
Q 006847          394 AV----AFLGPLMRAAERGCMQVVQWFVKRGCR---DMDLCLALTAATSSSQVEVAAYLLP  447 (629)
Q Consensus       394 ~e----~G~TPLI~ASenGhLEVVKYLIS~GAd---d~~g~taL~tA~s~gq~eVVkYLLS  447 (629)
                      ++    .|+|.||-++|.||+|+||.|++.|+.   |.-|.|||..|.-.|+.+||+||++
T Consensus       176 vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  176 VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            55    899999999999999999999999996   5569999999999999999999998

>PHA02798 ankyrin-like protein; Provisional

Probab=99.76  E-value=1.8e-18  Score=176.84  Aligned_cols=126  Identities=12%  Similarity=0.169  Sum_probs=112.5

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhc-----CCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcC---ccceehhh
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRF-----GSTELVRILLQI-AQRNSLDVDVDLALGFASHYC---KIGTMECL  388 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~-----GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nG---hLEVVKYL  388 (629)
                      .++++|++.|+|.      |.|||+.|..+     |+.|+|++||+. |+.|.+|.+|+||||+|+.++   +.+++++|
T Consensus        52 ~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~L  131 (489)
T PHA02798         52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFM  131 (489)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHH
Confidence            4788999999994      99999998865     789999999999 669999999999999999986   78999999


Q ss_pred             hccC-Ccc----ccchHHHHHHHhCC---chHHHHHHHhCcc-----ccccCchhhHhhhc----ChHHHHHhhhcCC
Q 006847          389 VEEG-NAV----AFLGPLMRAAERGC---MQVVQWFVKRGCR-----DMDLCLALTAATSS----SQVEVAAYLLPHV  449 (629)
Q Consensus       389 IS~G-d~e----~G~TPLI~ASenGh---LEVVKYLIS~GAd-----d~~g~taL~tA~s~----gq~eVVkYLLS~v  449 (629)
                      ++.| |++    .|.||||.|++.|+   .+||++|++.|++     +..+.||||.+...    ++.++++||+.+.
T Consensus       132 l~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~G  209 (489)
T PHA02798        132 IENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNG  209 (489)
T ss_pred             HHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCC
Confidence            9999 554    79999999999998   9999999999997     23588999998754    4899999999875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.75  E-value=1.4e-18  Score=151.26  Aligned_cols=114  Identities=14%  Similarity=0.103  Sum_probs=95.3

Q ss_pred             CcchhHHHHhhcCCHHHHHHHHHHh---h-----hhcccCCcchhhHHhhhcCccc---eehhhhccC-Ccc-----ccc
Q 006847          336 NVNQCFLEASRFGSTELVRILLQIA---Q-----RNSLDVDVDLALGFASHYCKIG---TMECLVEEG-NAV-----AFL  398 (629)
Q Consensus       336 ~gnTPLL~AS~~GhLEVVKyLISIA---~-----knak~~DgdTpLi~AS~nGhLE---VVKYLIS~G-d~e-----~G~  398 (629)
                      .|.||||+|+++|+.  +..|+...   .     .+.+|.+|.||||+|+++|+++   ++++|++.| +.+     .|.
T Consensus        16 ~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~   93 (154)
T PHA02736         16 EGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGN   93 (154)
T ss_pred             CCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCC
Confidence            499999999999994  44443321   1     2347889999999999999985   689999999 322     699


Q ss_pred             hHHHHHHHhCCchHHHHHHH-hCcc----ccccCchhhHhhhcChHHHHHhhhcCCCh
Q 006847          399 GPLMRAAERGCMQVVQWFVK-RGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       399 TPLI~ASenGhLEVVKYLIS-~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq  451 (629)
                      ||||+|+++|++++|++|++ .|++    +..|.|||+.|+..++.+++++|+...-+
T Consensus        94 T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         94 TPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999998 5886    56799999999999999999999987643

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.75  E-value=1.1e-18  Score=184.56  Aligned_cols=129  Identities=19%  Similarity=0.241  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hh-hhcccCCcchhhHHhh---------------
Q 006847          321 VIQGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQ-RNSLDVDVDLALGFAS---------------  377 (629)
Q Consensus       321 ~iqgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~-knak~~DgdTpLi~AS---------------  377 (629)
                      +|+.+  -|++.|++.      +.||||.|+++||+|+|+.||+. .+ .+..|..|.||||+|+               
T Consensus        21 ~~~~~--~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~   98 (682)
T PHA02876         21 AIDNY--DLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLD   98 (682)
T ss_pred             HHHHH--HHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccc
Confidence            45555  388888663      78999999999999999999998 22 3456778999999777               


Q ss_pred             -------------------------------------------------------hcCccceehhhhccC-Ccc----cc
Q 006847          378 -------------------------------------------------------HYCKIGTMECLVEEG-NAV----AF  397 (629)
Q Consensus       378 -------------------------------------------------------~nGhLEVVKYLIS~G-d~e----~G  397 (629)
                                                                             ++|+++++|+|++.| +++    .|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G  178 (682)
T PHA02876         99 CDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYC  178 (682)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCC
Confidence                                                                   568899999999999 554    69


Q ss_pred             chHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCCh
Q 006847          398 LGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       398 ~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq  451 (629)
                      +||||.|+++|++++||||++.||+    +..|.|||+.|+..++.+++++|+..-+.
T Consensus       179 ~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~  236 (682)
T PHA02876        179 ITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSN  236 (682)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            9999999999999999999999997    45789999999999999999999987654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.75  E-value=2.9e-18  Score=153.95  Aligned_cols=114  Identities=17%  Similarity=0.165  Sum_probs=99.3

Q ss_pred             cchhHHHHhhcCCH----HHHHHHHHH-hhhhcccCCcchhhHHhhhcCccce---ehhhhccC-Ccc-----ccchHHH
Q 006847          337 VNQCFLEASRFGST----ELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGT---MECLVEEG-NAV-----AFLGPLM  402 (629)
Q Consensus       337 gnTPLL~AS~~GhL----EVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEV---VKYLIS~G-d~e-----~G~TPLI  402 (629)
                      +.++|+.|++.|.+    |++++|++- +..+.+|.+|.||||||+.+|+.++   +++|++.| +++     .|+||||
T Consensus        20 ~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh   99 (166)
T PHA02743         20 EQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLH   99 (166)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHH
Confidence            66799999999999    555566665 4577889999999999999999876   79999999 322     5999999


Q ss_pred             HHHHhCCchHHHHHHH-hCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          403 RAAERGCMQVVQWFVK-RGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       403 ~ASenGhLEVVKYLIS-~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      +|+.+|++++|+||++ .|++    +..|.|||+.|+..++.+++++|+.+..
T Consensus       100 ~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  152 (166)
T PHA02743        100 IAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGA  152 (166)
T ss_pred             HHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999995 7986    5679999999999999999999998763

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.2e-18  Score=168.66  Aligned_cols=136  Identities=24%  Similarity=0.246  Sum_probs=117.6

Q ss_pred             CccccchHHHHHHHHHHHHhcCC--C----CcchhHHHHhhcCCHHHHHHHHHH--hhhhcccCCcchhhHHhhhcCccc
Q 006847          312 GWASGISATVIQGLLGLLVEGGA--D----NVNQCFLEASRFGSTELVRILLQI--AQRNSLDVDVDLALGFASHYCKIG  383 (629)
Q Consensus       312 gwasG~sa~~iqgLlKsLIEgGa--D----~gnTPLL~AS~~GhLEVVKyLISI--A~knak~~DgdTpLi~AS~nGhLE  383 (629)
                      +|+.-...+-|-.++-+  +-+.  |    -|+||||.|+.+|..|||+-||..  |+.|.+++.|-||||||+-+|.+|
T Consensus        43 Hwa~S~g~~eiv~fLls--q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~e  120 (226)
T KOG4412|consen   43 HWACSFGHVEIVYFLLS--QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLE  120 (226)
T ss_pred             eeeeecCchhHHHHHHh--cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhh
Confidence            78876665544433322  2222  1    299999999999999999999999  779999999999999999999999


Q ss_pred             eehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          384 TMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       384 VVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      |+..|++.| ++.    .|-||||+||..|.|+||+|||+.|+.    |..|.||||.|+--+|.||+..|+++.
T Consensus       121 IaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g  195 (226)
T KOG4412|consen  121 IAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAG  195 (226)
T ss_pred             HHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhc
Confidence            999999999 333    799999999999999999999999994    778999999999999999999998876

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.75  E-value=2.3e-18  Score=190.35  Aligned_cols=126  Identities=12%  Similarity=0.073  Sum_probs=104.7

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCH--HHHHHHHHH-hhhhcccCCcchhhHHh------------------
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGST--ELVRILLQI-AQRNSLDVDVDLALGFA------------------  376 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhL--EVVKyLISI-A~knak~~DgdTpLi~A------------------  376 (629)
                      .++++|++.|+|.      |+||||+|+++|+.  |+|++||+. |+.+.+|.+|.|||++|                  
T Consensus       193 eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~  272 (764)
T PHA02716        193 DILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIES  272 (764)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHh
Confidence            5789999999995      89999999999965  999999999 66999999999999875                  


Q ss_pred             -------------------hhcCccceehhhhccC-Ccc----ccchHHHHHHH--hCCchHHHHHHHhCcc----cccc
Q 006847          377 -------------------SHYCKIGTMECLVEEG-NAV----AFLGPLMRAAE--RGCMQVVQWFVKRGCR----DMDL  426 (629)
Q Consensus       377 -------------------S~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASe--nGhLEVVKYLIS~GAd----d~~g  426 (629)
                                         +++|++++||+|++.| +++    .|.||||+|+.  +|+.|+|++|++.|++    |..|
T Consensus       273 ~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G  352 (764)
T PHA02716        273 LDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIG  352 (764)
T ss_pred             ccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCC
Confidence                               4567888888888888 443    78899988764  3678899999999986    5578


Q ss_pred             CchhhHhhh--------------cChHHHHHhhhcCC
Q 006847          427 CLALTAATS--------------SSQVEVAAYLLPHV  449 (629)
Q Consensus       427 ~taL~tA~s--------------~gq~eVVkYLLS~v  449 (629)
                      .||||+|+.              .++.+|+++|+++.
T Consensus       353 ~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G  389 (764)
T PHA02716        353 NTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG  389 (764)
T ss_pred             CCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC
Confidence            899988765              36788889888876

>PHA02917 ankyrin-like protein; Provisional

Probab=99.75  E-value=2.4e-18  Score=186.45  Aligned_cols=129  Identities=16%  Similarity=0.158  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHhcCC--C--CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHH--hhhcCccceehhhhccC-
Q 006847          321 VIQGLLGLLVEGGA--D--NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGF--ASHYCKIGTMECLVEEG-  392 (629)
Q Consensus       321 ~iqgLlKsLIEgGa--D--~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~--AS~nGhLEVVKYLIS~G-  392 (629)
                      +.+.+++.|++.+.  +  ..+++++.|+.+|++|+||+||+. |+.+.+|.+|.|||++  |+.+||.||||+||+.| 
T Consensus        83 v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga  162 (661)
T PHA02917         83 VNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGC  162 (661)
T ss_pred             HHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCC
Confidence            34667788887533  2  244677889999999999999988 6799999999999984  46799999999999999 


Q ss_pred             Ccc-------cc-----------chHHHHHHH-----------hCCchHHHHHHHhCcc----ccccCchhhHhhhcChH
Q 006847          393 NAV-------AF-----------LGPLMRAAE-----------RGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQV  439 (629)
Q Consensus       393 d~e-------~G-----------~TPLI~ASe-----------nGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~  439 (629)
                      |++       .|           .||||.|+.           +|+.|||+|||+.||+    +..|+||||.|+..|+.
T Consensus       163 ~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        163 SVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             CccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCC
Confidence            543       24           499999986           5699999999999997    56799999999999995


Q ss_pred             --HHHHhhhcCC
Q 006847          440 --EVAAYLLPHV  449 (629)
Q Consensus       440 --eVVkYLLS~v  449 (629)
                        |||++|+...
T Consensus       243 ~~eivk~Li~g~  254 (661)
T PHA02917        243 DIDIVKLLMKGI  254 (661)
T ss_pred             cHHHHHHHHhCC
Confidence              7999999854

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.73  E-value=7.7e-18  Score=186.22  Aligned_cols=129  Identities=14%  Similarity=0.098  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHhcC-CCC-------cchhHHHHhh--cCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCcc--ceehh
Q 006847          321 VIQGLLGLLVEGG-ADN-------VNQCFLEASR--FGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKI--GTMEC  387 (629)
Q Consensus       321 ~iqgLlKsLIEgG-aD~-------gnTPLL~AS~--~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhL--EVVKY  387 (629)
                      .=..++++||+.| +|.       |+||||.|+.  +|+.|+|++||+. |+.+.+|.+|.||||+|+++|++  ++||+
T Consensus       153 v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVkl  232 (764)
T PHA02716        153 IDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKK  232 (764)
T ss_pred             CCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH
Confidence            3457899999999 662       8999999864  5789999999999 67999999999999999999976  89999


Q ss_pred             hhccC-Ccc----ccchHHHHH-------------------------------------HHhCCchHHHHHHHhCcc---
Q 006847          388 LVEEG-NAV----AFLGPLMRA-------------------------------------AERGCMQVVQWFVKRGCR---  422 (629)
Q Consensus       388 LIS~G-d~e----~G~TPLI~A-------------------------------------SenGhLEVVKYLIS~GAd---  422 (629)
                      ||+.| |++    .|.||||.|                                     +++|++++||+|++.|++   
T Consensus       233 LLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~  312 (764)
T PHA02716        233 IIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHY  312 (764)
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceec
Confidence            99999 555    799999864                                     566889999999999996   


Q ss_pred             -ccccCchhhHhhh--cChHHHHHhhhcCC
Q 006847          423 -DMDLCLALTAATS--SSQVEVAAYLLPHV  449 (629)
Q Consensus       423 -d~~g~taL~tA~s--~gq~eVVkYLLS~v  449 (629)
                       |..|.||||.|+.  +++.|++++|+++.
T Consensus       313 kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G  342 (764)
T PHA02716        313 KDSAGRTCLHQYILRHNISTDIIKLLHEYG  342 (764)
T ss_pred             cCCCCCCHHHHHHHHhCCCchHHHHHHHcC
Confidence             5679999998764  56899999999876

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.73  E-value=4.1e-18  Score=183.85  Aligned_cols=121  Identities=25%  Similarity=0.239  Sum_probs=73.3

Q ss_pred             HHHHHHhcCCCC-------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          325 LLGLLVEGGADN-------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       325 LlKsLIEgGaD~-------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      ++++|||+|||.       +.||||||+++||+-+|.+|++- |+.+.+|..|.||||.|+++||.-+|-||++.| |++
T Consensus        93 v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d  172 (600)
T KOG0509|consen   93 VARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID  172 (600)
T ss_pred             HHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC
Confidence            445666666663       45666666666666666666666 446666666666666666666666666666666 443


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc-----ccccCchhhHhhhcChHHHHHhh
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR-----DMDLCLALTAATSSSQVEVAAYL  445 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd-----d~~g~taL~tA~s~gq~eVVkYL  445 (629)
                          +|.||||+||.+|+-..|..|...|+.     |+.|+||||+|+..|+..+++.|
T Consensus       173 ~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll  231 (600)
T KOG0509|consen  173 LRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLL  231 (600)
T ss_pred             CcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehh
Confidence                566666666666653336666666652     45566666666666666666633

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.72  E-value=1.3e-17  Score=154.96  Aligned_cols=115  Identities=15%  Similarity=0.134  Sum_probs=99.9

Q ss_pred             HHHHHHHHhcCCCC-------cchhHHHHhh---cCCHHHHHHHHHH-hhhhcccCCcchhhHHhhh--cCccceehhhh
Q 006847          323 QGLLGLLVEGGADN-------VNQCFLEASR---FGSTELVRILLQI-AQRNSLDVDVDLALGFASH--YCKIGTMECLV  389 (629)
Q Consensus       323 qgLlKsLIEgGaD~-------gnTPLL~AS~---~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~--nGhLEVVKYLI  389 (629)
                      ..++++|++.|+|.       |.|||++|+.   +|+.|+|++||+. |+.+.+|.+|.||||+|..  ++++++||+||
T Consensus        66 ~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li  145 (209)
T PHA02859         66 VEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLI  145 (209)
T ss_pred             HHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHH
Confidence            36789999999994       7899999865   3579999999998 6799999999999999875  57999999999


Q ss_pred             ccC-Ccc----ccchHHHH-HHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcC
Q 006847          390 EEG-NAV----AFLGPLMR-AAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSS  437 (629)
Q Consensus       390 S~G-d~e----~G~TPLI~-ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~g  437 (629)
                      +.| +++    .|.||||. |+.+|+.++|++|++.|++    +..|.|||+.|....
T Consensus       146 ~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        146 DSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            999 544    79999996 5667899999999999996    567999999998653

>PHA02917 ankyrin-like protein; Provisional

Probab=99.71  E-value=2.5e-17  Score=178.57  Aligned_cols=130  Identities=12%  Similarity=0.077  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHhcCCCC------cchhHHHH---hhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCcccee----
Q 006847          320 TVIQGLLGLLVEGGADN------VNQCFLEA---SRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTM----  385 (629)
Q Consensus       320 ~~iqgLlKsLIEgGaD~------gnTPLL~A---S~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVV----  385 (629)
                      .+++.+ |-|+..|+++      |+||||+|   +.+|+.|+|++||+. |+.++++.+|+|||++|+.+||++|+    
T Consensus        10 ~~~~~~-~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~   88 (661)
T PHA02917         10 VALDEL-KQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIA   88 (661)
T ss_pred             HHHHHH-HHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHH
Confidence            455665 5555566643      89999997   445889999999999 66999999999999999999997765    


Q ss_pred             hhhhccC---CccccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHh--hhcChHHHHHhhhcCCC
Q 006847          386 ECLVEEG---NAVAFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAA--TSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       386 KYLIS~G---d~e~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA--~s~gq~eVVkYLLS~vP  450 (629)
                      +.|++.+   +.+++.+|+++||.+|+.|+||||++.|++    +..|.|||+.|  ...++.||+++|+++.-
T Consensus        89 ~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga  162 (661)
T PHA02917         89 MALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGC  162 (661)
T ss_pred             HHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCC
Confidence            6787764   455667899999999999999999999997    45799999954  56899999999999974

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.69  E-value=2.4e-17  Score=177.93  Aligned_cols=155  Identities=23%  Similarity=0.244  Sum_probs=127.6

Q ss_pred             HHHHHHHhc-CCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhccc-CCcchhhHHhhhcCccceehhhhccC-C
Q 006847          324 GLLGLLVEG-GADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLD-VDVDLALGFASHYCKIGTMECLVEEG-N  393 (629)
Q Consensus       324 gLlKsLIEg-GaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~-~DgdTpLi~AS~nGhLEVVKYLIS~G-d  393 (629)
                      .=+|.|+|+ |.+.      |.|+||||+-|++++|+||||+- |..|+.+ .-+-||||||++|||+.+|++|+..| |
T Consensus        58 ~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAd  137 (600)
T KOG0509|consen   58 ETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGAD  137 (600)
T ss_pred             HHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCC
Confidence            346788888 7764      99999999999999999999999 7788888 44669999999999999999999999 7


Q ss_pred             cc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChh--hh-----hHhH
Q 006847          394 AV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQH--VL-----AALS  458 (629)
Q Consensus       394 ~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~--vl-----~als  458 (629)
                      ++    +|+||||.|++-||.-.|-||++.|++    |++|+|||++|...|....+..|+-.-+-.  .+     |||=
T Consensus       138 pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLH  217 (600)
T KOG0509|consen  138 PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLH  217 (600)
T ss_pred             CceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHH
Confidence            66    899999999999999999999999996    789999999999999988566665544322  22     3343


Q ss_pred             HHHHHHhcccCCCCccceeehhhc-ccC
Q 006847          459 IEILKAAGERSGGSLDGVAFLLHS-DFL  485 (629)
Q Consensus       459 ieilkAA~~rs~gs~~GV~flL~S-nFL  485 (629)
                      ..++       +|-+.+|..++.+ +++
T Consensus       218 wa~~-------~gN~~~v~Ll~~g~~~~  238 (600)
T KOG0509|consen  218 WAVV-------GGNLTAVKLLLEGGADL  238 (600)
T ss_pred             HHHh-------cCCcceEehhhhcCCcc
Confidence            3333       6788888866665 444

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.69  E-value=2.7e-17  Score=164.89  Aligned_cols=111  Identities=15%  Similarity=0.224  Sum_probs=92.5

Q ss_pred             Ccch-hHHHHhhcCCHHHHHHHHHH-hhhhcc----cCCcchhhHHhhhcCccceehhhhccC-Ccc-----ccchHHHH
Q 006847          336 NVNQ-CFLEASRFGSTELVRILLQI-AQRNSL----DVDVDLALGFASHYCKIGTMECLVEEG-NAV-----AFLGPLMR  403 (629)
Q Consensus       336 ~gnT-PLL~AS~~GhLEVVKyLISI-A~knak----~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-----~G~TPLI~  403 (629)
                      .|+| +|+.|+.+|++|+|++||+. |+.+..    +.+|.||||+|+++|+.+++++|++.| |++     .|.||||.
T Consensus        31 ~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~  110 (300)
T PHA02884         31 ICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYI  110 (300)
T ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHH
Confidence            3665 55556666899999999999 567776    468999999999999999999999999 433     48999999


Q ss_pred             HHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhh
Q 006847          404 AAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLL  446 (629)
Q Consensus       404 ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLL  446 (629)
                      |+.+|+.++|++|++.|++    +..|.|||+.|...|+.+++.-+.
T Consensus       111 Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884        111 SVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            9999999999999999996    557899999999988888775543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.69  E-value=1.8e-17  Score=176.08  Aligned_cols=155  Identities=25%  Similarity=0.237  Sum_probs=130.2

Q ss_pred             HHHHHHHh-cCCCC--------------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehh
Q 006847          324 GLLGLLVE-GGADN--------------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMEC  387 (629)
Q Consensus       324 gLlKsLIE-gGaD~--------------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKY  387 (629)
                      +.++||.| +|++.              |-+||-.||.-||+||||.|+.. |+.|.-+....|||--|+.-||+|+|||
T Consensus        56 ~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKy  135 (615)
T KOG0508|consen   56 DVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKY  135 (615)
T ss_pred             HHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHH
Confidence            45688998 88884              77899999999999999999999 5577777778899999999999999999


Q ss_pred             hhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChhh-hhHh
Q 006847          388 LVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQHV-LAAL  457 (629)
Q Consensus       388 LIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~v-l~al  457 (629)
                      |++.| |++    .|.|-||+||.+||-+|+|||.+.|+|    +..|+|+||-+..+|++||++.|+.+--.-. +-..
T Consensus       136 LvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~G  215 (615)
T KOG0508|consen  136 LVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHG  215 (615)
T ss_pred             HHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCC
Confidence            99999 777    899999999999999999999999997    4569999999999999999999999764432 2222


Q ss_pred             HHHHHHHhcccCCCCccceeehhh
Q 006847          458 SIEILKAAGERSGGSLDGVAFLLH  481 (629)
Q Consensus       458 sieilkAA~~rs~gs~~GV~flL~  481 (629)
                      .+-.+-||.   +|-.+-|.+|++
T Consensus       216 mtPL~~Aa~---tG~~~iVe~L~~  236 (615)
T KOG0508|consen  216 MTPLLLAAV---TGHTDIVERLLQ  236 (615)
T ss_pred             CchHHHHhh---hcchHHHHHHhc
Confidence            222233333   567778888887

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.68  E-value=1e-16  Score=169.81  Aligned_cols=126  Identities=22%  Similarity=0.251  Sum_probs=104.9

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .++++|++.|+|.      |+||||+|+++|++|+|++|++. |+.+..+.+|.|||++|...|+.+++|+|++.+ +..
T Consensus       159 ~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~  238 (682)
T PHA02876        159 LIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNIN  238 (682)
T ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence            4778999999995      99999999999999999999999 568889999999999999999999999888766 221


Q ss_pred             ---------------------------------ccchHHHHHHHhCCc-hHHHHHHHhCcc----ccccCchhhHhhhcC
Q 006847          396 ---------------------------------AFLGPLMRAAERGCM-QVVQWFVKRGCR----DMDLCLALTAATSSS  437 (629)
Q Consensus       396 ---------------------------------~G~TPLI~ASenGhL-EVVKYLIS~GAd----d~~g~taL~tA~s~g  437 (629)
                                                       .|.||||.|++.|++ ++|++|++.|++    +..|.||||.|+..|
T Consensus       239 ~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g  318 (682)
T PHA02876        239 KNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNG  318 (682)
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhC
Confidence                                             477888888888775 578888888875    456788888888877


Q ss_pred             -hHHHHHhhhcCC
Q 006847          438 -QVEVAAYLLPHV  449 (629)
Q Consensus       438 -q~eVVkYLLS~v  449 (629)
                       ..+++++|+...
T Consensus       319 ~~~~~v~~Ll~~g  331 (682)
T PHA02876        319 YDTENIRTLIMLG  331 (682)
T ss_pred             CCHHHHHHHHHcC
Confidence             477888887765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.68  E-value=6.9e-17  Score=145.12  Aligned_cols=105  Identities=14%  Similarity=0.092  Sum_probs=91.7

Q ss_pred             HHHHHHHHHhcCCCC------cchhHHHHhhcCCHHH---HHHHHHH-hhhhccc-CCcchhhHHhhhcCccceehhhhc
Q 006847          322 IQGLLGLLVEGGADN------VNQCFLEASRFGSTEL---VRILLQI-AQRNSLD-VDVDLALGFASHYCKIGTMECLVE  390 (629)
Q Consensus       322 iqgLlKsLIEgGaD~------gnTPLL~AS~~GhLEV---VKyLISI-A~knak~-~DgdTpLi~AS~nGhLEVVKYLIS  390 (629)
                      +..+++.|++.|++.      |.||||+|+.+|+.|.   |++|++. |..+.++ .+|+||||+|+.+|+.+++++|++
T Consensus        36 l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~  115 (166)
T PHA02743         36 LMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCR  115 (166)
T ss_pred             HHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            456788899988763      9999999999999765   8999998 5688888 589999999999999999999995


Q ss_pred             -cC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcccccc
Q 006847          391 -EG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCRDMDL  426 (629)
Q Consensus       391 -~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAdd~~g  426 (629)
                       .| +++    .|.||||+|+.+|+.++|++|++.|++.+..
T Consensus       116 ~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~  157 (166)
T PHA02743        116 QLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDP  157 (166)
T ss_pred             ccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence             67 444    7999999999999999999999999986543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.68  E-value=8.5e-17  Score=169.01  Aligned_cols=125  Identities=12%  Similarity=0.061  Sum_probs=110.9

Q ss_pred             HHHHHHHhcCCCC------------cchhHHHHhh--cCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhh
Q 006847          324 GLLGLLVEGGADN------------VNQCFLEASR--FGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECL  388 (629)
Q Consensus       324 gLlKsLIEgGaD~------------gnTPLL~AS~--~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYL  388 (629)
                      -.++.||+.|++.            ++|+||+|..  +|+.|+|++||+. |+.+.  .++.|||++|+.+|+.++|++|
T Consensus        91 ~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~--~~~~t~lh~A~~~~~~eIVk~L  168 (437)
T PHA02795         91 DIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK--IECLNAYFRGICKKESSVVEFI  168 (437)
T ss_pred             HHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC--CCCCCHHHHHHHcCcHHHHHHH
Confidence            3677899999983            6899999999  9999999999999 55665  3568999999999999999999


Q ss_pred             hccC-Ccc----------ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          389 VEEG-NAV----------AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       389 IS~G-d~e----------~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      ++.| +.+          .++||++.|+++|++|||++|++.||+    +..|.|||+.|+..++.++++||+++..
T Consensus       169 ls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA  245 (437)
T PHA02795        169 LNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGA  245 (437)
T ss_pred             HhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            9999 222          278899999999999999999999997    5579999999999999999999999873

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.67  E-value=1.9e-16  Score=124.31  Aligned_cols=112  Identities=28%  Similarity=0.334  Sum_probs=102.2

Q ss_pred             CCcchhHHHHhhcCCHHHHHHHHHHhh-hhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhC
Q 006847          335 DNVNQCFLEASRFGSTELVRILLQIAQ-RNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERG  408 (629)
Q Consensus       335 D~gnTPLL~AS~~GhLEVVKyLISIA~-knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenG  408 (629)
                      +.|+|||++|+.+|+.++|++|+.... .+..+.+|+|||++|...+..+++++|++.| +.+    .|.||+|.|.+.+
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~   84 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG   84 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            459999999999999999999999855 4788999999999999999999999999999 322    7899999999999


Q ss_pred             CchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhh
Q 006847          409 CMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLL  446 (629)
Q Consensus       409 hLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLL  446 (629)
                      +.++++||++.|.+    +..++||++.|...++.+++++|+
T Consensus        85 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          85 NLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999853    567899999999999999999985

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.67  E-value=1e-16  Score=127.17  Aligned_cols=81  Identities=22%  Similarity=0.350  Sum_probs=68.8

Q ss_pred             HHHHhhcCCHHHHHHHHHHhhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHH
Q 006847          341 FLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQW  415 (629)
Q Consensus       341 LL~AS~~GhLEVVKyLISIA~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKY  415 (629)
                      |++|+++|++|+|++|++...  ..+. |+|||++|+.+|+++++|+|++.| +++    +|+||||.|+++|+.|+|||
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~--~~~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~   77 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGA--DINL-GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKL   77 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTS--TTTS-SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcC--CCCC-CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            789999999999999999522  1222 889999999999999999999999 444    78999999999999999999


Q ss_pred             HHHhCcccc
Q 006847          416 FVKRGCRDM  424 (629)
Q Consensus       416 LIS~GAdd~  424 (629)
                      |++.|++-+
T Consensus        78 Ll~~g~~~~   86 (89)
T PF12796_consen   78 LLEHGADVN   86 (89)
T ss_dssp             HHHTTT-TT
T ss_pred             HHHcCCCCC
Confidence            999999744

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02730 ankyrin-like protein; Provisional

Probab=99.66  E-value=1.9e-16  Score=173.44  Aligned_cols=130  Identities=14%  Similarity=0.135  Sum_probs=110.6

Q ss_pred             HHHHHHHHhcCCCC-----cchhHHHHhhcCC----HHHHHHHHHH-h--hhhcccCCcchhhH---HhhhcC-------
Q 006847          323 QGLLGLLVEGGADN-----VNQCFLEASRFGS----TELVRILLQI-A--QRNSLDVDVDLALG---FASHYC-------  380 (629)
Q Consensus       323 qgLlKsLIEgGaD~-----gnTPLL~AS~~Gh----LEVVKyLISI-A--~knak~~DgdTpLi---~AS~nG-------  380 (629)
                      ..+++.||+.|||.     |+||||+|+.++.    .|+|++||+. |  +.+.+|.+|.|||+   .|..++       
T Consensus       359 ieIvelLIs~GAdIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e  438 (672)
T PHA02730        359 IPILRCMLDNGATMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYE  438 (672)
T ss_pred             HHHHHHHHHCCCCCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccc
Confidence            35667899999984     9999999999885    8999999999 3  48999999999998   355443       


Q ss_pred             --ccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----cc-ccCchhhHhhhc--ChHHHHHhhh
Q 006847          381 --KIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DM-DLCLALTAATSS--SQVEVAAYLL  446 (629)
Q Consensus       381 --hLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~-~g~taL~tA~s~--gq~eVVkYLL  446 (629)
                        .++++++||+.| |++    .|.||||+|+..|+.++|++|++.||+    +. .|.|||+.|...  ++.+++++|+
T Consensus       439 ~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LL  518 (672)
T PHA02730        439 TILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLL  518 (672)
T ss_pred             hhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHH
Confidence              245799999999 555    799999999999999999999999996    32 489999999874  7899999999


Q ss_pred             cCCChh
Q 006847          447 PHVPQH  452 (629)
Q Consensus       447 S~vPq~  452 (629)
                      ++-|.-
T Consensus       519 s~ga~i  524 (672)
T PHA02730        519 SYHPTL  524 (672)
T ss_pred             HcCCCH
Confidence            999854

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.64  E-value=5e-16  Score=170.06  Aligned_cols=144  Identities=14%  Similarity=0.048  Sum_probs=119.8

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCc
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCM  410 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhL  410 (629)
                      +.++|+.|+.+|+.++|+.||+. ++.|..|.+|.||||+|+.+||.++|++|++.| |++    +|+||||.|+.+||.
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~  604 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHH  604 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence            56899999999999999999999 669999999999999999999999999999999 554    799999999999999


Q ss_pred             hHHHHHHHhCcc--ccccCchhhHhhhcChHHHHHhhhcCCChh--hhhHhHHHHHHHhcccCCCCccceeehhhcc
Q 006847          411 QVVQWFVKRGCR--DMDLCLALTAATSSSQVEVAAYLLPHVPQH--VLAALSIEILKAAGERSGGSLDGVAFLLHSD  483 (629)
Q Consensus       411 EVVKYLIS~GAd--d~~g~taL~tA~s~gq~eVVkYLLS~vPq~--vl~alsieilkAA~~rs~gs~~GV~flL~Sn  483 (629)
                      ++|++|++.|+.  ...+.++|+.|+..++.+++++|+.+...+  .+....+-+--|+.   .|..+-|.+||...
T Consensus       605 ~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~---~g~~~iv~~Ll~~G  678 (823)
T PLN03192        605 KIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA---EDHVDMVRLLIMNG  678 (823)
T ss_pred             HHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH---CCcHHHHHHHHHcC
Confidence            999999999885  446789999999999999999999886432  23333333333444   35666677777543

>PHA02730 ankyrin-like protein; Provisional

Probab=99.64  E-value=4e-16  Score=170.91  Aligned_cols=128  Identities=17%  Similarity=0.090  Sum_probs=106.8

Q ss_pred             HHHHHHHhc--CCC-----CcchhHHHHhhcC---CHHHHHHHHHH-hhhhcccCCcchhhHHhhhcC--ccceehhhhc
Q 006847          324 GLLGLLVEG--GAD-----NVNQCFLEASRFG---STELVRILLQI-AQRNSLDVDVDLALGFASHYC--KIGTMECLVE  390 (629)
Q Consensus       324 gLlKsLIEg--GaD-----~gnTPLL~AS~~G---hLEVVKyLISI-A~knak~~DgdTpLi~AS~nG--hLEVVKYLIS  390 (629)
                      .++|..|+.  |.+     .|+||||+|+.+|   +.|+|++||+. |+.+++|.+|+||||+|+.++  +.|||++||+
T Consensus        21 ~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~  100 (672)
T PHA02730         21 KKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLIS  100 (672)
T ss_pred             HHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHh
Confidence            567778883  333     2999999999997   59999999999 669999999999999999966  8999999999


Q ss_pred             cC-Cc--c----ccchHHHHHHH--hCCchHHHHHHH-hCcc----cc-----ccCchhhHhhhcChHHHHHhhhcCCCh
Q 006847          391 EG-NA--V----AFLGPLMRAAE--RGCMQVVQWFVK-RGCR----DM-----DLCLALTAATSSSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       391 ~G-d~--e----~G~TPLI~ASe--nGhLEVVKYLIS-~GAd----d~-----~g~taL~tA~s~gq~eVVkYLLS~vPq  451 (629)
                      .| ++  +    .+.|||+.+..  +|++|+|||||+ .|++    ++     .+.+|+..|...++.|||++|+.+.+-
T Consensus       101 ~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~  180 (672)
T PHA02730        101 SYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECY  180 (672)
T ss_pred             cCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCc
Confidence            98 44  2    36777776666  899999999997 4444    11     578999999999999999999988754

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.60  E-value=1.6e-15  Score=120.47  Aligned_cols=79  Identities=25%  Similarity=0.345  Sum_probs=73.0

Q ss_pred             hHHhhhcCccceehhhhccC-CccccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhc
Q 006847          373 LGFASHYCKIGTMECLVEEG-NAVAFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLP  447 (629)
Q Consensus       373 Li~AS~nGhLEVVKYLIS~G-d~e~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS  447 (629)
                      |++|+++|+++++++|++.| +.+.|.||||+|+.+|++|+||||++.|++    +.+|.|||+.|+.+++.|+++||++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~   80 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINLGNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLE   80 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTSSSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            79999999999999999999 666689999999999999999999999997    4579999999999999999999999


Q ss_pred             CCCh
Q 006847          448 HVPQ  451 (629)
Q Consensus       448 ~vPq  451 (629)
                      +-+.
T Consensus        81 ~g~~   84 (89)
T PF12796_consen   81 HGAD   84 (89)
T ss_dssp             TTT-
T ss_pred             cCCC
Confidence            8654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.59  E-value=1.1e-15  Score=174.55  Aligned_cols=122  Identities=27%  Similarity=0.296  Sum_probs=104.9

Q ss_pred             HHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH----------------------------------hhhhcccC
Q 006847          328 LLVEGGADN------VNQCFLEASRFGSTELVRILLQI----------------------------------AQRNSLDV  367 (629)
Q Consensus       328 sLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI----------------------------------A~knak~~  367 (629)
                      .+...|+|.      |.|||+.|.+.||.|+|+.|+.-                                  ++.+.++.
T Consensus       459 ~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~  538 (1143)
T KOG4177|consen  459 LLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTG  538 (1143)
T ss_pred             hHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcc
Confidence            455677773      77888888888888888777762                                  33445778


Q ss_pred             CcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcCh
Q 006847          368 DVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQ  438 (629)
Q Consensus       368 DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq  438 (629)
                      +|+||||+|+++||+.+||||++.| |.+    .|+||||+|+..||-+|+.+|+++||+    +.+|.|||+.|...|+
T Consensus       539 r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~  618 (1143)
T KOG4177|consen  539 RGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGY  618 (1143)
T ss_pred             cccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcc
Confidence            8899999999999999999999999 443    899999999999999999999999996    6789999999999999


Q ss_pred             HHHHHhhhcCC
Q 006847          439 VEVAAYLLPHV  449 (629)
Q Consensus       439 ~eVVkYLLS~v  449 (629)
                      ++++++|+-+-
T Consensus       619 ~~~~k~l~~~~  629 (1143)
T KOG4177|consen  619 LSVVKLLKVVT  629 (1143)
T ss_pred             cchhhHHHhcc
Confidence            99999998765

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.59  E-value=4.4e-15  Score=125.75  Aligned_cols=113  Identities=26%  Similarity=0.277  Sum_probs=106.3

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCc-----cceehhhhccCC---cc-----ccchHHH
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCK-----IGTMECLVEEGN---AV-----AFLGPLM  402 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGh-----LEVVKYLIS~Gd---~e-----~G~TPLI  402 (629)
                      +.+|+++|+.+|..+++++|+.. +..+.++.+|+|||++|+.+|+     .+++++|++.|.   ..     .|+||||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~  152 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH  152 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhH
Confidence            78999999999999999999998 5578899999999999999999     999999999996   22     8999999


Q ss_pred             HHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          403 RAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       403 ~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +|+..|+.++|++|++.|++    +..|.|+++.|+..++.+++++|+...
T Consensus       153 ~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999996    578999999999999999999999986

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.58  E-value=1.1e-15  Score=133.27  Aligned_cols=88  Identities=23%  Similarity=0.244  Sum_probs=79.7

Q ss_pred             CcchhHHHHhhcCCH---HHHHHHHHH-hhhhccc-CCcchhhHHhhhcCccceehhhhcc-C-Ccc----ccchHHHHH
Q 006847          336 NVNQCFLEASRFGST---ELVRILLQI-AQRNSLD-VDVDLALGFASHYCKIGTMECLVEE-G-NAV----AFLGPLMRA  404 (629)
Q Consensus       336 ~gnTPLL~AS~~GhL---EVVKyLISI-A~knak~-~DgdTpLi~AS~nGhLEVVKYLIS~-G-d~e----~G~TPLI~A  404 (629)
                      .|.||||+|+.+|++   |+|++|++. ++.+.++ .+|+||||+|+++|+.+++++|++. | +++    .|.|||++|
T Consensus        54 ~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A  133 (154)
T PHA02736         54 HGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA  133 (154)
T ss_pred             CCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHH
Confidence            499999999999998   578999998 6688888 5999999999999999999999985 6 544    799999999


Q ss_pred             HHhCCchHHHHHHHhCccc
Q 006847          405 AERGCMQVVQWFVKRGCRD  423 (629)
Q Consensus       405 SenGhLEVVKYLIS~GAdd  423 (629)
                      +..|+.++|++|++.|++.
T Consensus       134 ~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        134 CERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             HHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999974

>PHA02741 hypothetical protein; Provisional

Probab=99.58  E-value=3.3e-15  Score=133.73  Aligned_cols=86  Identities=20%  Similarity=0.210  Sum_probs=78.6

Q ss_pred             cchhHHHHhhcCC----HHHHHHHHHH-hhhhcccC-CcchhhHHhhhcCccceehhhhc-cC-Ccc----ccchHHHHH
Q 006847          337 VNQCFLEASRFGS----TELVRILLQI-AQRNSLDV-DVDLALGFASHYCKIGTMECLVE-EG-NAV----AFLGPLMRA  404 (629)
Q Consensus       337 gnTPLL~AS~~Gh----LEVVKyLISI-A~knak~~-DgdTpLi~AS~nGhLEVVKYLIS-~G-d~e----~G~TPLI~A  404 (629)
                      |+|||++|+.+|+    .|++++||+. |+.+.++. +|+||||+|+.+++.+++++|++ .| +++    .|.|||+.|
T Consensus        60 g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A  139 (169)
T PHA02741         60 GQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELA  139 (169)
T ss_pred             CCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHH
Confidence            9999999999999    5999999998 66888885 89999999999999999999998 47 444    799999999


Q ss_pred             HHhCCchHHHHHHHhCcc
Q 006847          405 AERGCMQVVQWFVKRGCR  422 (629)
Q Consensus       405 SenGhLEVVKYLIS~GAd  422 (629)
                      ..+|+.++|++|++.++.
T Consensus       140 ~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741        140 IDNEDVAMMQILREIVAT  157 (169)
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            999999999999999875

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.57  E-value=3.7e-15  Score=165.17  Aligned_cols=125  Identities=30%  Similarity=0.291  Sum_probs=110.6

Q ss_pred             HHHHHhcCCCCcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhc-cC----C--cccc
Q 006847          326 LGLLVEGGADNVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVE-EG----N--AVAF  397 (629)
Q Consensus       326 lKsLIEgGaD~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS-~G----d--~e~G  397 (629)
                      .|-|+.-.=+.|+||||+|++.|+.|-|.-||+- |++++++.|+.||||+|+.||.+.+|+-|.. .|    +  ...|
T Consensus       262 ~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g  341 (929)
T KOG0510|consen  262 EKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHG  341 (929)
T ss_pred             HHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccC
Confidence            4445543323399999999999999999999999 7799999999999999999999999999999 66    1  1289


Q ss_pred             chHHHHHHHhCCchHHHHHHHhCccc-------cccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          398 LGPLMRAAERGCMQVVQWFVKRGCRD-------MDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       398 ~TPLI~ASenGhLEVVKYLIS~GAdd-------~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      .||||.|+.+||-.|||.|+..||.+       ..|.||||+|+-.|+..+|+||++|.-
T Consensus       342 ~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga  401 (929)
T KOG0510|consen  342 MTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGA  401 (929)
T ss_pred             CCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCC
Confidence            99999999999999999999999964       459999999999999999999999864

>PHA02792 ankyrin-like protein; Provisional

Probab=99.56  E-value=5.5e-15  Score=161.20  Aligned_cols=152  Identities=15%  Similarity=0.159  Sum_probs=120.1

Q ss_pred             ccchhhhhcccCCCCccc-cc---h--HHHHHHHHH--HHHhcCCC------CcchhHH-HHhhcCCHHHHHHHHHH-hh
Q 006847          298 ACFPLTLFSSSFDPGWAS-GI---S--ATVIQGLLG--LLVEGGAD------NVNQCFL-EASRFGSTELVRILLQI-AQ  361 (629)
Q Consensus       298 aCfpltlfs~~~~pgwas-G~---s--a~~iqgLlK--sLIEgGaD------~gnTPLL-~AS~~GhLEVVKyLISI-A~  361 (629)
                      ||-+..|+++--+|=.-+ |.   -  -+-....+|  .++.-|-+      ++.+||+ .||.+|++|+||+||+. |+
T Consensus        18 ~~~~~~l~~~g~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAd   97 (631)
T PHA02792         18 ACSAQSLIESGANPLYEYDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLE   97 (631)
T ss_pred             HHHHHHHHHcCCCcccccCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCC
Confidence            678888888877773321 11   0  112222333  33333332      2778885 58999999999999999 77


Q ss_pred             hhcccCCcchhhHHh-hhcCccceehhhhccC-Ccc----------------------------------------ccch
Q 006847          362 RNSLDVDVDLALGFA-SHYCKIGTMECLVEEG-NAV----------------------------------------AFLG  399 (629)
Q Consensus       362 knak~~DgdTpLi~A-S~nGhLEVVKYLIS~G-d~e----------------------------------------~G~T  399 (629)
                      .|.++.+++|||+|| +.++|+||||+||+.| |++                                        .|.|
T Consensus        98 vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t  177 (631)
T PHA02792         98 INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKT  177 (631)
T ss_pred             cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCc
Confidence            999999999999999 5589999999999999 521                                        3889


Q ss_pred             HHHHHHHhC-------CchHHHHHHHhCcc----ccccCchhhHhhhcC--hHHHHHhhhcCC
Q 006847          400 PLMRAAERG-------CMQVVQWFVKRGCR----DMDLCLALTAATSSS--QVEVAAYLLPHV  449 (629)
Q Consensus       400 PLI~ASenG-------hLEVVKYLIS~GAd----d~~g~taL~tA~s~g--q~eVVkYLLS~v  449 (629)
                      |||+|..++       +.||+|+||++|++    |..|+|||+.|..++  ..|+++.|+.-.
T Consensus       178 ~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~  240 (631)
T PHA02792        178 VLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSN  240 (631)
T ss_pred             hHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhcc
Confidence            999999999       89999999999996    678999999999999  899999998864

>PHA02792 ankyrin-like protein; Provisional

Probab=99.52  E-value=2.8e-14  Score=155.70  Aligned_cols=267  Identities=12%  Similarity=0.071  Sum_probs=173.6

Q ss_pred             hHH-HHHhhhhc-------chhHHhhhhhc-cCccCcchhhhhcccceecccch-hhhhHHHHHHHHHHHcCchhHHHHH
Q 006847          115 GKM-FQSAMSSH-------DWELAESLILL-ADPHTLNDALCITLDSIWFLRTQ-QELHGVTGLIKKIIANGAYDFTRAA  184 (629)
Q Consensus       115 g~~-fq~av~~~-------~w~~ae~~i~~-AD~q~lnd~Lci~ld~iWflst~-~el~~~~~lI~kiv~~GA~dftRA~  184 (629)
                      |+. +--||-+|       .||.++-||.- |++...+..=|.+|---|--++. .|       |-++.-.++++|    
T Consensus       175 g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~e-------i~~~L~~~~~~~----  243 (631)
T PHA02792        175 GKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKRE-------IFDALFDSNYSG----  243 (631)
T ss_pred             CCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHH-------HHHHHHhccccc----
Confidence            444 67788888       89999999975 67766665444444333333421 11       222222246655    


Q ss_pred             HhhhhhhhhhhhhhccccccchhHHHHHHHHHHHhhhcCCcchhhhhhhhhhhHhHHHHHHhhccccccCCCCCCCCcch
Q 006847          185 LRTSFLASCVSACQSRTMSLQDTVTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWALRCIGFHSRCNDNCDAVSHSS  264 (629)
Q Consensus       185 lrtsflaSCvsac~srt~sl~d~v~vmaqrlherlqe~ngde~lkaea~akvqkftewalkcig~hsr~~~~~~~~~~~s  264 (629)
                                          .+++-+|+.-|+-|.+.-|++..+  .   .|-||.|-    ++.|.--   +.-++-..
T Consensus       244 --------------------~~~~~~l~~y~~~~~~~~~~~id~--~---iv~~ll~~----~~~~~i~---~~~~~~~~  291 (631)
T PHA02792        244 --------------------NELMNILSNYLRKQYRNKNHKIDN--Y---IVDKLLSG----HDTFYIL---ELCNSLRN  291 (631)
T ss_pred             --------------------cchHhHHHHHHHHHhccCccCccH--H---HHHHHHhC----CCccchh---hhhhhhhh
Confidence                                357899999999998865544332  2   56666542    1111000   00000000


Q ss_pred             HHHHHHHHHHHHHHHhhhCCCCCccchHHHHhhccchhhhhcccCCCCccccchHHHHHHHHHHHHhcCCCC----cchh
Q 006847          265 AVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGLLVEGGADN----VNQC  340 (629)
Q Consensus       265 ~~e~qlqlsafk~fldlagn~Ltgk~fteafdaaCfpltlfs~~~~pgwasG~sa~~iqgLlKsLIEgGaD~----gnTP  340 (629)
                      .   .--.+.+||+=+          --.++      |....       .+|   .+=...+|+||+.|++.    ..++
T Consensus       292 ~---~~~~~~~~~~~~----------~~q~~------l~~Yl-------~~~---~v~ieiIK~LId~Ga~~~r~~~~n~  342 (631)
T PHA02792        292 N---IIISSILKRYTD----------SIQDL------LSEYV-------SYH---TVYINVIKCMIDEGATLYRFKHINK  342 (631)
T ss_pred             h---hHHHHHHHHHhH----------HHHHH------HHHHH-------hcC---CccHHHHHHHHHCCCccccCCcchH
Confidence            0   011233344322          00000      11111       111   13345678999999986    4568


Q ss_pred             HHHHhhcCCHHHHHHHHHH-hhhhcccCCc--chhhHHhhhcCccc---eehhhhccC-Ccc----ccchHHHHHHHhCC
Q 006847          341 FLEASRFGSTELVRILLQI-AQRNSLDVDV--DLALGFASHYCKIG---TMECLVEEG-NAV----AFLGPLMRAAERGC  409 (629)
Q Consensus       341 LL~AS~~GhLEVVKyLISI-A~knak~~Dg--dTpLi~AS~nGhLE---VVKYLIS~G-d~e----~G~TPLI~ASenGh  409 (629)
                      ++.|+.+|..|+|++||+. |+.+.+|.+|  .|||++|..+...+   ++|+|++.| |++    .|.||||.|+.+|+
T Consensus       343 ~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n  422 (631)
T PHA02792        343 YFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHS  422 (631)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCC
Confidence            9999999999999999999 6688888886  59999987776654   589999999 555    69999999999999


Q ss_pred             chHHHHHHHhCcc----ccccCchhhHhhh---cC-------hHHHHHhhhcCCChhh
Q 006847          410 MQVVQWFVKRGCR----DMDLCLALTAATS---SS-------QVEVAAYLLPHVPQHV  453 (629)
Q Consensus       410 LEVVKYLIS~GAd----d~~g~taL~tA~s---~g-------q~eVVkYLLS~vPq~v  453 (629)
                      .++|++|++.|++    +..|.|||+.|..   .+       ..++++.|+++.|..-
T Consensus       423 ~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        423 VSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            9999999999997    5679999999976   22       3567888899888754

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.50  E-value=3e-14  Score=153.18  Aligned_cols=111  Identities=14%  Similarity=0.029  Sum_probs=96.9

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhccc--------------CCcchhhHHhhhcCccceehhhhccC-Ccc----c
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLD--------------VDVDLALGFASHYCKIGTMECLVEEG-NAV----A  396 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~--------------~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~  396 (629)
                      |.||||.|+.+|+.|+||+||+. |+.+..+              ..|.|||++|+..|+.+++++|++.| |++    .
T Consensus       128 G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~  207 (743)
T TIGR00870       128 GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSL  207 (743)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhh
Confidence            89999999999999999999998 4455432              35889999999999999999999999 555    7


Q ss_pred             cchHHHHHHHhC---------CchHHHHHHHhCcc-----------ccccCchhhHhhhcChHHHHHhhhc
Q 006847          397 FLGPLMRAAERG---------CMQVVQWFVKRGCR-----------DMDLCLALTAATSSSQVEVAAYLLP  447 (629)
Q Consensus       397 G~TPLI~ASenG---------hLEVVKYLIS~GAd-----------d~~g~taL~tA~s~gq~eVVkYLLS  447 (629)
                      |+||||.|+.++         ..++++++++.|++           +..|.|||+.|+..|+.+++++|+.
T Consensus       208 g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       208 GNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence            999999999997         34567788887775           4579999999999999999999998

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.49  E-value=5.6e-14  Score=141.17  Aligned_cols=124  Identities=12%  Similarity=0.083  Sum_probs=105.7

Q ss_pred             HHHHHHHHhcCCCC----------cchhHHHHhhcCCHHHHHHHHHH-hhhhcc-cCCcchhhHHhhhcCccceehhhhc
Q 006847          323 QGLLGLLVEGGADN----------VNQCFLEASRFGSTELVRILLQI-AQRNSL-DVDVDLALGFASHYCKIGTMECLVE  390 (629)
Q Consensus       323 qgLlKsLIEgGaD~----------gnTPLL~AS~~GhLEVVKyLISI-A~knak-~~DgdTpLi~AS~nGhLEVVKYLIS  390 (629)
                      ..++++|++.|||.          |.||||+|+++|+.|+|++|++. |+.+.+ +..|.|||++|+.+|+.+++++|++
T Consensus        46 ~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~  125 (300)
T PHA02884         46 TDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLS  125 (300)
T ss_pred             HHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            47899999999983          77999999999999999999999 668876 4579999999999999999999999


Q ss_pred             cC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCccccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          391 EG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       391 ~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAdd~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      .| |++    .|.|||+.|+++++.+++..+..++ .+.-+.+|.+.+   ++.|++++|+||+.
T Consensus       126 ~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        126 YGADINIQTNDMVTPIELALMICNNFLAFMICDNE-ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc-ccccccChhhhh---ccHHHHHHHHHHHH
Confidence            99 554    7999999999999999886555444 234466788764   47899999999986

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.49  E-value=2.1e-14  Score=142.86  Aligned_cols=130  Identities=19%  Similarity=0.129  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHHh------cCCCC-cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhh
Q 006847          318 SATVIQGLLGLLVE------GGADN-VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLV  389 (629)
Q Consensus       318 sa~~iqgLlKsLIE------gGaD~-gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLI  389 (629)
                      |=++-|.-++.-++      +-||. |+||||||+++||+++|+.|+.. |..+.+++.-.++|..|+..|+.+|||.|.
T Consensus       134 slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL  213 (296)
T KOG0502|consen  134 SLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLL  213 (296)
T ss_pred             hHHHHHHHHHHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHH
Confidence            34455666664444      34554 99999999999999999999999 669999999999999999999999999999


Q ss_pred             ccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhc
Q 006847          390 EEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLP  447 (629)
Q Consensus       390 S~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS  447 (629)
                      ..+ |++    +|-|||-+|.+-||-..|+-|+..||+    ++-|+++++.|...|.--|..-+-+
T Consensus       214 ~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr~Vqqvie~  280 (296)
T KOG0502|consen  214 TREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYRIVQQVIEK  280 (296)
T ss_pred             hcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhHHHHHHHHH
Confidence            999 777    899999999999999999999999998    6779999999999998755444333

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.48  E-value=4e-14  Score=137.27  Aligned_cols=107  Identities=22%  Similarity=0.172  Sum_probs=95.4

Q ss_pred             hHHHHhhcCCHHHHHHHHHH-hh-hhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchH
Q 006847          340 CFLEASRFGSTELVRILLQI-AQ-RNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQV  412 (629)
Q Consensus       340 PLL~AS~~GhLEVVKyLISI-A~-knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEV  412 (629)
                      -+++|+..|.++.||.||+- |+ .|.+|.|++||||-|++|||+++|+-|+--| |++    .|||||+-||.=+..+|
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            47899999999999999999 66 8999999999999999999999999999999 665    89999999999999999


Q ss_pred             HHHHHHhCccc----cccCchhhHhhhcCh-HHHHHhhh
Q 006847          413 VQWFVKRGCRD----MDLCLALTAATSSSQ-VEVAAYLL  446 (629)
Q Consensus       413 VKYLIS~GAdd----~~g~taL~tA~s~gq-~eVVkYLL  446 (629)
                      +-.|.+.|+|-    +-..||||+|+.+.. .+.+.||+
T Consensus       146 a~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll  184 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLL  184 (228)
T ss_pred             HHHHHhccCcccccccccchhhHHhhcccchHHHHHHHh
Confidence            99999999984    457899999998776 44555554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.48  E-value=1e-13  Score=149.13  Aligned_cols=110  Identities=19%  Similarity=0.106  Sum_probs=52.6

Q ss_pred             cchhHH-HHhhcCCHHHHHHHHHHhhhhcccCCcchhhHHhhhc---CccceehhhhccCCc---------------ccc
Q 006847          337 VNQCFL-EASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHY---CKIGTMECLVEEGNA---------------VAF  397 (629)
Q Consensus       337 gnTPLL-~AS~~GhLEVVKyLISIA~knak~~DgdTpLi~AS~n---GhLEVVKYLIS~Gd~---------------e~G  397 (629)
                      |.|||+ .|+++|+.|+|+.|++..+   .+..|+||||+|+.+   +.-++++++...+..               ..|
T Consensus        52 G~t~Lh~~A~~~~~~eiv~lLl~~g~---~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G  128 (743)
T TIGR00870        52 GRSALFVAAIENENLELTELLLNLSC---RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPG  128 (743)
T ss_pred             chhHHHHHHHhcChHHHHHHHHhCCC---CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCC
Confidence            555555 5555555555555555433   444555555555541   122223333322200               135


Q ss_pred             chHHHHHHHhCCchHHHHHHHhCcccc------------------ccCchhhHhhhcChHHHHHhhhcCC
Q 006847          398 LGPLMRAAERGCMQVVQWFVKRGCRDM------------------DLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       398 ~TPLI~ASenGhLEVVKYLIS~GAdd~------------------~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      .||||.|+.+|++|+||+|++.||+-+                  .|.|||+.|...++.+++++|+.+-
T Consensus       129 ~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g  198 (743)
T TIGR00870       129 ITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP  198 (743)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC
Confidence            555555555555555555555555411                  2445555555555555555555443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.40  E-value=5.7e-13  Score=112.94  Aligned_cols=94  Identities=27%  Similarity=0.342  Sum_probs=86.7

Q ss_pred             HHHHhcCCCC------cchhHHHHhhcCC-----HHHHHHHHHHhh----hhcccCCcchhhHHhhhcCccceehhhhcc
Q 006847          327 GLLVEGGADN------VNQCFLEASRFGS-----TELVRILLQIAQ----RNSLDVDVDLALGFASHYCKIGTMECLVEE  391 (629)
Q Consensus       327 KsLIEgGaD~------gnTPLL~AS~~Gh-----LEVVKyLISIA~----knak~~DgdTpLi~AS~nGhLEVVKYLIS~  391 (629)
                      ++|++.|+|.      |.|||+.|+.+|+     .|+|++||....    .+..|.+|+|||+||+.+|+.++|++|++.
T Consensus        90 ~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~  169 (235)
T COG0666          90 KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA  169 (235)
T ss_pred             HHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhc
Confidence            8899999995      9999999999999     999999999944    444699999999999999999999999999


Q ss_pred             C-Ccc----ccchHHHHHHHhCCchHHHHHHHhC
Q 006847          392 G-NAV----AFLGPLMRAAERGCMQVVQWFVKRG  420 (629)
Q Consensus       392 G-d~e----~G~TPLI~ASenGhLEVVKYLIS~G  420 (629)
                      | +.+    .|.|||+.|+.+|+.+++++++..|
T Consensus       170 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         170 GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9 433    8999999999999999999999987

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.40  E-value=2.6e-13  Score=141.57  Aligned_cols=126  Identities=22%  Similarity=0.191  Sum_probs=104.8

Q ss_pred             HHHHHHHhcCCCCcchhHHHHhhcCCHHHHHHHHHH--hhhhcccCCcchhhHHhhh-----cCccceehhhhccCCcc-
Q 006847          324 GLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQI--AQRNSLDVDVDLALGFASH-----YCKIGTMECLVEEGNAV-  395 (629)
Q Consensus       324 gLlKsLIEgGaD~gnTPLL~AS~~GhLEVVKyLISI--A~knak~~DgdTpLi~AS~-----nGhLEVVKYLIS~Gd~e-  395 (629)
                      .|+.|.|+.-=-||||.||||+.++.++||++||.-  .+.+..|.-|+||.+.|+-     .-+.+||.-|..-||++ 
T Consensus       255 ~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNa  334 (452)
T KOG0514|consen  255 PLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNA  334 (452)
T ss_pred             HHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcch
Confidence            467888886555799999999999999999999987  4566677778888888874     45778888888888666 


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                          .|.|.||.|-..|.-++||-|.-.|||    |+.|.|+|.+|+.+||.|||+.||++=
T Consensus       335 KAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p  396 (452)
T KOG0514|consen  335 KASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVP  396 (452)
T ss_pred             hhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccC
Confidence                788888888888888888888888886    778888888888888888888888763

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.39  E-value=3.9e-13  Score=154.01  Aligned_cols=117  Identities=21%  Similarity=0.184  Sum_probs=103.7

Q ss_pred             HHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-
Q 006847          325 LLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-  395 (629)
Q Consensus       325 LlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-  395 (629)
                      -++.|++.|++.      |+||||.|+.+|+..+|||||+. |+.++++++|.||||.|+++||-+++.+|++.| +++ 
T Consensus       522 ~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  522 VAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA  601 (1143)
T ss_pred             HHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc
Confidence            355888899985      99999999999999999999999 779999999999999999999999999999999 555 


Q ss_pred             ---ccchHHHHHHHhCCchHHHHHHHhCcc---------ccccCchhhHhhhcChHHH
Q 006847          396 ---AFLGPLMRAAERGCMQVVQWFVKRGCR---------DMDLCLALTAATSSSQVEV  441 (629)
Q Consensus       396 ---~G~TPLI~ASenGhLEVVKYLIS~GAd---------d~~g~taL~tA~s~gq~eV  441 (629)
                         +|.|||++|.++|++.+||++...|+.         +.-|.+|.+.+-.+.....
T Consensus       602 ~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~~~~~~  659 (1143)
T KOG4177|consen  602 ADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEELDTDRQ  659 (1143)
T ss_pred             ccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHHHhhhhhh
Confidence               899999999999999999999999997         2347777777766655443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.38  E-value=2.7e-13  Score=149.87  Aligned_cols=113  Identities=24%  Similarity=0.257  Sum_probs=105.9

Q ss_pred             CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC---Ccc--ccchHHHHHHHhCC
Q 006847          336 NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAV--AFLGPLMRAAERGC  409 (629)
Q Consensus       336 ~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G---d~e--~G~TPLI~ASenGh  409 (629)
                      .|+|.|+-|+-+|+.++++.|++- |..+..|..|-+|||+|+++|+.|+||.|.+-+   |+.  .|.||||.|++.||
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh  127 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGH  127 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcc
Confidence            499999999999999999999998 778888899999999999999999999999998   333  89999999999999


Q ss_pred             chHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          410 MQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       410 LEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                      +|||.||++.|++    ++.+-|+|++|+.+|..+||.-|++.
T Consensus       128 ~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  128 LEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             hHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence            9999999999997    77899999999999999999999875

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=5e-13  Score=144.76  Aligned_cols=114  Identities=24%  Similarity=0.204  Sum_probs=93.1

Q ss_pred             hhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchH
Q 006847          339 QCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQV  412 (629)
Q Consensus       339 TPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEV  412 (629)
                      ++|+.|+.+|+.+.|+.||+. ++.|.+|.+|+||||+|+.+||.++|++|++.| |++    .|.||||.|+++|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            469999999999999999998 679999999999999999999999999999999 554    89999999999999999


Q ss_pred             HHHHHHh-------Ccc----ccccCchhhHhhhcChHHHHHhhhcCCChhhhh
Q 006847          413 VQWFVKR-------GCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQHVLA  455 (629)
Q Consensus       413 VKYLIS~-------GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~vl~  455 (629)
                      |++|++.       |++    +..|.+|+..++.....   ..-.+.+|++...
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~~~~~~---~~d~~~~p~p~~~  214 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSPISSH---HPDFSAVPQPMMG  214 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhhhhhhc---cccccccCccccc
Confidence            9999998       775    33466666655433222   2224566666543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.33  E-value=2.8e-12  Score=142.86  Aligned_cols=123  Identities=24%  Similarity=0.216  Sum_probs=76.6

Q ss_pred             HHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHH-----H-hhhhcccCCcchhhHHhhhcCccceehhhhccC
Q 006847          325 LLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQ-----I-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG  392 (629)
Q Consensus       325 LlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLIS-----I-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G  392 (629)
                      ..|.||+.|+|.      ||.|+|+|++.|+.|--.+-+.     . ...|..+.+|.||||.|.+.|+++.+|-....|
T Consensus       169 ~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~  248 (929)
T KOG0510|consen  169 AKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNG  248 (929)
T ss_pred             HHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCc
Confidence            445677777772      5555555555555555555554     1 334445566667777777777777776666666


Q ss_pred             Ccc--------------------ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhc
Q 006847          393 NAV--------------------AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLP  447 (629)
Q Consensus       393 d~e--------------------~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS  447 (629)
                      ++.                    +|.||||+||++|+.+-|+.|++.|++    ..++.||||.|+.+|+.+.++-|+.
T Consensus       249 ~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  249 KKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQ  327 (929)
T ss_pred             cccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHh
Confidence            221                    456777777777777777777777764    3456667777777777666666666

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.29  E-value=8.9e-12  Score=97.93  Aligned_cols=94  Identities=28%  Similarity=0.387  Sum_probs=84.6

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHHh-hhhcccCCcchhhHHhhhcCccceehhhhccC-Cc-
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQIA-QRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA-  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISIA-~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~-  394 (629)
                      .++++|++.|++.      |.|||+.|...+..+++++|++.. ..+..+..+.||+++|.++++.+++++|++.| +. 
T Consensus        21 ~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~  100 (126)
T cd00204          21 EVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN  100 (126)
T ss_pred             HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc
Confidence            6888999999982      999999999999999999999984 56777888999999999999999999999987 22 


Q ss_pred             ---cccchHHHHHHHhCCchHHHHHH
Q 006847          395 ---VAFLGPLMRAAERGCMQVVQWFV  417 (629)
Q Consensus       395 ---e~G~TPLI~ASenGhLEVVKYLI  417 (629)
                         ..+.|||++|...++.+++++|+
T Consensus       101 ~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204         101 ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence               27899999999999999999985

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.27  E-value=5.1e-12  Score=122.84  Aligned_cols=113  Identities=18%  Similarity=0.167  Sum_probs=94.8

Q ss_pred             HHHHHHHhcCCCC-------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN-------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~-------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      ..++-|++--+|.       ++||||-|+++||+++|+-||.- |++++++.+|+|||+.|++-..++|+-.|.+-| |+
T Consensus        77 ~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDV  156 (228)
T KOG0512|consen   77 TEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADV  156 (228)
T ss_pred             HHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcc
Confidence            3455666666662       99999999999999999999977 889999999999999999999999999999999 55


Q ss_pred             c----ccchHHHHHHHh-CCchHHHHHHHh-----CccccccCchhhHhhhc
Q 006847          395 V----AFLGPLMRAAER-GCMQVVQWFVKR-----GCRDMDLCLALTAATSS  436 (629)
Q Consensus       395 e----~G~TPLI~ASen-GhLEVVKYLIS~-----GAdd~~g~taL~tA~s~  436 (629)
                      +    +-+||||.|+-+ ++..-+.||...     |-..+.+.||+.+|-.-
T Consensus       157 nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  157 NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            5    569999999988 678888888643     33466788898887543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.25  E-value=5.1e-12  Score=126.12  Aligned_cols=121  Identities=19%  Similarity=0.113  Sum_probs=106.4

Q ss_pred             HHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHHhhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----c
Q 006847          328 LLVEGGADN------VNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----A  396 (629)
Q Consensus       328 sLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISIA~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~  396 (629)
                      .++.+|+--      +.+|+++++..-||++|- ++..+-.|+-|..|.||||||+..||++||++|...| |++    .
T Consensus       114 ttltN~~rgnevs~~p~s~~slsVhql~L~~~~-~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~  192 (296)
T KOG0502|consen  114 TTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVD-LLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKY  192 (296)
T ss_pred             eeecccccCCccccccCChhhHHHHHHHHHHHH-HHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhh
Confidence            345555542      889999999999998764 4556778889999999999999999999999999999 777    5


Q ss_pred             cchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          397 FLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       397 G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      -.+.|+.|++.|+-+||+.|..++.|    |-||-|||..|...+|.+.++-||...
T Consensus       193 resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sG  249 (296)
T KOG0502|consen  193 RESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSG  249 (296)
T ss_pred             hhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcC
Confidence            58999999999999999999999998    668999999999999999999999765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.24  E-value=9.9e-12  Score=129.99  Aligned_cols=113  Identities=23%  Similarity=0.265  Sum_probs=101.3

Q ss_pred             cchhHHHHhh-----cCCHHHHHHHHHHhhhhcccC-CcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHH
Q 006847          337 VNQCFLEASR-----FGSTELVRILLQIAQRNSLDV-DVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAA  405 (629)
Q Consensus       337 gnTPLL~AS~-----~GhLEVVKyLISIA~knak~~-DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~AS  405 (629)
                      |+||.|.|+-     .-+-++|-.|...++.|+|-. -|.|+|+.|..-|+.++||-|..-| |++    +|.|.||+||
T Consensus       302 GYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~  381 (452)
T KOG0514|consen  302 GYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAA  381 (452)
T ss_pred             cccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhh
Confidence            9999999874     456799999999999888754 4899999999999999999999999 655    8999999999


Q ss_pred             HhCCchHHHHHHHh-Ccc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          406 ERGCMQVVQWFVKR-GCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       406 enGhLEVVKYLIS~-GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      |.||-||||.|... +||    |..|.|+|.+|...||-||.-.|-+|+
T Consensus       382 EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  382 EHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             hhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence            99999999998865 777    778999999999999999998877664

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.18  E-value=3e-11  Score=129.68  Aligned_cols=112  Identities=22%  Similarity=0.170  Sum_probs=79.7

Q ss_pred             HHHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHHhh-hhcccCC--------------------------
Q 006847          322 IQGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQIAQ-RNSLDVD--------------------------  368 (629)
Q Consensus       322 iqgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISIA~-knak~~D--------------------------  368 (629)
                      =+-++++|+|.|++.      ||||||.|+--||+.+|+|||++++ .-++|.|                          
T Consensus        85 ~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi  164 (527)
T KOG0505|consen   85 NLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGI  164 (527)
T ss_pred             cHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcc
Confidence            466788999999984      9999999999999999999999822 2223333                          


Q ss_pred             ---------------------------------cchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCc
Q 006847          369 ---------------------------------VDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCM  410 (629)
Q Consensus       369 ---------------------------------gdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhL  410 (629)
                                                       |-|+||.|+-+|+.++++.||.-| ++.    +||||||-|+-=|+-
T Consensus       165 ~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~  244 (527)
T KOG0505|consen  165 DIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQE  244 (527)
T ss_pred             cHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhH
Confidence                                             337777777777777777777777 322    677777777777777


Q ss_pred             hHHHHHHHhCccc----cccCchhhHh
Q 006847          411 QVVQWFVKRGCRD----MDLCLALTAA  433 (629)
Q Consensus       411 EVVKYLIS~GAdd----~~g~taL~tA  433 (629)
                      ++++.||+.||+-    .+|-||++.|
T Consensus       245 ~~~elL~~~ga~~d~~t~~g~~p~dv~  271 (527)
T KOG0505|consen  245 DACELLVEHGADMDAKTKMGETPLDVA  271 (527)
T ss_pred             hHHHHHHHhhcccchhhhcCCCCccch
Confidence            7777777777752    2455555444

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.17  E-value=1.7e-11  Score=92.15  Aligned_cols=53  Identities=28%  Similarity=0.327  Sum_probs=30.7

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhh
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLV  389 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLI  389 (629)
                      |.|||++|++.|++|+|++|++. ++.+..|.+|+|||++|+.+||++++|+||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45666666666766767666665 445556666666666666666666666664

...

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.17  E-value=2.5e-11  Score=130.36  Aligned_cols=123  Identities=24%  Similarity=0.230  Sum_probs=111.5

Q ss_pred             HHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC------C
Q 006847          327 GLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG------N  393 (629)
Q Consensus       327 KsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G------d  393 (629)
                      ..|+..|++.      |+|+||-++--.+.|+|++|++. |+.|..|++||||||-|+-.||+.+++|||+.|      |
T Consensus        57 ~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avN  136 (527)
T KOG0505|consen   57 RKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVN  136 (527)
T ss_pred             HHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhcc
Confidence            3677766663      99999999999999999999999 779999999999999999999999999999988      1


Q ss_pred             cc----------------------------------------------------------ccchHHHHHHHhCCchHHHH
Q 006847          394 AV----------------------------------------------------------AFLGPLMRAAERGCMQVVQW  415 (629)
Q Consensus       394 ~e----------------------------------------------------------~G~TPLI~ASenGhLEVVKY  415 (629)
                      .+                                                          .|-|.||.|+-+|+.+|.+.
T Consensus       137 sdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~l  216 (527)
T KOG0505|consen  137 SDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAAL  216 (527)
T ss_pred             CCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHH
Confidence            11                                                          16799999999999999999


Q ss_pred             HHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          416 FVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       416 LIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      |+..|.+    |..|+||||.|...|+.++.+.|+.|.
T Consensus       217 Ll~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g  254 (527)
T KOG0505|consen  217 LLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHG  254 (527)
T ss_pred             HHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhh
Confidence            9999995    778999999999999999999998876

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.13  E-value=4.3e-11  Score=123.24  Aligned_cols=102  Identities=21%  Similarity=0.150  Sum_probs=90.0

Q ss_pred             cCCCCcchhHHHHhhcCCHHHHHHHHHHhh-hhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHH
Q 006847          332 GGADNVNQCFLEASRFGSTELVRILLQIAQ-RNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAA  405 (629)
Q Consensus       332 gGaD~gnTPLL~AS~~GhLEVVKyLISIA~-knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~AS  405 (629)
                      .|-|-|++||++|+..||.-+|..||+.++ .|+-++.-|||||.|+.-||-+||..|++.- |++    .|+||||+|+
T Consensus        29 ~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyac  108 (448)
T KOG0195|consen   29 VGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYAC  108 (448)
T ss_pred             cccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhh
Confidence            455669999999999999999999999955 7777777779999999999999999999988 544    8999999999


Q ss_pred             HhCCchHHHHHHHhCcc----ccccCchhhHh
Q 006847          406 ERGCMQVVQWFVKRGCR----DMDLCLALTAA  433 (629)
Q Consensus       406 enGhLEVVKYLIS~GAd----d~~g~taL~tA  433 (629)
                      .-|+-+|..-||+.||.    +..|.|||+-|
T Consensus       109 fwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  109 FWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             hhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            99999999999999996    44577777655

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.12  E-value=9e-11  Score=105.39  Aligned_cols=109  Identities=18%  Similarity=0.164  Sum_probs=85.1

Q ss_pred             chhHHHHhhcCCHHHHHHHHHHhhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchH
Q 006847          338 NQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQV  412 (629)
Q Consensus       338 nTPLL~AS~~GhLEVVKyLISIA~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEV  412 (629)
                      ...++|+..||.++-||.-.-..---...+.|.||||||+-+|++++.+|||+.| |++    .|.|||.-|-+.||-.-
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            4578999999999888865443311113346889999999999999999999999 444    79999999999999999


Q ss_pred             HHHHHHhCccccccCchhhHhhhcChHHHHHhhh
Q 006847          413 VQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLL  446 (629)
Q Consensus       413 VKYLIS~GAdd~~g~taL~tA~s~gq~eVVkYLL  446 (629)
                      ||+|.+.||++-..--.+.+++..-..|-++-|+
T Consensus        83 VklLL~~GAdrt~~~PdG~~~~eate~edIr~LL  116 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGTALIEATEEEDIRELL  116 (117)
T ss_pred             HHHHHHcCcccceeCCCchhHHhhccHHHHHHHh
Confidence            9999999999766554555555555556555554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.12  E-value=7.8e-11  Score=88.63  Aligned_cols=50  Identities=26%  Similarity=0.416  Sum_probs=27.6

Q ss_pred             cchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhh
Q 006847          397 FLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLL  446 (629)
Q Consensus       397 G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLL  446 (629)
                      |.||||+|++.|++|+||||++.|++    |..|.||||.|+.+|+.++++|||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45666666666666666666666664    445666666666666666666654

...

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.08  E-value=1e-10  Score=129.88  Aligned_cols=161  Identities=20%  Similarity=0.173  Sum_probs=127.6

Q ss_pred             HHHHHHhcCCC------CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-
Q 006847          325 LLGLLVEGGAD------NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-  395 (629)
Q Consensus       325 LlKsLIEgGaD------~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-  395 (629)
                      +.++|.|..+=      +|.+||++|+-+|+.|+||.|+.- +..|+.+-.|.||||.|++.||.|||.||++-| |+- 
T Consensus        64 is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i  143 (854)
T KOG0507|consen   64 ISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFI  143 (854)
T ss_pred             HHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccc
Confidence            45566665543      499999999999999999999998 558999999999999999999999999999999 544 


Q ss_pred             ---ccchHHHHHHHhCCchHHHHHHHhCc------------cccccCchhhHhhhcChHHHHHhhhcCC-ChhhhhHhHH
Q 006847          396 ---AFLGPLMRAAERGCMQVVQWFVKRGC------------RDMDLCLALTAATSSSQVEVAAYLLPHV-PQHVLAALSI  459 (629)
Q Consensus       396 ---~G~TPLI~ASenGhLEVVKYLIS~GA------------dd~~g~taL~tA~s~gq~eVVkYLLS~v-Pq~vl~alsi  459 (629)
                         ++.|||-.|++-|..+||+.|.+.--            .+...-+|||.|..++|.++++-|+.+. .....+---.
T Consensus       144 ~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~gt  223 (854)
T KOG0507|consen  144 RNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDGT  223 (854)
T ss_pred             cCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccch
Confidence               78999999999999999999988711            1346778999999999999999999875 3334444344


Q ss_pred             HHHHHhcccCCCCccceeehhhcccCCCh
Q 006847          460 EILKAAGERSGGSLDGVAFLLHSDFLGDP  488 (629)
Q Consensus       460 eilkAA~~rs~gs~~GV~flL~SnFL~d~  488 (629)
                      ....||-   .|-..-|.|||.+---.+.
T Consensus       224 alheaal---cgk~evvr~ll~~gin~h~  249 (854)
T KOG0507|consen  224 ALHEAAL---CGKAEVVRFLLEIGINTHI  249 (854)
T ss_pred             hhhhHhh---cCcchhhhHHHhhcccccc
Confidence            4455555   5667777888766544433

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.08  E-value=2e-10  Score=124.86  Aligned_cols=78  Identities=24%  Similarity=0.190  Sum_probs=73.1

Q ss_pred             hhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHH
Q 006847          371 LALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEV  441 (629)
Q Consensus       371 TpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eV  441 (629)
                      ++|+.|+.+|+.++|+.|++.| |++    .|.||||+|+.+|+.++|++|++.|++    +..|.||||+|+..++.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            4699999999999999999999 554    799999999999999999999999996    5689999999999999999


Q ss_pred             HHhhhcC
Q 006847          442 AAYLLPH  448 (629)
Q Consensus       442 VkYLLS~  448 (629)
                      +++|+.+
T Consensus       164 v~~Ll~~  170 (664)
T PTZ00322        164 VQLLSRH  170 (664)
T ss_pred             HHHHHhC
Confidence            9999988

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.96  E-value=2.1e-09  Score=110.71  Aligned_cols=235  Identities=25%  Similarity=0.230  Sum_probs=159.5

Q ss_pred             CCCCcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-----ccchHHHHHH
Q 006847          333 GADNVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-----AFLGPLMRAA  405 (629)
Q Consensus       333 GaD~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-----~G~TPLI~AS  405 (629)
                      --|....||++|...|-+|-.+-|||- -+.|.+|-+|-+||.-|++.|+++.|+.|++-| |++     .+|||||.||
T Consensus         8 qld~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen    8 QLDAPKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             cccchhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence            345677899999999999999999987 347789999999999999999999999999999 666     6899999999


Q ss_pred             HhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChhhhhHhHH-HHHHHhcc------------c
Q 006847          406 ERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSI-EILKAAGE------------R  468 (629)
Q Consensus       406 enGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~vl~alsi-eilkAA~~------------r  468 (629)
                      -.|.-+|-..|...|++    +..|.|+--.|+-.||+|-|..+-.+||+.+|....- +...-+-+            -
T Consensus        88 LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t~~~leyyt~p~g~~~ep~~Pp~La~~~H~~~  167 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHITIDVLEYYTRPKGYEGEPEYPPELAVFIHSLC  167 (396)
T ss_pred             HcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhccccHHHHHHhccccccCCCCCCCHHHHHHHHHHH
Confidence            99999999999999997    5579999999999999999999999999998876531 10000000            0


Q ss_pred             CCCCccceeehhhcccCCChhhhH----H--HHHHhhcc----CCCCCChhHHHHH----HHhhcH-HHHHHHHhccchh
Q 006847          469 SGGSLDGVAFLLHSDFLGDPAATY----A--VADSIARS----DDEGVAPDLKVFL----REHWSE-AAFLDGLKQGDVH  533 (629)
Q Consensus       469 s~gs~~GV~flL~SnFL~d~~aTy----~--~Ad~iA~~----~~~~v~~~lk~fL----~e~WS~-~AF~~G~~~g~~H  533 (629)
                      ++-.++-|...++-+  .+|.-+-    .  +-|-+-+-    -|...--.+|+.+    ...=|+ .+ ..-.+.|++-
T Consensus       168 t~~nlHPVkIi~~v~--~~pll~~~~~l~k~v~dlvcEK~m~~~d~NEila~K~hy~~~~irc~~qfk~-~nkeKsgEnk  244 (396)
T KOG1710|consen  168 TSHNLHPVKIIFRVS--KYPLLLKYKKLIKYVIDLVCEKQMRCKDSNEILALKLHYILFSIRCTSQFKE-SNKEKSGENK  244 (396)
T ss_pred             hcccccceEEEEEcc--cCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHH-hhcccCchhH
Confidence            111234444444322  2232221    1  23333321    1111111223322    111122 11 1124567766


Q ss_pred             hhHH-HHHHhhcCCCccccCCCcchhhhhhhhhhhHHHH
Q 006847          534 YMNL-LRILKWGESPICLRDLPGPLRVAITYLPLYRECV  571 (629)
Q Consensus       534 f~n~-mrv~k~g~Spl~l~dLP~~l~vaiaYlPLYreC~  571 (629)
                      -..+ -||+||-++-=-.+-+..-|+=++.-+| ||||.
T Consensus       245 ~~~~~K~ilk~~~~dg~~~y~e~~lRe~vr~FP-y~e~t  282 (396)
T KOG1710|consen  245 SLQYAKLILKWQEGDGTRRYLEVMLREAVRSFP-YKEST  282 (396)
T ss_pred             HHHHHHHHHhhhccCCcHHHHHHHHHHHHHhCC-chHHH
Confidence            5444 3788887775555555666777888888 78884

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.96  E-value=4.1e-10  Score=86.54  Aligned_cols=48  Identities=44%  Similarity=0.540  Sum_probs=25.2

Q ss_pred             HHhcC-CCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHh
Q 006847          329 LVEGG-ADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFA  376 (629)
Q Consensus       329 LIEgG-aD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~A  376 (629)
                      |++.| +|.      |+||||+|+.+|+.|+|++||+. ++.+.+|.+|+|||++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56666 543      88888888888888888888865 66888888888888887

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.89  E-value=1.5e-09  Score=117.80  Aligned_cols=136  Identities=22%  Similarity=0.214  Sum_probs=100.8

Q ss_pred             HHHhcCCCC------cchh---HHHHhhcCCHHHHHHHHHHhhhhcccC-CcchhhHHhhhcCccceehhhhccC-Ccc-
Q 006847          328 LLVEGGADN------VNQC---FLEASRFGSTELVRILLQIAQRNSLDV-DVDLALGFASHYCKIGTMECLVEEG-NAV-  395 (629)
Q Consensus       328 sLIEgGaD~------gnTP---LL~AS~~GhLEVVKyLISIA~knak~~-DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-  395 (629)
                      .|-+.|..+      -++|   |+.|+-.|.+|+|+..|.--.--++.+ +|-||||-|.--||.+|||+||..| |++ 
T Consensus       532 ~LRk~gser~a~GRvrfnPLaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa  611 (752)
T KOG0515|consen  532 NLRKAGSERMAHGRVRFNPLALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNA  611 (752)
T ss_pred             hhccCCCccccccceecchHHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccC
Confidence            555656664      2345   588999999999999988755444444 4889999999999999999999999 666 


Q ss_pred             ---ccchHHHHHHHhCCchHHHHHHHhCccccc-cCchhhHhhhcCh------HHHHHhhhcCCChhhhhHhHHHHHHHh
Q 006847          396 ---AFLGPLMRAAERGCMQVVQWFVKRGCRDMD-LCLALTAATSSSQ------VEVAAYLLPHVPQHVLAALSIEILKAA  465 (629)
Q Consensus       396 ---~G~TPLI~ASenGhLEVVKYLIS~GAdd~~-g~taL~tA~s~gq------~eVVkYLLS~vPq~vl~alsieilkAA  465 (629)
                         +||||||+||.-+.+.++|.||+.|+-.-+ -....-+|...|.      .+-.+||-                  +
T Consensus       612 ~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~------------------~  673 (752)
T KOG0515|consen  612 ADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY------------------G  673 (752)
T ss_pred             ccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH------------------H
Confidence               899999999999999999999999995221 1113445555554      34455542                  3


Q ss_pred             cccCCCCc-cceeehhh
Q 006847          466 GERSGGSL-DGVAFLLH  481 (629)
Q Consensus       466 ~~rs~gs~-~GV~flL~  481 (629)
                      .+.+-|+. .||.|+|-
T Consensus       674 vqesmG~mN~G~vYAlw  690 (752)
T KOG0515|consen  674 VQESMGSMNKGVVYALW  690 (752)
T ss_pred             HHHhhcccccceeEEee
Confidence            34455655 89999874

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.80  E-value=6.5e-09  Score=107.44  Aligned_cols=82  Identities=22%  Similarity=0.156  Sum_probs=74.2

Q ss_pred             CcchhhHHhhhcCccceehhhhccC---Ccc--ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcCh
Q 006847          368 DVDLALGFASHYCKIGTMECLVEEG---NAV--AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQ  438 (629)
Q Consensus       368 DgdTpLi~AS~nGhLEVVKYLIS~G---d~e--~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq  438 (629)
                      -|..|||||++.||..+|+.|++.|   |..  ..-||||.|+..||-+||+-|++.-+|    +.-|+||||.||-.|+
T Consensus        33 hgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgy  112 (448)
T KOG0195|consen   33 HGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGY  112 (448)
T ss_pred             cCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcH
Confidence            3669999999999999999999999   333  568999999999999999999999998    3459999999999999


Q ss_pred             HHHHHhhhcCC
Q 006847          439 VEVAAYLLPHV  449 (629)
Q Consensus       439 ~eVVkYLLS~v  449 (629)
                      -.|++-|++..
T Consensus       113 dqiaedli~~g  123 (448)
T KOG0195|consen  113 DQIAEDLISCG  123 (448)
T ss_pred             HHHHHHHHhcc
Confidence            99999999854

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.80  E-value=4.2e-09  Score=120.89  Aligned_cols=149  Identities=23%  Similarity=0.215  Sum_probs=93.7

Q ss_pred             HHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-----------------------------------hh
Q 006847          323 QGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-----------------------------------AQ  361 (629)
Q Consensus       323 qgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-----------------------------------A~  361 (629)
                      ..++++||.-|+++      |++|||.|..-||--||..|+..                                   |+
T Consensus       770 ~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gan  849 (2131)
T KOG4369|consen  770 REEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGAN  849 (2131)
T ss_pred             HHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhcc
Confidence            45677888888875      88888888888888888777776                                   33


Q ss_pred             hhcccCCcchhhHHhhhcCccceehhhhccC-Ccc------ccchHHHHHHHhCCchHHHHHHHhCccc-----cccCch
Q 006847          362 RNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV------AFLGPLMRAAERGCMQVVQWFVKRGCRD-----MDLCLA  429 (629)
Q Consensus       362 knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e------~G~TPLI~ASenGhLEVVKYLIS~GAdd-----~~g~ta  429 (629)
                      +++++..-.|||-.|+.-|+.++|+.|.+-| .++      -|..|||.|+-|||-+.++.|.+-|.|.     -|-+|+
T Consensus       850 kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTa  929 (2131)
T KOG4369|consen  850 KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTA  929 (2131)
T ss_pred             ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccc
Confidence            4444444445555555555555555555555 221      3566777777777777777777777663     256777


Q ss_pred             hhHhhhcChHHHHHhhhcCC--ChhhhhHhHHHHHHHhcccCCCCcc
Q 006847          430 LTAATSSSQVEVAAYLLPHV--PQHVLAALSIEILKAAGERSGGSLD  474 (629)
Q Consensus       430 L~tA~s~gq~eVVkYLLS~v--Pq~vl~alsieilkAA~~rs~gs~~  474 (629)
                      |++|+--|..|||..||..-  =+|.-.+.++-++++|.   ||..+
T Consensus       930 ltla~fqgr~evv~lLLa~~anvehRaktgltplme~As---gGyvd  973 (2131)
T KOG4369|consen  930 LTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMAS---GGYVD  973 (2131)
T ss_pred             eeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhc---CCccc
Confidence            77777777777777777543  23333333444455554   55543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.75  E-value=3.8e-09  Score=121.27  Aligned_cols=135  Identities=21%  Similarity=0.153  Sum_probs=115.7

Q ss_pred             HHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHHh-hhhcccCC--cchhhHHhhhcCccceehhhhccC-Cc
Q 006847          325 LLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQIA-QRNSLDVD--VDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       325 LlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISIA-~knak~~D--gdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .+++|+..|+++      .+|||-.|+.-|.+++|+.|++-+ .+|+.+..  |-.||+.|+.|||-+.++.|..-| |+
T Consensus       839 vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdi  918 (2131)
T KOG4369|consen  839 VVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDI  918 (2131)
T ss_pred             HHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchh
Confidence            455788888886      789999999999999999999995 47776655  559999999999999999999999 44


Q ss_pred             c-----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC--------ChhhhhHh
Q 006847          395 V-----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV--------PQHVLAAL  457 (629)
Q Consensus       395 e-----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v--------Pq~vl~al  457 (629)
                      +     +-+|.|-.|+..|+-|||+.|+-..++    -.-|-|||.-++++|.+||=..||...        |+-.++++
T Consensus       919 NaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtal  998 (2131)
T KOG4369|consen  919 NAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTAL  998 (2131)
T ss_pred             ccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccc
Confidence            4     779999999999999999999999997    346899999999999999999999765        44445555


Q ss_pred             HH
Q 006847          458 SI  459 (629)
Q Consensus       458 si  459 (629)
                      .|
T Consensus       999 ti 1000 (2131)
T KOG4369|consen  999 TI 1000 (2131)
T ss_pred             ee
Confidence            54

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.74  E-value=6.8e-09  Score=79.83  Aligned_cols=38  Identities=32%  Similarity=0.267  Sum_probs=16.5

Q ss_pred             ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHh
Q 006847          396 AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAA  433 (629)
Q Consensus       396 ~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA  433 (629)
                      .|+||||+|+++|+.|+|+||+..||+    +..|.|||++|
T Consensus        15 ~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   15 YGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            455555555555555555555555554    34455555554

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.72  E-value=9.3e-09  Score=92.66  Aligned_cols=81  Identities=21%  Similarity=0.271  Sum_probs=74.6

Q ss_pred             cchhhHHhhhcCccceehhhhccC-Ccc---ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHH
Q 006847          369 VDLALGFASHYCKIGTMECLVEEG-NAV---AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVE  440 (629)
Q Consensus       369 gdTpLi~AS~nGhLEVVKYLIS~G-d~e---~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~e  440 (629)
                      ||-..+|+.+||.++-||--+..| |++   +|.||||+|+-.|.|++..|||+.||+    |..|-|||..|.--||.+
T Consensus         2 ~d~~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    2 GDMSVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             cchhHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            556779999999999999999999 666   899999999999999999999999996    567999999999999999


Q ss_pred             HHHhhhcCC
Q 006847          441 VAAYLLPHV  449 (629)
Q Consensus       441 VVkYLLS~v  449 (629)
                      .||+|++..
T Consensus        82 cVklLL~~G   90 (117)
T KOG4214|consen   82 CVKLLLQNG   90 (117)
T ss_pred             HHHHHHHcC
Confidence            999998764

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.43  E-value=3.3e-07  Score=102.80  Aligned_cols=114  Identities=18%  Similarity=0.077  Sum_probs=99.7

Q ss_pred             CCcchhHHHHhhcCCHHHHHHHHHH-hhhhc------------cc-----------CCcchhhHHhhhcCccceehhhhc
Q 006847          335 DNVNQCFLEASRFGSTELVRILLQI-AQRNS------------LD-----------VDVDLALGFASHYCKIGTMECLVE  390 (629)
Q Consensus       335 D~gnTPLL~AS~~GhLEVVKyLISI-A~kna------------k~-----------~DgdTpLi~AS~nGhLEVVKYLIS  390 (629)
                      ..|.||||.|..+-..|+|++||.. |+.++            +.           .-|++||-||+=.++.|+|.+|+.
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            3499999999999999999999998 43443            11           237799999999999999999999


Q ss_pred             cC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc------ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          391 EG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR------DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       391 ~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd------d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                      -| |++    .|+|-||.--..-..+.-+++++.|++      +..|-|||++|+.-|+.+|-+|+++.
T Consensus       262 ~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99 776    899999999988888999999999998      45699999999999999999998875

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.40  E-value=1.6e-07  Score=102.45  Aligned_cols=139  Identities=23%  Similarity=0.243  Sum_probs=97.2

Q ss_pred             HHHHHHHhhhCCCCCccchHHHHhhccchhhhhcccCCCCccccchHHHHHHHHHHHHh--cCCCCcchhHHHHhhcCCH
Q 006847          273 SAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGLLVE--GGADNVNQCFLEASRFGST  350 (629)
Q Consensus       273 safk~fldlagn~Ltgk~fteafdaaCfpltlfs~~~~pgwasG~sa~~iqgLlKsLIE--gGaD~gnTPLL~AS~~GhL  350 (629)
                      +--|+-|.=+||.=+++- .--|+    ||.|..-+-    -.|. -..+|..++-+-.  .-.|-|-|+||-|.--||+
T Consensus       527 ~~~rt~LRk~gser~a~G-Rvrfn----PLaLLLDaa----LeGE-ldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghy  596 (752)
T KOG0515|consen  527 RTKRTNLRKAGSERMAHG-RVRFN----PLALLLDAA----LEGE-LDLVQRIIYEVTDPSQPNDEGITALHNAICAGHY  596 (752)
T ss_pred             hhhhhhhccCCCcccccc-ceecc----hHHHHHhhh----hcch-HHHHHHHHHhhcCCCCCCccchhHHhhhhhcchh
Confidence            445677777777766653 11122    444432110    0011 1234444433322  2333499999999999999


Q ss_pred             HHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccCCcc------ccchHHHHHHHh--CCchHHHHHHHhCc
Q 006847          351 ELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAV------AFLGPLMRAAER--GCMQVVQWFVKRGC  421 (629)
Q Consensus       351 EVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~Gd~e------~G~TPLI~ASen--GhLEVVKYLIS~GA  421 (629)
                      |+||.||.. |+.|+-|.|||||||+|+....+-++|.||+-|...      ++-||.-+.=+.  |+-+-.|||--+.-
T Consensus       597 eIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vqe  676 (752)
T KOG0515|consen  597 EIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQE  676 (752)
T ss_pred             HHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHHHH
Confidence            999999999 789999999999999999999999999999999332      788888665544  88999999975543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.39  E-value=4.5e-07  Score=101.75  Aligned_cols=115  Identities=20%  Similarity=0.099  Sum_probs=99.1

Q ss_pred             cchhHHHHhh---cCCHHHHHHHHHHhhhhc------ccCCcchhhHHhhhcCccceehhhhccC-Ccc-----------
Q 006847          337 VNQCFLEASR---FGSTELVRILLQIAQRNS------LDVDVDLALGFASHYCKIGTMECLVEEG-NAV-----------  395 (629)
Q Consensus       337 gnTPLL~AS~---~GhLEVVKyLISIA~kna------k~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-----------  395 (629)
                      |.||||.|.-   .||.|+|++||.++-+-.      ....|.||||.|..|-..+.|++|+..| |+.           
T Consensus       143 GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~  222 (782)
T KOG3676|consen  143 GETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPD  222 (782)
T ss_pred             hhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcc
Confidence            9999999875   577799999999976333      3445889999999999999999999999 554           


Q ss_pred             ----c------------cchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCCh
Q 006847          396 ----A------------FLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       396 ----~------------G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq  451 (629)
                          .            |..||=.||=-+.-|+|++|++.|||    |-+|+|-||.-..+-..+.=+|++++--.
T Consensus       223 dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  223 DQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN  298 (782)
T ss_pred             cccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence                1            46799999999999999999999997    78999999999999888888888876533

>PF13606 Ank_3: Ankyrin repeat

Probab=98.37  E-value=2.8e-07  Score=64.74  Aligned_cols=29  Identities=24%  Similarity=0.371  Sum_probs=25.3

Q ss_pred             ccchHHHHHHHhCCchHHHHHHHhCcccc
Q 006847          396 AFLGPLMRAAERGCMQVVQWFVKRGCRDM  424 (629)
Q Consensus       396 ~G~TPLI~ASenGhLEVVKYLIS~GAdd~  424 (629)
                      +|+||||.|+++|+.|||||||+.|||-+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58899999999999999999999998743

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.20  E-value=1.2e-06  Score=61.09  Aligned_cols=29  Identities=31%  Similarity=0.342  Sum_probs=26.9

Q ss_pred             ccchHHHHHHHhCCchHHHHHHHhCcccc
Q 006847          396 AFLGPLMRAAERGCMQVVQWFVKRGCRDM  424 (629)
Q Consensus       396 ~G~TPLI~ASenGhLEVVKYLIS~GAdd~  424 (629)
                      +|.||||+|+++|+.++|++||+.||+-+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            58999999999999999999999999854

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.12  E-value=9e-07  Score=62.17  Aligned_cols=27  Identities=22%  Similarity=0.359  Sum_probs=18.7

Q ss_pred             CcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          368 DVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       368 DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      +|+|||++|+++|+.|+|||||+.| |+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4667777777777777777777776 44

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=97.92  E-value=3.6e-06  Score=58.65  Aligned_cols=25  Identities=20%  Similarity=0.321  Sum_probs=18.3

Q ss_pred             CcchhhHHhhhcCccceehhhhccC
Q 006847          368 DVDLALGFASHYCKIGTMECLVEEG  392 (629)
Q Consensus       368 DgdTpLi~AS~nGhLEVVKYLIS~G  392 (629)
                      ||+||||||+++|+.++|++||+.|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g   25 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG   25 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc
Confidence            5677777777777777777777777

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.92  E-value=6.3e-06  Score=89.51  Aligned_cols=84  Identities=19%  Similarity=0.101  Sum_probs=69.7

Q ss_pred             chhHHHHhhcCCHHHHHHH-HHHhhhhcccCCcchhhHHhhhcCccceehhhhccC--Ccc----ccchHHHHHHHhCCc
Q 006847          338 NQCFLEASRFGSTELVRIL-LQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEG--NAV----AFLGPLMRAAERGCM  410 (629)
Q Consensus       338 nTPLL~AS~~GhLEVVKyL-ISIA~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G--d~e----~G~TPLI~ASenGhL  410 (629)
                      -.++|+|+++|-+.-.|++ ++-.+.+.+|.|..|+||.|+-.||++||||||+.=  |++    -|+|||--|-.-+|.
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~  586 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHK  586 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcH
Confidence            3589999999999766654 555678999999999999999999999999999877  444    588999888888889


Q ss_pred             hHHHHHHHhCc
Q 006847          411 QVVQWFVKRGC  421 (629)
Q Consensus       411 EVVKYLIS~GA  421 (629)
                      ||||||-+..-
T Consensus       587 ~v~k~L~~~~~  597 (622)
T KOG0506|consen  587 EVVKLLEEAQY  597 (622)
T ss_pred             HHHHHHHHHhc
Confidence            99998887655

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.60  E-value=0.00011  Score=81.65  Aligned_cols=117  Identities=21%  Similarity=0.198  Sum_probs=79.6

Q ss_pred             chHHHHHHHHH----HHHh---cCCCC------cchhHHHHhhcCCHHHHHHHHHHhhhhc---ccCCcchhhHHhhhcC
Q 006847          317 ISATVIQGLLG----LLVE---GGADN------VNQCFLEASRFGSTELVRILLQIAQRNS---LDVDVDLALGFASHYC  380 (629)
Q Consensus       317 ~sa~~iqgLlK----sLIE---gGaD~------gnTPLL~AS~~GhLEVVKyLISIA~kna---k~~DgdTpLi~AS~nG  380 (629)
                      +|.++++..+.    -|+|   +|.|.      -.|-|++|+..|.-|+|||+|.-+-.+.   .|-+|+|+||-|+-.+
T Consensus       866 iseeil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  866 ISEEILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             ccHHHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhc
Confidence            56666554443    1333   45553      4467888888888888888888765444   3456778888888888


Q ss_pred             ccceehhhhccC----Ccc-ccchHHHHHHHhCCchHHHHHHHhCccccccCchhhHh
Q 006847          381 KIGTMECLVEEG----NAV-AFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAA  433 (629)
Q Consensus       381 hLEVVKYLIS~G----d~e-~G~TPLI~ASenGhLEVVKYLIS~GAdd~~g~taL~tA  433 (629)
                      +-.|+.|||+.|    +.+ .|.||--+|-+-|--+..-||-+++--++-+.-.|-+|
T Consensus       946 ~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq~yk~i~~ed~eta 1003 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQNYKVIGHEDLETA 1003 (1004)
T ss_pred             chHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhhchhhccccchhcc
Confidence            888888888888    333 68888877777788888888877776655554444433

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=97.56  E-value=0.00011  Score=76.81  Aligned_cols=78  Identities=22%  Similarity=0.153  Sum_probs=66.3

Q ss_pred             CcchhHHHHhhcCCHHHHHHHHHH-hhhhc-ccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhC
Q 006847          336 NVNQCFLEASRFGSTELVRILLQI-AQRNS-LDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERG  408 (629)
Q Consensus       336 ~gnTPLL~AS~~GhLEVVKyLISI-A~kna-k~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenG  408 (629)
                      +|-|||+-|++.|.+|+|+.||.. |+.|. .+-.++|||+||+-.|+-+|...|.+.| ...    -|.|+--+||.-|
T Consensus        44 sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG  123 (396)
T KOG1710|consen   44 SGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVG  123 (396)
T ss_pred             CcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhc
Confidence            599999999999999999999999 55655 3344679999999999999999999999 222    6899999999888


Q ss_pred             CchHH
Q 006847          409 CMQVV  413 (629)
Q Consensus       409 hLEVV  413 (629)
                      |-+-|
T Consensus       124 ~H~CV  128 (396)
T KOG1710|consen  124 HHECV  128 (396)
T ss_pred             chHHH
Confidence            75544

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.37  E-value=9.1e-05  Score=80.82  Aligned_cols=87  Identities=17%  Similarity=0.132  Sum_probs=74.2

Q ss_pred             cCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCc-----cccccCchhhHhhh
Q 006847          366 DVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGC-----RDMDLCLALTAATS  435 (629)
Q Consensus       366 ~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GA-----dd~~g~taL~tA~s  435 (629)
                      .+|+-.++.||+++|.+..++-+.=-| |.+    +-.|.||.||-.||.+||||||+.=-     +|--|+|||+-|-.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            344558999999999999999888888 554    78999999999999999999998632     25569999999999


Q ss_pred             cChHHHHHhhhcCCChh
Q 006847          436 SSQVEVAAYLLPHVPQH  452 (629)
Q Consensus       436 ~gq~eVVkYLLS~vPq~  452 (629)
                      +.|.+|++||....-++
T Consensus       583 F~h~~v~k~L~~~~~~y  599 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQYPY  599 (622)
T ss_pred             cCcHHHHHHHHHHhccc
Confidence            99999999998776433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.33  E-value=0.00011  Score=72.86  Aligned_cols=83  Identities=13%  Similarity=-0.031  Sum_probs=65.4

Q ss_pred             hhhcccCCcchhhHHhhhcCccceehhhhccC--Ccc----ccchHHHHHHHhCCchHHHHHHHhCccc----cccCchh
Q 006847          361 QRNSLDVDVDLALGFASHYCKIGTMECLVEEG--NAV----AFLGPLMRAAERGCMQVVQWFVKRGCRD----MDLCLAL  430 (629)
Q Consensus       361 ~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G--d~e----~G~TPLI~ASenGhLEVVKYLIS~GAdd----~~g~taL  430 (629)
                      ++|+.|..|+|||++|+..|..|.|+||+..|  .+.    .|++.+-.|=++|+.+||+.|.+.-++.    +-..++=
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~~e~   83 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSRDEA   83 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCCCCCc
Confidence            47888999999999999999999999999999  222    7999999998999999999999998752    2233444


Q ss_pred             hHhhhcChHHHHH
Q 006847          431 TAATSSSQVEVAA  443 (629)
Q Consensus       431 ~tA~s~gq~eVVk  443 (629)
                      ..+|..|+..+-+
T Consensus        84 lfyCE~Cd~~ip~   96 (223)
T KOG2384|consen   84 LFYCEVCDIYIPN   96 (223)
T ss_pred             cchhhhhhhhccC
Confidence            4566666655433

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.29  E-value=0.00031  Score=78.20  Aligned_cols=86  Identities=20%  Similarity=0.144  Sum_probs=77.5

Q ss_pred             cccCCcchhhHHhhhcCccceehhhhccCCc-------cccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhH
Q 006847          364 SLDVDVDLALGFASHYCKIGTMECLVEEGNA-------VAFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTA  432 (629)
Q Consensus       364 ak~~DgdTpLi~AS~nGhLEVVKYLIS~Gd~-------e~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~t  432 (629)
                      ..+-|--+-||||++.|.-|||||+.+-|-.       ++|.|.||+|+-.+.--|-+|||..||.    |..|.||-..
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~er  973 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQER  973 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHH
Confidence            3666667999999999999999999999922       3899999999999999999999999995    6689999999


Q ss_pred             hhhcChHHHHHhhhcCC
Q 006847          433 ATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       433 A~s~gq~eVVkYLLS~v  449 (629)
                      |-+-+.-|.+.||.+.-
T Consensus       974 aqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  974 AQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHhcCCchHHHHHhhhh
Confidence            99999999999998764

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.15  E-value=0.00041  Score=76.19  Aligned_cols=99  Identities=20%  Similarity=0.074  Sum_probs=79.3

Q ss_pred             hhcccCCcch------hhHHhhhcCccceehhhhccC------CccccchHHHHHHHhCCchHHHHHHHhCcc----ccc
Q 006847          362 RNSLDVDVDL------ALGFASHYCKIGTMECLVEEG------NAVAFLGPLMRAAERGCMQVVQWFVKRGCR----DMD  425 (629)
Q Consensus       362 knak~~DgdT------pLi~AS~nGhLEVVKYLIS~G------d~e~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~  425 (629)
                      +-++|-||-|      -||--.+.|.+||.=-|++.|      +++.|.||||.||.-|..--|..|+=-|||    |-+
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~  199 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSS  199 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCC
Confidence            3446666554      488889999999999999999      455899999999999987778888888887    668


Q ss_pred             cCchhhHhhhcChHHHHHhhhcCCChhhhhHhHHHHH
Q 006847          426 LCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEIL  462 (629)
Q Consensus       426 g~taL~tA~s~gq~eVVkYLLS~vPq~vl~alsieil  462 (629)
                      |.||++.|-+.||+++++.|...  +|-++...+--+
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e~--~y~vtDR~~f~l  234 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVEI--QYELTDRLAFYL  234 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHHH--HHHHHHHHHHHH
Confidence            99999999999999999888754  455555555444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.08  E-value=0.0014  Score=76.02  Aligned_cols=111  Identities=17%  Similarity=0.048  Sum_probs=95.9

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHHhhh--hcccCCcchhhHHhhhcCccceehhhhccC--Ccc----ccchHHHHHHHhC
Q 006847          337 VNQCFLEASRFGSTELVRILLQIAQR--NSLDVDVDLALGFASHYCKIGTMECLVEEG--NAV----AFLGPLMRAAERG  408 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISIA~k--nak~~DgdTpLi~AS~nGhLEVVKYLIS~G--d~e----~G~TPLI~ASenG  408 (629)
                      |+|=|+.+...|+-=++..+|.-+.+  .-.|.||..-+|+ +..+|+|..=+||++-  +.+    .|+|||++|+.+|
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G  652 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRG  652 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcC
Confidence            89999999999999999999986443  3367777777777 7789999999999877  333    8999999999999


Q ss_pred             CchHHHHHHHhCcc----------ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          409 CMQVVQWFVKRGCR----------DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       409 hLEVVKYLIS~GAd----------d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                      |-..|..|++.|++          .-.|+|+-..|-++|+-.+..||-+.
T Consensus       653 ~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  653 REKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999995          23699999999999999999999887

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.06  E-value=0.0014  Score=70.63  Aligned_cols=51  Identities=27%  Similarity=0.264  Sum_probs=46.1

Q ss_pred             hhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCc
Q 006847          371 LALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGC  421 (629)
Q Consensus       371 TpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GA  421 (629)
                      --|..|++-|.+|.|+|||+-| |++    =.+.||..||--||-+|||+|.++||
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            5578999999999999999999 666    35899999999999999999999998

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.84  E-value=0.00078  Score=72.40  Aligned_cols=53  Identities=28%  Similarity=0.290  Sum_probs=49.5

Q ss_pred             hHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC
Q 006847          340 CFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG  392 (629)
Q Consensus       340 PLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G  392 (629)
                      -|-+|++.|-+|.||||++- -+.|++|.--+.||.+||-.||.+|||.|.++|
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenG   92 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENG   92 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcC
Confidence            46789999999999999997 458889999999999999999999999999999

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=96.83  E-value=0.00052  Score=78.88  Aligned_cols=73  Identities=21%  Similarity=0.146  Sum_probs=59.1

Q ss_pred             hcccCCcchhhHHhhhcCccceehhhhccC------CccccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhH
Q 006847          363 NSLDVDVDLALGFASHYCKIGTMECLVEEG------NAVAFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTA  432 (629)
Q Consensus       363 nak~~DgdTpLi~AS~nGhLEVVKYLIS~G------d~e~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~t  432 (629)
                      |-+|..|.|+||.|+..++-++++.|+.-|      |.+.||||||+|-..||++-+-.|.+.|+.    |.+|..||..
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~  125 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQF  125 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHH
Confidence            347888888888888888888888888888      556888888888888888888888888883    7777778765


Q ss_pred             hhh
Q 006847          433 ATS  435 (629)
Q Consensus       433 A~s  435 (629)
                      -+.
T Consensus       126 ~~r  128 (1267)
T KOG0783|consen  126 LSR  128 (1267)
T ss_pred             Hhh
Confidence            443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=96.77  E-value=0.0016  Score=64.93  Aligned_cols=137  Identities=17%  Similarity=0.089  Sum_probs=88.0

Q ss_pred             ccCCcc----ccchHHHHHHHhCCchHHHHHHHhC-cc----ccccCchhhHhhhcChHHHHHhhhcCCChhhhhHhHHH
Q 006847          390 EEGNAV----AFLGPLMRAAERGCMQVVQWFVKRG-CR----DMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIE  460 (629)
Q Consensus       390 S~Gd~e----~G~TPLI~ASenGhLEVVKYLIS~G-Ad----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~vl~alsie  460 (629)
                      |+||++    -||||||+|+..|.-|+|+||+.+| ++    |.-+.+++.+|=..|+.+||..|-+..     ...+  
T Consensus         1 se~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~-----~ets--   73 (223)
T KOG2384|consen    1 SEGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND-----RETS--   73 (223)
T ss_pred             CCCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh-----ccCC--
Confidence            345444    5899999999999999999999999 43    677889999999999999999887641     1111  


Q ss_pred             HHHHhcccCCCCccceeehhhcccCCC---hhhhHHHHHHhhccCC----------CCCChhHHHHHHHhhcHHHHHHHH
Q 006847          461 ILKAAGERSGGSLDGVAFLLHSDFLGD---PAATYAVADSIARSDD----------EGVAPDLKVFLREHWSEAAFLDGL  527 (629)
Q Consensus       461 ilkAA~~rs~gs~~GV~flL~SnFL~d---~~aTy~~Ad~iA~~~~----------~~v~~~lk~fL~e~WS~~AF~~G~  527 (629)
                          --+.|.....+..|=+.--|.-|   +.---..+--+.-..-          ..-++-+|--++.-|+|++=.-=-
T Consensus        74 ----~p~nss~~e~lfyCE~Cd~~ip~~~~snH~tSttHllsl~~~pa~k~~p~~i~pks~GyrLl~~~GW~pe~GLGp~  149 (223)
T KOG2384|consen   74 ----HPMNSSRDEALFYCEVCDIYIPNSKKSNHFTSTTHLLSLQHIPANKFQPHLIKPKSLGYRLLSQYGWSPEAGLGPE  149 (223)
T ss_pred             ----CcccCCCCCccchhhhhhhhccCCCCccchhhHHHHhhhccCCCCCCCCCcCCCCCchHHHHHhcCCCcccCCCcc
Confidence                01334455667777777666666   2222222222221111          123345677888999998432223


Q ss_pred             hccchhhhHH
Q 006847          528 KQGDVHYMNL  537 (629)
Q Consensus       528 ~~g~~Hf~n~  537 (629)
                      ++|++-=+--
T Consensus       150 ~~Grr~PvrT  159 (223)
T KOG2384|consen  150 NQGRRAPVRT  159 (223)
T ss_pred             ccCcccchhH
Confidence            4555544443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=96.59  E-value=0.0036  Score=69.14  Aligned_cols=80  Identities=23%  Similarity=0.197  Sum_probs=60.2

Q ss_pred             hHHHHhhcCCHHHHHHHHHH-hhhhccc-CCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchH
Q 006847          340 CFLEASRFGSTELVRILLQI-AQRNSLD-VDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQV  412 (629)
Q Consensus       340 PLL~AS~~GhLEVVKyLISI-A~knak~-~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEV  412 (629)
                      -||--++-|.+|+-=+||+. |+.|--+ -.|+||||.|++.|+.--++.|.=-| |+.    +|.||+++|=..||=|+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            45566888889988888888 3344332 23789999999999988888888777 444    78999999988888777


Q ss_pred             HHHHHHh
Q 006847          413 VQWFVKR  419 (629)
Q Consensus       413 VKYLIS~  419 (629)
                      ..-|++.
T Consensus       216 aeRl~e~  222 (669)
T KOG0818|consen  216 AERLVEI  222 (669)
T ss_pred             HHHHHHH
Confidence            6655553

>smart00248 ANK ankyrin repeats

Probab=96.45  E-value=0.0033  Score=37.53  Aligned_cols=27  Identities=33%  Similarity=0.479  Sum_probs=21.9

Q ss_pred             ccchHHHHHHHhCCchHHHHHHHhCcc
Q 006847          396 AFLGPLMRAAERGCMQVVQWFVKRGCR  422 (629)
Q Consensus       396 ~G~TPLI~ASenGhLEVVKYLIS~GAd  422 (629)
                      .|.|||+.|++.|+.++|++|++.|.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            367888888888888888888888764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.19  E-value=0.0024  Score=38.18  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=13.6

Q ss_pred             cchhhHHhhhcCccceehhhhccC
Q 006847          369 VDLALGFASHYCKIGTMECLVEEG  392 (629)
Q Consensus       369 gdTpLi~AS~nGhLEVVKYLIS~G  392 (629)
                      |+|||++|.++++.+++++|++.|
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            455555555555555555555554

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=96.14  E-value=0.0065  Score=68.03  Aligned_cols=88  Identities=20%  Similarity=0.215  Sum_probs=61.8

Q ss_pred             hhHHHHhhcCCHHHHHHHHHHhhhhcc-----cCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhC
Q 006847          339 QCFLEASRFGSTELVRILLQIAQRNSL-----DVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERG  408 (629)
Q Consensus       339 TPLL~AS~~GhLEVVKyLISIA~knak-----~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenG  408 (629)
                      +-|+-|...--+-.+-.||-.+.++-+     +-||.||||.|++.|+..+.+.||=-| |+.    .|+|+|.+|=+.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            356666666555555566655554432     234568888888888888888888666 443    7888888888888


Q ss_pred             CchHHHHHHHhCcccccc
Q 006847          409 CMQVVQWFVKRGCRDMDL  426 (629)
Q Consensus       409 hLEVVKYLIS~GAdd~~g  426 (629)
                      .-|++.-|+..||.++-+
T Consensus       706 sqec~d~llq~gcp~e~~  723 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPDECG  723 (749)
T ss_pred             cHHHHHHHHHcCCCcccc
Confidence            888888888888876543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=95.78  E-value=0.0029  Score=73.53  Aligned_cols=80  Identities=13%  Similarity=0.021  Sum_probs=69.4

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHHhh--hhcccCCcchhhHHhhhcCccceehhhhccC-------C--cc--ccchHHHH
Q 006847          337 VNQCFLEASRFGSTELVRILLQIAQ--RNSLDVDVDLALGFASHYCKIGTMECLVEEG-------N--AV--AFLGPLMR  403 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISIA~--knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-------d--~e--~G~TPLI~  403 (629)
                      |-.+|   +..|++|-+.+|++++-  .+-.|..|+|||+||+..||..++.+|++.|       |  ++  .|.|+--.
T Consensus       610 gV~hf---ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~l  686 (975)
T KOG0520|consen  610 GVIHF---CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADL  686 (975)
T ss_pred             ChhhH---hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhh
Confidence            44455   88899999999999844  6669999999999999999999999999988       1  11  69999999


Q ss_pred             HHHhCCchHHHHHHHh
Q 006847          404 AAERGCMQVVQWFVKR  419 (629)
Q Consensus       404 ASenGhLEVVKYLIS~  419 (629)
                      |..+||-.+--||-+.
T Consensus       687 a~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  687 ARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcccccchHHHHhhh
Confidence            9999999999999887

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=95.61  E-value=0.016  Score=65.13  Aligned_cols=79  Identities=20%  Similarity=0.226  Sum_probs=65.5

Q ss_pred             chHHHHHHHHH--HHHhcCCC----------CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccc
Q 006847          317 ISATVIQGLLG--LLVEGGAD----------NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIG  383 (629)
Q Consensus       317 ~sa~~iqgLlK--sLIEgGaD----------~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLE  383 (629)
                      ++|++-+.|--  +|+-+|--          .|.|+||.|++.|+.++.+.||=- ++..+.|+.|+|||.||=++|--|
T Consensus       629 l~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqe  708 (749)
T KOG0705|consen  629 LRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQE  708 (749)
T ss_pred             HHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHH
Confidence            46777665543  45555543          388999999999999999999976 668889999999999999999999


Q ss_pred             eehhhhccCCcc
Q 006847          384 TMECLVEEGNAV  395 (629)
Q Consensus       384 VVKYLIS~Gd~e  395 (629)
                      +++-|+.-|=++
T Consensus       709 c~d~llq~gcp~  720 (749)
T KOG0705|consen  709 CIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHcCCCc
Confidence            999999999333

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=95.52  E-value=0.0069  Score=70.12  Aligned_cols=70  Identities=23%  Similarity=0.131  Sum_probs=58.3

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCC-cchhhHHhhhcCccceehhhhccC-----CccccchHHHHHHH
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVD-VDLALGFASHYCKIGTMECLVEEG-----NAVAFLGPLMRAAE  406 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~D-gdTpLi~AS~nGhLEVVKYLIS~G-----d~e~G~TPLI~ASe  406 (629)
                      |.|.||.|+..|..++++.||+- +..+.+|.+ |+||||-|.+|||+|-+-.|.+-|     ...+|+.||-.-++
T Consensus        52 GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   52 GRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             ccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence            89999999999999999999988 446666665 889999999999999999999999     34489999954444

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.39  E-value=0.014  Score=67.15  Aligned_cols=80  Identities=23%  Similarity=0.158  Sum_probs=60.2

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHHhhhhcccCCcchhhHHhhhcCccceehhhhccCCc----------c-----ccchHH
Q 006847          337 VNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNA----------V-----AFLGPL  401 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISIA~knak~~DgdTpLi~AS~nGhLEVVKYLIS~Gd~----------e-----~G~TPL  401 (629)
                      |-+.|+.|..|-++|++..|+.--      .+.-.||.+|...|..+.|+.++..-+.          +     .+.|||
T Consensus        62 Gr~al~iai~nenle~~eLLl~~~------~~~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPl  135 (822)
T KOG3609|consen   62 GRLALHIAIDNENLELQELLLDTS------SEEGDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPL  135 (822)
T ss_pred             hhhceecccccccHHHHHHHhcCc------cccchHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHH
Confidence            777777777777777777777532      1224567777777777777777765411          1     579999


Q ss_pred             HHHHHhCCchHHHHHHHhCcc
Q 006847          402 MRAAERGCMQVVQWFVKRGCR  422 (629)
Q Consensus       402 I~ASenGhLEVVKYLIS~GAd  422 (629)
                      |.||-.+++|+||.|+.+|+.
T Consensus       136 iLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen  136 MLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             HHHHHhcchHHHHHHHHcCCC
Confidence            999999999999999999995

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.06  E-value=0.036  Score=63.97  Aligned_cols=115  Identities=22%  Similarity=0.161  Sum_probs=95.6

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHHh-----hhhcccCCcchhhHHhhhcCccceehhhhccCCccccchHHHHHHHhCCch
Q 006847          337 VNQCFLEASRFGSTELVRILLQIA-----QRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQ  411 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISIA-----~knak~~DgdTpLi~AS~nGhLEVVKYLIS~Gd~e~G~TPLI~ASenGhLE  411 (629)
                      +.--++.|+.+|..=+||-.+.-+     +.|+.|--|.++|+.|..|-++|+++.|.+-..-. |. .|-.|-..|.-+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-gd-ALL~aI~~~~v~  102 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-GD-ALLLAIAVGSVP  102 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-ch-HHHHHHHHHHHH
Confidence            344789999999999999888773     46778888999999999999999999999877333 44 455899999999


Q ss_pred             HHHHHHHhCccc--------------cccCchhhHhhhcChHHHHHhhhcC---CChhh
Q 006847          412 VVQWFVKRGCRD--------------MDLCLALTAATSSSQVEVAAYLLPH---VPQHV  453 (629)
Q Consensus       412 VVKYLIS~GAdd--------------~~g~taL~tA~s~gq~eVVkYLLS~---vPq~v  453 (629)
                      .|+.+++.-.+.              ..+-||+..|+..-++|+++.|+..   ||+|-
T Consensus       103 ~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen  103 LVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             HHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            999999876642              3578999999999999999999975   46654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.86  E-value=0.033  Score=61.88  Aligned_cols=54  Identities=20%  Similarity=0.070  Sum_probs=30.2

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhc
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVE  390 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS  390 (629)
                      |+||||.|++-||.+-+++|++. |..--+|++|+|||+-|.-+|.-+++.-++-
T Consensus        55 g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   55 GRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             CCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHH
Confidence            55666666666666666666655 3344455556666666655555554444443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.40  E-value=0.043  Score=60.98  Aligned_cols=48  Identities=19%  Similarity=0.171  Sum_probs=23.5

Q ss_pred             hhcccCCcchhhHHhhhcCccceehhhhccCC-c----cccchHHHHHHHhCC
Q 006847          362 RNSLDVDVDLALGFASHYCKIGTMECLVEEGN-A----VAFLGPLMRAAERGC  409 (629)
Q Consensus       362 knak~~DgdTpLi~AS~nGhLEVVKYLIS~Gd-~----e~G~TPLI~ASenGh  409 (629)
                      .+.+|..|+||||.|..-||.+-++-|++.|. .    ++||+||+.|.-.|.
T Consensus        48 id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   48 IDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             eccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC
Confidence            33455555555555555555555555555551 1    145555555555543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=93.78  E-value=0.06  Score=61.95  Aligned_cols=80  Identities=24%  Similarity=0.239  Sum_probs=48.4

Q ss_pred             CCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcC
Q 006847          367 VDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSS  437 (629)
Q Consensus       367 ~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~g  437 (629)
                      ..|-|+||.|..+|-..+++.|...| |.+    .|.|||+.+-..||...+..|.++|++    +..|.+||+.|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            34556666666666666666666666 333    566666666666666666666666665    334666666665555


Q ss_pred             hHHHHHhhh
Q 006847          438 QVEVAAYLL  446 (629)
Q Consensus       438 q~eVVkYLL  446 (629)
                      +.+++-.|.
T Consensus       734 ~~d~~~l~~  742 (785)
T KOG0521|consen  734 NADIVLLLR  742 (785)
T ss_pred             cccHHHHHh
Confidence            555554443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=92.83  E-value=0.064  Score=61.69  Aligned_cols=84  Identities=23%  Similarity=0.113  Sum_probs=74.0

Q ss_pred             CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCC
Q 006847          336 NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGC  409 (629)
Q Consensus       336 ~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGh  409 (629)
                      +|.|+||.|..+|.+=.+-.|++. |+.|.+|.-|+||||-+...||...+..|.+.| ++.    +|++||.+|.+-.+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            478999999999999999999999 669999999999999999999999999999999 444    89999999988877


Q ss_pred             chHHHHHHHh
Q 006847          410 MQVVQWFVKR  419 (629)
Q Consensus       410 LEVVKYLIS~  419 (629)
                      -++|=.|-.-
T Consensus       735 ~d~~~l~~l~  744 (785)
T KOG0521|consen  735 ADIVLLLRLA  744 (785)
T ss_pred             ccHHHHHhhh
Confidence            6666655443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=92.15  E-value=0.14  Score=56.98  Aligned_cols=59  Identities=22%  Similarity=0.280  Sum_probs=47.9

Q ss_pred             cceehhhhccC-Ccc----------ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHH
Q 006847          382 IGTMECLVEEG-NAV----------AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAA  443 (629)
Q Consensus       382 LEVVKYLIS~G-d~e----------~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVk  443 (629)
                      -+.++||++++ +.+          -..||||+|+..|--+.|+||.+.|||    |-+|.||-.++.   .-||..
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~  477 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKS  477 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHH
Confidence            56789999998 332          378999999999999999999999997    667999988776   445543

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=87.23  E-value=0.63  Score=52.16  Aligned_cols=70  Identities=21%  Similarity=0.148  Sum_probs=51.0

Q ss_pred             ccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCccccccCchhhHhhhcChH
Q 006847          365 LDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQV  439 (629)
Q Consensus       365 k~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAdd~~g~taL~tA~s~gq~  439 (629)
                      ++.---|+||||+.+|.-+.|+||.++| |+.    .|.||.+.+.   .-||=.-|+   +.-.-|-+...++-     
T Consensus       426 ~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~---a~~~l~es~~nW~~-----  494 (591)
T KOG2505|consen  426 NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI---ARRVLNESFGNWAR-----  494 (591)
T ss_pred             cccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH---HHHHhcccccchhh-----
Confidence            3333559999999999999999999999 554    8999998877   456766777   43333444455543     


Q ss_pred             HHHHhhhcCCChh
Q 006847          440 EVAAYLLPHVPQH  452 (629)
Q Consensus       440 eVVkYLLS~vPq~  452 (629)
                             .|||+|
T Consensus       495 -------t~i~~P  500 (591)
T KOG2505|consen  495 -------THIPEP  500 (591)
T ss_pred             -------hcCCCc
Confidence                   479988

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	629
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 18/138 (13%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
            L++ GA   N            A+R G TE+ + LLQ  A+ N+   D    L  A+  
Sbjct: 32  NLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI 90

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLAL 430
                ++ L+E     N     G  PL  AA  G ++ V   +++     C        L
Sbjct: 91  GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL 150

Query: 431 TAATSSSQVEVAAYLLPH 448
             A    +V VA  LL  
Sbjct: 151 HVAAKYGKVRVAELLLER 168

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.3 bits (142), Expect = 4e-09
 Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           AS  G   +V+ LLQ  A  N  +V V+  L  A+        + L++     NA A   
Sbjct: 21  ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80

Query: 400 --PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLLPH 448
             PL  AA  G   +V+  ++               L  A     VE    LL  
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.1 bits (139), Expect = 9e-09
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 18/138 (13%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
            L+E  A                A+++G   +  +LL+  A  N+   +    L  A H+
Sbjct: 131 ALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 189

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLAL 430
             +  ++ L+  G   ++ A+ G  PL  AA++  ++V +  ++ G       +     L
Sbjct: 190 NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL 249

Query: 431 TAATSSSQVEVAAYLLPH 448
             A      E+ A LL  
Sbjct: 250 HLAAQEGHAEMVALLLSK 267

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.8 bits (133), Expect = 4e-08
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 18/138 (13%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
            L++ G    N            A++ G  E+V +LL   A  N  +      L   +  
Sbjct: 230 SLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE 288

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLAL 430
             +   + L++ G   +A   +G  PL  A+  G +++V++ ++       +       L
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL 348

Query: 431 TAATSSSQVEVAAYLLPH 448
             A      ++   LL +
Sbjct: 349 HQAAQQGHTDIVTLLLKN 366

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
           LL+   A+  N             ++ G   +  +L++     ++        L  ASHY
Sbjct: 263 LLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 321

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLAL 430
             I  ++ L++     NA   LG  PL +AA++G   +V   +K G        D    L
Sbjct: 322 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 381

Query: 431 TAATSSSQVEVAAYLLPHV 449
             A     + V   L    
Sbjct: 382 AIAKRLGYISVTDVLKVVT 400

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.8 bits (107), Expect = 6e-05
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 372 ALGFASHYCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----R 422
            L  AS    +  ++ L++ G   N        PL  AA  G  +V ++ ++       +
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76

Query: 423 DMDLCLALTAATSSSQVEVAAYLLPH 448
             D    L  A       +   LL +
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLEN 102

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 54.7 bits (133), Expect = 6e-09
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
             +  G + VN+         + AS FG  E VR LL+  A  + L  + + AL  AS  
Sbjct: 20  EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG 79

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLAL 430
                +  L+E     N   + G  PL+ A     ++ V+  + RG             +
Sbjct: 80  GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM 139

Query: 431 TAATSSSQVEVAAYLLPH 448
             A +    +V   +  H
Sbjct: 140 DLAVALGYRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 11/116 (9%)

Query: 344 ASRFGSTELVRILLQI-AQR-NSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFL 398
            +  G  + ++  L+      N  D      L +AS + +I T+  L+E G   + +A  
Sbjct: 9   LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE 68

Query: 399 G--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAATSSSQVEVAAYLLPH 448
               L  A+  G   +V   ++R       D +    L  A   + V+    LL  
Sbjct: 69  RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 14/106 (13%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
            L+E GAD  +            AS  G T++V +LL+     N  D +    L +A   
Sbjct: 54  FLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG 112

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG 420
             +  +E L+  G      A  G  P+  A   G  +V Q      
Sbjct: 113 NHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 35/148 (23%), Positives = 53/148 (35%), Gaps = 15/148 (10%)

Query: 328 LLVEGGA-----DNVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCK 381
             V          +    FL A   G TE V  LL+  A  N  +VD   AL  A     
Sbjct: 26  PPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN 85

Query: 382 IGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTA 432
           +  ++ LVE G   N     G  PL  AA  G + + ++ + +G      + +    L  
Sbjct: 86  VDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

Query: 433 ATSSSQVEVAAYLLPHVPQHVLAALSIE 460
           A   +  E+    +      + AA   E
Sbjct: 146 AEEEAMEELLQNEVNRQGVDIEAARKEE 173

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.0 bits (105), Expect = 8e-05
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 7/104 (6%)

Query: 328 LLVEGGADNVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTME 386
             V     ++     E  R    +  + L                AL  A+       ++
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 387 CLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGCRDMD 425
            L++     N   + G  PL  AA  G  +  +  V+  C DM+
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC-DME 259

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.3 bits (132), Expect = 2e-08
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 17/138 (12%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
            L+  G  +VN          + A+ +   +LV++LL   +  N  D + ++ L +A+  
Sbjct: 95  YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS 154

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLAL 430
             +   E L+      +AV   G  PL  AA       V  F+ R      ++ +    L
Sbjct: 155 GCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214

Query: 431 TAATSSSQVEVAAYLLPH 448
             A+ +SQV  A  +   
Sbjct: 215 QCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 11/116 (9%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           A+  G  ++  +L+Q  A  ++   D    L  A+    +  ++ L++ G   +     G
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77

Query: 400 --PLMRAAERGCMQVVQWFVKRG-----CRDMDLCLALTAATSSSQVEVAAYLLPH 448
              L  AA++G  +VVQ+ +  G     C+D      +  AT    V++   LL  
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.9 bits (118), Expect = 1e-06
 Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 19/139 (13%)

Query: 328 LLVEGGADNVNQ-------CFLEASRFGSTELVRILLQIAQR--NSLDVDVDLALGFASH 378
            L++ GA  V+        C   A++ G  E+V+ LL   Q   N  D      + +A+ 
Sbjct: 62  YLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120

Query: 379 YCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLA 429
           Y  +  ++ L+ +G   N         L  AA  GC+ + +  +   C     ++     
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSP 180

Query: 430 LTAATSSSQVEVAAYLLPH 448
           L  A   ++ +     L  
Sbjct: 181 LHIAARENRYDCVVLFLSR 199

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.6 bits (104), Expect = 7e-05
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 14/106 (13%)

Query: 328 LLVEGGADNVNQ-------CFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
           LL+  G+D +N        C   A+  G  ++  ILL      +++++  D  L  A+  
Sbjct: 129 LLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE 187

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG 420
            +   +   +            G  PL  A+    +       K  
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 42.4 bits (101), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 372 ALGFASHYCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----R 422
            L  A+    +     LV+ G   +  +     PLM AAE   ++ V++ +K G     +
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73

Query: 423 DMDLCLALTAATSSSQVEVAAYLLPH 448
           D +    L  A      EV  YLL +
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSN 99

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.0 bits (131), Expect = 4e-08
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 333 GADNVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDL-ALGFASHYCKIGTMECLVE 390
            A   N   ++A +    +LV+ LL+  A  N  + +     L  A    +   +E L+ 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 391 EG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAATSSSQVEV 441
            G         G  P + AA  G +++++ F+ +G      D     A   A    +V+ 
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 442 AAYLLPH 448
             +L   
Sbjct: 121 LKFLYKR 127

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.5 bits (109), Expect = 3e-05
 Identities = 35/149 (23%), Positives = 53/149 (35%), Gaps = 29/149 (19%)

Query: 328 LLVEGGADNVNQCFLE--------ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASH 378
            L+EGGA NVN    E        A +    ++V +LL+  A       +       A+ 
Sbjct: 23  QLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI 81

Query: 379 YCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMDLCL- 428
              +  ++  + +G   N   F G    M AA  G ++ +++  KRG     R       
Sbjct: 82  AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 141

Query: 429 ---------ALTAATSSSQVEVAAYLLPH 448
                    AL  A     VEV   LL  
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDE 170

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 33/153 (21%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDL-------- 371
           L +  GAD VN+C       F+EA+ +G  + ++ L +  A  N      +         
Sbjct: 90  LFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG 148

Query: 372 --ALGFASHYCKIGTMECLVEEG----NAVAFLG--PLMRAAERG----CMQVVQWFVKR 419
             AL  A+    +  ++ L++E     NA   +G   L+ A           +    +  
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 420 G----CRDMDLCLALTAATSSSQVEVAAYLLPH 448
           G     R       L  A     + +   LL  
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.0 bits (131), Expect = 5e-08
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 17/137 (12%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
            L+  G   VN           EA   G    V+ILL+  AQ N +  D    L  A   
Sbjct: 77  NLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS 135

Query: 380 CKIGTMECLVEEG---NAVAFLG-PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALT 431
                +  L++ G      + L  P+  AA RG ++ V   +  G     +   L   L 
Sbjct: 136 GSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY 195

Query: 432 AATSSSQVEVAAYLLPH 448
            A  + Q      LL  
Sbjct: 196 LACENQQRACVKKLLES 212

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 9/115 (7%)

Query: 343 EASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFL 398
           EA+  G    +R L+      N +  D    L  A     +  ++ L++ G   N V   
Sbjct: 65  EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD 124

Query: 399 G--PLMRAAERGCMQVVQWFVKRGC---RDMDLCLALTAATSSSQVEVAAYLLPH 448
              PL  A   G    V   ++ G     + DL   +  A     VE    L+ +
Sbjct: 125 WHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAY 179

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 15/135 (11%)

Query: 328 LLVEGGAD-NVNQCFL----EASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCK 381
           LL++ GA             EA+R G  E V  L+      +     +   L  A    +
Sbjct: 143 LLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQ 202

Query: 382 IGTMECLVEEG---NAVAFLG-PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAA 433
              ++ L+E G   N       PL         ++    +  G     ++ +    +   
Sbjct: 203 RACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262

Query: 434 TSSSQVEVAAYLLPH 448
              S +    +L   
Sbjct: 263 PPESPLAQ-LFLERE 276

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 8/113 (7%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLG--- 399
            S          L+   +   S+D       G      +      L+        +    
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 400 PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAATSSSQVEVAAYLLPH 448
           P+  AA  G    ++  + +G        D    L  A     +     LL H
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 114

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 77/611 (12%), Positives = 165/611 (27%), Gaps = 188/611 (30%)

Query: 7   FVSKNDNMY---LEDGIDHEEPFCAEMEADENETGTPANEVHGFTSEGSE--GSNVVF-- 59
            +SK + M    +E+ +     F   M   + E   P+     +  +       N VF  
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 60  ---SREAPL---------ISKESRIS----SGC--SCSAKN-LKSRRIIATDSDFATE-- 98
              SR  P          +     +      G   +  A +   S ++         +  
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ---CKMDFKIF 185

Query: 99  --KIGHEKK--------------LSKSERVELGKMFQSAMSSHDWELAESLILLADPHTL 142
              + +                 +  +            +  H  +     +L + P+  
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-- 243

Query: 143 NDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDF-------TRAALRTSFLASCVS 195
            + L + L ++                 K     A++        TR    T FL++  +
Sbjct: 244 ENCLLV-LLNVQ--------------NAKAWN--AFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 196 AC-----QSRTMSLQDTVTVMAQRLNERLQE-----CNGDEVLKAEAGAKVQKFTE-WAL 244
                   S T++  +  +++ + L+ R Q+        +    +     ++     W  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-- 344

Query: 245 RCIGFHSRCNDNCDAVSHSSAVEIQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTL 304
                     DN             +      T ++ + N L   ++ + FD     L++
Sbjct: 345 ----------DNWK----------HVNCDKLTTIIESSLNVLEPAEYRKMFDR----LSV 380

Query: 305 FSSSFDPGWASGISATVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNS 364
           F  S        I   +    L L+      +     +        +L +  L + ++  
Sbjct: 381 FPPSAH------IPTIL----LSLIWFDVIKSDVMVVVN-------KLHKYSL-VEKQPK 422

Query: 365 LDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDM 424
                +  +   S Y +   ++  +E             A  R    +V  +      D 
Sbjct: 423 -----ESTISIPSIYLE---LKVKLEN----------EYALHR---SIVDHYNIPKTFDS 461

Query: 425 DLCLALTAATSSSQVEVAAYLLPHVPQHVLAA-------------LSIEILKAAGERSGG 471
           D  +            +  Y   H+  H+                L    L+        
Sbjct: 462 DDLIPP---------YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 472 SLDGVAFLLHSDFLGDPAATYAVADSIARSDD--EGVAPDLKVFLREHWSEAAFLDGLKQ 529
           + +    +L  + L      Y     I  +D   E +   +  FL +   E   +     
Sbjct: 513 AWNASGSIL--NTLQQ-LKFY--KPYICDNDPKYERLVNAILDFLPKI--EENLICS--- 562

Query: 530 GDVHYMNLLRI 540
               Y +LLRI
Sbjct: 563 ---KYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 4e-06
 Identities = 87/543 (16%), Positives = 147/543 (27%), Gaps = 153/543 (28%)

Query: 117 MFQSAMSSHDWELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANG 176
           M +S +S  + +      ++     ++  L +     W L ++QE               
Sbjct: 41  MPKSILSKEEID-----HIIMSKDAVSGTLRL----FWTLLSKQE-------------EM 78

Query: 177 AYDFTRAALRT--SFLASCVSA-CQSRTMSLQDTVTVMAQRLNERLQECNGDEVLK---- 229
              F    LR    FL S +    +  +M    T   + QR  +RL   N ++V      
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSM---MTRMYIEQR--DRL--YNDNQVFAKYNV 131

Query: 230 --AEAGAKVQKFTEWALRC-----IGFH--SRCNDNCDAVSHSSAVEIQLQLSAFKTF-L 279
              +      K  +  L       +             A+    + ++Q ++  FK F L
Sbjct: 132 SRLQ---PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKIFWL 187

Query: 280 DLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLGLLVEGGADNVNQ 339
           +L  N  + +   E        L       DP W S                  + N+  
Sbjct: 188 NL-KNCNSPETVLE-------MLQKLLYQIDPNWTSRSD--------------HSSNIKL 225

Query: 340 CFLEASRFGSTELVRILLQIAQRNSL----DV-DVDLALGFASHYCKI-------GTMEC 387
                      EL R+L      N L    +V +      F    CKI          + 
Sbjct: 226 RIHSI----QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDF 280

Query: 388 LVEEGNAVAFLGPLMRAAERGCMQVVQWFVKR-GCRDMDL----C------LALTAATSS 436
           L         L            +V    +K   CR  DL           L++ A +  
Sbjct: 281 LSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 437 SQVEVAAYLLPHV---PQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGD---PAA 490
             +        HV       +   S+ +L+ A  R         F   S F      P  
Sbjct: 339 DGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRK-------MFDRLSVFPPSAHIPTI 390

Query: 491 TYAV--ADSIARSDDEGVAPDL--KVFLREHWSEAAF------LDGLKQGD----VH--- 533
             ++   D I +SD   V   L     + +   E+        L+   + +    +H   
Sbjct: 391 LLSLIWFDVI-KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 534 ---YMNLLRILKWGESPICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQRLRGQLVEAV 590
              Y            P  L            Y   +       GH L      + +   
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQ----------YFYSHI------GHHLKNIEHPERMTLF 493

Query: 591 RRL 593
           R +
Sbjct: 494 RMV 496

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 50.0 bits (121), Expect = 9e-08
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 10/115 (8%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           A+R G  E+V++LL+  A  N+ D +    L  A+    +  ++ L+E G   NA    G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 400 --PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAATSSSQVEVAAYLLPH 448
             PL  AA  G ++VV+  ++ G     +D +    L  A  +  +EV   LL  
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 14/106 (13%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
           LL+E GAD VN            A+R G  E+V++LL+  A  N+ D +    L  A+  
Sbjct: 20  LLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG 420
             +  ++ L+E G   NA    G  PL  AA  G ++VV+  ++ G
Sbjct: 79  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 18/139 (12%)

Query: 328 LLVEGGAD-NVNQC----FLEASRFGSTELVRILL-QIAQRNSLDVDVDLALGFASHYCK 381
             +  G     N       L++S  G  +LV+ ++ ++   +  + +   AL  A     
Sbjct: 23  ERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH 82

Query: 382 IGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC-------RDMDLCLA 429
              ++ LV+ G   NA    G  PL  AA    +QV ++ V+ G         DM     
Sbjct: 83  TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAAD 142

Query: 430 LTAATSSSQVEVAAYLLPH 448
                     + + +L   
Sbjct: 143 KCEEMEEGYTQCSQFLYGV 161

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 9/114 (7%)

Query: 344 ASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG- 399
             R    +     +    R   +      L  +S   +   ++ ++ E    +     G 
Sbjct: 12  GKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGI 71

Query: 400 -PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLLPH 448
             L  A   G  ++V++ V+ G      D D    L  A S + V+V  +L+  
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 21/135 (15%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
            ++    D  +            A   G TE+V+ L+Q     N+ D D    L  A+  
Sbjct: 55  RIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC 113

Query: 380 CKIGTMECLVEEG---NAVAFLG-----PLMRAAERGCMQVVQWFVKRGC----RDMDLC 427
             +   + LVE G    A+ +             E G  Q  Q+           +  + 
Sbjct: 114 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVI 173

Query: 428 LALTAATSSSQVEVA 442
            AL      +  E+ 
Sbjct: 174 YALWDYEPQNDDELP 188

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
            +  G    +   ++     N  D +    L +A+ + +I  +E L++ G     +    
Sbjct: 10  LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR 69

Query: 400 --PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAATSSSQVEVAAYLLPH 448
              L  A  +G   +V+  +  G      D +    L  A   + V+    LL  
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 18/138 (13%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
             +E     +N          + A+  G   +V  LLQ  A    L    + AL  A   
Sbjct: 21  TRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK 79

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLAL 430
                ++ L++ G   N   + G  PL+ A     ++ V+  ++ G            ++
Sbjct: 80  GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 139

Query: 431 TAATSSSQVEVAAYLLPH 448
             A +     V   +  H
Sbjct: 140 DLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.5 bits (104), Expect = 3e-05
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 14/106 (13%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
            L++ GAD               A   G T++V++LL      N  D +    L +A H 
Sbjct: 54  FLLQNGAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG 112

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG 420
             +  ++ L+E G         G   +  A   G   V Q      
Sbjct: 113 NHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 26/137 (18%), Positives = 41/137 (29%), Gaps = 24/137 (17%)

Query: 332 GGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFAS--HYCK 381
           G    ++            A+  G  E VR LL+  A  N+L+      +          
Sbjct: 1   GSPG-IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS--- 56

Query: 382 IGTMECLVEEG---NAVAFLG---PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALT 431
               E L+  G   N         P+  AA  G +  +    + G      D    L + 
Sbjct: 57  AQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVD 116

Query: 432 AATSSSQVEVAAYLLPH 448
            A      ++A YL   
Sbjct: 117 LAEEQGHRDIARYLHAA 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 333 GADNVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEE 391
           G+D + +  LEA+R G  + VRIL+   A  N+ D      L  A+ +  +  +E L++ 
Sbjct: 11  GSD-LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 392 G---NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAATSSSQVEVA 442
           G   NAV  +G  PL  AA  G +++ +  +K G     +D     A   +  +   ++A
Sbjct: 70  GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLA 129

Query: 443 AYLLPH 448
             L   
Sbjct: 130 EILQKL 135

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.7 bits (120), Expect = 3e-07
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 17/133 (12%)

Query: 333 GAD-------NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGT 384
           G+        ++ +  LEA+R G  + VRIL+   A  N+ D      L  A+    +  
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62

Query: 385 MECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATS 435
           +E L++ G   NAV   G  PL  AA  G +++V+  +K G      DM+    L  A  
Sbjct: 63  VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122

Query: 436 SSQVEVAAYLLPH 448
              +E+   LL +
Sbjct: 123 FGHLEIVEVLLKN 135

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 45.8 bits (110), Expect = 6e-06
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 18/138 (13%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
           +L+  GAD VN            A+  G  E+V +LL+  A  N++D      L  A+ +
Sbjct: 32  ILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLAL 430
             +  +E L++ G   NA    G  PL  AA  G +++V+  +K G     +D     A 
Sbjct: 91  GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150

Query: 431 TAATSSSQVEVAAYLLPH 448
             +  +   ++A  L   
Sbjct: 151 DISIDNGNEDLAEILQKL 168

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 17/138 (12%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
           +L+   A +++          + A+R     ++  L+   A  N++D     AL +A+  
Sbjct: 76  ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLAL 430
             +     L++ G   +        PL  AA  G  +  +  +         D    L  
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 195

Query: 431 TAATSSSQVEVAAYLLPH 448
             A      ++   L  +
Sbjct: 196 DIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 46.6 bits (112), Expect = 7e-06
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 18/139 (12%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
             +  GA   NQ           A+R+  ++  + LL+  A  N  D      L  A   
Sbjct: 9   DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 68

Query: 380 CKIGTMECLVEEG----NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLA 429
              G  + L+       +A    G  PL+ AA      +++  +         D     A
Sbjct: 69  DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128

Query: 430 LTAATSSSQVEVAAYLLPH 448
           L  A + + V+ A  LL +
Sbjct: 129 LHWAAAVNNVDAAVVLLKN 147

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.7 bits (125), Expect = 3e-07
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 18/146 (12%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
           LL      N +            A+ +    +V++LLQ  A  ++ D    + L  A  Y
Sbjct: 43  LLTPLNV-NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY 101

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLAL 430
                 E L++ G   NA+      PL  AA +  ++V    +  G      +     A+
Sbjct: 102 GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAV 161

Query: 431 TAATSSSQVEVAAYLLPHVPQHVLAA 456
             A +    E   Y          A 
Sbjct: 162 DMAPTPELRERLTYEFKGHSLLQAAR 187

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 27/143 (18%)

Query: 328 LLVEGGADNVNQC------FLEASRFGSTELVRILLQIAQRNSLDVDVDL-------ALG 374
            L +  A  V          LEA+R G+ E +  LL       L+V+           L 
Sbjct: 9   DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALL-----TPLNVNCHASDGRKSTPLH 63

Query: 375 FASHYCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMD 425
            A+ Y ++  ++ L++ G   +A    G  PL  A   G  +V +  +K G      D+ 
Sbjct: 64  LAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123

Query: 426 LCLALTAATSSSQVEVAAYLLPH 448
               L  A S ++VEV + LL H
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSH 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.1 bits (121), Expect = 6e-07
 Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAF-L 398
           A+++G  E  R L++        D +    L +A+   +I  ++  + +G   + +   L
Sbjct: 16  ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75

Query: 399 G--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAATSSSQVEVAAYLLPH 448
              PL  A  +G + +V   +K G      D + C  +  A       + AYL+  
Sbjct: 76  NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 20/140 (14%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDL-ALGFASH 378
            LVE G D V Q           A+     +LV+  +   A  + L  D++   L +A+ 
Sbjct: 27  ELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR 85

Query: 379 YCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLA 429
              +  +  L++ G   + +   G   +  AA+ G   +V + + +G      D +    
Sbjct: 86  QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145

Query: 430 L-TAATSSSQVEVAAYLLPH 448
           L  AA  +  V+    LL  
Sbjct: 146 LMWAAYRTHSVDPTRLLLTF 165

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 20/140 (14%)

Query: 328 LLVEGGADNVNQ-------CFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
            L++ GAD  +        C   A++FG T +V  L+      + +D +    L +A++ 
Sbjct: 94  QLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR 152

Query: 380 C-KIGTMECLVEEG---NAVAFLG---PLMRAAERGCMQVVQWFVKRG----CRDMDLCL 428
              +     L+      N          L  A   G   V+   ++ G     +++    
Sbjct: 153 THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES 212

Query: 429 ALTAATSSSQVEVAAYLLPH 448
           AL  A     V +  +L   
Sbjct: 213 ALDLAKQRKNVWMINHLQEA 232

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 344 ASRFGSTELVRILL-QIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEG----NAVAFL 398
           A++ G+   +R  L      N LD     AL +A H      +E L  +     N    L
Sbjct: 80  AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL 139

Query: 399 G--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAATSSSQVEVAAYLLPH 448
           G   L  AA +G   +VQ  + +G     R+++  LA   AT+++   +       
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 5/110 (4%)

Query: 344 ASRFGSTELVRILL-QIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLM 402
           A           L  +      +    D      +   + G +        A +   PL 
Sbjct: 19  ALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLH 78

Query: 403 RAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLLPH 448
            AA+RG +  ++  +         D     AL  A      ++   L   
Sbjct: 79  EAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.0 bits (113), Expect = 1e-06
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           AS  G    V  LLQ  +  N  D      L  A ++  +  +E L++     N   +  
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76

Query: 400 --PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLLPH 448
             PL  AA+ G + +V+  +  G      ++     +      S   +      +
Sbjct: 77  DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 12/116 (10%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           A+  G  E VR LL+  A  N+ +      +            E L+  G   N      
Sbjct: 19  AAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPAT 77

Query: 400 ---PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAATSSSQVEVAAYLLPH 448
              P+  AA  G +  +    + G     RD    L +  A      +VA YL   
Sbjct: 78  LTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.8 bits (115), Expect = 3e-06
 Identities = 28/146 (19%), Positives = 45/146 (30%), Gaps = 32/146 (21%)

Query: 328 LLVEGGADNVNQCFLE----------ASRFGSTELVRILLQIAQRNSLDVDVDL------ 371
            L+     NVN               A   G+ E+V+ L        L  D++       
Sbjct: 54  FLLSKME-NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD----RPLKPDLNKITNQGV 108

Query: 372 -ALGFASHYCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC---- 421
             L  A         + L+E G            PL RAA  G +++++     G     
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168

Query: 422 -RDMDLCLALTAATSSSQVEVAAYLL 446
            +D      L  A +    + A  L+
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLV 194

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 23/143 (16%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQ----IAQRNSLDVDVDLALGFA 376
           LL    +  + Q           +  F + E+   LL     +   +  D         A
Sbjct: 21  LLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79

Query: 377 SHYCKIGTMECLVEEG-----NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMD 425
                +  ++ L +       N +   G   L  A  +   +V Q+ ++ G     +D  
Sbjct: 80  CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF 139

Query: 426 LCLALTAATSSSQVEVAAYLLPH 448
             + L  A S   +++   L   
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGL 162

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 15/139 (10%), Positives = 42/139 (30%), Gaps = 19/139 (13%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVD-VDLALGFASH 378
           +L+  G D  +Q           A   G+ + V++ ++   +           +   A  
Sbjct: 80  ILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM 138

Query: 379 YCKIGTMECLVEEGNAVAFLG----PLMRAAERGCMQVVQWFVKRGC----RDMDLC-LA 429
              +  +   + E  +   L      +    + G + ++   +         +  L    
Sbjct: 139 LNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPD 198

Query: 430 LTAATSSSQVEVAAYLLPH 448
           +  A  +  +E+   L  +
Sbjct: 199 IKLAIDNKDIEMLQALFKY 217

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 7/114 (6%)

Query: 342 LEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFL 398
           L       ++ ++  L        DV    A  +A     +  +  L+  G   N +   
Sbjct: 4   LSRINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE 63

Query: 399 GPLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLLPH 448
            PL +AA     ++V+  +  G      D     AL  A  S  ++     +  
Sbjct: 64  FPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 117

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 18/135 (13%)

Query: 328 LLVEGGADNVNQC--------FLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHY 379
           L V+     +           F  A       +V   L           +   +      
Sbjct: 113 LFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKN 171

Query: 380 CKIGTMECLVEEG---NAVAFLG---PLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAA 433
             +  M  L++     N    L     +  A +   ++++Q   K      ++  A    
Sbjct: 172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI---NIYSANLEN 228

Query: 434 TSSSQVEVAAYLLPH 448
                 E+A  ++  
Sbjct: 229 VLLDDAEIAKMIIEK 243

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 24/120 (20%), Positives = 39/120 (32%), Gaps = 21/120 (17%)

Query: 344 ASRFGSTELVRILLQIAQRNSLDVDVDL-----ALGFASHYCKIGTMECLVEEG---NAV 395
           A    +  LV  LL      +     +L      L  A+       ++ L+  G   +  
Sbjct: 38  AIADNNVRLVCTLL------NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQF 91

Query: 396 AFLG--PLMRAAERGCMQVVQWFVKRG----CRDMD-LCLALTAATSSSQVEVAAYLLPH 448
              G   L  A + G MQ V+ FVK+              +   A   + V + +Y L  
Sbjct: 92  DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE 151

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 13/134 (9%)

Query: 328 LLVEGGADNVNQ---CFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGT 384
                 AD V++    +  A+R    + +  LL+    +++D +   AL F +       
Sbjct: 32  PSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKC 91

Query: 385 MECLVEEG---NAVAFLG---PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAAT 434
           +  L E G   +     G    L  AA     +VV+  V+ G      D     AL  A 
Sbjct: 92  VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151

Query: 435 SSSQVEVAAYLLPH 448
              +       +  
Sbjct: 152 EILKTTPKGNPMQF 165

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 45.9 bits (110), Expect = 6e-06
 Identities = 28/146 (19%), Positives = 45/146 (30%), Gaps = 34/146 (23%)

Query: 328 LLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDV---------DVDL------- 371
           LL        +      +RFG T      LQ+    S  +           ++       
Sbjct: 21  LLHRELVH-PD----ALNRFGKT-----ALQVMMFGSTAIALELLKQGASPNVQDTSGTS 70

Query: 372 ALGFASHYCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG---CRD 423
            +  A+    + T++ LVE G   N     G  P+  A + G   VV +         RD
Sbjct: 71  PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRD 130

Query: 424 MDLCLALTAATSSSQVEVAAYLLPHV 449
                 L  A      ++   L  H+
Sbjct: 131 ARGLTPLELALQRGAQDLVDILQGHM 156

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 47.1 bits (113), Expect = 6e-06
 Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 17/138 (12%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
           +L+   A +++          + A+R     ++  L+   A  N++D     AL +A+  
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLAL 430
             +     L++ G   +        PL  AA  G  +  +  +         D    L  
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 227

Query: 431 TAATSSSQVEVAAYLLPH 448
             A      ++   L   
Sbjct: 228 DIAQERMHHDIVRLLDLE 245

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 46.3 bits (111), Expect = 6e-06
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           A++  + ++  IL     Q + +D + +  L  A H   I   + L++ G   N    + 
Sbjct: 13  ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS 72

Query: 400 --PLMRAAERGCMQVVQWFVKRGCRDMDL-----CLALTAATSSSQVEVAAYLLPH 448
             P + A  +G  +++ + +K    D++        AL  A     ++    LL  
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 46.3 bits (111), Expect = 6e-06
 Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 25/145 (17%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
           +L +     V++           A      E+ + L+   A  N  +   D    +A   
Sbjct: 24  ILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82

Query: 380 CKIGTMECLVEEG----NAVAFLG--PLMRAAERGCMQVVQWFVKRGCRDMD-------- 425
            +   +  +++      N     G   L+ AAE+G +  V+  ++ G  D+D        
Sbjct: 83  GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT 142

Query: 426 -LCLALTAATSSS-QVEVAAYLLPH 448
            L  A+     +    ++   L+ +
Sbjct: 143 ALIEAVGLREGNQLYQDIVKLLMEN 167

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 25/145 (17%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQIAQR--NSLDVDVDLALGFASH 378
            L++ GAD +N         +L A   G TE++  +L+ A    N  +     AL  A+ 
Sbjct: 57  ALIDRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115

Query: 379 YCKIGTMECLVEEG----NAVAFLG--PLMRAA-----ERGCMQVVQWFVKRG----CRD 423
              I  ++ L+E+G    +     G   L+ A       +    +V+  ++ G     +D
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD 175

Query: 424 MDLCLALTAATSSSQVEVAAYLLPH 448
                A+  A      E++  L  +
Sbjct: 176 NSGRTAMDYANQKGYTEISKILAQY 200

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 45.1 bits (108), Expect = 8e-06
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 336 NVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDL----ALGFASHYCKIGTMECLVEE 391
           ++ +  LEA+R G  + VRIL+     N      D      L  A+ Y    T E L+  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMA----NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 392 G---NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAATSSSQVEVA 442
           G   +A   +   PL  AA  G   +V+  +K G     +DM    AL  AT  +  EV 
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 443 AYLLPH 448
             L+ +
Sbjct: 117 ELLIKY 122

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 10/112 (8%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           A+++G      +LL+    R++        L  A+       +E L++ G   NA   L 
Sbjct: 41  AAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK 100

Query: 400 --PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYL 445
              L  A E    +VV+  +K G     +      A   +  +   ++A  L
Sbjct: 101 MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 46.7 bits (112), Expect = 8e-06
 Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDL-ALGFASHYCKIGTMECLVEEG---NAVAFL 398
           A      E V++LL+  A  +++D+      L  A     +  ++ L++ G   NA  + 
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182

Query: 399 G--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLLPH 448
           G   L  A+ RG + +V+  V+ G     ++      L  A S   +++       
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.6 bits (104), Expect = 7e-05
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 18/123 (14%)

Query: 344 ASRFGSTELVRILLQIAQRNSLDVDV-----DLALGFASHYCKIGTMECLVEEG---NAV 395
           A   G+   V  L+ + Q+   ++D+        L  A        +  LV  G    A+
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75

Query: 396 AFLG--PLMRAAERGCMQVVQWFVKRG--------CRDMDLCLALTAATSSSQVEVAAYL 445
              G      A E      ++  +            R+ D   AL  A ++   E    L
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135

Query: 446 LPH 448
           L  
Sbjct: 136 LER 138

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 23/150 (15%)

Query: 321 VIQGLLGLLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLA 372
            +  L+ L  +GG   ++            A       +VR+L+   A   +LD     A
Sbjct: 24  AVHRLVNLFQQGGR-ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82

Query: 373 LGFASHYCKIGTMECLVEEG-------NAVAFLG--PLMRAAERGCMQVVQWFVKRGC-- 421
              A  +     +  L++          A  + G   L  A    C + VQ  ++RG   
Sbjct: 83  AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI 142

Query: 422 --RDM-DLCLALTAATSSSQVEVAAYLLPH 448
              D+      L  A  ++ + +   LL H
Sbjct: 143 DAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 44.1 bits (105), Expect = 8e-06
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 15/113 (13%)

Query: 344 ASRFGSTELVRILLQIAQRNSLDVDVDL--ALGFASHYCKIGTMECLVEEG---NAVAFL 398
            S          L+         +  DL   L  A+   +   +  L+  G    A    
Sbjct: 1   GSSHHHHHHSSGLVP----RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 399 G--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAATSSSQVEVAAYL 445
           G  PL  AA  G ++VV+  ++ G     +D     A   +  +   ++A  L
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 13/134 (9%)

Query: 328 LLVEGGADNVNQ---CFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGT 384
                 AD V++    +  A+R    + +  LL+    +++D +   AL F +       
Sbjct: 33  PSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKC 92

Query: 385 MECLVEEG---NAVAFLG---PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAAT 434
           +  L E G   +     G    L  AA     +VV+  V+ G      D     AL  A 
Sbjct: 93  VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152

Query: 435 SSSQVEVAAYLLPH 448
              +       +  
Sbjct: 153 EILKTTPKGNPMQF 166

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           A      EL   +L   +     D D   AL +A        +E L++ G   N     G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73

Query: 400 --PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLLPH 448
             PL  AA  G  ++V+  + +G      + + C  L  A S ++ E+A  LL  
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 17/138 (12%)

Query: 328 LLVEGGADNVNQCFLE-------ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
           L ++   +++NQ           A R G + +V +L+   A+ N ++   D  L  A+ +
Sbjct: 23  LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLAL 430
                ++ L++     NAV   G  PL  A   G  QV +  V  G      +    + +
Sbjct: 83  GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142

Query: 431 TAATSSSQVEVAAYLLPH 448
             A +  +  +       
Sbjct: 143 DKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.8 bits (102), Expect = 9e-05
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 11/116 (9%)

Query: 344 ASRFGSTELVRILLQI--AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFL 398
             R G+   VR+ L       N  D      L +A    +   +E L+  G   N +   
Sbjct: 12  QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71

Query: 399 G--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLLPH 448
              PL  AA  G   +VQ  ++        +    + L  A    Q +VA  L+ +
Sbjct: 72  DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 21/156 (13%), Positives = 44/156 (28%), Gaps = 36/156 (23%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI------AQRNSLDVDVDLALG 374
           +LV+ GA              + A  F + E + +++         + +  +   +  L 
Sbjct: 158 ILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH 216

Query: 375 FASHYCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG--------- 420
           +A            VE G   N        PL  +     + + +  +++          
Sbjct: 217 WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP 276

Query: 421 --------CRDMDLCLALTAATSSSQVEVAAYLLPH 448
                      +     + AA   S+ EV   L   
Sbjct: 277 YHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 17/122 (13%)

Query: 344 ASRFG--STELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-------- 392
               G    E+++IL+Q+ A   + D   +  L  A  +     ++ +++          
Sbjct: 145 CVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL 204

Query: 393 NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLL 446
           +     G   L  A       V   FV+ G      D +  + L  +  ++ V +   LL
Sbjct: 205 DYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELL 264

Query: 447 PH 448
             
Sbjct: 265 QK 266

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           A+R G T+ VR L++        +     AL  A  +  + T + L   G   +      
Sbjct: 27  AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQK 86

Query: 400 PLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVA 442
           P+  A       +V   V+         +  +      + EV 
Sbjct: 87  PIHLAVMANKTDLVVALVEGA--KERGQMPESLLNECDEREVN 127

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 43.5 bits (104), Expect = 1e-05
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           A + G  + V+  +      N         L +A+   ++  +E L+ +G   NA     
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73

Query: 400 --PLMRAAERGCMQVVQWFVKRG 420
             PL+ A   G +  V+  + +G
Sbjct: 74  ITPLLSAVYEGHVSCVKLLLSKG 96

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 39.3 bits (93), Expect = 6e-04
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 14/100 (14%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
             V  G D VN+           A+  G  E++  LL   A  N+ D      L  A + 
Sbjct: 25  DYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQ 414
             +  ++ L+ +G         G         +    ++Q
Sbjct: 84  GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           A++ G  E V+ LL   A  N+   D +  L  A+       ++ L+ +G   NA +  G
Sbjct: 16  AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75

Query: 400 --PLMRAAERGCMQVVQWFVKRG 420
             P   A + G  ++V+    +G
Sbjct: 76  NTPEHLAKKNGHHEIVKLLDAKG 98

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 17/109 (15%)

Query: 328 LLVEGGADNVNQC----------FLEASRFGSTELVRILL-QIAQRNSLDVDVDLALGFA 376
            ++     +  +            L+A+  G  E+V+  + ++   +  + +   AL  A
Sbjct: 3   SVLRKAG-SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 377 SHYCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG 420
                   ++ L+  G   N+    G  PL  AA      +    V+ G
Sbjct: 62  ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.3 bits (101), Expect = 2e-05
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           A+R G  E+V++LL+  A  N+ D +    L  A+    +  ++ L+E G   NA    G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 400 --PLMRAAERGCMQVVQWFVKRG 420
             PL  AA  G ++VV+  ++ G
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAG 91

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 16/131 (12%)

Query: 333 GADNVNQ----CFLEASRFGSTELVRILLQIAQRNSLDVDVDL--ALGFASHYCKIGTME 386
           GA   N       LEA++ G  E V+ L  +   N  D++      L FA+ Y ++  +E
Sbjct: 1   GA-MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE 59

Query: 387 CLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLALTAATSSS 437
            L++ G   +A    G  PL  A   G  +V +  VK G      D+     L  A +  
Sbjct: 60  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 119

Query: 438 QVEVAAYLLPH 448
           + E+   LL H
Sbjct: 120 KYEICKLLLQH 130

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.8 bits (97), Expect = 3e-04
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 18/138 (13%)

Query: 328 LLVEGGADNVNQCFLE-------ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
            L    + N              A+ +    +V  LLQ  A  ++ D    + L  A  Y
Sbjct: 26  KLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY 85

Query: 380 CKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDLCLAL 430
                 E LV+ G   N        PL  AA +G  ++ +  ++ G     ++ D    L
Sbjct: 86  GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145

Query: 431 TAATSSSQVEVAAYLLPH 448
                    ++   L   
Sbjct: 146 DLVKDGDT-DIQDLLRGD 162

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           A   G    +  L++   +    D++   AL +A    ++G  E L+ +G   N   F G
Sbjct: 42  ACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101

Query: 400 --PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLLPH 448
             PLM +   G  ++  + ++ G     R+++    L  A+   + E+   LL  
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.5 bits (96), Expect = 6e-04
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 10/115 (8%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           A +     +   LL   +  N+ D      L ++  +        L+E G   N     G
Sbjct: 75  AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134

Query: 400 --PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLLPH 448
             PL+ A++ G  ++V+  ++ G     RD+    A  +A    + EV       
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.9 bits (105), Expect = 3e-05
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 43/148 (29%)

Query: 344 ASRFGSTELVRIL-----------------LQIAQRNSLDV---------DVDL------ 371
           A+  G  E +  L                 LQ+ +  + ++         + DL      
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGF 71

Query: 372 -ALGFASHYCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC---- 421
             +  A+    + T++ L+E     N     G  PL  AA+ G ++VV++ VK       
Sbjct: 72  AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131

Query: 422 -RDMDLCLALTAATSSSQVEVAAYLLPH 448
            R+     A   A    + EV + +  +
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 39.7 bits (94), Expect = 8e-04
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 15/107 (14%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHY 379
            L+  GA N +           +A+R G  + ++ LL+  A  N  D + +L L  A+  
Sbjct: 55  RLLLRGA-NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113

Query: 380 CKIGTMECLVEEG----NAVAFLG--PLMRAAERGCMQVVQWFVKRG 420
             +  +E LV+            G      A   G  +VV      G
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 22/133 (16%), Positives = 37/133 (27%), Gaps = 19/133 (14%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQI-AQRNSLDVDVDL-ALGFASH 378
              +     +             A      E+VR+L    A  N  +       L  A  
Sbjct: 143 RDEDWRL-QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE 201

Query: 379 YCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG----CRDMDLCLA 429
                 +E L++ G    A  + G  PL  A  R    + +     G        D    
Sbjct: 202 AQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261

Query: 430 LTAATSSSQVEVA 442
            +++ S S  +  
Sbjct: 262 CSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 25/153 (16%), Positives = 37/153 (24%), Gaps = 33/153 (21%)

Query: 328 LLVEGGADNVNQC-------FLEASRFGSTELVRILLQ-----------IAQRNSLDVDV 369
            L   GA  V             A R  +     +LLQ                S D   
Sbjct: 63  KLYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 370 DLALGFASHYCKIG----TMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG 420
           D +   A+   +            +      A  + G  PL  A      ++V+     G
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 421 ----CRDMDLCL-ALTAATSSSQVEVAAYLLPH 448
                 +       L  A  +    V   LL  
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 16/132 (12%), Positives = 27/132 (20%), Gaps = 27/132 (20%)

Query: 344 ASRFGSTELVRILLQ----IAQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVA 396
           A        +  LL         +  +     AL  A+   +  T+E L   G       
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 397 FLG--PLMRAAERGCMQVVQWFVKRG------------------CRDMDLCLALTAATSS 436
             G   L  A            ++                      D     A   +  +
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 437 SQVEVAAYLLPH 448
            + E        
Sbjct: 136 PENEEEPRDEDW 147

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 11/118 (9%)

Query: 342 LEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAF 397
           +++      E          Q  + + D    L  A  +     +  L + G   N    
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 398 LG---PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLLPH 448
                PL  A E     V++  +K G     R       L +A       +A  L  H
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 31/118 (26%)

Query: 328 LLVEGGADNVNQCFLE------------ASRFGSTELVRILLQIAQRNSLDVDVDL---- 371
           +L +          L+            AS  G   +V +L+      SL  DV+     
Sbjct: 96  VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV------SLGADVNAQEPC 149

Query: 372 ----ALGFASHYCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG 420
               AL  A        +  L++ G   N V + G  P      R   ++ Q   +  
Sbjct: 150 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 23/115 (20%)

Query: 328 LLVEGGADNVNQCFLE---------------ASRFGSTELVRILLQI--AQRNSLDVDVD 370
           LLVE GA  V+                    A++  +  +V+ L+    + ++  D D  
Sbjct: 256 LLVEKGA-KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK 314

Query: 371 LALGFASHYCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRG 420
             +  A+   +I  +  L+++G    AV          A       +V  F +  
Sbjct: 315 TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 21/149 (14%), Positives = 42/149 (28%), Gaps = 30/149 (20%)

Query: 328 LLVEGGA-----DNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDL----ALGFASH 378
                       +  +   L     GS  +   + +     S+++         L + + 
Sbjct: 79  FNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITR----ESVNIIDPRHNRTVLHWIAS 134

Query: 379 YCKIGTMECLVEEG-----------NAVAFLG--PLMRAAERGCMQVVQWFVKRG----C 421
                  E L+              NA+      PLM A      ++V + +K G     
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI 194

Query: 422 RDMDLCLALTAATSSSQVEVAAYLLPHVP 450
            +     AL  A ++    +  Y+L    
Sbjct: 195 YNKSERSALHQAAANRDFGMMVYMLNSTK 223

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 27/148 (18%)

Query: 322 IQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCK 381
           ++GLL  L+      +          G T      L  A  N      D          K
Sbjct: 21  LEGLLSFLLTHKK-RLTDEEFREPSTGKT-----CLPKALLNLSAGRNDTIPILLDIAEK 74

Query: 382 IGTMECLV-EEGNAVAFLG--PLMRAAERGCMQVVQWFVKRGC----RDMDL-------- 426
            G M   +      V + G   L  A ER C   V+  V++G     +            
Sbjct: 75  TGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEG 134

Query: 427 ------CLALTAATSSSQVEVAAYLLPH 448
                  L L+ A  ++Q  +  YL  +
Sbjct: 135 GYFYFGELPLSLAACTNQPHIVHYLTEN 162

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 23/179 (12%), Positives = 45/179 (25%), Gaps = 27/179 (15%)

Query: 321 VIQGLLGLLVEGGADNVNQCFLEASRFGST---ELVRILLQI-AQRNSLDVDVDLALGFA 376
             + L     + G  +       A+  G +   + + +LL        +  +   A   A
Sbjct: 77  NAKQLWSDAHKKGIKS-EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA 135

Query: 377 SHYCKIGTMECLVEEGNAVAFLG-------PLMRAAERGCMQVVQWFVKRGC-------R 422
           +    +  +  L E                    AAE G + V+    +          +
Sbjct: 136 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 195

Query: 423 DMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLH 481
             +      AA       V  +LL          L+   +        G      F+  
Sbjct: 196 AENYYAFRWAAVGRGHHNVINFLLDCP-----VMLAYAEIHEF---EYGEKYVNPFIAR 246

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	629
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.92
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.92
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.92
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.91
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.91
2rfa_A	232	Transient receptor potential cation channel subfa	99.91
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.91
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.91
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.91
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.91
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.91
2pnn_A	273	Transient receptor potential cation channel subfa	99.9
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.9
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.9
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.9
2rfa_A	232	Transient receptor potential cation channel subfa	99.9
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.9
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.9
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.9
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.9
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.9
2etb_A	256	Transient receptor potential cation channel subfam	99.9
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.9
2etb_A	256	Transient receptor potential cation channel subfam	99.9
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.9
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.9
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.9
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.89
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.89
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.89
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.89
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.89
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.89
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.89
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.89
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.89
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.89
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.89
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.89
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.89
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.89
2pnn_A	273	Transient receptor potential cation channel subfa	99.88
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.88
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.88
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.88
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.88
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.88
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.88
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.88
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.88
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.88
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.88
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.87
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.87
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.87
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.87
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.87
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.86
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.86
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.86
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.86
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.85
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.85
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.85
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.84
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.84
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.84
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.83
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.83
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.82
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.77
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.77
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.77
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.77
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.76
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.74
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.72
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.71
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.69
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.69
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.68
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.68
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.68
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.68
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.67

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=1.7e-27  Score=209.52  Aligned_cols=126  Identities=27%  Similarity=0.297  Sum_probs=117.8

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      ..+++|++.|+|.      |+|||++|+.+|+.++|++||+. |+.+.+|.+|.|||++|+.+|+.++|++|++.| |++
T Consensus        18 ~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn   97 (169)
T 4gpm_A           18 DRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN   97 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence            4678999999994      99999999999999999999999 668999999999999999999999999999999 655


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                          .|+||||+|+++|+.++|++|++.|++    +..|.|||+.|+..++.++++||+++.
T Consensus        98 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A           98 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence                799999999999999999999999997    678999999999999999999999874

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=6.6e-26  Score=188.28  Aligned_cols=123  Identities=19%  Similarity=0.211  Sum_probs=113.6

Q ss_pred             HHHHHHHhcCCCC-----cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-
Q 006847          324 GLLGLLVEGGADN-----VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-  395 (629)
Q Consensus       324 gLlKsLIEgGaD~-----gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-  395 (629)
                      ..+++|++.|+|.     |+|||++|+.+|++|+|++|++. ++.+..|.+|.|||++|+.+|+.++|++|++.| +++ 
T Consensus        16 ~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~   95 (153)
T 1awc_B           16 DEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA   95 (153)
T ss_dssp             HHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred             HHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCC
Confidence            4678899999884     89999999999999999999998 568889999999999999999999999999999 544 


Q ss_pred             ---ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhh
Q 006847          396 ---AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLL  446 (629)
Q Consensus       396 ---~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLL  446 (629)
                         .|.||||.|+++|+.++|+||++.|++    +..|.|||+.|+..++.++++||.
T Consensus        96 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~  153 (153)
T 1awc_B           96 KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence               799999999999999999999999996    567999999999999999999983

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.92  E-value=1.5e-25  Score=189.45  Aligned_cols=126  Identities=24%  Similarity=0.249  Sum_probs=116.5

Q ss_pred             HHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          323 QGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       323 qgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      ..++++|++.|+|.      |+|||++|+.+|+.|+|++||+. ++.+..|.+|.|||++|+.+|+.+++++|++.| +.
T Consensus        27 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  106 (169)
T 2y1l_E           27 DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV  106 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            35688999999984      89999999999999999999998 568889999999999999999999999999999 44


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                      +    .|.||||.|+++|+.++|+||++.|++    +..|.|||+.|+..++.+++++|+..
T Consensus       107 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            3    799999999999999999999999997    56799999999999999999999874

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.92  E-value=1e-25  Score=186.32  Aligned_cols=125  Identities=21%  Similarity=0.140  Sum_probs=114.9

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      ..+++|++.|+|.      |+|||+.|+. |+.|+|++||+. ++.+..|.+|.|||++|+.+|+.++|++|++.| +++
T Consensus        19 ~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   97 (162)
T 1ihb_A           19 EQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN   97 (162)
T ss_dssp             HHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5678899999984      9999999999 999999999998 568889999999999999999999999999999 544


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc-----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR-----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd-----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                          .|.||||.|+++|+.++|+||++.|++     +..|.|||+.|+..++.++++||+.+.
T Consensus        98 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A           98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence                799999999999999999999999996     457999999999999999999999764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=9.4e-26  Score=188.59  Aligned_cols=129  Identities=18%  Similarity=0.129  Sum_probs=118.0

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .++++|++.|+|.      |+|||++|+.+|+.|+|++|++. ++.+..|.+|.|||++|+.+|+.++|++|++.| +++
T Consensus        17 ~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   96 (167)
T 3v31_A           17 LYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN   96 (167)
T ss_dssp             HHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            4677888988874      89999999999999999999998 568889999999999999999999999999999 444


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChh
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQH  452 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~  452 (629)
                          .|.||||.|+.+|+.++|+||++.|++    +..|.|||+.|+..++.++++||+++.++.
T Consensus        97 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A           97 EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence                799999999999999999999999996    567999999999999999999999887653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.92  E-value=1.3e-25  Score=188.45  Aligned_cols=130  Identities=22%  Similarity=0.181  Sum_probs=117.9

Q ss_pred             HHHHHHHhcCCCC-------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN-------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~-------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      ..++.|++.|.+.       |+|||++|+.+|++|+|++||+. ++.+..|.+|.|||++|+.+|+.++|++|++.| +.
T Consensus        16 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   95 (172)
T 3v30_A           16 DQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI   95 (172)
T ss_dssp             HHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            4567788877762       89999999999999999999998 568889999999999999999999999999999 54


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChhh
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQHV  453 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~v  453 (629)
                      +    .|.||||.|+++|+.++|++|++.|++    +..|.|||+.|+..++.+++++|+.+.++..
T Consensus        96 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (172)
T 3v30_A           96 NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF  162 (172)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            4    799999999999999999999999997    5679999999999999999999999876543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.92  E-value=1.5e-25  Score=191.87  Aligned_cols=125  Identities=19%  Similarity=0.143  Sum_probs=108.6

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .++++|++.|+|.      |+|||++|+.+|+.|+|++|++. ++.+..|.+|.|||++|+.+|+.++|++|++.| +++
T Consensus        49 ~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  128 (192)
T 2rfm_A           49 NAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN  128 (192)
T ss_dssp             GGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            3567888888873      88999999999999999999988 557888899999999999999999999999999 443


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                          .|.||||.|+++|+.++|++|++.|++    +..|.|||+.|+..++.++++||+.+
T Consensus       129 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          129 DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence                789999999999999999999999996    56788999999999999999999864

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.91  E-value=6.8e-25  Score=193.60  Aligned_cols=126  Identities=21%  Similarity=0.124  Sum_probs=103.1

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH--------------------------------------
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI--------------------------------------  359 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI--------------------------------------  359 (629)
                      .++++|++.|+|.      |.|||++|+++|+.|+|++|++.                                      
T Consensus        59 ~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (282)
T 1oy3_D           59 STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN  138 (282)
T ss_dssp             HHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccch
Confidence            4677888888884      88888888888888888888873                                      


Q ss_pred             ----------hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-----ccchHHHHHHHhCCchHHHHHHHhCcc-
Q 006847          360 ----------AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-----AFLGPLMRAAERGCMQVVQWFVKRGCR-  422 (629)
Q Consensus       360 ----------A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-----~G~TPLI~ASenGhLEVVKYLIS~GAd-  422 (629)
                                +..+..+.+|.|||++|+++|+.++|++|++.| +++     .|.||||+|+++|+.++|++|++.|++ 
T Consensus       139 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~  218 (282)
T 1oy3_D          139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP  218 (282)
T ss_dssp             -----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             hhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                      124567778888888888888888888888888 433     388888888888888888888888886 


Q ss_pred             ---ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          423 ---DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       423 ---d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                         +..|.|||+.|+..++.+++++|+.+.
T Consensus       219 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  248 (282)
T 1oy3_D          219 TARMYGGRTPLGSALLRPNPILARLLRAHG  248 (282)
T ss_dssp             TCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred             cccccCCCCHHHHHHHcCCcHHHHHHHHcC
Confidence               556888888888888888888888775

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=4.6e-25  Score=181.19  Aligned_cols=111  Identities=23%  Similarity=0.252  Sum_probs=104.4

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----c-cchHHHHHHHhCC
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----A-FLGPLMRAAERGC  409 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~-G~TPLI~ASenGh  409 (629)
                      |.|||++|+++|++|+|++||+. ++.+.+|.+|.|||++|+. |+.++|++|++.| +++    . |.||||+|+.+|+
T Consensus        12 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~   90 (136)
T 1d9s_A           12 SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGF   90 (136)
T ss_dssp             CSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCC
Confidence            89999999999999999999998 5688899999999999999 9999999999999 544    5 8999999999999


Q ss_pred             chHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          410 MQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       410 LEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                      .++|++|++.|++    +..|.|||+.|+..++.++++||+.+
T Consensus        91 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           91 LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             HHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999997    56799999999999999999999875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.91  E-value=2e-25  Score=198.05  Aligned_cols=130  Identities=11%  Similarity=0.059  Sum_probs=115.0

Q ss_pred             HHHHHHHhcCCC-----------------CcchhHHHHhhcCCHHHHHHHHHH-hhhhccc--------------CCcch
Q 006847          324 GLLGLLVEGGAD-----------------NVNQCFLEASRFGSTELVRILLQI-AQRNSLD--------------VDVDL  371 (629)
Q Consensus       324 gLlKsLIEgGaD-----------------~gnTPLL~AS~~GhLEVVKyLISI-A~knak~--------------~DgdT  371 (629)
                      .++++|++.|+|                 .|.|||++|+.+|++|+|++||+. |+.+..+              .+|.|
T Consensus        63 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~t  142 (260)
T 3jxi_A           63 DTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL  142 (260)
T ss_dssp             THHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSS
T ss_pred             HHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCC
Confidence            356777777764                 599999999999999999999998 5678777              68999


Q ss_pred             hhHHhhhcCccceehhhhc---cC-Ccc----ccchHHHHHHHhCC---------chHHHHHHHhCcc-----------c
Q 006847          372 ALGFASHYCKIGTMECLVE---EG-NAV----AFLGPLMRAAERGC---------MQVVQWFVKRGCR-----------D  423 (629)
Q Consensus       372 pLi~AS~nGhLEVVKYLIS---~G-d~e----~G~TPLI~ASenGh---------LEVVKYLIS~GAd-----------d  423 (629)
                      |||+|+.+|+.++|++|++   .| +++    .|+||||+|++.|+         .++|++|++.|++           +
T Consensus       143 pL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d  222 (260)
T 3jxi_A          143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN  222 (260)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhccc
Confidence            9999999999999999999   78 554    79999999999887         7999999999985           3


Q ss_pred             cccCchhhHhhhcChHHHHHhhhcCCChhh
Q 006847          424 MDLCLALTAATSSSQVEVAAYLLPHVPQHV  453 (629)
Q Consensus       424 ~~g~taL~tA~s~gq~eVVkYLLS~vPq~v  453 (629)
                      ..|.|||+.|+..|+.+++++|+.+.+.+.
T Consensus       223 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          223 NDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence            579999999999999999999999886543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.91  E-value=1e-24  Score=181.95  Aligned_cols=125  Identities=19%  Similarity=0.204  Sum_probs=110.1

Q ss_pred             HHHHHHHh-cCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVE-GGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIE-gGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      ..++.|++ ++.+.      |+|||++|+.+|++|+|++|++. ++.+..|.+|.|||++|+.+|+.++|++|++.| ++
T Consensus        22 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  101 (165)
T 3twr_A           22 ETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV  101 (165)
T ss_dssp             HHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC
Confidence            35677887 44332      78999999999999999999998 568889999999999999999999999999999 54


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +    .|.|||++|+++|+.++|++|++.|++    +..|.|||+.|.. ++.++++||+...
T Consensus       102 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          102 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            4    799999999999999999999999996    6689999999888 8899999998763

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.91  E-value=2.4e-24  Score=187.58  Aligned_cols=127  Identities=20%  Similarity=0.146  Sum_probs=113.0

Q ss_pred             HHHHHHHhc-CCCC------cchhHHHHhhcCCHHHHHHHHHHh-hh-----hcccCCcchhhHHhhhcCccceehhhhc
Q 006847          324 GLLGLLVEG-GADN------VNQCFLEASRFGSTELVRILLQIA-QR-----NSLDVDVDLALGFASHYCKIGTMECLVE  390 (629)
Q Consensus       324 gLlKsLIEg-GaD~------gnTPLL~AS~~GhLEVVKyLISIA-~k-----nak~~DgdTpLi~AS~nGhLEVVKYLIS  390 (629)
                      .++++|++. |+|.      |+|||++|+.+|+.|+|++||+.. +.     +..|.+|.|||++|+.+|+.++|++|++
T Consensus        17 ~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   96 (232)
T 2rfa_A           17 QALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA   96 (232)
T ss_dssp             HHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHh
Confidence            467888886 8884      999999999999999999999983 33     5678899999999999999999999999


Q ss_pred             cC-Ccc-----------------ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHH----Hh
Q 006847          391 EG-NAV-----------------AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVA----AY  444 (629)
Q Consensus       391 ~G-d~e-----------------~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVV----kY  444 (629)
                      .| +++                 .|.||||.|+++|+.++|++|++.|++    +..|.||||.|+..++.+++    ++
T Consensus        97 ~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~  176 (232)
T 2rfa_A           97 RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNL  176 (232)
T ss_dssp             TTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHH
T ss_pred             CCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHH
Confidence            99 443                 399999999999999999999999997    67899999999999999998    88


Q ss_pred             hhcCCC
Q 006847          445 LLPHVP  450 (629)
Q Consensus       445 LLS~vP  450 (629)
                      |+++..
T Consensus       177 Ll~~g~  182 (232)
T 2rfa_A          177 LLSYDG  182 (232)
T ss_dssp             HHHTTC
T ss_pred             HHhcCC
Confidence            877654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.91  E-value=1.1e-24  Score=191.38  Aligned_cols=129  Identities=18%  Similarity=0.113  Sum_probs=117.7

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHHhh-------hhcccCCcchhhHHhhhcCccceehhhhc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQIAQ-------RNSLDVDVDLALGFASHYCKIGTMECLVE  390 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISIA~-------knak~~DgdTpLi~AS~nGhLEVVKYLIS  390 (629)
                      .++++|++.|+|.      |+|||++|+.+|+.|+|++|++...       .+..+.+|.|||++|+.+|+.++|++|++
T Consensus        59 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  138 (236)
T 1ikn_D           59 EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS  138 (236)
T ss_dssp             HHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            5788999999984      8999999999999999999999843       46788899999999999999999999999


Q ss_pred             cC-Ccc-----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChh
Q 006847          391 EG-NAV-----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQH  452 (629)
Q Consensus       391 ~G-d~e-----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~  452 (629)
                      .| +++     .|.||||+|+++|+.++|+||++.|++    +..|.|||+.|+..++.++++||+.+...+
T Consensus       139 ~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          139 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence            99 433     799999999999999999999999997    567999999999999999999999987654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.91  E-value=1.2e-24  Score=202.07  Aligned_cols=128  Identities=22%  Similarity=0.270  Sum_probs=110.6

Q ss_pred             HHHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-C
Q 006847          322 IQGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-N  393 (629)
Q Consensus       322 iqgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d  393 (629)
                      .+.++++|++.|+|.      |+|||++|+++|+.|+|++||+. |+.+..+.+|.|||++|+.+++.+++++|++.| +
T Consensus        65 ~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  144 (269)
T 4b93_B           65 AQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK  144 (269)
T ss_dssp             ----------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCC
Confidence            345788999999984      99999999999999999999998 668889999999999999999999999999999 5


Q ss_pred             cc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          394 AV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       394 ~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      ++    .|.||||+|+++|+.++|++|++.|++    +..|.||||.|+..|+.++|++|+.+.
T Consensus       145 ~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G  208 (269)
T 4b93_B          145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG  208 (269)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence            54    799999999999999999999999997    567999999999999999999999875

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.91  E-value=2.1e-24  Score=193.88  Aligned_cols=125  Identities=22%  Similarity=0.207  Sum_probs=84.6

Q ss_pred             HHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-
Q 006847          325 LLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-  395 (629)
Q Consensus       325 LlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-  395 (629)
                      ++++|++.|+|.      |.|||++|+.+|+.|+|++||+. |+.+..|.+|.|||++|+.+|+.++|++|++.| +++ 
T Consensus        55 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  134 (299)
T 1s70_B           55 EVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA  134 (299)
T ss_dssp             HHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence            556666767663      66777777777777777777776 446666777777777777777777777777766 322 


Q ss_pred             ---------------------------------------------------------------ccchHHHHHHHhCCchH
Q 006847          396 ---------------------------------------------------------------AFLGPLMRAAERGCMQV  412 (629)
Q Consensus       396 ---------------------------------------------------------------~G~TPLI~ASenGhLEV  412 (629)
                                                                                     .|.||||.|+++|+.++
T Consensus       135 ~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  214 (299)
T 1s70_B          135 VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV  214 (299)
T ss_dssp             CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHH
T ss_pred             cCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHH
Confidence                                                                           35667777777777777


Q ss_pred             HHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          413 VQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       413 VKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      |++|++.|++    +..|.||||.|+..++.+++++|+.+.
T Consensus       215 v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  255 (299)
T 1s70_B          215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL  255 (299)
T ss_dssp             HHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC
Confidence            7777777764    445667777777777777777776553

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.91  E-value=2e-24  Score=186.39  Aligned_cols=126  Identities=20%  Similarity=0.140  Sum_probs=98.1

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHHh--hhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQIA--QRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISIA--~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .++++|++.|+|.      |+|||++|+.+|+.|+|++|++..  ..+..+.+|.|||++|+.+|+.++|++|++.| ++
T Consensus        39 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  118 (223)
T 2f8y_A           39 DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV  118 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC
Confidence            4677788888773      778888888888888888888763  46667777888888888888888888888887 43


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +    .|.||||.|+.+|+.++|+||++.|++    +..|.|||+.|+..++.+++++|+.+.
T Consensus       119 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  181 (223)
T 2f8y_A          119 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF  181 (223)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence            3    578888888888888888888888875    456788888888888888888888775

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.91  E-value=3.1e-24  Score=182.46  Aligned_cols=126  Identities=21%  Similarity=0.204  Sum_probs=110.4

Q ss_pred             HHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH--hhhhcccCCcchhhHHhhhcCccceehhhhccC--
Q 006847          323 QGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI--AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG--  392 (629)
Q Consensus       323 qgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI--A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G--  392 (629)
                      ..++++|++.|+|.      |+|||++|+.+|+.|+|++|++.  +..+..|.+|.|||++|+++|+.++|++|++.|  
T Consensus        52 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  131 (201)
T 3hra_A           52 IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE  131 (201)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            35788999999984      88999999999999999999965  457788899999999999999999999999998  


Q ss_pred             Ccc----ccchHHHHHHHhCC-----chHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          393 NAV----AFLGPLMRAAERGC-----MQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       393 d~e----~G~TPLI~ASenGh-----LEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                      +++    .|.||||.|+..|.     .++|++|++.|++    +..|.|||+.|+..++.+++++|+.+
T Consensus       132 ~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             CcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            332    78999999998886     9999999999996    56789999999999999999999875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.90  E-value=8.2e-25  Score=196.67  Aligned_cols=126  Identities=17%  Similarity=0.155  Sum_probs=112.4

Q ss_pred             HHHHHHHhcCCC-----------------CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccC--------------Ccch
Q 006847          324 GLLGLLVEGGAD-----------------NVNQCFLEASRFGSTELVRILLQI-AQRNSLDV--------------DVDL  371 (629)
Q Consensus       324 gLlKsLIEgGaD-----------------~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~--------------DgdT  371 (629)
                      .++++|++.|+|                 .|+|||++|+++|+.|+|++||+. |+.+..+.              +|.|
T Consensus        71 ~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~t  150 (273)
T 2pnn_A           71 DTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGEL  150 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBS
T ss_pred             HHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCC
Confidence            456777777653                 499999999999999999999999 56777776              7999


Q ss_pred             hhHHhhhcCccceehhhhc---cC-Ccc----ccchHHHHHHHhCC---------chHHHHHHHhCcc-----------c
Q 006847          372 ALGFASHYCKIGTMECLVE---EG-NAV----AFLGPLMRAAERGC---------MQVVQWFVKRGCR-----------D  423 (629)
Q Consensus       372 pLi~AS~nGhLEVVKYLIS---~G-d~e----~G~TPLI~ASenGh---------LEVVKYLIS~GAd-----------d  423 (629)
                      ||++|+.+|+.++|++|++   .| +++    .|.||||+|++.|+         .++|++|++.|++           +
T Consensus       151 pL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d  230 (273)
T 2pnn_A          151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITN  230 (273)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC
T ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccC
Confidence            9999999999999999999   78 544    89999999999998         8999999999985           4


Q ss_pred             cccCchhhHhhhcChHHHHHhhhcCC
Q 006847          424 MDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       424 ~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      ..|.|||+.|+..++.+++++|+.+-
T Consensus       231 ~~g~TpL~~A~~~g~~~iv~~Ll~~g  256 (273)
T 2pnn_A          231 RKGLTPLALAASSGKIGVLAYILQRE  256 (273)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhChHHHHHHHHHCC
Confidence            57999999999999999999999865

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.90  E-value=4.5e-24  Score=197.01  Aligned_cols=155  Identities=23%  Similarity=0.214  Sum_probs=124.7

Q ss_pred             HHHHHHHHhcCCCC----cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-
Q 006847          323 QGLLGLLVEGGADN----VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-  395 (629)
Q Consensus       323 qgLlKsLIEgGaD~----gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-  395 (629)
                      ..+.++|++++.+.    |+|||++|+++|+.|+|++||+. ++.+..  ||.|||++|+.+|+.++|++|++.| +++ 
T Consensus        13 ~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   90 (285)
T 3kea_A           13 KQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQ   90 (285)
T ss_dssp             HHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            45566777777764    89999999999999999999998 455555  5899999999999999999999999 544 


Q ss_pred             ---ccchHHHHHHHhCCchHHHHHHHhCcc----cccc-CchhhHhhhcChHHHHHhhhcCCChhhhh-HhHHHHHHHhc
Q 006847          396 ---AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDL-CLALTAATSSSQVEVAAYLLPHVPQHVLA-ALSIEILKAAG  466 (629)
Q Consensus       396 ---~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g-~taL~tA~s~gq~eVVkYLLS~vPq~vl~-alsieilkAA~  466 (629)
                         .|.||||+|+++|++++|+||++.|++    +..| .|||+.|+..++.++++||+.+.|..... ...+-+-.|+.
T Consensus        91 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~  170 (285)
T 3kea_A           91 FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIK  170 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHH
Confidence               689999999999999999999999996    4456 79999999999999999999998766543 33333334554


Q ss_pred             ccCCCCccceeehhhc
Q 006847          467 ERSGGSLDGVAFLLHS  482 (629)
Q Consensus       467 ~rs~gs~~GV~flL~S  482 (629)
                         .|.++-|.+||..
T Consensus       171 ---~g~~~~v~~Ll~~  183 (285)
T 3kea_A          171 ---NGHVDMMILLLDY  183 (285)
T ss_dssp             ---TTCHHHHHHHHHH
T ss_pred             ---cChHHHHHHHHHc
Confidence               5677777777754

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.90  E-value=3.6e-24  Score=176.62  Aligned_cols=124  Identities=21%  Similarity=0.172  Sum_probs=107.4

Q ss_pred             HHHHHHHhc-CCC------CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEG-GAD------NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEg-GaD------~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      ..+++|++. +.|      .|+|||++ +.+|+.|+|++|++. ++.+.+|.+|.|||++|+.+|+.++|++|++.| ++
T Consensus        16 ~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   94 (156)
T 1bd8_A           16 QEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV   94 (156)
T ss_dssp             HHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            355667765 224      28999999 999999999999998 568889999999999999999999999999999 44


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +    .|.||||.|+++|+.++|+||++. ++    +..|.|||+.|+..++.+++++|++++
T Consensus        95 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  156 (156)
T 1bd8_A           95 NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHM  156 (156)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTTC
T ss_pred             CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhhC
Confidence            4    799999999999999999999998 75    567999999999999999999999864

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=1.8e-24  Score=177.64  Aligned_cols=112  Identities=25%  Similarity=0.259  Sum_probs=105.3

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCc
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCM  410 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhL  410 (629)
                      +.|||++|+.+|++|+|++||+. ++.+..|.+|.|||++|+.+|+.++|++|++.| +++    .|.||||.|+++|+.
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~   93 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHL   93 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH
Confidence            78999999999999999999998 568889999999999999999999999999999 544    799999999999999


Q ss_pred             hHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          411 QVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       411 EVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                      ++|++|++.|++    +..|.|||+.|+..++.+++++|+..
T Consensus        94 ~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           94 EIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            999999999996    56799999999999999999999874

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=2.4e-24  Score=169.02  Aligned_cols=114  Identities=27%  Similarity=0.321  Sum_probs=105.8

Q ss_pred             CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCC
Q 006847          336 NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGC  409 (629)
Q Consensus       336 ~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGh  409 (629)
                      +|.|||+.|+++|+.|+|++|++. ++.+..+.+|.|||++|+.+|+.+++++|++.| +++    .|.||||.|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            388999999999999999999998 557889999999999999999999999999999 443    79999999999999


Q ss_pred             chHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          410 MQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       410 LEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      .++|+||++.|++    +..|.|||+.|+..++.++++||+++.
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            9999999999997    567999999999999999999998753

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.90  E-value=2.5e-24  Score=189.98  Aligned_cols=126  Identities=17%  Similarity=0.062  Sum_probs=110.9

Q ss_pred             HHHHHHHhcCCC---C------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-
Q 006847          324 GLLGLLVEGGAD---N------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-  392 (629)
Q Consensus       324 gLlKsLIEgGaD---~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-  392 (629)
                      .++++|++.|++   .      |.|||++|+.+|+.|+|++||+. |+.+..|.+|.|||++|+.+|+.++|++|++.| 
T Consensus        23 ~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  102 (282)
T 1oy3_D           23 PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP  102 (282)
T ss_dssp             HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCC
T ss_pred             HHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCC
Confidence            467888888876   1      88999999999999999999998 568889999999999999999999999999977 


Q ss_pred             C-----------------------------------------------c----cccchHHHHHHHhCCchHHHHHHHhCc
Q 006847          393 N-----------------------------------------------A----VAFLGPLMRAAERGCMQVVQWFVKRGC  421 (629)
Q Consensus       393 d-----------------------------------------------~----e~G~TPLI~ASenGhLEVVKYLIS~GA  421 (629)
                      +                                               .    ..|.||||+|+.+|+.++|++|++.|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  182 (282)
T 1oy3_D          103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA  182 (282)
T ss_dssp             SSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             CCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC
Confidence            2                                               1    168999999999999999999999999


Q ss_pred             c----c-cccCchhhHhhhcChHHHHHhhhcCC
Q 006847          422 R----D-MDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       422 d----d-~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +    + ..|.||||.|+..++.+++++|+.+.
T Consensus       183 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  215 (282)
T 1oy3_D          183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG  215 (282)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence            6    2 24999999999999999999999875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.90  E-value=3e-24  Score=183.74  Aligned_cols=131  Identities=19%  Similarity=0.220  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHhcCCCCcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc--
Q 006847          320 TVIQGLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV--  395 (629)
Q Consensus       320 ~~iqgLlKsLIEgGaD~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e--  395 (629)
                      ..|+..+..+++.--+.|+|||++|+.+|+.|+|++|++. ++.+..|.+|.|||++|+.+|+.++|++|++.| +++  
T Consensus        18 ~~i~~~~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   97 (192)
T 2rfm_A           18 KSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK   97 (192)
T ss_dssp             HHHHHTHHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred             hhhhhhhHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            4467777888887777799999999999999999999998 558889999999999999999999999999999 544  


Q ss_pred             --ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          396 --AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       396 --~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                        .|.||||.|+.+|+.++|+||++.|++    +..|.||||.|+..++.++++||+.+-.
T Consensus        98 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  158 (192)
T 2rfm_A           98 DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA  158 (192)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence              799999999999999999999999996    5679999999999999999999998753

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.90  E-value=2.7e-24  Score=187.26  Aligned_cols=129  Identities=14%  Similarity=0.040  Sum_probs=114.9

Q ss_pred             HHHHHHHhcCCC-----------CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccC-------------CcchhhHHhhh
Q 006847          324 GLLGLLVEGGAD-----------NVNQCFLEASRFGSTELVRILLQI-AQRNSLDV-------------DVDLALGFASH  378 (629)
Q Consensus       324 gLlKsLIEgGaD-----------~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~-------------DgdTpLi~AS~  378 (629)
                      .++++|++.|+|           .|+|||++|+.+|+.|+|++||+. ++.+..+.             +|.|||++|+.
T Consensus        51 ~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  130 (232)
T 2rfa_A           51 EAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC  130 (232)
T ss_dssp             HHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHH
T ss_pred             HHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHH
Confidence            577889999987           389999999999999999999998 44555544             79999999999


Q ss_pred             cCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHH----HHHHHhCcc----------ccccCchhhHhhhcChH
Q 006847          379 YCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVV----QWFVKRGCR----------DMDLCLALTAATSSSQV  439 (629)
Q Consensus       379 nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVV----KYLIS~GAd----------d~~g~taL~tA~s~gq~  439 (629)
                      +|+.++|++|++.| |++    .|.||||+|+.+|+.++|    ++|++.|++          +..|.|||+.|+..|+.
T Consensus       131 ~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~  210 (232)
T 2rfa_A          131 VGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI  210 (232)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCH
Confidence            99999999999999 554    799999999999999998    999999985          45799999999999999


Q ss_pred             HHHHhhhcCCChh
Q 006847          440 EVAAYLLPHVPQH  452 (629)
Q Consensus       440 eVVkYLLS~vPq~  452 (629)
                      ++++||+++.+..
T Consensus       211 ~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          211 VMFQHLMQKRKHI  223 (232)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCccc
Confidence            9999999886443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.90  E-value=5.4e-24  Score=184.60  Aligned_cols=126  Identities=22%  Similarity=0.228  Sum_probs=92.0

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .++++|++.|+|.      |+|||++|+.+|+.|+|++|++. ++.+..|.+|.|||++|+.+|+.+++++|++.| +++
T Consensus        54 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  133 (231)
T 3aji_A           54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD  133 (231)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            4566777777763      67777777777777777777776 446667777777777777777777777777777 333


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                          .|.|||+.|+++|++++|++|++.|++    +..|.|||+.|+..++.++++||+.+.
T Consensus       134 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  195 (231)
T 3aji_A          134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG  195 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCC
Confidence                577777777777777777777777775    456777777777777777777777654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.90  E-value=4.1e-24  Score=191.36  Aligned_cols=129  Identities=20%  Similarity=0.223  Sum_probs=111.7

Q ss_pred             HHHHHHHhcCC-C------CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGA-D------NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGa-D------~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .++++|++.|+ |      .|.|||++|+++|+.|+|++||+. ++.+..|.+|+|||++|+.+|+.++|++|++.| ++
T Consensus       104 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  183 (253)
T 1yyh_A          104 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK  183 (253)
T ss_dssp             HHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            57788999887 3      289999999999999999999998 568889999999999999999999999999999 54


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChh
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQH  452 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~  452 (629)
                      +    .|.|||+.|+++|+.++|++|++.|++    +..|.|||+.|...|+.||++||...-|.+
T Consensus       184 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~~  249 (253)
T 1yyh_A          184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH  249 (253)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-----
T ss_pred             CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhhc
Confidence            4    799999999999999999999999996    567999999999999999999999887554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.90  E-value=5.7e-24  Score=180.80  Aligned_cols=127  Identities=17%  Similarity=0.052  Sum_probs=114.5

Q ss_pred             HHHHHHHhc-CCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEG-GADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEg-GaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .++++|++. +.|.      |+|||++|+.+|+.|+|++||+. ++.+..|.+|.|||++|+.+|+.++|++|++.| ++
T Consensus        19 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   98 (179)
T 3f6q_A           19 VAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI   98 (179)
T ss_dssp             HHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456777775 5542      89999999999999999999999 568889999999999999999999999999999 54


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      +    .|.||||.|+.+|+.++|++|++.|++    +..|.|||+.|...++.+++++|+.+..
T Consensus        99 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A           99 NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            4    799999999999999999999999997    5679999999999999999999998763

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.90  E-value=8.2e-24  Score=182.55  Aligned_cols=126  Identities=20%  Similarity=0.209  Sum_probs=115.9

Q ss_pred             HHHHHHHhcCC-C------CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGA-D------NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGa-D------~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .++++|++.|+ +      .|.|||++|+.+|+.|+|++|++. ++.+..|.+|+|||++|+.+|+.++|++|++.| ++
T Consensus        72 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  151 (223)
T 2f8y_A           72 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK  151 (223)
T ss_dssp             HHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            57889999887 3      289999999999999999999998 568889999999999999999999999999999 54


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +    .|.|||+.|+++|+.++|++|++.|++    +..|.|||+.|+..++.++++||+.+-
T Consensus       152 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g  214 (223)
T 2f8y_A          152 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN  214 (223)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence            4    799999999999999999999999997    567999999999999999999999864

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.90  E-value=1.2e-24  Score=193.35  Aligned_cols=130  Identities=15%  Similarity=0.069  Sum_probs=115.2

Q ss_pred             HHHHHHHhcCCC-----------------CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCC-------------cchh
Q 006847          324 GLLGLLVEGGAD-----------------NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVD-------------VDLA  372 (629)
Q Consensus       324 gLlKsLIEgGaD-----------------~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~D-------------gdTp  372 (629)
                      .++++|++.|+|                 .|+|||++|+.+|+.|+|++||+. |+.+..+.+             |.||
T Consensus        60 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tp  139 (256)
T 2etb_A           60 ACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP  139 (256)
T ss_dssp             TTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSH
T ss_pred             HHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCH
Confidence            457788887764                 289999999999999999999999 567888776             9999


Q ss_pred             hHHhhhcCccceehhhhc---cC-Ccc----ccchHHHHHHH--hCCch-------HHHHHHHhCccc-----------c
Q 006847          373 LGFASHYCKIGTMECLVE---EG-NAV----AFLGPLMRAAE--RGCMQ-------VVQWFVKRGCRD-----------M  424 (629)
Q Consensus       373 Li~AS~nGhLEVVKYLIS---~G-d~e----~G~TPLI~ASe--nGhLE-------VVKYLIS~GAdd-----------~  424 (629)
                      ||+|+.+|+.++|++|++   .| |++    .|+||||+|+.  +|+.+       +|++|++.|++-           .
T Consensus       140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~  219 (256)
T 2etb_A          140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH  219 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCT
T ss_pred             HHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCC
Confidence            999999999999999999   88 544    89999999999  78898       999999999864           4


Q ss_pred             ccCchhhHhhhcChHHHHHhhhcCCChhh
Q 006847          425 DLCLALTAATSSSQVEVAAYLLPHVPQHV  453 (629)
Q Consensus       425 ~g~taL~tA~s~gq~eVVkYLLS~vPq~v  453 (629)
                      .|.|||+.|+..|+.+++++|+++.+.+.
T Consensus       220 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          220 QGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence            69999999999999999999999876554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.90  E-value=1.3e-24  Score=192.91  Aligned_cols=129  Identities=23%  Similarity=0.231  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHhcCCCC----------cchhHHHHh---hcCCHHHHHHHHHHhhh------------hcccCCcchhhHH
Q 006847          321 VIQGLLGLLVEGGADN----------VNQCFLEAS---RFGSTELVRILLQIAQR------------NSLDVDVDLALGF  375 (629)
Q Consensus       321 ~iqgLlKsLIEgGaD~----------gnTPLL~AS---~~GhLEVVKyLISIA~k------------nak~~DgdTpLi~  375 (629)
                      .++.|+++|++.|++.          |.||||+|+   ++|+.|+|++||+.+..            +..|.+|.||||+
T Consensus        20 ~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~   99 (260)
T 3jxi_A           20 GLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHI   99 (260)
T ss_dssp             GGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHH
T ss_pred             HHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHH
Confidence            4677999999999873          889999999   88999999999998432            2345589999999


Q ss_pred             hhhcCccceehhhhccC-Ccc------------------ccchHHHHHHHhCCchHHHHHHH---hCcc----ccccCch
Q 006847          376 ASHYCKIGTMECLVEEG-NAV------------------AFLGPLMRAAERGCMQVVQWFVK---RGCR----DMDLCLA  429 (629)
Q Consensus       376 AS~nGhLEVVKYLIS~G-d~e------------------~G~TPLI~ASenGhLEVVKYLIS---~GAd----d~~g~ta  429 (629)
                      |+.+|++++|++|++.| +++                  .|.||||+|+.+|+.++|++|++   .|++    +..|.||
T Consensus       100 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~Tp  179 (260)
T 3jxi_A          100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTV  179 (260)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCH
T ss_pred             HHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcH
Confidence            99999999999999999 433                  39999999999999999999999   8886    6689999


Q ss_pred             hhHhhhcCh---------HHHHHhhhcCC
Q 006847          430 LTAATSSSQ---------VEVAAYLLPHV  449 (629)
Q Consensus       430 L~tA~s~gq---------~eVVkYLLS~v  449 (629)
                      ||.|+..++         .+++++|+.+.
T Consensus       180 Lh~A~~~~~~~~~~~~~~~~~v~~Ll~~g  208 (260)
T 3jxi_A          180 LHALVAIADNTRENTKFVTKMYDLLLIKC  208 (260)
T ss_dssp             HHHHHHHCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCchhHHHHHHHHHHHHHHhC
Confidence            999998887         69999998874

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.90  E-value=3.2e-24  Score=190.52  Aligned_cols=129  Identities=23%  Similarity=0.160  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHhcCCC----------CcchhHHHHhhc---CCHHHHHHHHHHhh-hhc-----------ccCCcchhhHH
Q 006847          321 VIQGLLGLLVEGGAD----------NVNQCFLEASRF---GSTELVRILLQIAQ-RNS-----------LDVDVDLALGF  375 (629)
Q Consensus       321 ~iqgLlKsLIEgGaD----------~gnTPLL~AS~~---GhLEVVKyLISIA~-kna-----------k~~DgdTpLi~  375 (629)
                      .++.|+++|++.|+|          .|+|||++|+.+   |+.|+|++||+... .+.           .|.+|.||||+
T Consensus        17 ~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~   96 (256)
T 2etb_A           17 ELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHI   96 (256)
T ss_dssp             GGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHH
T ss_pred             HHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHH
Confidence            356789999999986          288999999999   99999999999843 442           33679999999


Q ss_pred             hhhcCccceehhhhccC-Ccc----c-------------cchHHHHHHHhCCchHHHHHHH---hCcc----ccccCchh
Q 006847          376 ASHYCKIGTMECLVEEG-NAV----A-------------FLGPLMRAAERGCMQVVQWFVK---RGCR----DMDLCLAL  430 (629)
Q Consensus       376 AS~nGhLEVVKYLIS~G-d~e----~-------------G~TPLI~ASenGhLEVVKYLIS---~GAd----d~~g~taL  430 (629)
                      |+.+|++++|++|++.| +++    .             |.||||+|+++|+.++|++|++   .|++    +..|.|||
T Consensus        97 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpL  176 (256)
T 2etb_A           97 AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL  176 (256)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHH
Confidence            99999999999999999 544    2             9999999999999999999999   8996    66899999


Q ss_pred             hHhhh--cChHH-------HHHhhhcCC
Q 006847          431 TAATS--SSQVE-------VAAYLLPHV  449 (629)
Q Consensus       431 ~tA~s--~gq~e-------VVkYLLS~v  449 (629)
                      |.|+.  .++.+       ++++|+.+.
T Consensus       177 h~A~~~~~~~~~~~~~~~~iv~~Ll~~g  204 (256)
T 2etb_A          177 HALVMIADNSPENSALVIHMYDGLLQMG  204 (256)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccCCchhhHHHHHHHHHHHHcC
Confidence            99999  88888       999998764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=8.7e-24  Score=184.86  Aligned_cols=126  Identities=22%  Similarity=0.267  Sum_probs=113.9

Q ss_pred             HHHHHHHhcCCCC-------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN-------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~-------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .++++|++.|+|.       |.|||++|+++|+.|+|++||+. ++.+..|.+|.|||++|+.+|+.++|++|++.| ++
T Consensus        19 ~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   98 (285)
T 1wdy_A           19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV   98 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            5788999999873       78999999999999999999998 557889999999999999999999999999999 44


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc--------------ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR--------------DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd--------------d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +    .|.|||+.|+.+|+.++|+||++.|++              +..|.|||+.|+..++.++++||+...
T Consensus        99 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  171 (285)
T 1wdy_A           99 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM  171 (285)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS
T ss_pred             CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhc
Confidence            4    799999999999999999999999996              445889999999999999999999763

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.90  E-value=7.1e-24  Score=195.67  Aligned_cols=129  Identities=12%  Similarity=0.129  Sum_probs=109.9

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCc-chhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDV-DLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~Dg-dTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .++++|++.|+|.      |.|||++|+.+|+.|+|++||+. ++.+..+.+| .|||++|+.+|+.++|++|++.| +.
T Consensus        76 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A           76 KIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence            4678888889884      88999999999999999999998 6688888888 79999999999999999999999 22


Q ss_pred             ---cccchHHHHHHHhCCchHHHHHHHhCcc----ccccCch-hhHhhhcChHHHHHhhhcCCChh
Q 006847          395 ---VAFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLA-LTAATSSSQVEVAAYLLPHVPQH  452 (629)
Q Consensus       395 ---e~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~ta-L~tA~s~gq~eVVkYLLS~vPq~  452 (629)
                         ..|.||||.|+++|+.++|+||++.|++    +..|.|| |+.|+..++.+++++|+.+...+
T Consensus       156 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~  221 (285)
T 3kea_A          156 FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI  221 (285)
T ss_dssp             CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCS
T ss_pred             ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Confidence               2788999999999999999999999986    4568887 99999999999999999887443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.90  E-value=9.3e-24  Score=189.06  Aligned_cols=126  Identities=20%  Similarity=0.140  Sum_probs=106.3

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHHh--hhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQIA--QRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISIA--~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .++++|++.|+|.      |+|||++|+.+|+.|+|++|++..  ..+..+.+|.|||++|+.+|+.++|++|++.| ++
T Consensus        71 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  150 (253)
T 1yyh_A           71 DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV  150 (253)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC
Confidence            4677888888884      788999999999999999998873  46778888889999999999999999999888 44


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +    .|.||||+|+++|+.++|++|++.|++    +..|.|||+.|+..++.+++++|+.+.
T Consensus       151 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  213 (253)
T 1yyh_A          151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF  213 (253)
T ss_dssp             TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            3    688999999999999999999999886    556889999999999999999988875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=1.3e-24  Score=194.80  Aligned_cols=126  Identities=18%  Similarity=0.103  Sum_probs=103.6

Q ss_pred             HHHHHHHhcCCCC-----cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-
Q 006847          324 GLLGLLVEGGADN-----VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-  395 (629)
Q Consensus       324 gLlKsLIEgGaD~-----gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-  395 (629)
                      ..++.||+.|+|.     +.|||+.|+.+|++|+|++||+. ++.+..|.+|.||||+|+.+||.++|++|++.| |++ 
T Consensus        19 ~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   98 (239)
T 1ycs_B           19 KTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA   98 (239)
T ss_dssp             ------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            4567999999995     78999999999999999999988 568889999999999999999999999999999 554 


Q ss_pred             ---ccchHHHHHHHhCCchHHHHHHHhCcc----ccccC-chhhHh--hhcChHHHHHhhhcCC
Q 006847          396 ---AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLC-LALTAA--TSSSQVEVAAYLLPHV  449 (629)
Q Consensus       396 ---~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~-taL~tA--~s~gq~eVVkYLLS~v  449 (629)
                         .|+||||.|+.+|+.++|++|++.|++    +..+. |||+.|  +..|+.++++||+.+.
T Consensus        99 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~  162 (239)
T 1ycs_B           99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  162 (239)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence               799999999999999999999999997    33444 999999  8889999999999864

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.90  E-value=1.3e-23  Score=182.02  Aligned_cols=126  Identities=24%  Similarity=0.230  Sum_probs=109.1

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHHh-----hhhcccCCcchhhHHhhhcCccceehhhhccC
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQIA-----QRNSLDVDVDLALGFASHYCKIGTMECLVEEG  392 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISIA-----~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G  392 (629)
                      .++++|++.|+|.      |.|||++|+.+|+.|+|++|++..     ..+..|.+|.|||++|+.+|+.+++++|++.|
T Consensus        60 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  139 (241)
T 1k1a_A           60 SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG  139 (241)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            4678888989883      889999999999999999999884     56778888999999999999999999999998


Q ss_pred             -Ccc-----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          393 -NAV-----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       393 -d~e-----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                       +.+     .|.||||.|+++|+.++|++|++.|++    +..|.||||.|+..++.+++++|+.+.
T Consensus       140 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  206 (241)
T 1k1a_A          140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG  206 (241)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence             332     589999999999999999999999996    557899999999999999999998864

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=5.2e-24  Score=178.55  Aligned_cols=115  Identities=23%  Similarity=0.218  Sum_probs=105.4

Q ss_pred             CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccch-HHHHHHHhC
Q 006847          336 NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLG-PLMRAAERG  408 (629)
Q Consensus       336 ~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~T-PLI~ASenG  408 (629)
                      .|.|||++|+++|++|+|++||+. ++.+..|.+|.|||++|. +|++++|++|++.| +++    .|.| |||+|+++|
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~   89 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   89 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCC
Confidence            489999999999999999999998 568889999999999996 99999999999999 544    6888 999999999


Q ss_pred             CchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCCh
Q 006847          409 CMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       409 hLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq  451 (629)
                      +.++|++|++.|++    +..|.|||+.|+..++.++++||+.+...
T Consensus        90 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~  136 (156)
T 1bi7_B           90 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG  136 (156)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC
Confidence            99999999999997    56799999999999999999999998643

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.89  E-value=1.4e-23  Score=189.38  Aligned_cols=126  Identities=22%  Similarity=0.250  Sum_probs=94.0

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc-
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA-  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~-  394 (629)
                      .++++|++.|+|.      |+|||++|+.+|+.|+|++||+. ++.+..|.+|.|||++|+.+|+.++|++|++.| ++ 
T Consensus        72 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  151 (351)
T 3utm_A           72 RIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT  151 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            4667777777773      77888888888888888888877 457777777888888888888888888888777 32 


Q ss_pred             ---------------------------------------------------------cccchHHHHHHHhC---CchHHH
Q 006847          395 ---------------------------------------------------------VAFLGPLMRAAERG---CMQVVQ  414 (629)
Q Consensus       395 ---------------------------------------------------------e~G~TPLI~ASenG---hLEVVK  414 (629)
                                                                               ..|.|||+.|+..+   ..++|+
T Consensus       152 ~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~  231 (351)
T 3utm_A          152 LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE  231 (351)
T ss_dssp             CCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHH
T ss_pred             cccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHH
Confidence                                                                     13567777777773   467788


Q ss_pred             HHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          415 WFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       415 YLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +|++.|++    +..|.||||.|+..++.+++++|+.+.
T Consensus       232 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  270 (351)
T 3utm_A          232 LLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG  270 (351)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            88887775    456777888888888888888877764

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.89  E-value=6.8e-24  Score=186.69  Aligned_cols=112  Identities=26%  Similarity=0.321  Sum_probs=105.6

Q ss_pred             hhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchH
Q 006847          339 QCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQV  412 (629)
Q Consensus       339 TPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEV  412 (629)
                      ++|+.|+++|++|+||+||+. |+.|.+|.+|+|||++|+.+|+.+++++|++.| |++    .|+||||+|+++|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            589999999999999999999 679999999999999999999999999999999 554    79999999999999999


Q ss_pred             HHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          413 VQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       413 VKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      |++|++.|++    +..|.|||+.|+..|+.++|++|+.+-.
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga  127 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA  127 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999996    6689999999999999999999998753

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.89  E-value=7.1e-24  Score=192.10  Aligned_cols=124  Identities=18%  Similarity=0.131  Sum_probs=107.0

Q ss_pred             HHHHHhcCCCC---------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          326 LGLLVEGGADN---------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       326 lKsLIEgGaD~---------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      ++.|++.|+|.         +.|||++|+.+|++|+|++||+. ++.+..|.+|.|||++|+.+|++++|++|++.| |+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            46788888883         77999999999999999999998 568899999999999999999999999999999 55


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----c-cccCchhhHh--hhcChHHHHHhhhcCC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----D-MDLCLALTAA--TSSSQVEVAAYLLPHV  449 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d-~~g~taL~tA--~s~gq~eVVkYLLS~v  449 (629)
                      +    .|+||||+|+.+|+.++|++|++.|++    + ..|.|||+.|  +..++.++++||+.+.
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g  146 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE  146 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC
Confidence            4    799999999999999999999999997    3 4799999999  9999999999999864

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.89  E-value=9e-24  Score=183.21  Aligned_cols=126  Identities=15%  Similarity=0.074  Sum_probs=116.7

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .++++|++.|+|.      |.|||++|+.+|+.|+|++|++. ++.+..+.+|.|||++|+.+|++++|++|++.| +++
T Consensus        87 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  166 (231)
T 3aji_A           87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN  166 (231)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc
Confidence            5788999999984      89999999999999999999998 558889999999999999999999999999999 544


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                          .|.|||+.|+++|++++|+||++.|++    +..|.|||+.|...++.++++||+.+-
T Consensus       167 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~  228 (231)
T 3aji_A          167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE  228 (231)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence                799999999999999999999999997    567999999999999999999998653

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=9.9e-24  Score=201.00  Aligned_cols=124  Identities=27%  Similarity=0.285  Sum_probs=64.5

Q ss_pred             HHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-
Q 006847          325 LLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-  395 (629)
Q Consensus       325 LlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-  395 (629)
                      ++++|++.|+|.      |.|||++|+++|++|+|++|++. ++.+.++.+|.|||++|+.+||.++|++|++.| +++ 
T Consensus        29 ~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  108 (437)
T 1n11_A           29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL  108 (437)
T ss_dssp             HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCC
Confidence            444555555542      44555555555555555555554 334445555555555555555555555555555 222 


Q ss_pred             ---ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          396 ---AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       396 ---~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                         .|.||||.|+++|++++|++|++.|++    +..|.|||+.|+..|+.++++||+.+
T Consensus       109 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  168 (437)
T 1n11_A          109 ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER  168 (437)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence               455555555555555555555555553    23455555555555555555555544

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.89  E-value=1.2e-23  Score=195.25  Aligned_cols=126  Identities=21%  Similarity=0.210  Sum_probs=109.9

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .++++|++.|+|.      |.|||+.|+..|+.|++++||+. ++.+.+|.+|.|||++|+++|+.++|++|++.| |++
T Consensus       100 ~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn  179 (269)
T 4b93_B          100 DLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN  179 (269)
T ss_dssp             THHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT
T ss_pred             HHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC
Confidence            3678999999984      99999999999999999999998 668999999999999999999999999999999 655


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcCh-HHHHHhhhcCC
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQ-VEVAAYLLPHV  449 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq-~eVVkYLLS~v  449 (629)
                          .|.||||+|+++|++++|++|++.||+    +..|.|||++|..+++ .++.++|.+.+
T Consensus       180 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~  242 (269)
T 4b93_B          180 ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV  242 (269)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-----
T ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhc
Confidence                799999999999999999999999997    6789999999998886 34444444433

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.89  E-value=1.8e-23  Score=180.33  Aligned_cols=110  Identities=22%  Similarity=0.191  Sum_probs=58.2

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH---hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhC
Q 006847          337 VNQCFLEASRFGSTELVRILLQI---AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERG  408 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI---A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenG  408 (629)
                      |+|||++|+.+|+.|+|++|++.   ++.+..+.+|.|||++|+.+|+.+++++|++.| +++    .|.||||.|+++|
T Consensus        72 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  151 (228)
T 2dzn_A           72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG  151 (228)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            44555555555555555555554   334445555555555555555555555555555 222    4555555555555


Q ss_pred             CchHHHHHHHhC-cc----ccccCchhhHhhhcChHHHHHhhh
Q 006847          409 CMQVVQWFVKRG-CR----DMDLCLALTAATSSSQVEVAAYLL  446 (629)
Q Consensus       409 hLEVVKYLIS~G-Ad----d~~g~taL~tA~s~gq~eVVkYLL  446 (629)
                      +.++|++|++.| ++    +..|.|||+.|+..++.++++||+
T Consensus       152 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             CHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            555555555555 32    334555555555555555555555

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.89  E-value=2e-23  Score=192.20  Aligned_cols=127  Identities=24%  Similarity=0.184  Sum_probs=114.8

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .++++|++.|+|.      |+|||++|+.+|+.|+|++|++. ++.+..|.+|.|||++|+.+|+.++|++|++.| +.+
T Consensus        73 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  152 (285)
T 3d9h_A           73 LSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ  152 (285)
T ss_dssp             HHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC
Confidence            5788999999984      89999999999999999999998 568889999999999999999999999999999 433


Q ss_pred             ---ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          396 ---AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       396 ---~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                         .|.|||+.|+++|+.++|++|++.|++    +..|.|||+.|+..++.+++++|+....
T Consensus       153 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  214 (285)
T 3d9h_A          153 PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA  214 (285)
T ss_dssp             CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC
Confidence               799999999999999999999999996    5678999999999999999999998753

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.89  E-value=1.7e-23  Score=174.90  Aligned_cols=114  Identities=18%  Similarity=0.170  Sum_probs=106.0

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCc
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCM  410 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhL  410 (629)
                      |+|||+.|+++|++|+|++|++. +..+..|.+|+|||++|+.+|++++|++|++.| +++    .|.||||.|+.+|+.
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT   82 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            78999999999999999999998 558889999999999999999999999999999 544    789999999999999


Q ss_pred             hHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          411 QVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       411 EVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      ++|+||++.|++    +..|.|||+.|+..++.++++||+.+..
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  126 (167)
T 3v31_A           83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA  126 (167)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999996    5679999999999999999999997653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.89  E-value=2.3e-23  Score=181.34  Aligned_cols=127  Identities=22%  Similarity=0.290  Sum_probs=107.2

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC--Cc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG--NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G--d~  394 (629)
                      .++++|++.|+|.      |.|||++|+.+|+.|+|++|++. +..+..+.+|.|||++|+.+|+.+++++|++.|  +.
T Consensus        25 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  104 (237)
T 3b7b_A           25 DICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV  104 (237)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCT
T ss_pred             HHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc
Confidence            4678888888874      78899999999999999999987 447778888899999999999999999999888  22


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      +    .|.|||+.|+++|+.++|+||++.|++    +..|.|||+.|+..++.++++||+.+.+
T Consensus       105 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  168 (237)
T 3b7b_A          105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC  168 (237)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTC
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            2    688999999999999999999999886    5578899999999999999999987643

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=7e-24  Score=173.22  Aligned_cols=114  Identities=18%  Similarity=0.084  Sum_probs=103.0

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCc
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCM  410 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhL  410 (629)
                      |+|||++|+.+|++|+|++||+. ++.+.+|.+|.||||+|+.+|+.++|++|++.| +.+    .|.||||+|+++|+.
T Consensus        10 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   89 (137)
T 3c5r_A           10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHV   89 (137)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCH
Confidence            99999999999999999999998 568889999999999999999999999999999 444    799999999999999


Q ss_pred             hHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          411 QVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       411 EVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      ++|++|++.|++    +..|.|||+.|...+..+++++|...-+
T Consensus        90 ~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           90 DIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            999999999997    6689999999999999999999876543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.89  E-value=2.8e-23  Score=180.77  Aligned_cols=127  Identities=20%  Similarity=0.249  Sum_probs=113.1

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH--hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI--AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI--A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .++++|++.|+|.      |.|||++|+.+|+.|+|++|++.  +..+..+.+|.|||++|+.+|+.+++++|++.| ++
T Consensus        58 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  137 (237)
T 3b7b_A           58 EAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI  137 (237)
T ss_dssp             HHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            5778999999884      88999999999999999999998  457778889999999999999999999999999 44


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      +    .|.|||+.|+++|+.++|+||++.|++    +..|.|||+.|+..++.++++||+.+..
T Consensus       138 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  201 (237)
T 3b7b_A          138 NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS  201 (237)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCC
Confidence            3    799999999999999999999999996    4568999999999999999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.89  E-value=2.2e-23  Score=179.86  Aligned_cols=127  Identities=14%  Similarity=0.072  Sum_probs=113.1

Q ss_pred             HHHHHHHhcCCCC-------cchhHHHHhhcCCHHHHHHHHHHh---hhhc-ccCCcchhhHHhhhcCccceehhhhccC
Q 006847          324 GLLGLLVEGGADN-------VNQCFLEASRFGSTELVRILLQIA---QRNS-LDVDVDLALGFASHYCKIGTMECLVEEG  392 (629)
Q Consensus       324 gLlKsLIEgGaD~-------gnTPLL~AS~~GhLEVVKyLISIA---~kna-k~~DgdTpLi~AS~nGhLEVVKYLIS~G  392 (629)
                      ..+++|++.|++.       |.|||++|+.+|+.|+|++|++..   +.+. .+.+|.|||++|+.+|+.+++++|++.|
T Consensus        16 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g   95 (228)
T 2dzn_A           16 FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP   95 (228)
T ss_dssp             HHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSS
T ss_pred             HHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            4677888878763       899999999999999999999983   3455 7889999999999999999999999998


Q ss_pred             ---Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          393 ---NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       393 ---d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                         +.+    .|.|||+.|+++|+.++|+||++.|++    +..|.||||.|+..++.+++++|+.+.+
T Consensus        96 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  164 (228)
T 2dzn_A           96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK  164 (228)
T ss_dssp             SCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             CCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence               222    699999999999999999999999997    5679999999999999999999998873

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.89  E-value=1.6e-23  Score=195.59  Aligned_cols=126  Identities=19%  Similarity=0.072  Sum_probs=72.0

Q ss_pred             HHHHHHHhcCCCC----cchhHHHHhhcCCHHHHHHHHHH-----hhhhc-----------------ccCCcchhhHHhh
Q 006847          324 GLLGLLVEGGADN----VNQCFLEASRFGSTELVRILLQI-----AQRNS-----------------LDVDVDLALGFAS  377 (629)
Q Consensus       324 gLlKsLIEgGaD~----gnTPLL~AS~~GhLEVVKyLISI-----A~kna-----------------k~~DgdTpLi~AS  377 (629)
                      .++++|++.|+|.    |.|||++|+.+|+.|+|++||+.     +..+.                 .|.+|.|||++|+
T Consensus        67 ~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  146 (364)
T 3ljn_A           67 DTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCV  146 (364)
T ss_dssp             HHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHH
T ss_pred             HHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHH
Confidence            3455566656553    55666666666666666666654     11222                 4455566666666


Q ss_pred             hcC--ccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc---------ccccCchhhHhhhcChHHH
Q 006847          378 HYC--KIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR---------DMDLCLALTAATSSSQVEV  441 (629)
Q Consensus       378 ~nG--hLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd---------d~~g~taL~tA~s~gq~eV  441 (629)
                      .+|  ++++|++|++.| +++    .|.||||+|+++|+.++|++|++.|++         +..|.||||.|+..++.++
T Consensus       147 ~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  226 (364)
T 3ljn_A          147 GLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV  226 (364)
T ss_dssp             HSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHH
T ss_pred             HcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHH
Confidence            666  666666666666 332    456666666666666666666665554         2345666666666666666


Q ss_pred             HHhhhcCC
Q 006847          442 AAYLLPHV  449 (629)
Q Consensus       442 VkYLLS~v  449 (629)
                      |++|+.+.
T Consensus       227 v~~Ll~~g  234 (364)
T 3ljn_A          227 AMRFVEMG  234 (364)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHHcC
Confidence            66666543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.89  E-value=2.4e-23  Score=194.41  Aligned_cols=116  Identities=17%  Similarity=0.142  Sum_probs=108.7

Q ss_pred             cchhHHHHhhcC--CHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-C-----cc----ccchHHHH
Q 006847          337 VNQCFLEASRFG--STELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-N-----AV----AFLGPLMR  403 (629)
Q Consensus       337 gnTPLL~AS~~G--hLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d-----~e----~G~TPLI~  403 (629)
                      |.|||++|+.+|  ++|+|++||+. |+.+..|.+|.|||++|+.+|+.++|++|++.| +     .+    .|.||||+
T Consensus       138 g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~  217 (364)
T 3ljn_A          138 GQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW  217 (364)
T ss_dssp             CCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH
T ss_pred             CCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHH
Confidence            789999999999  99999999999 668999999999999999999999999999988 5     43    79999999


Q ss_pred             HHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChh
Q 006847          404 AAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQH  452 (629)
Q Consensus       404 ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~  452 (629)
                      |+++|++++|++|++.|++    +..|.|||+.|+..++.+++++|+.+.+..
T Consensus       218 A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          218 AILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             HHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence            9999999999999999997    668999999999999999999999987654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.88  E-value=1.1e-23  Score=189.42  Aligned_cols=129  Identities=21%  Similarity=0.207  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHhcCCC----------CcchhHHHHhhc---CCHHHHHHHHHHhh--------hhc----ccCCcchhhHH
Q 006847          321 VIQGLLGLLVEGGAD----------NVNQCFLEASRF---GSTELVRILLQIAQ--------RNS----LDVDVDLALGF  375 (629)
Q Consensus       321 ~iqgLlKsLIEgGaD----------~gnTPLL~AS~~---GhLEVVKyLISIA~--------kna----k~~DgdTpLi~  375 (629)
                      +++.|++++++.|++          .|+||||+|+.+   |+.|+|++||+...        .+.    .|.+|.|||++
T Consensus        28 ~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~  107 (273)
T 2pnn_A           28 ELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHI  107 (273)
T ss_dssp             TTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHH
T ss_pred             HHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHH
Confidence            367788888888754          389999999987   99999999999843        233    56689999999


Q ss_pred             hhhcCccceehhhhccC-Ccc------------------ccchHHHHHHHhCCchHHHHHHH---hCcc----ccccCch
Q 006847          376 ASHYCKIGTMECLVEEG-NAV------------------AFLGPLMRAAERGCMQVVQWFVK---RGCR----DMDLCLA  429 (629)
Q Consensus       376 AS~nGhLEVVKYLIS~G-d~e------------------~G~TPLI~ASenGhLEVVKYLIS---~GAd----d~~g~ta  429 (629)
                      |+.+|++++|++|++.| +++                  .|.||||+|+.+|++++|+||++   .|++    +..|.||
T Consensus       108 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tp  187 (273)
T 2pnn_A          108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV  187 (273)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCH
T ss_pred             HHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcH
Confidence            99999999999999999 443                  39999999999999999999999   8996    6689999


Q ss_pred             hhHhhhcCh---------HHHHHhhhcCC
Q 006847          430 LTAATSSSQ---------VEVAAYLLPHV  449 (629)
Q Consensus       430 L~tA~s~gq---------~eVVkYLLS~v  449 (629)
                      ||.|+..++         .+++++|+.+.
T Consensus       188 Lh~A~~~~~~~~~~~~~~~~~v~~Ll~~g  216 (273)
T 2pnn_A          188 LHALVEVADNTVDNTKFVTSMYNEILILG  216 (273)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCcchhHHHHHHHHHHHHHHhh
Confidence            999999998         79999999864

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.88  E-value=1.1e-22  Score=176.32  Aligned_cols=130  Identities=22%  Similarity=0.242  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC
Q 006847          320 TVIQGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG  392 (629)
Q Consensus       320 ~~iqgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G  392 (629)
                      .+++-|++.+.+.|+|.      |.|||++|+.+|+.|+|++|++. ++.+..+.+|.|||++|+.+|+.+++++|++.|
T Consensus        23 ~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  102 (241)
T 1k1a_A           23 PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA  102 (241)
T ss_dssp             HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            34556666666677663      77777777777777777777777 446667777777777777777777777777776


Q ss_pred             C-----cc----ccchHHHHHHHhCCchHHHHHHHhCcc----c-cccCchhhHhhhcChHHHHHhhhcCC
Q 006847          393 N-----AV----AFLGPLMRAAERGCMQVVQWFVKRGCR----D-MDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       393 d-----~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d-~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      .     .+    .|.|||+.|+.+|+.++|++|++.|++    + ..|.|||+.|+..++.+++++|+.+.
T Consensus       103 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  173 (241)
T 1k1a_A          103 APGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG  173 (241)
T ss_dssp             CTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            2     11    577777777777777777777777775    2 45777777777777777777777653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.88  E-value=7.2e-23  Score=174.07  Aligned_cols=126  Identities=15%  Similarity=0.108  Sum_probs=108.3

Q ss_pred             HHHHHHh-cCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC--Cc
Q 006847          325 LLGLLVE-GGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG--NA  394 (629)
Q Consensus       325 LlKsLIE-gGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G--d~  394 (629)
                      .++.|++ +++|.      |+|||++|+++|+.|+|++||+. ++.+..|.+|+|||++|+.+|+.+++++|++.+  +.
T Consensus        20 ~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~   99 (201)
T 3hra_A           20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL   99 (201)
T ss_dssp             HHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCccc
Confidence            3445555 44352      89999999999999999999998 568889999999999999999999999999655  33


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhC-cc----ccccCchhhHhhhcCh-----HHHHHhhhcCCC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRG-CR----DMDLCLALTAATSSSQ-----VEVAAYLLPHVP  450 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~G-Ad----d~~g~taL~tA~s~gq-----~eVVkYLLS~vP  450 (629)
                      +    .|.||||.|+++|+.++|++|++.| ++    +..|.||||.|+..+.     .+++++|+.+..
T Consensus       100 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga  169 (201)
T 3hra_A          100 NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA  169 (201)
T ss_dssp             TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTC
T ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCC
Confidence            3    6999999999999999999999999 54    5679999999999887     999999998753

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.88  E-value=4.4e-23  Score=171.36  Aligned_cols=114  Identities=30%  Similarity=0.322  Sum_probs=104.3

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHHhhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCch
Q 006847          337 VNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQ  411 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISIA~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLE  411 (629)
                      ..|||+.|+++|++|+|++|++.......+.+|.|||++|+.+|+++++++|++.| +++    .|.||||.|+.+|+.+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            46899999999999999999998654457888999999999999999999999999 544    7999999999999999


Q ss_pred             HHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          412 VVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       412 VVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      +|+||++.|++    +..|.|||+.|+..++.++++||+.+-.
T Consensus        82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  124 (153)
T 1awc_B           82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA  124 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999996    5679999999999999999999998753

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.88  E-value=2.6e-23  Score=171.86  Aligned_cols=116  Identities=20%  Similarity=0.169  Sum_probs=106.0

Q ss_pred             CCcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhC
Q 006847          335 DNVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERG  408 (629)
Q Consensus       335 D~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenG  408 (629)
                      +...|||+.|+++|+.|+|++||+. ++.+..|.+|+|||++|+. |+.++|++|++.| +++    .|+||||.|+++|
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4567999999999999999999987 5578899999999999999 9999999999999 544    7999999999999


Q ss_pred             CchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCCh
Q 006847          409 CMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       409 hLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq  451 (629)
                      +.++|++|++.|++    +..|.||||.|+..++.++++||+.+.+.
T Consensus        82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC
Confidence            99999999999996    66899999999999999999999987654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.88  E-value=5.4e-23  Score=173.90  Aligned_cols=114  Identities=29%  Similarity=0.353  Sum_probs=106.1

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCc
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCM  410 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhL  410 (629)
                      +.|||++|+++|+.|+|++||+. ++.+..|.+|.|||++|+.+|++++|++|++.| +.+    .|.||||.|+.+|+.
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   93 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHL   93 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            67899999999999999999999 568889999999999999999999999999999 544    799999999999999


Q ss_pred             hHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          411 QVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       411 EVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      ++|+||++.|++    +..|.|||+.|+..++.++++||+.+-.
T Consensus        94 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  137 (169)
T 2y1l_E           94 EIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA  137 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999996    5679999999999999999999998753

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.88  E-value=5.5e-23  Score=169.56  Aligned_cols=111  Identities=20%  Similarity=0.246  Sum_probs=104.6

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHHh--hhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCC
Q 006847          337 VNQCFLEASRFGSTELVRILLQIA--QRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGC  409 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISIA--~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGh  409 (629)
                      +.|||+.|+++|+.|+|++||+.+  +.+..|.+|+|||++ +.+|+.++|++|++.| +++    .|.||||.|+++|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            579999999999999999999996  688899999999999 9999999999999999 544    79999999999999


Q ss_pred             chHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          410 MQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       410 LEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                      .++|++|++.|++    +..|.||||.|+..++.++++||+.+
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            9999999999996    56899999999999999999999987

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.88  E-value=9.7e-23  Score=187.62  Aligned_cols=126  Identities=21%  Similarity=0.215  Sum_probs=107.6

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHHhhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISIA~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-  395 (629)
                      .++++|++.|+|.      |.|||++|+.+|+.|+|++|++....-..+.+|.|||++|+.+|+.++|++|++.| +++ 
T Consensus       106 ~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  185 (285)
T 3d9h_A          106 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDH  185 (285)
T ss_dssp             HHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            5678888989884      88999999999999999999988443334556889999999999999999999998 444 


Q ss_pred             ---ccchHHHHHHHhCCchHHHHHHHhCcc---ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          396 ---AFLGPLMRAAERGCMQVVQWFVKRGCR---DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       396 ---~G~TPLI~ASenGhLEVVKYLIS~GAd---d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                         .|.||||.|+++|+.++|++|++.|++   +..|.|||+.|+..++.+++++|+.+-
T Consensus       186 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  245 (285)
T 3d9h_A          186 KISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFG  245 (285)
T ss_dssp             CBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence               789999999999999999999999996   457889999999999999999998764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.88  E-value=9.6e-23  Score=188.48  Aligned_cols=113  Identities=24%  Similarity=0.201  Sum_probs=59.8

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH--hhhhcccCCcchhhHHhhhcCc----cceehhhhccC-Ccc----ccchHHHHHH
Q 006847          337 VNQCFLEASRFGSTELVRILLQI--AQRNSLDVDVDLALGFASHYCK----IGTMECLVEEG-NAV----AFLGPLMRAA  405 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI--A~knak~~DgdTpLi~AS~nGh----LEVVKYLIS~G-d~e----~G~TPLI~AS  405 (629)
                      |.|||++|+++|++|+||+||+-  |+.+.+|.+|.|||+++...++    .+++++|++.| |++    .|.||||+|+
T Consensus       168 g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~  247 (337)
T 4g8k_A          168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV  247 (337)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            45666666666666666666643  4455555555555554443332    23455555555 332    4555555555


Q ss_pred             HhCCchHHHHHHHh-Ccc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          406 ERGCMQVVQWFVKR-GCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       406 enGhLEVVKYLIS~-GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +.|+.++|++|++. |++    +..|.||||.|+..|+.+||++|+.+.
T Consensus       248 ~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  296 (337)
T 4g8k_A          248 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  296 (337)
T ss_dssp             HTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            55555555555543 332    344555555555555555555555543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.88  E-value=9.5e-23  Score=184.04  Aligned_cols=156  Identities=22%  Similarity=0.201  Sum_probs=125.7

Q ss_pred             HHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-
Q 006847          325 LLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-  395 (629)
Q Consensus       325 LlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-  395 (629)
                      +.++|.+.|+|.      |+|||++|+.+|++|+|++||+. ++.+..|.+|.|||++|+.+||.++|++|++.| +++ 
T Consensus        40 v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~  119 (351)
T 3utm_A           40 LMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA  119 (351)
T ss_dssp             HHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence            334455567763      89999999999999999999999 568889999999999999999999999999999 444 


Q ss_pred             ---ccchHHHHHHHhCCchHHHHHHHhCccc-------------------------------------------------
Q 006847          396 ---AFLGPLMRAAERGCMQVVQWFVKRGCRD-------------------------------------------------  423 (629)
Q Consensus       396 ---~G~TPLI~ASenGhLEVVKYLIS~GAdd-------------------------------------------------  423 (629)
                         .|.|||+.|+++|+.++|+||++.|++.                                                 
T Consensus       120 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  199 (351)
T 3utm_A          120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA  199 (351)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHH
Confidence               6999999999999999999999999962                                                 


Q ss_pred             ---------cccCchhhHhhhc---ChHHHHHhhhcCCChh--hhhHhHHHHHHHhcccCCCCccceeehhhcc
Q 006847          424 ---------MDLCLALTAATSS---SQVEVAAYLLPHVPQH--VLAALSIEILKAAGERSGGSLDGVAFLLHSD  483 (629)
Q Consensus       424 ---------~~g~taL~tA~s~---gq~eVVkYLLS~vPq~--vl~alsieilkAA~~rs~gs~~GV~flL~Sn  483 (629)
                               ..+.|||+.|+..   +..+++++|+.+....  ......+-+..|+.   .|.++-|.+||...
T Consensus       200 ~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~---~g~~~~v~~Ll~~g  270 (351)
T 3utm_A          200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE---RAHNDVMEVLHKHG  270 (351)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH---TTCHHHHHHHHHTT
T ss_pred             hhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHH---cCCHHHHHHHHHCC
Confidence                     3467999999999   6689999999875322  22222222233444   56778888888764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.88  E-value=5.1e-23  Score=189.71  Aligned_cols=126  Identities=19%  Similarity=0.217  Sum_probs=106.5

Q ss_pred             HHHHHHHhcCC-CC------cchhHHHHh-----hcCCHHHHHHHHHHhh-hhcccCCcchhhHHhhhcCccceehhhhc
Q 006847          324 GLLGLLVEGGA-DN------VNQCFLEAS-----RFGSTELVRILLQIAQ-RNSLDVDVDLALGFASHYCKIGTMECLVE  390 (629)
Q Consensus       324 gLlKsLIEgGa-D~------gnTPLL~AS-----~~GhLEVVKyLISIA~-knak~~DgdTpLi~AS~nGhLEVVKYLIS  390 (629)
                      .++++|++.|+ |.      |.|||++|+     .+|+.|+|++|+.... .+..+.+|+|||++|+.+|+.++||+|++
T Consensus       125 ~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~  204 (276)
T 4hbd_A          125 PVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLA  204 (276)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            46788888887 42      889999998     7788899999998854 55577788999999999999999999999


Q ss_pred             cC-Ccc----ccchHHHHHHHhCCchHHHHHHH-hCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          391 EG-NAV----AFLGPLMRAAERGCMQVVQWFVK-RGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       391 ~G-d~e----~G~TPLI~ASenGhLEVVKYLIS-~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      .| |++    .|+||||+|+++|+.++|++|++ .|++    +..|.|||+.|+..++.+++++|+++.
T Consensus       205 ~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          205 CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            99 544    78999999999999999999998 7886    567899999999999999999998764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.87  E-value=4.8e-23  Score=171.89  Aligned_cols=115  Identities=26%  Similarity=0.392  Sum_probs=104.2

Q ss_pred             CcchhHHHHhhcCCHHHHHHHHHHhh--hhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhC
Q 006847          336 NVNQCFLEASRFGSTELVRILLQIAQ--RNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERG  408 (629)
Q Consensus       336 ~gnTPLL~AS~~GhLEVVKyLISIA~--knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenG  408 (629)
                      .+.|||+.|+++|++|+|++|++...  .+..+.+|.|||++|+++|++++|++|++.| +++    .|.||||.|+++|
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   86 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG   86 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcC
Confidence            48899999999999999999998733  4556777889999999999999999999999 544    7999999999999


Q ss_pred             CchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          409 CMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       409 hLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      +.++|+||++.|++    +..|.|||+.|+..++.++++||+.+-.
T Consensus        87 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  132 (165)
T 3twr_A           87 HYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA  132 (165)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999996    5679999999999999999999998753

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.87  E-value=1.5e-22  Score=192.84  Aligned_cols=126  Identities=17%  Similarity=0.179  Sum_probs=96.8

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .++++|++.|+|.      |.|||++|+++|+.|+|++|++. ++.+..+.+|.|||++|+++|+.+++++|++.| +.+
T Consensus       226 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  305 (437)
T 1n11_A          226 EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD  305 (437)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC
Confidence            4667777777763      77888888888888888888876 456677777888888888888888888888877 333


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                          .|.||||.|+++|++++||||++.|++    +..|.|||+.|+..++.++|++|+.+.
T Consensus       306 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  367 (437)
T 1n11_A          306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG  367 (437)
T ss_dssp             CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCc
Confidence                678888888888888888888888875    446778888888888888888887764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=7e-23  Score=179.52  Aligned_cols=116  Identities=22%  Similarity=0.216  Sum_probs=102.1

Q ss_pred             CCcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhcc-C-Ccc----ccchHHHHHHHh
Q 006847          335 DNVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEE-G-NAV----AFLGPLMRAAER  407 (629)
Q Consensus       335 D~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~-G-d~e----~G~TPLI~ASen  407 (629)
                      +.|.|||++|+.+|++|+|++||+. ++.+..|.+|.||||+|+.+|+.++|++|++. | +++    .|+||||+|+++
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~  150 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK  150 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred             cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence            3589999999999999999999998 56888999999999999999999999999999 7 444    799999999999


Q ss_pred             CCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          408 GCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       408 GhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      |+.++|++|++.|++    +..|.|||+.|+..++.+++++|+..-.
T Consensus       151 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             CCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            999999999999996    6689999999999999999999987653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=1e-22  Score=164.15  Aligned_cols=106  Identities=18%  Similarity=0.231  Sum_probs=95.7

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCc
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCM  410 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhL  410 (629)
                      |+|||++|+++|+.|+|++||+. ++.+..|.+|+||||+|+++|+.++|++|++.| +++    .|+||||+|+++|+.
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~   86 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   86 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH
Confidence            78999999999999999999998 568889999999999999999999999999999 544    799999999999999


Q ss_pred             hHHHHHHHhCcc----ccccCchhhHhhhcChHHHH
Q 006847          411 QVVQWFVKRGCR----DMDLCLALTAATSSSQVEVA  442 (629)
Q Consensus       411 EVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVV  442 (629)
                      ++|++|++.|++    +..|.|||+.|...+..+++
T Consensus        87 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll  122 (123)
T 3aaa_C           87 SCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL  122 (123)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHHh
Confidence            999999999996    66899999999655544443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.87  E-value=3.2e-22  Score=171.45  Aligned_cols=128  Identities=20%  Similarity=0.185  Sum_probs=112.6

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCc-cceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCK-IGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGh-LEVVKYLIS~G-d~  394 (629)
                      .++++|++.|+|.      |.|||+.|+.+|+.|+|++|++. +..+..+.+|.|||++|+.+++ .+++++|++.| +.
T Consensus        90 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~  169 (240)
T 3eu9_A           90 SMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV  169 (240)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCc
Confidence            4678899999984      88999999999999999999998 5588899999999999997777 89999999999 43


Q ss_pred             c-----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCCh
Q 006847          395 V-----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       395 e-----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq  451 (629)
                      +     .|.|||+.|+++|+.++|+||++.|++    +..|.|||+.|+..++.+++++|+.+-..
T Consensus       170 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            3     688999999999999999999999996    56789999999999999999999876543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.87  E-value=2.9e-23  Score=182.34  Aligned_cols=113  Identities=17%  Similarity=0.108  Sum_probs=102.5

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc------c----ccchHHHHH
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA------V----AFLGPLMRA  404 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~------e----~G~TPLI~A  404 (629)
                      |+|||++|+.+|+.|+|++||+. ++.+..|.+|.|||++|+.+|+.++|++|++.| ++      +    .|.||||+|
T Consensus        45 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A  124 (236)
T 1ikn_D           45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA  124 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHH
Confidence            88999999999999999999998 668889999999999999999999999999988 31      1    699999999


Q ss_pred             HHhCCchHHHHHHHhCcc----cc-ccCchhhHhhhcChHHHHHhhhcCC
Q 006847          405 AERGCMQVVQWFVKRGCR----DM-DLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       405 SenGhLEVVKYLIS~GAd----d~-~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +.+|+.++|+||++.|++    +. .|.||||.|+..++.++++||+.+.
T Consensus       125 ~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  174 (236)
T 1ikn_D          125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG  174 (236)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999996    33 7899999999999999999999875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.87  E-value=2.8e-22  Score=175.39  Aligned_cols=127  Identities=24%  Similarity=0.215  Sum_probs=116.2

Q ss_pred             HHHHHHHhcCCCC----------------cchhHHHHhhcCCHHHHHHHHHH--hhhhcccCCcchhhHHhhhcCc----
Q 006847          324 GLLGLLVEGGADN----------------VNQCFLEASRFGSTELVRILLQI--AQRNSLDVDVDLALGFASHYCK----  381 (629)
Q Consensus       324 gLlKsLIEgGaD~----------------gnTPLL~AS~~GhLEVVKyLISI--A~knak~~DgdTpLi~AS~nGh----  381 (629)
                      .++++|++.|+|.                |.|||++|+.+|+.|+|++|++.  +..+..|.+|.|||++|+.+|+    
T Consensus       119 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  198 (285)
T 1wdy_A          119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV  198 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTH
T ss_pred             HHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchH
Confidence            5788999999873                67999999999999999999986  6688899999999999999999    


Q ss_pred             cceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHH-hCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          382 IGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVK-RGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       382 LEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS-~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      .+++++|++.| +++    .|.||||.|+++|++++|+||++ .|++    +..|.|||+.|+..++.++++||+.+..
T Consensus       199 ~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga  277 (285)
T 1wdy_A          199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA  277 (285)
T ss_dssp             HHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence            99999999999 544    79999999999999999999999 8886    5689999999999999999999998753

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.87  E-value=1.5e-22  Score=190.74  Aligned_cols=131  Identities=17%  Similarity=0.110  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHhcCCCC-------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCc---cceehhh
Q 006847          320 TVIQGLLGLLVEGGADN-------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCK---IGTMECL  388 (629)
Q Consensus       320 ~~iqgLlKsLIEgGaD~-------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGh---LEVVKYL  388 (629)
                      ..++.++++|++.|+|.       |+||||+|+++|++|+|++||+. |+.+.+|.+|+||||+|+.+||   .++++.|
T Consensus       107 ~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~l  186 (327)
T 1sw6_A          107 SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL  186 (327)
T ss_dssp             HHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHH
T ss_pred             hhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHH
Confidence            34677888999999863       89999999999999999999999 6699999999999999999999   8888888


Q ss_pred             hccC--Ccc----ccchHHHHHHH----hCCchHHHHHHHhCc-------------------------------------
Q 006847          389 VEEG--NAV----AFLGPLMRAAE----RGCMQVVQWFVKRGC-------------------------------------  421 (629)
Q Consensus       389 IS~G--d~e----~G~TPLI~ASe----nGhLEVVKYLIS~GA-------------------------------------  421 (629)
                      ++.|  +++    .|+||||+|++    .|+.++|++|++.|+                                     
T Consensus       187 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~  266 (327)
T 1sw6_A          187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL  266 (327)
T ss_dssp             HHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHC
T ss_pred             HHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHH
Confidence            8877  333    89999999999    899999999998742                                     


Q ss_pred             ------------cccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          422 ------------RDMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       422 ------------dd~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                                  .+..|.||||.|+..|+.++|++|+.+..
T Consensus       267 ~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga  307 (327)
T 1sw6_A          267 DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA  307 (327)
T ss_dssp             SHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence                        25679999999999999999999998853

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.87  E-value=1.8e-22  Score=171.52  Aligned_cols=115  Identities=22%  Similarity=0.139  Sum_probs=103.7

Q ss_pred             CCcchhHHHHhhcCCHHHHHHHHHH--hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHh
Q 006847          335 DNVNQCFLEASRFGSTELVRILLQI--AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAER  407 (629)
Q Consensus       335 D~gnTPLL~AS~~GhLEVVKyLISI--A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASen  407 (629)
                      ..+.+||+.|+++|++|+|++||+.  ...+..|.+|.|||++|+.+|+.++|++|++.| +++    .|.||||.|+.+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            3477899999999999999999997  347889999999999999999999999999999 554    799999999999


Q ss_pred             CCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          408 GCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       408 GhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      |+.++|++|++.|++    +..|.||||.|+..++.+++++|+.+.
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  128 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG  128 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            999999999999996    567999999999999999999999864

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=1.4e-22  Score=174.46  Aligned_cols=103  Identities=22%  Similarity=0.141  Sum_probs=94.0

Q ss_pred             CcchhHHHHhhcCCHHHHHHHHHHhhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc-----cccchHHHHHHHhCC
Q 006847          336 NVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA-----VAFLGPLMRAAERGC  409 (629)
Q Consensus       336 ~gnTPLL~AS~~GhLEVVKyLISIA~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~-----e~G~TPLI~ASenGh  409 (629)
                      .|.|||++|+++|+.|+|++||.-++.+.+|.+|.||||+|+.+|+.++|++|++.| ++     ..|+||||+|+.+|+
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~  122 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR  122 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTTTSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCc
Confidence            378999999999999999999996668889999999999999999999999999999 44     369999999999999


Q ss_pred             chHHHHHHHhCcc----ccccCchhhHhhhcCh
Q 006847          410 MQVVQWFVKRGCR----DMDLCLALTAATSSSQ  438 (629)
Q Consensus       410 LEVVKYLIS~GAd----d~~g~taL~tA~s~gq  438 (629)
                      .++|++|++.|++    +..|.|||+.|+..++
T Consensus       123 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~  155 (183)
T 3deo_A          123 PEVVEALVELGADIEVEDERGLTALELAREILK  155 (183)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc
Confidence            9999999999997    5679999998887743

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.86  E-value=2.5e-22  Score=168.60  Aligned_cols=113  Identities=20%  Similarity=0.176  Sum_probs=103.3

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHHhh--hhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCC
Q 006847          337 VNQCFLEASRFGSTELVRILLQIAQ--RNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGC  409 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISIA~--knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGh  409 (629)
                      +.|||+.|+.+|++|+|++||....  .+..|.+|+|||++|+.+|++++|++|++.| +++    .|.||||.|+.+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            3589999999999999999999833  6778999999999999999999999999999 544    79999999999999


Q ss_pred             chHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          410 MQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       410 LEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      .++|++|++.|++    +..|.||||.|+..++.+++++|+.+-
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  125 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG  125 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999997    567999999999999999999999874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.86  E-value=5e-23  Score=204.25  Aligned_cols=150  Identities=15%  Similarity=0.115  Sum_probs=119.1

Q ss_pred             HHHHHHHhcCCCCcchhHHHHhhcCCHHHHHHHHHHhhh----hcccCCcchhhHHhhhcCccceehhhhccC-C-----
Q 006847          324 GLLGLLVEGGADNVNQCFLEASRFGSTELVRILLQIAQR----NSLDVDVDLALGFASHYCKIGTMECLVEEG-N-----  393 (629)
Q Consensus       324 gLlKsLIEgGaD~gnTPLL~AS~~GhLEVVKyLISIA~k----nak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d-----  393 (629)
                      .++++|++.|+| ++|||++|+++|++|+|++||+....    +.++.+|+|||++|+++||+|+||||++.| |     
T Consensus        80 ~~~~~l~~~g~~-~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~  158 (376)
T 2aja_A           80 QLWSDAHKKGIK-SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM  158 (376)
T ss_dssp             THHHHHHHHTCC-HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH
T ss_pred             HHHHHHHHcCCC-cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccc
Confidence            356889998876 56999999999999999999988542    246667889999999999999999999999 4     


Q ss_pred             cc-ccchHHHHHHHhCCchHHHHHHHhCcc------ccccCchhhHhh-hcChHHHHHhhhcCCChhhhhHhHHHHHHHh
Q 006847          394 AV-AFLGPLMRAAERGCMQVVQWFVKRGCR------DMDLCLALTAAT-SSSQVEVAAYLLPHVPQHVLAALSIEILKAA  465 (629)
Q Consensus       394 ~e-~G~TPLI~ASenGhLEVVKYLIS~GAd------d~~g~taL~tA~-s~gq~eVVkYLLS~vPq~vl~alsieilkAA  465 (629)
                      .. .++||||.|+++||+||||||++.|++      +..|.|||+.|+ ..|+.|||+||+++.. .    ..+-+..||
T Consensus       159 i~~~~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-~----~~taL~~Aa  233 (376)
T 2aja_A          159 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-M----LAYAEIHEF  233 (376)
T ss_dssp             HSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-H----HHHHHHCTT
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-c----cchHHHHHH
Confidence            11 349999999999999999999999997      235899999999 9999999999999531 1    222222344


Q ss_pred             cccCCCCccceeehhhc
Q 006847          466 GERSGGSLDGVAFLLHS  482 (629)
Q Consensus       466 ~~rs~gs~~GV~flL~S  482 (629)
                      .   .|.++-|.+|+..
T Consensus       234 ~---~g~~evv~lL~~~  247 (376)
T 2aja_A          234 E---YGEKYVNPFIARH  247 (376)
T ss_dssp             T---TTTTTHHHHHHHH
T ss_pred             H---CCCHHHHHHHHhc
Confidence            3   5777777777653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.86  E-value=2.2e-22  Score=192.34  Aligned_cols=124  Identities=23%  Similarity=0.291  Sum_probs=65.2

Q ss_pred             HHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH----hhhhcccCCcchhhHHhhhcC---ccceehhhhcc
Q 006847          325 LLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI----AQRNSLDVDVDLALGFASHYC---KIGTMECLVEE  391 (629)
Q Consensus       325 LlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI----A~knak~~DgdTpLi~AS~nG---hLEVVKYLIS~  391 (629)
                      ++++|++.|+|.      |.|||++|+.+|++|+|++||+.    ++.+..|.+|.|||++|+.+|   ++++|++|++.
T Consensus       181 iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~  260 (373)
T 2fo1_E          181 LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK  260 (373)
T ss_dssp             HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC
Confidence            445555555552      55555555555555555555554    234445555555555555554   55555555555


Q ss_pred             C-Ccc------------ccchHHHHHHHhCCchHHHHHHHhC-cc----ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          392 G-NAV------------AFLGPLMRAAERGCMQVVQWFVKRG-CR----DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       392 G-d~e------------~G~TPLI~ASenGhLEVVKYLIS~G-Ad----d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                      | +++            .|.||||+|+++|++++|+||++.| ++    +..|.|||+.|+..|+.++|++|+.+
T Consensus       261 g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  335 (373)
T 2fo1_E          261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ  335 (373)
T ss_dssp             TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            5 222            3555555555555555555555544 32    33455555555555555555555544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.86  E-value=4.3e-22  Score=190.34  Aligned_cols=128  Identities=20%  Similarity=0.271  Sum_probs=112.1

Q ss_pred             HHHHHHHhcC---CC------CcchhHHHHhhcC---CHHHHHHHHHH-hhhh--------cccCCcchhhHHhhhcCcc
Q 006847          324 GLLGLLVEGG---AD------NVNQCFLEASRFG---STELVRILLQI-AQRN--------SLDVDVDLALGFASHYCKI  382 (629)
Q Consensus       324 gLlKsLIEgG---aD------~gnTPLL~AS~~G---hLEVVKyLISI-A~kn--------ak~~DgdTpLi~AS~nGhL  382 (629)
                      .++++|++.|   +|      .|.|||++|+.+|   +.|+|++|++. ++.+        ..|.+|.|||++|+.+|+.
T Consensus       213 ~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~  292 (373)
T 2fo1_E          213 GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM  292 (373)
T ss_dssp             HHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCH
T ss_pred             HHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCH
Confidence            5678888877   44      2999999999998   89999999999 3343        3677899999999999999


Q ss_pred             ceehhhhccC--Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCCh
Q 006847          383 GTMECLVEEG--NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       383 EVVKYLIS~G--d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq  451 (629)
                      ++|++|++.|  +++    .|.||||+|+++|++++|++|++.|++    +..|.|||+.|+.+++.+|++||+.+-|.
T Consensus       293 ~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          293 PIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             HHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            9999999886  333    799999999999999999999999996    56799999999999999999999998764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.85  E-value=1.1e-21  Score=168.13  Aligned_cols=126  Identities=21%  Similarity=0.205  Sum_probs=102.6

Q ss_pred             HHHHHHHhcCCCC-------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN-------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~-------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .++++|++.|++.       |.|||++|+.+|+.|+|++|++. ++.+..+.+|.|||++|+.+|+.+++++|++.| ++
T Consensus        56 ~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  135 (240)
T 3eu9_A           56 DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV  135 (240)
T ss_dssp             HHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc
Confidence            4677888888863       77888888888888888888887 557778888888888888888888888888888 44


Q ss_pred             c----ccchHHHHHHHhCC-chHHHHHHHhCcc----cc-ccCchhhHhhhcChHHHHHhhhcCC
Q 006847          395 V----AFLGPLMRAAERGC-MQVVQWFVKRGCR----DM-DLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       395 e----~G~TPLI~ASenGh-LEVVKYLIS~GAd----d~-~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +    .|.|||+.|+.+|+ .+++++|++.|++    +. .|.|||+.|+..++.+++++|+.+.
T Consensus       136 ~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  200 (240)
T 3eu9_A          136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG  200 (240)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            3    68888888887776 8888888888886    22 6778888888888888888888764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.85  E-value=4.1e-23  Score=187.10  Aligned_cols=128  Identities=15%  Similarity=0.022  Sum_probs=113.0

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc-
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA-  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~-  394 (629)
                      .++++|++.|+|.      |.|||++|+.+|++|+|++||+. |+.+..|.+|+|||++|+.+|+.++|++|++.| ++ 
T Consensus        35 ~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~  114 (229)
T 2vge_A           35 EVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF  114 (229)
T ss_dssp             HHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            5678899999984      99999999999999999999999 668999999999999999999999999999999 43 


Q ss_pred             ----cccchHHHHH--HHhCCchHHHHHHHhCcc------------------------------------ccccCchhhH
Q 006847          395 ----VAFLGPLMRA--AERGCMQVVQWFVKRGCR------------------------------------DMDLCLALTA  432 (629)
Q Consensus       395 ----e~G~TPLI~A--SenGhLEVVKYLIS~GAd------------------------------------d~~g~taL~t  432 (629)
                          ..|.|||+.|  +.+|+.++|+||++.|++                                    |..|.|||+.
T Consensus       115 ~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~  194 (229)
T 2vge_A          115 ATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWW  194 (229)
T ss_dssp             CCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEE
T ss_pred             cccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccccccccccCCCcccHHHH
Confidence                2799999999  999999999999998763                                    3348899999


Q ss_pred             hhhcChHHHHHh-hhcCCCh
Q 006847          433 ATSSSQVEVAAY-LLPHVPQ  451 (629)
Q Consensus       433 A~s~gq~eVVkY-LLS~vPq  451 (629)
                      |+..|+.++|+. +++-+|+
T Consensus       195 A~~~g~~~~v~~~~l~~~p~  214 (229)
T 2vge_A          195 AALHGQEGYVPRNYFGLFPR  214 (229)
T ss_dssp             EEETTEEEEEEGGGEESSCC
T ss_pred             HHHcCCcceeehhhhhhCCC
Confidence            999999998875 5555554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.85  E-value=6.3e-23  Score=203.51  Aligned_cols=123  Identities=18%  Similarity=0.118  Sum_probs=105.7

Q ss_pred             HHHHHHHhcCC------C---CcchhHHHHhhcCCHHHHHHHHHHhh----hhcccCCcchhhHHhhhcCccceehhhhc
Q 006847          324 GLLGLLVEGGA------D---NVNQCFLEASRFGSTELVRILLQIAQ----RNSLDVDVDLALGFASHYCKIGTMECLVE  390 (629)
Q Consensus       324 gLlKsLIEgGa------D---~gnTPLL~AS~~GhLEVVKyLISIA~----knak~~DgdTpLi~AS~nGhLEVVKYLIS  390 (629)
                      ..+++|++.|+      +   .++|||++|+++||+|+|++||+...    .+..+.+ .|||++|+.+||+|+||+|++
T Consensus       106 e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~  184 (376)
T 2aja_A          106 SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCE  184 (376)
T ss_dssp             HHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHH
Confidence            57889999998      3   28899999999999999999999852    2223333 899999999999999999999


Q ss_pred             cC-C-----cc-ccchHHHHHH-HhCCchHHHHHHHhCccccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          391 EG-N-----AV-AFLGPLMRAA-ERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       391 ~G-d-----~e-~G~TPLI~AS-enGhLEVVKYLIS~GAdd~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      .| +     ++ .|.||||.|+ ++||+||||||++.|++   +.|||+.|+..|+.||++||+++..
T Consensus       185 ~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~---~~taL~~Aa~~g~~evv~lL~~~ga  249 (376)
T 2aja_A          185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---LAYAEIHEFEYGEKYVNPFIARHVN  249 (376)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH---HHHHHHCTTTTTTTTHHHHHHHHHH
T ss_pred             cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc---cchHHHHHHHCCCHHHHHHHHhcCc
Confidence            99 6     33 6999999999 99999999999998864   8999999999999999999998753

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=3.4e-22  Score=181.23  Aligned_cols=114  Identities=23%  Similarity=0.136  Sum_probs=103.0

Q ss_pred             CcchhHHHHhhcCCHHHHHHHHHHhhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-----ccchHHHHHHHhCC
Q 006847          336 NVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-----AFLGPLMRAAERGC  409 (629)
Q Consensus       336 ~gnTPLL~AS~~GhLEVVKyLISIA~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-----~G~TPLI~ASenGh  409 (629)
                      .|.|||++|+++|++++|++||+-++.+..|.+|.||||+|+.+||.++|++|++.| +++     .|+||||.|+.+|+
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~  123 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR  123 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            389999999999999999999996668899999999999999999999999999999 543     59999999999999


Q ss_pred             chHHHHHHHhCcc----ccccCchhhHhh----------------hcChHHHHHhhhcCC
Q 006847          410 MQVVQWFVKRGCR----DMDLCLALTAAT----------------SSSQVEVAAYLLPHV  449 (629)
Q Consensus       410 LEVVKYLIS~GAd----d~~g~taL~tA~----------------s~gq~eVVkYLLS~v  449 (629)
                      .++|++|++.|++    +..|.|||+.|+                ..|+.+++++|+.+.
T Consensus       124 ~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          124 PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            9999999999997    567888888887                678889999998764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.85  E-value=1.1e-21  Score=180.87  Aligned_cols=120  Identities=22%  Similarity=0.159  Sum_probs=107.9

Q ss_pred             HHHhcCCCCcchhHHHHhhcCCHHHHHHHHHHh--hhhcccCCcchhhHHhh-----hcCccceehhhhccC-Ccc----
Q 006847          328 LLVEGGADNVNQCFLEASRFGSTELVRILLQIA--QRNSLDVDVDLALGFAS-----HYCKIGTMECLVEEG-NAV----  395 (629)
Q Consensus       328 sLIEgGaD~gnTPLL~AS~~GhLEVVKyLISIA--~knak~~DgdTpLi~AS-----~nGhLEVVKYLIS~G-d~e----  395 (629)
                      ++++.--..|+|||++|+.+|+.|+|++||+..  ..+..|.+|.|||++|+     .+++++++++|++.| +.+    
T Consensus       102 ~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~  181 (276)
T 4hbd_A          102 YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQ  181 (276)
T ss_dssp             HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTT
T ss_pred             hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCC
Confidence            334433335999999999999999999999994  68889999999999999     889999999999999 222    


Q ss_pred             ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhc
Q 006847          396 AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLP  447 (629)
Q Consensus       396 ~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS  447 (629)
                      .|.||||.|+.+|+.++||+|++.|++    +..|.|||+.|+..++.++++||+.
T Consensus       182 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          182 AGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA  237 (276)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence            699999999999999999999999996    6689999999999999999999997

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.85  E-value=1.7e-21  Score=175.05  Aligned_cols=114  Identities=26%  Similarity=0.240  Sum_probs=106.1

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCc
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCM  410 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhL  410 (629)
                      +.|||+.|+.+|++|+|++||+. ++.+..|.+|.|||++|+.+|++++|++|++.| +++    .|+||||.|+.+|+.
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~  119 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL  119 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Confidence            78999999999999999999998 568889999999999999999999999999999 554    699999999999999


Q ss_pred             hHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          411 QVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       411 EVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      ++|+||++.|++    +..|.|||+.|+..++.+++++|+..-+
T Consensus       120 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~  163 (299)
T 1s70_B          120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG  163 (299)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcC
Confidence            999999999996    5679999999999999999999987543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.84  E-value=4.7e-22  Score=176.90  Aligned_cols=126  Identities=10%  Similarity=0.023  Sum_probs=110.3

Q ss_pred             HHHHHhcCCCC-----cchhHHHHhhcCCH----HHHHHHHHH-hhhhcccCCcchhhHHhhhcCc------cceehhhh
Q 006847          326 LGLLVEGGADN-----VNQCFLEASRFGST----ELVRILLQI-AQRNSLDVDVDLALGFASHYCK------IGTMECLV  389 (629)
Q Consensus       326 lKsLIEgGaD~-----gnTPLL~AS~~GhL----EVVKyLISI-A~knak~~DgdTpLi~AS~nGh------LEVVKYLI  389 (629)
                      ++.|++.|.+.     |.||||+|+.+|+.    |+|++||+. |+.|.+|.+|.||||+|+.+|+      +++|++||
T Consensus        22 ~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll  101 (186)
T 3t8k_A           22 FLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL  101 (186)
T ss_dssp             HHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHH
Confidence            45667777664     89999999999975    599999999 6699999999999999999998      67899999


Q ss_pred             ccC-Ccc----ccc-hHHHHHHHhC-----CchHHHHHHH-hCcc----ccccCchhhHhhhcChHHHHHhhhcCCCh
Q 006847          390 EEG-NAV----AFL-GPLMRAAERG-----CMQVVQWFVK-RGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       390 S~G-d~e----~G~-TPLI~ASenG-----hLEVVKYLIS-~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq  451 (629)
                      +.| |++    .|. ||||.|+.+|     +.++|++|++ .|++    +..|.|||+.|...++.++|+||+..+.+
T Consensus       102 ~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          102 EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             HTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999 555    688 9999999954     5679999999 9997    66899999999999999999999876543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.4e-21  Score=151.66  Aligned_cols=87  Identities=28%  Similarity=0.347  Sum_probs=79.8

Q ss_pred             CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCC
Q 006847          336 NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGC  409 (629)
Q Consensus       336 ~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGh  409 (629)
                      +|+|||++|+.+|+.|+|++||+. ++.+.+|.+|+|||++|+.+|+.++|++|++.| +++    .|.|||++|+++|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            378999999999999999999998 668899999999999999999999999999999 544    79999999999999


Q ss_pred             chHHHHHHHhCcc
Q 006847          410 MQVVQWFVKRGCR  422 (629)
Q Consensus       410 LEVVKYLIS~GAd  422 (629)
                      .++|+||++.||+
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999985

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.84  E-value=5.1e-22  Score=177.99  Aligned_cols=116  Identities=16%  Similarity=0.097  Sum_probs=78.0

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHHhhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCch
Q 006847          337 VNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQ  411 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISIA~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLE  411 (629)
                      |.|||+.|++.|+.++|+.||+....-..+..+.|||++|+.+|++++|++|++.| +++    .|.||||+|+.+|+++
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~   84 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTE   84 (239)
T ss_dssp             --------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHH
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            88999999999999999999999654445677899999999999999999999999 554    7999999999999999


Q ss_pred             HHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChh
Q 006847          412 VVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQH  452 (629)
Q Consensus       412 VVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~  452 (629)
                      +|++|++.|++    +..|.||||.|+..++.+++++|+.+.+..
T Consensus        85 ~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  129 (239)
T 1ycs_B           85 IVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV  129 (239)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            99999999996    568999999999999999999999886543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.84  E-value=6.1e-21  Score=176.47  Aligned_cols=125  Identities=22%  Similarity=0.264  Sum_probs=107.6

Q ss_pred             HHHHHHHhcCCCC-------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN-------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~-------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .++|+||+.|||.       |.|||++|+++|+.|+|++||+. |..+..+.++.+|++++...++.++++++++.| +.
T Consensus        39 ~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (337)
T 4g8k_A           39 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV  118 (337)
T ss_dssp             HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchh
Confidence            3778888888873       77888888888888888888888 557788888888888888888888888888888 44


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc--------------ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR--------------DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd--------------d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                      +    .|.|||+.|+..|+.++|++|++.|++              +..|.|||+.|+..|+.++|+||+.+
T Consensus       119 ~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~  190 (337)
T 4g8k_A          119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE  190 (337)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc
Confidence            3    799999999999999999999999996              23589999999999999999999964

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.84  E-value=1.8e-21  Score=159.88  Aligned_cols=99  Identities=20%  Similarity=0.153  Sum_probs=92.0

Q ss_pred             HHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCC-cchhhHHhhhcCccceehhhhccC-C
Q 006847          323 QGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVD-VDLALGFASHYCKIGTMECLVEEG-N  393 (629)
Q Consensus       323 qgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~D-gdTpLi~AS~nGhLEVVKYLIS~G-d  393 (629)
                      ..++++|++.|+|.      |.|||++|+. |+.|+|++||+. ++.+.+|.+ |+|||++|+.+|+.++|++|++.| +
T Consensus        25 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  103 (136)
T 1d9s_A           25 VETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR  103 (136)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            35788999999984      9999999999 999999999998 668899999 999999999999999999999999 5


Q ss_pred             cc----ccchHHHHHHHhCCchHHHHHHHhCcc
Q 006847          394 AV----AFLGPLMRAAERGCMQVVQWFVKRGCR  422 (629)
Q Consensus       394 ~e----~G~TPLI~ASenGhLEVVKYLIS~GAd  422 (629)
                      ++    .|.|||++|+++|+.++|+||++.|||
T Consensus       104 ~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          104 LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44    799999999999999999999999986

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.83  E-value=1.2e-21  Score=164.25  Aligned_cols=110  Identities=19%  Similarity=0.090  Sum_probs=89.8

Q ss_pred             HHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcch-hhHHhhhcCccceehhhhccC-C
Q 006847          323 QGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDL-ALGFASHYCKIGTMECLVEEG-N  393 (629)
Q Consensus       323 qgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdT-pLi~AS~nGhLEVVKYLIS~G-d  393 (629)
                      ..++++|++.|+|.      |+|||++|+ +|+.|+|++||+. ++.+.+|.+|.| |||+|+++|+.++|++|++.| +
T Consensus        25 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~  103 (156)
T 1bi7_B           25 VEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR  103 (156)
T ss_dssp             HHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCC
Confidence            35788999999984      999999985 9999999999998 568899999999 999999999999999999999 5


Q ss_pred             cc----ccchHHHHHHHhCCchHHHHHHHhCccc----cccCchhhHh
Q 006847          394 AV----AFLGPLMRAAERGCMQVVQWFVKRGCRD----MDLCLALTAA  433 (629)
Q Consensus       394 ~e----~G~TPLI~ASenGhLEVVKYLIS~GAdd----~~g~taL~tA  433 (629)
                      ++    .|.|||++|+++|+.++|+||++.|++-    ..|.||+..+
T Consensus       104 ~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          104 LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            44    7999999999999999999999999973    4566666543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.83  E-value=8.1e-21  Score=148.93  Aligned_cols=99  Identities=29%  Similarity=0.384  Sum_probs=91.8

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .++++|++.|+|.      |.|||++|+.+|+.|+|++|++. ++.+..|.+|+|||++|+.+|+.+++++|++.| +++
T Consensus        16 ~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~   95 (126)
T 1n0r_A           16 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN   95 (126)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc
Confidence            5778999999984      89999999999999999999998 558889999999999999999999999999999 543


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR  422 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd  422 (629)
                          .|.|||+.|+++|+.++|+||++.|||
T Consensus        96 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           96 AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                799999999999999999999999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.82  E-value=1.2e-20  Score=154.82  Aligned_cols=97  Identities=21%  Similarity=0.189  Sum_probs=90.0

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .++++|++.|+|.      |+|||++|+.+|+.|+|++||+. ++.+.+|.+|+|||++|+.+|+.++|++|++.| +.+
T Consensus        28 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  107 (136)
T 2jab_A           28 DEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN  107 (136)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            5788999999984      99999999999999999999999 568889999999999999999999999999999 543


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhC
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRG  420 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~G  420 (629)
                          .|.|||+.|+++|+.++|++|++.|
T Consensus       108 ~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          108 AQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                7999999999999999999999987

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.82  E-value=6.7e-21  Score=179.57  Aligned_cols=114  Identities=14%  Similarity=0.026  Sum_probs=100.6

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCC---HHHHHHHHHH--hhhhcccCCcchhhHHhhh----cCccceehhh
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGS---TELVRILLQI--AQRNSLDVDVDLALGFASH----YCKIGTMECL  388 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~Gh---LEVVKyLISI--A~knak~~DgdTpLi~AS~----nGhLEVVKYL  388 (629)
                      .++++|++.|+|.      |+||||+|+.+|+   .++|+.||..  ++.+.+|.+|+||||+|++    +|+.++|++|
T Consensus       145 ~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~L  224 (327)
T 1sw6_A          145 ELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY  224 (327)
T ss_dssp             HHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHH
Confidence            5688999999994      9999999999999   7888888887  5688999999999999999    9999999999


Q ss_pred             hccC----------------------------------------------Ccc----ccchHHHHHHHhCCchHHHHHHH
Q 006847          389 VEEG----------------------------------------------NAV----AFLGPLMRAAERGCMQVVQWFVK  418 (629)
Q Consensus       389 IS~G----------------------------------------------d~e----~G~TPLI~ASenGhLEVVKYLIS  418 (629)
                      ++.|                                              +++    .|+||||+|+++|+.++|++|++
T Consensus       225 l~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~  304 (327)
T 1sw6_A          225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD  304 (327)
T ss_dssp             HHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            8763                                              122    79999999999999999999999


Q ss_pred             hCcc----ccccCchhhHhhhcC
Q 006847          419 RGCR----DMDLCLALTAATSSS  437 (629)
Q Consensus       419 ~GAd----d~~g~taL~tA~s~g  437 (629)
                      .||+    +..|.|||+.|+..|
T Consensus       305 ~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          305 YGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TTCCTTCCCTTSCCGGGGTCC--
T ss_pred             cCCCCcccCCCCCCHHHHHHhcC
Confidence            9997    668999999998765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.81  E-value=1.9e-20  Score=177.71  Aligned_cols=113  Identities=16%  Similarity=0.095  Sum_probs=95.7

Q ss_pred             HHHHHHhcCCC------------CcchhHHHHhhc---CCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhh
Q 006847          325 LLGLLVEGGAD------------NVNQCFLEASRF---GSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECL  388 (629)
Q Consensus       325 LlKsLIEgGaD------------~gnTPLL~AS~~---GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYL  388 (629)
                      .++.|++.|+|            .|.|||++|+++   |++|+|++||+. |+.+.+|.+|+||||+|+.+|+.++|++|
T Consensus       166 ~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~L  245 (301)
T 2b0o_E          166 SVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL  245 (301)
T ss_dssp             HHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            35567788877            278999999998   999999999999 66899999999999999999999999999


Q ss_pred             hccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCccccccCchhhHhhhcChH
Q 006847          389 VEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQV  439 (629)
Q Consensus       389 IS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAdd~~g~taL~tA~s~gq~  439 (629)
                      ++.| |++    .|.|||++|+++|+.++|++|++.|++  .|.|||+.|+.+|+-
T Consensus       246 l~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          246 LKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--TTSSCCC--------
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--CCCChhHHHHhcCCc
Confidence            9999 554    799999999999999999999999997  578999999998873

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.78  E-value=1.2e-19  Score=140.82  Aligned_cols=82  Identities=24%  Similarity=0.302  Sum_probs=75.2

Q ss_pred             CcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcCh
Q 006847          368 DVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQ  438 (629)
Q Consensus       368 DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq  438 (629)
                      +|+||||+|+++|+++++++|++.| +++    .|+||||+|+.+|+.++|+||++.|++    +..|.|||+.|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            5899999999999999999999999 554    799999999999999999999999997    6679999999999999


Q ss_pred             HHHHHhhhcCC
Q 006847          439 VEVAAYLLPHV  449 (629)
Q Consensus       439 ~eVVkYLLS~v  449 (629)
                      .++++||+.+.
T Consensus        81 ~~~~~~Ll~~g   91 (93)
T 1n0q_A           81 LEVVKLLLEAG   91 (93)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            99999999763

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.77  E-value=3.1e-19  Score=167.33  Aligned_cols=113  Identities=11%  Similarity=-0.021  Sum_probs=99.7

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHHhh-------hhcccCCcchhhHHhhhc---CccceehhhhccC-Ccc----ccchHH
Q 006847          337 VNQCFLEASRFGSTELVRILLQIAQ-------RNSLDVDVDLALGFASHY---CKIGTMECLVEEG-NAV----AFLGPL  401 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISIA~-------knak~~DgdTpLi~AS~n---GhLEVVKYLIS~G-d~e----~G~TPL  401 (629)
                      ..++|+.|+..|.++.|++|++...       .+..+.+|.||||+|+.+   |++++|++|++.| |++    .|+|||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            4579999999999999999998732       223477899999999999   9999999999999 554    799999


Q ss_pred             HHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          402 MRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       402 I~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      |+|+.+|+.++|++|++.|++    +..|.|||+.|+..++.+++++|+.+.
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999996    668999999999999999999998753

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.77  E-value=3.2e-19  Score=169.34  Aligned_cols=222  Identities=16%  Similarity=0.142  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHhhhcCCcchhhhhhhhhhhHhHHHH---------HHhhccccccCCCCCCCC---cchHHHHHHHHHHH
Q 006847          208 VTVMAQRLNERLQECNGDEVLKAEAGAKVQKFTEWA---------LRCIGFHSRCNDNCDAVS---HSSAVEIQLQLSAF  275 (629)
Q Consensus       208 v~vmaqrlherlqe~ngde~lkaea~akvqkftewa---------lkcig~hsr~~~~~~~~~---~~s~~e~qlqlsaf  275 (629)
                      ..-..+++-++|+.-+|+..- |+-|++-   .+||         ++|-|.|..-...-.++.   .+.-...+++++  
T Consensus        25 ~~~~~~~~~~~~~~~~~n~~c-~dc~~~~---p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~--   98 (301)
T 2b0o_E           25 PHDLTKLLIAEVKSRPGNSQC-CDCGAAD---PTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLA--   98 (301)
T ss_dssp             --CHHHHHHHHHHTSTTTTBC-TTTCCBS---CCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH--
T ss_pred             HHHHHHHHHHHHhcCCCCCcC-CCCCCCC---CCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHH--
Confidence            444455666667777776544 5555542   4676         589999954322222221   121122233222  


Q ss_pred             HHHHhhhCCCCCccchHHHHhhccchhhhhcccCCCCccccchHHHHHHHHH--HHHhcCCCC---cchhHHHHhhcCCH
Q 006847          276 KTFLDLAGNQLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATVIQGLLG--LLVEGGADN---VNQCFLEASRFGST  350 (629)
Q Consensus       276 k~fldlagn~Ltgk~fteafdaaCfpltlfs~~~~pgwasG~sa~~iqgLlK--sLIEgGaD~---gnTPLL~AS~~GhL  350 (629)
                         .. .||.    .+.+.+.+ .+|-   .....|.-.+.+  .....+++  |.-+....+   ..++|+.|+.+|++
T Consensus        99 ---~~-~GN~----~~n~i~E~-~l~~---~~~~kP~~~s~~--~~r~~~I~~Ky~~~~f~~~~~~~~~~L~~A~~~g~~  164 (301)
T 2b0o_E           99 ---LN-MGNT----SFNEVMEA-QLPS---HGGPKPSAESDM--GTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDL  164 (301)
T ss_dssp             ---HH-CCHH----HHHHHHTT-TCCS---SSCSCCCTTCCH--HHHHHHHHHHHTSCTTSCCCC-CHHHHHHHHHTTCH
T ss_pred             ---HH-cCCH----HHHHHHHH-hhhh---ccCCCCCCcccH--HHHHHHHHHHHHhhhhhcccCchHHHHhhhhhccCH
Confidence               11 2444    33333332 2221   112234322332  22333322  332222222   45789999999999


Q ss_pred             HHHHHHHHH-hhhhc------ccCCcchhhHHhhhc---CccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHH
Q 006847          351 ELVRILLQI-AQRNS------LDVDVDLALGFASHY---CKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQW  415 (629)
Q Consensus       351 EVVKyLISI-A~kna------k~~DgdTpLi~AS~n---GhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKY  415 (629)
                      +.|++||.. ++.+.      .+.+|+||||+|+.+   |++++|++|++.| |++    .|+||||+|+.+|+.++|++
T Consensus       165 ~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~  244 (301)
T 2b0o_E          165 LSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL  244 (301)
T ss_dssp             HHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999977 44555      588899999999998   9999999999999 544    79999999999999999999


Q ss_pred             HHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          416 FVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       416 LIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      |++.|++    |..|.|||+.|+..++.+++++|+.+.
T Consensus       245 Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g  282 (301)
T 2b0o_E          245 LLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ  282 (301)
T ss_dssp             HHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            9999997    667999999999999999999998754

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=1.9e-19  Score=143.10  Aligned_cols=87  Identities=22%  Similarity=0.240  Sum_probs=80.9

Q ss_pred             CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCC
Q 006847          336 NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGC  409 (629)
Q Consensus       336 ~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGh  409 (629)
                      .|.|||++|+.+|+.|+|++||+. ++.+.+|.+|.|||++|+.+|+.++|++|++.| +.+    .|.|||+.|+.+|+
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~   87 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH   87 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCC
Confidence            489999999999999999999998 558889999999999999999999999999999 543    79999999999999


Q ss_pred             chHHHHHHHhCcc
Q 006847          410 MQVVQWFVKRGCR  422 (629)
Q Consensus       410 LEVVKYLIS~GAd  422 (629)
                      .++|++|++.|++
T Consensus        88 ~~~~~~Ll~~ga~  100 (115)
T 2l6b_A           88 HEIVKLLDAKGAD  100 (115)
T ss_dssp             HHHHHHHHTTSSS
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999997

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.77  E-value=3.2e-19  Score=176.94  Aligned_cols=113  Identities=25%  Similarity=0.197  Sum_probs=104.9

Q ss_pred             cchhHHHHhhc-CCHHHHHHHHHH-hhhhccc--CCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHh
Q 006847          337 VNQCFLEASRF-GSTELVRILLQI-AQRNSLD--VDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAER  407 (629)
Q Consensus       337 gnTPLL~AS~~-GhLEVVKyLISI-A~knak~--~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASen  407 (629)
                      +.|||+.|+.+ |++|+|++||.. ++.+..+  .+|.||||+|+.+|++++|++|++.| |++    .|+||||+|+.+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            67999999999 999999999998 5688877  88999999999999999999999999 554    799999999999


Q ss_pred             CCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          408 GCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       408 GhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      |+.++|++|++.|++    +..|.|||+.|+..++.++++||+.+.
T Consensus       279 g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999997    668999999999999999999998654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.76  E-value=5.1e-19  Score=165.84  Aligned_cols=98  Identities=15%  Similarity=0.036  Sum_probs=88.8

Q ss_pred             HHHHHhcCCC------------CcchhHHHHhhc---CCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhh
Q 006847          326 LGLLVEGGAD------------NVNQCFLEASRF---GSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLV  389 (629)
Q Consensus       326 lKsLIEgGaD------------~gnTPLL~AS~~---GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLI  389 (629)
                      ++.|++.|+|            .|.||||+|+++   |++|+|++||+. |+.+.+|.+|+||||+|+.+|+.++|++|+
T Consensus       146 ~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll  225 (278)
T 1dcq_A          146 LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL  225 (278)
T ss_dssp             HHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3455666665            489999999999   999999999999 679999999999999999999999999999


Q ss_pred             ccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCccc
Q 006847          390 EEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCRD  423 (629)
Q Consensus       390 S~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAdd  423 (629)
                      +.| |++    .|.|||++|+++|+.++|++|++.|+++
T Consensus       226 ~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999 555    8999999999999999999999999964

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.74  E-value=1.3e-18  Score=154.73  Aligned_cols=110  Identities=10%  Similarity=0.035  Sum_probs=96.0

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHHhhhhccc-CCcchhhHHhhhcCcc----ceehhhhccC-Ccc----ccchHHHHHHH
Q 006847          337 VNQCFLEASRFGSTELVRILLQIAQRNSLD-VDVDLALGFASHYCKI----GTMECLVEEG-NAV----AFLGPLMRAAE  406 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISIA~knak~-~DgdTpLi~AS~nGhL----EVVKYLIS~G-d~e----~G~TPLI~ASe  406 (629)
                      ++++|+.|++.|.+|.|+.|+... .+.++ .+|+||||+|+.+|+.    ++|++||+.| |++    .|+||||+|+.
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~-~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG-YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS-SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            578999999999999999998764 44455 7799999999999975    5999999999 555    79999999999


Q ss_pred             hCC------chHHHHHHHhCcc----ccccC-chhhHhhhcC-----hHHHHHhhhc
Q 006847          407 RGC------MQVVQWFVKRGCR----DMDLC-LALTAATSSS-----QVEVAAYLLP  447 (629)
Q Consensus       407 nGh------LEVVKYLIS~GAd----d~~g~-taL~tA~s~g-----q~eVVkYLLS  447 (629)
                      .|+      +++|++|++.||+    |..|. ||||.|+..+     +.+++++|+.
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~  141 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS  141 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT
T ss_pred             cCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH
Confidence            997      6899999999997    66799 9999999944     4679999988

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.72  E-value=6.1e-19  Score=154.58  Aligned_cols=100  Identities=14%  Similarity=0.075  Sum_probs=85.0

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH--hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI--AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI--A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      .++++|++.|+|.      |+|||++|+.+|+.|+|++||+.  ++.+.+|.+|+|||++|+.+|+.++|++|++.| ++
T Consensus        87 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  166 (222)
T 3ehr_A           87 SWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART  166 (222)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS
T ss_pred             HHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4788999999984      99999999999999999999986  568889999999999999999999999999999 55


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCccc
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCRD  423 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAdd  423 (629)
                      +    .|.|||++|+.+|+.++|++|++.|+..
T Consensus       167 ~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          167 DLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             CCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             ccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            4    8999999999999999999999999964

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.71  E-value=1e-17  Score=136.73  Aligned_cols=87  Identities=22%  Similarity=0.247  Sum_probs=80.2

Q ss_pred             cccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhh
Q 006847          364 SLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAAT  434 (629)
Q Consensus       364 ak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~  434 (629)
                      ..|.+|+|||++|+.+|++++|++|++.| +++    .|.||||.|+++|+.++|+||++.|++    +..|.||||.|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            46888999999999999999999999999 544    799999999999999999999999996    567999999999


Q ss_pred             hcChHHHHHhhhcCCC
Q 006847          435 SSSQVEVAAYLLPHVP  450 (629)
Q Consensus       435 s~gq~eVVkYLLS~vP  450 (629)
                      ..++.+++++|+.+..
T Consensus        85 ~~~~~~~v~~Ll~~ga  100 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGA  100 (137)
T ss_dssp             HTTCHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHcCC
Confidence            9999999999998753

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.69  E-value=1.2e-17  Score=134.46  Aligned_cols=87  Identities=20%  Similarity=0.264  Sum_probs=77.3

Q ss_pred             ccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhh
Q 006847          365 LDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATS  435 (629)
Q Consensus       365 k~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s  435 (629)
                      .+..|+|||++|+++|++++|++|++.| +++    .|+||||+|+.+|+.++|+||++.|++    +..|.||||.|+.
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            4667899999999999999999999999 444    799999999999999999999999996    6679999999999


Q ss_pred             cChHHHHHhhhcCCCh
Q 006847          436 SSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       436 ~gq~eVVkYLLS~vPq  451 (629)
                      .++.++++||+.+-+.
T Consensus        83 ~~~~~~v~~Ll~~ga~   98 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGAD   98 (123)
T ss_dssp             HTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            9999999999988643

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.69  E-value=1.2e-17  Score=132.61  Aligned_cols=87  Identities=18%  Similarity=0.163  Sum_probs=80.8

Q ss_pred             ccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhh
Q 006847          365 LDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATS  435 (629)
Q Consensus       365 k~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s  435 (629)
                      +|.+|.|||++|+.+|+++++++|++.| +++    .|.||||.|+.+|+.++|+||++.|++    +..|.|||+.|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            6889999999999999999999999999 543    799999999999999999999999997    5679999999999


Q ss_pred             cChHHHHHhhhcCCCh
Q 006847          436 SSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       436 ~gq~eVVkYLLS~vPq  451 (629)
                      .++.+++++|+++...
T Consensus        85 ~~~~~~~~~Ll~~ga~  100 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGAD  100 (115)
T ss_dssp             TTCHHHHHHHHTTSSS
T ss_pred             CCCHHHHHHHHHcCCC
Confidence            9999999999988643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.68  E-value=2.2e-17  Score=142.09  Aligned_cols=112  Identities=25%  Similarity=0.164  Sum_probs=100.1

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhccc-CCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLD-VDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~-~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      ..+++|++ |+|.      |.||||+|+.+|+.|+|++||+. ++.+..+ .+|+||||+|+.+|+.++|++|++.| ++
T Consensus        58 ~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  136 (183)
T 3deo_A           58 QALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI  136 (183)
T ss_dssp             HHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred             HHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC
Confidence            46788888 8874      99999999999999999999999 5688888 89999999999999999999999999 54


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCccccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAdd~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +    .|.|||+.|++.++.             ..+.++|+.|...++.+++++|.+++
T Consensus       137 ~~~d~~g~tpl~~A~~~~~~-------------~~~~~~l~~a~~~~~~~i~~~L~~~~  182 (183)
T 3deo_A          137 EVEDERGLTALELAREILKT-------------TPKGNPMQFGRRIGLEKVINVLEGQV  182 (183)
T ss_dssp             TCCCTTSCCHHHHHHHHHHT-------------CCCCSHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCCCCHHHHHHHhccC-------------cccccHHHHHHHcCHHHHHHHHHHhh
Confidence            4    899999999987654             34578999999999999999999875

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.68  E-value=2.3e-17  Score=132.65  Aligned_cols=80  Identities=21%  Similarity=0.273  Sum_probs=40.3

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCc
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCM  410 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhL  410 (629)
                      |.|||++|+.+|+.|+|++||+. ++.+.+|.+|+|||++|+.+|+.++|++|++.| +.+    .|.|||++|+.+|+.
T Consensus        24 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~  103 (110)
T 2zgd_A           24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNE  103 (110)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCH
Confidence            44555555555555555555544 334444555555555555555555555555555 222    345555555555555


Q ss_pred             hHHHHH
Q 006847          411 QVVQWF  416 (629)
Q Consensus       411 EVVKYL  416 (629)
                      ++|++|
T Consensus       104 ~~~~~L  109 (110)
T 2zgd_A          104 DLAEIL  109 (110)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.68  E-value=1.7e-17  Score=150.40  Aligned_cols=98  Identities=27%  Similarity=0.243  Sum_probs=86.9

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhccc-CCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLD-VDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~-~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      ..+++|++ |+|.      |.||||+|+.+|+.|+|++||+. |+.+..+ .+|+||||+|+.+|+.++|++|++.| ++
T Consensus        59 ~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  137 (244)
T 3ui2_A           59 QALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI  137 (244)
T ss_dssp             HHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            46778888 8874      99999999999999999999999 6688888 88999999999999999999999999 55


Q ss_pred             c----ccchHHHHHH----------------HhCCchHHHHHHHhCcc
Q 006847          395 V----AFLGPLMRAA----------------ERGCMQVVQWFVKRGCR  422 (629)
Q Consensus       395 e----~G~TPLI~AS----------------enGhLEVVKYLIS~GAd  422 (629)
                      +    .|.|||+.|+                +.|+.++|++|.+.+.+
T Consensus       138 ~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          138 EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             TCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            4    6888887777                77999999999998775

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.68  E-value=3e-17  Score=162.88  Aligned_cols=115  Identities=20%  Similarity=0.086  Sum_probs=90.9

Q ss_pred             HHHHHHHhcCCCC--------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-C
Q 006847          324 GLLGLLVEGGADN--------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-N  393 (629)
Q Consensus       324 gLlKsLIEgGaD~--------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d  393 (629)
                      ..++.|++.|+|.        |.||||+|+.+|++|+|++||+. |+.+..|.+|+||||+|+.+|+.++|++|++.| |
T Consensus       214 ~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad  293 (368)
T 3jue_A          214 PTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD  293 (368)
T ss_dssp             HHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCC
Confidence            4677888999983        78999999999999999999999 669999999999999999999999999999999 5


Q ss_pred             cc----ccchHHHHHHHhCCchHHHHHHHhCccc-------cccCchhhHhhhcCh
Q 006847          394 AV----AFLGPLMRAAERGCMQVVQWFVKRGCRD-------MDLCLALTAATSSSQ  438 (629)
Q Consensus       394 ~e----~G~TPLI~ASenGhLEVVKYLIS~GAdd-------~~g~taL~tA~s~gq  438 (629)
                      ++    .|.|||++|++.|+.++|++|.+.|.++       ..+.|+++.+-.+..
T Consensus       294 ~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          294 LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHh
Confidence            54    7999999999999999999999999753       346677776665543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.67  E-value=2.6e-17  Score=132.40  Aligned_cols=84  Identities=20%  Similarity=0.214  Sum_probs=75.0

Q ss_pred             hcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHh
Q 006847          363 NSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAA  433 (629)
Q Consensus       363 nak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA  433 (629)
                      ...|.+|+|||++|+.+|++++|++|++.| +++    .|.||||+|+.+|+.++|+||++.|++    +..|.|||+.|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            347889999999999999999999999999 543    799999999999999999999999996    56799999999


Q ss_pred             hhcChHHHHHhhh
Q 006847          434 TSSSQVEVAAYLL  446 (629)
Q Consensus       434 ~s~gq~eVVkYLL  446 (629)
                      +..++.++++||.
T Consensus        98 ~~~~~~~~~~~L~  110 (110)
T 2zgd_A           98 IDNGNEDLAEILQ  110 (110)
T ss_dssp             HHHTCHHHHHHHC
T ss_pred             HHcCCHHHHHHhC
Confidence            9999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	629
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 344 ASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG---NAVAFLG 399
           AS  G   +V+ LLQ  A  N  +V V+  L  A+        + L++     NA A   
Sbjct: 7   ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 66

Query: 400 --PLMRAAERGCMQVVQWFVKRGCRDMDLC 427
             PL  AA  G   +V+  ++         
Sbjct: 67  QTPLHCAARIGHTNMVKLLLENNANPNLAT 96

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 400 PLMRAAERGCMQVVQWFVKRGC----RDMDLCLALTAATSSSQVEVAAYLLPH 448
           PL  A+  G + +V+  ++RG      ++ +   L  A  +   EVA YLL +
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 55

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 4e-04
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 372 ALGFASHYCKIGTMECLVEEG---NAVAFLG--PLMRAAERGCMQVVQWFVKRGC----R 422
            L  AS    +  ++ L++ G   N        PL  AA  G  +V ++ ++       +
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 423 DMDLCLALTAATSSSQVEVAAYLLPH 448
             D    L  A       +   LL +
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLEN 88

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 18/130 (13%)

Query: 328 LLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMEC 387
            L++     +    +    +G   +   + +   R     ++  A   ++     G  + 
Sbjct: 215 FLLDCP-VMLAYAEIHEFEYGEKYVNPFIARHVNRLK---EMHDAFKLSNPD---GVFDL 267

Query: 388 LVEEGNAVAFLG--PLMRAAERGCMQVVQWFVKRGC---------RDMDLCLALTAATSS 436
           + +      F     L+R  +   +  +++ +                D    L  A   
Sbjct: 268 VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

Query: 437 SQVEVAAYLL 446
                 A LL
Sbjct: 328 GNQGACALLL 337

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	629
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.9
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.89
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.88
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.87
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.87
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.87
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.86
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.85
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.83
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.83
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.8
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.79
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.79
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.78
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.78
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.77
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.76
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.75
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.75
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.74
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.74
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.74
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.73
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.73
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.71
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.7
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.58

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=5.9e-26  Score=192.08  Aligned_cols=122  Identities=20%  Similarity=0.196  Sum_probs=109.4

Q ss_pred             HHHHHHHhcCCCC-------cchhHHHHhhcCCHHHHHHHHHH-------------------------------------
Q 006847          324 GLLGLLVEGGADN-------VNQCFLEASRFGSTELVRILLQI-------------------------------------  359 (629)
Q Consensus       324 gLlKsLIEgGaD~-------gnTPLL~AS~~GhLEVVKyLISI-------------------------------------  359 (629)
                      .++|+|||.|+|.       |+||||+|+++|+.|+|++||+.                                     
T Consensus         3 ~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATN   82 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCC
T ss_pred             HHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4789999999994       99999999999999999999995                                     


Q ss_pred             -------------------------------hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHH
Q 006847          360 -------------------------------AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMR  403 (629)
Q Consensus       360 -------------------------------A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~  403 (629)
                                                     ++.+..+.+|+|||++|+.+|+.+++++|++.+ +++    .|+||||.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~  162 (209)
T d1ot8a_          83 LNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFL  162 (209)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccch
Confidence                                           111225666889999999999999999999999 443    79999999


Q ss_pred             HHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhh
Q 006847          404 AAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYL  445 (629)
Q Consensus       404 ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYL  445 (629)
                      |+.+|+.++||+|++.|++    +..|.|||+.|+..|+.|||+||
T Consensus       163 A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         163 AAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999997    56799999999999999999998

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6e-25  Score=181.55  Aligned_cols=112  Identities=22%  Similarity=0.223  Sum_probs=102.0

Q ss_pred             CcchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-----ccchHHHHHHHhC
Q 006847          336 NVNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-----AFLGPLMRAAERG  408 (629)
Q Consensus       336 ~gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-----~G~TPLI~ASenG  408 (629)
                      .+.++|+.|+++|++|+||+||+. |+.+..|.+|.|||++|. +||.++|||||+.| +++     .+.||||.|+++|
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            356899999999999999999998 679999999999998775 79999999999999 444     4568999999999


Q ss_pred             CchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          409 CMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       409 hLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                      +.++||||++.|++    +..|.|||+.|+.+|+.|+++||++.
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             cccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999996    66899999999999999999999974

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=5.5e-25  Score=180.68  Aligned_cols=106  Identities=21%  Similarity=0.253  Sum_probs=96.4

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCc
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCM  410 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhL  410 (629)
                      .+|||++|+++|++|+||+||+. ++.+.+|.+|+||||+|+.+|+.+++++|++.| |++    .|+||||+|+++|+.
T Consensus         2 c~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           2 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             CChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            46999999999999999999998 668899999999999999999999999999999 554    899999999999999


Q ss_pred             hHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhh
Q 006847          411 QVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLL  446 (629)
Q Consensus       411 EVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLL  446 (629)
                      ++||||++.||+    +..|.|||+.|.    .+.+++||
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a~----~~~i~~LL  117 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEATD----NQAIKALL  117 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTCS----STTTGGGG
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHHh----HHHHHHhc
Confidence            999999999997    567899998883    46777776

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=3.2e-25  Score=210.79  Aligned_cols=114  Identities=16%  Similarity=0.138  Sum_probs=99.2

Q ss_pred             CcchhHHHHhhcCCHHHHHH---HHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc------ccchHHHHH
Q 006847          336 NVNQCFLEASRFGSTELVRI---LLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV------AFLGPLMRA  404 (629)
Q Consensus       336 ~gnTPLL~AS~~GhLEVVKy---LISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e------~G~TPLI~A  404 (629)
                      +|+|||++|+++||.|+|+|   |++. |+.+.+|.+|+||||+|+++||+|+||+|++.| +++      +|+||||.|
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A  168 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA  168 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHH
Confidence            48999999999999988887   5666 668999999999999999999999999999999 543      599999999


Q ss_pred             HHhCCchHHHHHHHhCcc-------ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          405 AERGCMQVVQWFVKRGCR-------DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       405 SenGhLEVVKYLIS~GAd-------d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +++||+||||||++.|++       +..+.||++.|+.+||.|||+||+.+-
T Consensus       169 a~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  220 (346)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             HHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCC
Confidence            999999999999999985       235678889999999999999999864

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=3.9e-24  Score=185.94  Aligned_cols=127  Identities=20%  Similarity=0.128  Sum_probs=111.6

Q ss_pred             HHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-------------------------------------
Q 006847          323 QGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-------------------------------------  359 (629)
Q Consensus       323 qgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-------------------------------------  359 (629)
                      ..++++|++.|||.      |+|||++|+.+|+.|++++|++.                                     
T Consensus        58 ~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (255)
T d1oy3d_          58 ASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE  137 (255)
T ss_dssp             HHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------
T ss_pred             cccccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchh
Confidence            34678899999984      99999999999999999999753                                     


Q ss_pred             -----------hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc-----cccchHHHHHHHhCCchHHHHHHHhCcc
Q 006847          360 -----------AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA-----VAFLGPLMRAAERGCMQVVQWFVKRGCR  422 (629)
Q Consensus       360 -----------A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~-----e~G~TPLI~ASenGhLEVVKYLIS~GAd  422 (629)
                                 ...+.+|.+|.||||+|+++|+.++|++|++.| +.     ..|.||||.|+++|+.|+||+|++.|++
T Consensus       138 ~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad  217 (255)
T d1oy3d_         138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD  217 (255)
T ss_dssp             ------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC
Confidence                       222347788999999999999999999999988 22     2799999999999999999999999996


Q ss_pred             ----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          423 ----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       423 ----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                          +..|.|||++|+..++.+++++|+++.
T Consensus       218 in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~G  248 (255)
T d1oy3d_         218 PTARMYGGRTPLGSALLRPNPILARLLRAHG  248 (255)
T ss_dssp             TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                567999999999999999999999976

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-23  Score=183.00  Aligned_cols=123  Identities=15%  Similarity=0.095  Sum_probs=113.8

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      ..+++|++.|+|.      |.|||++|+.+|+.|+|++||+. ++.+.+|.+|.|||++|+++++.+++++|++.| +++
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~  163 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN  163 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             chhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceee
Confidence            5778999999984      89999999999999999999998 568889999999999999999999999999999 444


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhc
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLP  447 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS  447 (629)
                          .|+||||.|+++|++|+||+|++.|++    |.+|.|||+.| ..++.+|+++||.
T Consensus       164 ~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         164 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             eccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence                899999999999999999999999996    66799999999 4799999999985

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=6.6e-23  Score=167.20  Aligned_cols=123  Identities=19%  Similarity=0.207  Sum_probs=110.5

Q ss_pred             HHHHHHHhcCCCC-----cchhHHHHhhcCCHHHHHHHHHHhh-hhcccCCcchhhHHhhhcCccceehhhhccC-Ccc-
Q 006847          324 GLLGLLVEGGADN-----VNQCFLEASRFGSTELVRILLQIAQ-RNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV-  395 (629)
Q Consensus       324 gLlKsLIEgGaD~-----gnTPLL~AS~~GhLEVVKyLISIA~-knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e-  395 (629)
                      ..+++|++.|+|.     |+|||++|++++++|+|++++..-. .+..+.++.++++++..+.+.+++++|++.| +.. 
T Consensus        16 ~~v~~LL~~ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   95 (153)
T d1awcb_          16 DEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA   95 (153)
T ss_dssp             HHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred             HHHHHHHHcCCCcccccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCcccc
Confidence            4667899999985     9999999999999999999998844 6667778889999999999999999999999 443 


Q ss_pred             ---ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhh
Q 006847          396 ---AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLL  446 (629)
Q Consensus       396 ---~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLL  446 (629)
                         .|+||||+|+..|++++||||++.||+    +..|.|||++|+.+|+.||+++|.
T Consensus        96 ~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL~  153 (153)
T d1awcb_          96 KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             ccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhCc
Confidence               899999999999999999999999996    678999999999999999999983

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.5e-24  Score=176.43  Aligned_cols=110  Identities=21%  Similarity=0.171  Sum_probs=98.4

Q ss_pred             hhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchH
Q 006847          339 QCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQV  412 (629)
Q Consensus       339 TPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEV  412 (629)
                      +.||+|+..|++|+||+||+. ++.+.+|.+|+||||+|+.+|+.+++++|++.| +.+    +|+||||+|+++|++++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            689999999999999999998 669999999999999999999999999999999 444    89999999999999999


Q ss_pred             HHHHHHhCccc-----cccCchhhH--hhhcChHHHHHhhhcC
Q 006847          413 VQWFVKRGCRD-----MDLCLALTA--ATSSSQVEVAAYLLPH  448 (629)
Q Consensus       413 VKYLIS~GAdd-----~~g~taL~t--A~s~gq~eVVkYLLS~  448 (629)
                      ||+|++.||+-     ..+.|+++.  |...|+.|+++||++.
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999972     246676555  4677899999999874

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=3.8e-24  Score=203.36  Aligned_cols=98  Identities=16%  Similarity=0.155  Sum_probs=82.5

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhccc--CCcchhhHHhhhcCccceehhhhccC-C
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLD--VDVDLALGFASHYCKIGTMECLVEEG-N  393 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~--~DgdTpLi~AS~nGhLEVVKYLIS~G-d  393 (629)
                      .++++|++.|+|.      |+||||+|+++||+|+||+|++. |+.+..+  .+|+||||+|+++||+||||||++.| +
T Consensus       107 ~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~  186 (346)
T d2ajaa1         107 DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT  186 (346)
T ss_dssp             HHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGG
T ss_pred             HHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCc
Confidence            4566789999985      89999999999999999999998 5566654  56899999999999999999999998 3


Q ss_pred             cc-------ccchHHHHHHHhCCchHHHHHHHhCc
Q 006847          394 AV-------AFLGPLMRAAERGCMQVVQWFVKRGC  421 (629)
Q Consensus       394 ~e-------~G~TPLI~ASenGhLEVVKYLIS~GA  421 (629)
                      ..       ++.|||+.|+++||+|||+||++.|+
T Consensus       187 ~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga  221 (346)
T d2ajaa1         187 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  221 (346)
T ss_dssp             GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             ccccccccCCCcchhhHHhhcCHHHHHHHHHhCCC
Confidence            21       57888888999999999999999886

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=5.9e-23  Score=178.50  Aligned_cols=126  Identities=17%  Similarity=0.065  Sum_probs=99.0

Q ss_pred             HHHHHHHhcCCCC---------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccCC
Q 006847          324 GLLGLLVEGGADN---------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEGN  393 (629)
Q Consensus       324 gLlKsLIEgGaD~---------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~Gd  393 (629)
                      .++++|++.|+|.         |+||||+|+.+|+.|+|++||+. |+.+.+|.+|.|||++|+.+|+.+++++|++.+.
T Consensus        23 ~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~  102 (255)
T d1oy3d_          23 PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP  102 (255)
T ss_dssp             HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCC
T ss_pred             HHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhcc
Confidence            4667888877762         77888888888888888888887 5577788888888888888888888888876540


Q ss_pred             c----------------------------------------------------cccchHHHHHHHhCCchHHHHHHHhCc
Q 006847          394 A----------------------------------------------------VAFLGPLMRAAERGCMQVVQWFVKRGC  421 (629)
Q Consensus       394 ~----------------------------------------------------e~G~TPLI~ASenGhLEVVKYLIS~GA  421 (629)
                      .                                                    ..|.||||+|+++|+.|+|+||++.|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~  182 (255)
T d1oy3d_         103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA  182 (255)
T ss_dssp             SSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             chhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccc
Confidence            0                                                    036788888888888888888888888


Q ss_pred             c-----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          422 R-----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       422 d-----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +     +..|.||||.|+..++.+++++|+.+-
T Consensus       183 ~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g  215 (255)
T d1oy3d_         183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG  215 (255)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cccccccccccccccccccccHHHHHHHHHHCC
Confidence            5     335788888888888888888888763

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-22  Score=169.02  Aligned_cols=123  Identities=21%  Similarity=0.181  Sum_probs=109.8

Q ss_pred             HHHHHHh-cCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          325 LLGLLVE-GGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       325 LlKsLIE-gGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .+|+|++ +|+|.      |+|||++|+ +|+.|+|++||.. ++.+..+.+|.+||++|...++.++++++++.| +++
T Consensus        17 ~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n   95 (156)
T d1bd8a_          17 EVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN   95 (156)
T ss_dssp             HHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4566665 67774      999999875 6999999999988 568889999999999999999999999999999 444


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                          .|.||||+|++.|+.++|+||+ .|++    +.+|.|||+.|+..|+.|+++||++|+
T Consensus        96 ~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h~  156 (156)
T d1bd8a_          96 VPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGHM  156 (156)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTTC
T ss_pred             cccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhhC
Confidence                7999999999999999999998 5885    678999999999999999999999985

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-22  Score=165.78  Aligned_cols=124  Identities=21%  Similarity=0.161  Sum_probs=113.8

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      ..+++|++.|+|.      |+|||+.|+ +|+.|+|++||+. ++.+..+.++.+||+++..+++.+.+++|++.| +.+
T Consensus        15 ~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~   93 (156)
T d1ihba_          15 EQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN   93 (156)
T ss_dssp             HHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccccccccccccccc
Confidence            4788999999994      999999875 8999999999998 668889999999999999999999999999999 333


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc-----ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR-----DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd-----d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                          .|.+||++|+..|+.|+|++|+++|..     +..|.||||.|+..++.+|++||+++
T Consensus        94 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          94 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                899999999999999999999999973     55689999999999999999999986

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.7e-22  Score=175.99  Aligned_cols=157  Identities=17%  Similarity=0.141  Sum_probs=121.0

Q ss_pred             HHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHHhh-hhcccCCcchhhHHhhhcCccceehhhhccC-Cc
Q 006847          323 QGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQIAQ-RNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       323 qgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISIA~-knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      ..+.++|.+.+.+.      |+||||+|+.+|+.|+|++|+.... ....+.++.+++++|..+||.+++++|++.| ++
T Consensus        17 ~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~   96 (223)
T d1uoha_          17 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV   96 (223)
T ss_dssp             HHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCcee
Confidence            34445566666652      9999999999999999999999844 6667778889999999999999999999988 44


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChh--hhhHhHHHHHHH
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQH--VLAALSIEILKA  464 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~--vl~alsieilkA  464 (629)
                      +    .|.||||+|+++|+.|+|+||++.|++    +..+.|||+.|+.+++.++++||+...+..  .+...-+-+.-|
T Consensus        97 ~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~A  176 (223)
T d1uoha_          97 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA  176 (223)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred             EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccc
Confidence            3    788999999999999999999999986    456889999999999999999998765321  111112223334


Q ss_pred             hcccCCCCccceeehhhc
Q 006847          465 AGERSGGSLDGVAFLLHS  482 (629)
Q Consensus       465 A~~rs~gs~~GV~flL~S  482 (629)
                      |.   .|.++-|.+||..
T Consensus       177 a~---~g~~~~v~~LL~~  191 (223)
T d1uoha_         177 CD---EERVEEAKLLVSQ  191 (223)
T ss_dssp             HH---TTCHHHHHHHHHT
T ss_pred             cc---cCcHHHHHHHHHC
Confidence            44   4677888888764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.9e-22  Score=161.00  Aligned_cols=124  Identities=19%  Similarity=0.198  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHHhh-hhc----------------------------
Q 006847          320 TVIQGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQIAQ-RNS----------------------------  364 (629)
Q Consensus       320 ~~iqgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISIA~-kna----------------------------  364 (629)
                      .+++-|++.+++.|+|.      |+|||++|+.+|+.|+|++||+... .+.                            
T Consensus        17 ~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   96 (228)
T d1k1aa_          17 PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA   96 (228)
T ss_dssp             HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcc
Confidence            55788888899999984      9999999999999999999998600 000                            


Q ss_pred             -------------------------------------------ccCCcchhhHHhhhcCccceehhhhccC-Ccc----c
Q 006847          365 -------------------------------------------LDVDVDLALGFASHYCKIGTMECLVEEG-NAV----A  396 (629)
Q Consensus       365 -------------------------------------------k~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~  396 (629)
                                                                 .+..+.+||++|+.+++.++++++++.| +..    .
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~  176 (228)
T d1k1aa_          97 APGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS  176 (228)
T ss_dssp             CTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTT
T ss_pred             ccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccccccccc
Confidence                                                       2223569999999999999999999999 222    7


Q ss_pred             cchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHH
Q 006847          397 FLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAA  443 (629)
Q Consensus       397 G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVk  443 (629)
                      |.|||+.|+++|+.|+||||++.|||    +.+|.|||+.|+..++.||||
T Consensus       177 g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         177 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999999999999999999999997    678999999999999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.85  E-value=1.1e-21  Score=170.76  Aligned_cols=81  Identities=22%  Similarity=0.276  Sum_probs=68.7

Q ss_pred             CCcchhhHHhhhcCccceehhhhccC--Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhc
Q 006847          367 VDVDLALGFASHYCKIGTMECLVEEG--NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSS  436 (629)
Q Consensus       367 ~DgdTpLi~AS~nGhLEVVKYLIS~G--d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~  436 (629)
                      .+|.|||+++...++.+++++++...  +..    .|.||||.|+++|+.++||||++.||+    |..|.|||+.|+..
T Consensus       185 ~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~  264 (277)
T d2fo1e1         185 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN  264 (277)
T ss_dssp             CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHT
T ss_pred             cCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHc
Confidence            34568888888888888888866554  222    789999999999999999999999996    66799999999999


Q ss_pred             ChHHHHHhhhc
Q 006847          437 SQVEVAAYLLP  447 (629)
Q Consensus       437 gq~eVVkYLLS  447 (629)
                      |+.|||++|+.
T Consensus       265 ~~~~iv~lL~~  275 (277)
T d2fo1e1         265 NHHNIVDIFDR  275 (277)
T ss_dssp             TCHHHHHHHHT
T ss_pred             CCHHHHHHHHH
Confidence            99999999975

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.5e-21  Score=157.31  Aligned_cols=115  Identities=17%  Similarity=0.170  Sum_probs=90.5

Q ss_pred             CCcchhHHHHhhcCCHHHHHHHHHH-----hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----c--------
Q 006847          335 DNVNQCFLEASRFGSTELVRILLQI-----AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----A--------  396 (629)
Q Consensus       335 D~gnTPLL~AS~~GhLEVVKyLISI-----A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~--------  396 (629)
                      |+|+||||+|+++|++|+|++||+.     ++.+.+|.+|+|||++|+.+|+.++|++|++.| +.+    .        
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            6799999999999999999999975     457789999999999999999999999999988 221    2        


Q ss_pred             ---------------------------------------------------------------cchHHHHHHHhCCchHH
Q 006847          397 ---------------------------------------------------------------FLGPLMRAAERGCMQVV  413 (629)
Q Consensus       397 ---------------------------------------------------------------G~TPLI~ASenGhLEVV  413 (629)
                                                                                     +.+||+.|+++++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence                                                                           35666666666666777


Q ss_pred             HHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          414 QWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       414 KYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +++++.|.+    +..|.|||+.|+..|+.++++||+++.
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G  200 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG  200 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCC
Confidence            777776664    445667777777777777777777654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.3e-21  Score=174.52  Aligned_cols=125  Identities=20%  Similarity=0.221  Sum_probs=113.0

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .+++.+++.+++.      |.|||+.|++.|+.|++++|++. ++.+..+.++.|||+.|+.+++.++++++++.| +.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in  324 (408)
T d1n11a_         245 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN  324 (408)
T ss_dssp             HHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT
T ss_pred             hHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccccccc
Confidence            4567888887763      88999999999999999999998 557888899999999999999999999999999 544


Q ss_pred             ----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcC
Q 006847          396 ----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPH  448 (629)
Q Consensus       396 ----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~  448 (629)
                          .|.||||.|+++|++|+||+|++.||+    +..|.|||+.|+..|+.+||+||...
T Consensus       325 ~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~  385 (408)
T d1n11a_         325 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV  385 (408)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence                799999999999999999999999997    66799999999999999999998443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.1e-21  Score=167.43  Aligned_cols=130  Identities=18%  Similarity=0.113  Sum_probs=113.8

Q ss_pred             HHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHHh-------hhhcccCCcchhhHHhhhcCccceehhhh
Q 006847          323 QGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQIA-------QRNSLDVDVDLALGFASHYCKIGTMECLV  389 (629)
Q Consensus       323 qgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISIA-------~knak~~DgdTpLi~AS~nGhLEVVKYLI  389 (629)
                      ..++++|++.|+|.      |.|||+.|..+|+.+++++|++..       .......+|.|||++|+.+|++++++||+
T Consensus        52 ~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~  131 (221)
T d1iknd_          52 PEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV  131 (221)
T ss_dssp             HHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeec
Confidence            35778899999984      889999999999999999999872       23446667889999999999999999999


Q ss_pred             ccC-Cc-----cccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChh
Q 006847          390 EEG-NA-----VAFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQH  452 (629)
Q Consensus       390 S~G-d~-----e~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~  452 (629)
                      +.| +.     .+|+||||+|+++|+.++||||++.|+|    +..|.|||+.|+..++.++++||+...+..
T Consensus       132 ~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         132 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             ccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            999 22     2699999999999999999999999997    567999999999999999999999987654

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.83  E-value=4.8e-21  Score=169.39  Aligned_cols=126  Identities=22%  Similarity=0.208  Sum_probs=103.3

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc-
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA-  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~-  394 (629)
                      .++++||+.|+|.      |.|||++|+.+|+.|+|++||+. +.....+..+.|||++|..+|+.+++++|++.| +. 
T Consensus        54 ~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~  133 (291)
T d1s70b_          54 EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG  133 (291)
T ss_dssp             HHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccccCcccc
Confidence            3667888888873      88888888888888888888887 345566777778888888888888888887655 11 


Q ss_pred             ---------------------------------------------------------------cccchHHHHHHHhCCch
Q 006847          395 ---------------------------------------------------------------VAFLGPLMRAAERGCMQ  411 (629)
Q Consensus       395 ---------------------------------------------------------------e~G~TPLI~ASenGhLE  411 (629)
                                                                                     ..|.|||+.|++.|+.+
T Consensus       134 ~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~  213 (291)
T d1s70b_         134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE  213 (291)
T ss_dssp             CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHH
T ss_pred             cccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChh
Confidence                                                                           14679999999999999


Q ss_pred             HHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          412 VVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       412 VVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +|++|++.|++    +..|.||||+|+..|+.++|++|+.+.
T Consensus       214 ~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~G  255 (291)
T d1s70b_         214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL  255 (291)
T ss_dssp             HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            99999999986    567999999999999999999999875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.9e-21  Score=166.18  Aligned_cols=126  Identities=16%  Similarity=0.068  Sum_probs=109.4

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .|+++|++.|+|.      |+||||+|+.+|+.++|++|++. ++.+..|.+|.|||++|.++|+.+++++|++.| +..
T Consensus        20 ~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~   99 (221)
T d1iknd_          20 EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH   99 (221)
T ss_dssp             CCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTS
T ss_pred             HHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence            3556777777763      99999999999999999999998 668999999999999999999999999999987 211


Q ss_pred             ----------ccchHHHHHHHhCCchHHHHHHHhCcc-----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          396 ----------AFLGPLMRAAERGCMQVVQWFVKRGCR-----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       396 ----------~G~TPLI~ASenGhLEVVKYLIS~GAd-----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                                .|.|||+.|+.+|+.++++||++.|+.     +.+|.||||+|+..|+.++++||+++-
T Consensus       100 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g  168 (221)
T d1iknd_         100 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG  168 (221)
T ss_dssp             SSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             ccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcC
Confidence                      589999999999999999999999995     457999999999999999999999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-20  Score=155.78  Aligned_cols=98  Identities=22%  Similarity=0.212  Sum_probs=87.3

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV  395 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e  395 (629)
                      .++|.|++.|+|.      |+||||+|+.+|+.++|++||+. ++.+..|.+|+||||+|+.+|++++||+|++.| |++
T Consensus        15 ~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~   94 (130)
T d1ycsb1          15 DLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF   94 (130)
T ss_dssp             HHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHHHcCCCcc
Confidence            4688999999994      99999999999999999999999 668999999999999999999999999999999 543


Q ss_pred             -----ccchHHHH--HHHhCCchHHHHHHHhCc
Q 006847          396 -----AFLGPLMR--AAERGCMQVVQWFVKRGC  421 (629)
Q Consensus       396 -----~G~TPLI~--ASenGhLEVVKYLIS~GA  421 (629)
                           ++.||+..  |.++||.|+|+||++.+.
T Consensus        95 ~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          95 AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             CCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence                 57777654  568899999999998764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1e-19  Score=165.95  Aligned_cols=126  Identities=25%  Similarity=0.311  Sum_probs=113.1

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Cc-
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NA-  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~-  394 (629)
                      .++|+|++.|+|.      |+|||++|+.+|++|+|++||+. |+.+.++.+|.|||++|+++|+.+++++|+..+ +. 
T Consensus        14 ~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~   93 (408)
T d1n11a_          14 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN   93 (408)
T ss_dssp             HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccc
Confidence            5788999999984      99999999999999999999999 668899999999999999999999999998654 11 


Q ss_pred             ------------------------------------cccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhh
Q 006847          395 ------------------------------------VAFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAAT  434 (629)
Q Consensus       395 ------------------------------------e~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~  434 (629)
                                                          ..+.+||..|...|+.++|++|++.|++    +..+.+||+.|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~  173 (408)
T d1n11a_          94 LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV  173 (408)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHH
T ss_pred             cccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHH
Confidence                                                1578999999999999999999999996    457889999999


Q ss_pred             hcChHHHHHhhhcCC
Q 006847          435 SSSQVEVAAYLLPHV  449 (629)
Q Consensus       435 s~gq~eVVkYLLS~v  449 (629)
                      ..++.+++++|+.+.
T Consensus       174 ~~~~~~~~~~Ll~~g  188 (408)
T d1n11a_         174 HHNNLDIVKLLLPRG  188 (408)
T ss_dssp             HTTCHHHHHHHGGGT
T ss_pred             HcCCHHHHHHHHhcC
Confidence            999999999999875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.8e-20  Score=154.09  Aligned_cols=111  Identities=20%  Similarity=0.245  Sum_probs=101.4

Q ss_pred             chhHHHHhhcCCHHHHHHHHHH--hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCc
Q 006847          338 NQCFLEASRFGSTELVRILLQI--AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCM  410 (629)
Q Consensus       338 nTPLL~AS~~GhLEVVKyLISI--A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhL  410 (629)
                      .+.|+.|+.+|++|+||+||+.  ++.+.+|.+|+|||++|. +|+.++|+||++.| +++    .|.+||+.|++.++.
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            3569999999999999999986  678899999999999987 58999999999999 544    799999999999999


Q ss_pred             hHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          411 QVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       411 EVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      ++++++++.|++    +..|.|||+.|+..|+.++++||+...
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~  124 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES  124 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTS
T ss_pred             cccccccccccccccccCCCCeeeccccccccccccccccccc
Confidence            999999999986    567999999999999999999999765

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.1e-19  Score=155.41  Aligned_cols=123  Identities=19%  Similarity=0.134  Sum_probs=106.6

Q ss_pred             HHHHHHHhcCCCC--------cchhHHHHhhcCCHHHHHHHHHHhh-hhcccCCcchhhHHhhhcCccceehhhhccC--
Q 006847          324 GLLGLLVEGGADN--------VNQCFLEASRFGSTELVRILLQIAQ-RNSLDVDVDLALGFASHYCKIGTMECLVEEG--  392 (629)
Q Consensus       324 gLlKsLIEgGaD~--------gnTPLL~AS~~GhLEVVKyLISIA~-knak~~DgdTpLi~AS~nGhLEVVKYLIS~G--  392 (629)
                      .+++.+...|++.        +.|||+.++.+|+.|++++|+.... .+..|.+|+|||++|+.+|+.+++++|++.|  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  163 (229)
T d1ixva_          84 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS  163 (229)
T ss_dssp             HHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccc
Confidence            4566666666652        8899999999999999999999844 6678999999999999999999999999998  


Q ss_pred             Ccc----ccchHHHHHHHhCCchHHHHHHH-hCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          393 NAV----AFLGPLMRAAERGCMQVVQWFVK-RGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       393 d~e----~G~TPLI~ASenGhLEVVKYLIS-~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +++    .|+||||+|+++|+.++|+||++ .||+    +..|.|||+.|+.   .+|++||++..
T Consensus       164 ~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g  226 (229)
T d1ixva_         164 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNV  226 (229)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHC
T ss_pred             cccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcC
Confidence            222    79999999999999999999997 4996    6689999999984   68999999754

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.2e-19  Score=147.79  Aligned_cols=113  Identities=30%  Similarity=0.311  Sum_probs=103.6

Q ss_pred             chhHHHHhhcCCHHHHHHHHHHhhhhcccCCcchhhHHhhhcCccceehhhhccCC-cc----ccchHHHHHHHhCCchH
Q 006847          338 NQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGN-AV----AFLGPLMRAAERGCMQV  412 (629)
Q Consensus       338 nTPLL~AS~~GhLEVVKyLISIA~knak~~DgdTpLi~AS~nGhLEVVKYLIS~Gd-~e----~G~TPLI~ASenGhLEV  412 (629)
                      +||||.|++.|+.|+|++||+.++....|.+|+||||||+++++.+.+++++.... ..    .+.++++.++...+.++
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcccccCCCcccccccccccccccccccccccccccccccccccccccccccccee
Confidence            49999999999999999999996655589999999999999999999999999992 22    78899999999999999


Q ss_pred             HHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          413 VQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       413 VKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      |+++++.|++    +..|.|||+.|+..++.++++||+++..
T Consensus        83 ~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga  124 (153)
T d1awcb_          83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA  124 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             eecccccCCccccccccCchHHHhhhhcchhheeeecccccc
Confidence            9999999996    5789999999999999999999999864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.2e-20  Score=148.85  Aligned_cols=111  Identities=21%  Similarity=0.183  Sum_probs=103.9

Q ss_pred             hhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchH
Q 006847          339 QCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQV  412 (629)
Q Consensus       339 TPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEV  412 (629)
                      +|||+|+.+|++|+|++||+. ++.+.+|.+|.||||+|+ +||.|++++|++.| |++    .|.|||+.|+.+|+.+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            799999999999999999999 779999999999999886 79999999999999 554    79999999999999999


Q ss_pred             HHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCC
Q 006847          413 VQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVP  450 (629)
Q Consensus       413 VKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vP  450 (629)
                      +++|++.|.+    +..+.+||+.|+..++.+++++|+.+.|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  123 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA  123 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999996    5689999999999999999999998775

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.9e-19  Score=152.71  Aligned_cols=113  Identities=15%  Similarity=0.094  Sum_probs=71.2

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhh---hcccCCcchhhHHhhhcCccceehhhhccC-Ccc------ccchHHHHHH
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQR---NSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV------AFLGPLMRAA  405 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~k---nak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e------~G~TPLI~AS  405 (629)
                      |+|||++|+.+|++|+|++||+. |+.   +..+..|.||+++|..++++++++++...| +.+      .+.|||++++
T Consensus        34 G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  113 (229)
T d1ixva_          34 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV  113 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            77777777777777777777775 222   234555666666666666666666666555 111      4566666666


Q ss_pred             HhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          406 ERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       406 enGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      ..++.+|+++|+..|.+    +..|.|||+.|+..++.++++||+.+-
T Consensus       114 ~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_         114 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence            66666666666666664    345666666666666666666666654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.9e-20  Score=150.64  Aligned_cols=94  Identities=21%  Similarity=0.141  Sum_probs=84.6

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcc-hhhHHhhhcCccceehhhhccC-Cc
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVD-LALGFASHYCKIGTMECLVEEG-NA  394 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~Dgd-TpLi~AS~nGhLEVVKYLIS~G-d~  394 (629)
                      ..+|+|++.|+|.      |.|||+.| .+|+.|+|++||+. |+.+.++.++. ||||+|+++|+.++|++|++.| |+
T Consensus        17 ~~v~~Ll~~gad~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~   95 (125)
T d1bi7b_          17 EEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL   95 (125)
T ss_dssp             HHHHHHHTTTCCTTCCCSSSCCTTTSS-CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHcCCcccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4688999999984      99999866 58999999999998 66888888876 6999999999999999999999 55


Q ss_pred             c----ccchHHHHHHHhCCchHHHHHHH
Q 006847          395 V----AFLGPLMRAAERGCMQVVQWFVK  418 (629)
Q Consensus       395 e----~G~TPLI~ASenGhLEVVKYLIS  418 (629)
                      +    .|+|||++|+++|+.|+||||++
T Consensus        96 ~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          96 DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            4    89999999999999999999976

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.1e-19  Score=153.81  Aligned_cols=115  Identities=23%  Similarity=0.198  Sum_probs=94.6

Q ss_pred             CCcchhHHHHhhcCCHHHHHHHHHH--hhhhcccCCcchhhHHh----hhcCccceehhhhccC-Ccc----ccchHHHH
Q 006847          335 DNVNQCFLEASRFGSTELVRILLQI--AQRNSLDVDVDLALGFA----SHYCKIGTMECLVEEG-NAV----AFLGPLMR  403 (629)
Q Consensus       335 D~gnTPLL~AS~~GhLEVVKyLISI--A~knak~~DgdTpLi~A----S~nGhLEVVKYLIS~G-d~e----~G~TPLI~  403 (629)
                      ..|.|||++|+++|++|+|++||.-  ++.+..+..|.+++..+    ...++.+++|+||+.| +++    .|.||||.
T Consensus       146 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~  225 (285)
T d1wdya_         146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL  225 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             ccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccch
Confidence            3488999999999999999999975  56788888888766554    3344557999999999 444    78999999


Q ss_pred             HHHhCCchHHHHHHHh-Ccc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          404 AAERGCMQVVQWFVKR-GCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       404 ASenGhLEVVKYLIS~-GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      |+++|+.|+|++|++. |++    +..|.||||.|+.+++.|+|+||+++.
T Consensus       226 a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G  276 (285)
T d1wdya_         226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             HHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999999999974 775    567999999999999999999998764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.75  E-value=5.7e-19  Score=156.01  Aligned_cols=117  Identities=26%  Similarity=0.240  Sum_probs=106.5

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCc
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCM  410 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhL  410 (629)
                      +.|+||.|++.|++|+|++||+. |+.|.+|.+|.|||++|+++||.|+||+|++.| +..    .+.|||+.|+..|++
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~  119 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL  119 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccccc
Confidence            55899999999999999999999 569999999999999999999999999999999 433    789999999999999


Q ss_pred             hHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCCChhh
Q 006847          411 QVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHVPQHV  453 (629)
Q Consensus       411 EVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~vPq~v  453 (629)
                      ++|++|++.|+.    +..+.++++.|+..+..+.+++|+..-+..+
T Consensus       120 ~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~  166 (291)
T d1s70b_         120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI  166 (291)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH
T ss_pred             chhhcccccCcccccccccCccccccccccccchhcccccccccccc
Confidence            999999999985    5689999999999999999999986554443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.74  E-value=2.3e-19  Score=155.90  Aligned_cols=111  Identities=16%  Similarity=0.128  Sum_probs=84.2

Q ss_pred             hhHHHH-hhcCCHHHHHHHHHHhhhhcccCCcchhhHHhhhcCccceehhh--------hccC-Ccc----ccchHHHHH
Q 006847          339 QCFLEA-SRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECL--------VEEG-NAV----AFLGPLMRA  404 (629)
Q Consensus       339 TPLL~A-S~~GhLEVVKyLISIA~knak~~DgdTpLi~AS~nGhLEVVKYL--------IS~G-d~e----~G~TPLI~A  404 (629)
                      |||+.| +..|+.++++.|++.+-....+.+|.||||||+.+|+.++||+|        |+.| |++    .|.||||+|
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A   81 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA   81 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccc
Confidence            677743 34566677777777643333345688899898888888888887        4556 443    788899998


Q ss_pred             HHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhcCC
Q 006847          405 AERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLPHV  449 (629)
Q Consensus       405 SenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS~v  449 (629)
                      +++|++|+||||++.||+    +..|.|||+.|...++.+++++++...
T Consensus        82 ~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  130 (277)
T d2fo1e1          82 VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNST  130 (277)
T ss_dssp             HHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSH
T ss_pred             cccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcc
Confidence            888888899999888886    446888888888888888888887654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.6e-18  Score=150.63  Aligned_cols=108  Identities=11%  Similarity=-0.008  Sum_probs=59.9

Q ss_pred             hHHHHhhcCCHHHHHHHHHH-hhhhc------ccCCcchhhHHhhhc---CccceehhhhccC-Ccc----ccchHHHHH
Q 006847          340 CFLEASRFGSTELVRILLQI-AQRNS------LDVDVDLALGFASHY---CKIGTMECLVEEG-NAV----AFLGPLMRA  404 (629)
Q Consensus       340 PLL~AS~~GhLEVVKyLISI-A~kna------k~~DgdTpLi~AS~n---GhLEVVKYLIS~G-d~e----~G~TPLI~A  404 (629)
                      +|.+|.+.+.++.|+.++.- ++.+.      .+..|+||||+|+++   |++++|++|++.| |++    .|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            44555666666555555543 11111      234455666666643   4556666666666 333    466666666


Q ss_pred             HHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHHHHHhhhc
Q 006847          405 AERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVEVAAYLLP  447 (629)
Q Consensus       405 SenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~eVVkYLLS  447 (629)
                      +++|+.++||+|++.|++    +..|.|||+.|+..++.+++++|+.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            666666666666666654    4456666666666666666666554

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.3e-18  Score=151.26  Aligned_cols=88  Identities=14%  Similarity=0.023  Sum_probs=81.3

Q ss_pred             cchhHHHHhhc---CCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHh
Q 006847          337 VNQCFLEASRF---GSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAER  407 (629)
Q Consensus       337 gnTPLL~AS~~---GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASen  407 (629)
                      |+||||+|+++   |++|+|++||+. ++.+.+|.+|+||||+|+++|+.++||+|++.| |++    .|.|||++|+++
T Consensus        45 g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  124 (154)
T d1dcqa1          45 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL  124 (154)
T ss_dssp             TCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHc
Confidence            88999999974   789999999998 679999999999999999999999999999999 554    899999999999


Q ss_pred             CCchHHHHHHHhCcccc
Q 006847          408 GCMQVVQWFVKRGCRDM  424 (629)
Q Consensus       408 GhLEVVKYLIS~GAdd~  424 (629)
                      |+.++|++|++.|+...
T Consensus       125 ~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1         125 KHEHCEELLTQALSGRF  141 (154)
T ss_dssp             TCHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHhCCCCC
Confidence            99999999999988643

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=2.2e-18  Score=145.25  Aligned_cols=95  Identities=25%  Similarity=0.209  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhcCCCC------cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCccceehhhhccC-C
Q 006847          322 IQGLLGLLVEGGADN------VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKIGTMECLVEEG-N  393 (629)
Q Consensus       322 iqgLlKsLIEgGaD~------gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhLEVVKYLIS~G-d  393 (629)
                      .....+.|++.|+|.      |+|||+.|+.+|+.++|++|++. +..+..|.+|.|||++|+++|+.++||+|++.| |
T Consensus       102 ~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad  181 (209)
T d1ot8a_         102 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN  181 (209)
T ss_dssp             CTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             chhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCC
Confidence            345567888999884      89999999999999999999999 568999999999999999999999999999999 6


Q ss_pred             cc----ccchHHHHHHHhCCchHHHHH
Q 006847          394 AV----AFLGPLMRAAERGCMQVVQWF  416 (629)
Q Consensus       394 ~e----~G~TPLI~ASenGhLEVVKYL  416 (629)
                      ++    .|.||||.|+++||.||||||
T Consensus       182 ~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         182 REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            54    799999999999999999997

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=7.6e-19  Score=143.80  Aligned_cols=80  Identities=20%  Similarity=0.281  Sum_probs=75.4

Q ss_pred             chhhHHhhhcCccceehhhhccC-Ccc----ccchHHHHHHHhCCchHHHHHHHhCcc----ccccCchhhHhhhcChHH
Q 006847          370 DLALGFASHYCKIGTMECLVEEG-NAV----AFLGPLMRAAERGCMQVVQWFVKRGCR----DMDLCLALTAATSSSQVE  440 (629)
Q Consensus       370 dTpLi~AS~nGhLEVVKYLIS~G-d~e----~G~TPLI~ASenGhLEVVKYLIS~GAd----d~~g~taL~tA~s~gq~e  440 (629)
                      ||||+||+++|++++||+||+.| |++    .|+||||+|+.+|+.++++||++.|++    +..|.||||.|+.+++.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            69999999999999999999999 555    899999999999999999999999997    568999999999999999


Q ss_pred             HHHhhhcCC
Q 006847          441 VAAYLLPHV  449 (629)
Q Consensus       441 VVkYLLS~v  449 (629)
                      +++||+++.
T Consensus        83 ~v~~Ll~~G   91 (118)
T d1myoa_          83 CVKLLLSKG   91 (118)
T ss_dssp             HHHHHHTTC
T ss_pred             hhhhhhccc
Confidence            999999875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.2e-17  Score=145.58  Aligned_cols=36  Identities=28%  Similarity=0.402  Sum_probs=32.9

Q ss_pred             HHHHHHHhcCCCC-------cchhHHHHhhcCCHHHHHHHHHH
Q 006847          324 GLLGLLVEGGADN-------VNQCFLEASRFGSTELVRILLQI  359 (629)
Q Consensus       324 gLlKsLIEgGaD~-------gnTPLL~AS~~GhLEVVKyLISI  359 (629)
                      .++|+||+.|+|.       |.|||++|+.+|+.|+|++|++.
T Consensus        19 e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~   61 (285)
T d1wdya_          19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH   61 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccc
Confidence            4689999999984       88999999999999999999985

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=7.9e-18  Score=154.79  Aligned_cols=115  Identities=16%  Similarity=0.021  Sum_probs=90.5

Q ss_pred             cchhHHHHhhcCCHHHHHHHHHH-hhhhcccCCcchhhHHhhhcCcc-------ceehhhhccC-Cc-cccchHHHHHHH
Q 006847          337 VNQCFLEASRFGSTELVRILLQI-AQRNSLDVDVDLALGFASHYCKI-------GTMECLVEEG-NA-VAFLGPLMRAAE  406 (629)
Q Consensus       337 gnTPLL~AS~~GhLEVVKyLISI-A~knak~~DgdTpLi~AS~nGhL-------EVVKYLIS~G-d~-e~G~TPLI~ASe  406 (629)
                      |+||||+|+++|++|+||+||+. |+.+.+|.+|+||||+|+..+|.       +++++|.+.+ .. ..|+||||.|+.
T Consensus       107 G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~~  186 (301)
T d1sw6a_         107 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIII  186 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHHH
Confidence            99999999999999999999999 77999999999999999988762       5667776666 22 278899998877


Q ss_pred             hCC----chHHHH--------HHHhCc-----------------------------------------cccccCchhhHh
Q 006847          407 RGC----MQVVQW--------FVKRGC-----------------------------------------RDMDLCLALTAA  433 (629)
Q Consensus       407 nGh----LEVVKY--------LIS~GA-----------------------------------------dd~~g~taL~tA  433 (629)
                      .++    .++++|        ++..+.                                         .|.+|.||||+|
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A  266 (301)
T d1sw6a_         187 TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA  266 (301)
T ss_dssp             HHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHH
T ss_pred             HhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHH
Confidence            643    333333        333222                                         256789999999


Q ss_pred             hhcChHHHHHhhhcCCCh
Q 006847          434 TSSSQVEVAAYLLPHVPQ  451 (629)
Q Consensus       434 ~s~gq~eVVkYLLS~vPq  451 (629)
                      +..|+.++|+||+.+...
T Consensus       267 ~~~g~~~iv~~Ll~~GAd  284 (301)
T d1sw6a_         267 ARLGNISIVDALLDYGAD  284 (301)
T ss_dssp             HHHCCHHHHHHHHHTTCC
T ss_pred             HHcCCHHHHHHHHHCCCC
Confidence            999999999999987643

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=7.6e-16  Score=141.45  Aligned_cols=109  Identities=17%  Similarity=0.105  Sum_probs=83.9

Q ss_pred             HHHHHHHhcCCCC------cchhHHHHhhcCCH-------HHHHHHHHHhhhhcccCCcchhhHHhhhcCccc----ee-
Q 006847          324 GLLGLLVEGGADN------VNQCFLEASRFGST-------ELVRILLQIAQRNSLDVDVDLALGFASHYCKIG----TM-  385 (629)
Q Consensus       324 gLlKsLIEgGaD~------gnTPLL~AS~~GhL-------EVVKyLISIA~knak~~DgdTpLi~AS~nGhLE----VV-  385 (629)
                      .++++||+.|||.      |+||||.|+..|+.       +++++|.  ...+..|..|.||||+|...++.+    ++ 
T Consensus       121 ~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~--~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~  198 (301)
T d1sw6a_         121 ELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY--PCLILEDSMNRTILHHIIITSGMTGCSAAAK  198 (301)
T ss_dssp             HHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG--GGGGEECTTCCCHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh--hhhhhcccccCCHHHHHHHHhCccccHHHHH
Confidence            4889999999994      99999999998763       4555543  346668889999999887665532    22 


Q ss_pred             -------hhhhccC----------------------------------------C--ccccchHHHHHHHhCCchHHHHH
Q 006847          386 -------ECLVEEG----------------------------------------N--AVAFLGPLMRAAERGCMQVVQWF  416 (629)
Q Consensus       386 -------KYLIS~G----------------------------------------d--~e~G~TPLI~ASenGhLEVVKYL  416 (629)
                             +.++..+                                        |  ..+|+||||+|+++|+.++|+||
T Consensus       199 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~L  278 (301)
T d1sw6a_         199 YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL  278 (301)
T ss_dssp             HHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                   2222222                                        1  12699999999999999999999


Q ss_pred             HHhCcc----ccccCchhhHhh
Q 006847          417 VKRGCR----DMDLCLALTAAT  434 (629)
Q Consensus       417 IS~GAd----d~~g~taL~tA~  434 (629)
                      ++.||+    +..|.|||+.|+
T Consensus       279 l~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         279 LDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHCCCCCCCCCCCCCCHHHHcC
Confidence            999997    568999999985