Citrus Sinensis ID: 006854

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
Protein Sequence
MAAGDDSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRCR
Secondary Structure (PSIPRED)
cccccccccccEEEEcEEEEEEEEEEcccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEcccccccccEEEEEEEEcccccccEEEEEEccccccccEEEEEEEcccccccccEEEEEEEccccccccccccccEEEEEEEEcccccccEEccccccccccccccccccccccccccccccccccccccccEEccccEEEcccHHHHHHHHHHHccccEEEEEEEEcccccEEEEccccccccccccHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccHHHHHHHcccccccEEEcccccccccEEEEEEccccccccccEEEEEEcccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHcccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHcccEEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEccEEEEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccEccccEEEEEccccEEEEEEEEcccccccccEEEEEEEEccccEEEEEEEcccccccEEEEEEEEEHHHHcccccccccEEEccccccccccccEEEEEEEEEccccccHHHcccccccccccccccccccccccEEEEEEEcccccccccccEcccccEcccccHHHHHHHHHHHHccEEEEEccEEccEEEEEEcccccccccccccHHHHHHHHHHcccEEEEEEEccccccccccEccccccccccHHHHHHHccccEEEEEccccccccccEEEEEEEEEEEEcccEEEEEEccccccccEEEEEEcccEccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHccEEEEEcEEEEccccccccccccccHcccHHHHHHHHHHHHHcccccEEHHccc
Coil and Loop (DISEMBL)
maagddsdkeKVIYLHGDLDLKIirarrlpnmdmMSEHLRRCFtacdvcktpapthetfqdddgvrhtskiirkskiitsdpyvtvvVPQATVARTRVlknsqepvwnehfniplahplsnleiqvkdddvfgaqiigtaaipahtiATGELISRWydiiapsgsppkpgasiqlelkftpcdknplyrqgiagdpehkgvrnayfplrkgshvrlyqdahvtegilpeipldggklykpgtcweDICHAISEAHHLIYIVGWSVFHKIKLIreqtrplprggdltlGELLKYKSEEGVRVLLLVWDdktshdklgvktpgvmathdeeTKKFFKhssvncvlapryassklsyfkQQIVGTIFTHHQKCVLvdtqasgnnrkITAFIGgidlcdgrydtpehrlfrdldtvfkddfhnptypigtkaprepwhdlhcrldgpaaYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRIswilspelslktngttivprddnvvrvskeddpenwhVQIFRsidsgsvkgfpksiediddqslICAKDVVIDKSIQTAYIQAIRSAQHFIYIENqyflgssyawpsyknagadnliPMELALKIASKIRANERFAVARRCR
Flexible Loop (DISEMBL)
maagddsdkekviylhgdldlkiirARRLPNMDMMSEHLRRCFTACDVCKTPapthetfqdddgvrhTSKIIrkskiitsdpyvtvVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRqgiagdpehkgVRNAYFPLRKGSHVRLYQDAHVtegilpeipldGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIreqtrplprggdLTLGELLKYKSEEGVRVLLLvwddktshdklgvktpgvMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVdtqasgnnrkITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPtypigtkaprepWHDLHCRLDGPAAYDVLINFEQRWrkatklteltfkfkrvshwrddYLIKIGRiswilspelslktngttivprddnvvrvskeddpenwhvqifrsidsgsvkgFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRCR
Low Complexity Region (SEG)
MAAGDDSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHtskiirkskiitsDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDiiapsgsppkpgasiQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRCR
Disordered region (IsUnstruct)
***********VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIA************QLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRV******ENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFA******
Disordered Region (DISOPRED)
*************YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCK************************SKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIA**********SIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRCR
Disordered Region (DISEMBL)
********KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRCR
Disordered Region (DISPRO)
********KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPA**********************KIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVA*RCR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAGDDSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	628	2.2.26 [Sep-21-2011]
Q9C5Y0	868	Phospholipase D delta OS=	yes	no	0.974	0.705	0.723	0.0
P93733	1083	Phospholipase D beta 1 OS	no	no	0.906	0.525	0.544	0.0
Q9T053	858	Phospholipase D gamma 1 O	no	no	0.912	0.667	0.500	1e-172
O23078	927	Phospholipase D beta 2 OS	no	no	0.906	0.613	0.499	1e-170
Q9T052	866	Phospholipase D gamma 3 O	no	no	0.915	0.663	0.491	1e-168
Q9T051	856	Phospholipase D gamma 2 O	no	no	0.904	0.663	0.484	1e-164
P93400	808	Phospholipase D alpha 1 O	N/A	no	0.804	0.625	0.481	1e-136
Q41142	808	Phospholipase D alpha 1 O	N/A	no	0.804	0.625	0.467	1e-134
P86387	808	Phospholipase D alpha 1 O	N/A	no	0.804	0.625	0.465	1e-132
O04865	809	Phospholipase D alpha 1 O	N/A	no	0.804	0.624	0.471	1e-132

>sp|Q9C5Y0|PLDD1_ARATH Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/625 (72%), Positives = 511/625 (81%), Gaps = 13/625 (2%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct: 7   EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDK 66

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
            I    K+ITSDPYVTVVVPQAT+ARTRVLKNSQEP+W+E FNI +AHP + LE QVKDD
Sbjct: 67  NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDD 126

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DVFGAQIIGTA IP   IA+GE IS W+ ++  SG PPK   +I +++KFTP D+   YR
Sbjct: 127 DVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            GIAGDPE +GVR  YFP+RKGS VRLYQDAHV +G LP I LD GK+Y+ G CWEDIC+
Sbjct: 187 CGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICY 246

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AISEAHH+IYIVGWS+FHKIKL+RE    +PR  D+TLGELLKYKS+EGVRVLLLVWDDK
Sbjct: 247 AISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDK 304

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ----------- 358
           TSHDK G+KTPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ           
Sbjct: 305 TSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPSSSIYIMT 364

Query: 359 IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFH 418
           +VGT+FTHHQKCVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+  DLDTVFKDDFH
Sbjct: 365 VVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFH 424

Query: 419 NPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478
           NPT+P GTKAPR+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD
Sbjct: 425 NPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDD 484

Query: 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGF 538
            LI+IGRISWILSP      +GT+I+P DD  V VSKEDDPENWHVQIFRSIDSGSVKGF
Sbjct: 485 ALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGF 544

Query: 539 PKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAG 598
           PK  ++ + Q L CAK +V+DKSIQTAYIQ IRSAQHFIYIENQYFLGSSYAWPSY++AG
Sbjct: 545 PKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAG 604

Query: 599 ADNLIPMELALKIASKIRANERFAV 623
           ADNLIPMELALKI SKIRA ERFAV
Sbjct: 605 ADNLIPMELALKIVSKIRAKERFAV 629

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. May be involved in phosphatidic acid accumulation in the dehydration stress response and in the transduction of hormonal and environmental signals to the microtubules cytoskeleton.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4

>sp|P93733|PLDB1_ARATH Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/615 (54%), Positives = 416/615 (67%), Gaps = 46/615 (7%)

Query: 11  KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSK 70
           KV+ LHG+LD+ I  A+ LPNMDM                     H+T  D  G R   K
Sbjct: 267 KVLLLHGNLDIWIYHAKNLPNMDMF--------------------HKTLGDMFG-RLPGK 305

Query: 71  IIRK-SKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
           I  + +  ITSDPYV+V V  A + RT V+ NS+ PVW +HF +P+AH  + +   VKD 
Sbjct: 306 IEGQLTSKITSDPYVSVSVAGAVIGRTYVMSNSENPVWMQHFYVPVAHHAAEVHFVVKDS 365

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DV G+Q+IG   IP   I +G  I   Y I+  +G P KPGA++ L +++TP DK  +Y 
Sbjct: 366 DVVGSQLIGLVTIPVEQIYSGAKIEGTYPILNSNGKPCKPGANLSLSIQYTPMDKLSVYH 425

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            G+   P+++GV   YFPLRKG  VRLYQDAHV EG+LP I LD G  Y+ G CW D+  
Sbjct: 426 HGVGAGPDYQGVPGTYFPLRKGGTVRLYQDAHVPEGMLPGIRLDNGMSYEHGKCWHDMFD 485

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AI +A  LIYI GWSV+HK+KLIR++  P     + TLGELL+ KS+EGVRVLLL+WDD 
Sbjct: 486 AIRQARRLIYITGWSVWHKVKLIRDKLGP---ASECTLGELLRSKSQEGVRVLLLIWDDP 542

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQK 369
           TS   LG KT GVMATHDEET++FFKHSSV  +L PR A  + S+ KQ+ VGTI+THHQK
Sbjct: 543 TSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRNAGKRHSWVKQREVGTIYTHHQK 602

Query: 370 CVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIG-TKA 428
            V+VD  A GN RKI AF+GG+DLCDGRYDTP+H LFR L T+ KDDFHNPT+    +  
Sbjct: 603 NVIVDADAGGNRRKIIAFVGGLDLCDGRYDTPQHPLFRTLQTIHKDDFHNPTFTGNLSGC 662

Query: 429 PREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISW 488
           PREPWHDLH ++DGPAAYDVL NFE+RW KA K + +  KFK      DD L++I RI  
Sbjct: 663 PREPWHDLHSKIDGPAAYDVLTNFEERWLKAAKPSGIK-KFKTS---YDDALLRIDRIPD 718

Query: 489 ILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQ 548
           IL         G +  P          E+DPE WHVQIFRSIDS SVKGFPK  +D   +
Sbjct: 719 IL---------GVSDTP-------TVSENDPEAWHVQIFRSIDSNSVKGFPKDPKDATCK 762

Query: 549 SLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELA 608
           +L+C K+V+ID SI TAY++AIR+AQHFIYIENQYF+GSSY W ++K+ GA+NLIPME+A
Sbjct: 763 NLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFIGSSYNWNAHKDIGANNLIPMEIA 822

Query: 609 LKIASKIRANERFAV 623
           LKIA KIRANERFA 
Sbjct: 823 LKIAEKIRANERFAA 837

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine or N-acylphosphatidylethanolamine as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|Q9T053|PLDG1_ARATH Phospholipase D gamma 1 OS=Arabidopsis thaliana GN=PLDGAMMA1 PE=1 SV=1

 Score =  605 bits (1561), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 309/617 (50%), Positives = 396/617 (64%), Gaps = 44/617 (7%)

Query: 7   SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVR 66
           S   +V  LHG+LD+ +  A+ LPNMD     L    +     K                
Sbjct: 32  SGSLRVELLHGNLDIWVKEAKHLPNMDGFHNRLGGMLSGLGRKKVEG------------- 78

Query: 67  HTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQV 126
                  KS  ITSDPYVTV +  A + RT V+ NS+ PVW +HF++P+AH  + +   V
Sbjct: 79  ------EKSSKITSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFVV 132

Query: 127 KDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186
           KD D+ G+QI+G   IP   + +G  I   + I+  SG P K GA + L +++TP ++  
Sbjct: 133 KDSDIIGSQIMGAVGIPTEQLCSGNRIEGLFPILNSSGKPCKQGAVLGLSIQYTPMERMR 192

Query: 187 LYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWED 246
           LY+ G+    E  GV   YFPLRKG  V LYQDAHV +G LP + LDGG  Y+ G CWED
Sbjct: 193 LYQMGVGSGNECVGVPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWED 252

Query: 247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVW 306
           +  AI +A  LIYI GWSVFH ++L+R    P     + TLGELLK KS+EGVRVL+LVW
Sbjct: 253 MADAIRQARRLIYITGWSVFHPVRLVRRTNDPT----EGTLGELLKVKSQEGVRVLVLVW 308

Query: 307 DDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTH 366
           DD TS   LG KT GVM T DEET++FFKHSSV  +L PR      S+ K+  VGTI+TH
Sbjct: 309 DDPTSRSLLGFKTQGVMNTSDEETRRFFKHSSVQVLLCPRSGGKGHSFIKKSEVGTIYTH 368

Query: 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTY-PIG 425
           HQK V+VD +A+ N RKI AF+GG+DLC+GR+DTP+H LFR L T+ KDDFHNP +    
Sbjct: 369 HQKTVIVDAEAAQNRRKIVAFVGGLDLCNGRFDTPKHPLFRTLKTLHKDDFHNPNFVTTA 428

Query: 426 TKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGR 485
              PREPWHDLH ++DGPAAYDVL NFE+RW KA+K   +  K K  S   DD L++I R
Sbjct: 429 DDGPREPWHDLHSKIDGPAAYDVLANFEERWMKASKPRGIG-KLKSSS---DDSLLRIDR 484

Query: 486 ISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDI 545
           I  I+    +   N                ++DPE+WHVQ+FRSIDS SVKGFPK  ++ 
Sbjct: 485 IPDIVGLSEASSAN----------------DNDPESWHVQVFRSIDSSSVKGFPKDPKEA 528

Query: 546 DDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPM 605
             ++L+C K+++ID SI  AY++AIRSAQHFIYIENQYFLGSS+ W S K+ GA+NLIPM
Sbjct: 529 TGRNLLCGKNILIDMSIHAAYVKAIRSAQHFIYIENQYFLGSSFNWDSNKDLGANNLIPM 588

Query: 606 ELALKIASKIRANERFA 622
           E+ALKIA+KIRA E+FA
Sbjct: 589 EIALKIANKIRAREKFA 605

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine but prefers ethanolamine-containing lipids as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|O23078|PLDB2_ARATH Phospholipase D beta 2 OS=Arabidopsis thaliana GN=PLDBETA2 PE=2 SV=3

 Score =  598 bits (1543), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 307/615 (49%), Positives = 397/615 (64%), Gaps = 46/615 (7%)

Query: 11  KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSK 70
           KV+ LHG+LD+ +  A  LPN+D+  + L   F                        T+ 
Sbjct: 111 KVLLLHGNLDIWVSCANNLPNLDLFHKTLGVVFGGM---------------------TNM 149

Query: 71  IIRK-SKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
           I  + SK ITSDPYV++ V  A + RT V+ NS+ PVW +HF +P+AH  + +   VKD 
Sbjct: 150 IEGQLSKKITSDPYVSISVAGAVIGRTYVISNSENPVWQQHFYVPVAHHAAEVHFVVKDS 209

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           D  G+Q+IG   IP   I +G  I   Y I   +G P KPGA++ L +++T  +K  +Y 
Sbjct: 210 DAVGSQLIGIVTIPVEQIYSGARIEGTYSIRDSNGKPCKPGATLSLSIQYTSMNKLSVYH 269

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            G+   P ++GV   YFPLR+G  V LYQDAHV EG+LP I L  G  Y+ G CW D+ H
Sbjct: 270 SGVGAGPYYQGVPGTYFPLREGGSVTLYQDAHVPEGMLPGIKLGNGMCYEHGKCWHDMFH 329

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AI +A  LIYI GWSV+H ++L+R++  P     +  LGELL+ KS+EGVRVLLLVWDD 
Sbjct: 330 AICQARRLIYITGWSVWHNVRLVRDKEDP---SSECRLGELLRSKSQEGVRVLLLVWDDP 386

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQK 369
           TS + LG  T GVM THDEET++FFK SSV  +L PR A  + S+ KQ+ VGTI+THHQK
Sbjct: 387 TSQNILGYMTDGVMGTHDEETRRFFKDSSVQVLLCPRNAGKRHSWVKQREVGTIYTHHQK 446

Query: 370 CVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKA- 428
            ++VD  A GN RKI AF+GG+DLCDGRYDTP+H LFR L T    D+HNPT+       
Sbjct: 447 NLIVDADAGGNRRKIVAFVGGLDLCDGRYDTPQHPLFRTLQTDHNGDYHNPTFTGNVSGC 506

Query: 429 PREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISW 488
           PREPWHDLH ++DGPAAYDVL NFE+RW KA K      +  ++    DD L++I RI  
Sbjct: 507 PREPWHDLHSKIDGPAAYDVLTNFEERWLKAAK----PHRINKLKTSYDDALLRIDRI-- 560

Query: 489 ILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQ 548
              P++    +  T+             +DPE WHVQIFRSIDS SVKGFPK  +    +
Sbjct: 561 ---PDILRVLDAPTV-----------SANDPEAWHVQIFRSIDSNSVKGFPKDPKYATSK 606

Query: 549 SLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELA 608
           +L+C K+V+ID SI TAY++AIR+AQHFIYIENQYF+GSSY W ++K+ GA+NLIPME+A
Sbjct: 607 NLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFIGSSYDWNAHKDIGANNLIPMEIA 666

Query: 609 LKIASKIRANERFAV 623
           LKIA KIRA ERFA 
Sbjct: 667 LKIADKIRAKERFAA 681

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine or N-acylphosphatidylethanolamine as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|Q9T052|PLDG3_ARATH Phospholipase D gamma 3 OS=Arabidopsis thaliana GN=PLDGAMMA3 PE=2 SV=1

 Score =  592 bits (1526), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 304/618 (49%), Positives = 392/618 (63%), Gaps = 43/618 (6%)

Query: 7   SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHL-RRCFTACDVCKTPAPTHETFQDDDGV 65
           S   +V  LHG+LD+ +  A+ LPNMD     L    F                    G 
Sbjct: 36  SGSLRVELLHGNLDIWVKEAKHLPNMDGFHNTLVGGMFFGL-----------------GR 78

Query: 66  RHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQ 125
           R+       S  ITSDPYVTV +  A + RT V+ NS+ PVW +HF++P+AH  + +   
Sbjct: 79  RNHKVDGENSSKITSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAKVHFV 138

Query: 126 VKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185
           VKD D+ G+QIIG   IP   + +G  I   + I+   G P K GA + L +++ P ++ 
Sbjct: 139 VKDSDIIGSQIIGAVEIPTEQLCSGNRIEGLFPILNSRGKPCKQGAVLSLSIQYIPMERM 198

Query: 186 PLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWE 245
            LY++G+    E  GV   YFPLRKG  V LYQDAHV +G LP + LDGG  Y+ G CWE
Sbjct: 199 RLYQKGVGFGVECVGVPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWE 258

Query: 246 DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305
           D+  AI  A  LIYI GWSVFH ++L+R    P       TLGELLK KS+EGVRVL+LV
Sbjct: 259 DMADAIRRARRLIYITGWSVFHPVRLVRRNNDPT----QGTLGELLKVKSQEGVRVLVLV 314

Query: 306 WDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFT 365
           WDD TS   LG  T G+M T DEET++FFKHSSV  +L PRY     S+ K+  V TI+T
Sbjct: 315 WDDPTSRSLLGFSTKGLMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYT 374

Query: 366 HHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTY-PI 424
           HHQK ++VD +A+ N RKI AF+GG+DLC+GR+DTP+H LFR L T+ KDDFHNP +   
Sbjct: 375 HHQKTMIVDAEAAQNRRKIVAFVGGLDLCNGRFDTPKHPLFRTLKTIHKDDFHNPNFVTT 434

Query: 425 GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIG 484
               PREPWHDLH ++DGPAAYDVL NFE+RW KA+K   +     R+    DD L+++ 
Sbjct: 435 ADDGPREPWHDLHSKIDGPAAYDVLANFEERWMKASKPRGI----GRLRTSSDDSLLRLD 490

Query: 485 RISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIED 544
           RI  I+    +   N                ++DPE+WHVQ+FRSIDS SVKGFPK  ++
Sbjct: 491 RIPDIMGLSEASSAN----------------DNDPESWHVQVFRSIDSSSVKGFPKDPKE 534

Query: 545 IDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIP 604
              ++L+C K+++ID SI  AY++AIRSAQHFIYIENQYFLGSS+ W S KN GA+NLIP
Sbjct: 535 ATGRNLLCGKNILIDMSIHAAYVKAIRSAQHFIYIENQYFLGSSFNWDSNKNLGANNLIP 594

Query: 605 MELALKIASKIRANERFA 622
           ME+ALKIA+KIRA E+FA
Sbjct: 595 MEIALKIANKIRAREKFA 612

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine but prefers ethanolamine-containing lipids as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|Q9T051|PLDG2_ARATH Phospholipase D gamma 2 OS=Arabidopsis thaliana GN=PLDGAMMA2 PE=1 SV=3

 Score =  579 bits (1492), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 299/617 (48%), Positives = 393/617 (63%), Gaps = 49/617 (7%)

Query: 12  VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKI 71
           V  LHG+LD+ +  A+ LPNM      L    +  ++ +         +  DG       
Sbjct: 31  VELLHGNLDIWVKEAKHLPNMICYRNKLVGGISFSELGRR-------IRKVDG------- 76

Query: 72  IRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDV 131
             KS   TSDPYVTV +  A + RT V+ NS+ PVW +HF++P+AH  + +   VKD+D 
Sbjct: 77  -EKSSKFTSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFVVKDNDP 135

Query: 132 FGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQG 191
            G++IIG   IP   + +G  I   + I+  SG P + GA + L +++TP ++  LY++G
Sbjct: 136 IGSKIIGVVGIPTKQLCSGNRIEGLFPILNSSGKPCRKGAMLSLSIQYTPMERMRLYQKG 195

Query: 192 IAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAI 251
           +    E  GV   YFPLRKG  V LYQDAHV +G LP + LDGG  Y+ G CWED+  AI
Sbjct: 196 VGSGVECVGVPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWEDMADAI 255

Query: 252 SEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTS 311
             A  LIYI GWSVFH ++L+R    P     + TLGELLK KS+EGVRVL+LVWDD TS
Sbjct: 256 RRARRLIYITGWSVFHPVRLVRRNNDPT----EGTLGELLKVKSQEGVRVLVLVWDDPTS 311

Query: 312 HDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCV 371
               G  T G+M T DEET++FFKHSSV  +L PRY     S+ K+  V TI+THHQK +
Sbjct: 312 MSFPGFSTKGLMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYTHHQKTM 371

Query: 372 LVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTK--AP 429
           +VD +A+ N RKI AF+GG+DLC+GR+DTP+H LF  L T+ KDDFHNP + + T+   P
Sbjct: 372 IVDAEAAQNRRKIVAFVGGLDLCNGRFDTPKHSLFGTLKTLHKDDFHNPNF-VTTEDVGP 430

Query: 430 REPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWR---DDYLIKIGRI 486
           REPWHDLH ++DGPAAYDVL NFE+RW        +  K + +   R   DD L++I RI
Sbjct: 431 REPWHDLHSKIDGPAAYDVLANFEERW--------MASKPRGIGKGRTSFDDSLLRINRI 482

Query: 487 SWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDID 546
             I+    +   N                ++DPE+WHVQ+FRSIDS SVKGFPK  E+  
Sbjct: 483 PDIMGLSEASSAN----------------DNDPESWHVQVFRSIDSTSVKGFPKDPEEAT 526

Query: 547 DQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPME 606
            ++L+C K+++ID SI  AY++AIRSAQHFIYIENQYFLGSS+ W S K+ GA+NLIPME
Sbjct: 527 GRNLLCGKNILIDMSIHAAYVKAIRSAQHFIYIENQYFLGSSFNWDSNKDLGANNLIPME 586

Query: 607 LALKIASKIRANERFAV 623
           +ALKIA+KIRA E FA 
Sbjct: 587 IALKIANKIRARENFAA 603

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine but prefers ethanolamine-containing lipids as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|P93400|PLDA1_TOBAC Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PLD1 PE=2 SV=2

 Score =  487 bits (1253), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 266/552 (48%), Positives = 342/552 (61%), Gaps = 47/552 (8%)

Query: 83  YVTVVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141
           Y TV + +A V RTR +KN    P W E F+I  AH  SN+   VKDD+  GA +IG A 
Sbjct: 50  YATVDLEKARVGRTRKIKNEPNNPRWYESFHIYCAHMASNVIFTVKDDNPIGATLIGRAY 109

Query: 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGV 201
           +P   +  GE I +W +I+    +P   G+ I ++L+F    ++P + +GI    ++ GV
Sbjct: 110 VPVEELLEGEEIDKWVEILDREMNPIAEGSKIHVKLQFFDVSRDPNWERGIRSS-KYPGV 168

Query: 202 RNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIV 261
              +F  R G  V LYQDAHV +  +P+IPL GGK Y+P  CWEDI  AI  A HLIYI 
Sbjct: 169 PYTFFAQRTGCRVSLYQDAHVPDNFIPKIPLSGGKYYEPHRCWEDIFDAIINAKHLIYIT 228

Query: 262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
           GWSV+ +I L+R+  R  P GGD+TLGELLK K+ EGV+VL+LVWDD+TS   L  K  G
Sbjct: 229 GWSVYTEITLVRDSRRQKP-GGDITLGELLKKKASEGVKVLMLVWDDRTSVGLL--KKDG 285

Query: 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ---AS 378
           +MATHD+ET++FF+ + VNCVL PR      S  +   +GT+FTHHQK V+VD++     
Sbjct: 286 LMATHDQETEQFFQGTEVNCVLCPRNPDDGGSIVQSLQIGTMFTHHQKIVVVDSELPSGE 345

Query: 379 GNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGT---KAPREPWHD 435
              R+I +F+GGIDLCDGRYDTP H LFR LDT   DDFH P +P G      PREPWHD
Sbjct: 346 SEKRRILSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPDGAITKGGPREPWHD 405

Query: 436 LHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELS 495
           +H RL+GP A+DVL NFEQRWRK     ++   F+ +    DD +I         SP + 
Sbjct: 406 IHSRLEGPIAWDVLFNFEQRWRKQGG-KDVLVNFREL----DDIIIP-------PSPVMH 453

Query: 496 LKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKD 555
           L                    DD E W+VQ+FRSID G+  GFP++ ED     L+   D
Sbjct: 454 L--------------------DDSETWNVQLFRSIDEGAAFGFPETPEDAAKAGLVSGXD 493

Query: 556 VVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPS----YKNAGADNLIPMELALKI 611
            +ID+SIQ AYI AIR A++FIYIENQYFLGSSY W S     ++ GA ++IP ELALKI
Sbjct: 494 NIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSYDWQSDDIKVEDIGALHVIPKELALKI 553

Query: 612 ASKIRANERFAV 623
            SKI A ERF V
Sbjct: 554 VSKIEAGERFTV 565

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes.

Nicotiana tabacum (taxid: 4097)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|Q41142|PLDA1_RICCO Phospholipase D alpha 1 OS=Ricinus communis GN=PLD1 PE=1 SV=1

 Score =  479 bits (1232), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/552 (46%), Positives = 340/552 (61%), Gaps = 47/552 (8%)

Query: 83  YVTVVVPQATVARTRVLKNSQ-EPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141
           Y T+ + +A V RTR+L+N Q  P W E F++  AH  SN+   VKDD+  GA +IG A 
Sbjct: 50  YATIDLEKARVGRTRILENEQSNPRWYESFHVYCAHQASNVIFTVKDDNPIGATLIGRAY 109

Query: 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGV 201
           +P   +  GE I RW +I+    +P   G+ I ++L++    K+  + QGI    ++ GV
Sbjct: 110 VPVEELLDGEEIDRWVEILDEDKNPVHSGSKIHVKLQYFEVTKDRNWGQGIRSS-KYPGV 168

Query: 202 RNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIV 261
              YF  R+G  V LYQDAH+ +  +P+IPL GG  Y+P  CWED+  AI+ A HLIYI 
Sbjct: 169 PYTYFSQRQGCKVSLYQDAHIPDKFVPQIPLAGGNYYEPHRCWEDVFDAITNAKHLIYIT 228

Query: 262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
           GWSV+ +I LIR+  RP P GGD+TLGELLK K+ EGVRVL+LVWDD+TS   L  K  G
Sbjct: 229 GWSVYTEISLIRDSRRPKP-GGDITLGELLKKKASEGVRVLMLVWDDRTSVGLL--KKDG 285

Query: 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDT---QAS 378
           +MATHDEET+ FF+++ V+CVL PR      S+ +   + T+FTHHQK V+VD+      
Sbjct: 286 LMATHDEETEHFFQNTDVHCVLCPRNPDDGGSFVQDLQISTMFTHHQKIVVVDSAMPNGD 345

Query: 379 GNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYP---IGTKAPREPWHD 435
              R+I +F+GG+DLCDGRYD+P H LFR LD+   DDFH P +    I    PREPWHD
Sbjct: 346 SQRRRIVSFVGGLDLCDGRYDSPFHSLFRTLDSAHHDDFHQPNFAGASIEKGGPREPWHD 405

Query: 436 LHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELS 495
           +H RL+GP A+DVL NFEQRWRK                   D LI++  +  ++ P   
Sbjct: 406 IHSRLEGPIAWDVLFNFEQRWRKQGG---------------KDLLIQLRELEDVIIPPSP 450

Query: 496 LKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKD 555
                            V   DD E W+VQ+FRSID G+  GFP++ ED  +  L+  KD
Sbjct: 451 -----------------VMYPDDFEAWNVQLFRSIDGGAAFGFPETPEDAPEAGLVSGKD 493

Query: 556 VVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWP----SYKNAGADNLIPMELALKI 611
            +ID+SIQ AYI AIR A++FIYIENQYFLGSS+ W       ++  A +LIP EL+LKI
Sbjct: 494 NIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFGWSPDGIKPEDINALHLIPKELSLKI 553

Query: 612 ASKIRANERFAV 623
            SKI A ERF V
Sbjct: 554 LSKIAAGERFTV 565

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence.

Ricinus communis (taxid: 3988)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|P86387|PLDA1_CARPA Phospholipase D alpha 1 OS=Carica papaya GN=PLD1 PE=1 SV=1

 Score =  474 bits (1219), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/552 (46%), Positives = 341/552 (61%), Gaps = 47/552 (8%)

Query: 83  YVTVVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141
           Y T+ + +A V RTR++K+    P W E F+I  AH  SN+   VKDD+  GA +IG A 
Sbjct: 50  YATIDLERARVGRTRIIKDEPNNPKWYESFHIYCAHMASNVVFTVKDDNPIGATLIGRAY 109

Query: 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGV 201
           +P   +  G+ + RW +I+    +P +  + I ++L+F    K+  +  GI G   + GV
Sbjct: 110 VPVEELIRGDQVDRWVEILDEDKNPIEGDSKIHVKLQFFDVKKDSNWNMGIKG-ARYLGV 168

Query: 202 RNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIV 261
              ++  R+G  V LYQDAHV +G +P+IPL GGK Y+P  CWED+  AI+ A HLIYI 
Sbjct: 169 PYTFYSQRRGCRVSLYQDAHVPDGFIPKIPLAGGKYYEPHRCWEDVFDAITNARHLIYIT 228

Query: 262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
           GWSV+ +I LIR+  RP P GGD+TLGELLK K+ EGV+VL+LVWDD+TS   L  K  G
Sbjct: 229 GWSVYTEITLIRDSRRPKP-GGDVTLGELLKQKASEGVKVLMLVWDDRTSVGLL--KKDG 285

Query: 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA-SGN 380
           +MATHDEET  +F+++ V+CVL PR      S+ +   + T+FTHHQK V+VD +  SG 
Sbjct: 286 LMATHDEETANYFQNTDVHCVLCPRNPDDGGSFVQGLQISTMFTHHQKIVVVDGEMPSGE 345

Query: 381 N--RKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYP---IGTKAPREPWHD 435
           +  R+I +F+GGIDLCDGRYDTP H LFR LDT   DDFH P +    I    PREPWHD
Sbjct: 346 SQMRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFAGSSITKGGPREPWHD 405

Query: 436 LHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELS 495
           +H RL+GP A+DVL NFEQRWR+                   D L+ +  +  I+ P   
Sbjct: 406 IHSRLEGPVAWDVLFNFEQRWRQQGG---------------KDVLVNLRELDNIIIPP-- 448

Query: 496 LKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKD 555
                  + P           DD E W+VQ+FRSID G+  GFP++ E+     L+  KD
Sbjct: 449 ----SPVMFP-----------DDHETWNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKD 493

Query: 556 VVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPS----YKNAGADNLIPMELALKI 611
            +ID+SIQ AYI AIR A++FIYIENQYFLGSS+ W S     ++  A +LIP EL+LKI
Sbjct: 494 NIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFDWSSDDIKREDINALHLIPKELSLKI 553

Query: 612 ASKIRANERFAV 623
            SKI   ERF V
Sbjct: 554 VSKIERGERFTV 565

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes.

Carica papaya (taxid: 3649)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|O04865|PLDA1_VIGUN Phospholipase D alpha 1 OS=Vigna unguiculata GN=PLD1 PE=2 SV=1

 Score =  472 bits (1215), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/553 (47%), Positives = 343/553 (62%), Gaps = 48/553 (8%)

Query: 83  YVTVVVPQATVARTRVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141
           Y T+ + +A V RTR+++N +  P WNE F+I   H  SN+   VKDD+  GA +IG A 
Sbjct: 50  YATIDLEKARVGRTRIIENETTNPKWNESFHIYCGHLASNIIFTVKDDNPIGATLIGRAY 109

Query: 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGV 201
           +P   +  G  I +W +I+    +P + G+ I + L++    K+  + +GI   P++ GV
Sbjct: 110 VPVSEVLDGHEIDKWVEILDTEKNPIEGGSKIHVRLQYFDVLKDRNWARGIR-SPKYPGV 168

Query: 202 RNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIV 261
              +F  R+G  V LYQDAHV +  +P+IPL GGK Y+   CWEDI  AI+ A HLIYI 
Sbjct: 169 PYTFFSQRQGCKVFLYQDAHVPDNFVPKIPLAGGKNYEAHRCWEDIFDAITNAKHLIYIT 228

Query: 262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
           GWSV+ +I LIR+  RP   GGD T+GELLK K+ EGVRVL+LVWDD+TS   L  K  G
Sbjct: 229 GWSVYTEISLIRDSRRP-KAGGDQTIGELLKKKASEGVRVLMLVWDDRTSVGLL--KKDG 285

Query: 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASG-- 379
           +MATHDEET++FF+ + V+CVL PR      S  +   + T+FTHHQK V+VD+   G  
Sbjct: 286 LMATHDEETEQFFRDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSALPGGG 345

Query: 380 --NNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYP---IGTKAPREPWH 434
             + R+I +F+GG+DLCDGRYDT  H LFR LDT   DDFH P +P   I    PREPWH
Sbjct: 346 GSDKRRIVSFVGGLDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWH 405

Query: 435 DLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPEL 494
           D+H R++GP A+DVL NFEQRWRK                 +D           IL+P  
Sbjct: 406 DIHSRVEGPIAWDVLFNFEQRWRKQGG--------------KD-----------ILAPLR 440

Query: 495 SLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAK 554
            L+     I+P       V+  DD E W+VQ+FRSID G+  GFP + ED     L+  K
Sbjct: 441 ELED---VIIPPSP----VTFPDDHETWNVQLFRSIDGGAAFGFPDTPEDAAKAGLVSGK 493

Query: 555 DVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPS----YKNAGADNLIPMELALK 610
           D +ID+SIQ AYI AIR A++FIYIENQYFLGSS++W +     +  GA +LIP EL+LK
Sbjct: 494 DNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFSWNNDDIKREEIGALHLIPKELSLK 553

Query: 611 IASKIRANERFAV 623
           I SKI A ERFAV
Sbjct: 554 IVSKIEAGERFAV 566

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes.

Vigna unguiculata (taxid: 3917)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	628
338795736	865	phospholipase D delta [Litchi chinensis]	0.984	0.714	0.758	0.0
333595913	865	phospholipase D delta [Dimocarpus longan	0.985	0.715	0.761	0.0
312283027	860	unnamed protein product [Thellungiella h	0.977	0.713	0.743	0.0
359496145	872	PREDICTED: phospholipase D delta-like [V	0.984	0.708	0.721	0.0
23477711	849	phospholipase D delta isoform [Gossypium	0.960	0.710	0.744	0.0
22795060	849	phospholipase D delta isoform 1b [Gossyp	0.960	0.710	0.744	0.0
297798338	869	atplddelta [Arabidopsis lyrata subsp. ly	0.974	0.704	0.734	0.0
296084063	1607	unnamed protein product [Vitis vinifera]	0.971	0.379	0.723	0.0
30690488	857	phospholipase D delta [Arabidopsis thali	0.974	0.714	0.736	0.0
30690492	693	phospholipase D delta [Arabidopsis thali	0.974	0.883	0.736	0.0

>gi|338795736|gb|AEI99558.1| phospholipase D delta [Litchi chinensis]

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/626 (75%), Positives = 531/626 (84%), Gaps = 8/626 (1%)

Query: 2   AAGDD-SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQ 60
           AAG+D S K +  YLHGDLDLKII ARRLPNMD+++ + RRCFTACD C+ P P+     
Sbjct: 3   AAGEDKSVKGQGTYLHGDLDLKIIAARRLPNMDVVASNFRRCFTACDACRPPHPSSRPPS 62

Query: 61  -DDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL 119
              DG    S      KIIT+DPYVTVVVPQATVARTRVLKN+Q P W+EHF IPLAHP+
Sbjct: 63  VHGDGDNKKSH----HKIITTDPYVTVVVPQATVARTRVLKNTQSPHWDEHFVIPLAHPV 118

Query: 120 SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179
            +LE QVKDDDVFGA++IG A IPA  IA G++IS W+ II   G PP+  A+I+LE+KF
Sbjct: 119 VDLEFQVKDDDVFGAELIGKAKIPASLIAAGDVISDWFPIINAKGQPPRLDAAIRLEMKF 178

Query: 180 TPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYK 239
           TPC++NPLYR G+AGDPE  GVR  YFPLRKG  + LYQDAHV  G LPE+ LDG   YK
Sbjct: 179 TPCEENPLYRHGVAGDPEQSGVRRTYFPLRKGCQLTLYQDAHVKPGQLPEVKLDGHVDYK 238

Query: 240 PGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGV 299
             TCWEDIC+AISEAHHL+YIVGWSVF+KIKLIRE TR LPRGGDLTLGELLKYKSEEGV
Sbjct: 239 ADTCWEDICYAISEAHHLVYIVGWSVFYKIKLIREPTRQLPRGGDLTLGELLKYKSEEGV 298

Query: 300 RVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQI 359
           R+LLLVWDDKTSHDK GVKT GVM THDEET+KFFKHSSVNCVLAPRYASSKL  FKQQ+
Sbjct: 299 RILLLVWDDKTSHDKFGVKTGGVMGTHDEETRKFFKHSSVNCVLAPRYASSKLGIFKQQV 358

Query: 360 VGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHN 419
           VGT+FTHHQKCV+VDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDL+T+F+ DFHN
Sbjct: 359 VGTMFTHHQKCVIVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLNTIFEGDFHN 418

Query: 420 PTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDY 479
           PTYP   KAPR+PWHDLHCR+DGPAAYDVLINFEQRWRK+TK  E + KFK+VSHW DD 
Sbjct: 419 PTYPSTVKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKSTKWKEFSLKFKKVSHWHDDS 478

Query: 480 LIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFP 539
           LIKI RISWILSPELS    GTTIVP DD +VRVS E +PENWHVQ+FRSIDSGS+KGFP
Sbjct: 479 LIKIERISWILSPELSSTREGTTIVPTDDRIVRVSDEKNPENWHVQVFRSIDSGSLKGFP 538

Query: 540 KS--IEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNA 597
           KS  I+ I++Q+L+CAKD+VI+KSIQ AYIQAIRSAQH+IYIENQYFLGSSYAWPSYK+A
Sbjct: 539 KSINIKQIEEQNLLCAKDLVIEKSIQAAYIQAIRSAQHYIYIENQYFLGSSYAWPSYKDA 598

Query: 598 GADNLIPMELALKIASKIRANERFAV 623
           GADNLIPMELALKIASKIRA ERFAV
Sbjct: 599 GADNLIPMELALKIASKIRAKERFAV 624

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333595913|gb|AEF58504.1| phospholipase D delta [Dimocarpus longan]

 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/625 (76%), Positives = 528/625 (84%), Gaps = 6/625 (0%)

Query: 2   AAGDD-SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQ 60
           AAG+D S K +VIYLHGDLDLKII ARRLPNMD+++  LRRCFTACD C TP        
Sbjct: 3   AAGEDKSVKGQVIYLHGDLDLKIIGARRLPNMDVVANSLRRCFTACDAC-TPPQPSSRSP 61

Query: 61  DDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLS 120
             DG  +  K  RK  IIT+DPYVTVVVPQATVARTRVLKN+Q P W+EHF IPLAHP+ 
Sbjct: 62  SIDGDGYDKKSHRK--IITTDPYVTVVVPQATVARTRVLKNTQSPHWDEHFVIPLAHPVV 119

Query: 121 NLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180
           ++E QVKDDDVFGA++IG A IPA  IA GE IS W+ II   G PPK  ++I+LE+KFT
Sbjct: 120 DVEFQVKDDDVFGAELIGMAKIPASKIAAGEHISGWFPIINAKGQPPKLDSAIRLEMKFT 179

Query: 181 PCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKP 240
           PC++NPLYR G+AGDPE  GVR  YFPLRKG  ++LYQDAHV  G LPE+ L+G   Y  
Sbjct: 180 PCEENPLYRHGVAGDPEQSGVRRTYFPLRKGCQLKLYQDAHVKPGQLPEVKLNGHVDYTA 239

Query: 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVR 300
           GTCWEDIC+AISEAHHL+YIVGWSVF+KIKLIRE TR LPRGGDLTLGELLKYKSEEGVR
Sbjct: 240 GTCWEDICYAISEAHHLVYIVGWSVFYKIKLIREPTRELPRGGDLTLGELLKYKSEEGVR 299

Query: 301 VLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIV 360
           +LLLVWDDKTSHDK G+KT GVM THDEET K+FKHSSVNCVLAPRYASSKL  FKQQ+V
Sbjct: 300 ILLLVWDDKTSHDKFGIKTGGVMGTHDEETLKYFKHSSVNCVLAPRYASSKLGIFKQQVV 359

Query: 361 GTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNP 420
           GT+FTHHQKCVLVDTQA GNNRKITAFIGGIDLCDGRYDTPEHRLFRDL+T+F+ DFHNP
Sbjct: 360 GTMFTHHQKCVLVDTQAFGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLNTIFEGDFHNP 419

Query: 421 TYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYL 480
           TYP   KAPR+PW DLHCR+DGPAAYDVLINFEQRWRK+TK  E + KFK+VSHW DD L
Sbjct: 420 TYPSTVKAPRQPWRDLHCRIDGPAAYDVLINFEQRWRKSTKWKEFSLKFKKVSHWHDDSL 479

Query: 481 IKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPK 540
           IKI RISWILSPELS    GTTIVP DD +VRVS E +PENWHVQ+FRSIDSGSVKGFPK
Sbjct: 480 IKIERISWILSPELSSTREGTTIVPTDDRIVRVSDEKNPENWHVQVFRSIDSGSVKGFPK 539

Query: 541 S--IEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAG 598
           S  I+ I +Q+L+CAKD+VI+KSIQ AYIQAIRSAQH+IYIENQYFLGSSYAWPSYK AG
Sbjct: 540 SINIKQIGEQNLLCAKDLVIEKSIQAAYIQAIRSAQHYIYIENQYFLGSSYAWPSYKFAG 599

Query: 599 ADNLIPMELALKIASKIRANERFAV 623
           ADNLIPMELALKIASKIRA ERFAV
Sbjct: 600 ADNLIPMELALKIASKIRAKERFAV 624

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283027|dbj|BAJ34379.1| unnamed protein product [Thellungiella halophila]

 Score =  970 bits (2508), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/615 (74%), Positives = 521/615 (84%), Gaps = 1/615 (0%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           + V+ LHGDLDLKI++ARRLPNMDM SEH+RRCFT C+ C TP    +    D G +   
Sbjct: 7   DDVMLLHGDLDLKIVQARRLPNMDMFSEHMRRCFTVCNSCTTPTDDEDPRDRDGGAKSGD 66

Query: 70  KIIR-KSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKD 128
           + IR   K+ITSDPYVTVVVPQAT+ARTRVLKN+Q+P+W+EHF I +AHPLS LE QVKD
Sbjct: 67  RNIRGHRKVITSDPYVTVVVPQATLARTRVLKNAQDPLWDEHFVISVAHPLSYLEFQVKD 126

Query: 129 DDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLY 188
           DDVFGAQIIGTA IP   IA+GE IS W+ ++  SG PPK   ++ +++KFTP D+   Y
Sbjct: 127 DDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKKETALFIDMKFTPFDQIHTY 186

Query: 189 RQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDIC 248
           R GIAGDP+ KGV+  YFP+RKGS VRLYQDAHV +G+LPEI LD GK+Y+ G CWEDIC
Sbjct: 187 RTGIAGDPDRKGVKRTYFPVRKGSQVRLYQDAHVMDGMLPEIGLDNGKVYQHGKCWEDIC 246

Query: 249 HAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDD 308
           +A+SEAHH+IYIVGWSVFHK+KL+RE TR LPRGGDLTLGELLKYKSEEGVRVLLLVWDD
Sbjct: 247 YAVSEAHHMIYIVGWSVFHKVKLVREPTRKLPRGGDLTLGELLKYKSEEGVRVLLLVWDD 306

Query: 309 KTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQ 368
           KTSHDK G+ T GVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ+VGT+FTHHQ
Sbjct: 307 KTSHDKFGISTAGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQVVGTLFTHHQ 366

Query: 369 KCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKA 428
           KCVLVDTQA GNNRK+TAFIGGIDLCDGRYDTPEHR+ RDLD+VFKDDFHNPT+P GTKA
Sbjct: 367 KCVLVDTQAVGNNRKVTAFIGGIDLCDGRYDTPEHRILRDLDSVFKDDFHNPTFPAGTKA 426

Query: 429 PREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISW 488
           PR+PWHDLHCRL+GPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD LI+IGRISW
Sbjct: 427 PRQPWHDLHCRLEGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDALIRIGRISW 486

Query: 489 ILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQ 548
           ILSP      +GT+IVP DD VV VSKEDDPENWHVQ+FRSIDSGSVKGFPK  ++ + Q
Sbjct: 487 ILSPVFKYLKDGTSIVPEDDPVVYVSKEDDPENWHVQVFRSIDSGSVKGFPKYEDEAEAQ 546

Query: 549 SLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELA 608
            L CAK +V+DKSIQTAYIQ IRSAQHFIYIENQYFLGSSYAWPSYK+AGADNLIPMELA
Sbjct: 547 HLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYKDAGADNLIPMELA 606

Query: 609 LKIASKIRANERFAV 623
           LKI SKIRA ERFAV
Sbjct: 607 LKIVSKIRAKERFAV 621

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496145|ref|XP_002270350.2| PREDICTED: phospholipase D delta-like [Vitis vinifera]

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/624 (72%), Positives = 529/624 (84%), Gaps = 6/624 (0%)

Query: 6   DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQ---DD 62
           D+  ++VIYLHGDLDLKI++AR LPNMD+++EH+RRCFT CD CKTP+   +      DD
Sbjct: 3   DTASQRVIYLHGDLDLKILKARDLPNMDLVTEHVRRCFTLCDACKTPSAGKDVSTPDTDD 62

Query: 63  DGVRHT---SKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL 119
              RH     ++    KIITSDPYVTV VPQATVARTRV+ N+Q P WNE+F I LAHP+
Sbjct: 63  RPARHKPGDKRLDHHRKIITSDPYVTVCVPQATVARTRVISNTQNPYWNENFYISLAHPV 122

Query: 120 SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179
           +NLE QVKD+D+FGA++IG A IPA  IATGE IS W+ +I  +G  PKP  ++Q+E+KF
Sbjct: 123 ANLEFQVKDNDLFGAEVIGVARIPAERIATGEHISGWFPVIGANGKQPKPTTALQIEIKF 182

Query: 180 TPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYK 239
           TP ++NP YR GIAGDPEH GVR+ YFPLRKG    LYQDAHV EG+LP+I +DGG++Y+
Sbjct: 183 TPFEQNPFYRTGIAGDPEHLGVRHTYFPLRKGGLATLYQDAHVPEGLLPDIEVDGGQVYR 242

Query: 240 PGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGV 299
             TCWEDICHAI EAHH++YIVGWS++HK+KLIRE TRPLPRGGDLTLG+LLKYKSEEGV
Sbjct: 243 HETCWEDICHAIVEAHHMVYIVGWSIYHKVKLIREPTRPLPRGGDLTLGDLLKYKSEEGV 302

Query: 300 RVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQI 359
           RVL+LVWDD+TSHDK  + T GVM THDEET+KFFKHSSV CVL+PRYASSKLS+ KQQ+
Sbjct: 303 RVLMLVWDDRTSHDKFFINTKGVMETHDEETRKFFKHSSVICVLSPRYASSKLSFIKQQV 362

Query: 360 VGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHN 419
           VGTIFTHHQKCVLVD+QA GNNRKITAF+GGIDLCDGRYDTPEHRLF+DLDTVF +DFHN
Sbjct: 363 VGTIFTHHQKCVLVDSQAHGNNRKITAFLGGIDLCDGRYDTPEHRLFKDLDTVFNEDFHN 422

Query: 420 PTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDY 479
           PT+P G+KAPR+PWHDLHC+++GPAAYDVLINFEQRW+KATK TE     K++SHW DD 
Sbjct: 423 PTFPAGSKAPRQPWHDLHCKIEGPAAYDVLINFEQRWKKATKWTEFGLHLKKISHWHDDA 482

Query: 480 LIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFP 539
           LIKI RISWILSP      +  T VP+DD  + V+KEDDPENWHVQ+FRSIDSGS+KGFP
Sbjct: 483 LIKIDRISWILSPPSGSDGDDVTSVPKDDPSLWVTKEDDPENWHVQVFRSIDSGSLKGFP 542

Query: 540 KSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGA 599
           K+++  ++Q+LICAK++VIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYK+AGA
Sbjct: 543 KTVDTAENQNLICAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKDAGA 602

Query: 600 DNLIPMELALKIASKIRANERFAV 623
           DNLIPMELALKIASKIRA ERFAV
Sbjct: 603 DNLIPMELALKIASKIRAKERFAV 626

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23477711|gb|AAN34820.1| phospholipase D delta isoform [Gossypium hirsutum]

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/611 (74%), Positives = 515/611 (84%), Gaps = 8/611 (1%)

Query: 13  IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKII 72
           IYLHGDLDL I+ ARRLPNMD M  HLR C T C+ CK+PA T     D       SKI 
Sbjct: 9   IYLHGDLDLTIVEARRLPNMDFMVNHLRSCLT-CEPCKSPAQTAAKEGD-------SKIR 60

Query: 73  RKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF 132
              KIITSDPYVTV +PQATVARTRVLKNSQ P WNEHF IPLAHP++ L+I VKD+D+F
Sbjct: 61  GHRKIITSDPYVTVCLPQATVARTRVLKNSQNPKWNEHFIIPLAHPVTELDINVKDNDLF 120

Query: 133 GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGI 192
           GA  IGTA IPA  IATGE I+ W+ +I PSG PPKP ++I L++KFTPC+ NPLY+QG+
Sbjct: 121 GADAIGTAKIPASRIATGEHITGWFPLIGPSGKPPKPDSAIYLDMKFTPCENNPLYKQGV 180

Query: 193 AGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAIS 252
           A DPE  GVR+ YFPLRKGS V LYQDAHVT+ +LP+I LD GK+Y P  CWEDIC+AIS
Sbjct: 181 ASDPEQAGVRHTYFPLRKGSQVTLYQDAHVTDDLLPKIELDDGKVYSPAKCWEDICYAIS 240

Query: 253 EAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH 312
           EAHHL+YIVGWSVFHK+KL+RE TRP PRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH
Sbjct: 241 EAHHLVYIVGWSVFHKVKLVREPTRPFPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH 300

Query: 313 DKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVL 372
           DK G++T GVM THDEET KFFKHSSV CVLAPRYASSKL YFKQQ+VGT+FTHHQKCVL
Sbjct: 301 DKFGIRTAGVMQTHDEETLKFFKHSSVTCVLAPRYASSKLGYFKQQVVGTMFTHHQKCVL 360

Query: 373 VDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREP 432
           VDTQA+GNNRKITAF+GGIDLCDGRYDTPEHR+ RDLDTVFKDDFHNPT+P+GT APR+P
Sbjct: 361 VDTQAAGNNRKITAFVGGIDLCDGRYDTPEHRILRDLDTVFKDDFHNPTFPVGTMAPRQP 420

Query: 433 WHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSP 492
           WHDLH +++GPAAYDVLINFEQRWRK+TK  E +  FK  SHW DD +I+I RISWI SP
Sbjct: 421 WHDLHSKIEGPAAYDVLINFEQRWRKSTKWKEFSLLFKGKSHWSDDAMIRIERISWIQSP 480

Query: 493 ELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552
            L++  +GTTIVP DD  V V  +D+ ENW+VQIFRSIDSGS+KGFPK I+  ++Q+  C
Sbjct: 481 PLAVTDDGTTIVPDDDPKVHVLSKDNRENWNVQIFRSIDSGSLKGFPKYIKKAENQNFFC 540

Query: 553 AKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIA 612
           AK++VIDKSIQ AYIQAIRSAQH+IYIENQYFLGSSYAWPSYKNAGADNLIPMELALK+A
Sbjct: 541 AKNLVIDKSIQAAYIQAIRSAQHYIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKVA 600

Query: 613 SKIRANERFAV 623
           SKIRA ERFAV
Sbjct: 601 SKIRAGERFAV 611

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22795060|gb|AAN05432.1| phospholipase D delta isoform 1b [Gossypium hirsutum]

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/611 (74%), Positives = 515/611 (84%), Gaps = 8/611 (1%)

Query: 13  IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKII 72
           IYLHGDLDL I+ ARRLPNMD M  HLR C T C+ CK+PA T     D       SKI 
Sbjct: 9   IYLHGDLDLTIVEARRLPNMDFMVNHLRSCLT-CEPCKSPAQTAAKEGD-------SKIR 60

Query: 73  RKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF 132
              KIITSDPYVTV +PQATVARTRVLKNSQ P WNEHF IPLAHP++ L+I VKD+D+F
Sbjct: 61  GHRKIITSDPYVTVCLPQATVARTRVLKNSQNPKWNEHFIIPLAHPVTELDINVKDNDLF 120

Query: 133 GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGI 192
           GA  IGTA IPA  IATGE I+ W+ +I PSG PPKP ++I L++KFTPC+ NPLY+QG+
Sbjct: 121 GADAIGTAKIPASRIATGEHITGWFPLIGPSGKPPKPDSAIYLDMKFTPCENNPLYKQGV 180

Query: 193 AGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAIS 252
           A DPE  GVR+ YFPLRKGS V LYQDAHVT+ +LP+I LD GK+Y P  CWEDIC+AIS
Sbjct: 181 ASDPEQAGVRHTYFPLRKGSQVTLYQDAHVTDDLLPKIELDDGKVYSPAKCWEDICYAIS 240

Query: 253 EAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH 312
           EAHHL+YIVGWSVFHK+KL+RE TRP PRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH
Sbjct: 241 EAHHLVYIVGWSVFHKVKLVREPTRPFPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH 300

Query: 313 DKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVL 372
           DK G++T GVM THDEET KFFKHSSV CVLAPRYASSKL YFKQQ+VGT+FTHHQKCVL
Sbjct: 301 DKFGIRTAGVMQTHDEETLKFFKHSSVTCVLAPRYASSKLGYFKQQVVGTMFTHHQKCVL 360

Query: 373 VDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREP 432
           VDTQA+GNNRKITAF+GGIDLCDGRYDTPEHR+ RDLDTVFKDDFHNPT+P+GT APR+P
Sbjct: 361 VDTQAAGNNRKITAFVGGIDLCDGRYDTPEHRILRDLDTVFKDDFHNPTFPVGTMAPRQP 420

Query: 433 WHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSP 492
           WHDLH +++GPAAYDVLINFEQRWRK+TK  E +  FK  SHW DD +I+I RISWI SP
Sbjct: 421 WHDLHSKIEGPAAYDVLINFEQRWRKSTKWKEFSLLFKGKSHWSDDAMIRIERISWIQSP 480

Query: 493 ELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552
            L++  +GTTIVP DD  V V  +D+ ENW+VQIFRSIDSGS+KGFPK I+  ++Q+L C
Sbjct: 481 PLAVTDDGTTIVPDDDPKVHVLSKDNRENWNVQIFRSIDSGSLKGFPKYIKKAENQNLFC 540

Query: 553 AKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIA 612
           AK++VIDKSIQ  YIQAIRSAQH+IYIENQYFLGSSYAWPSYKNAGADNLIPMELALK+A
Sbjct: 541 AKNLVIDKSIQAVYIQAIRSAQHYIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKVA 600

Query: 613 SKIRANERFAV 623
           SKIRA ERFAV
Sbjct: 601 SKIRAGERFAV 611

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798338|ref|XP_002867053.1| atplddelta [Arabidopsis lyrata subsp. lyrata] gi|297312889|gb|EFH43312.1| atplddelta [Arabidopsis lyrata subsp. lyrata]

 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/626 (73%), Positives = 519/626 (82%), Gaps = 14/626 (2%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct: 7   EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRVFTACNACARP--TDDVDPRDGGEVGDK 64

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
            I    K+ITSDPYVTVVVPQAT+ARTRVLKNSQ+P+W+EHFNI +AHPL+ LE QVKDD
Sbjct: 65  NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQDPLWDEHFNISVAHPLAYLEFQVKDD 124

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DVFGAQIIGTA IP   IA+GE IS W+ I+  SG PPK   ++ +++KFTP D+   YR
Sbjct: 125 DVFGAQIIGTAKIPVRDIASGERISGWFPILGASGKPPKAETALFIDMKFTPFDQIHSYR 184

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            GIAGDP+ KGV+  YFPLRKGS VRLYQDAHV +G+LPEI LD GK+Y+ G CWEDIC+
Sbjct: 185 CGIAGDPDRKGVKRTYFPLRKGSQVRLYQDAHVMDGMLPEIGLDNGKVYQHGKCWEDICY 244

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           A+SEAHH+IY+VGWSVFHKIKL+RE TR LPRGGDLTLGELLKYKSEEGVRVLLLVWDDK
Sbjct: 245 AVSEAHHMIYVVGWSVFHKIKLVREPTRKLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 304

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ----------- 358
           TSHDK G+ TPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ           
Sbjct: 305 TSHDKFGISTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYMVM 364

Query: 359 -IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDF 417
            +VGT+FTHHQKCVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+ +DLDTVFKDDF
Sbjct: 365 TVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILKDLDTVFKDDF 424

Query: 418 HNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRD 477
           HNPT+P GTKAPR+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+D
Sbjct: 425 HNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQD 484

Query: 478 DYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKG 537
           D LI+IGRISWILSP      +GTTI+P DD  V VSKEDDPENWHVQIFRSIDSGSVKG
Sbjct: 485 DALIRIGRISWILSPVFKFLKDGTTIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKG 544

Query: 538 FPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNA 597
           FPK  ++ + Q L CAK +V+DKSIQTAYIQ IRSAQHFIYIENQYFLGSSYAWPSY++A
Sbjct: 545 FPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDA 604

Query: 598 GADNLIPMELALKIASKIRANERFAV 623
           GADNLIPMELALKI SKIRA ERFAV
Sbjct: 605 GADNLIPMELALKIVSKIRAKERFAV 630

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084063|emb|CBI24451.3| unnamed protein product [Vitis vinifera]

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/618 (72%), Positives = 527/618 (85%), Gaps = 8/618 (1%)

Query: 6    DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGV 65
            D+  ++VIYLHGDLDLKI++AR LPNMD+++EH+RRCFT CD CKTP+        D G 
Sbjct: 675  DTASQRVIYLHGDLDLKILKARDLPNMDLVTEHVRRCFTLCDACKTPSAG-----KDPGD 729

Query: 66   RHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQ 125
            +   ++    KIITSDPYVTV VPQATVARTRV+ N+Q P WNE+F I LAHP++NLE Q
Sbjct: 730  K---RLDHHRKIITSDPYVTVCVPQATVARTRVISNTQNPYWNENFYISLAHPVANLEFQ 786

Query: 126  VKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185
            VKD+D+FGA++IG A IPA  IATGE IS W+ +I  +G  PKP  ++Q+E+KFTP ++N
Sbjct: 787  VKDNDLFGAEVIGVARIPAERIATGEHISGWFPVIGANGKQPKPTTALQIEIKFTPFEQN 846

Query: 186  PLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWE 245
            P YR GIAGDPEH GVR+ YFPLRKG    LYQDAHV EG+LP+I +DGG++Y+  TCWE
Sbjct: 847  PFYRTGIAGDPEHLGVRHTYFPLRKGGLATLYQDAHVPEGLLPDIEVDGGQVYRHETCWE 906

Query: 246  DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305
            DICHAI EAHH++YIVGWS++HK+KLIRE TRPLPRGGDLTLG+LLKYKSEEGVRVL+LV
Sbjct: 907  DICHAIVEAHHMVYIVGWSIYHKVKLIREPTRPLPRGGDLTLGDLLKYKSEEGVRVLMLV 966

Query: 306  WDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFT 365
            WDD+TSHDK  + T GVM THDEET+KFFKHSSV CVL+PRYASSKLS+ KQQ+VGTIFT
Sbjct: 967  WDDRTSHDKFFINTKGVMETHDEETRKFFKHSSVICVLSPRYASSKLSFIKQQVVGTIFT 1026

Query: 366  HHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIG 425
            HHQKCVLVD+QA GNNRKITAF+GGIDLCDGRYDTPEHRLF+DLDTVF +DFHNPT+P G
Sbjct: 1027 HHQKCVLVDSQAHGNNRKITAFLGGIDLCDGRYDTPEHRLFKDLDTVFNEDFHNPTFPAG 1086

Query: 426  TKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGR 485
            +KAPR+PWHDLHC+++GPAAYDVLINFEQRW+KATK TE     K++SHW DD LIKI R
Sbjct: 1087 SKAPRQPWHDLHCKIEGPAAYDVLINFEQRWKKATKWTEFGLHLKKISHWHDDALIKIDR 1146

Query: 486  ISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDI 545
            ISWILSP      +  T VP+DD  + V+KEDDPENWHVQ+FRSIDSGS+KGFPK+++  
Sbjct: 1147 ISWILSPPSGSDGDDVTSVPKDDPSLWVTKEDDPENWHVQVFRSIDSGSLKGFPKTVDTA 1206

Query: 546  DDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPM 605
            ++Q+LICAK++VIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYK+AGADNLIPM
Sbjct: 1207 ENQNLICAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKDAGADNLIPM 1266

Query: 606  ELALKIASKIRANERFAV 623
            ELALKIASKI+A ERFAV
Sbjct: 1267 ELALKIASKIKAKERFAV 1284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690488|ref|NP_849501.1| phospholipase D delta [Arabidopsis thaliana] gi|12484119|gb|AAG53975.1|AF322228_1 phospholipase D delta [Arabidopsis thaliana] gi|15987418|gb|AAL11978.1|AF306345_1 phospholipase D [Arabidopsis thaliana] gi|110742679|dbj|BAE99251.1| phospholipase D [Arabidopsis thaliana] gi|332661171|gb|AEE86571.1| phospholipase D delta [Arabidopsis thaliana]

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/614 (73%), Positives = 511/614 (83%), Gaps = 2/614 (0%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct: 7   EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDK 66

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
            I    K+ITSDPYVTVVVPQAT+ARTRVLKNSQEP+W+E FNI +AHP + LE QVKDD
Sbjct: 67  NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDD 126

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DVFGAQIIGTA IP   IA+GE IS W+ ++  SG PPK   +I +++KFTP D+   YR
Sbjct: 127 DVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            GIAGDPE +GVR  YFP+RKGS VRLYQDAHV +G LP I LD GK+Y+ G CWEDIC+
Sbjct: 187 CGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICY 246

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AISEAHH+IYIVGWS+FHKIKL+RE    +PR  D+TLGELLKYKS+EGVRVLLLVWDDK
Sbjct: 247 AISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDK 304

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQK 369
           TSHDK G+KTPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ+VGT+FTHHQK
Sbjct: 305 TSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQVVGTLFTHHQK 364

Query: 370 CVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAP 429
           CVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+  DLDTVFKDDFHNPT+P GTKAP
Sbjct: 365 CVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAP 424

Query: 430 REPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWI 489
           R+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD LI+IGRISWI
Sbjct: 425 RQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDALIRIGRISWI 484

Query: 490 LSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQS 549
           LSP      +GT+I+P DD  V VSKEDDPENWHVQIFRSIDSGSVKGFPK  ++ + Q 
Sbjct: 485 LSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQH 544

Query: 550 LICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELAL 609
           L CAK +V+DKSIQTAYIQ IRSAQHFIYIENQYFLGSSYAWPSY++AGADNLIPMELAL
Sbjct: 545 LECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELAL 604

Query: 610 KIASKIRANERFAV 623
           KI SKIRA ERFAV
Sbjct: 605 KIVSKIRAKERFAV 618

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690492|ref|NP_849502.1| phospholipase D delta [Arabidopsis thaliana] gi|332661170|gb|AEE86570.1| phospholipase D delta [Arabidopsis thaliana]

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/614 (73%), Positives = 511/614 (83%), Gaps = 2/614 (0%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct: 7   EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDK 66

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
            I    K+ITSDPYVTVVVPQAT+ARTRVLKNSQEP+W+E FNI +AHP + LE QVKDD
Sbjct: 67  NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDD 126

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DVFGAQIIGTA IP   IA+GE IS W+ ++  SG PPK   +I +++KFTP D+   YR
Sbjct: 127 DVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            GIAGDPE +GVR  YFP+RKGS VRLYQDAHV +G LP I LD GK+Y+ G CWEDIC+
Sbjct: 187 CGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICY 246

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AISEAHH+IYIVGWS+FHKIKL+RE    +PR  D+TLGELLKYKS+EGVRVLLLVWDDK
Sbjct: 247 AISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDK 304

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQK 369
           TSHDK G+KTPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ+VGT+FTHHQK
Sbjct: 305 TSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQVVGTLFTHHQK 364

Query: 370 CVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAP 429
           CVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+  DLDTVFKDDFHNPT+P GTKAP
Sbjct: 365 CVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAP 424

Query: 430 REPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWI 489
           R+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD LI+IGRISWI
Sbjct: 425 RQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDALIRIGRISWI 484

Query: 490 LSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQS 549
           LSP      +GT+I+P DD  V VSKEDDPENWHVQIFRSIDSGSVKGFPK  ++ + Q 
Sbjct: 485 LSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQH 544

Query: 550 LICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELAL 609
           L CAK +V+DKSIQTAYIQ IRSAQHFIYIENQYFLGSSYAWPSY++AGADNLIPMELAL
Sbjct: 545 LECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELAL 604

Query: 610 KIASKIRANERFAV 623
           KI SKIRA ERFAV
Sbjct: 605 KIVSKIRAKERFAV 618

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	628
TAIR|locus:2125314	868	PLDDELTA "phospholipase D delt	0.974	0.705	0.707	1e-242
TAIR|locus:2064607	1083	PLDBETA1 "phospholipase D beta	0.681	0.395	0.525	3.6e-166
TAIR|locus:2137045	858	PLDGAMMA1 "phospholipase D gam	0.633	0.463	0.513	1.1e-154
TAIR|locus:2126001	927	PLDBETA2 "phospholipase D beta	0.641	0.434	0.506	6.1e-154
TAIR|locus:2137035	866	PLDGAMMA3 "phospholipase D gam	0.640	0.464	0.496	3.3e-153
TAIR|locus:2137025	856	PLDGAMMA2 "phospholipase D gam	0.718	0.526	0.456	4.2e-145
UNIPROTKB|P86387	808	PLD1 "Phospholipase D alpha 1"	0.592	0.460	0.490	8.1e-125
TAIR|locus:2093227	810	PLDALPHA1 "phospholipase D alp	0.592	0.459	0.489	4.5e-122
TAIR|locus:2035211	810	PLDALPHA2 "phospholipase D alp	0.592	0.459	0.477	1.1e-120
TAIR|locus:2145452	820	PLDALPHA3 "phospholipase D alp	0.585	0.448	0.465	2e-115

TAIR|locus:2125314 PLDDELTA "phospholipase D delta" [Arabidopsis thaliana (taxid:3702)]

 Score = 2339 (828.4 bits), Expect = 1.0e-242, P = 1.0e-242
 Identities = 442/625 (70%), Positives = 498/625 (79%)

Query:    10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHXX 69
             E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct:     7 EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDK 66

Query:    70 XXXXXXXXXXXDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
                        DPYVTVVVPQAT+ARTRVLKNSQEP+W+E FNI +AHP + LE QVKDD
Sbjct:    67 NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDD 126

Query:   130 DVFGAQIIGTAAIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYR 189
             DVFGAQIIGTA IP   IA+GE IS W+                 +++KFTP D+   YR
Sbjct:   127 DVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186

Query:   190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
              GIAGDPE +GVR  YFP+RKGS VRLYQDAHV +G LP I LD GK+Y+ G CWEDIC+
Sbjct:   187 CGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICY 246

Query:   250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
             AISEAHH+IYIVGWS+FHKIKL+RE T+ +PR  D+TLGELLKYKS+EGVRVLLLVWDDK
Sbjct:   247 AISEAHHMIYIVGWSIFHKIKLVRE-TK-VPRDKDMTLGELLKYKSQEGVRVLLLVWDDK 304

Query:   310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ----------- 358
             TSHDK G+KTPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ           
Sbjct:   305 TSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPSSSIYIMT 364

Query:   359 IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFH 418
             +VGT+FTHHQKCVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+  DLDTVFKDDFH
Sbjct:   365 VVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFH 424

Query:   419 NPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478
             NPT+P GTKAPR+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD
Sbjct:   425 NPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDD 484

Query:   479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGF 538
              LI+IGRISWILSP      +GT+I+P DD  V VSKEDDPENWHVQIFRSIDSGSVKGF
Sbjct:   485 ALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGF 544

Query:   539 PKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAG 598
             PK  ++ + Q L CAK +V+DKSIQTAYIQ IRSAQHFIYIENQYFLGSSYAWPSY++AG
Sbjct:   545 PKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAG 604

Query:   599 ADNLIPMELALKIASKIRANERFAV 623
             ADNLIPMELALKI SKIRA ERFAV
Sbjct:   605 ADNLIPMELALKIVSKIRAKERFAV 629

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS;IMP;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0046473 "phosphatidic acid metabolic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=IMP

GO:0009409 "response to cold" evidence=IEP;IMP

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0090333 "regulation of stomatal closure" evidence=IMP

TAIR|locus:2064607 PLDBETA1 "phospholipase D beta 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1158 (412.7 bits), Expect = 3.6e-166, Sum P(3) = 3.6e-166
 Identities = 229/436 (52%), Positives = 283/436 (64%)

Query:    56 HETFQDDDGVRHXXXXXXXXXXXXXDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPL 115
             H+T  D  G                DPYV+V V  A + RT V+ NS+ PVW +HF +P+
Sbjct:   292 HKTLGDMFGRLPGKIEGQLTSKITSDPYVSVSVAGAVIGRTYVMSNSENPVWMQHFYVPV 351

Query:   116 AHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQL 175
             AH  + +   VKD DV G+Q+IG   IP   I +G  I   Y                 L
Sbjct:   352 AHHAAEVHFVVKDSDVVGSQLIGLVTIPVEQIYSGAKIEGTYPILNSNGKPCKPGANLSL 411

Query:   176 ELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGG 235
              +++TP DK  +Y  G+   P+++GV   YFPLRKG  VRLYQDAHV EG+LP I LD G
Sbjct:   412 SIQYTPMDKLSVYHHGVGAGPDYQGVPGTYFPLRKGGTVRLYQDAHVPEGMLPGIRLDNG 471

Query:   236 KLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS 295
               Y+ G CW D+  AI +A  LIYI GWSV+HK+KLIR++  P     + TLGELL+ KS
Sbjct:   472 MSYEHGKCWHDMFDAIRQARRLIYITGWSVWHKVKLIRDKLGP---ASECTLGELLRSKS 528

Query:   296 EEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYF 355
             +EGVRVLLL+WDD TS   LG KT GVMATHDEET++FFKHSSV  +L PR A  + S+ 
Sbjct:   529 QEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRNAGKRHSWV 588

Query:   356 KQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKD 415
             KQ+ VGTI+THHQK V+VD  A GN RKI AF+GG+DLCDGRYDTP+H LFR L T+ KD
Sbjct:   589 KQREVGTIYTHHQKNVIVDADAGGNRRKIIAFVGGLDLCDGRYDTPQHPLFRTLQTIHKD 648

Query:   416 DFHNPTYPIGTKA-PREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSH 474
             DFHNPT+       PREPWHDLH ++DGPAAYDVL NFE+RW KA K + +  KFK  S+
Sbjct:   649 DFHNPTFTGNLSGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKAAKPSGIK-KFK-TSY 706

Query:   475 WRDDYLIKIGRISWIL 490
               DD L++I RI  IL
Sbjct:   707 --DDALLRIDRIPDIL 720

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA

TAIR|locus:2137045 PLDGAMMA1 "phospholipase D gamma 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1084 (386.6 bits), Expect = 1.1e-154, Sum P(3) = 1.1e-154
 Identities = 209/407 (51%), Positives = 265/407 (65%)

Query:    81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTA 140
             DPYVTV +  A + RT V+ NS+ PVW +HF++P+AH  + +   VKD D+ G+QI+G  
Sbjct:    87 DPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFVVKDSDIIGSQIMGAV 146

Query:   141 AIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKG 200
              IP   + +G  I   +                 L +++TP ++  LY+ G+    E  G
Sbjct:   147 GIPTEQLCSGNRIEGLFPILNSSGKPCKQGAVLGLSIQYTPMERMRLYQMGVGSGNECVG 206

Query:   201 VRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYI 260
             V   YFPLRKG  V LYQDAHV +G LP + LDGG  Y+ G CWED+  AI +A  LIYI
Sbjct:   207 VPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWEDMADAIRQARRLIYI 266

Query:   261 VGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320
              GWSVFH ++L+R    P   G   TLGELLK KS+EGVRVL+LVWDD TS   LG KT 
Sbjct:   267 TGWSVFHPVRLVRRTNDPT-EG---TLGELLKVKSQEGVRVLVLVWDDPTSRSLLGFKTQ 322

Query:   321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGN 380
             GVM T DEET++FFKHSSV  +L PR      S+ K+  VGTI+THHQK V+VD +A+ N
Sbjct:   323 GVMNTSDEETRRFFKHSSVQVLLCPRSGGKGHSFIKKSEVGTIYTHHQKTVIVDAEAAQN 382

Query:   381 NRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTY-PIGTKAPREPWHDLHCR 439
              RKI AF+GG+DLC+GR+DTP+H LFR L T+ KDDFHNP +       PREPWHDLH +
Sbjct:   383 RRKIVAFVGGLDLCNGRFDTPKHPLFRTLKTLHKDDFHNPNFVTTADDGPREPWHDLHSK 442

Query:   440 LDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRI 486
             +DGPAAYDVL NFE+RW KA+K   +  K K  S   DD L++I RI
Sbjct:   443 IDGPAAYDVLANFEERWMKASKPRGIG-KLKSSS---DDSLLRIDRI 485

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IGI

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006643 "membrane lipid metabolic process" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA

TAIR|locus:2126001 PLDBETA2 "phospholipase D beta 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1073 (382.8 bits), Expect = 6.1e-154, Sum P(3) = 6.1e-154
 Identities = 208/411 (50%), Positives = 265/411 (64%)

Query:    81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTA 140
             DPYV++ V  A + RT V+ NS+ PVW +HF +P+AH  + +   VKD D  G+Q+IG  
Sbjct:   161 DPYVSISVAGAVIGRTYVISNSENPVWQQHFYVPVAHHAAEVHFVVKDSDAVGSQLIGIV 220

Query:   141 AIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKG 200
              IP   I +G  I   Y                 L +++T  +K  +Y  G+   P ++G
Sbjct:   221 TIPVEQIYSGARIEGTYSIRDSNGKPCKPGATLSLSIQYTSMNKLSVYHSGVGAGPYYQG 280

Query:   201 VRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYI 260
             V   YFPLR+G  V LYQDAHV EG+LP I L  G  Y+ G CW D+ HAI +A  LIYI
Sbjct:   281 VPGTYFPLREGGSVTLYQDAHVPEGMLPGIKLGNGMCYEHGKCWHDMFHAICQARRLIYI 340

Query:   261 VGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320
              GWSV+H ++L+R++  P     +  LGELL+ KS+EGVRVLLLVWDD TS + LG  T 
Sbjct:   341 TGWSVWHNVRLVRDKEDP---SSECRLGELLRSKSQEGVRVLLLVWDDPTSQNILGYMTD 397

Query:   321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGN 380
             GVM THDEET++FFK SSV  +L PR A  + S+ KQ+ VGTI+THHQK ++VD  A GN
Sbjct:   398 GVMGTHDEETRRFFKDSSVQVLLCPRNAGKRHSWVKQREVGTIYTHHQKNLIVDADAGGN 457

Query:   381 NRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKA-PREPWHDLHCR 439
              RKI AF+GG+DLCDGRYDTP+H LFR L T    D+HNPT+       PREPWHDLH +
Sbjct:   458 RRKIVAFVGGLDLCDGRYDTPQHPLFRTLQTDHNGDYHNPTFTGNVSGCPREPWHDLHSK 517

Query:   440 LDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWIL 490
             +DGPAAYDVL NFE+RW KA K   +  K K  S+  DD L++I RI  IL
Sbjct:   518 IDGPAAYDVLTNFEERWLKAAKPHRIN-KLK-TSY--DDALLRIDRIPDIL 564

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

TAIR|locus:2137035 PLDGAMMA3 "phospholipase D gamma 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1065 (380.0 bits), Expect = 3.3e-153, Sum P(3) = 3.3e-153
 Identities = 204/411 (49%), Positives = 265/411 (64%)

Query:    81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTA 140
             DPYVTV +  A + RT V+ NS+ PVW +HF++P+AH  + +   VKD D+ G+QIIG  
Sbjct:    94 DPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAKVHFVVKDSDIIGSQIIGAV 153

Query:   141 AIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKG 200
              IP   + +G  I   +                 L +++ P ++  LY++G+    E  G
Sbjct:   154 EIPTEQLCSGNRIEGLFPILNSRGKPCKQGAVLSLSIQYIPMERMRLYQKGVGFGVECVG 213

Query:   201 VRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYI 260
             V   YFPLRKG  V LYQDAHV +G LP + LDGG  Y+ G CWED+  AI  A  LIYI
Sbjct:   214 VPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWEDMADAIRRARRLIYI 273

Query:   261 VGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320
              GWSVFH ++L+R    P  +G   TLGELLK KS+EGVRVL+LVWDD TS   LG  T 
Sbjct:   274 TGWSVFHPVRLVRRNNDPT-QG---TLGELLKVKSQEGVRVLVLVWDDPTSRSLLGFSTK 329

Query:   321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGN 380
             G+M T DEET++FFKHSSV  +L PRY     S+ K+  V TI+THHQK ++VD +A+ N
Sbjct:   330 GLMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYTHHQKTMIVDAEAAQN 389

Query:   381 NRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTY-PIGTKAPREPWHDLHCR 439
              RKI AF+GG+DLC+GR+DTP+H LFR L T+ KDDFHNP +       PREPWHDLH +
Sbjct:   390 RRKIVAFVGGLDLCNGRFDTPKHPLFRTLKTIHKDDFHNPNFVTTADDGPREPWHDLHSK 449

Query:   440 LDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWIL 490
             +DGPAAYDVL NFE+RW KA+K   +     R+    DD L+++ RI  I+
Sbjct:   450 IDGPAAYDVLANFEERWMKASKPRGIG----RLRTSSDDSLLRLDRIPDIM 496

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

TAIR|locus:2137025 PLDGAMMA2 "phospholipase D gamma 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1042 (371.9 bits), Expect = 4.2e-145, Sum P(2) = 4.2e-145
 Identities = 218/478 (45%), Positives = 289/478 (60%)

Query:    15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHXXXXXXX 74
             LHG+LD+ +  A+ LPNM      L    +  ++ +         +  DG +        
Sbjct:    34 LHGNLDIWVKEAKHLPNMICYRNKLVGGISFSELGRR-------IRKVDGEK-------- 78

Query:    75 XXXXXXDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA 134
                   DPYVTV +  A + RT V+ NS+ PVW +HF++P+AH  + +   VKD+D  G+
Sbjct:    79 SSKFTSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFVVKDNDPIGS 138

Query:   135 QIIGTAAIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAG 194
             +IIG   IP   + +G  I   +                 L +++TP ++  LY++G+  
Sbjct:   139 KIIGVVGIPTKQLCSGNRIEGLFPILNSSGKPCRKGAMLSLSIQYTPMERMRLYQKGVGS 198

Query:   195 DPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEA 254
               E  GV   YFPLRKG  V LYQDAHV +G LP + LDGG  Y+ G CWED+  AI  A
Sbjct:   199 GVECVGVPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWEDMADAIRRA 258

Query:   255 HHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDK 314
               LIYI GWSVFH ++L+R    P   G   TLGELLK KS+EGVRVL+LVWDD TS   
Sbjct:   259 RRLIYITGWSVFHPVRLVRRNNDPT-EG---TLGELLKVKSQEGVRVLVLVWDDPTSMSF 314

Query:   315 LGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVD 374
              G  T G+M T DEET++FFKHSSV  +L PRY     S+ K+  V TI+THHQK ++VD
Sbjct:   315 PGFSTKGLMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYTHHQKTMIVD 374

Query:   375 TQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTK--APREP 432
              +A+ N RKI AF+GG+DLC+GR+DTP+H LF  L T+ KDDFHNP + + T+   PREP
Sbjct:   375 AEAAQNRRKIVAFVGGLDLCNGRFDTPKHSLFGTLKTLHKDDFHNPNF-VTTEDVGPREP 433

Query:   433 WHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWIL 490
             WHDLH ++DGPAAYDVL NFE+RW  A+K   +  K  R S   DD L++I RI  I+
Sbjct:   434 WHDLHSKIDGPAAYDVLANFEERWM-ASKPRGIG-K-GRTSF--DDSLLRINRIPDIM 486

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=TAS

GO:0016020 "membrane" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0006643 "membrane lipid metabolic process" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

UNIPROTKB|P86387 PLD1 "Phospholipase D alpha 1" [Carica papaya (taxid:3649)]

 Score = 949 (339.1 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
 Identities = 188/383 (49%), Positives = 247/383 (64%)

Query:    83 YVTVVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141
             Y T+ + +A V RTR++K+    P W E F+I  AH  SN+   VKDD+  GA +IG A 
Sbjct:    50 YATIDLERARVGRTRIIKDEPNNPKWYESFHIYCAHMASNVVFTVKDDNPIGATLIGRAY 109

Query:   142 IPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKGV 201
             +P   +  G+ + RW +                ++L+F    K+  +  GI G   + GV
Sbjct:   110 VPVEELIRGDQVDRWVEILDEDKNPIEGDSKIHVKLQFFDVKKDSNWNMGIKG-ARYLGV 168

Query:   202 RNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIV 261
                ++  R+G  V LYQDAHV +G +P+IPL GGK Y+P  CWED+  AI+ A HLIYI 
Sbjct:   169 PYTFYSQRRGCRVSLYQDAHVPDGFIPKIPLAGGKYYEPHRCWEDVFDAITNARHLIYIT 228

Query:   262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
             GWSV+ +I LIR+  RP P GGD+TLGELLK K+ EGV+VL+LVWDD+TS   L  K  G
Sbjct:   229 GWSVYTEITLIRDSRRPKP-GGDVTLGELLKQKASEGVKVLMLVWDDRTSVGLL--KKDG 285

Query:   322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA-SGN 380
             +MATHDEET  +F+++ V+CVL PR      S+ +   + T+FTHHQK V+VD +  SG 
Sbjct:   286 LMATHDEETANYFQNTDVHCVLCPRNPDDGGSFVQGLQISTMFTHHQKIVVVDGEMPSGE 345

Query:   381 N--RKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIG--TKA-PREPWHD 435
             +  R+I +F+GGIDLCDGRYDTP H LFR LDT   DDFH P +     TK  PREPWHD
Sbjct:   346 SQMRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFAGSSITKGGPREPWHD 405

Query:   436 LHCRLDGPAAYDVLINFEQRWRK 458
             +H RL+GP A+DVL NFEQRWR+
Sbjct:   406 IHSRLEGPVAWDVLFNFEQRWRQ 428

GO:0034638 "phosphatidylcholine catabolic process" evidence=IDA

TAIR|locus:2093227 PLDALPHA1 "phospholipase D alpha 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 931 (332.8 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
 Identities = 188/384 (48%), Positives = 246/384 (64%)

Query:    83 YVTVVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141
             Y T+ + +A V RTR +KN  + P W E F+I  AH  S++   VKDD+  GA +IG A 
Sbjct:    51 YATIDLQKARVGRTRKIKNEPKNPKWYESFHIYCAHLASDIIFTVKDDNPIGATLIGRAY 110

Query:   142 IPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKGV 201
             IP   +  GE + +W +                ++L++   +++  +  GI    +  GV
Sbjct:   111 IPVDQVINGEEVDQWVEILDNDRNPIQGGSKIHVKLQYFHVEEDRNWNMGIKS-AKFPGV 169

Query:   202 RNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIV 261
                +F  R+G  V LYQDAH+ +  +P IPL GGK Y+P  CWEDI  AIS A HLIYI 
Sbjct:   170 PYTFFSQRQGCKVSLYQDAHIPDNFVPRIPLAGGKNYEPQRCWEDIFDAISNAKHLIYIT 229

Query:   262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
             GWSV+ +I L+R+  RP P GGD+T+GELLK K+ EGVRVLLLVWDD+TS D L  K  G
Sbjct:   230 GWSVYAEIALVRDSRRPKP-GGDVTIGELLKKKASEGVRVLLLVWDDRTSVDVL--KKDG 286

Query:   322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ--ASG 379
             +MATHDEET+ FF+ S V+C+L PR      S  +   + T+FTHHQK V+VD++  + G
Sbjct:   287 LMATHDEETENFFRGSDVHCILCPRNPDDGGSIVQSLQISTMFTHHQKIVVVDSEMPSRG 346

Query:   380 NN--RKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIG--TKA-PREPWH 434
              +  R+I +F+GGIDLCDGRYDTP H LFR LDTV  DDFH P +     TK  PREPWH
Sbjct:   347 GSEMRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTVHHDDFHQPNFTGAAITKGGPREPWH 406

Query:   435 DLHCRLDGPAAYDVLINFEQRWRK 458
             D+H RL+GP A+DV+ NFEQRW K
Sbjct:   407 DIHSRLEGPIAWDVMYNFEQRWSK 430

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS;IDA;IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA

TAIR|locus:2035211 PLDALPHA2 "phospholipase D alpha 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 915 (327.2 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
 Identities = 183/383 (47%), Positives = 242/383 (63%)

Query:    83 YVTVVVPQATVARTR-VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141
             Y T+ + +A V RTR + K  + P W E F+I   H   ++   VKD +  GA +IG   
Sbjct:    51 YATIDLEKARVGRTRKITKEPKNPKWFESFHIYCGHMAKHVIFTVKDANPIGATLIGRGY 110

Query:   142 IPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKGV 201
             IP   I  GE + RW D                ++L++   +K+  + +GI    +  GV
Sbjct:   111 IPVEDILHGEEVDRWVDILDNEKNPIAGGSKIHVKLQYFGVEKDKNWNRGIKS-AKFPGV 169

Query:   202 RNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIV 261
                +F  R+G  V LYQDAH+    +P+IPL GGK Y+P  CWEDI  AI+ A HLIYI 
Sbjct:   170 PYTFFSQRRGCKVSLYQDAHIPGNFVPKIPLAGGKNYEPHRCWEDIFDAITNAKHLIYIT 229

Query:   262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
             GWSV+ +I L+R+  RP  +GGD+T+GELLK K+ EGV+V+LLVWDD+TS D L  K  G
Sbjct:   230 GWSVYTEISLVRDSRRP-KQGGDVTVGELLKKKASEGVKVILLVWDDRTSVDLL--KKDG 286

Query:   322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA-SGN 380
             +MATHDEET+ FF+ + VNC+L PR      S  +   + T+FTHHQK V+VD++  SG 
Sbjct:   287 LMATHDEETENFFRGTDVNCILCPRNPDDGGSIVQNLQISTMFTHHQKIVVVDSEMPSGG 346

Query:   381 NR--KITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIG--TKA-PREPWHD 435
             +R  +I +F+GG+DLCDGRYDTP H LFR LDT   DDFH P +     TK  PREPWHD
Sbjct:   347 SRSRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGAAITKGGPREPWHD 406

Query:   436 LHCRLDGPAAYDVLINFEQRWRK 458
             +HCRL+GP A+DVL NFEQRW +
Sbjct:   407 IHCRLEGPIAWDVLYNFEQRWSR 429

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2145452 PLDALPHA3 "phospholipase D alpha 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 2.0e-115, Sum P(2) = 2.0e-115
 Identities = 178/382 (46%), Positives = 238/382 (62%)

Query:    83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAI 142
             Y T+ + ++ VART + ++   P W + F++  AH +S +   VK+D+   A +IG A +
Sbjct:    62 YATIDLDRSRVARTMMRRH---PKWLQSFHVYTAHSISKIIFTVKEDEPVSASLIGRAYL 118

Query:   143 PAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKGVR 202
             P   + TG+ I RW D                + +KFT   ++  + +GI   P   GV 
Sbjct:   119 PVTEVITGQPIDRWLDILDENRRPIQGGSKLHVRVKFTHVTQDVNWNKGIIL-PSFNGVP 177

Query:   203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK-LYKPGTCWEDICHAISEAHHLIYIV 261
             NAYF  R+G  V LYQDAHV     P++ L GG+ +YK   CWE+I  AI EA HLIYI 
Sbjct:   178 NAYFNQREGCKVTLYQDAHVLNEY-PDVTLTGGQVIYKHHRCWEEIFDAIWEAKHLIYIA 236

Query:   262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
             GWSV   + L+R+  R  P GGDL LGELLK K+EE V VL+LVWDD+TSH+    K  G
Sbjct:   237 GWSVNTDVTLVRDPKRTRP-GGDLKLGELLKKKAEENVTVLMLVWDDRTSHEVF--KRDG 293

Query:   322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGN- 380
             +M THD+ET  +FK++ V CVL PR   +  S  +   V T+FTHHQK ++VD++  G+ 
Sbjct:   294 LMMTHDQETYDYFKNTKVRCVLCPRNPDNGDSIVQGFEVATMFTHHQKTIVVDSEVDGSL 353

Query:   381 -NRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYP---IGTKAPREPWHDL 436
               R+I +F+GGIDLCDGRYDT EH LF  L++V  +DFH P +    I    PREPWHD+
Sbjct:   354 TKRRIVSFLGGIDLCDGRYDTVEHPLFGTLNSVHANDFHQPNFDGASIKKGGPREPWHDI 413

Query:   437 HCRLDGPAAYDVLINFEQRWRK 458
             HC+LDGPAA+DVL NFEQRW K
Sbjct:   414 HCKLDGPAAWDVLYNFEQRWMK 435

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0046466 "membrane lipid catabolic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5Y0	PLDD1_ARATH	3, ., 1, ., 4, ., 4	0.7232	0.9745	0.7050	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.4.4	0.946
3rd Layer	3.1.4	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.7__496__AT4G35790.1 annotation not avaliable (869 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	628
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	0.0
PLN02270	808	PLN02270, PLN02270, phospholipase D alpha	1e-175
PLN02352	758	PLN02352, PLN02352, phospholipase D epsilon	1e-119
cd09198	180	cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat	1e-110
cd09139	176	cd09139, PLDc_pPLD_like_1, Catalytic domain, repea	2e-84
cd09197	178	cd09197, PLDc_pPLDalpha_1, Catalytic domain, repea	1e-71
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	7e-68
cd09200	211	cd09200, PLDc_pPLDbeta_2, Catalytic domain, repeat	2e-38
cd09142	208	cd09142, PLDc_pPLD_like_2, Catalytic domain, repea	4e-33
cd09104	147	cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, re	3e-25
cd09199	211	cd09199, PLDc_pPLDalpha_2, Catalytic domain, repea	7e-24
PLN02866	1068	PLN02866, PLN02866, phospholipase D	1e-20
cd09138	146	cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domai	4e-20
cd00030	102	cd00030, C2, C2 domain	1e-16
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-14
cd09141	183	cd09141, PLDc_vPLD1_2_yPLD_like_2, Catalytic domai	7e-14
cd09140	146	cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain	2e-13
pfam00168	85	pfam00168, C2, C2 domain	1e-12
cd09842	151	cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1,	2e-12
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	2e-11
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	8e-10
cd09105	146	cd09105, PLDc_vPLD1_2_like_2, Catalytic domain, re	3e-09
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	3e-09
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	1e-08
cd09843	145	cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1,	2e-08
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-08
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	2e-07
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-07
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	7e-07
cd09143	142	cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain	7e-06
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	7e-06
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	1e-05
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	1e-05
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-05
cd09844	182	cd09844, PLDc_vPLD1_2, Catalytic domain, repeat 2,	2e-05
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	5e-05
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	1e-04
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-04
COG1502	438	COG1502, Cls, Phosphatidylserine/phosphatidylglyce	1e-04
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-04
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	1e-04
cd04013	146	cd04013, C2_SynGAP_like, C2 domain present in Ras	1e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	1e-04
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	2e-04
cd09110	154	cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, o	2e-04
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	3e-04
PLN02866	1068	PLN02866, PLN02866, phospholipase D	4e-04
cd09845	182	cd09845, PLDc_vPLD2_2, Catalytic domain, repeat 2,	4e-04
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	7e-04
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	7e-04
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	8e-04
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	9e-04
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	0.002
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	0.002
cd08400	126	cd08400, C2_Ras_p21A1, C2 domain present in RAS p2	0.004
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	0.004

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score =  953 bits (2464), Expect = 0.0
 Identities = 452/625 (72%), Positives = 511/625 (81%), Gaps = 13/625 (2%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct: 7   EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDK 66

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
            I    K+ITSDPYVTVVVPQAT+ARTRVLKNSQEP+W+E FNI +AHP + LE QVKDD
Sbjct: 67  NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDD 126

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DVFGAQIIGTA IP   IA+GE IS W+ ++  SG PPK   +I +++KFTP D+   YR
Sbjct: 127 DVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            GIAGDPE +GVR  YFP+RKGS VRLYQDAHV +G LP I LD GK+Y+ G CWEDIC+
Sbjct: 187 CGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICY 246

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AISEAHH+IYIVGWS+FHKIKL+RE    +PR  D+TLGELLKYKS+EGVRVLLLVWDDK
Sbjct: 247 AISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDK 304

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ----------- 358
           TSHDK G+KTPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ           
Sbjct: 305 TSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMT 364

Query: 359 IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFH 418
           +VGT+FTHHQKCVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+  DLDTVFKDDFH
Sbjct: 365 VVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFH 424

Query: 419 NPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478
           NPT+P GTKAPR+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD
Sbjct: 425 NPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDD 484

Query: 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGF 538
            LI+IGRISWILSP      +GT+I+P DD  V VSKEDDPENWHVQIFRSIDSGSVKGF
Sbjct: 485 ALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGF 544

Query: 539 PKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAG 598
           PK  ++ + Q L CAK +V+DKSIQTAYIQ IRSAQHFIYIENQYFLGSSYAWPSY++AG
Sbjct: 545 PKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAG 604

Query: 599 ADNLIPMELALKIASKIRANERFAV 623
           ADNLIPMELALKI SKIRA ERFAV
Sbjct: 605 ADNLIPMELALKIVSKIRAKERFAV 629

Length = 868

>gnl|CDD|165912 PLN02270, PLN02270, phospholipase D alpha

 Score =  518 bits (1335), Expect = e-175
 Identities = 260/556 (46%), Positives = 342/556 (61%), Gaps = 47/556 (8%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQE-PVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQII 137
            S  Y T+ + +A V RTR ++N  + P W E F+I  AH  SN+   VKDD+  GA +I
Sbjct: 46  ESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLI 105

Query: 138 GTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPE 197
           G A IP   I  GE + RW +I+    +P   G+ I ++L++    K+  + +GI    +
Sbjct: 106 GRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGIRS-AK 164

Query: 198 HKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHL 257
             GV   +F  R+G  V LYQDAH+ +  +P+IPL GGK Y+P  CWED+  AI+ A HL
Sbjct: 165 FPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHL 224

Query: 258 IYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV 317
           IYI GWSV+ +I L+R+  RP P GGD+T+GELLK K+ EGVRVLLLVWDD+TS D L  
Sbjct: 225 IYITGWSVYTEISLVRDSRRPKP-GGDVTIGELLKKKASEGVRVLLLVWDDRTSVDLL-- 281

Query: 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ- 376
           K  G+MATHDEET+ FF+ + V+C+L PR      S  +   + T+FTHHQK V+VD++ 
Sbjct: 282 KKDGLMATHDEETENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEM 341

Query: 377 ASGNN--RKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTY---PIGTKAPRE 431
            +G +  R+I +F+GGIDLCDGRYDTP H LFR LDT   DDFH P +    I    PRE
Sbjct: 342 PNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGPRE 401

Query: 432 PWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILS 491
           PWHD+H RL+GP A+DVL NFEQRW K                   D L++         
Sbjct: 402 PWHDIHSRLEGPIAWDVLFNFEQRWSKQGG---------------KDILVQ--------- 437

Query: 492 PELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLI 551
               L+     I+P       V   DD E W+VQ+FRSID G+  GFP++ E   +  L+
Sbjct: 438 ----LRELEDVIIPPSP----VMFPDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLV 489

Query: 552 CAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPS----YKNAGADNLIPMEL 607
             KD +ID+SIQ AYI AIR A+ FIYIENQYFLGSS+AW +     ++  A +LIP EL
Sbjct: 490 SGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKEL 549

Query: 608 ALKIASKIRANERFAV 623
           +LKI SKI A E+F V
Sbjct: 550 SLKIVSKIEAGEKFTV 565

Length = 808

>gnl|CDD|215202 PLN02352, PLN02352, phospholipase D epsilon

 Score =  372 bits (956), Expect = e-119
 Identities = 218/550 (39%), Positives = 291/550 (52%), Gaps = 82/550 (14%)

Query: 83  YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAA 141
           YVT+ +    VA+T    +  + VWN+ F I  AHPL S + I +K        I+G   
Sbjct: 39  YVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK----CSILGRFH 91

Query: 142 IPAHTIAT-GELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKG 200
           I AH I T    I+ ++ +I  +G P  P   ++  L F P +  P + + I  +   +G
Sbjct: 92  IQAHQIVTEASFINGFFPLIMENGKP-NPELKLRFMLWFRPAELEPTWCK-ILENGSFQG 149

Query: 201 VRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYI 260
           +RNA FP R   HV LYQDAH      P + L G     P   WED+  AI  A HLIYI
Sbjct: 150 LRNATFPQRSNCHVILYQDAHHCSTFQPPVDLCGS----PRKLWEDVYKAIEGAKHLIYI 205

Query: 261 VGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320
            GWS   K+ L+R+    +P    + LGELLK K+EEGV V +++WDD+TS     +K  
Sbjct: 206 AGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNK 263

Query: 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA--S 378
           GVM THDE+   +FKH+ V C L PR       + K     T+F HHQK + VDT+A  S
Sbjct: 264 GVMGTHDEDAFAYFKHTKVVCKLCPRL------HKK---FPTLFAHHQKTITVDTRANDS 314

Query: 379 GNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDT-VFKDDFHNPTYPIGTK----APREPW 433
            + R+I +F+GG+DLCDGRYDT EH LFR L+T     DF+  T   G K     PREPW
Sbjct: 315 ISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQ-TSIAGAKLQKGGPREPW 373

Query: 434 HDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPE 493
           HD H  + G AA+DVL NFEQRW K    +                L+    I  ++   
Sbjct: 374 HDAHACIVGEAAWDVLTNFEQRWTKQCNPS---------------VLVPTSSIRNLVHQP 418

Query: 494 LSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICA 553
            S ++N                     NW VQ++RSID  S    P+++           
Sbjct: 419 GSSESNN-------------------RNWKVQVYRSIDHVSASHMPRNLP---------- 449

Query: 554 KDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIAS 613
               +++SI  AY++AIR A+ FIYIENQYF+G  + W    + G  NLIP+E+ALKIAS
Sbjct: 450 ----VERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIAS 505

Query: 614 KIRANERFAV 623
           KIRA ERFAV
Sbjct: 506 KIRAKERFAV 515

Length = 758

>gnl|CDD|197294 cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat 1, of plant beta-type phospholipase D

 Score =  328 bits (841), Expect = e-110
 Identities = 134/180 (74%), Positives = 154/180 (85%)

Query: 234 GGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKY 293
           GGK+Y+ G CWED+C AI EA  LIYI GWSV+HK+KLIR++ RP+P GG+LTLGELLK 
Sbjct: 1   GGKVYEHGKCWEDMCDAIREARRLIYITGWSVYHKVKLIRDKLRPVPPGGELTLGELLKS 60

Query: 294 KSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLS 353
           KS+EGVRVLLLVWDDKTSH  LG KT GVMATHDEETK+FFKHSSV CVLAPRYA  K S
Sbjct: 61  KSQEGVRVLLLVWDDKTSHSILGYKTDGVMATHDEETKRFFKHSSVQCVLAPRYAGKKHS 120

Query: 354 YFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVF 413
           +FKQQ+VGT++THHQK V+VD  A GN RKITAFIGG+DLCDGRYDTP+H LFR L+T+ 
Sbjct: 121 WFKQQVVGTLYTHHQKNVIVDADAGGNRRKITAFIGGLDLCDGRYDTPQHPLFRTLETIH 180

Catalytic domain, repeat 1, of plant beta-type phospholipase D (PLDbeta, EC 3.1.4.4). Plant PLDbeta is a phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and requires nanomolar calcium and cytosolic factors for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Sequence analysis shows that plant PLDbeta is evolutionarily divergent from alpha-type plant PLD, and plant PLDbeta is more closely related to mammalian and yeast PLDs than to plant PLDalpha. Like other PLD enzymes, the monomer of plant PLDbeta consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDbeta may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 180

>gnl|CDD|197237 cd09139, PLDc_pPLD_like_1, Catalytic domain, repeat 1, of plant phospholipase D and similar proteins

 Score =  261 bits (670), Expect = 2e-84
 Identities = 104/179 (58%), Positives = 122/179 (68%), Gaps = 4/179 (2%)

Query: 234 GGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKY 293
            G++Y P   WED+  AI  A HLIYI GWSV  +I LIR+  R  P     TLGELLK 
Sbjct: 1   NGQVYNPRRLWEDMYDAICNAKHLIYIAGWSVNPEISLIRDSEREDPPKYSPTLGELLKR 60

Query: 294 KSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLS 353
           K+EEGV VLLL+WDDKT     G K  GVMATHDEET+ FF+++ VNC+L PR   +  +
Sbjct: 61  KAEEGVAVLLLLWDDKTV---NGFKNDGVMATHDEETRNFFRNTKVNCLLCPRNGDAGNT 117

Query: 354 YFKQQIVGTIFTHHQKCVLVDTQAS-GNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDT 411
           Y +Q  V T FTHHQK V+VD  A  G  R+I AF+GGIDLCDGRYD PEH LFR LDT
Sbjct: 118 YVEQIEVSTAFTHHQKTVIVDAPAPNGERREIVAFVGGIDLCDGRYDNPEHSLFRTLDT 176

Catalytic domain, repeat 1, of plant phospholipase D (PLD, EC 3.1.4.4) and similar proteins. Plant PLDs have broad substrate specificity and can hydrolyze the terminal phosphodiester bond of several common membrane phospholipids such as phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and phosphatidylserine (PS), with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Most plant PLDs possess a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require calcium for activity, which is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDs may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. This subfamily includes two types of plant PLDs, alpha-type and beta-type PLDs, which are derived from different gene products and distinctly regulated. The zeta-type PLD from Arabidopsis is not included in this subfamily. Length = 176

>gnl|CDD|197293 cd09197, PLDc_pPLDalpha_1, Catalytic domain, repeat 1, of plant alpha-type phospholipase D

 Score =  228 bits (582), Expect = 1e-71
 Identities = 103/181 (56%), Positives = 128/181 (70%), Gaps = 6/181 (3%)

Query: 234 GGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKY 293
           GG+ Y+P  CWED+  AI  A HLIYI GWSV+ +I L+R+  RP P GGDLTLGELLK 
Sbjct: 1   GGQKYEPTRCWEDVFDAIMNAKHLIYITGWSVYCEIVLVRDSRRPKP-GGDLTLGELLKK 59

Query: 294 KSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLS 353
           K+ EGVRVL+LVWDD+TS + L  K  G+MATHDEET+ FF+ S V+C L PR      S
Sbjct: 60  KASEGVRVLMLVWDDRTSVEFL--KKDGLMATHDEETEAFFQDSDVHCFLCPRNPDDGGS 117

Query: 354 YFKQQIVGTIFTHHQKCVLVDTQASGNN---RKITAFIGGIDLCDGRYDTPEHRLFRDLD 410
             +   + T+FTHHQK V+VD+   G++   R+I +F+GGIDLCDGRYD P H LFR LD
Sbjct: 118 KVQGLQISTMFTHHQKIVVVDSPMPGSDSGRRRIVSFVGGIDLCDGRYDNPFHSLFRTLD 177

Query: 411 T 411
            
Sbjct: 178 D 178

Catalytic domain, repeat 1, of plant alpha-type phospholipase D (PLDalpha, EC 3.1.4.4). Plant PLDalpha is a phosphatidylinositol 4,5-bisphosphate (PIP2)-independent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require millimolar calcium for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDalpha consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDalpha may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 178

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score =  217 bits (556), Expect = 7e-68
 Identities = 79/170 (46%), Positives = 99/170 (58%), Gaps = 12/170 (7%)

Query: 11  KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSK 70
             + LHG LD+ I  A  LPNMDM SE LRR F+    C  P             RH   
Sbjct: 1   AAVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLK-----RPSSHRHV-- 53

Query: 71  IIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD 130
                  ITSDPY TV +  A VARTRV++NS+ PVWNE F+I  AH  S++E  VKD+D
Sbjct: 54  -----GKITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDND 108

Query: 131 VFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180
           V GAQ+IG A IP   + +GE +  W  I+  +G PPKPGA I++ L+FT
Sbjct: 109 VVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|197296 cd09200, PLDc_pPLDbeta_2, Catalytic domain, repeat 2, of plant beta-type phospholipase D

 Score =  141 bits (356), Expect = 2e-38
 Identities = 57/70 (81%), Positives = 65/70 (92%)

Query: 554 KDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIAS 613
           K+V+ID SI TAY++AIRSAQHFIYIENQYF+GSSY WP+YK+AGADNLIPME+ALKIA 
Sbjct: 1   KNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWPAYKDAGADNLIPMEIALKIAE 60

Query: 614 KIRANERFAV 623
           KIRA ERFAV
Sbjct: 61  KIRAGERFAV 70

Catalytic domain, repeat 2, of plant beta-type phospholipase D (PLDbeta, EC 3.1.4.4). Plant PLDbeta is a phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and requires nanomolar calcium and cytosolic factors for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Sequence analysis shows that plant PLDbeta is evolutionarily divergent from alpha-type plant PLD, and plant PLDbeta is more closely related to mammalian and yeast PLDs than to plant PLDalpha. Like other PLD enzymes, the monomer of plant PLDbeta consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDbeta may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 211

>gnl|CDD|197240 cd09142, PLDc_pPLD_like_2, Catalytic domain, repeat 2, of plant phospholipase D and similar proteins

 Score =  125 bits (316), Expect = 4e-33
 Identities = 47/71 (66%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 554 KDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAW-PSYKNAGADNLIPMELALKIA 612
           K   ID+SIQ AY+ AIR A+ FIYIENQYFLGSS+ W    ++ G  NLIP ELALKIA
Sbjct: 1   KGRTIDRSIQDAYVHAIRRAKRFIYIENQYFLGSSFMWSNRDRDIGCANLIPAELALKIA 60

Query: 613 SKIRANERFAV 623
            KIRA ERFAV
Sbjct: 61  EKIRARERFAV 71

Catalytic domain, repeat 2, of plant phospholipase D (PLD, EC 3.1.4.4) and similar proteins. Plant PLDs have broad substrate specificity and can hydrolyze the terminal phosphodiester bond of several common membrane phospholipids such as phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and phosphatidylserine (PS), with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Most plant PLDs possess a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require calcium for activity, which is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDs may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. This subfamily includes two types of plant PLDs, alpha-type and beta-type PLDs, which are derived from different gene products and distinctly regulated. The zeta-type PLD from Arabidopsis is not included in this subfamily. Length = 208

>gnl|CDD|197203 cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins

 Score =  101 bits (254), Expect = 3e-25
 Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 30/167 (17%)

Query: 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYK-SEEGVRV 301
            ++D+  A+  A H +YI GW V   I L      PL  G D  LG+ L+   +  GV V
Sbjct: 10  YFDDLAEALDGARHSVYITGWQVSADIIL-----APLLAGPD-RLGDTLRTLAARRGVDV 63

Query: 302 LLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVG 361
            +L+WD                   +     F + ++   VL  R               
Sbjct: 64  RVLLWDSPLLV-----LLGPDDKDLNLGFPTFLRLTTALLVLDLRL-----------RRH 107

Query: 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRD 408
           T+F+HHQK V++D      + ++ AF+GGIDL  GRYD P+H L   
Sbjct: 108 TLFSHHQKLVVID------SAEV-AFVGGIDLAYGRYDDPDHALAAP 147

Catalytic domain, repeat 1, of phospholipase D (PLD, EC 3.1.4.4) found in yeast, plants, and vertebrates, and their bacterial homologs. PLDs are involved in signal transduction, vesicle formation, protein transport, and mitosis by participating in phospholipid metabolism. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Both prokaryotic and eukaryotic PLDs have two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. PLDs are active as bi-lobed monomers. Each monomer contains two domains, each of which carries one copy of the HKD motif. Two HKD motifs from two domains form a single active site. PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 147

>gnl|CDD|197295 cd09199, PLDc_pPLDalpha_2, Catalytic domain, repeat 2, of plant alpha-type phospholipase D

 Score = 99.7 bits (248), Expect = 7e-24
 Identities = 48/74 (64%), Positives = 55/74 (74%), Gaps = 4/74 (5%)

Query: 554 KDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSY----KNAGADNLIPMELAL 609
           KD +ID+SIQ AYI AIR A+ FIYIENQYFLGSSYAW       ++ GA +LIP EL+L
Sbjct: 1   KDNIIDRSIQDAYINAIRRAKDFIYIENQYFLGSSYAWSPDGIKPQDIGALHLIPKELSL 60

Query: 610 KIASKIRANERFAV 623
           KI SKI A ERF V
Sbjct: 61  KIVSKIEAGERFRV 74

Catalytic domain, repeat 2, of plant alpha-type phospholipase D (PLDalpha, EC 3.1.4.4). Plant PLDalpha is a phosphatidylinositol 4,5-bisphosphate (PIP2)-independent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require millimolar calcium for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDalpha consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDalpha may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 211

>gnl|CDD|215467 PLN02866, PLN02866, phospholipase D

 Score = 96.4 bits (240), Expect = 1e-20
 Identities = 74/229 (32%), Positives = 110/229 (48%), Gaps = 43/229 (18%)

Query: 245 EDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLL 304
           E I  AI  A   I+I GW +  ++ L     RP        L  LL+ K+++GV++ +L
Sbjct: 347 EAIASAIENAKSEIFITGWWLCPELYL----RRPFHDHESSRLDSLLEAKAKQGVQIYIL 402

Query: 305 VWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIF 364
           ++ +      L +K   V +    + +    H +V  +  P + SS + Y        ++
Sbjct: 403 LYKEVA----LALKINSVYS----KRRLLGIHENVKVLRYPDHFSSGV-Y--------LW 445

Query: 365 THHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFK-DDFHNP--T 421
           +HH+K V+VD Q          FIGG+DLC GRYDTPEHR+      ++   D++NP  +
Sbjct: 446 SHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRES 497

Query: 422 YPIG-----------TKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKA 459
            P              K PR PWHD+HC L GP   DV  +F QRW  A
Sbjct: 498 EPNSWEDTMKDELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYA 546

Length = 1068

>gnl|CDD|197236 cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins

 Score = 86.8 bits (216), Expect = 4e-20
 Identities = 42/173 (24%), Positives = 65/173 (37%), Gaps = 51/173 (29%)

Query: 245 EDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLL 304
             +  AI  A   I+I  W +  ++ L R    P        L  LLK K+EEGV++ +L
Sbjct: 12  WAVADAIENAKEEIFITDWWLSPELYLRR----PPAGNERWRLDRLLKRKAEEGVKIYIL 67

Query: 305 VWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYF--------- 355
           ++                      E +     +S       +Y    L            
Sbjct: 68  LYK---------------------EVELALTINS-------KYTKRTLENLHPNIKVLRH 99

Query: 356 -KQQIVGTIF-THHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLF 406
                 G +  +HH+K V++D           AF+GG+DLC GR+DT +H L 
Sbjct: 100 PDHLPQGPLLWSHHEKIVVIDQS--------IAFVGGLDLCYGRWDTHQHPLT 144

Catalytic domain, repeat 1, of vertebrate phospholipases D (PLD1 and PLD2), yeast phospholipase D (PLD SPO14/PLD1), and other similar eukaryotic proteins. These PLD enzymes play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. The vertebrate PLD1 and PLD2 are membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzymes that selectively hydrolyze phosphatidylcholine (PC). Protein cofactors and calcium may be required for their activation. Yeast SPO14/PLD1 is a calcium-independent PLD, which needs PIP2 for its activity. Instead of the regulatory calcium-dependent phospholipid-binding C2 domain in plants, most mammalian and yeast PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at the N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. The PX and PH domains are also present in zeta-type PLD from Arabidopsis, which is more closely related to vertebrate PLDs than to other plant PLD types. In addition, this subfamily also includes some related proteins which have either PX-like or PH domains in their N-termini. Like other members of the PLD superfamily, the monomer of mammalian and yeast PLDs consists of two catalytic domains, each containing one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from the two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 146

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 75.6 bits (186), Expect = 1e-16
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 71  IIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLS-NLEIQVKDD 129
           +  K     SDPYV V +      +T+V+KN+  PVWNE F  P+  P S  L ++V D 
Sbjct: 11  LPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDK 70

Query: 130 DVFGAQ-IIGTAAIPAHTIA-TGELISRWYDI 159
           D F     +G   IP   +  +G+    W  +
Sbjct: 71  DRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 71  IIRKSKIITSDPYVTVVV--PQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVK 127
           +  K K   SDPYV V +        +T+V+KN+  PVWNE F   +  P L+ LEI+V 
Sbjct: 12  LPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVY 71

Query: 128 DDDVFG-AQIIGTAAIPAHTIATGELISRW 156
           D D FG    IG   IP   +  G    + 
Sbjct: 72  DKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|197239 cd09141, PLDc_vPLD1_2_yPLD_like_2, Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins

 Score = 69.9 bits (172), Expect = 7e-14
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 558 IDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRA 617
            + SIQ AY+  I +A+HFIYIENQ+F+ SS            N I   L  +I    + 
Sbjct: 5   TEDSIQNAYLDLIENAEHFIYIENQFFI-SSTGGEDPVK----NRIGEALVDRIIRAHKE 59

Query: 618 NERFAV 623
            E+F V
Sbjct: 60  GEKFRV 65

Catalytic domain, repeat 2, of vertebrate phospholipases D (PLD1 and PLD2), yeast phospholipase D (PLD SPO14/PLD1), and other similar eukaryotic proteins. These PLD enzymes play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. The vertebrate PLD1 and PLD2 are membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzymes that selectively hydrolyze phosphatidylcholine (PC). Protein cofactors and calcium may be required for their activation. Yeast SPO14/PLD1 is a calcium-independent PLD, which needs PIP2 for its activity. Instead of the regulatory calcium-dependent phospholipid-binding C2 domain in plants, most mammalian and yeast PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at the N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. The PX and PH domains are also present in zeta-type PLD from Arabidopsis, which is more closely related to vertebrate PLDs than to other plant PLD types. In addition, this subfamily also includes some related proteins which have either PX-like or PH domains in their N-termini. Like other members of the PLD superfamily, the monomer of mammalian and yeast PLDs consists of two catalytic domains, each containing one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from the two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 183

>gnl|CDD|197238 cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain, repeat 1, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 43/170 (25%), Positives = 59/170 (34%), Gaps = 57/170 (33%)

Query: 249 HAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE--GVRVLLLVW 306
            A+  A   I IVGW    +I+L R        GG   LG+ L + +E    + + +L W
Sbjct: 16  EALLRARRSILIVGWDFDSRIRLRRGGD---DDGGPERLGDFLNWLAERRPDLDIRILKW 72

Query: 307 D---------DKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA---PRYASSKLSY 354
           D         +      L                 +  H  ++  L    P  AS     
Sbjct: 73  DFAMLYALERELLPLFLLR----------------WKTHPRIHFRLDGHHPLGAS----- 111

Query: 355 FKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHR 404
                      HHQK V++D           AF GGIDL   R+DT EH 
Sbjct: 112 -----------HHQKIVVIDDA--------LAFCGGIDLTVDRWDTREHL 142

Catalytic domain, repeat 1, of uncharacterized bacterial counterparts of vertebrate, yeast and plant phospholipase D (PLD, EC 3.1.4.4). PLDs hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. They also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Instead of the regulatory C2 (calcium-activated lipid binding) domain in plants and the adjacent Phox (PX) and the Pleckstrin homology (PH) N-terminal domains in most mammalian and yeast PLDs, many members in this subfamily contain a SNARE associated C-terminal domain, whose functional role is unclear. Like other PLD enzymes, members in this subfamily contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), that may play an important role in the catalysis. Length = 146

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 34/126 (26%), Positives = 46/126 (36%), Gaps = 46/126 (36%)

Query: 19  LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKII 78
           L + +I A+ LP  D+                                            
Sbjct: 1   LRVTVISAKNLPPKDLNG------------------------------------------ 18

Query: 79  TSDPYVTV-VVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGA- 134
            SDPYV V +  Q     +T+V+KN+  PVWNE F   +  P L+ L I+V D D FG  
Sbjct: 19  KSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLPELAELRIEVYDYDRFGKD 78

Query: 135 QIIGTA 140
             IG  
Sbjct: 79  DFIGEV 84

Length = 85

>gnl|CDD|197300 cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1, of vertebrate phospholipase D1

 Score = 64.7 bits (157), Expect = 2e-12
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 34/173 (19%)

Query: 236 KLYKPGTCW-EDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYK 294
           K Y    C+ ED+ +A+ EA   I+I  W +  +I L     RP+  G    L  +LK K
Sbjct: 2   KWYVNAKCYFEDVANAMEEAKEEIFITDWWLSPEIFL----KRPVVEGNRWRLDCILKRK 57

Query: 295 SEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFK--HSSVNCVLAPRYASSKL 352
           +++GVR+ ++++  K     LG+ +        E +K+     H ++  +  P + SS +
Sbjct: 58  AQQGVRIFVMLY--KEVELALGINS--------EYSKRTLMRLHPNIKVMRHPDHVSSSV 107

Query: 353 SYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL 405
                     ++ HH+K V++D           AF+GGIDL  GR+D  EHRL
Sbjct: 108 ---------YLWAHHEKIVVIDQS--------VAFVGGIDLAYGRWDDDEHRL 143

Catalytic domain, repeat 1, of vertebrate phospholipase D1 (PLD1). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD1 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 151

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 12/115 (10%)

Query: 70  KIIRKSKII-TSDPYVTVVVPQAT--VARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQ 125
             I K  ++ T D YV + +P A+    RT+ +KNS  PVWNE F   +   + N LE+ 
Sbjct: 10  TNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELT 69

Query: 126 VKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180
           V D+D      +GT       +  GE +   +           P    +LE++F 
Sbjct: 70  VMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTF--------SLNPQGKEELEVEFL 116

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 80  SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN---LEIQVKD-DDVFGAQ 135
            D    V        +TRVL+N   PVWNE F  PLA        LEI VKD + V   +
Sbjct: 15  GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNR 73

Query: 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181
           +IG+A +    + +  L+     ++  +G P   GA+I LE+ + P
Sbjct: 74  LIGSATVSLQDLVSEGLLEVTEPLLDSNGRP--TGATISLEVSYQP 117

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|197204 cd09105, PLDc_vPLD1_2_like_2, Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 18/70 (25%)

Query: 554 KDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIAS 613
                +  I  AY++AIR+A+ +IYIE+QY                      EL   +A 
Sbjct: 1   FAPSGEFEIADAYLKAIRNARRYIYIEDQYL------------------WSPELLDALAE 42

Query: 614 KIRANERFAV 623
            ++AN    V
Sbjct: 43  ALKANPGLRV 52

Catalytic domain, repeat 2, of phospholipase D (PLD, EC 3.1.4.4) found in yeast, plants, and vertebrates, and their bacterial homologs. PLDs are involved in signal transduction, vesicle formation, protein transport, and mitosis by participating in phospholipid metabolism. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Both prokaryotic and eukaryotic PLDs have two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. PLDs are active as bi-lobed monomers. Each monomer contains two domains, each of which carries one copy of the HKD motif. Two HKD motifs from two domains form a single active site. PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 146

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 79  TSDPYVTVVV-----PQATVARTRVLK-NSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDV 131
             DPYV V +       +   +T+V+K N   PVWNE F   +  P L+ L   V D+D 
Sbjct: 24  IVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDS 83

Query: 132 FGAQIIGTAAIPAHTIATG 150
                +G A +P  ++  G
Sbjct: 84  GDDDFLGQACLPLDSLRQG 102

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
           K+   SK    DPYV V V      +T V K +  P WNEHF + L  P S LE +V   
Sbjct: 12  KLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTV-LVTPQSTLEFKVWSH 70

Query: 130 DVFGA-QIIGTAAI 142
               A  ++G A++
Sbjct: 71  HTLKADVLLGEASL 84

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|197301 cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1, of vertebrate phospholipase D2

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 32/161 (19%)

Query: 246 DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305
            +  A+ +A   I+I  W +  ++ L R        G D  L  +LK K+E+GVRV +L+
Sbjct: 13  AVADALEQAQEEIFITDWWLSPEVFLKRPAH-----GDDWRLDIILKRKAEQGVRVCVLL 67

Query: 306 WDDKTSHDKLGVKTPGVMATHDEETKKFFK-HSSVNCVLAPRYASSKLSYFKQQIVGTIF 364
           +  K     LG+ +           +K    H ++  +  P + +S         V  ++
Sbjct: 68  F--KEVELALGINS-------GYSKRKLMLLHPNIKVMRHPDHVAS---------VVVLW 109

Query: 365 THHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL 405
            HH+K V +D        +  AF+GG+DL  GR+D  ++RL
Sbjct: 110 AHHEKMVAID--------QSVAFLGGLDLAYGRWDDSDYRL 142

Catalytic domain, repeat 1, of vertebrate phospholipase D2 (PLD2). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. They also catalyze a transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD2 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 145

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK--DDDVFGAQI 136
            SDPYV V V  A   +++V+K +  P WNE +   +   +   E++++  D+D      
Sbjct: 27  KSDPYVIVRV-GAQTFKSKVIKENLNPKWNEVYEA-VVDEVPGQELEIELFDEDPDKDDF 84

Query: 137 IGTAAIPAHTIATGELISRWY 157
           +G  +I   ++     I  W 
Sbjct: 85  LGRLSIDLGSVEKKGFIDEWL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 65  VRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEI 124
           VR T+  +R     +SDPYV + +    V +TRV+K +  PVWNE   + + +P++ L++
Sbjct: 9   VRGTNLAVRDFT--SSDPYVVLTLGNQKV-KTRVIKKNLNPVWNEELTLSVPNPMAPLKL 65

Query: 125 QVKDDDVFGA 134
           +V D D F  
Sbjct: 66  EVFDKDTFSK 75

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 79  TSDPYVTVVVPQATV----ARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDV 131
            SDPYV V + Q        +T V K +  PV+NE F+  +        +L I V D D 
Sbjct: 34  LSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS 93

Query: 132 FG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169
            G  ++IG   +     + GE +  W +++A   SP KP
Sbjct: 94  VGRNEVIGQVVLGPD--SGGEELEHWNEMLA---SPRKP 127

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 53.6 bits (129), Expect = 3e-07
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 78  ITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKD-DDVFGAQI 136
            T DPY+TV      + +TRV KN+  PVWNE F I L      L + + D +     ++
Sbjct: 457 GTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKV 516

Query: 137 IGTAAIPAHT 146
           +G+  +    
Sbjct: 517 VGSTQLDLAL 526

Length = 1227

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 47.6 bits (114), Expect = 7e-07
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 81  DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLS-NLEIQVKDDDVFGAQIIGT 139
            PYV + V + T  +++V + +  PVW E F   + +P +  LEI+VKDD     + +G+
Sbjct: 22  SPYVELTVGKTTQ-KSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDK--TGKSLGS 78

Query: 140 AAIPAHTI--ATGELISRWYD 158
             +P   +       + + + 
Sbjct: 79  LTLPLSELLKEPDLTLDQPFP 99

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|197241 cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain, repeat 2, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 14/23 (60%), Positives = 18/23 (78%)

Query: 562 IQTAYIQAIRSAQHFIYIENQYF 584
           I+  Y+ AI +A+ FIYIENQYF
Sbjct: 9   IEALYLDAIAAARRFIYIENQYF 31

Catalytic domain, repeat 2, of uncharacterized bacterial counterparts of vertebrate, yeast and plant phospholipase D (PLD, EC 3.1.4.4). PLDs hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. They also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Instead of the regulatory C2 (calcium-activated lipid binding) domain in plants and the adjacent Phox (PX) and the Pleckstrin homology (PH) N-terminal domains in most mammalian and yeast PLDs, many members in this subfamily contain a SNARE associated C-terminal domain, whose functional role is unclear. Like other PLD enzymes, members in this subfamily contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), that may play an important role in the catalysis. Length = 142

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 80  SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGA-QII 137
           SDP+V   +    V +T+ +K +  PVWNE F +P+   + + L+++V D D  G   ++
Sbjct: 20  SDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL 79

Query: 138 GTAAIP 143
           G+A I 
Sbjct: 80  GSAYID 85

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 80  SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA-QIIG 138
            DPYV V+V      RT  + N+  PVW+E   +P+  P   + ++V D +  G  + +G
Sbjct: 22  IDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLG 81

Query: 139 TAAIPA 144
           +  I  
Sbjct: 82  SVEINV 87

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 12/76 (15%)

Query: 80  SDPYVTV------VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLE-----IQVKD 128
           SDP+V V      + P     +T+V K +  P+++E F   +     ++E       VKD
Sbjct: 37  SDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKD 96

Query: 129 DDVFGA-QIIGTAAIP 143
            D+ G+    G A +P
Sbjct: 97  YDLLGSNDFEGEAFLP 112

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 71  IIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD 130
           +I K K  TSDPYVTV V + T  RT+ +  +  PVWNE F+    +    ++++V D+D
Sbjct: 13  LIAKDKTGTSDPYVTVQVGK-TKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDED 71

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|197302 cd09844, PLDc_vPLD1_2, Catalytic domain, repeat 2, of vertebrate phospholipase D1

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRAN 618
           ++SI  AY+  I +++H+IYIENQ+F+  +       +    N I   +A +I    R N
Sbjct: 6   EESIHAAYVSVIENSKHYIYIENQFFISCA------DDKVVFNKIGDAIAQRILKAHREN 59

Query: 619 ERFAV 623
           +R+ V
Sbjct: 60  KRYRV 64

Catalytic domain, repeat 2, of vertebrate phospholipase D1 (PLD1). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD1 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 182

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNE--HFNIPLAHPLS-NLEIQVKDDDVFGAQ 135
           T DPY TV + Q  VART+       P W E   F+ P        L    KD       
Sbjct: 17  TRDPYCTVSLDQVEVARTKT-VEKLNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75

Query: 136 I-IGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179
           I IG  A+    +  G+    W+ +          G S++L  ++
Sbjct: 76  IVIGKVALSKLDL--GQGKDEWFPLTPVDPDSEVQG-SVRLRARY 117

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 80   SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIP-LAHPLSNLEIQVKDDDVFGA-QII 137
            SDP+V + + + +V +T+V+K +  PVWNE F I  L      L I V D D      ++
Sbjct: 1061 SDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLL 1120

Query: 138  GTAAIPAHTI 147
            GTA I    +
Sbjct: 1121 GTAEIDLSKL 1130

Length = 1227

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 79  TSDPYVTVVVPQATV-ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-DVFGAQI 136
           T DPYVT  +      ART+V K++  PVWNE   I +      L + V D  D    ++
Sbjct: 23  TVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKL 82

Query: 137 IGTAAIP 143
           IGTA   
Sbjct: 83  IGTAEFD 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|224419 COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes [Lipid metabolism]

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 37/220 (16%), Positives = 56/220 (25%), Gaps = 90/220 (40%)

Query: 366 HHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIG 425
            H+K V++D +         AF+GG ++                            Y   
Sbjct: 165 LHRKIVVIDGK--------VAFVGGANI-------------------------GDEY-FH 190

Query: 426 TKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGR 485
                  W DLH R+ GPA  D+   F Q W                             
Sbjct: 191 KDKGLGYWRDLHVRITGPAVADLARLFIQDW----------------------------N 222

Query: 486 ISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDI 545
           +    S  L        +      +  +S         VQ+  S         P      
Sbjct: 223 LESGSSKPL--------LALVRPPLQSLSLLPVGRGSTVQVLSS--------GPDKGLGS 266

Query: 546 DDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFL 585
           +   L                ++AI SA+  I I   YF+
Sbjct: 267 ELIELN------------RLLLKAINSARESILIATPYFV 294

Length = 438

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 75  SKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPL-AHPLSNLEIQVKD-DDVF 132
           S    SDPY  + V      +T+ + N+  P WN     P+ +     L++ + D D   
Sbjct: 19  SGKGKSDPYAILSVGAQRF-KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77

Query: 133 GAQIIGTAAIPAHTIATGELIS---RWY 157
           G   +G   I    +          +W 
Sbjct: 78  GKDYLGEFDIALEEVFADGKTGQSDKWI 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQ 135
           TSDPYV       TV +++ +  +  PVW+E F +P+      L I+V D D  G  
Sbjct: 20  TSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYD-RGLT 75

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175980 cd04013, C2_SynGAP_like, C2 domain present in Ras GTPase activating protein (GAP) family

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 94  ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQV-KDDDVFG----AQIIGTAAIPAHTIA 148
           ART     +    W EHF      P+S + + + ++ D       +Q+IGT  IP   ++
Sbjct: 41  ARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVS 100

Query: 149 TGELISRWYDIIAPSGSPPKPGASIQLE 176
           + + + +WY +  P G+    G   + E
Sbjct: 101 SRQFVEKWYPVSTPKGNGKSGGKEGKGE 128

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 146

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 75  SKIITSDPYVTVVVPQATVARTRVLKNSQEPVWN---EHFNIPLAHPLSNLEIQVKDDDV 131
           SK     PY  + +    V  TRV K +  P WN   E   +      S + + VKDD  
Sbjct: 8   SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFL-VT-DRRKSRVTVVVKDDRD 65

Query: 132 FGAQIIGTAAIP-AHTIATGELISRWY 157
               ++G+ +I     I    +  +W+
Sbjct: 66  RHDPVLGSVSISLNDLIDATSVGQQWF 92

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 81  DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDD-VFGAQII 137
           DPYV V      V +T V KNS  P WNE    P   P     ++IQ++D D V    +I
Sbjct: 36  DPYVEVSFAGQKV-KTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVI 94

Query: 138 GTAAIPAHTIA 148
           GT  I    I+
Sbjct: 95  GTHFIDLSKIS 105

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|197209 cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, of bacterial cardiolipin synthase and similar proteins

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 34/91 (37%)

Query: 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGT 426
           H+K +++D +         AF+GG ++ D  Y                         +G 
Sbjct: 98  HRKILVIDGK--------IAFVGGFNIGD-EY-------------------------LGK 123

Query: 427 KAPREPWHDLHCRLDGPAAYDVLINFEQRWR 457
                PW D H R++GPA  D+   F + W 
Sbjct: 124 DPGFGPWRDTHVRIEGPAVADLQAAFLEDWY 154

Catalytic domain, repeat 1, of bacterial cardiolipin (CL) synthase and a few homologs found in eukaryotes and archaea. Bacterial CL synthases catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. The monomer of bacterial CL synthase consists of two catalytic domains. Each catalytic domain contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. Two HKD motifs from two domains form a single active site involved in phosphatidyl group transfer. Bacterial CL synthases can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity belonging to the PLD superfamily. Like other PLD enzymes, bacterial CL synthases utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 154

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA-QII 137
           +SDPY  V V    + RT  +  +  P W E + + L      +   V D+D      +I
Sbjct: 20  SSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVI 79

Query: 138 GTAAIPAHTIAT 149
           G  ++    I+ 
Sbjct: 80  GKVSLTREVISA 91

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|215467 PLN02866, PLN02866, phospholipase D

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 558 IDKSIQTAYIQAIRSAQHFIYIENQYFL 585
           +++SI  AY   I  A+HFIYIENQ+F+
Sbjct: 728 VEESIHAAYCSLIEKAEHFIYIENQFFI 755

Length = 1068

>gnl|CDD|197303 cd09845, PLDc_vPLD2_2, Catalytic domain, repeat 2, of vertebrate phospholipase D2

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 12/30 (40%), Positives = 22/30 (73%)

Query: 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSS 588
           + SI  AY+  I ++QH++Y+ENQ+F+  +
Sbjct: 6   ENSILNAYLHTIENSQHYLYLENQFFISCA 35

Catalytic domain, repeat 2, of vertebrate phospholipase D2 (PLD2). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. They also catalyze a transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD2 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 182

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 10/100 (10%)

Query: 69  SKIIRKSKIITSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFN--IPLAH-PLSN 121
             +         DPYV + ++P  + +   +T V K++  PV++E F   + L       
Sbjct: 26  RNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRT 85

Query: 122 LEIQVKDDDVFGAQ---IIGTAAIPAHTIATGELISRWYD 158
           L++ VK+   F ++   ++G   I    +   +  ++WYD
Sbjct: 86  LDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYD 125

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 14/75 (18%)

Query: 80  SDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-------D 128
           SDPYV + ++P A+ A   RT+ +  ++ P +NE       + ++  +IQ K       D
Sbjct: 36  SDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTY---YGITEEDIQRKTLRLLVLD 92

Query: 129 DDVFGAQIIGTAAIP 143
           +D FG   +G   IP
Sbjct: 93  EDRFGNDFLGETRIP 107

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 80  SDPYVTVV--VPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGA-Q 135
           SDPYVT+V    +  +A+TR + ++  P W+E F + +       +   V D    G   
Sbjct: 22  SDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81

Query: 136 IIGTA 140
           + G A
Sbjct: 82  LCGRA 86

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 74  KSKIITSDPYVTVVVPQATVARTRVLKNS-QEPVWNE--HFNI-PLAHPLSNLEIQVKDD 129
           K K+   DPY  + +      +T+      Q P W+E   F I     P+  L++ V DD
Sbjct: 16  KRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITEDKKPI--LKVAVFDD 72

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDI 159
           D     +IG   +             WY++
Sbjct: 73  DKRKPDLIGDTEVDLSPALKEGEFDDWYEL 102

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 14/89 (15%)

Query: 80  SDPYVTVVV-PQATVA---RTRVLKNSQEPVWN---EHFNIPLAHPL--SNLEIQVKDDD 130
            +PYV V + P  +     RT+ +K +  P WN   E+ N+     L    LE+ V D D
Sbjct: 37  RNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVR-RETLKERTLEVTVWDYD 95

Query: 131 VFGAQI-IGTAAIP-AHTIATGELISRWY 157
             G    +G   I  A  +   E    WY
Sbjct: 96  RDGENDFLGEVVIDLADALLDDE--PHWY 122

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)

Query: 79  TSDPYVTVVV----PQATVARTRVLKNSQEPVWNEHF--NIPLAHPL--SNLEIQVKDDD 130
           TSDPYV V +     +    +T + K +  PV+NE F  NIPL   L  + L I V D D
Sbjct: 35  TSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPL-ERLRETTLIITVMDKD 93

Query: 131 VFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171
                 +IG   +   +   G  +  W D+++    P +P A
Sbjct: 94  RLSRNDLIGKIYLGWKS--GGLELKHWKDMLS---KPRQPVA 130

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1)

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 17/111 (15%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHF---NIP-----LAHPLSNLEIQVKDDD 130
              PY  + + +  VART+V +    PVW+E F   ++P         LSN   + KD +
Sbjct: 21  VPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79

Query: 131 VFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP-PKPGASIQLELKFT 180
                 I    +    +  G+    WY + + S     + G S+++  +++
Sbjct: 80  ------IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWG-SLRIRARYS 123

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 79  TSDPYVTV--VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN----LEIQVKDDDVF 132
           +SDPYVT         +  TR+++    PVW E + + +          L  ++ D D F
Sbjct: 22  SSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRF 81

Query: 133 GA-QIIGTAAIPAHTI 147
            A   +G   I    +
Sbjct: 82  TADDRLGRVEIDLKEL 97

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	628
PLN03008	868	Phospholipase D delta	100.0
PLN02270	808	phospholipase D alpha	100.0
PLN02352	758	phospholipase D epsilon	100.0
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	100.0
PLN02866	1068	phospholipase D	100.0
PRK12452	509	cardiolipin synthetase; Reviewed	100.0
PRK01642	483	cls cardiolipin synthetase; Reviewed	100.0
PRK11263	411	cardiolipin synthase 2; Provisional	100.0
COG1502	438	Cls Phosphatidylserine/phosphatidylglycerophosphat	99.94
PHA03003	369	palmytilated EEV membrane glycoprotein; Provisiona	99.94
PRK09428	451	pssA phosphatidylserine synthase; Provisional	99.94
PHA02820	424	phospholipase-D-like protein; Provisional	99.93
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.88
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.82
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.8
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.78
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.78
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.76
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.76
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.76
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.74
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.74
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.73
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.73
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.71
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.71
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.7
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.7
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.7
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.7
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.7
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.69
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.69
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.69
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.69
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.68
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.68
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.67
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.67
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.66
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.66
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.66
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.65
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.65
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.65
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.64
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.64
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.63
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.63
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.62
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.62
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.62
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.61
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.61
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.61
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.6
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.6
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.6
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.6
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.6
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.6
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.59
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.59
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.59
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.58
cd00138	176	PLDc Phospholipase D. Active site motifs; The PLD	99.58
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.58
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.58
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.58
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.58
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.58
PRK12452	509	cardiolipin synthetase; Reviewed	99.56
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.56
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.56
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.56
TIGR03705	672	poly_P_kin polyphosphate kinase 1. Members of this	99.55
PHA03003	369	palmytilated EEV membrane glycoprotein; Provisiona	99.55
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.55
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.54
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.54
PRK05443	691	polyphosphate kinase; Provisional	99.54
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.54
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.54
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.53
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.53
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.53
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.52
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.52
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.52
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.51
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.51
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.5
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.5
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.5
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.5
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.5
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.5
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.49
PRK13912	177	nuclease NucT; Provisional	99.49
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.49
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.48
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.48
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.47
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.46
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.45
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.45
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.42
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.39
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.39
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.39
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.38
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.36
PRK01642	483	cls cardiolipin synthetase; Reviewed	99.34
PF13091	126	PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A	99.21
PRK11263	411	cardiolipin synthase 2; Provisional	99.21
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.2
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.16
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.11
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.07
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.05
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	99.03
PHA02820	424	phospholipase-D-like protein; Provisional	98.99
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	98.98
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.97
PLN02223	537	phosphoinositide phospholipase C	98.96
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.96
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.94
PLN02952	599	phosphoinositide phospholipase C	98.89
PLN02230	598	phosphoinositide phospholipase C 4	98.79
KOG3603	456	consensus Predicted phospholipase D [General funct	98.78
PLN02222	581	phosphoinositide phospholipase C 2	98.71
PLN02228	567	Phosphoinositide phospholipase C	98.69
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.69
COG1502	438	Cls Phosphatidylserine/phosphatidylglycerophosphat	98.69
KOG3603	456	consensus Predicted phospholipase D [General funct	98.65
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.65
PF00614	28	PLDc: Phospholipase D Active site motif; InterPro:	98.6
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.59
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.54
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.45
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.23
PRK09428	451	pssA phosphatidylserine synthase; Provisional	98.14
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	97.98
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.91
PF07894	284	DUF1669: Protein of unknown function (DUF1669); In	97.77
smart00155	28	PLDc Phospholipase D. Active site motifs. Phosphat	97.61
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.5
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.46
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.28
PF13918	177	PLDc_3: PLD-like domain	97.25
TIGR03705	672	poly_P_kin polyphosphate kinase 1. Members of this	97.2
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	97.14
PRK05443	691	polyphosphate kinase; Provisional	97.09
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.04
PF13090	352	PP_kinase_C: Polyphosphate kinase C-terminal domai	97.04
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.03
cd00138	176	PLDc Phospholipase D. Active site motifs; The PLD	97.01
COG0855	696	Ppk Polyphosphate kinase [Inorganic ion transport	96.96
PLN02964	644	phosphatidylserine decarboxylase	96.83
PRK13912	177	nuclease NucT; Provisional	96.6
COG3886	198	Predicted HKD family nuclease [DNA replication, re	96.35
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	96.25
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	96.21
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.91
PF11495	233	Regulator_TrmB: Archaeal transcriptional regulator	95.54
PF13091	126	PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A	95.49
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.28
PLN02352	758	phospholipase D epsilon	95.17
PLN03008	868	Phospholipase D delta	94.82
PLN02270	808	phospholipase D alpha	94.8
KOG1327	529	consensus Copine [Signal transduction mechanisms]	94.76
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	94.46
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	94.08
PF13918	177	PLDc_3: PLD-like domain	93.85
PF15627	156	CEP76-C2: CEP76 C2 domain	93.81
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	91.86
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	89.98
KOG3964	469	consensus Phosphatidylglycerolphosphate synthase [	89.44
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	88.49
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	88.34
PLN02866	1068	phospholipase D	88.04
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	84.54
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	83.89
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	83.34
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	82.83
KOG1452	442	consensus Predicted Rho GTPase-activating protein	80.41

>PLN03008 Phospholipase D delta

Probab=100.00  E-value=3.5e-107  Score=910.53  Aligned_cols=620  Identities=73%  Similarity=1.214  Sum_probs=543.5

Q ss_pred             CCCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEE
Q 006854            6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVT   85 (628)
Q Consensus         6 ~~~~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~   85 (628)
                      +.-+.++.++||+|.|+|++|++||+||..+++++.+|..+..|...+.+..-.....+..+.+++-..++.+++||||+
T Consensus         3 ~~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~   82 (868)
T PLN03008          3 EKVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVT   82 (868)
T ss_pred             cccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEE
Confidence            34578899999999999999999999999999899999876766654332222222333333345556777889999999


Q ss_pred             EEECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854           86 VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (628)
Q Consensus        86 v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~  165 (628)
                      |.++..++.||+|++++.||+|||+|.|.+.++...|+|+|||+|.+++++||.+.||++++..|+..+.|++|.+..++
T Consensus        83 I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~k  162 (868)
T PLN03008         83 VVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGK  162 (868)
T ss_pred             EEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCC
Confidence            99988778899999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceEEEEEEEeecCCCCccccccCCCCCCCCccCccccCCCCCceeEeecccccCCCCCceecCCCCccCCcchHH
Q 006854          166 PPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWE  245 (628)
Q Consensus       166 ~~~~~g~i~l~l~y~p~~~~~~~~~gv~~~p~~~~~~~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~  245 (628)
                      +.+..++|+++|+|.|....+.|..|++++|++.+++.++||.+.|++|++|+|+++++|+.|.+.|.+|..|++..||+
T Consensus       163 p~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwe  242 (868)
T PLN03008        163 PPKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWE  242 (868)
T ss_pred             CCCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccC
Q 006854          246 DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMAT  325 (628)
Q Consensus       246 ~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~  325 (628)
                      +++.||.+|+++|||.+|+++|.++|+|++..  |.+...+|.++|++||++||+|.||+||+..|....+++..|+|.+
T Consensus       243 di~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~--~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~t  320 (868)
T PLN03008        243 DICYAISEAHHMIYIVGWSIFHKIKLVRETKV--PRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGT  320 (868)
T ss_pred             HHHHHHHhhhheEEEeceeecceeEEecCCCC--CCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccccccccccc
Confidence            99999999999999999999999999998752  2223589999999999999999999999999886677888999999


Q ss_pred             ChHHHHhhhccCCceEEeccCCCCCccchhhhc-----------cccccccCcceEEEEecCCCCCCcceEEEEccccCC
Q 006854          326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-----------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC  394 (628)
Q Consensus       326 ~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~-----------~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~  394 (628)
                      |++++.+.+++.+|.|.++|+++....+++++.           .....++||||+||||+++++.+++++|||||+||+
T Consensus       321 hdeet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc  400 (868)
T PLN03008        321 HDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLC  400 (868)
T ss_pred             ccHHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceecc
Confidence            999999999999999999998877766666542           234679999999999998777889999999999999


Q ss_pred             CCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcccchhhhhhccccc
Q 006854          395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSH  474 (628)
Q Consensus       395 ~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~  474 (628)
                      ++||||+.|++++++++.+.+||+||++.++.+.+++||||+|++|+||+|.+|+.+|.+||+++++.+..-...++...
T Consensus       401 ~gRwDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~  480 (868)
T PLN03008        401 DGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTH  480 (868)
T ss_pred             CCccCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccc
Confidence            99999999999999999999999999987777788899999999999999999999999999999885311112234456


Q ss_pred             ccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhcccccccc
Q 006854          475 WRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAK  554 (628)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~  554 (628)
                      |.++.|+.+.++++++.|......++....+...+.+...+..++++|.+|++||++.++++++|..+++++..+|++++
T Consensus       481 ~~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk  560 (868)
T PLN03008        481 WQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAK  560 (868)
T ss_pred             cccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccccc
Confidence            78899999999999887654322222222222111111111245688999999999999999999999999999999999


Q ss_pred             CcchhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEEEe
Q 006854          555 DVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRC  627 (628)
Q Consensus       555 ~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~~  627 (628)
                      +...|+||++||++||++||||||||||||++..++|+++++.++.|+|++||+++|+++++++++|+||||+
T Consensus       561 ~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi  633 (868)
T PLN03008        561 RLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI  633 (868)
T ss_pred             ccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999997

>PLN02270 phospholipase D alpha

Probab=100.00  E-value=1.1e-94  Score=810.75  Aligned_cols=555  Identities=47%  Similarity=0.826  Sum_probs=486.1

Q ss_pred             eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccc-cCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854           12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACD-VCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ   90 (628)
Q Consensus        12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~   90 (628)
                      ..++||+|+|+|++|++|++++. ...++.++..+. .|+..                        .+++||||+|.+++
T Consensus         3 ~~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~~------------------------~~~~~~y~tv~~~~   57 (808)
T PLN02270          3 QILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGVG------------------------KGESQLYATIDLEK   57 (808)
T ss_pred             ceeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccCC------------------------CCCCCceEEEEeCC
Confidence            35999999999999999998644 444444443222 11111                        13599999999999


Q ss_pred             eeeeeeccccCC-CCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCCC
Q 006854           91 ATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP  169 (628)
Q Consensus        91 ~~~~kT~v~~~~-~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~  169 (628)
                      ..+.||+++.+. .||.|||+|.+++.+..+.|.|+|+|.|.++..+||.+.||+.+|..|+.+++||++++..+++.+.
T Consensus        58 a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~  137 (808)
T PLN02270         58 ARVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHG  137 (808)
T ss_pred             cEEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCC
Confidence            999999999884 6999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CceEEEEEEEeecCCCCccccccCCCCCCCCccCccccCCCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHH
Q 006854          170 GASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH  249 (628)
Q Consensus       170 ~g~i~l~l~y~p~~~~~~~~~gv~~~p~~~~~~~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~  249 (628)
                      ..+|+++|+|.|.+.++.|..|+++ +++.+++.++||.+.|++|++|+|+++.+|+.|.+.|.+|..|++..||+++++
T Consensus       138 ~~~~~~~~~f~~~~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~  216 (808)
T PLN02270        138 GSKIHVKLQYFEVTKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFD  216 (808)
T ss_pred             CCEEEEEEEEEEcccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHH
Confidence            8899999999999999999999976 799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHH
Q 006854          250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEE  329 (628)
Q Consensus       250 aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~  329 (628)
                      ||.+||++|||++|.|++.++|+|++..++|.| ..+|.++|++||++||+|+||+||+..+..  .++..|+|.+|+++
T Consensus       217 AI~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~~-~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~--~~k~~g~m~thd~~  293 (808)
T PLN02270        217 AITNAKHLIYITGWSVYTEISLVRDSRRPKPGG-DVTIGELLKKKASEGVRVLLLVWDDRTSVD--LLKKDGLMATHDEE  293 (808)
T ss_pred             HHHhhhcEEEEEEeecCCCceEecCCCCCCCCC-cchHHHHHHHHhcCCCEEEEEEEcCcccch--hhccccccccCHHH
Confidence            999999999999999999999999765444443 579999999999999999999999987653  24567889999999


Q ss_pred             HHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCC---CCCCcceEEEEccccCCCCCCCCCCCCCc
Q 006854          330 TKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA---SGNNRKITAFIGGIDLCDGRYDTPEHRLF  406 (628)
Q Consensus       330 ~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~---~~~~~~~vafvGG~ni~~~r~d~~~H~~~  406 (628)
                      +.+++++.+|+|++++++|+.+..++++......++||||+||||++.   .+++++.+|||||+||+++||||+.|+++
T Consensus       294 t~~~f~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf  373 (808)
T PLN02270        294 TENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLF  373 (808)
T ss_pred             HHHHhccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCcccccc
Confidence            999999999999999999876655665556677899999999999973   34678999999999999999999999999


Q ss_pred             cCCcccccCCCCCCCCCC---CCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccchhhc
Q 006854          407 RDLDTVFKDDFHNPTYPI---GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKI  483 (628)
Q Consensus       407 ~~~~~~~~~~~~n~~~~~---~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (628)
                      +++++.+.+||+||.|.+   +.+.+++||||+|++|+||+|.+|+.+|.+||+.+++..               .++..
T Consensus       374 ~~Ldt~h~~Df~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~---------------ll~~~  438 (808)
T PLN02270        374 RTLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKD---------------ILVQL  438 (808)
T ss_pred             ccccccccccccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCcc---------------chhhh
Confidence            999999999999998864   566789999999999999999999999999999988763               11222


Q ss_pred             cccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCcchhhHHH
Q 006854          484 GRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQ  563 (628)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~  563 (628)
                      +++.++..|..          +  .++     +.+.++|.+|++||++.+..+++|..+++++.+|++++++...+++|+
T Consensus       439 ~~~~~~~~P~~----------~--~~~-----p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~  501 (808)
T PLN02270        439 RELEDVIIPPS----------P--VMF-----PDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQ  501 (808)
T ss_pred             cccccccCCCC----------c--ccC-----CCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHH
Confidence            22322221111          0  001     234578999999999999999999999998889999999888899999


Q ss_pred             HHHHHHHHhccceEEEeecccccccCCCCCc----cCCCCCChhHHHHHHHHHHHHHcCCceEEEEEe
Q 006854          564 TAYIQAIRSAQHFIYIENQYFLGSSYAWPSY----KNAGADNLIPMELALKIASKIRANERFAVARRC  627 (628)
Q Consensus       564 ~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~----~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~~  627 (628)
                      .+|+.||++|+||||||||||++..++|+++    ++.++.|+|++||+++|+++++++++|+||||+
T Consensus       502 ~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi  569 (808)
T PLN02270        502 DAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV  569 (808)
T ss_pred             HHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence            9999999999999999999999999999877    888999999999999999999999999999997

>PLN02352 phospholipase D epsilon

Probab=100.00  E-value=1.4e-87  Score=752.58  Aligned_cols=508  Identities=43%  Similarity=0.740  Sum_probs=430.7

Q ss_pred             eeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854           11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ   90 (628)
Q Consensus        11 ~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~   90 (628)
                      +--++||+|+++|.+|+  |        ++.++.....|..+                           .||||+|.++.
T Consensus         4 ~~~~lhg~l~~~i~~~~--~--------~~~~~~~~~~~~~~---------------------------~~~y~tv~~~~   46 (758)
T PLN02352          4 KQKFFHGTLEATIFDAT--P--------YTPPFPFNCIFLNG---------------------------KATYVTIKIGN   46 (758)
T ss_pred             cccccccceEEEEEEee--e--------hhhcccccccccCC---------------------------CCceEEEEeCC
Confidence            34689999999999999  2        33344333333322                           59999999999


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCCC-ceEEEEEEEcCCCCCeeeEEEeccccccccCce-eEEEEEccCCCCCCCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGEL-ISRWYDIIAPSGSPPK  168 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~  168 (628)
                      ..+.||   .+..||.|+|+|.+++.+.. +.|.|+|+|    +..+||.+.||+.+|..|+. +++||++++..+++..
T Consensus        47 ~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~  119 (758)
T PLN02352         47 KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNP  119 (758)
T ss_pred             cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCC
Confidence            999999   56679999999999999988 789999998    47899999999999999866 9999999999999875


Q ss_pred             CCceEEEEEEEeecCCCCccccccCCCCCCCCccCccccCCCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHH
Q 006854          169 PGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDIC  248 (628)
Q Consensus       169 ~~g~i~l~l~y~p~~~~~~~~~gv~~~p~~~~~~~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~  248 (628)
                      . .+|+++|+|.|.++++.|..|+.+ +++.+++.++||.+.|++|++|+|+++.+|+.|.+.|    -|...++|++|+
T Consensus       120 ~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~  193 (758)
T PLN02352        120 E-LKLRFMLWFRPAELEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVY  193 (758)
T ss_pred             C-CEEEEEEEEEEhhhCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHH
Confidence            4 799999999999999999999977 6999999999999999999999999999999999988    455578999999


Q ss_pred             HHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChH
Q 006854          249 HAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDE  328 (628)
Q Consensus       249 ~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~  328 (628)
                      +||.+||++|+|++|+|+++++|+|++..+.|.+.+.+|.++|++||++||+||||+||+.++...  ++..|+|.++++
T Consensus       194 eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~  271 (758)
T PLN02352        194 KAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDE  271 (758)
T ss_pred             HHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchH
Confidence            999999999999999999999999987543333335899999999999999999999999887643  466778888899


Q ss_pred             HHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCC--CCCcceEEEEccccCCCCCCCCCCCCCc
Q 006854          329 ETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQAS--GNNRKITAFIGGIDLCDGRYDTPEHRLF  406 (628)
Q Consensus       329 ~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~--~~~~~~vafvGG~ni~~~r~d~~~H~~~  406 (628)
                      +..+++++.+|.|.+.|.++.         .....++||||+||||+..+  +..++.+|||||+|||++||||++|+++
T Consensus       272 ~~~~~f~h~~V~~~l~pr~~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~  342 (758)
T PLN02352        272 DAFAYFKHTKVVCKLCPRLHK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLF  342 (758)
T ss_pred             HHHhhccCCceEEeecccccc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcc
Confidence            999999999999998776543         22467999999999999732  3678889999999999999999999999


Q ss_pred             cCCccc-ccCCCCCCCCC---CCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccchhh
Q 006854          407 RDLDTV-FKDDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIK  482 (628)
Q Consensus       407 ~~~~~~-~~~~~~n~~~~---~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (628)
                      +++++. +.+||+|+.+.   .+.+.+++||||+||+|+||||+||..+|.+||+++++..               .++.
T Consensus       343 d~l~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~---------------~l~p  407 (758)
T PLN02352        343 RTLNTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS---------------VLVP  407 (758)
T ss_pred             cccccccccccccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc---------------ccCC
Confidence            998875 56899998875   2556789999999999999999999999999999988753               0111


Q ss_pred             ccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCcchhhHH
Q 006854          483 IGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSI  562 (628)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I  562 (628)
                      ..+..++..            +|+   .+    ..+.++|.+|++||.+.++.+++|.              +...|+||
T Consensus       408 ~~~~~~~~~------------~p~---~~----~~~~~~w~VQv~RSid~~sa~~~P~--------------~~~~erSI  454 (758)
T PLN02352        408 TSSIRNLVH------------QPG---SS----ESNNRNWKVQVYRSIDHVSASHMPR--------------NLPVERSI  454 (758)
T ss_pred             ccccccccc------------CCC---CC----cccCCcccceEEEecCccccccCCC--------------CCchhhHH
Confidence            111111110            111   00    1245789999999998877777764              23458999


Q ss_pred             HHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEEEe
Q 006854          563 QTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRC  627 (628)
Q Consensus       563 ~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~~  627 (628)
                      +++|++||++||||||||||||++.++.|+++++.++.|+|+++|+++|++|++++++|+||||+
T Consensus       455 q~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi  519 (758)
T PLN02352        455 HEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI  519 (758)
T ss_pred             HHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999997

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-76  Score=659.03  Aligned_cols=554  Identities=40%  Similarity=0.645  Sum_probs=461.2

Q ss_pred             CCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEE
Q 006854            7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV   86 (628)
Q Consensus         7 ~~~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v   86 (628)
                      +.+..+.+.||+|.++|..+..++.+.....+.+..+..+..|......-+-..+.+|.+.++ .++-+...+.++|+++
T Consensus        66 ~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~e~Ylt~  144 (887)
T KOG1329|consen   66 SGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSL-NSSMEKRKTLENYLTV  144 (887)
T ss_pred             CcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCc-ccchhhhhhccchhee
Confidence            456678999999999999999999877666555444444433222211111111233333221 1122333458999999


Q ss_pred             EECCeeeeeeccccCC-CCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCC
Q 006854           87 VVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG  164 (628)
Q Consensus        87 ~l~~~~~~kT~v~~~~-~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  164 (628)
                      .+......+|....+. .+|.|.+.|.+...+....+.+++.+.+..+ ...+|.+.+|+..+..+....+|+++...++
T Consensus       145 ~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~  224 (887)
T KOG1329|consen  145 VLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDG  224 (887)
T ss_pred             eechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCC
Confidence            9998777899999887 8999999999999988889999999999999 9999999999999999999999999999988


Q ss_pred             CCCCCCceEEEEEEEeecCCCCccccccCCCCCCCCccCccccCCCCCceeEeecccccCCCCCceecCCCC-ccCCcch
Q 006854          165 SPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK-LYKPGTC  243 (628)
Q Consensus       165 ~~~~~~g~i~l~l~y~p~~~~~~~~~gv~~~p~~~~~~~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~-~y~~~~~  243 (628)
                      ++......+.+++.|.+......+..+..+.+++.+.+.+.++...+..+++|.+.+.-+++.|++.+..|+ -|.+..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~  304 (887)
T KOG1329|consen  225 KPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKY  304 (887)
T ss_pred             ccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhH
Confidence            887777789999999999999999999999999999999999999999999999999999999999999999 7888999


Q ss_pred             HHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcc
Q 006854          244 WEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVM  323 (628)
Q Consensus       244 f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~  323 (628)
                      |++++.||.+|++.|||++|++.|+++|+|+...+    ...+|.++|++||++||+|+||+||+..+...        +
T Consensus       305 ~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~----~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~--------i  372 (887)
T KOG1329|consen  305 WEDVADAIENARREIYITGWWLSPELYLVRPPKGP----NDWRLDELLKRKAEEGVRVLILVWKDVTSALG--------I  372 (887)
T ss_pred             HHHHHHHHHhhhhEEEEeccccCceEEEEccCCCC----CceEHHHHHHHHHhCCcEEEEEEeccchhccc--------c
Confidence            99999999999999999999999999999987632    35899999999999999999999999977542        3


Q ss_pred             cCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCC
Q 006854          324 ATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEH  403 (628)
Q Consensus       324 ~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H  403 (628)
                      +++.++...++++++|+|+.+|.++.++.        ...|+||||+||||.+        +||+||+|||+|||||++|
T Consensus       373 ~S~~~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH  436 (887)
T KOG1329|consen  373 NSHYEKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEH  436 (887)
T ss_pred             CchhHHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCccc
Confidence            35678888889999999998888766421        2578999999999998        9999999999999999999


Q ss_pred             CCccCCcccccCCCCCCCCC-----CCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcccchhhhhhccccccccc
Q 006854          404 RLFRDLDTVFKDDFHNPTYP-----IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD  478 (628)
Q Consensus       404 ~~~~~~~~~~~~~~~n~~~~-----~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~  478 (628)
                      ++++.++.++++||+||++.     ++.+.||+||||+||+|.||+|+|+.++|.||||++...+.           .  
T Consensus       437 ~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~-----------~--  503 (887)
T KOG1329|consen  437 PLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK-----------P--  503 (887)
T ss_pred             cccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC-----------C--
Confidence            99999999999999999987     67889999999999999999999999999999999876530           0  


Q ss_pred             chhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCcch
Q 006854          479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI  558 (628)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  558 (628)
                         ..+.++.+.+.+..       ..|+. +     ...++..+.+|+++|.+.+...+    +....+.|+|+++....
T Consensus       504 ---~~~~~p~L~p~~~~-------~~~~~-~-----~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~  563 (887)
T KOG1329|consen  504 ---YDDSLPLLLPISDI-------TGPSE-P-----NEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEI  563 (887)
T ss_pred             ---CCccceeecChhhh-------cCCCC-c-----cccccccccccceeeccCCcccc----hHHhhhhcccccCCCch
Confidence               01122222222221       01110 1     13456789999999999876544    56778889999999889


Q ss_pred             hhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEEEe
Q 006854          559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRC  627 (628)
Q Consensus       559 e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~~  627 (628)
                      |.||++||+++|++||||||||||||+++++.|+.     +.|.+++||+++|++|+++||+||||||+
T Consensus       564 e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~-----~~n~v~~ela~rIv~a~ra~e~frVYIVI  627 (887)
T KOG1329|consen  564 EDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDS-----VLNKVGDELALRIVKAIRAGEKFRVYIVI  627 (887)
T ss_pred             HHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCc-----ccchHHHHHHHHHHHHHhcCCceEEEEEE
Confidence            99999999999999999999999999999876544     46778899999999999999999999997

>PLN02866 phospholipase D

Probab=100.00  E-value=4.8e-55  Score=498.39  Aligned_cols=347  Identities=30%  Similarity=0.458  Sum_probs=245.1

Q ss_pred             CccccCC----CCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCC
Q 006854          203 NAYFPLR----KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRP  278 (628)
Q Consensus       203 ~s~~P~~----~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~  278 (628)
                      .+++|++    .+|.+++|+||                    +++|.+|++||++||++|+|++|+|+|.+||+|++...
T Consensus       321 ~SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D~  380 (1068)
T PLN02866        321 GSFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHDH  380 (1068)
T ss_pred             CCcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCCc
Confidence            4556766    68999999998                    68999999999999999999999999999999853211


Q ss_pred             CCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhh--ccCCceEEeccCCCCCccchhh
Q 006854          279 LPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFF--KHSSVNCVLAPRYASSKLSYFK  356 (628)
Q Consensus       279 ~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l--~~~gv~~~~~~~~~~~~~~~~~  356 (628)
                        .  +.+|.++|++||++||+||||+||..|.....  .        +....+.+  .++||+|...   |....    
T Consensus       381 --~--g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~--~--------S~~~k~~L~~lh~gI~V~r~---P~~~~----  439 (1068)
T PLN02866        381 --E--SSRLDSLLEAKAKQGVQIYILLYKEVALALKI--N--------SVYSKRRLLGIHENVKVLRY---PDHFS----  439 (1068)
T ss_pred             --h--HHHHHHHHHHHHHCCCEEEEEEECcccccccc--C--------chhhHHHHHHhCCCeEEEec---Ccccc----
Confidence              3  48999999999999999999999998643210  0        11122222  3689998632   22110    


Q ss_pred             hccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCCccCCcc-cccCCCCCCCCC------------
Q 006854          357 QQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDT-VFKDDFHNPTYP------------  423 (628)
Q Consensus       357 ~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~-~~~~~~~n~~~~------------  423 (628)
                        ....++|||||++|||++        +||+||+|||.+||||++|.+.|.... +-++||.|++..            
T Consensus       440 --~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~  509 (1068)
T PLN02866        440 --SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDE  509 (1068)
T ss_pred             --cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccc
Confidence              224689999999999998        999999999999999999999874433 445699998753            


Q ss_pred             -CCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcccchhhhhhcccccc--------------------------c
Q 006854          424 -IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHW--------------------------R  476 (628)
Q Consensus       424 -~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~--------------------------~  476 (628)
                       ++...+++||||+||+|+||+|.+|+++|++|||.+++.+.   ..+....|                          .
T Consensus       510 ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~---~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~  586 (1068)
T PLN02866        510 LDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKA---PNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQE  586 (1068)
T ss_pred             cccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccC---ccccccccccccccccccccccccccccccccccc
Confidence             23455678999999999999999999999999999887630   00000000                          0


Q ss_pred             c--------cc---hhhccccccccCcccccc------------------------CC----CccccCC---CC--cc--
Q 006854          477 D--------DY---LIKIGRISWILSPELSLK------------------------TN----GTTIVPR---DD--NV--  510 (628)
Q Consensus       477 ~--------~~---~~~~~~~~~~~~~~~~~~------------------------~~----~~~~~p~---~~--~~--  510 (628)
                      +        +.   ..+.+.++.+++......                        ++    ..+..|-   .+  ..  
T Consensus       587 ~~~~~~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  666 (1068)
T PLN02866        587 DNQKGIARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLD  666 (1068)
T ss_pred             cccccccccccccccccccccccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            0        00   000011222222211000                        00    0000000   00  00  


Q ss_pred             -------------------c-------------ccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCc-c
Q 006854          511 -------------------V-------------RVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDV-V  557 (628)
Q Consensus       511 -------------------~-------------~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~-~  557 (628)
                                         .             ........++|.+||+||.+.++.                   +. .
T Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~-------------------G~~~  727 (1068)
T PLN02866        667 LSVKMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSA-------------------GTSQ  727 (1068)
T ss_pred             ccccccccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccC-------------------CCCc
Confidence                               0             000012346799999999854432                   22 3


Q ss_pred             hhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEEEe
Q 006854          558 IDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRC  627 (628)
Q Consensus       558 ~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~~  627 (628)
                      +|+||++||+++|++|+||||||||||++...     .+..+.|+|+++|+++|++|++++++||||||+
T Consensus       728 ~E~SI~~AYi~~I~~A~hfIYIENQFFis~~~-----~~~~i~N~I~~AL~~RI~rA~~~~~~frviIVi  792 (1068)
T PLN02866        728 VEESIHAAYCSLIEKAEHFIYIENQFFISGLS-----GDDTIQNRVLEALYRRILRAHKEKKCFRVIIVI  792 (1068)
T ss_pred             hHHHHHHHHHHHHHhcccEEEEeccccccccc-----ccccccchHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            58999999999999999999999999999852     256789999999999999999999999999997

>PRK12452 cardiolipin synthetase; Reviewed

Probab=100.00  E-value=6.7e-39  Score=357.26  Aligned_cols=260  Identities=22%  Similarity=0.332  Sum_probs=201.3

Q ss_pred             CccccCCCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCC
Q 006854          203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG  282 (628)
Q Consensus       203 ~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g  282 (628)
                      .+.+|.+.+|.++++++|                    +++|++++++|++|+++|+|++|+|.+       |.    .|
T Consensus       131 ~~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~~-------d~----~g  179 (509)
T PRK12452        131 FGGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYKS-------DE----IG  179 (509)
T ss_pred             ccCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEeC-------Cc----HH
Confidence            466899999999999998                    689999999999999999999999965       33    44


Q ss_pred             CCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhhccCCceEEe-ccCCCCCccchhhhcccc
Q 006854          283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL-APRYASSKLSYFKQQIVG  361 (628)
Q Consensus       283 ~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~-~~~~~~~~~~~~~~~~~~  361 (628)
                        ..+.++|++||+|||+|||| +|+.||...            .....+.|+++||++.. .|....    ++   ..+
T Consensus       180 --~~i~~aL~~aa~rGV~VRiL-~D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~~----~~---~~~  237 (509)
T PRK12452        180 --TKVRDALIKKAKDGVIVRFL-YDGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFSA----WL---LET  237 (509)
T ss_pred             --HHHHHHHHHHHHCCCEEEEE-EECCCCCCC------------CHHHHHHHHhCCeEEEEecCcccc----cc---ccc
Confidence              79999999999999999999 599998631            35678889999999973 332111    11   335


Q ss_pred             ccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEe
Q 006854          362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD  441 (628)
Q Consensus       362 ~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~  441 (628)
                      .++|||||++||||+        +||+||+|+++++...                          ....++|||+|++++
T Consensus       238 ~n~RnHRKi~VIDg~--------ia~~GG~Ni~d~y~~~--------------------------~~~~~~WrD~~~~i~  283 (509)
T PRK12452        238 VNYRNHRKIVIVDGE--------IGFTGGLNVGDEYLGR--------------------------SKKFPVWRDSHLKVE  283 (509)
T ss_pred             ccCCCCCeEEEEcCC--------EEEeCCcccchhhcCC--------------------------CCCCCCceEEEEEEE
Confidence            789999999999998        9999999999954421                          123468999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCC
Q 006854          442 GPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPEN  521 (628)
Q Consensus       442 Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  521 (628)
                      ||+|.+++..|.++|+.+++...      . ..|        ...   ...         ..+|+.        ....+.
T Consensus       284 Gp~V~~l~~~F~~dW~~~~~~~~------~-~~~--------~~~---~~~---------~~~~~~--------~~~~~~  328 (509)
T PRK12452        284 GKALYKLQAIFLEDWLYASSGLN------T-YSW--------DPF---MNR---------QYFPGK--------EISNAE  328 (509)
T ss_pred             CHHHHHHHHHHHHHHHHhhCccc------c-ccc--------ccc---cch---------hcCCCc--------cccCCC
Confidence            99999999999999998765310      0 000        000   000         001110        011245


Q ss_pred             eeeEEeeeccCCccCCCCCCccchhccccccccCcchhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCC
Q 006854          522 WHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADN  601 (628)
Q Consensus       522 ~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n  601 (628)
                      ..+|++.+.|..                        .+.+|+++|+++|.+||++|||+||||+|+.             
T Consensus       329 ~~~q~~~sgp~~------------------------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~-------------  371 (509)
T PRK12452        329 GAVQIVASGPSS------------------------DDKSIRNTLLAVMGSAKKSIWIATPYFIPDQ-------------  371 (509)
T ss_pred             eEEEEEeCCCCc------------------------hhHHHHHHHHHHHHHhhhEEEEECCccCCCH-------------
Confidence            689999984311                        1468999999999999999999999999985             


Q ss_pred             hhHHHHHHHHHHHHHcCCceEEEE
Q 006854          602 LIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       602 ~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                          +|.++|..|+++|+++|+++
T Consensus       372 ----~l~~aL~~Aa~rGV~Vrii~  391 (509)
T PRK12452        372 ----ETLTLLRLSAISGIDVRILY  391 (509)
T ss_pred             ----HHHHHHHHHHHcCCEEEEEc
Confidence                79999999999999999876

>PRK01642 cls cardiolipin synthetase; Reviewed

Probab=100.00  E-value=8.7e-38  Score=347.46  Aligned_cols=257  Identities=21%  Similarity=0.312  Sum_probs=200.2

Q ss_pred             CccccCCCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCC
Q 006854          203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG  282 (628)
Q Consensus       203 ~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g  282 (628)
                      .+.+|++.+|.++++.+|                    +++|++|+++|++|+++|+|++|+|.+       |.    .|
T Consensus       107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~~~-------d~----~g  155 (483)
T PRK01642        107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIWRP-------DG----LG  155 (483)
T ss_pred             ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEEcc-------CC----cH
Confidence            466899999999999998                    689999999999999999999999854       33    44


Q ss_pred             CCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhhccCCceEEec-cCCCCCccchhhhcccc
Q 006854          283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA-PRYASSKLSYFKQQIVG  361 (628)
Q Consensus       283 ~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~-~~~~~~~~~~~~~~~~~  361 (628)
                        .++.++|++||+|||+|||| +|..|+....           .....+.|+++||++... |....+   ++   ..+
T Consensus       156 --~~i~~aL~~aa~rGV~VriL-~D~~Gs~~~~-----------~~~~~~~L~~~Gi~v~~~~p~~~~~---~~---~~~  215 (483)
T PRK01642        156 --DQVAEALIAAAKRGVRVRLL-YDSIGSFAFF-----------RSPYPEELRNAGVEVVEFLKVNLGR---VF---RRR  215 (483)
T ss_pred             --HHHHHHHHHHHHCCCEEEEE-EECCCCCCCC-----------cHHHHHHHHHCCCEEEEecCCCccc---cc---ccc
Confidence              79999999999999999999 5999986421           233677899999998842 221111   11   335


Q ss_pred             ccccCcceEEEEecCCCCCCcceEEEEccccCCC-CCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeE
Q 006854          362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD-GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL  440 (628)
Q Consensus       362 ~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~-~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l  440 (628)
                      .++|||||++||||+        +||+||+|+++ ++...                          ....++|||+|+++
T Consensus       216 ~n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~--------------------------~~~~~~w~D~~~~i  261 (483)
T PRK01642        216 LDLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQ--------------------------DPGVGQWRDTHVRI  261 (483)
T ss_pred             cccccCceEEEEcCC--------EEEeCCcccCCHHHhCC--------------------------CCCCCCcEEEEEEE
Confidence            789999999999998        99999999999 65532                          12346899999999


Q ss_pred             eCHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCC
Q 006854          441 DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPE  520 (628)
Q Consensus       441 ~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  520 (628)
                      +||+|.+++..|.++|+.+++...               ...   .     +..        ..++         ....+
T Consensus       262 ~Gp~v~~l~~~F~~dW~~~~~~~~---------------~~~---~-----~~~--------~~~~---------~~~~~  301 (483)
T PRK01642        262 EGPVVTALQLIFAEDWEWETGERI---------------LPP---P-----PDV--------LIMP---------FEEAS  301 (483)
T ss_pred             EcHHHHHHHHHHHHHHHHHhCccc---------------CCC---C-----ccc--------ccCC---------ccCCC
Confidence            999999999999999998765410               000   0     000        0010         01123


Q ss_pred             CeeeEEeeeccCCccCCCCCCccchhccccccccCcchhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCC
Q 006854          521 NWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGAD  600 (628)
Q Consensus       521 ~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~  600 (628)
                      +..+|++++.|.        .                .+..++++|+++|.+|+++|||+||||+|+.            
T Consensus       302 ~~~~qi~~sgP~--------~----------------~~~~~~~~~~~~I~~A~~~I~I~tpYfip~~------------  345 (483)
T PRK01642        302 GHTVQVIASGPG--------D----------------PEETIHQFLLTAIYSARERLWITTPYFVPDE------------  345 (483)
T ss_pred             CceEEEEeCCCC--------C----------------hhhHHHHHHHHHHHHhccEEEEEcCCcCCCH------------
Confidence            468999988431        1                1467999999999999999999999999986            


Q ss_pred             ChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          601 NLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       601 n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                           +|.++|..|+++|+++++++
T Consensus       346 -----~i~~aL~~Aa~rGV~Vril~  365 (483)
T PRK01642        346 -----DLLAALKTAALRGVDVRIII  365 (483)
T ss_pred             -----HHHHHHHHHHHcCCEEEEEe
Confidence                 79999999999999999886

>PRK11263 cardiolipin synthase 2; Provisional

Probab=100.00  E-value=7.1e-35  Score=316.56  Aligned_cols=250  Identities=21%  Similarity=0.315  Sum_probs=190.6

Q ss_pred             cCCCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCc
Q 006854          207 PLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT  286 (628)
Q Consensus       207 P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~  286 (628)
                      +.+.||.++++.||                    +++|++++++|++|+++|+|++|+|.+       |.    .|  ..
T Consensus         3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~~-------d~----~g--~~   49 (411)
T PRK11263          3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILFE-------DK----VG--KQ   49 (411)
T ss_pred             cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEec-------Cc----hH--HH
Confidence            56789999999998                    689999999999999999999999965       32    33  78


Q ss_pred             HHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhhccCCceEEe-ccCCCCCccchhhhcccccccc
Q 006854          287 LGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL-APRYASSKLSYFKQQIVGTIFT  365 (628)
Q Consensus       287 l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~-~~~~~~~~~~~~~~~~~~~~~r  365 (628)
                      |.++|++||+|||+||||+ |..|+...            +....+.|.++||++.. .|...     ++. .....+.|
T Consensus        50 l~~aL~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~~-----~~~-~~~~~~~R  110 (411)
T PRK11263         50 LHAALLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRPR-----LLG-MRTNLFRR  110 (411)
T ss_pred             HHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCccc-----ccc-cccccccC
Confidence            9999999999999999995 99987542            35678889999999974 22211     110 01223459


Q ss_pred             CcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHH
Q 006854          366 HHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAA  445 (628)
Q Consensus       366 ~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav  445 (628)
                      +|+|++|||++        +||+||+|++++++..                           .....|+|++++|+||+|
T Consensus       111 ~HrKiiVIDg~--------~a~vGg~N~~~~~~~~---------------------------~g~~~w~D~~v~i~Gp~V  155 (411)
T PRK11263        111 MHRKIVVIDGR--------IAFVGGINYSADHLSD---------------------------YGPEAKQDYAVEVEGPVV  155 (411)
T ss_pred             CcceEEEEcCC--------EEEEcCeEchHhhccc---------------------------cCCCCceEEEEEEECHHH
Confidence            99999999998        9999999999855431                           112469999999999999


Q ss_pred             HHHHHHHHHHHhhhcccchhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeE
Q 006854          446 YDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQ  525 (628)
Q Consensus       446 ~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQ  525 (628)
                      .+++..|.+.|.......         ..|..        .     . .         .+.         ....+...+|
T Consensus       156 ~~l~~~f~~~w~~~~~~~---------~~~~~--------~-----~-~---------~~~---------~~~~g~~~~~  194 (411)
T PRK11263        156 ADIHQFELEALPGQSAAR---------RWWRR--------H-----H-R---------AEE---------NRQPGEAQAL  194 (411)
T ss_pred             HHHHHHHHHHHhhcccch---------hhhcc--------c-----c-c---------Ccc---------cCCCCCeEEE
Confidence            999999999996432110         00000        0     0 0         000         0123455788


Q ss_pred             EeeeccCCccCCCCCCccchhccccccccCcchhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHH
Q 006854          526 IFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPM  605 (628)
Q Consensus       526 v~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~  605 (628)
                      ++.+-|.        .                ....|+++|+.+|.+|++.|||+||||+|+.                 
T Consensus       195 ~v~~~p~--------~----------------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~-----------------  233 (411)
T PRK11263        195 LVWRDNE--------E----------------HRDDIERHYLKALRQARREVIIANAYFFPGY-----------------  233 (411)
T ss_pred             EEECCCc--------c----------------hHHHHHHHHHHHHHHhceEEEEEecCcCCCH-----------------
Confidence            8876321        0                1467999999999999999999999999975                 


Q ss_pred             HHHHHHHHHHHcCCceEEEE
Q 006854          606 ELALKIASKIRANERFAVAR  625 (628)
Q Consensus       606 ~i~~~i~~a~~~~~~~~v~i  625 (628)
                      .|..+|..|.++|++|++++
T Consensus       234 ~l~~aL~~Aa~RGV~V~ii~  253 (411)
T PRK11263        234 RLLRALRNAARRGVRVRLIL  253 (411)
T ss_pred             HHHHHHHHHHHCCCEEEEEe
Confidence            69999999999999999986

>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]

Probab=99.94  E-value=1.4e-25  Score=247.10  Aligned_cols=259  Identities=23%  Similarity=0.307  Sum_probs=189.9

Q ss_pred             CCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHH
Q 006854          209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG  288 (628)
Q Consensus       209 ~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~  288 (628)
                      ..++.++++.+|                    .+.|.++.++|++|+++|++++|++..       +.    .|  ..+.
T Consensus        57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~~~-------d~----~~--~~i~  103 (438)
T COG1502          57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIWQD-------DE----LG--REIL  103 (438)
T ss_pred             CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEEeC-------Ch----hH--HHHH
Confidence            678889999987                    689999999999999999999999865       22    33  7999


Q ss_pred             HHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhhccCCc-eEEe-ccCCCCCccchhhhccccccccC
Q 006854          289 ELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSV-NCVL-APRYASSKLSYFKQQIVGTIFTH  366 (628)
Q Consensus       289 ~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv-~~~~-~~~~~~~~~~~~~~~~~~~~~r~  366 (628)
                      ++|.++|++||+||+|+ |..|+...           ........++++++ .+.. .+..+..      ......+.|+
T Consensus       104 ~~l~~~a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~r~  165 (438)
T COG1502         104 DALIEAAKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASPRP------LRFRRLNRRL  165 (438)
T ss_pred             HHHHHHHHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCccccc------chhhhhhccc
Confidence            99999999999999995 99987331           13567788889999 5543 2222210      0134568899


Q ss_pred             cceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHH
Q 006854          367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY  446 (628)
Q Consensus       367 HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~  446 (628)
                      |+|++|||+.        ++|+||+|++++++...                          ...++|+|++++++||+|.
T Consensus       166 H~K~~viD~~--------i~~vGg~N~~d~y~~~~--------------------------~~~~~~~D~~~~~~g~~v~  211 (438)
T COG1502         166 HRKIVVIDGK--------VAFVGGANIGDEYFHKD--------------------------KGLGYWRDLHVRITGPAVA  211 (438)
T ss_pred             cceEEEEcCC--------EEEecCcccchhhhccC--------------------------cCcccceeeeEEEECHHHH
Confidence            9999999998        99999999999776431                          1234899999999999999


Q ss_pred             HHHHHHHHHHhhhcccchhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEE
Q 006854          447 DVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQI  526 (628)
Q Consensus       447 ~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv  526 (628)
                      ++...|.++|+.......              .+.   ...    ...         .+..  ..    .+......+|+
T Consensus       212 ~l~~~f~~~w~~~~~~~~--------------~~~---~~~----~~~---------~~~~--~~----~~~~~~~~~~~  255 (438)
T COG1502         212 DLARLFIQDWNLESGSSK--------------PLL---ALV----RPP---------LQSL--SL----LPVGRGSTVQV  255 (438)
T ss_pred             HHHHHHHHHhhhccCcCc--------------ccc---ccc----ccc---------cccc--cc----cccccCcceEE
Confidence            999999999998744310              000   000    000         0000  00    01112233788


Q ss_pred             eeeccCCccCCCCCCccchhccccccccCcchhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHH
Q 006854          527 FRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPME  606 (628)
Q Consensus       527 ~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~  606 (628)
                      +.+.|.   ...+.                 ....+.+.|+.+|.+|+++|+|++|||+|+.                 +
T Consensus       256 ~~~~P~---~~~~~-----------------~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~-----------------~  298 (438)
T COG1502         256 LSSGPD---KGLGS-----------------ELIELNRLLLKAINSARESILIATPYFVPDR-----------------E  298 (438)
T ss_pred             EecCCc---cccch-----------------hhhhHHHHHHHHHHhhceEEEEEcCCcCCCH-----------------H
Confidence            888542   11110                 0112559999999999999999999999997                 7


Q ss_pred             HHHHHHHHHHcCCceEEEE
Q 006854          607 LALKIASKIRANERFAVAR  625 (628)
Q Consensus       607 i~~~i~~a~~~~~~~~v~i  625 (628)
                      +..+|..|.++|.+++|++
T Consensus       299 ~~~al~~a~~~Gv~V~ii~  317 (438)
T COG1502         299 LLAALKAAARRGVDVRIII  317 (438)
T ss_pred             HHHHHHHHHhcCCEEEEEe
Confidence            9999999999999999886

>PHA03003 palmytilated EEV membrane glycoprotein; Provisional

Probab=99.94  E-value=6.6e-26  Score=244.18  Aligned_cols=244  Identities=16%  Similarity=0.162  Sum_probs=161.9

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~  320 (628)
                      -.+|++++++|++||++|+|++|+|.-     +++.    .|  ..|.++|++||+|||+||||+ |..|+         
T Consensus        30 ~~~~~~l~~~I~~Ak~~I~i~~yi~~~-----~~d~----~g--~~i~~aL~~aa~rGV~Vril~-D~~~~---------   88 (369)
T PHA03003         30 MSTYECFDEIISQAKKYIYIASFCCNL-----RSTP----EG--RLILDKLKEAAESGVKVTILV-DEQSG---------   88 (369)
T ss_pred             CCHHHHHHHHHHhhhhEEEEEEEEecc-----cCCc----hH--HHHHHHHHHhccCCCeEEEEe-cCCCC---------
Confidence            368999999999999999999998421     2233    44  899999999999999999995 97653         


Q ss_pred             CcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCC
Q 006854          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (628)
Q Consensus       321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~  400 (628)
                             ....+.|+++||++.....  ..        + +....+|+|++||||+        +||+||+||+++++..
T Consensus        89 -------~~~~~~L~~~Gv~v~~~~~--~~--------~-~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~~~~~~  142 (369)
T PHA03003         89 -------DKDEEELQSSNINYIKVDI--GK--------L-NNVGVLLGSFWVSDDR--------RCYIGNASLTGGSIST  142 (369)
T ss_pred             -------CccHHHHHHcCCEEEEEec--cc--------c-CCCCceeeeEEEEcCc--------EEEEecCccCCcccCc
Confidence                   2345678889999873211  10        0 0012348899999999        9999999999955432


Q ss_pred             CCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccch
Q 006854          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYL  480 (628)
Q Consensus       401 ~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~  480 (628)
                       .                         ...+.|+|.     ||+|.+|+..|.+.|..+++..                +
T Consensus       143 -~-------------------------~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~----------------~  175 (369)
T PHA03003        143 -I-------------------------KTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKS----------------V  175 (369)
T ss_pred             -c-------------------------ccceeEecC-----cHHHHHHHHHHHHHHHhcCCCC----------------c
Confidence             1                         223579994     9999999999999998775432                0


Q ss_pred             hhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCcchhh
Q 006854          481 IKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDK  560 (628)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~  560 (628)
                      .  .+..    ...        ..|...+..    ..  .....+++.+.|..   ..+.                 ...
T Consensus       176 ~--~~~~----~~~--------~~~~~~~~~----~~--~~~~~~~~~s~P~~---~~~~-----------------~~~  215 (369)
T PHA03003        176 F--NRLC----CAC--------CLPVSTKYH----IN--NPIGGVFFSDSPEH---LLGY-----------------SRT  215 (369)
T ss_pred             c--cccc----ccc--------CCccccccc----cc--CCCcceEEecCChH---HcCC-----------------CCC
Confidence            0  0000    000        001000000    00  00112344443211   0000                 023


Q ss_pred             HHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHH-HcCCceEEEE
Q 006854          561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKI-RANERFAVAR  625 (628)
Q Consensus       561 ~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~-~~~~~~~v~i  625 (628)
                      .++++|+.+|.+||++|+|+++||+|....   ++    ......+|.++|.+|+ ++|++||+++
T Consensus       216 ~~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~---d~----~~~~~~~i~~AL~~AAa~RGV~VRILv  274 (369)
T PHA03003        216 LDADVVLHKIKSAKKSIDLELLSLVPVIRE---DD----KTTYWPDIYNALIRAAINRGVKVRLLV  274 (369)
T ss_pred             cCHHHHHHHHHHHhhEEEEEEeccccEEee---CC----CCccHHHHHHHHHHHHHcCCCEEEEEE
Confidence            578999999999999999999999986311   11    1233468999999985 9999999986

>PRK09428 pssA phosphatidylserine synthase; Provisional

Probab=99.94  E-value=3.3e-25  Score=242.80  Aligned_cols=268  Identities=15%  Similarity=0.150  Sum_probs=174.7

Q ss_pred             CCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHH
Q 006854          209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG  288 (628)
Q Consensus       209 ~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~  288 (628)
                      ..++.++++.+|                    .++|++|+++|++|+++|+|++|+|..       |+    .|  ..|.
T Consensus        22 ~~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~~-------D~----~g--~~il   68 (451)
T PRK09428         22 QSPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLED-------DE----AG--REIL   68 (451)
T ss_pred             cCcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEecC-------Cc----hH--HHHH
Confidence            457789999997                    689999999999999999999999865       33    44  8999


Q ss_pred             HHHHHHhh--cCCEEEEEEecCCCccC-cccccCCCcccCChHHHHhhhccC--CceEEeccCCCCCccchhhhcccccc
Q 006854          289 ELLKYKSE--EGVRVLLLVWDDKTSHD-KLGVKTPGVMATHDEETKKFFKHS--SVNCVLAPRYASSKLSYFKQQIVGTI  363 (628)
Q Consensus       289 ~~L~~aA~--rGV~VrILvwD~~gs~~-~~~~~~~~~~~~~~~~~~~~l~~~--gv~~~~~~~~~~~~~~~~~~~~~~~~  363 (628)
                      ++|.+|++  +||+|+||+ |...... ..+...    ......+.+.++++  |+++.+.. .|..        ....+
T Consensus        69 ~AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~----~~~~~~~~~~l~~~~~gv~v~~f~-~p~~--------~~e~~  134 (451)
T PRK09428         69 DALYQAKQQNPELDIKVLV-DWHRAQRGLIGAAA----SNTNADWYCEMAQEYPGVDIPVYG-VPVN--------TREAL  134 (451)
T ss_pred             HHHHHHHhcCCCcEEEEEE-EcccccccccccCC----CCcCHHHHHHHHHhCCCceEEEcC-Cccc--------cchhh
Confidence            99999854  899999996 9852111 000000    00135566667654  58887431 1211        12356


Q ss_pred             ccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH
Q 006854          364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP  443 (628)
Q Consensus       364 ~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp  443 (628)
                      .++|+|++|||++        |+|+| +||++.|+...                          ...  ..|..++|+||
T Consensus       135 gr~HrKi~IiD~~--------v~ysG-aNi~d~Yl~~~--------------------------~~~--r~Dry~~i~g~  177 (451)
T PRK09428        135 GVLHLKGFIIDDT--------VLYSG-ASLNNVYLHQH--------------------------DKY--RYDRYHLIRNA  177 (451)
T ss_pred             hhceeeEEEECCC--------EEEec-ccccHHHhcCC--------------------------ccc--CcceEEEEeCc
Confidence            7899999999998        99987 89999655320                          111  23778889999


Q ss_pred             HHHHHHHHHHHHHhhhcccchhhhhhcccc-ccccc--chhh-ccccccccCccccccCCCccccCCCCcccccccCCCC
Q 006854          444 AAYDVLINFEQRWRKATKLTELTFKFKRVS-HWRDD--YLIK-IGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDP  519 (628)
Q Consensus       444 av~~l~~~F~~rW~~~~~~~~~~~~~~~~~-~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  519 (628)
                      ++.++...|.++|..++...      .+.. .|...  .+.. ...+...+..        ....++          ...
T Consensus       178 ~la~~~~~fi~~~~~~~~~v------~~l~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~----------~~~  233 (451)
T PRK09428        178 ELADSMVNFIQQNLLNSPAV------NRLDQPNRPKTKEIKNDIRQFRQRLRD--------AAYQFQ----------GQA  233 (451)
T ss_pred             hHHHHHHHHHHHHhhccCcc------ccccccccccchhhHHHHHHHHHHHhh--------hccCcc----------ccc
Confidence            99999999999998765421      0000 00000  0000 0000000000        000000          001


Q ss_pred             CCeeeEEeeeccCCccCCCCCCccchhccccccccCcchhhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCC
Q 006854          520 ENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGA  599 (628)
Q Consensus       520 ~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~  599 (628)
                      +...+++.+..+.++                        ...+...+..+|.+|++.|+|+||||+|+.           
T Consensus       234 ~~~~~~v~p~~g~g~------------------------~~~l~~~~~~li~~A~~~i~I~TPYF~p~~-----------  278 (451)
T PRK09428        234 NNDELSVTPLVGLGK------------------------KNLLNKTIFHLMASAEQKLTICTPYFNLPA-----------  278 (451)
T ss_pred             CCCCeEEeeeeccCC------------------------chHHHHHHHHHHhccCcEEEEEeCCcCCCH-----------
Confidence            122345554432111                        146889999999999999999999999996           


Q ss_pred             CChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          600 DNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       600 ~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                            .+..+|.+|.++|.+++|++
T Consensus       279 ------~l~~~L~~a~~rGv~V~Ii~  298 (451)
T PRK09428        279 ------ILVRNIIRLLRRGKKVEIIV  298 (451)
T ss_pred             ------HHHHHHHHHHhcCCcEEEEc
Confidence                  69999999999999998876

>PHA02820 phospholipase-D-like protein; Provisional

Probab=99.93  E-value=9.6e-25  Score=238.33  Aligned_cols=251  Identities=14%  Similarity=0.109  Sum_probs=163.9

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~  320 (628)
                      ..+|+.+.+.|.+|+++|+|++|.|.|+      +...-+.|  ..|.++|++||+|||+||||+ |..+.         
T Consensus        25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~~------d~~~~~~G--~~i~~aL~~aA~rGV~VRIL~-d~~~~---------   86 (424)
T PHA02820         25 LSTFNFWREILSNTTKTLDISSFYWSLS------DEVGTNFG--TMILNEIIQLPKRGVRVRIAV-NKSNK---------   86 (424)
T ss_pred             CCHHHHHHHHHHhhCcEEEEEeEEEecC------ccccchhH--HHHHHHHHHHHHCCCEEEEEE-CCCCC---------
Confidence            3578999999999999999999998752      11000123  789999999999999999995 86532         


Q ss_pred             CcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCC
Q 006854          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (628)
Q Consensus       321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~  400 (628)
                            .....+.|+++||++.....  ..          ..+.++|+|++|||++        ++|+||+|+.+ |+..
T Consensus        87 ------~~~~~~~L~~aGv~v~~~~~--~~----------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~  139 (424)
T PHA02820         87 ------PLKDVELLQMAGVEVRYIDI--TN----------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT  139 (424)
T ss_pred             ------chhhHHHHHhCCCEEEEEec--CC----------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh
Confidence                  12334678889999874221  10          1235799999999998        99999999977 4322


Q ss_pred             CCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeE--eCHHHHHHHHHHHHHHhhhcccchhhhhhccccccccc
Q 006854          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL--DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD  478 (628)
Q Consensus       401 ~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l--~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~  478 (628)
                                                     ..+|+++.+  +||+|.+|+..|..+|+.+++..  +      ..|.  
T Consensus       140 -------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~--~------~~~~--  178 (424)
T PHA02820        140 -------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNL--P------YNWK--  178 (424)
T ss_pred             -------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCC--C------Cccc--
Confidence                                           124677777  79999999999999998775321  0      0010  


Q ss_pred             chhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCcch
Q 006854          479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI  558 (628)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  558 (628)
                           ..+    +.          .++...|..    ....+....|++.+.|..   ..+                 ..
T Consensus       179 -----~~~----~~----------~~~~~~p~~----~~~~~~~~~~~~sssP~~---~~~-----------------~~  215 (424)
T PHA02820        179 -----NFY----PL----------YYNTDHPLS----LNVSGVPHSVFIASAPQQ---LCT-----------------ME  215 (424)
T ss_pred             -----ccc----cc----------ccccCCCcc----cccCCccceEEEeCCChh---hcC-----------------CC
Confidence                 000    00          011110000    011122234555553211   000                 01


Q ss_pred             hhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHH-HHHcCCceEEEEE
Q 006854          559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIAS-KIRANERFAVARR  626 (628)
Q Consensus       559 e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~-a~~~~~~~~v~i~  626 (628)
                      ....+++|+.+|.+|+++|||+++||+|+...   + +.  .+.-=.+|.++|.+ |+++|++||++|=
T Consensus       216 r~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~~~---~-~~--~~~yw~~i~~AL~~AA~~RGV~VriLvp  278 (424)
T PHA02820        216 RTNDLTALLSCIRNASKFVYVSVMNFIPIIYS---K-AG--KILFWPYIEDELRRAAIDRKVSVKLLIS  278 (424)
T ss_pred             CCchHHHHHHHHHHHhhEEEEEEccccceeec---c-CC--cccchHHHHHHHHHHHHhCCCEEEEEEe
Confidence            13468999999999999999999999998310   0 00  11111379999986 6679999999874

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.88  E-value=8.4e-22  Score=187.96  Aligned_cols=157  Identities=50%  Similarity=0.808  Sum_probs=130.3

Q ss_pred             eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCe
Q 006854           12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA   91 (628)
Q Consensus        12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~   91 (628)
                      ..++||+|.|+|++|++|++||..+.++++++.+...|.....   ..+.  +.       .....+++||||+|.+++.
T Consensus         2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~--~~-------~~~~~g~sDPYv~V~l~~~   69 (158)
T cd04015           2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTL---KRPS--SH-------RHVGKITSDPYATVDLAGA   69 (158)
T ss_pred             ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhccccc---cccc--cc-------ccCCCCCcCeEEEEEECCe
Confidence            4789999999999999999999888888888876544332210   0000  00       0112346999999999987


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCc
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA  171 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g  171 (628)
                      +..||++++++.||+|||+|.|.+.++.+.|.|+|||++.+++++||++.+|++++..+...+.|++|.+..+++.+..|
T Consensus        70 ~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~  149 (158)
T cd04015          70 RVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGA  149 (158)
T ss_pred             EeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCC
Confidence            77899999999999999999999988888899999999998889999999999999988889999999888788888889


Q ss_pred             eEEEEEEEe
Q 006854          172 SIQLELKFT  180 (628)
Q Consensus       172 ~i~l~l~y~  180 (628)
                      +|+|+++|.
T Consensus       150 ~l~v~~~f~  158 (158)
T cd04015         150 KIRVSLQFT  158 (158)
T ss_pred             EEEEEEEEC
Confidence            999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.82  E-value=1e-19  Score=165.66  Aligned_cols=117  Identities=23%  Similarity=0.491  Sum_probs=101.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT   96 (628)
                      |+|.|+|++|++|+..+ .+.                                          +||||++.++..+ .||
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~------------------------------------------sDPYv~i~lg~~~-~kT   37 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTR------------------------------------------MDPYCRIRVGHAV-YET   37 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCC------------------------------------------CCceEEEEECCEE-EEe
Confidence            79999999999887654 443                                          9999999998866 599


Q ss_pred             ccccC-CCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEecccc-ccccCceeEEEEEccCCCCCCCCCCceE
Q 006854           97 RVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAH-TIATGELISRWYDIIAPSGSPPKPGASI  173 (628)
Q Consensus        97 ~v~~~-~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~-~l~~~~~~~~w~~L~~~~~~~~~~~g~i  173 (628)
                      ++..+ +.||+|||+|.|.+.+....|.|+|||+|.++ |++||.+.+++. .+..++..+.||+|....++  ...|+|
T Consensus        38 ~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~--~~~g~i  115 (121)
T cd04016          38 PTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE--DKEGMI  115 (121)
T ss_pred             EEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC--CCceEE
Confidence            99876 79999999999999887778999999999998 899999999995 67788888999999654433  466999


Q ss_pred             EEEEEE
Q 006854          174 QLELKF  179 (628)
Q Consensus       174 ~l~l~y  179 (628)
                      +|+|+|
T Consensus       116 ~l~l~y  121 (121)
T cd04016         116 NLVFSY  121 (121)
T ss_pred             EEEEeC
Confidence            999997

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=1.4e-18  Score=158.02  Aligned_cols=120  Identities=26%  Similarity=0.388  Sum_probs=107.1

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~   97 (628)
                      +|.|+|++|++|+..+..+.                                          +||||++.+.+....+|+
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~~~kT~   38 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGT------------------------------------------SDPYVKFKYGGKTVYKSK   38 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCC------------------------------------------CCCeEEEEECCEEEEEee
Confidence            48999999999998776554                                          999999999887778999


Q ss_pred             cccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEEE
Q 006854           98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE  176 (628)
Q Consensus        98 v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l~  176 (628)
                      +++++.||.|||+|.|.+......|.|+|||++.++ +++||.+.+++.++..+...+.|++|.+..+  .+..|+|+|.
T Consensus        39 ~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~  116 (121)
T cd04042          39 TIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLV  116 (121)
T ss_pred             eccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEE
Confidence            999999999999999999877788999999999996 9999999999999999888999999965543  3567999999


Q ss_pred             EEEee
Q 006854          177 LKFTP  181 (628)
Q Consensus       177 l~y~p  181 (628)
                      ++|.|
T Consensus       117 ~~~~~  121 (121)
T cd04042         117 VTLTP  121 (121)
T ss_pred             EEECC
Confidence            99986

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.78  E-value=1.5e-18  Score=159.15  Aligned_cols=117  Identities=21%  Similarity=0.493  Sum_probs=100.8

Q ss_pred             EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 006854           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV   98 (628)
Q Consensus        19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v   98 (628)
                      +.|+|++|++|++++..+.                                          +||||++.+++.+ .||++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~------------------------------------------~dpYv~v~l~~~~-~kT~v   37 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGT------------------------------------------NDAYVIIQLGKEK-YSTSV   37 (126)
T ss_pred             CEEEEEECcCCcCCCCCcC------------------------------------------CCceEEEEECCee-eeeee
Confidence            5799999999998776554                                          9999999998755 69999


Q ss_pred             ccCCCCCeEeeEEEEEecC------CCceEEEEEEEcCCCC-CeeeEEEeccccccc--cCceeEEEEEccCCCCCCCCC
Q 006854           99 LKNSQEPVWNEHFNIPLAH------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA--TGELISRWYDIIAPSGSPPKP  169 (628)
Q Consensus        99 ~~~~~~P~wne~f~~~~~~------~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~--~~~~~~~w~~L~~~~~~~~~~  169 (628)
                      ++++.||+|||+|.|.+..      ....|.|+|||++.++ +++||.+.|+++++.  .+.....||+|....++..+.
T Consensus        38 ~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~  117 (126)
T cd08682          38 KEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKE  117 (126)
T ss_pred             ecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccc
Confidence            9999999999999999877      3567999999999987 999999999999988  567788999996555555567


Q ss_pred             CceEEEEEE
Q 006854          170 GASIQLELK  178 (628)
Q Consensus       170 ~g~i~l~l~  178 (628)
                      .|+|+|+++
T Consensus       118 ~Gei~l~~~  126 (126)
T cd08682         118 RGEIEVDIQ  126 (126)
T ss_pred             cceEEEEeC
Confidence            899999873

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=3.7e-18  Score=156.53  Aligned_cols=115  Identities=23%  Similarity=0.360  Sum_probs=101.1

Q ss_pred             EEEEEEEEeeC---CCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854           18 DLDLKIIRARR---LPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (628)
Q Consensus        18 ~L~v~I~~a~~---L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~   94 (628)
                      .|+|+|++|++   |+.++..+.                                          +||||+|.+++++ .
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~------------------------------------------sDPYv~i~~g~~~-~   37 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGS------------------------------------------TDAYCVAKYGPKW-V   37 (126)
T ss_pred             CeEEEEEEeECCccccccccCCC------------------------------------------CCeeEEEEECCEE-e
Confidence            38999999999   666655543                                          9999999998875 5


Q ss_pred             eeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCC-------CCeeeEEEeccccccccCceeEEEEEccCCCCCCC
Q 006854           95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP  167 (628)
Q Consensus        95 kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~-------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~  167 (628)
                      ||++++++.||+|||+|.|.+..+...|+|+|||++.+       ++++||++.+++..+..+.....||+|....+++.
T Consensus        38 rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~  117 (126)
T cd08379          38 RTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGV  117 (126)
T ss_pred             EcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCc
Confidence            99999999999999999999988778899999999887       69999999999999999999999999987666667


Q ss_pred             CCCceEEE
Q 006854          168 KPGASIQL  175 (628)
Q Consensus       168 ~~~g~i~l  175 (628)
                      +..|+|++
T Consensus       118 ~~~g~l~~  125 (126)
T cd08379         118 KKMGELEC  125 (126)
T ss_pred             cCCcEEEe
Confidence            78898875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.76  E-value=8.1e-18  Score=153.45  Aligned_cols=99  Identities=25%  Similarity=0.442  Sum_probs=87.5

Q ss_pred             CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEE
Q 006854           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD  158 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~  158 (628)
                      +||||++.+.....++|++++++.||.|||+|.|.++.....|.|.|||++.++ +++||.+.++++++..+...+.||+
T Consensus        22 sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~  101 (121)
T cd08401          22 RDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFP  101 (121)
T ss_pred             cCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEE
Confidence            899999999877678999999999999999999999876678999999999987 8999999999999998888899999


Q ss_pred             ccCCCCCCCCCCceEEEEEEE
Q 006854          159 IIAPSGSPPKPGASIQLELKF  179 (628)
Q Consensus       159 L~~~~~~~~~~~g~i~l~l~y  179 (628)
                      |. +..+..+..|+|+|+++|
T Consensus       102 L~-~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401         102 LQ-PVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EE-ccCCCCcccEEEEEEEEC
Confidence            94 444444467999999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.76  E-value=1.9e-17  Score=152.00  Aligned_cols=102  Identities=20%  Similarity=0.399  Sum_probs=87.2

Q ss_pred             CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCCC-ceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEE
Q 006854           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY  157 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~  157 (628)
                      +||||++.+++....||+++ ++.||.|||+|.|.+..+. ..++|.|+|++.++ +++||.+.+||.++..+...+.||
T Consensus        22 ~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~  100 (126)
T cd08400          22 PHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWY  100 (126)
T ss_pred             CCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeE
Confidence            89999999988776799985 5899999999999865543 57899999999887 999999999999999888889999


Q ss_pred             EccCCCCCCCCCCceEEEEEEEeec
Q 006854          158 DIIAPSGSPPKPGASIQLELKFTPC  182 (628)
Q Consensus       158 ~L~~~~~~~~~~~g~i~l~l~y~p~  182 (628)
                      +|.....++.+..|+|+|+|+|.+.
T Consensus       101 ~L~~~~~~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400         101 PLSSASPLKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             EcccCCCCCCCcCcEEEEEEEEEcc
Confidence            9965443345677999999999873

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.76  E-value=1.7e-17  Score=155.53  Aligned_cols=125  Identities=24%  Similarity=0.483  Sum_probs=109.9

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~   94 (628)
                      +...|.|.|++|++||.+                                               .+|||+|.|++..++
T Consensus         9 ~~~sL~v~V~EAk~Lp~~-----------------------------------------------~~~Y~~i~Ld~~~va   41 (146)
T cd04013           9 TENSLKLWIIEAKGLPPK-----------------------------------------------KRYYCELCLDKTLYA   41 (146)
T ss_pred             EEEEEEEEEEEccCCCCc-----------------------------------------------CCceEEEEECCEEEE
Confidence            457899999999999863                                               579999999999999


Q ss_pred             eeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcC-CC----CCeeeEEEeccccccccCceeEEEEEccCCCCCC---
Q 006854           95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD-VF----GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP---  166 (628)
Q Consensus        95 kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d-~~----~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~---  166 (628)
                      ||+++.++.||.|+|+|.|...++.+.|+|.|+..+ ..    ++++||.+.||+.++..+...++||+|....+.+   
T Consensus        42 RT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~  121 (146)
T cd04013          42 RTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSG  121 (146)
T ss_pred             EEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccc
Confidence            999999999999999999998888888999997543 33    4799999999999999999999999998887775   


Q ss_pred             ----CCCCceEEEEEEEeecCCCC
Q 006854          167 ----PKPGASIQLELKFTPCDKNP  186 (628)
Q Consensus       167 ----~~~~g~i~l~l~y~p~~~~~  186 (628)
                          ....++|+++++|.+....|
T Consensus       122 ~~~~~~~~~~lrik~rf~~~~~lP  145 (146)
T cd04013         122 GKEGKGESPSIRIKARYQSTRVLP  145 (146)
T ss_pred             cccccCCCCEEEEEEEEEEeeeCC
Confidence                56678999999999987665

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.74  E-value=3.5e-17  Score=150.07  Aligned_cols=105  Identities=20%  Similarity=0.344  Sum_probs=91.2

Q ss_pred             CCcEEEEEECC-eeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEE
Q 006854           80 SDPYVTVVVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY  157 (628)
Q Consensus        80 ~dpyv~v~l~~-~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~  157 (628)
                      +||||++.++. ....+|++++++.||.|||.|.|.+......|.|+|||.+..+ +++||.+.+++.++..+.....|+
T Consensus        18 ~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~   97 (126)
T cd08678          18 SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIF   97 (126)
T ss_pred             cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEE
Confidence            99999999974 3457999999999999999999999876788999999999987 999999999999999888888999


Q ss_pred             EccCCCCCCCCCCceEEEEEEEeecCC
Q 006854          158 DIIAPSGSPPKPGASIQLELKFTPCDK  184 (628)
Q Consensus       158 ~L~~~~~~~~~~~g~i~l~l~y~p~~~  184 (628)
                      +|....++..+..|+|.+++.|.+.+.
T Consensus        98 ~L~~~~~~~~~~~G~l~l~~~~~~~~~  124 (126)
T cd08678          98 PLQGRPYEGDSVSGSITVEFLFMEPAE  124 (126)
T ss_pred             EecCCCCCCCCcceEEEEEEEEecccc
Confidence            995443333456899999999988653

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.74  E-value=1.7e-17  Score=150.05  Aligned_cols=116  Identities=26%  Similarity=0.507  Sum_probs=99.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT   96 (628)
                      |.|.|+|++|++|++.+..+.                                          +||||++.+++.. .+|
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~kT   37 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDK------------------------------------------QDPYCVLRIGGVT-KKT   37 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCC------------------------------------------CCceEEEEECCCc-ccc
Confidence            789999999999998776554                                          9999999998744 688


Q ss_pred             ccccC-CCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEE
Q 006854           97 RVLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ  174 (628)
Q Consensus        97 ~v~~~-~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~  174 (628)
                      +++++ +.||.|||.|.|.+..+ ...|.|+|||++..++++||.+.+++.++..+....+|++|.. .+   +..|+|+
T Consensus        38 ~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~---~~~G~i~  113 (118)
T cd08681          38 KTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KG---RYAGEVY  113 (118)
T ss_pred             ccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CC---cEeeEEE
Confidence            88754 79999999999999875 5679999999998779999999999999887777789999953 33   4569999


Q ss_pred             EEEEE
Q 006854          175 LELKF  179 (628)
Q Consensus       175 l~l~y  179 (628)
                      |+|+|
T Consensus       114 l~l~f  118 (118)
T cd08681         114 LELTF  118 (118)
T ss_pred             EEEEC
Confidence            99986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.73  E-value=3e-17  Score=150.68  Aligned_cols=119  Identities=24%  Similarity=0.350  Sum_probs=101.0

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~   97 (628)
                      .|.|+|++|++|++.+..+.                                          +||||++.+++.. .||+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~rT~   37 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGS------------------------------------------SSAYVELDFDGQK-KRTR   37 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEE-ecce
Confidence            48999999999998775554                                          9999999998865 6999


Q ss_pred             cccCCCCCeEeeEEEEEecCCC----ceEEEEEEEcCCC--CCeeeEEEeccccccc-cCceeEEEEEccCCCCCCCCCC
Q 006854           98 VLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVF--GAQIIGTAAIPAHTIA-TGELISRWYDIIAPSGSPPKPG  170 (628)
Q Consensus        98 v~~~~~~P~wne~f~~~~~~~~----~~l~i~v~d~d~~--~~~~iG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~~  170 (628)
                      +++++.||.|||.|.|.+..+.    ..|.|+|||.+.+  ++++||++.++++++. .++....||+|. ..+...+..
T Consensus        38 v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~-~~~~~~~~~  116 (127)
T cd04022          38 TKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE-KRGLFSRVR  116 (127)
T ss_pred             eEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEee-eCCCCCCcc
Confidence            9999999999999999988642    5799999999887  4899999999999988 567778999995 344444568


Q ss_pred             ceEEEEEEEe
Q 006854          171 ASIQLELKFT  180 (628)
Q Consensus       171 g~i~l~l~y~  180 (628)
                      |+|+|++.++
T Consensus       117 G~l~l~~~~~  126 (127)
T cd04022         117 GEIGLKVYIT  126 (127)
T ss_pred             EEEEEEEEEc
Confidence            9999999875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.73  E-value=5.4e-17  Score=153.53  Aligned_cols=122  Identities=27%  Similarity=0.404  Sum_probs=103.7

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~   97 (628)
                      .|.|+|++|++|++++..+.                                          +||||++.+++. ..+|+
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~------------------------------------------sDPYV~v~l~~~-~~kTk   37 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRV------------------------------------------PEVFVKAQLGNQ-VLRTR   37 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCC------------------------------------------CCeEEEEEECCE-EeeeE
Confidence            38999999999998876665                                          999999999984 46999


Q ss_pred             cccC-CCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccC----ceeEEEEEccCCCC-----C
Q 006854           98 VLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG-----S  165 (628)
Q Consensus        98 v~~~-~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~----~~~~~w~~L~~~~~-----~  165 (628)
                      +..+ +.||.|||+|.|.+..+ .+.|.|+|+|.+..+ +++||.+.++|.++..+    ....+||+|....+     +
T Consensus        38 ~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k  117 (150)
T cd04019          38 PSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKK  117 (150)
T ss_pred             eccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccc
Confidence            9877 69999999999999765 458999999999876 99999999999998743    45689999976654     4


Q ss_pred             CCCCCceEEEEEEEeec
Q 006854          166 PPKPGASIQLELKFTPC  182 (628)
Q Consensus       166 ~~~~~g~i~l~l~y~p~  182 (628)
                      +.+..|+|+|+++|.+.
T Consensus       118 ~~k~~g~l~l~i~~~~~  134 (150)
T cd04019         118 KRKFASRIHLRLCLDGG  134 (150)
T ss_pred             cCcccccEEEEEEecCc
Confidence            56778999999999864

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.71  E-value=1e-16  Score=146.16  Aligned_cols=98  Identities=24%  Similarity=0.442  Sum_probs=83.9

Q ss_pred             CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCc-----ee
Q 006854           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGE-----LI  153 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~-----~~  153 (628)
                      +||||++.+++. ..||++++++.||+|||+|.|.+... ...|.|+|||++.+++++||.+.++++++....     ..
T Consensus        17 ~Dpyv~v~l~~~-~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~   95 (121)
T cd08378          17 NDPVVEVKLGNY-KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLA   95 (121)
T ss_pred             CCCEEEEEECCc-cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCC
Confidence            899999999875 47999999999999999999998774 667999999999888999999999999987532     35


Q ss_pred             EEEEEccCCCCCCCCCCceEEEEEEEe
Q 006854          154 SRWYDIIAPSGSPPKPGASIQLELKFT  180 (628)
Q Consensus       154 ~~w~~L~~~~~~~~~~~g~i~l~l~y~  180 (628)
                      ..||+|....+  .+..|+|+|+|.|-
T Consensus        96 ~~W~~L~~~~~--~~~~G~i~l~~~~~  120 (121)
T cd08378          96 PQWYRLEDKKG--GRVGGELMLAVWFG  120 (121)
T ss_pred             cceEEccCCCC--CccceEEEEEEEec
Confidence            68999965543  46779999999984

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.71  E-value=7.3e-17  Score=147.35  Aligned_cols=107  Identities=24%  Similarity=0.473  Sum_probs=93.4

Q ss_pred             ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854           10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP   89 (628)
Q Consensus        10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~   89 (628)
                      +.+.|-.+.|.|+|++|++|++++ .+.                                          +||||++.+.
T Consensus         6 ~~l~y~~~~L~V~Vi~A~~L~~~~-~~~------------------------------------------~DpyVkv~l~   42 (122)
T cd08381           6 LSISYKNGTLFVMVMHAKNLPLLD-GSD------------------------------------------PDPYVKTYLL   42 (122)
T ss_pred             EEEEEeCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCCEEEEEEe
Confidence            346677899999999999999887 544                                          9999999996


Q ss_pred             C----eeeeeeccccCCCCCeEeeEEEEEe-cC---CCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           90 Q----ATVARTRVLKNSQEPVWNEHFNIPL-AH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        90 ~----~~~~kT~v~~~~~~P~wne~f~~~~-~~---~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      +    ..+.||++++++.||.|||+|.|.+ +.   ....|.|+|||++.++ +++||++.++|+++..++....||+|
T Consensus        43 ~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          43 PDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             eCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            4    3357999999999999999999997 32   2567999999999988 89999999999999988888999998

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.70  E-value=1.3e-16  Score=147.41  Aligned_cols=120  Identities=22%  Similarity=0.412  Sum_probs=100.8

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCe------
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA------   91 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~------   91 (628)
                      .|+|+|++|++|+.++..+.                                          +||||++.+.+.      
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~------------------------------------------~Dpyv~v~~~~~~~~~~~   38 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGA------------------------------------------SDPYVKISLYDPDGNGEI   38 (133)
T ss_pred             CEEEEEEEeECCCcccCCCC------------------------------------------cCcEEEEEEECCCCCCcc
Confidence            48999999999998776554                                          999999998653      


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCce------eEEEEEccCCCC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAPSG  164 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~------~~~w~~L~~~~~  164 (628)
                      ...+|++++++.||.|||+|.|.+......|.|+|||++.++ +++||.+.+++.++..+..      ...||+|. +..
T Consensus        39 ~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~-~~~  117 (133)
T cd04033          39 DSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLR-PRS  117 (133)
T ss_pred             cceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeee-ecC
Confidence            246999999999999999999999876778999999999987 8999999999999886543      45899995 333


Q ss_pred             CCCCCCceEEEEEEEe
Q 006854          165 SPPKPGASIQLELKFT  180 (628)
Q Consensus       165 ~~~~~~g~i~l~l~y~  180 (628)
                      ...+..|+|+|++.|.
T Consensus       118 ~~~~~~G~l~~~~~~~  133 (133)
T cd04033         118 SKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCcceeEEEEEEeeC
Confidence            3445689999999984

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.70  E-value=2.8e-16  Score=142.11  Aligned_cols=117  Identities=31%  Similarity=0.549  Sum_probs=100.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT   96 (628)
                      |.|.|+|++|++|+.++..+.                                          +||||++.+.+.. .+|
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~~T   37 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGK------------------------------------------SDPFCVLELVNAR-LQT   37 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCC------------------------------------------CCcEEEEEECCEe-eec
Confidence            789999999999998765554                                          9999999998755 699


Q ss_pred             ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 006854           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL  175 (628)
Q Consensus        97 ~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l  175 (628)
                      ++++++.||.|||+|.|.+......+.|+|||++.++ +++||.+.+++.++..+.  ..|++|.... ...+..|+|.|
T Consensus        38 ~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~-~~~~~~G~i~l  114 (119)
T cd08377          38 HTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKK-LRTRAKGSILL  114 (119)
T ss_pred             ceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccC-CCCceeeEEEE
Confidence            9999999999999999999876788999999999876 899999999999987654  5799996443 33446799999


Q ss_pred             EEEE
Q 006854          176 ELKF  179 (628)
Q Consensus       176 ~l~y  179 (628)
                      ++.+
T Consensus       115 ~~~~  118 (119)
T cd08377         115 EMDV  118 (119)
T ss_pred             EEEe
Confidence            9986

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.70  E-value=3.9e-16  Score=140.68  Aligned_cols=113  Identities=26%  Similarity=0.377  Sum_probs=99.2

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~   97 (628)
                      .|+|+|++|++|+..+..+.                                          +||||++.+.+.. .+|+
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~kT~   37 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGL------------------------------------------SDPYVKFRLGNEK-YKSK   37 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCC------------------------------------------CCcEEEEEECCEe-Eecc
Confidence            37899999999998775544                                          8999999998754 7999


Q ss_pred             cccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 006854           98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL  175 (628)
Q Consensus        98 v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l  175 (628)
                      +++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..++....|++|...       .|+|++
T Consensus        38 v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~  110 (116)
T cd08376          38 VCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLL  110 (116)
T ss_pred             cccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEE
Confidence            999999999999999998876 678999999999987 99999999999999988889999999422       399999


Q ss_pred             EEEEe
Q 006854          176 ELKFT  180 (628)
Q Consensus       176 ~l~y~  180 (628)
                      .+.|.
T Consensus       111 ~~~~~  115 (116)
T cd08376         111 LLTLT  115 (116)
T ss_pred             EEEec
Confidence            98875

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.70  E-value=5.8e-17  Score=146.11  Aligned_cols=103  Identities=17%  Similarity=0.303  Sum_probs=88.0

Q ss_pred             eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-
Q 006854           12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-   90 (628)
Q Consensus        12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-   90 (628)
                      -.+..+.|+|+|++|++|+ .  .+.                                          +||||+++|.+ 
T Consensus         9 Y~~~~~~L~V~vikA~~L~-~--~g~------------------------------------------sDPYVKv~L~~~   43 (118)
T cd08677           9 YDKQKAELHVNILEAENIS-V--DAG------------------------------------------CECYISGCVSVS   43 (118)
T ss_pred             EcCcCCEEEEEEEEecCCC-C--CCC------------------------------------------CCeEEEEEEcCC
Confidence            3445789999999999998 2  232                                          89999999965 


Q ss_pred             --eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           91 --ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        91 --~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                        ..+.+|+++++|.||+|||+|.|.++..   ...|.|+|||+|+++ +++||++.++++++..+...++|.+|
T Consensus        44 ~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          44 EGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             cCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence              2456999999999999999999998874   457999999999998 99999999999998777777888764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.70  E-value=2.6e-16  Score=143.37  Aligned_cols=117  Identities=25%  Similarity=0.513  Sum_probs=99.5

Q ss_pred             EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 006854           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV   98 (628)
Q Consensus        19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v   98 (628)
                      |.|+|++|++|++++..+.                                          +||||++.+.+....||++
T Consensus         2 l~v~vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT~v   39 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGS------------------------------------------SDPYCIVKVDNEVIIRTAT   39 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCC------------------------------------------CCceEEEEECCEeeeeeee
Confidence            8899999999998876664                                          9999999998876689999


Q ss_pred             ccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccC-ceeEEEEEccCCCCCCCCCCceEEEE
Q 006854           99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDIIAPSGSPPKPGASIQLE  176 (628)
Q Consensus        99 ~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~~~~~~~~~g~i~l~  176 (628)
                      ++++.||.|||.|.|.+.+....|.|+|||++.++ +++||.+.+++.++..+ ...+.|++|. +.....+..|+|+|+
T Consensus        40 ~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~-~~~~~~~~~G~i~l~  118 (121)
T cd04054          40 VWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLT-EVDPDEEVQGEIHLE  118 (121)
T ss_pred             EcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECe-eeCCCCccccEEEEE
Confidence            99999999999999999877788999999999987 89999999999988753 3468899994 322233456999998


Q ss_pred             EE
Q 006854          177 LK  178 (628)
Q Consensus       177 l~  178 (628)
                      ++
T Consensus       119 ~~  120 (121)
T cd04054         119 LS  120 (121)
T ss_pred             EE
Confidence            75

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.69  E-value=2.9e-16  Score=142.47  Aligned_cols=113  Identities=28%  Similarity=0.540  Sum_probs=96.8

Q ss_pred             EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--eeeeee
Q 006854           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVART   96 (628)
Q Consensus        19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~~~kT   96 (628)
                      |.|+|++|++|+..+..+.                                          +||||++.+.+  ..+.||
T Consensus         2 L~V~vi~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~kT   39 (119)
T cd04036           2 LTVRVLRATNITKGDLLST------------------------------------------PDCYVELWLPTASDEKKRT   39 (119)
T ss_pred             eEEEEEEeeCCCccCCCCC------------------------------------------CCcEEEEEEcCCCCccCcc
Confidence            7899999999998765443                                          99999999864  455799


Q ss_pred             ccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 006854           97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL  175 (628)
Q Consensus        97 ~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l  175 (628)
                      ++++++.||.|||+|.|.+... ...|.|+|||++.+++++||++.+++.++..+.....|++| .+.+     .|+|++
T Consensus        40 ~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L-~~~~-----~g~l~~  113 (119)
T cd04036          40 KTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSL-NPQG-----KEELEV  113 (119)
T ss_pred             ceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEEC-CCCC-----CceEEE
Confidence            9999999999999999998765 34689999999988889999999999999999999999999 3432     488888


Q ss_pred             EEEE
Q 006854          176 ELKF  179 (628)
Q Consensus       176 ~l~y  179 (628)
                      ++.+
T Consensus       114 ~~~~  117 (119)
T cd04036         114 EFLL  117 (119)
T ss_pred             EEEe
Confidence            8764

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.69  E-value=2.6e-16  Score=144.03  Aligned_cols=120  Identities=22%  Similarity=0.421  Sum_probs=100.5

Q ss_pred             eEEEEEEEEeeCCCCCCC--CchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854           17 GDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~   94 (628)
                      |.|.|+|++|++|+..+.  .+.                                          +||||++.++... .
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~   37 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------------------SDPYAILSVGAQR-F   37 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCC------------------------------------------cCCeEEEEECCEE-E
Confidence            789999999999998765  443                                          9999999997654 7


Q ss_pred             eeccccCCCCCeEeeEEEEEecC-CCceEEEEEEEcCCCC-CeeeEEEecccccccc---CceeEEEEEccCCC-CCCCC
Q 006854           95 RTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPS-GSPPK  168 (628)
Q Consensus        95 kT~v~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~---~~~~~~w~~L~~~~-~~~~~  168 (628)
                      +|++++++.||.|||.|.|.+.. ....|.|+|||++.++ +++||.+.+++.++..   ......||+|.... ++...
T Consensus        38 kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~  117 (128)
T cd04024          38 KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV  117 (128)
T ss_pred             ecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCcccc
Confidence            99999999999999999999987 4678999999999886 8999999999999873   34467999996442 23345


Q ss_pred             CCceEEEEEEE
Q 006854          169 PGASIQLELKF  179 (628)
Q Consensus       169 ~~g~i~l~l~y  179 (628)
                      ..|+|+|+++|
T Consensus       118 ~~G~i~l~~~~  128 (128)
T cd04024         118 VSGEIHLQFSW  128 (128)
T ss_pred             ccceEEEEEEC
Confidence            68999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.69  E-value=2.1e-16  Score=148.41  Aligned_cols=108  Identities=20%  Similarity=0.409  Sum_probs=93.2

Q ss_pred             eEeeceEEEEEEEEeeCCCCCC-CCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854           12 VIYLHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ   90 (628)
Q Consensus        12 ~~~~~g~L~v~I~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~   90 (628)
                      +.|..|.|.|+|++|+||++++ ..+.                                          +||||+++|.+
T Consensus        24 l~y~~~~L~V~Vi~ArnL~~~~~~~g~------------------------------------------sDPYVKv~Llp   61 (146)
T cd04028          24 LYDKKGQLEVEVIRARGLVQKPGSKVL------------------------------------------PAPYVKVYLLE   61 (146)
T ss_pred             EEeCCCEEEEEEEEeeCCCcccCCCCC------------------------------------------cCCeEEEEEEC
Confidence            5677899999999999998764 3333                                          89999999965


Q ss_pred             e----eeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEE-EcCCCC-CeeeEEEeccccccccCceeEEEEEccC
Q 006854           91 A----TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA  161 (628)
Q Consensus        91 ~----~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~-d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~  161 (628)
                      .    .+.||++++++.||+|||+|.|.+......|.|+|| |++.++ +++||.+.|+|+.+..+.....||+|..
T Consensus        62 ~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~  138 (146)
T cd04028          62 GKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFP  138 (146)
T ss_pred             CCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCC
Confidence            2    367999999999999999999999866778999999 577776 8999999999999988888899999953

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.69  E-value=2.5e-16  Score=143.26  Aligned_cols=120  Identities=30%  Similarity=0.460  Sum_probs=100.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-eeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR   95 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-~~~~k   95 (628)
                      |.|.|+|++|++|+..+..+.                                         .+||||++.+.+ ....+
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~-----------------------------------------~~dpyv~v~~~~~~~~~k   40 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGG-----------------------------------------TVDPYVTFSISNRRELAR   40 (124)
T ss_pred             eEEEEEEEcccCCCcccccCC-----------------------------------------CCCCeEEEEECCCCcceE
Confidence            789999999999986542221                                         289999999988 56789


Q ss_pred             eccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEE-EEEccCCCCCCCCCCceE
Q 006854           96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR-WYDIIAPSGSPPKPGASI  173 (628)
Q Consensus        96 T~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~-w~~L~~~~~~~~~~~g~i  173 (628)
                      |+++.++.||.|||.|.|.+......|.|+|||.+.++ +++||.+.+++.++..+..... |..+ ...++   ..|+|
T Consensus        41 T~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~-~~~~k---~~G~i  116 (124)
T cd04044          41 TKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNL-LRNGK---PVGEL  116 (124)
T ss_pred             eeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhh-hcCCc---cceEE
Confidence            99999999999999999999866888999999999886 8999999999999997666654 4444 44333   56999


Q ss_pred             EEEEEEee
Q 006854          174 QLELKFTP  181 (628)
Q Consensus       174 ~l~l~y~p  181 (628)
                      +++|+|.|
T Consensus       117 ~~~l~~~p  124 (124)
T cd04044         117 NYDLRFFP  124 (124)
T ss_pred             EEEEEeCC
Confidence            99999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.68  E-value=7.3e-16  Score=142.43  Aligned_cols=127  Identities=23%  Similarity=0.439  Sum_probs=102.4

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~   94 (628)
                      +.|.|.|+|++|++|+..+..+.   ..+                .+ .            -.+++||||++.+++....
T Consensus         2 ~~g~l~V~v~~a~~L~~~d~~~~---~~~----------------~~-~------------~~g~~dpyv~v~~~~~~~~   49 (132)
T cd04014           2 FTGTLKIKICEAVDLKPTDWSTR---HAV----------------PK-K------------GSQLLDPYVSIDVDDTHIG   49 (132)
T ss_pred             cceEEEEEEEEecCCCCCCchhh---hcc----------------cc-c------------CccCcCcEEEEEECCEEEe
Confidence            46899999999999987764321   000                00 0            0123899999999987778


Q ss_pred             eeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEecccccccc--CceeEEEEEccCCCCCCCCCCc
Q 006854           95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT--GELISRWYDIIAPSGSPPKPGA  171 (628)
Q Consensus        95 kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~--~~~~~~w~~L~~~~~~~~~~~g  171 (628)
                      +|++++++.||.|||+|.|.+. ....|.|.|||++.++ +++||.+.++|.++..  +...+.|++|.        +.|
T Consensus        50 kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G  120 (132)
T cd04014          50 KTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQG  120 (132)
T ss_pred             EEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCc
Confidence            9999999999999999999997 4678999999998887 8999999999999887  56778999993        249


Q ss_pred             eEEEEEEEeec
Q 006854          172 SIQLELKFTPC  182 (628)
Q Consensus       172 ~i~l~l~y~p~  182 (628)
                      +|+|+++|...
T Consensus       121 ~l~l~~~~~~~  131 (132)
T cd04014         121 KLHVKIELKGS  131 (132)
T ss_pred             EEEEEEEEecC
Confidence            99999998763

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.68  E-value=2.1e-16  Score=143.77  Aligned_cols=107  Identities=18%  Similarity=0.339  Sum_probs=91.8

Q ss_pred             ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854           10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP   89 (628)
Q Consensus        10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~   89 (628)
                      +...|-++.|.|+|++|++|++++ .+.                                          +||||++++.
T Consensus         5 l~~~~~~~~L~V~Vi~ar~L~~~~-~g~------------------------------------------~dpYVkv~l~   41 (119)
T cd08685           5 LSIEGQNRKLTLHVLEAKGLRSTN-SGT------------------------------------------CNSYVKISLS   41 (119)
T ss_pred             EEEEEcCCEEEEEEEEEECCCCCC-CCC------------------------------------------CCeeEEEEEE
Confidence            346678999999999999999876 443                                          9999999997


Q ss_pred             C----eeeeeeccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC--CeeeEEEeccccccccCceeEEEEEc
Q 006854           90 Q----ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        90 ~----~~~~kT~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~--~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      +    ..+.||++++++.||.|||+|.|.+...  ...|.|+|||++...  +++||.+.||+.++..++...+||.|
T Consensus        42 p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          42 PDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             eCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            5    3356999999999999999999998764  356899999998774  68999999999999988888999986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.67  E-value=6.4e-16  Score=139.95  Aligned_cols=120  Identities=27%  Similarity=0.476  Sum_probs=98.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT   96 (628)
                      |.|.|+|++|++|+..+....                          |.          -.+++||||++.+++ ...+|
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~--------------------------~~----------~~g~~dPyv~v~~~~-~~~kT   43 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVG--------------------------GL----------VKGKSDPYVIVRVGA-QTFKS   43 (121)
T ss_pred             CeEEEEEEEccCCcccccccc--------------------------cC----------CCCCcCCEEEEEECC-EeEEc
Confidence            679999999999997764210                          00          001389999999987 45899


Q ss_pred             ccccCCCCCeEeeEEEEEecC-CCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 006854           97 RVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL  175 (628)
Q Consensus        97 ~v~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l  175 (628)
                      ++++++.||.|||+|.|.+.. ....|.|+|||++..++++||.+.+++.++..+.....||+|...      ..|+|+|
T Consensus        44 ~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~  117 (121)
T cd08391          44 KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHL  117 (121)
T ss_pred             cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEE
Confidence            999999999999999999875 467899999999988889999999999999877778899999432      3499999


Q ss_pred             EEEE
Q 006854          176 ELKF  179 (628)
Q Consensus       176 ~l~y  179 (628)
                      +++|
T Consensus       118 ~~~~  121 (121)
T cd08391         118 KLEW  121 (121)
T ss_pred             EEeC
Confidence            9875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.67  E-value=6.6e-16  Score=140.83  Aligned_cols=118  Identities=26%  Similarity=0.422  Sum_probs=99.3

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~   97 (628)
                      .|.|+|++|++|+.++..+.                                          +||||++.+.+.. .+|+
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~------------------------------------------~DPyv~v~~~~~~-~kT~   37 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGT------------------------------------------SDPFVRVFYNGQT-LETS   37 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCC------------------------------------------cCceEEEEECCEE-Eece
Confidence            48999999999998775554                                          8999999997754 6999


Q ss_pred             cccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCC---CCCCCce
Q 006854           98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS---PPKPGAS  172 (628)
Q Consensus        98 v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~---~~~~~g~  172 (628)
                      +++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+.....||.|.....+   ..+..|.
T Consensus        38 v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~  117 (123)
T cd04025          38 VVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGS  117 (123)
T ss_pred             eecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEE
Confidence            999999999999999998875 467999999999887 89999999999999877777899999643322   3456788


Q ss_pred             EEEEEE
Q 006854          173 IQLELK  178 (628)
Q Consensus       173 i~l~l~  178 (628)
                      |++.|+
T Consensus       118 l~~~~~  123 (123)
T cd04025         118 LRLKVR  123 (123)
T ss_pred             EEEEeC
Confidence            988873

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.66  E-value=1.5e-15  Score=141.42  Aligned_cols=118  Identities=23%  Similarity=0.362  Sum_probs=98.2

Q ss_pred             eeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeee
Q 006854           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV   93 (628)
Q Consensus        14 ~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~   93 (628)
                      ..-|.|.|+|++|++|+.++..+.                                          +||||++.++... 
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~-   48 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGK------------------------------------------SDPYCEVSMGSQE-   48 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEe-
Confidence            345899999999999998776554                                          9999999997754 


Q ss_pred             eeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEecccccccc-----CceeEEEEEccCCCCCC
Q 006854           94 ARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-----GELISRWYDIIAPSGSP  166 (628)
Q Consensus        94 ~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~  166 (628)
                      .+|++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..     ......|..+ .     
T Consensus        49 ~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~-~-----  122 (136)
T cd08375          49 HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL-H-----  122 (136)
T ss_pred             eeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc-c-----
Confidence            7999999999999999999999765 467999999999887 8999999999999885     3344567766 2     


Q ss_pred             CCCCceEEEEEEEe
Q 006854          167 PKPGASIQLELKFT  180 (628)
Q Consensus       167 ~~~~g~i~l~l~y~  180 (628)
                      .+..|+|+|++.+.
T Consensus       123 ~~~~g~i~l~~~~~  136 (136)
T cd08375         123 EVPTGEVVVKLDLQ  136 (136)
T ss_pred             cccceeEEEEEEeC
Confidence            23459999999873

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.66  E-value=6.5e-16  Score=140.51  Aligned_cols=100  Identities=22%  Similarity=0.300  Sum_probs=85.6

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC-----C-e
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-----Q-A   91 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~-----~-~   91 (628)
                      .|+|+|++|++|+.++. |.                                          +||||+|++.     . .
T Consensus         1 kL~V~Vi~A~~L~~~d~-g~------------------------------------------~DPYVkV~l~g~~~~~k~   37 (120)
T cd08395           1 KVTVKVVAANDLKWQTT-GM------------------------------------------FRPFVEVNLIGPHLSDKK   37 (120)
T ss_pred             CEEEEEEECcCCCcccC-CC------------------------------------------CCCEEEEEEecCCCcccc
Confidence            48999999999987652 43                                          8999999983     2 2


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEcc
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~  160 (628)
                      .+.+|+++.++.||+|||+|.|.+...    ...|.|.|+|++..+ +++||++.+|++++..++....|++|.
T Consensus        38 ~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~  111 (120)
T cd08395          38 RKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG  111 (120)
T ss_pred             cEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence            346899999999999999999999753    245899999999887 899999999999999988899999993

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.66  E-value=2.7e-15  Score=137.65  Aligned_cols=122  Identities=17%  Similarity=0.236  Sum_probs=102.3

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeee
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR   95 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~k   95 (628)
                      ...|+|+|++|++|+..+..+.                                          +||||++.+++.. .+
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------------------~dPyv~v~~~~~~-~k   38 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGG------------------------------------------ADPYVIIKCEGES-VR   38 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCC------------------------------------------cCccEEEEECCEE-EE
Confidence            5689999999999998775554                                          9999999998765 69


Q ss_pred             eccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCC-CCCCCCCceEE
Q 006854           96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS-GSPPKPGASIQ  174 (628)
Q Consensus        96 T~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~~~g~i~  174 (628)
                      |++++++.||.|||.|.|.+......|+|+|||++.+++++||.+.+++.++.  .....|++|.... ....+..|+|.
T Consensus        39 T~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~  116 (126)
T cd04046          39 SPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTIS  116 (126)
T ss_pred             eCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEE
Confidence            99999999999999999998888888999999999888999999999998764  3345788885322 23456789999


Q ss_pred             EEEEEeec
Q 006854          175 LELKFTPC  182 (628)
Q Consensus       175 l~l~y~p~  182 (628)
                      +++++.+.
T Consensus       117 ~~~~~~~~  124 (126)
T cd04046         117 VKVTSSDD  124 (126)
T ss_pred             EEEEEccc
Confidence            99987663

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.65  E-value=9.9e-16  Score=139.78  Aligned_cols=104  Identities=33%  Similarity=0.526  Sum_probs=91.6

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT   92 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~   92 (628)
                      ..++|.|+|++|++|+.++..+.                                          +||||++.+.+  ..
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~l~~~~~~   51 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDMGGT------------------------------------------SDPYVKVYLLPDKKK   51 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence            56899999999999998775554                                          89999999864  34


Q ss_pred             eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEcc
Q 006854           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (628)
Q Consensus        93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~  160 (628)
                      +.+|++++++.||.|||+|.|.+...   ...|.|+|||++.++ +++||.+.++++++..+...++|++|.
T Consensus        52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            57999999999999999999998763   457999999999987 899999999999998888899999983

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.65  E-value=1.1e-15  Score=140.19  Aligned_cols=103  Identities=22%  Similarity=0.398  Sum_probs=89.8

Q ss_pred             eceEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC---
Q 006854           15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---   90 (628)
                      ..+.|.|+|++|++|++.+.. +.                                          +||||++++.+   
T Consensus        13 ~~~~L~V~Vi~a~~L~~~~~~~~~------------------------------------------~DpyVkv~l~p~~~   50 (125)
T cd04029          13 KTQSLNVHVKECRNLAYGDEAKKR------------------------------------------SNPYVKTYLLPDKS   50 (125)
T ss_pred             CCCeEEEEEEEecCCCccCCCCCC------------------------------------------CCcEEEEEEEcCCc
Confidence            578899999999999976542 22                                          99999999854   


Q ss_pred             -eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        91 -~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                       ..+.||++++++.||.|||+|.|.+...   ...|.|+|||.+.++ +++||.+.+++..+........|++|
T Consensus        51 ~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          51 RQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             cccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence             3356999999999999999999998763   557999999999988 89999999999999988889999998

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.65  E-value=6.4e-16  Score=141.68  Aligned_cols=102  Identities=23%  Similarity=0.401  Sum_probs=88.5

Q ss_pred             ceEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      .+.|.|+|++|++|++++.. +.                                          +||||++++.+    
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~~g~------------------------------------------~dpyVkv~l~p~~~~   51 (125)
T cd08393          14 LRELHVHVIQCQDLAAADPKKQR------------------------------------------SDPYVKTYLLPDKSN   51 (125)
T ss_pred             CCEEEEEEEEeCCCCCcCCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence            45899999999999987653 33                                          99999999854    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      ..+.||++++++.||+|||+|.|.+...   ...|.|+|||.+.++ +++||.+.++|.++........||+|
T Consensus        52 ~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L  124 (125)
T cd08393          52 RGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL  124 (125)
T ss_pred             cccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence            2346999999999999999999998753   467999999999987 89999999999999877778899998

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.64  E-value=5.5e-16  Score=145.41  Aligned_cols=97  Identities=29%  Similarity=0.566  Sum_probs=88.5

Q ss_pred             eeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeee
Q 006854           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV   93 (628)
Q Consensus        14 ~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~   93 (628)
                      .+.|.|.|+|++|.+|...|..+.                                          +||||.+.+++++ 
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~s------------------------------------------SDPyVVl~lg~q~-   39 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGS------------------------------------------SDPYVVLELGNQK-   39 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccC------------------------------------------CCCeEEEEECCee-
Confidence            467999999999999998877554                                          9999999999977 


Q ss_pred             eeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCcee
Q 006854           94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI  153 (628)
Q Consensus        94 ~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~  153 (628)
                      .||++++++.||+|||.|+|++.++...|+++|||+|.++ ||+||.|.|++..+......
T Consensus        40 lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~  100 (168)
T KOG1030|consen   40 LKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM  100 (168)
T ss_pred             eeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence            5999999999999999999999999999999999999999 99999999999988865433

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.64  E-value=4.2e-15  Score=136.38  Aligned_cols=103  Identities=35%  Similarity=0.593  Sum_probs=90.3

Q ss_pred             CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEE
Q 006854           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR  155 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~  155 (628)
                      +||||++.+...+ .+|++++++.||+|||+|.|.+...   ...|.|+|||++.++ +++||.+.+++.++..+.....
T Consensus        15 ~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~   93 (127)
T cd08373          15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV   93 (127)
T ss_pred             CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence            9999999998765 6999999999999999999998764   577999999999887 8999999999999998888899


Q ss_pred             EEEccCCCCCCCCCCceEEEEEEEeecCCC
Q 006854          156 WYDIIAPSGSPPKPGASIQLELKFTPCDKN  185 (628)
Q Consensus       156 w~~L~~~~~~~~~~~g~i~l~l~y~p~~~~  185 (628)
                      |++|....+++  ..|+|+++++|.|.+..
T Consensus        94 ~~~L~~~~~~~--~~~~l~l~~~~~~~~~~  121 (127)
T cd08373          94 TEPLLDSNGRP--TGATISLEVSYQPPDGA  121 (127)
T ss_pred             EEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence            99997655542  35899999999997654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.63  E-value=1.6e-15  Score=138.46  Aligned_cols=103  Identities=26%  Similarity=0.471  Sum_probs=91.3

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT   92 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~   92 (628)
                      ..|.|.|+|++|++|+.++..+.                                          +||||++.+.+  ..
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~   51 (124)
T cd08387          14 DMGILNVKLIQARNLQPRDFSGT------------------------------------------ADPYCKVRLLPDRSN   51 (124)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCeEEEEEecCCCC
Confidence            45899999999999998776554                                          99999999953  45


Q ss_pred             eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      ..+|++++++.||.|||+|.|.+...   ...|.|+|||.+.++ +++||.+.++++++..++....||+|
T Consensus        52 ~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08387          52 TKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI  122 (124)
T ss_pred             cEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence            67999999999999999999998764   457999999999987 99999999999999988888999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.63  E-value=1.4e-15  Score=140.02  Aligned_cols=102  Identities=23%  Similarity=0.346  Sum_probs=87.6

Q ss_pred             ceEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      .+.|.|+|++|+||++++.. +.                                          +||||++.+.+    
T Consensus        14 ~~~L~V~V~~a~nL~~~d~~~g~------------------------------------------~dpYVkv~llp~~~~   51 (128)
T cd08392          14 TSCLEITIKACRNLAYGDEKKKK------------------------------------------CHPYVKVCLLPDKSH   51 (128)
T ss_pred             CCEEEEEEEecCCCCccCCCCCC------------------------------------------CCeEEEEEEEeCCcc
Confidence            48899999999999987653 43                                          99999999865    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecccccccc---CceeEEEEEc
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDI  159 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~---~~~~~~w~~L  159 (628)
                      ..+.||++++++.||+|||+|.|.+...   ...|.|.|||.+.++ +++||.+.|+|.++..   ++....||+|
T Consensus        52 ~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          52 NSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             cceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            2356999999999999999999998764   468999999999887 8999999999999874   3467789998

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.62  E-value=2.3e-15  Score=141.97  Aligned_cols=83  Identities=22%  Similarity=0.400  Sum_probs=70.7

Q ss_pred             CCcEEEEEECCe----eeeeeccccCCCCCeEeeEEEEEecC----------------CCceEEEEEEEcCCCC-CeeeE
Q 006854           80 SDPYVTVVVPQA----TVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVFG-AQIIG  138 (628)
Q Consensus        80 ~dpyv~v~l~~~----~~~kT~v~~~~~~P~wne~f~~~~~~----------------~~~~l~i~v~d~d~~~-~~~iG  138 (628)
                      +||||+|.+.+.    ...+|++++++.||+|||+|.|.+..                ....|.|+|||++.++ +++||
T Consensus        19 sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG   98 (148)
T cd04010          19 CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLG   98 (148)
T ss_pred             CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeE
Confidence            999999999762    34699999999999999999999851                1246899999999886 99999


Q ss_pred             EEeccccccccC-ceeEEEEEccCC
Q 006854          139 TAAIPAHTIATG-ELISRWYDIIAP  162 (628)
Q Consensus       139 ~~~i~l~~l~~~-~~~~~w~~L~~~  162 (628)
                      ++.|++..+..+ .....||+|...
T Consensus        99 ~v~i~l~~l~~~~~~~~~W~~L~~~  123 (148)
T cd04010          99 EVRIPLRGLDLQAGSHQAWYFLQPR  123 (148)
T ss_pred             EEEEecccccccCCcCcceeecCCc
Confidence            999999999976 567899999544

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.62  E-value=1.8e-15  Score=138.54  Aligned_cols=103  Identities=23%  Similarity=0.465  Sum_probs=88.2

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-e--
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-A--   91 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-~--   91 (628)
                      ..+.|.|+|++|+||++++..+.                                          +||||+++|.+ .  
T Consensus        12 ~~~~L~V~V~~arnL~~~~~~~~------------------------------------------~dpyVKv~Llp~~~~   49 (124)
T cd08680          12 GDSSLVISVEQLRNLSALSIPEN------------------------------------------SKVYVRVALLPCSSS   49 (124)
T ss_pred             CCCEEEEEEeEecCCcccccCCC------------------------------------------CCeEEEEEEccCCCC
Confidence            45689999999999998765443                                          89999999865 1  


Q ss_pred             --eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccC-ceeEEEEEc
Q 006854           92 --TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDI  159 (628)
Q Consensus        92 --~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~-~~~~~w~~L  159 (628)
                        ...||++++++.||+|||+|.|+++..   ...|.|+||+.+.++ +++||.+.|+|+++... +....||+|
T Consensus        50 ~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          50 TSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             CCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence              367999999999999999999998774   568999999999987 89999999999999644 457889876

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.62  E-value=2.3e-15  Score=134.83  Aligned_cols=100  Identities=32%  Similarity=0.540  Sum_probs=87.2

Q ss_pred             EEEEEEEeeCCCCCCC-CchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854           19 LDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (628)
Q Consensus        19 L~v~I~~a~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~   97 (628)
                      |.|+|++|++|+.++. .+.                                          +||||++.+++ .+.||+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~-~~~kT~   37 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDL------------------------------------------TDAFVEVKFGS-TTYKTD   37 (110)
T ss_pred             CEEEEEEEECCCccccCCCC------------------------------------------CCceEEEEECC-eeEecc
Confidence            6899999999998763 332                                          89999999988 557999


Q ss_pred             cccCCCCCeE-eeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecccccccc---CceeEEEEEccC
Q 006854           98 VLKNSQEPVW-NEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIA  161 (628)
Q Consensus        98 v~~~~~~P~w-ne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~---~~~~~~w~~L~~  161 (628)
                      +++++.||.| ||.|.|.+...   ...|.|+|||++.++ +++||++.+++.++..   +...++||+|++
T Consensus        38 v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          38 VVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             eecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            9999999999 99999998874   368999999999987 8999999999999986   456789999964

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.61  E-value=5.7e-15  Score=131.06  Aligned_cols=97  Identities=27%  Similarity=0.507  Sum_probs=85.1

Q ss_pred             EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 006854           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV   98 (628)
Q Consensus        19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v   98 (628)
                      |.|+|++|++|+..+..+.                                          +||||++.+++ ...+|++
T Consensus         2 L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~-~~~kT~v   38 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKE------------------------------------------PSPYVELTVGK-TTQKSKV   38 (105)
T ss_pred             EEEEEeeecCCCCcccCCC------------------------------------------CCcEEEEEECC-EEEeCcc
Confidence            8899999999997664443                                          99999999988 4579999


Q ss_pred             ccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCc--eeEEEEEcc
Q 006854           99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGE--LISRWYDII  160 (628)
Q Consensus        99 ~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~--~~~~w~~L~  160 (628)
                      ++++.||.|||.|.|.+..+ ...|.|+|+|.+.  +++||++.++|.++....  ..+.||+|.
T Consensus        39 ~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~  101 (105)
T cd04050          39 KERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLD  101 (105)
T ss_pred             ccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecC
Confidence            99999999999999999885 5679999999887  889999999999988543  678999994

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.61  E-value=7.3e-15  Score=133.87  Aligned_cols=97  Identities=22%  Similarity=0.336  Sum_probs=84.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT   96 (628)
                      +.|.|+|++||+|+.++                                             +.||||+|.+++.+ .+|
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---------------------------------------------~~dPYV~Ik~g~~k-~kT   35 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---------------------------------------------KFNTYVTLKVQNVK-STT   35 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---------------------------------------------CCCCeEEEEECCEE-eEe
Confidence            58999999999997432                                             27899999998855 699


Q ss_pred             ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCcee--EEEEEcc
Q 006854           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELI--SRWYDII  160 (628)
Q Consensus        97 ~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~--~~w~~L~  160 (628)
                      ++.+.+ ||.|||.|.|.+......|.|+|||++.++|++||.+.|+|+++..++..  ..||+|.
T Consensus        36 ~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~  100 (127)
T cd08394          36 IAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD  100 (127)
T ss_pred             eECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence            999884 99999999999988877899999999988899999999999999866544  7899995

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.61  E-value=5.8e-15  Score=135.13  Aligned_cols=106  Identities=26%  Similarity=0.531  Sum_probs=91.0

Q ss_pred             eEeec--eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854           12 VIYLH--GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP   89 (628)
Q Consensus        12 ~~~~~--g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~   89 (628)
                      +.|-.  +.|.|+|++|++|+.++..+.                                          +||||++.+.
T Consensus         9 l~y~~~~~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~   46 (127)
T cd04030           9 IRYSSQRQKLIVTVHKCRNLPPCDSSDI------------------------------------------PDPYVRLYLL   46 (127)
T ss_pred             EEEeCCCCEEEEEEEEEECCCCccCCCC------------------------------------------CCceEEEEEE
Confidence            44444  889999999999998775544                                          9999999986


Q ss_pred             C----eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCC--C-CeeeEEEeccccccccCceeEEEEEc
Q 006854           90 Q----ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF--G-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        90 ~----~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~--~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      +    ..+.||++++++.||.|||+|.|.+...   ...|.|.|||.+.+  + +++||.+.+++.++..++...+||+|
T Consensus        47 ~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  126 (127)
T cd04030          47 PDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL  126 (127)
T ss_pred             cCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence            4    3457999999999999999999998654   46799999999875  4 89999999999999888888999998

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.60  E-value=1.1e-14  Score=135.27  Aligned_cols=119  Identities=19%  Similarity=0.353  Sum_probs=96.4

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~   97 (628)
                      .|+|+|++|++|+.++..+.                                          +||||++.+.... .+|+
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~kT~   38 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGL------------------------------------------SDPFARVSFLNQS-QETE   38 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCC------------------------------------------CCCEEEEEECCee-eEee
Confidence            58999999999998876664                                          9999999998754 6999


Q ss_pred             cccCCCCCeEeeEEEEEecCC----------CceEEEEEEEcCCCC-CeeeEEEec-ccccccc---CceeEEEEEccCC
Q 006854           98 VLKNSQEPVWNEHFNIPLAHP----------LSNLEIQVKDDDVFG-AQIIGTAAI-PAHTIAT---GELISRWYDIIAP  162 (628)
Q Consensus        98 v~~~~~~P~wne~f~~~~~~~----------~~~l~i~v~d~d~~~-~~~iG~~~i-~l~~l~~---~~~~~~w~~L~~~  162 (628)
                      +++++.||.|||.|.|.+...          ...|.|+|||.+.++ +++||++.+ ++..+..   +....+|++|. .
T Consensus        39 v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~  117 (135)
T cd04017          39 VIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-K  117 (135)
T ss_pred             eEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-c
Confidence            999999999999999974321          246899999999987 899999986 5544442   45678999994 3


Q ss_pred             CCCCCCCCceEEEEEEEeecC
Q 006854          163 SGSPPKPGASIQLELKFTPCD  183 (628)
Q Consensus       163 ~~~~~~~~g~i~l~l~y~p~~  183 (628)
                      .+   ...|+|+|++++.+.+
T Consensus       118 ~~---~~~Geil~~~~~~~~~  135 (135)
T cd04017         118 GG---QSAGELLAAFELIEVT  135 (135)
T ss_pred             CC---CchhheeEEeEEEEeC
Confidence            33   3579999999998853

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.60  E-value=1.5e-14  Score=132.24  Aligned_cols=114  Identities=24%  Similarity=0.394  Sum_probs=95.7

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--eeeee
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVAR   95 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~~~k   95 (628)
                      .|+|+|++|++|+..+..+.                                          +||||++.+.+  ....|
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~k   39 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGL------------------------------------------SDPYVTLVDTNGKRRIAK   39 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCC------------------------------------------CCceEEEEECCCCeeeec
Confidence            58999999999998765554                                          89999999865  34579


Q ss_pred             eccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEecccccccc---CceeEEEEEccCCCCCCCCCC
Q 006854           96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPSGSPPKPG  170 (628)
Q Consensus        96 T~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~~~  170 (628)
                      |++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||++.+++.++..   +.....|++|. +       .
T Consensus        40 T~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-~-------~  111 (126)
T cd04043          40 TRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-T-------Q  111 (126)
T ss_pred             ccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC-C-------C
Confidence            99999999999999999999875 567999999999986 8999999999987653   34567899993 2       3


Q ss_pred             ceEEEEEEEee
Q 006854          171 ASIQLELKFTP  181 (628)
Q Consensus       171 g~i~l~l~y~p  181 (628)
                      |+|+|.+.+.-
T Consensus       112 g~i~l~~~~~~  122 (126)
T cd04043         112 GRLLLRVSMEG  122 (126)
T ss_pred             CeEEEEEEEee
Confidence            88999988754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.60  E-value=8.9e-15  Score=134.42  Aligned_cols=114  Identities=25%  Similarity=0.493  Sum_probs=95.2

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~   97 (628)
                      .|.|+|++|++|+..+..+.                                          +||||++.+++. ..+|+
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~~~~~-~~kT~   38 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGT------------------------------------------SDPYVTVQVGKT-KKRTK   38 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCC------------------------------------------cCcEEEEEECCE-eeecc
Confidence            68999999999998776554                                          899999999765 47999


Q ss_pred             cccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCC------------CCeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854           98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (628)
Q Consensus        98 v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~------------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~  165 (628)
                      +++++.||.|||.|.|.+..+...|.|+|||+|..            .+++||.+.+++.++..  ....||.|. +.+.
T Consensus        39 ~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~-~~~~  115 (127)
T cd04027          39 TIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLE-KRTD  115 (127)
T ss_pred             eecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECc-cCCC
Confidence            99999999999999999877677899999999852            38999999999998753  356899995 4344


Q ss_pred             CCCCCceEEEEE
Q 006854          166 PPKPGASIQLEL  177 (628)
Q Consensus       166 ~~~~~g~i~l~l  177 (628)
                      .....|+|+|++
T Consensus       116 ~~~~~G~i~~~~  127 (127)
T cd04027         116 KSAVSGAIRLHI  127 (127)
T ss_pred             CCcEeEEEEEEC
Confidence            455789999875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.60  E-value=6.4e-15  Score=133.98  Aligned_cols=103  Identities=29%  Similarity=0.521  Sum_probs=88.9

Q ss_pred             eceEEEEEEEEeeCCCCCC-CCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC---
Q 006854           15 LHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---   90 (628)
                      ..+.|.|+|++|++|+.++ ..+.                                          +||||++.+.+   
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~   49 (123)
T cd08521          12 KTGSLEVHIKECRNLAYADEKKKR------------------------------------------SNPYVKVYLLPDKS   49 (123)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCC------------------------------------------CCcEEEEEEecCCC
Confidence            5689999999999999876 3332                                          99999999854   


Q ss_pred             -eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        91 -~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                       ..+.+|++++++.||.|||+|.|.+...   ...|.|+|||.+.++ +++||.+.+++.++..+.....||+|
T Consensus        50 ~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          50 KQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             cCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence             1457999999999999999999998763   457999999999887 89999999999999888888999987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.60  E-value=8.9e-15  Score=133.65  Aligned_cols=116  Identities=25%  Similarity=0.376  Sum_probs=95.2

Q ss_pred             EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 006854           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV   98 (628)
Q Consensus        19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v   98 (628)
                      |+|+|++|++|+.++..+.                                          +||||++.+.+...++|++
T Consensus         2 l~v~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~kT~v   39 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRL------------------------------------------PDPFAVITVDGGQTHSTDV   39 (123)
T ss_pred             eEEEEEEecCCCccCCCCC------------------------------------------CCcEEEEEECCccceEccE
Confidence            7899999999998765554                                          9999999997666689999


Q ss_pred             ccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC---CeeeEEEeccccccccCc-eeEEEEEccCCCCC-CCCCCceE
Q 006854           99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS-PPKPGASI  173 (628)
Q Consensus        99 ~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~---~~~iG~~~i~l~~l~~~~-~~~~w~~L~~~~~~-~~~~~g~i  173 (628)
                      ++++.||.|||+|.|.+.. ...|.|+|||++.++   +++||.+.+++.++.... ....|++|...... .....|+|
T Consensus        40 ~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v  118 (123)
T cd08382          40 AKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKI  118 (123)
T ss_pred             EcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEE
Confidence            9999999999999999976 778999999999886   479999999999987433 34679999444321 23446888


Q ss_pred             EEEE
Q 006854          174 QLEL  177 (628)
Q Consensus       174 ~l~l  177 (628)
                      .+++
T Consensus       119 ~~~~  122 (123)
T cd08382         119 VVSL  122 (123)
T ss_pred             EEEe
Confidence            8876

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.60  E-value=9.2e-16  Score=142.91  Aligned_cols=114  Identities=22%  Similarity=0.324  Sum_probs=93.8

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|+||+.++....                                        .++||||++++.+    
T Consensus        13 ~~~~L~V~V~karnL~~~d~~~~----------------------------------------~~~DpYVKv~l~~~~~k   52 (138)
T cd08407          13 AANRLLVVVIKAKNLHSDQLKLL----------------------------------------LGIDVSVKVTLKHQNAK   52 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCC----------------------------------------CCCCeEEEEEEEcCCcc
Confidence            46889999999999998763211                                        1289999999865    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  166 (628)
                      ..+.||++++++.||+|||.|.|.++..   ...|.|+|||.|.++ +++||.+.+++..  .|+..++|..|+...+++
T Consensus        53 ~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~  130 (138)
T cd08407          53 LKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQ  130 (138)
T ss_pred             cceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCc
Confidence            2356999999999999999999998874   467999999999998 9999999999974  677788999998776665


Q ss_pred             CCCC
Q 006854          167 PKPG  170 (628)
Q Consensus       167 ~~~~  170 (628)
                      ...+
T Consensus       131 va~W  134 (138)
T cd08407         131 IAMW  134 (138)
T ss_pred             hhEE
Confidence            5433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.59  E-value=1e-14  Score=132.96  Aligned_cols=101  Identities=28%  Similarity=0.441  Sum_probs=85.2

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~   91 (628)
                      .+.|.|+|++|++|+.++..+.                                          +||||++.+.+    .
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~   52 (125)
T cd04031          15 TSQLIVTVLQARDLPPRDDGSL------------------------------------------RNPYVKVYLLPDRSEK   52 (125)
T ss_pred             CCEEEEEEEEecCCCCcCCCCC------------------------------------------CCCEEEEEEccCCCcc
Confidence            4789999999999998775554                                          99999999865    3


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecC----CCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      .+.||++++++.||.|||+|.|.+..    ....|.|+|||.+.++ +++||.+.++|.+.. ......||+|
T Consensus        53 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L  124 (125)
T cd04031          53 SKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL  124 (125)
T ss_pred             ccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence            45799999999999999999998644    2467999999999887 899999999999833 3345689998

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.59  E-value=8.7e-15  Score=134.04  Aligned_cols=105  Identities=22%  Similarity=0.367  Sum_probs=90.0

Q ss_pred             eEeec--eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854           12 VIYLH--GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP   89 (628)
Q Consensus        12 ~~~~~--g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~   89 (628)
                      +.|-.  +.|.|+|++|+||++++..+.                                          +||||++.+.
T Consensus         9 l~Y~~~~~~L~V~Vi~a~nL~~~~~~~~------------------------------------------~d~yVk~~ll   46 (124)
T cd08389           9 FEYDPSARKLTVTVIRAQDIPTKDRGGA------------------------------------------SSWQVHLVLL   46 (124)
T ss_pred             EEECCCCCEEEEEEEEecCCCchhcCCC------------------------------------------CCcEEEEEEc
Confidence            34444  789999999999998775443                                          8999999885


Q ss_pred             C--eeeeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           90 Q--ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        90 ~--~~~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      +  ..+.||+++++ .||+|||+|.|+ +...   ...|.|+|||++.++ +++||.+.|+|+++..+.....|++|
T Consensus        47 p~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L  122 (124)
T cd08389          47 PSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL  122 (124)
T ss_pred             cCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence            5  44679999988 999999999998 5543   567999999999988 99999999999999988889999998

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.59  E-value=1.3e-15  Score=141.67  Aligned_cols=111  Identities=23%  Similarity=0.354  Sum_probs=91.6

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++++.+    
T Consensus        13 ~~~~L~V~Vi~A~nL~~~~~~g~------------------------------------------~DpyVkv~l~~~~~~   50 (136)
T cd08406          13 TAERLTVVVVKARNLVWDNGKTT------------------------------------------ADPFVKVYLLQDGRK   50 (136)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCcc
Confidence            35789999999999998775554                                          99999999854    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  166 (628)
                      ..+.||++++++.||+|||+|.|.++..   ...|.|+|||+|.++ +++||.+.|+..  ..|+..++|..|+...+++
T Consensus        51 ~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~  128 (136)
T cd08406          51 ISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKP  128 (136)
T ss_pred             ccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCe
Confidence            1245899999999999999999998763   567999999999887 999999999776  4567778899987776665


Q ss_pred             CCC
Q 006854          167 PKP  169 (628)
Q Consensus       167 ~~~  169 (628)
                      ...
T Consensus       129 v~~  131 (136)
T cd08406         129 VAM  131 (136)
T ss_pred             eeE
Confidence            433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.58  E-value=7.5e-15  Score=134.15  Aligned_cols=113  Identities=25%  Similarity=0.428  Sum_probs=94.5

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~   97 (628)
                      +|+|+|++|++|+..+..+.                                          +||||++.+.+....+|+
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~------------------------------------------~dpYv~v~~~~~~~~~T~   38 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGK------------------------------------------MKVYAVVWIDPSHKQSTP   38 (125)
T ss_pred             CEEEEEEEcccCCCCCcccC------------------------------------------CceEEEEEECCCcccccc
Confidence            58999999999997765443                                          999999999884557999


Q ss_pred             ccc-CCCCCeEeeEEEEEecCC-----CceEEEEEEEcCCCC-CeeeEEEeccccccccCce-----eEEEEEccCCCCC
Q 006854           98 VLK-NSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----ISRWYDIIAPSGS  165 (628)
Q Consensus        98 v~~-~~~~P~wne~f~~~~~~~-----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~  165 (628)
                      +.. .+.||.|||.|.|.+...     ...|.|+|||++.++ +++||.+.+++.++..+..     ...||+|..+.|+
T Consensus        39 ~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~  118 (125)
T cd04051          39 VDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK  118 (125)
T ss_pred             cccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC
Confidence            986 489999999999999887     578999999999866 8999999999999986554     3689999776654


Q ss_pred             CCCCCceEEE
Q 006854          166 PPKPGASIQL  175 (628)
Q Consensus       166 ~~~~~g~i~l  175 (628)
                         ..|.|++
T Consensus       119 ---~~G~~~~  125 (125)
T cd04051         119 ---PQGVLNF  125 (125)
T ss_pred             ---cCeEEeC
Confidence               5588764

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd00138 PLDc Phospholipase D

Probab=99.58  E-value=2.3e-14  Score=138.27  Aligned_cols=145  Identities=23%  Similarity=0.272  Sum_probs=109.7

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~  320 (628)
                      .++++.++++|.+|+++|+|+.|.|++..    ..     .  ...|.++|.+|+++||+|+||+ |.......      
T Consensus        20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----~~-----~--~~~l~~~L~~a~~rGv~V~il~-~~~~~~~~------   81 (176)
T cd00138          20 RSDLDALLEAISNAKKSIYIASFYLSPLI----TE-----Y--GPVILDALLAAARRGVKVRILV-DEWSNTDL------   81 (176)
T ss_pred             chHHHHHHHHHHhhheEEEEEEeEecccc----cc-----c--chHHHHHHHHHHHCCCEEEEEE-cccccCCc------
Confidence            57899999999999999999999987632    01     1  2689999999999999999997 55432210      


Q ss_pred             CcccCChHHHHhhhccC---CceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCC
Q 006854          321 GVMATHDEETKKFFKHS---SVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR  397 (628)
Q Consensus       321 ~~~~~~~~~~~~~l~~~---gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r  397 (628)
                          .......+.+...   |+.+...+...            ....++|+|++|||++        ++++||.|+++.+
T Consensus        82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~------------~~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~  137 (176)
T cd00138          82 ----KISSAYLDSLRALLDIGVRVFLIRTDK------------TYGGVLHTKLVIVDDE--------TAYIGSANLDGRS  137 (176)
T ss_pred             ----hHHHHHHHHHHHhhcCceEEEEEcCCc------------ccccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence                0123445555544   78876422110            0235889999999998        9999999999955


Q ss_pred             CCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH--HHHHHHHHHHHHHhhh
Q 006854          398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKA  459 (628)
Q Consensus       398 ~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp--av~~l~~~F~~rW~~~  459 (628)
                      |.                                .++|..+.+++|  +|+++.+.|...|+..
T Consensus       138 ~~--------------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~  169 (176)
T cd00138         138 LT--------------------------------LNSEVGVVIYDPASLAADLKASLERDWNST  169 (176)
T ss_pred             hh--------------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence            42                                457999999999  7999999999999874

Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.58  E-value=2.4e-14  Score=128.94  Aligned_cols=96  Identities=26%  Similarity=0.479  Sum_probs=75.8

Q ss_pred             CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEE
Q 006854           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR  155 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~  155 (628)
                      +||||++.+.+...++|+++++ .||.|||+|.|.+...   ...|.|.+||.+... +..+|.+.  +..+..+...+.
T Consensus        18 ~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~--l~~~~~~~~~~~   94 (117)
T cd08383          18 RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVA--LSKLDLGQGKDE   94 (117)
T ss_pred             CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEE--ecCcCCCCccee
Confidence            9999999998877789999999 9999999999999874   356788888887665 56666654  555555777899


Q ss_pred             EEEccCCCCCCCCCCceEEEEEEE
Q 006854          156 WYDIIAPSGSPPKPGASIQLELKF  179 (628)
Q Consensus       156 w~~L~~~~~~~~~~~g~i~l~l~y  179 (628)
                      ||+|...++ .....|+|+|+++|
T Consensus        95 w~~L~~~~~-~~~~~G~l~l~~~~  117 (117)
T cd08383          95 WFPLTPVDP-DSEVQGSVRLRARY  117 (117)
T ss_pred             EEECccCCC-CCCcCceEEEEEEC
Confidence            999954333 33467999999986

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.58  E-value=1.2e-14  Score=132.28  Aligned_cols=104  Identities=27%  Similarity=0.457  Sum_probs=92.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT   96 (628)
                      |.|.|+|++|++|+..+..+.                                          +||||++.+.+....+|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT   38 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGK------------------------------------------IDPYVRVLVNGIVKGRT   38 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCC------------------------------------------cCCEEEEEECCEEeece
Confidence            689999999999998765554                                          99999999987777899


Q ss_pred             ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCC
Q 006854           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS  163 (628)
Q Consensus        97 ~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  163 (628)
                      ++++++.||.|||.|.|.+......|.|+|||++.++ +++||.+.+++.++..+ ..+.||.|++.+
T Consensus        39 ~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~  105 (120)
T cd04045          39 VTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE  105 (120)
T ss_pred             eEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence            9999999999999999999887789999999999988 89999999999999866 668899987654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.58  E-value=6e-15  Score=132.28  Aligned_cols=98  Identities=28%  Similarity=0.465  Sum_probs=84.7

Q ss_pred             eEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--eee
Q 006854           17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV   93 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~~   93 (628)
                      |.|.|+|++|++|+.++.. +.                                          +||||++.+.+  ...
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~~~~~~   38 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGS------------------------------------------SDPYVTASFAKFGKPL   38 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCC------------------------------------------CCccEEEEEccCCCcc
Confidence            7899999999999987755 43                                          99999999854  345


Q ss_pred             eeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        94 ~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      .+|++++++.||.|||.|.|.+...    ...|.|+|||++.++ +++||.+.+++.++.   ...+|+++
T Consensus        39 ~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~---~~~~~~~~  106 (111)
T cd04041          39 YSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI---EDRNWMGR  106 (111)
T ss_pred             EeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh---cCCCCCcc
Confidence            7999999999999999999987664    467999999999987 899999999999988   34578887

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.58  E-value=2.9e-14  Score=135.04  Aligned_cols=99  Identities=20%  Similarity=0.417  Sum_probs=83.6

Q ss_pred             CCcEEEEEE--C--CeeeeeeccccCCCCCeEeeEEEEEecCC---------CceEEEEEEEcCCC-C-CeeeEEEeccc
Q 006854           80 SDPYVTVVV--P--QATVARTRVLKNSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVF-G-AQIIGTAAIPA  144 (628)
Q Consensus        80 ~dpyv~v~l--~--~~~~~kT~v~~~~~~P~wne~f~~~~~~~---------~~~l~i~v~d~d~~-~-~~~iG~~~i~l  144 (628)
                      +||||++++  +  ...+.||+++++|.||+|||+|.|.+...         ...|.|+|||.+.+ + |++||++.++|
T Consensus        25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L  104 (155)
T cd08690          25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL  104 (155)
T ss_pred             CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence            999999997  2  24568999999999999999999999765         34699999999886 4 99999999999


Q ss_pred             cccccCceeEEEEEccCCCCCCCCCCceEEEEEEEee
Q 006854          145 HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP  181 (628)
Q Consensus       145 ~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p  181 (628)
                      ..+........|++|.... +  ..+|+|+++++...
T Consensus       105 ~~l~~~~~~~~~~~L~~~~-k--~~Gg~l~v~ir~r~  138 (155)
T cd08690         105 EPLETKCEIHESVDLMDGR-K--ATGGKLEVKVRLRE  138 (155)
T ss_pred             ccccccCcceEEEEhhhCC-C--CcCCEEEEEEEecC
Confidence            9998887788899996433 2  46799999999654

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.58  E-value=1.7e-14  Score=132.89  Aligned_cols=102  Identities=27%  Similarity=0.394  Sum_probs=85.7

Q ss_pred             ceEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854           16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT   92 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~   92 (628)
                      .++|.|+|++|++|+.++.. +.                                          +||||++.+.+  ..
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~------------------------------------------~DpyV~v~l~~~~~~   52 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGT------------------------------------------SDPYVKLQLLPEKEH   52 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCC------------------------------------------cCCEEEEEEeCCcCc
Confidence            56899999999999987654 32                                          89999999864  34


Q ss_pred             eeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccC--ceeEEEEEc
Q 006854           93 VARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDI  159 (628)
Q Consensus        93 ~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~--~~~~~w~~L  159 (628)
                      +.||++++++.||.|||+|.|. ++..   ...|.|+|||++.++ +++||.+.++|.++...  +....|.+|
T Consensus        53 ~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~  126 (128)
T cd08388          53 KVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI  126 (128)
T ss_pred             eeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence            5699999999999999999994 4432   346999999999887 99999999999999755  678889988

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>PRK12452 cardiolipin synthetase; Reviewed

Probab=99.56  E-value=7.1e-15  Score=164.72  Aligned_cols=155  Identities=15%  Similarity=0.152  Sum_probs=120.9

Q ss_pred             CCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEE
Q 006854          226 ILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV  305 (628)
Q Consensus       226 ~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILv  305 (628)
                      ...++++.+||+...+.++..++++|.+|+++|+|++..|-|       +         ..+.++|+.||+|||+||||+
T Consensus       328 ~~~~q~~~sgp~~~~~~i~~~~l~~I~~A~~~I~I~tpYf~p-------d---------~~l~~aL~~Aa~rGV~Vrii~  391 (509)
T PRK12452        328 EGAVQIVASGPSSDDKSIRNTLLAVMGSAKKSIWIATPYFIP-------D---------QETLTLLRLSAISGIDVRILY  391 (509)
T ss_pred             CeEEEEEeCCCCchhHHHHHHHHHHHHHhhhEEEEECCccCC-------C---------HHHHHHHHHHHHcCCEEEEEc
Confidence            345777888888877899999999999999999999865543       1         479999999999999999997


Q ss_pred             ecCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceE
Q 006854          306 WDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT  385 (628)
Q Consensus       306 wD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~v  385 (628)
                       +..+.....        ........+.|.++||++..   +..              ...|+|++|||++        +
T Consensus       392 -p~~~D~~~~--------~~a~~~~~~~L~~aGv~I~~---y~~--------------~~lHaK~~ivD~~--------~  437 (509)
T PRK12452        392 -PGKSDSIIS--------DQASQSYFTPLLKAGASIYS---YKD--------------GFMHAKIVLVDDK--------I  437 (509)
T ss_pred             -CCCCChHHH--------HHHHHHHHHHHHHcCCEEEE---ecC--------------CCeeeeEEEECCC--------E
Confidence             665432110        01134456778889999873   221              1359999999998        9


Q ss_pred             EEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcc
Q 006854          386 AFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK  461 (628)
Q Consensus       386 afvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~  461 (628)
                      |++||+|+....+.                               ..|.+..+...|+.|.+++..|.++|..+..
T Consensus       438 a~vGS~Nld~RS~~-------------------------------~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~~  482 (509)
T PRK12452        438 ATIGTANMDVRSFE-------------------------------LNYEIISVLYESETVHDIKRDFEDDFKHSTE  482 (509)
T ss_pred             EEEeCcccCHhHhh-------------------------------hhhhccEEEECHHHHHHHHHHHHHHHHhCeE
Confidence            99999999884331                               2567889999999999999999999987643

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.56  E-value=2.1e-14  Score=131.08  Aligned_cols=102  Identities=30%  Similarity=0.468  Sum_probs=88.4

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--eee
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV   93 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~~   93 (628)
                      .++|.|+|++|++|+.++..+.                                          +||||++.+.+  ...
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~   52 (125)
T cd08386          15 ESTLTLKILKAVELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKHK   52 (125)
T ss_pred             CCEEEEEEEEecCCCCccCCCC------------------------------------------CCceEEEEECCCCCcc
Confidence            6789999999999998765554                                          89999999843  445


Q ss_pred             eeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        94 ~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      .+|++++++.||.|||+|.|.+.+.    ...|.|+|||++.++ +++||.+.++++++..+.....|+.|
T Consensus        53 ~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l  123 (125)
T cd08386          53 LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL  123 (125)
T ss_pred             eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence            7999999999999999999975332    356999999999887 89999999999999988889999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.56  E-value=3.8e-15  Score=137.67  Aligned_cols=109  Identities=28%  Similarity=0.423  Sum_probs=91.9

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+    
T Consensus        11 ~~~~L~V~Vi~a~~L~~~d~~~~------------------------------------------~DpyV~v~l~~~~~~   48 (133)
T cd08384          11 QRRGLIVGIIRCVNLAAMDANGY------------------------------------------SDPFVKLYLKPDAGK   48 (133)
T ss_pred             CCCEEEEEEEEEcCCCCcCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence            45899999999999998776554                                          99999999854    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  166 (628)
                      ..+.+|++++++.||.|||+|.|.+...   ...|.|+|||.+..+ +++||.+.+++..  .++...+|++|+...+++
T Consensus        49 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~  126 (133)
T cd08384          49 KSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKK  126 (133)
T ss_pred             cCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCC
Confidence            3357999999999999999999998764   457999999999887 8999999999985  466678999997776654


Q ss_pred             C
Q 006854          167 P  167 (628)
Q Consensus       167 ~  167 (628)
                      .
T Consensus       127 ~  127 (133)
T cd08384         127 I  127 (133)
T ss_pred             h
Confidence            4

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=2.3e-14  Score=156.76  Aligned_cols=132  Identities=27%  Similarity=0.375  Sum_probs=109.8

Q ss_pred             EeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--
Q 006854           13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--   90 (628)
Q Consensus        13 ~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--   90 (628)
                      .+....|.|+|++|++|+.++..+                                          ++||||++++.+  
T Consensus       163 d~~~~~L~V~V~qa~~Lp~~d~~g------------------------------------------~sdpyVK~~llPdk  200 (421)
T KOG1028|consen  163 DFELNLLTVRVIQAHDLPAKDRGG------------------------------------------TSDPYVKVYLLPDK  200 (421)
T ss_pred             cccCCEEEEEEEEecCCCcccCCC------------------------------------------CCCCeeEEEEcCCC
Confidence            345677999999999999887322                                          299999999987  


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  166 (628)
                      ..+.+|++.++++||.|||+|.|.++..   ...|.++|||.|+|+ +++||.+.++|..+........|.+|.......
T Consensus       201 ~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~  280 (421)
T KOG1028|consen  201 KGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS  280 (421)
T ss_pred             CCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCc
Confidence            3467999999999999999999997774   567999999999999 999999999999988777778899996543333


Q ss_pred             CCCCceEEEEEEEeecCCCC
Q 006854          167 PKPGASIQLELKFTPCDKNP  186 (628)
Q Consensus       167 ~~~~g~i~l~l~y~p~~~~~  186 (628)
                      ....|+|.++|+|.|++..-
T Consensus       281 ~~~~gel~~sL~Y~p~~g~l  300 (421)
T KOG1028|consen  281 EELAGELLLSLCYLPTAGRL  300 (421)
T ss_pred             ccccceEEEEEEeecCCCeE
Confidence            33448999999999985433

>TIGR03705 poly_P_kin polyphosphate kinase 1

Probab=99.55  E-value=1.7e-13  Score=156.16  Aligned_cols=203  Identities=15%  Similarity=0.122  Sum_probs=150.9

Q ss_pred             chHHHHHHHHHhccc-----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEec---CCCccC
Q 006854          242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD---DKTSHD  313 (628)
Q Consensus       242 ~~f~~l~~aI~~Ak~-----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD---~~gs~~  313 (628)
                      +-|..+++.|++|.+     +|.++.|.+..                ...|.++|.+||++|++|++|+ +   -.+.  
T Consensus       339 ~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~ii~aL~~Aa~~Gk~V~v~v-eLkArfde--  399 (672)
T TIGR03705       339 ESFDPVVEFLRQAAEDPDVLAIKQTLYRTSK----------------DSPIIDALIEAAENGKEVTVVV-ELKARFDE--  399 (672)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEEEEecC----------------CcHHHHHHHHHHHcCCEEEEEE-Eehhhccc--
Confidence            568899999999997     99999998743                1589999999999999999998 6   2221  


Q ss_pred             cccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccC
Q 006854          314 KLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDL  393 (628)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni  393 (628)
                                 ..+-.+.+.|+++|++|++  ..              ..++.|+|+++||.+.+| .-+..+++|.-|.
T Consensus       400 -----------~~ni~wa~~le~aG~~viy--g~--------------~~~k~H~K~~li~r~~~~-~~~~y~~igTgN~  451 (672)
T TIGR03705       400 -----------EANIRWARRLEEAGVHVVY--GV--------------VGLKTHAKLALVVRREGG-ELRRYVHLGTGNY  451 (672)
T ss_pred             -----------hhhHHHHHHHHHcCCEEEE--cC--------------CCeeeeeEEEEEEEeeCC-ceEEEEEecCCCC
Confidence                       1245677889999999985  12              124779999999986211 1223566665555


Q ss_pred             CCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeee-EeCHHHHHHHHHHHHHHhhhcccchhhhhhccc
Q 006854          394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-LDGPAAYDVLINFEQRWRKATKLTELTFKFKRV  472 (628)
Q Consensus       394 ~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~-l~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~  472 (628)
                      ...                                ....|+|+++. ..+..+.|+...|...|.......         
T Consensus       452 n~~--------------------------------ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~---------  490 (672)
T TIGR03705       452 HPK--------------------------------TARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK---------  490 (672)
T ss_pred             CCc--------------------------------ccccccceeEEEeChHHHHHHHHHHHHhhCCCcchh---------
Confidence            541                                12479999999 889999999999999886432110         


Q ss_pred             ccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhcccccc
Q 006854          473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC  552 (628)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~  552 (628)
                                   +..               +-                       +   +     |.            
T Consensus       491 -------------~~~---------------l~-----------------------~---~-----P~------------  499 (672)
T TIGR03705       491 -------------FKH---------------LL-----------------------V---S-----PF------------  499 (672)
T ss_pred             -------------hHH---------------HH-----------------------h---C-----cc------------
Confidence                         000               00                       0   1     11            


Q ss_pred             ccCcchhhHHHHHHHHHHHhccc----eEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       553 ~~~~~~e~~I~~ay~~aI~~Ak~----~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                          ..+..+.+.+.+.|++|++    +|+|.++| +++.                 +|..+|..|+.+|+++++||
T Consensus       500 ----~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~-l~D~-----------------~ii~aL~~As~aGV~V~Liv  554 (672)
T TIGR03705       500 ----TLRKRLLELIDREIENARAGKPARIIAKMNS-LVDP-----------------DLIDALYEASQAGVKIDLIV  554 (672)
T ss_pred             ----hHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC-CCCH-----------------HHHHHHHHHHHCCCeEEEEE
Confidence                1246788999999999999    99999999 4554                 79999999999999999998

Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.

>PHA03003 palmytilated EEV membrane glycoprotein; Provisional

Probab=99.55  E-value=3e-14  Score=153.89  Aligned_cols=158  Identities=19%  Similarity=0.181  Sum_probs=107.2

Q ss_pred             ecCCCCccCC----cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHh-hcCCEEEEEE
Q 006854          231 PLDGGKLYKP----GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLV  305 (628)
Q Consensus       231 ~l~~g~~y~~----~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA-~rGV~VrILv  305 (628)
                      .+.+||+..+    ....++++++|.+|+++|+|++|.|-|..   +.+..   ......+.++|.+|| +|||+||||+
T Consensus       201 ~~~s~P~~~~~~~~~~~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~~---~~~~~~i~~AL~~AAa~RGV~VRILv  274 (369)
T PHA03003        201 FFSDSPEHLLGYSRTLDADVVLHKIKSAKKSIDLELLSLVPVI---REDDK---TTYWPDIYNALIRAAINRGVKVRLLV  274 (369)
T ss_pred             EEecCChHHcCCCCCcCHHHHHHHHHHHhhEEEEEEeccccEE---eeCCC---CccHHHHHHHHHHHHHcCCCEEEEEE
Confidence            3445555432    23578999999999999999999886632   22210   000248999999985 9999999996


Q ss_pred             ecCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceE
Q 006854          306 WDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT  385 (628)
Q Consensus       306 wD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~v  385 (628)
                       |..+....           ......+.|.++|+++.+...       ++       ...+|+|++|||++        +
T Consensus       275 -~~~~~~~~-----------~~~~~~~~L~~~G~~~~i~vr-------i~-------~~~~H~K~~VVD~~--------~  320 (369)
T PHA03003        275 -GSWKKNDV-----------YSMASVKSLQALCVGNDLSVK-------VF-------RIPNNTKLLIVDDE--------F  320 (369)
T ss_pred             -ecCCcCCc-----------hhhhHHHHHHHcCCCCCceEe-------ee-------cCCCCceEEEEcCC--------E
Confidence             87653211           023456678888855210000       00       01269999999998        9


Q ss_pred             EEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhh
Q 006854          386 AFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKA  459 (628)
Q Consensus       386 afvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~  459 (628)
                      ||+||+|+...++..                              ..|.++ ...+|++|.+++..|.++|+.+
T Consensus       321 a~iGS~N~d~~s~~~------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~  363 (369)
T PHA03003        321 AHITSANFDGTHYLH------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS  363 (369)
T ss_pred             EEEeccccCchhhcc------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence            999999998854432                              123343 2568999999999999999864

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.55  E-value=6.8e-15  Score=135.82  Aligned_cols=114  Identities=20%  Similarity=0.320  Sum_probs=90.0

Q ss_pred             eeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854           11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ   90 (628)
Q Consensus        11 ~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~   90 (628)
                      ......|+|+|+|++|+||+++...+                                          ..||||+|++-.
T Consensus         8 ~Y~p~~~rLtV~VikarnL~~~~~~~------------------------------------------~~dpYVKV~L~~   45 (135)
T cd08692           8 CFQAVNSRIQLQILEAQNLPSSSTPL------------------------------------------TLSFFVKVGMFS   45 (135)
T ss_pred             eecCcCCeEEEEEEEccCCCcccCCC------------------------------------------CCCcEEEEEEEE
Confidence            34556788999999999999753222                                          279999999843


Q ss_pred             ----eeeeeeccccCCC-CCeEeeEEEEEecCCC--ceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854           91 ----ATVARTRVLKNSQ-EPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP  162 (628)
Q Consensus        91 ----~~~~kT~v~~~~~-~P~wne~f~~~~~~~~--~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  162 (628)
                          ..+.||++++++. +|.|||+|.|.++.+.  ..|.|+|||++..+ +++||.+.++.+.. .++..++|.++...
T Consensus        46 ~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~  124 (135)
T cd08692          46 TGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIAN  124 (135)
T ss_pred             CCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhC
Confidence                4457999999995 6999999999998763  34688999999887 99999999999763 34557899998776


Q ss_pred             CCCCC
Q 006854          163 SGSPP  167 (628)
Q Consensus       163 ~~~~~  167 (628)
                      .+++.
T Consensus       125 pr~~i  129 (135)
T cd08692         125 PEKVV  129 (135)
T ss_pred             CCCee
Confidence            66544

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.54  E-value=6.3e-14  Score=125.99  Aligned_cols=102  Identities=28%  Similarity=0.478  Sum_probs=89.9

Q ss_pred             EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeecc
Q 006854           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV   98 (628)
Q Consensus        19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v   98 (628)
                      |+|+|++|++|+..+..+.                                          +||||++.+.+....+|++
T Consensus         1 l~v~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~T~v   38 (115)
T cd04040           1 LTVDVISAENLPSADRNGK------------------------------------------SDPFVKFYLNGEKVFKTKT   38 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCC------------------------------------------CCCeEEEEECCCcceeece
Confidence            5799999999998765443                                          8999999998766689999


Q ss_pred             ccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854           99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP  162 (628)
Q Consensus        99 ~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  162 (628)
                      +.++.+|.|||+|.|.+... ...+.|+|||++..+ +++||.+.+++.++..+.....|++|...
T Consensus        39 ~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~  104 (115)
T cd04040          39 IKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQ  104 (115)
T ss_pred             ecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCC
Confidence            99999999999999998864 567999999999887 89999999999999988888999999533

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.54  E-value=8.4e-15  Score=136.10  Aligned_cols=109  Identities=27%  Similarity=0.440  Sum_probs=91.2

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--e-
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A-   91 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~-   91 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+  . 
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~   50 (136)
T cd08404          13 TTNRLTVVVLKARHLPKMDVSGL------------------------------------------ADPYVKVNLYYGKKR   50 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCeEEEEEEEcCCce
Confidence            46789999999999998776554                                          99999999853  2 


Q ss_pred             -eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854           92 -TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (628)
Q Consensus        92 -~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  166 (628)
                       ...||++++++.||.|||+|.|.++..   ...|.|+|||++.++ +++||.+.+++..  .+....+|++|....+++
T Consensus        51 ~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~  128 (136)
T cd08404          51 ISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQ  128 (136)
T ss_pred             eeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCe
Confidence             346899999999999999999998763   456899999999998 8999999999988  466678899997666654


Q ss_pred             C
Q 006854          167 P  167 (628)
Q Consensus       167 ~  167 (628)
                      .
T Consensus       129 i  129 (136)
T cd08404         129 I  129 (136)
T ss_pred             e
Confidence            3

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>PRK05443 polyphosphate kinase; Provisional

Probab=99.54  E-value=2.7e-13  Score=155.41  Aligned_cols=206  Identities=15%  Similarity=0.146  Sum_probs=154.2

Q ss_pred             chHHHHHHHHHhccc-----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccc
Q 006854          242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG  316 (628)
Q Consensus       242 ~~f~~l~~aI~~Ak~-----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~  316 (628)
                      +-|..+++.|++|.+     +|.++.|.+..                ...+.++|+.||++||+|+||+ +.-. .    
T Consensus       348 ~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~iv~aL~~Aa~~Gk~V~vlv-e~ka-r----  405 (691)
T PRK05443        348 ESFDPVVEFLRQAAADPDVLAIKQTLYRTSK----------------DSPIVDALIEAAENGKQVTVLV-ELKA-R----  405 (691)
T ss_pred             cCchHHHHHHHHhccCCCeeEEEEEEEEecC----------------CHHHHHHHHHHHHcCCEEEEEE-ccCc-c----
Confidence            568899999999998     99999998743                2589999999999999999997 5432 1    


Q ss_pred             ccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854          317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG  396 (628)
Q Consensus       317 ~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~  396 (628)
                           +.......+.+.|+++||++++  .+++              +..|.|+++||++.++ .-+.+|++|+.|+...
T Consensus       406 -----fde~~n~~~~~~L~~aGv~V~y--~~~~--------------~k~HaK~~lid~~e~~-~~~~~~~iGTgN~n~~  463 (691)
T PRK05443        406 -----FDEEANIRWARRLEEAGVHVVY--GVVG--------------LKTHAKLALVVRREGG-GLRRYVHLGTGNYNPK  463 (691)
T ss_pred             -----ccHHHHHHHHHHHHHcCCEEEE--ccCC--------------ccceeEEEEEEeecCC-ceeEEEEEcCCCCCcc
Confidence                 1122245678889999999974  2222              3569999999997222 2345899999999982


Q ss_pred             CCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeE-eCHHHHHHHHHHHHHHhhhcccchhhhhhcccccc
Q 006854          397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL-DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHW  475 (628)
Q Consensus       397 r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l-~Gpav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~  475 (628)
                      .                                ...|.|+.+.. .+..+.++...|...|.......            
T Consensus       464 s--------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~------------  499 (691)
T PRK05443        464 T--------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK------------  499 (691)
T ss_pred             h--------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCcccc------------
Confidence            1                                13678999994 55699999999999985422110            


Q ss_pred             cccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccC
Q 006854          476 RDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKD  555 (628)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~  555 (628)
                                +.                                     .++-+         |.               
T Consensus       500 ----------~~-------------------------------------~l~~s---------P~---------------  508 (691)
T PRK05443        500 ----------LR-------------------------------------KLLVS---------PF---------------  508 (691)
T ss_pred             ----------cc-------------------------------------EEeec---------Cc---------------
Confidence                      00                                     00000         10               


Q ss_pred             cchhhHHHHHHHHHHHhccc----eEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          556 VVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       556 ~~~e~~I~~ay~~aI~~Ak~----~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                       .....+.+.+.+.|.+||+    +|+|.++| +++.                 +|.++|..|+.+|++++++|
T Consensus       509 -~~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~-l~d~-----------------~ii~aL~~As~~GV~V~liV  563 (691)
T PRK05443        509 -TLRERLLELIDREIANARAGKPARIIAKMNS-LVDP-----------------QIIDALYEASQAGVKIDLIV  563 (691)
T ss_pred             -cHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCCH-----------------HHHHHHHHHHHCCCeEEEEE
Confidence             1146799999999999999    99999999 5554                 79999999999999999998

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.54  E-value=3.8e-14  Score=126.67  Aligned_cols=96  Identities=22%  Similarity=0.405  Sum_probs=80.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT   96 (628)
                      |.|.|+|++|++|+..+..+.                         .|             .++||||++.++.. +.||
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~-------------------------~~-------------~~~DPYv~v~~~~~-~~kT   41 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTR-------------------------TG-------------FDMDPFVIISFGRR-VFRT   41 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCC-------------------------CC-------------CccCceEEEEECCE-eEee
Confidence            789999999999998764321                         00             12899999999765 4699


Q ss_pred             ccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCc
Q 006854           97 RVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE  151 (628)
Q Consensus        97 ~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~  151 (628)
                      ++++++.||+|||.|.|.+...  ...|.|+|||++.++ +++||++.++|++|..+.
T Consensus        42 ~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          42 SWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             eeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence            9999999999999999998654  346899999999987 999999999999988653

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.54  E-value=4e-14  Score=128.85  Aligned_cols=102  Identities=25%  Similarity=0.442  Sum_probs=88.8

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854           16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT   92 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~   92 (628)
                      .+.|.|+|++|++|+.++ ..+.                                          +||||++.+.+  ..
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyV~v~l~~~~~~   50 (123)
T cd08390          13 EEQLTVSLIKARNLPPRTKDVAH------------------------------------------CDPFVKVCLLPDERR   50 (123)
T ss_pred             CCEEEEEEEEecCCCCccCCCCC------------------------------------------CCcEEEEEEeeCCCC
Confidence            678999999999999876 3433                                          89999999853  34


Q ss_pred             eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      ..+|++++++.||+|||.|.|.+...   ...|.|+|||.+..+ +++||++.++|+++........|++|
T Consensus        51 ~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L  121 (123)
T cd08390          51 SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL  121 (123)
T ss_pred             ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence            57999999999999999999998764   457999999999887 89999999999999988888899998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.53  E-value=5.2e-14  Score=133.13  Aligned_cols=117  Identities=29%  Similarity=0.375  Sum_probs=87.5

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeeec
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~   97 (628)
                      .|.|+|++|++|+.++..+.  ...+.  .+++                        ...+.+||||+|.+++.+ .||+
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~--~~~~~--~~~~------------------------~~~~~~DPYV~V~~~g~~-~kT~   51 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIM--ANVKK--AFLG------------------------EKKELVDPYVEVSFAGQK-VKTS   51 (151)
T ss_pred             CeEEEEEEeCCCCccChhhh--cccee--cccc------------------------CCCCCcCcEEEEEECCEe-eecc
Confidence            47899999999999885431  00000  0011                        111238999999999866 5999


Q ss_pred             cccCCCCCeEeeEEEEEecC--CCceEEEEEEEcCCCC-CeeeEEEeccccccccCce-------eEEEEEccCCC
Q 006854           98 VLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-------ISRWYDIIAPS  163 (628)
Q Consensus        98 v~~~~~~P~wne~f~~~~~~--~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~-------~~~w~~L~~~~  163 (628)
                      +++++.||+|||+|.|++..  ....|.|+|||+|..+ +++||.+.+++.++...+.       ...|+.|+++.
T Consensus        52 v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~  127 (151)
T cd04018          52 VKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP  127 (151)
T ss_pred             eEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence            99999999999999998653  3568999999999986 9999999999999885432       24677776553

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.53  E-value=7.2e-14  Score=125.32  Aligned_cols=99  Identities=20%  Similarity=0.383  Sum_probs=85.2

Q ss_pred             CCCCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEecccccccc-CceeEE
Q 006854           78 ITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT-GELISR  155 (628)
Q Consensus        78 ~~~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~-~~~~~~  155 (628)
                      +.+||||++.+++....+|++++++.||.|||.|.|.+.+. ...|.|.|+|.+.+++++||.+.++|.++.. +.....
T Consensus        11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~   90 (111)
T cd04052          11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQ   90 (111)
T ss_pred             CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccce
Confidence            44899999999887678999999999999999999999875 4679999999998889999999999999853 445689


Q ss_pred             EEEccCCCCCCCCCCceEEEEEEEeec
Q 006854          156 WYDIIAPSGSPPKPGASIQLELKFTPC  182 (628)
Q Consensus       156 w~~L~~~~~~~~~~~g~i~l~l~y~p~  182 (628)
                      ||+|..      ...|+|++++.|.|.
T Consensus        91 w~~L~~------~~~G~i~~~~~~~p~  111 (111)
T cd04052          91 WFPLSG------NGQGRIRISALWKPV  111 (111)
T ss_pred             eEECCC------CCCCEEEEEEEEecC
Confidence            999943      235999999999984

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.53  E-value=5.4e-14  Score=128.37  Aligned_cols=100  Identities=26%  Similarity=0.515  Sum_probs=88.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT   96 (628)
                      |.|.|+|++|++|+..+..+.                                          +||||++.+.... .+|
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~~T   37 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGK------------------------------------------IDPYVIIQCRTQE-RKS   37 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCC------------------------------------------cCceEEEEECCEe-eee
Confidence            689999999999998765543                                          9999999997754 588


Q ss_pred             ccccC-CCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           97 RVLKN-SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        97 ~v~~~-~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      ++.++ +.||.|||+|.|.+..+    ...|.|+|||.+.+. +++||.+.+++.++..++....|++|
T Consensus        38 ~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l  106 (124)
T cd04049          38 KVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL  106 (124)
T ss_pred             eEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence            88875 89999999999999886    467999999999887 89999999999999988788999999

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.52  E-value=7e-14  Score=125.25  Aligned_cols=81  Identities=23%  Similarity=0.349  Sum_probs=70.8

Q ss_pred             CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC-----CceEEEEEEEcCCCC-CeeeEEEeccccccccC---
Q 006854           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG---  150 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~-----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~---  150 (628)
                      +||||++++++.+ .+|++++++.||.|||+|.|.+..+     ...|.|+|||.+.++ +++||++.++|+++..+   
T Consensus        21 ~dpyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~   99 (111)
T cd04011          21 IDPVVKVEVGGQK-KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDH   99 (111)
T ss_pred             CCCEEEEEECCEe-eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCC
Confidence            8999999999765 6999999999999999999997553     357999999999887 89999999999999755   


Q ss_pred             ceeEEEEEccC
Q 006854          151 ELISRWYDIIA  161 (628)
Q Consensus       151 ~~~~~w~~L~~  161 (628)
                      .....|++|.+
T Consensus       100 ~~~~~w~~L~~  110 (111)
T cd04011         100 AFLRKWLLLTD  110 (111)
T ss_pred             cceEEEEEeeC
Confidence            45688999964

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.52  E-value=1.7e-14  Score=134.04  Aligned_cols=110  Identities=28%  Similarity=0.446  Sum_probs=91.2

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..++|.|+|++|++|+.++..+.                                          +||||++.+.+    
T Consensus        13 ~~~~L~v~vi~a~~L~~~~~~g~------------------------------------------~dpyV~v~l~~~~~~   50 (136)
T cd08405          13 TANRITVNIIKARNLKAMDINGT------------------------------------------SDPYVKVWLMYKDKR   50 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCCc
Confidence            45899999999999998765554                                          99999999842    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  166 (628)
                      ....+|++++++.||.|||+|.|.++..   ...|.|+|||.+.++ +++||.+.+++.+.  +...++|++|+...+++
T Consensus        51 ~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~  128 (136)
T cd08405          51 VEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQP  128 (136)
T ss_pred             cccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCc
Confidence            2346899999999999999999997643   457999999999987 89999999999876  55678899988776665


Q ss_pred             CC
Q 006854          167 PK  168 (628)
Q Consensus       167 ~~  168 (628)
                      ..
T Consensus       129 ~~  130 (136)
T cd08405         129 VA  130 (136)
T ss_pred             hh
Confidence            43

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.52  E-value=8.5e-14  Score=133.42  Aligned_cols=103  Identities=26%  Similarity=0.404  Sum_probs=87.3

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..|.|.|+|++|++|+..+..+.                                          +||||++.+.+    
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------------------~DPYVkv~l~~~~~~   62 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGT------------------------------------------SDSFVKCYLLPDKSK   62 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence            45899999999999998775554                                          99999999843    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      ..+.||++++++.||.|||+|.|.+...    ...|.|+|||++.++ +++||.+.+++.++........|+.+
T Consensus        63 ~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~  136 (162)
T cd04020          63 KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS  136 (162)
T ss_pred             CcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence            3467999999999999999999985432    357999999999998 99999999999998866667788777

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.51  E-value=1e-14  Score=135.49  Aligned_cols=110  Identities=29%  Similarity=0.489  Sum_probs=91.3

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..|+|.|+|++|++|+.++..+.                                          +||||+|.+.+    
T Consensus        13 ~~~~l~V~Vi~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~   50 (136)
T cd08402          13 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR   50 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccCCCC------------------------------------------CCCeEEEEEEECCcc
Confidence            67899999999999998765554                                          99999999853    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  166 (628)
                      ....+|++++++.||.|||+|.|.+...   ...|.|+|||.+.++ +++||.+.+++..  .++..++|++|+...+++
T Consensus        51 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~  128 (136)
T cd08402          51 LKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRP  128 (136)
T ss_pred             cceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCe
Confidence            2356899999999999999999998754   247899999999988 8999999999975  466678899998776554


Q ss_pred             CC
Q 006854          167 PK  168 (628)
Q Consensus       167 ~~  168 (628)
                      ..
T Consensus       129 ~~  130 (136)
T cd08402         129 IA  130 (136)
T ss_pred             ee
Confidence            43

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.51  E-value=1.6e-14  Score=133.86  Aligned_cols=112  Identities=32%  Similarity=0.473  Sum_probs=91.7

Q ss_pred             eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-
Q 006854           12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-   90 (628)
Q Consensus        12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-   90 (628)
                      .....+.|+|+|++|++|+.++..+.                                          +||||++.+.+ 
T Consensus         9 y~~~~~~L~V~v~~A~~L~~~d~~g~------------------------------------------~dpyvkv~l~~~   46 (134)
T cd08403           9 YLPTAGRLTLTIIKARNLKAMDITGF------------------------------------------SDPYVKVSLMCE   46 (134)
T ss_pred             EcCCCCEEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeC
Confidence            34457889999999999998876654                                          99999999843 


Q ss_pred             ---eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCC
Q 006854           91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS  163 (628)
Q Consensus        91 ---~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  163 (628)
                         ....+|++++++.||.|||+|.|.+...   ...|.|+|||++.++ +++||.+.+++.  ..+...++|++|+...
T Consensus        47 ~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~  124 (134)
T cd08403          47 GRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANP  124 (134)
T ss_pred             CcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCC
Confidence               2356999999999999999999998653   246899999999998 999999999987  4455567899998776


Q ss_pred             CCCC
Q 006854          164 GSPP  167 (628)
Q Consensus       164 ~~~~  167 (628)
                      +++.
T Consensus       125 ~~~~  128 (134)
T cd08403         125 RKPI  128 (134)
T ss_pred             CCee
Confidence            6643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.50  E-value=1.8e-14  Score=134.25  Aligned_cols=108  Identities=20%  Similarity=0.417  Sum_probs=90.7

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~   91 (628)
                      .++|.|+|++|+||+.++ .+.                                          +||||++.+.+    .
T Consensus        14 ~~~L~V~V~~a~nL~~~~-~~~------------------------------------------~d~yVkv~l~~~~~~~   50 (137)
T cd08409          14 LNRLTVVVLRARGLRQLD-HAH------------------------------------------TSVYVKVSLMIHNKVV   50 (137)
T ss_pred             CCeEEEEEEEecCCCccc-CCC------------------------------------------CCeEEEEEEEECCEEe
Confidence            578999999999999876 443                                          99999999864    1


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  166 (628)
                      ...||++++++.||.|||+|.|.++..   ...|.|+||+.+..+ +++||++.++......++..++|..|....+++
T Consensus        51 ~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~  129 (137)
T cd08409          51 KTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKEL  129 (137)
T ss_pred             eeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCc
Confidence            346999999999999999999998753   357999999999877 899999999987777788888999987665543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.50  E-value=8.6e-14  Score=131.85  Aligned_cols=102  Identities=25%  Similarity=0.428  Sum_probs=87.6

Q ss_pred             eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCe
Q 006854           12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA   91 (628)
Q Consensus        12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~   91 (628)
                      .....+.|.|+|++|++|++++..+.                                          +||||++.+.+.
T Consensus        23 ~~~~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~   60 (153)
T cd08676          23 AEPPIFVLKVTVIEAKGLLAKDVNGF------------------------------------------SDPYCMLGIVPA   60 (153)
T ss_pred             cCCCeEEEEEEEEeccCCcccCCCCC------------------------------------------CCceEEEEEccc
Confidence            34567899999999999998887665                                          999999998641


Q ss_pred             ----------------------------eeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEec
Q 006854           92 ----------------------------TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAI  142 (628)
Q Consensus        92 ----------------------------~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i  142 (628)
                                                  ...+|++++++.||.|||+|.|.+... ...|.|+|||++   +++||.+.+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i  137 (153)
T cd08676          61 SRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNI  137 (153)
T ss_pred             ccccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEE
Confidence                                        246899999999999999999998764 567999999998   899999999


Q ss_pred             cccccccCceeEEEEEc
Q 006854          143 PAHTIATGELISRWYDI  159 (628)
Q Consensus       143 ~l~~l~~~~~~~~w~~L  159 (628)
                      +++++. +...++||+|
T Consensus       138 ~l~~l~-~~~~d~W~~L  153 (153)
T cd08676         138 PLKDLP-SCGLDSWFKL  153 (153)
T ss_pred             EHHHhC-CCCCCCeEeC
Confidence            999998 4457999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.50  E-value=1.4e-13  Score=126.88  Aligned_cols=110  Identities=26%  Similarity=0.432  Sum_probs=93.6

Q ss_pred             ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854           10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP   89 (628)
Q Consensus        10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~   89 (628)
                      +.+.|-.+.|.|+|++|++|+..+..+.                                          +||||++.+.
T Consensus         6 ~~~~~~~~~l~v~i~~a~nL~~~~~~~~------------------------------------------~dpyv~v~~~   43 (131)
T cd04026           6 LKISVKDNKLTVEVREAKNLIPMDPNGL------------------------------------------SDPYVKLKLI   43 (131)
T ss_pred             EEEEECCCEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCcEEEEEE
Confidence            3467888999999999999997664443                                          8999999986


Q ss_pred             C----eeeeeeccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854           90 Q----ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP  162 (628)
Q Consensus        90 ~----~~~~kT~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  162 (628)
                      +    ....+|++++++.+|.|||+|.|.+...  ...|.|+|||++.++ +++||.+.++++++... ....||+|.++
T Consensus        44 ~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~  122 (131)
T cd04026          44 PDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ  122 (131)
T ss_pred             cCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence            3    3567999999999999999999998764  457999999999886 89999999999999854 67889999654

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.50  E-value=3.2e-14  Score=132.23  Aligned_cols=109  Identities=24%  Similarity=0.456  Sum_probs=88.1

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..|.|.|+|++|++|+.++..+.                                          +||||++.+.+    
T Consensus        12 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyV~v~l~~~~~~   49 (135)
T cd08410          12 SAGRLNVDIIRAKQLLQTDMSQG------------------------------------------SDPFVKIQLVHGLKL   49 (135)
T ss_pred             CCCeEEEEEEEecCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence            56899999999999998876654                                          99999999733    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCc-eeEEEEEccCCCCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS  165 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~-~~~~w~~L~~~~~~  165 (628)
                      ....+|++++++.||.|||+|.|.++..   ...|.|+|||++..+ +++||.+.|..  +..+. ..++|+.|+.+.++
T Consensus        50 ~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~--~~~~~~~~~~W~~l~~~~~~  127 (135)
T cd08410          50 IKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQ--YSSGPSETNHWRRMLNSQRT  127 (135)
T ss_pred             cceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcC--ccCCchHHHHHHHHHhCCCC
Confidence            2346999999999999999999998653   346899999999887 99999998765  33333 46789999877666


Q ss_pred             CC
Q 006854          166 PP  167 (628)
Q Consensus       166 ~~  167 (628)
                      +.
T Consensus       128 ~~  129 (135)
T cd08410         128 AV  129 (135)
T ss_pred             Ee
Confidence            44

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.50  E-value=1.2e-13  Score=128.83  Aligned_cols=101  Identities=21%  Similarity=0.410  Sum_probs=86.9

Q ss_pred             EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC---eeeee
Q 006854           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---ATVAR   95 (628)
Q Consensus        19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---~~~~k   95 (628)
                      |.|+|++|++|+.+ ..+.                                          +||||++.+..   ..+.+
T Consensus         1 L~V~Vi~A~~L~~~-~~g~------------------------------------------~dPyv~v~~~~~~~~~~~r   37 (137)
T cd08675           1 LSVRVLECRDLALK-SNGT------------------------------------------CDPFARVTLNYSSKTDTKR   37 (137)
T ss_pred             CEEEEEEccCCCcc-cCCC------------------------------------------CCcEEEEEEecCCcCCeec
Confidence            67999999999876 4443                                          99999999984   45689


Q ss_pred             eccccCCCCCeEeeEEEEEecCC----------------CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEE
Q 006854           96 TRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD  158 (628)
Q Consensus        96 T~v~~~~~~P~wne~f~~~~~~~----------------~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~  158 (628)
                      |++++++.+|.|||+|.|.+...                ...|.|+|||.+.++ +++||.+.+++.++........||+
T Consensus        38 T~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~  117 (137)
T cd08675          38 TKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYF  117 (137)
T ss_pred             cceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEe
Confidence            99999999999999999997764                357899999999986 9999999999999987777899999


Q ss_pred             ccCC
Q 006854          159 IIAP  162 (628)
Q Consensus       159 L~~~  162 (628)
                      |...
T Consensus       118 L~~~  121 (137)
T cd08675         118 LQPR  121 (137)
T ss_pred             cCCc
Confidence            9433

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.50  E-value=3e-14  Score=133.00  Aligned_cols=110  Identities=19%  Similarity=0.362  Sum_probs=89.3

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC---e
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A   91 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---~   91 (628)
                      ..++|.|+|++|+||+.++..+.                                          +||||++.+.+   .
T Consensus        13 ~~~~L~V~VikarnL~~~~~~~~------------------------------------------~dpyVkv~llp~~~~   50 (138)
T cd08408          13 LTGRLSVEVIKGSNFKNLAMNKA------------------------------------------PDTYVKLTLLNSDGQ   50 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCC------------------------------------------CCeeEEEEEEeCCCc
Confidence            35899999999999998765554                                          99999999854   1


Q ss_pred             --eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854           92 --TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (628)
Q Consensus        92 --~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~  165 (628)
                        .+.||++++++.||+|||+|.|.++..   ...|.|+|||.+.++ +++||++.+++.... .+..++|+.+..+.++
T Consensus        51 ~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~  129 (138)
T cd08408          51 EISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQ  129 (138)
T ss_pred             ceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCC
Confidence              246999999999999999999998863   457999999999887 999999999987433 2344689988776665


Q ss_pred             CC
Q 006854          166 PP  167 (628)
Q Consensus       166 ~~  167 (628)
                      +.
T Consensus       130 ~v  131 (138)
T cd08408         130 QV  131 (138)
T ss_pred             EE
Confidence            44

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.49  E-value=1.3e-14  Score=151.69  Aligned_cols=108  Identities=26%  Similarity=0.429  Sum_probs=96.4

Q ss_pred             eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-
Q 006854           12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-   90 (628)
Q Consensus        12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-   90 (628)
                      +..-...|+|+|.+|+||-+||.+|.                                          +||||++.+-+ 
T Consensus       175 ~~~~~~~l~v~i~ea~NLiPMDpNGl------------------------------------------SDPYvk~kliPD  212 (683)
T KOG0696|consen  175 AHIKRDVLTVTIKEAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPD  212 (683)
T ss_pred             EEecCceEEEEehhhccccccCCCCC------------------------------------------CCcceeEEeccC
Confidence            45567789999999999999999997                                          99999999854 


Q ss_pred             ---eeeeeeccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854           91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP  162 (628)
Q Consensus        91 ---~~~~kT~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  162 (628)
                         ..++||++++.++||+|||+|+|.+.+.  ...|.|+|||+|+-+ ++|+|...+.+++|. .++.++||.|++.
T Consensus       213 ~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsq  289 (683)
T KOG0696|consen  213 PKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQ  289 (683)
T ss_pred             CcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhh
Confidence               5567999999999999999999999886  467999999999998 999999999999998 4578899999755

>PRK13912 nuclease NucT; Provisional

Probab=99.49  E-value=5.2e-13  Score=129.83  Aligned_cols=142  Identities=17%  Similarity=0.255  Sum_probs=100.6

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~  320 (628)
                      .+++..++++|++|+++|+|+.|.|..                 ..+.++|.+|++|||+||||+ |..++...      
T Consensus        32 ~~~~~~l~~~I~~Ak~sI~i~~Y~~~~-----------------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------   87 (177)
T PRK13912         32 KDALNKLVSLISNARSSIKIAIYSFTH-----------------KDIAKALKSAAKRGVKISIIY-DYESNHNN------   87 (177)
T ss_pred             HHHHHHHHHHHHhcccEEEEEEEEEch-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccCc------
Confidence            357899999999999999999998742                 479999999999999999996 88754321      


Q ss_pred             CcccCChHHHHhhh-ccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCC
Q 006854          321 GVMATHDEETKKFF-KHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD  399 (628)
Q Consensus       321 ~~~~~~~~~~~~~l-~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d  399 (628)
                            .......+ +.+++++.........        .......+|+|++|||++        ++++||.|++...+.
T Consensus        88 ------~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~  145 (177)
T PRK13912         88 ------DQSTIGYLDKYPNIKVCLLKGLKAK--------NGKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFE  145 (177)
T ss_pred             ------chhHHHHHHhCCCceEEEecCcccc--------CcccccccceeEEEEcCC--------EEEEeCCCCChhHhc
Confidence                  11111122 2346665531110000        001234689999999998        999999999985543


Q ss_pred             CCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhc
Q 006854          400 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT  460 (628)
Q Consensus       400 ~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~  460 (628)
                      .                                =+++.+.++.| .+.++.+.|.+.|..+.
T Consensus       146 ~--------------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s~  175 (177)
T PRK13912        146 N--------------------------------NYEVLLITDDTETILKAKEYFQKMLGSCV  175 (177)
T ss_pred             c--------------------------------CCceEEEECCHHHHHHHHHHHHHHHHhcc
Confidence            2                                13567778887 66999999999997653

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.49  E-value=3.7e-14  Score=130.67  Aligned_cols=107  Identities=32%  Similarity=0.544  Sum_probs=91.3

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCe----
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA----   91 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~----   91 (628)
                      .++|.|+|++|++|+..+..+.                                          +||||++.+.+.    
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~   50 (134)
T cd00276          13 AERLTVVVLKARNLPPSDGKGL------------------------------------------SDPYVKVSLLQGGKKL   50 (134)
T ss_pred             CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCcEEEEEEEcCCeEe
Confidence            4789999999999997764443                                          899999998652    


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  166 (628)
                      ...+|++++++.+|.|||+|.|.+...   ...|.|+|||.+.++ +++||.+.+++++  .+...++|++|....+++
T Consensus        51 ~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~  127 (134)
T cd00276          51 KKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKP  127 (134)
T ss_pred             eeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCc
Confidence            356999999999999999999998775   467999999999876 8999999999998  677788999998776554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.48  E-value=2.4e-13  Score=127.82  Aligned_cols=91  Identities=31%  Similarity=0.645  Sum_probs=81.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT   96 (628)
                      |.|.|+|++|++|+..+. +.                                          +||||++.+++.. .+|
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~------------------------------------------sDPYV~v~~g~~~-~kT   37 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TS------------------------------------------SDPYVVLTLGNQK-VKT   37 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CC------------------------------------------cCcEEEEEECCEE-EEe
Confidence            789999999999987654 32                                          9999999998755 799


Q ss_pred             ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCc
Q 006854           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE  151 (628)
Q Consensus        97 ~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~  151 (628)
                      ++++++.||+|||+|.|.+..+...|.|+|||++.++ +++||.+.+++.++....
T Consensus        38 ~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~   93 (145)
T cd04038          38 RVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAA   93 (145)
T ss_pred             eeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence            9999999999999999999988888999999999998 899999999999887543

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.48  E-value=5.5e-13  Score=122.25  Aligned_cols=97  Identities=24%  Similarity=0.396  Sum_probs=79.6

Q ss_pred             CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCce-----e
Q 006854           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----I  153 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~-----~  153 (628)
                      +||||++.+.+....+|++++++.+|.|||+|.|.+.. ...|.|+|||++..+ +++||.+.++|.++.....     .
T Consensus        22 ~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~  100 (125)
T cd04021          22 PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENV  100 (125)
T ss_pred             CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccce
Confidence            99999999987656899999999999999999999864 578999999999987 8999999999998874322     3


Q ss_pred             EEEEEccCCCCCCCCCCceEEEEE
Q 006854          154 SRWYDIIAPSGSPPKPGASIQLEL  177 (628)
Q Consensus       154 ~~w~~L~~~~~~~~~~~g~i~l~l  177 (628)
                      ..|+++..+.....+..|+|.+++
T Consensus       101 ~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021         101 KLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEEccCCCcceeeeeEEEEe
Confidence            469999644311345678988875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.47  E-value=7.8e-13  Score=120.88  Aligned_cols=116  Identities=29%  Similarity=0.522  Sum_probs=94.0

Q ss_pred             EEEEEEEEeeCCCCCC--CCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-----
Q 006854           18 DLDLKIIRARRLPNMD--MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-----   90 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-----   90 (628)
                      .|+|+|++|++|+.++  ..+.                                          .||||++++..     
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~   40 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSI------------------------------------------VDPYVEVEIHGLPADD   40 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCc------------------------------------------cCCEEEEEEEeCCCCC
Confidence            6899999999999765  2332                                          89999999843     


Q ss_pred             eeeeeeccccCCC-CCeEeeEEEEEecCCC-ceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCC
Q 006854           91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK  168 (628)
Q Consensus        91 ~~~~kT~v~~~~~-~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~  168 (628)
                      ....+|+++.++. ||.|||+|.|.+..+. ..|.|+|||++..++++||.+.++++++..+   .+|++|.+..+. ..
T Consensus        41 ~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~-~~  116 (128)
T cd00275          41 SAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGE-PL  116 (128)
T ss_pred             CCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCC-CC
Confidence            3447999988765 9999999999987654 5689999999887889999999999999755   478999777665 33


Q ss_pred             CCceEEEEEEE
Q 006854          169 PGASIQLELKF  179 (628)
Q Consensus       169 ~~g~i~l~l~y  179 (628)
                      ..|.|.+++++
T Consensus       117 ~~~~l~v~~~~  127 (128)
T cd00275         117 ELSTLFVHIDI  127 (128)
T ss_pred             cceeEEEEEEE
Confidence            45899988875

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.46  E-value=3.8e-13  Score=124.58  Aligned_cols=92  Identities=29%  Similarity=0.439  Sum_probs=80.2

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC------
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ------   90 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~------   90 (628)
                      +.|.|+|++|++|+.++..+.                                          +||||+|.+.+      
T Consensus        16 ~~L~V~Vi~A~~L~~~~~~g~------------------------------------------~dPyv~v~l~~~~~~~~   53 (133)
T cd04009          16 QSLRVEILNARNLLPLDSNGS------------------------------------------SDPFVKVELLPRHLFPD   53 (133)
T ss_pred             CEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCEEEEEEECCCcCcc
Confidence            789999999999998765554                                          99999999863      


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC-----CceEEEEEEEcCCCC-CeeeEEEeccccccccC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG  150 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~-----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~  150 (628)
                      ....||++++++.||+|||+|.|.+...     ...|.|+|||++.++ +++||.+.++|+++...
T Consensus        54 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          54 VPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             ccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence            3467999999999999999999998763     457999999999998 99999999999998843

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.45  E-value=1.2e-12  Score=121.93  Aligned_cols=115  Identities=23%  Similarity=0.379  Sum_probs=92.4

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--e----
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A----   91 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~----   91 (628)
                      .+.|++++|++|+ ++..+.                                          +||||++++.+  .    
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~------------------------------------------~DPyvki~~~~~~~~~~~   38 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFN------------------------------------------PDPYVKISIQPGKRHIFP   38 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCC------------------------------------------CCceEEEEEECCCccccc
Confidence            3679999999998 555554                                          99999999954  1    


Q ss_pred             ------eeeeeccccCCCCCeE-eeEEEEEecCCCceEEEEEEEcCCCC----CeeeEEEeccccccccC---ceeEEEE
Q 006854           92 ------TVARTRVLKNSQEPVW-NEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIATG---ELISRWY  157 (628)
Q Consensus        92 ------~~~kT~v~~~~~~P~w-ne~f~~~~~~~~~~l~i~v~d~d~~~----~~~iG~~~i~l~~l~~~---~~~~~w~  157 (628)
                            ...+|++++++.||+| ||+|.|.+.. ...|.|+|||++..+    +++||.+.+++.++..+   .....|+
T Consensus        39 ~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~  117 (137)
T cd08691          39 ALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSY  117 (137)
T ss_pred             ccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEE
Confidence                  2579999999999999 9999999864 568999999976532    68999999999999754   3467899


Q ss_pred             EccCCCCCCCCCCceEEEEE
Q 006854          158 DIIAPSGSPPKPGASIQLEL  177 (628)
Q Consensus       158 ~L~~~~~~~~~~~g~i~l~l  177 (628)
                      +|. ..+......|+|.|.+
T Consensus       118 ~l~-k~~~~s~v~G~~~l~~  136 (137)
T cd08691         118 TLG-RRTPTDHVSGQLTFRF  136 (137)
T ss_pred             ECC-cCCCCCcEEEEEEEEe
Confidence            994 4445566789998876

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.45  E-value=4.3e-13  Score=123.28  Aligned_cols=94  Identities=26%  Similarity=0.355  Sum_probs=79.1

Q ss_pred             eeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854           11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ   90 (628)
Q Consensus        11 ~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~   90 (628)
                      .....-|+|.|+|++|++|+. +..+.                                          +||||+|.+++
T Consensus        22 ~~~~~~~~L~V~V~~A~~L~~-d~~g~------------------------------------------~DPYVkV~~~~   58 (127)
T cd04032          22 PTRRGLATLTVTVLRATGLWG-DYFTS------------------------------------------TDGYVKVFFGG   58 (127)
T ss_pred             cCcCCcEEEEEEEEECCCCCc-CcCCC------------------------------------------CCeEEEEEECC
Confidence            345566899999999999973 33332                                          89999999987


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecC--CCceEEEEEEEcCCCC-CeeeEEEeccccccc
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA  148 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~--~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~  148 (628)
                      . +.||++++++.||+|||+|.|....  ....|+|+|||++.++ +++||.+.++|....
T Consensus        59 ~-~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          59 Q-EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             c-cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence            6 5799999999999999999997433  3678999999999996 999999999998655

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.42  E-value=4.4e-13  Score=165.42  Aligned_cols=124  Identities=22%  Similarity=0.447  Sum_probs=105.4

Q ss_pred             ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854           10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP   89 (628)
Q Consensus        10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~   89 (628)
                      ..++.+.|.|.|+|++|+||.  +.++                                          ++||||++.++
T Consensus      1973 ~~~~~~~G~L~V~V~~a~nl~--~~~~------------------------------------------~sdPyv~l~~g 2008 (2102)
T PLN03200       1973 SLLQCLPGSLTVTIKRGNNLK--QSMG------------------------------------------NTNAFCKLTLG 2008 (2102)
T ss_pred             HHHhhCCcceEEEEeeccccc--cccC------------------------------------------CCCCeEEEEEC
Confidence            346678999999999999997  2222                                          39999999999


Q ss_pred             CeeeeeeccccCCCCCeEeeEEEEEecCCC--ceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCC
Q 006854           90 QATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP  167 (628)
Q Consensus        90 ~~~~~kT~v~~~~~~P~wne~f~~~~~~~~--~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~  167 (628)
                      +..+.||++++++.||+|||+|+|.+..+.  ..|.|+|||+|.|+++.+|.+.|++.++..+....+||+|. ++++  
T Consensus      2009 ~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~-~~~~-- 2085 (2102)
T PLN03200       2009 NGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLN-PESN-- 2085 (2102)
T ss_pred             CCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecC-cccc--
Confidence            765569999999999999999998877764  67999999999999779999999999999999999999995 3332  


Q ss_pred             CCCce---EEEEEEEee
Q 006854          168 KPGAS---IQLELKFTP  181 (628)
Q Consensus       168 ~~~g~---i~l~l~y~p  181 (628)
                       ..|+   |++++.|.+
T Consensus      2086 -k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2086 -KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             -cCCCcceEEEEEEecC
Confidence             2366   999998875

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.39  E-value=2.1e-12  Score=117.32  Aligned_cols=80  Identities=25%  Similarity=0.371  Sum_probs=70.5

Q ss_pred             CCcEEEEEECCee------eeeeccccCCCCCeEeeEEEEEecC-CCceEEEEEEEcCC----CC-CeeeEEEecccccc
Q 006854           80 SDPYVTVVVPQAT------VARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDV----FG-AQIIGTAAIPAHTI  147 (628)
Q Consensus        80 ~dpyv~v~l~~~~------~~kT~v~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~d~----~~-~~~iG~~~i~l~~l  147 (628)
                      +||||++.+.+..      ..+|++++++.||+|||+|.|.+.. ....|.|+|||++.    ++ +++||.+.+++.++
T Consensus        21 ~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l  100 (120)
T cd04048          21 SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI  100 (120)
T ss_pred             CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH
Confidence            9999999997643      5799999999999999999998653 35679999999997    66 89999999999999


Q ss_pred             ccCceeEEEEEc
Q 006854          148 ATGELISRWYDI  159 (628)
Q Consensus       148 ~~~~~~~~w~~L  159 (628)
                      ..++....|++|
T Consensus       101 ~~~~~~~~~~~l  112 (120)
T cd04048         101 VSSPGQKLTLPL  112 (120)
T ss_pred             hcCCCcEEEEEc
Confidence            988888889999

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.39  E-value=7.3e-13  Score=145.93  Aligned_cols=133  Identities=25%  Similarity=0.352  Sum_probs=117.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT   96 (628)
                      ..|.|+|.+|+|||+.+..+.                                          .||||.|.++++.+.||
T Consensus         5 ~sl~vki~E~knL~~~~~~g~------------------------------------------~D~yC~v~lD~E~v~RT   42 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGM------------------------------------------RDCYCTVNLDQEEVCRT   42 (800)
T ss_pred             cceeEEEeecccCCCCCCCCC------------------------------------------cCcceEEeecchhhhhh
Confidence            468999999999998876665                                          99999999999999999


Q ss_pred             ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 006854           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL  175 (628)
Q Consensus        97 ~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l  175 (628)
                      .++.+++.|.|.|+|.|.++.....|.|.|||.| ++ |+.||.+.|.-++|..-...+.||.| .+-.......|+|+|
T Consensus        43 ~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L-~~VD~dsEVQG~v~l  120 (800)
T KOG2059|consen   43 ATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSL-QPVDPDSEVQGKVHL  120 (800)
T ss_pred             hhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceec-cccCCChhhceeEEE
Confidence            9999999999999999999999999999999999 66 99999999999999988888999999 565556678899999


Q ss_pred             EEEEeecCCCCccccccC
Q 006854          176 ELKFTPCDKNPLYRQGIA  193 (628)
Q Consensus       176 ~l~y~p~~~~~~~~~gv~  193 (628)
                      ++.+.+........+.+.
T Consensus       121 ~l~~~e~~~~~~~~c~~L  138 (800)
T KOG2059|consen  121 ELALTEAIQSSGLVCHVL  138 (800)
T ss_pred             EEEeccccCCCcchhhhh
Confidence            999999877665555433

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.39  E-value=1.6e-12  Score=118.97  Aligned_cols=117  Identities=24%  Similarity=0.338  Sum_probs=88.7

Q ss_pred             EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCee-eeee
Q 006854           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VART   96 (628)
Q Consensus        18 ~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~-~~kT   96 (628)
                      .|+|.|++|++|+.++..+.                                          +||||++.+++.. ..||
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~~kT   38 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGK------------------------------------------SDPYLKIKLGKKKINDRD   38 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCC------------------------------------------CCcEEEEEECCeecccee
Confidence            37899999999998776554                                          9999999998743 3588


Q ss_pred             ccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEE
Q 006854           97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ  174 (628)
Q Consensus        97 ~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~  174 (628)
                      ++++++.||.|||+|.|.+..+ ...|.|+|||.+.++ +++||.+.+++.+...   ..+|..+..+...+  ..|.++
T Consensus        39 ~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~---~~~~~~~~~~~~~~--~~~~~~  113 (124)
T cd04037          39 NYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF---SKHRATCGLPPTYE--ESGPNQ  113 (124)
T ss_pred             eEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc---chHHHhccCCCccc--ccCcee
Confidence            8899999999999999987654 567999999999986 9999999999986653   23444443232221  345565


Q ss_pred             EEEEEee
Q 006854          175 LELKFTP  181 (628)
Q Consensus       175 l~l~y~p  181 (628)
                      .+-++.|
T Consensus       114 ~~~~~~~  120 (124)
T cd04037         114 WRDSLKP  120 (124)
T ss_pred             cCcccCc
Confidence            5555444

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.38  E-value=3.1e-12  Score=116.57  Aligned_cols=102  Identities=28%  Similarity=0.428  Sum_probs=83.0

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|++|+..+..+.                                          +||||++.+.+    
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~   50 (123)
T cd04035          13 ANSALHCTIIRAKGLKAMDANGL------------------------------------------SDPYVKLNLLPGASK   50 (123)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCceEEEEEecCCCC
Confidence            34689999999999997665443                                          89999999843    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEE
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYD  158 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~  158 (628)
                      ..+.+|++++++.||.|||+|.|. +...   ...+.|+|||.+.+++++||.+.++++++..++..+-|+.
T Consensus        51 ~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          51 ATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             CCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence            345799999999999999999996 3322   4579999999988788999999999999997765555543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.36  E-value=8.9e-12  Score=112.31  Aligned_cols=79  Identities=29%  Similarity=0.471  Sum_probs=61.4

Q ss_pred             CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEc-------CCCC-CeeeEEEecccc--
Q 006854           80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-------DVFG-AQIIGTAAIPAH--  145 (628)
Q Consensus        80 ~dpyv~v~l~~----~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~-------d~~~-~~~iG~~~i~l~--  145 (628)
                      +||||++.+.+    ..++||++++++.||+|||+|.|.+.. ...|.+.|||+       |..+ |+++|.+.+.|+  
T Consensus        15 sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~   93 (118)
T cd08686          15 ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQ   93 (118)
T ss_pred             CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEECHH
Confidence            89999999865    346899999999999999999999975 77899999998       4556 899988888764  


Q ss_pred             ccccCceeEEEEEc
Q 006854          146 TIATGELISRWYDI  159 (628)
Q Consensus       146 ~l~~~~~~~~w~~L  159 (628)
                      .+........-+.|
T Consensus        94 ~~~~~~~~~~~~~~  107 (118)
T cd08686          94 SLQTKKWQEKVISM  107 (118)
T ss_pred             HhccCCeeEEEEEe
Confidence            33333333344555

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>PRK01642 cls cardiolipin synthetase; Reviewed

Probab=99.34  E-value=3.6e-12  Score=142.56  Aligned_cols=154  Identities=18%  Similarity=0.126  Sum_probs=115.7

Q ss_pred             CCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEE
Q 006854          226 ILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV  305 (628)
Q Consensus       226 ~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILv  305 (628)
                      ...++.+.+||++..+.+...+.++|.+|+++|+|++-.|-|        .        ..+.++|+.||+|||+|+||+
T Consensus       302 ~~~~qi~~sgP~~~~~~~~~~~~~~I~~A~~~I~I~tpYfip--------~--------~~i~~aL~~Aa~rGV~Vril~  365 (483)
T PRK01642        302 GHTVQVIASGPGDPEETIHQFLLTAIYSARERLWITTPYFVP--------D--------EDLLAALKTAALRGVDVRIII  365 (483)
T ss_pred             CceEEEEeCCCCChhhHHHHHHHHHHHHhccEEEEEcCCcCC--------C--------HHHHHHHHHHHHcCCEEEEEe
Confidence            346778888999887888999999999999999999632322        1        579999999999999999997


Q ss_pred             ecCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceE
Q 006854          306 WDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT  385 (628)
Q Consensus       306 wD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~v  385 (628)
                       +........        ........+.|.++||++..   +...              ..|.|++|||++        +
T Consensus       366 -p~~~d~~~~--------~~~~~~~~~~L~~~Gv~I~~---y~~~--------------~~HaK~~ivD~~--------~  411 (483)
T PRK01642        366 -PSKNDSLLV--------FWASRAFFTELLEAGVKIYR---YEGG--------------LLHTKSVLVDDE--------L  411 (483)
T ss_pred             -CCCCCcHHH--------HHHHHHHHHHHHHcCCEEEE---eCCC--------------ceEeEEEEECCC--------E
Confidence             655332211        01134456667789999873   2221              249999999998        9


Q ss_pred             EEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhcc
Q 006854          386 AFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK  461 (628)
Q Consensus       386 afvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~  461 (628)
                      +++|+.|+....|..                                =+++.+.+.+| .++++.+.|.++|..+..
T Consensus       412 ~~vGS~N~d~rS~~~--------------------------------N~E~~~~i~d~~~~~~l~~~f~~d~~~s~~  456 (483)
T PRK01642        412 ALVGTVNLDMRSFWL--------------------------------NFEITLVIDDTGFAADLAAMQEDYFARSRE  456 (483)
T ss_pred             EEeeCCcCCHhHHhh--------------------------------hhcceEEEECHHHHHHHHHHHHHHHHhCeE
Confidence            999999997733311                                13778888887 689999999999987654

>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A

Probab=99.21  E-value=9.5e-11  Score=106.56  Aligned_cols=124  Identities=20%  Similarity=0.372  Sum_probs=86.4

Q ss_pred             HHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCcc-CcccccCCCcccC
Q 006854          247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH-DKLGVKTPGVMAT  325 (628)
Q Consensus       247 l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~-~~~~~~~~~~~~~  325 (628)
                      |.++|++|+++|+|+.+.|..                 ..+.++|..++++||+|+||+ +..... ...       ...
T Consensus         1 l~~~i~~A~~~i~i~~~~~~~-----------------~~i~~~l~~~~~~gv~v~ii~-~~~~~~~~~~-------~~~   55 (126)
T PF13091_consen    1 LIDLIKSAQKSIWIASPYITD-----------------PDIIKALLDAAKRGVKVRIIV-DSNQDDSEAI-------NLA   55 (126)
T ss_dssp             HHHHHHT-SSEEEEEESSS-S-----------------CHHHHHHHHHHHTT-EEEEEE-ECGGGHHCCC-------SHH
T ss_pred             CHHHHhccCCEEEEEEEecCc-----------------HHHHHHHHHHHHCCCeEEEEE-CCCccccchh-------hhH
Confidence            578999999999999875521                 478999999999999999997 654210 000       000


Q ss_pred             ChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCC
Q 006854          326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL  405 (628)
Q Consensus       326 ~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~  405 (628)
                      ....+.+.+...|+++.                     .+.|.|++|||++        ++++|+.|++...|.      
T Consensus        56 ~~~~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~~------  100 (126)
T PF13091_consen   56 SLKELRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSFR------  100 (126)
T ss_dssp             HHHHHHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCSC------
T ss_pred             HHHHHHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchhc------
Confidence            12334455577888865                     1349999999998        999999999996552      


Q ss_pred             ccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHH-HHHHHHHHHHHH
Q 006854          406 FRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRW  456 (628)
Q Consensus       406 ~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpa-v~~l~~~F~~rW  456 (628)
                                                ..++..+.+++|. ++++.+.|.+.|
T Consensus       101 --------------------------~n~E~~~~~~~~~~~~~~~~~F~~~W  126 (126)
T PF13091_consen  101 --------------------------RNYELGVIIDDPELVKELIREFDQMW  126 (126)
T ss_dssp             --------------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred             --------------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence                                      2369999999995 999999998889

...

>PRK11263 cardiolipin synthase 2; Provisional

Probab=99.21  E-value=6.2e-11  Score=129.57  Aligned_cols=152  Identities=13%  Similarity=0.079  Sum_probs=108.0

Q ss_pred             CCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEe
Q 006854          227 LPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVW  306 (628)
Q Consensus       227 ~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvw  306 (628)
                      ..++.+.+||+.....+...+.++|.+|+++|+|++=-|      .  +.        ..+.++|+.||+|||+|+||+ 
T Consensus       191 ~~~~~v~~~p~~~~~~i~~~~~~~i~~A~~~I~I~tpYf------~--p~--------~~l~~aL~~Aa~RGV~V~ii~-  253 (411)
T PRK11263        191 AQALLVWRDNEEHRDDIERHYLKALRQARREVIIANAYF------F--PG--------YRLLRALRNAARRGVRVRLIL-  253 (411)
T ss_pred             eEEEEEECCCcchHHHHHHHHHHHHHHhceEEEEEecCc------C--CC--------HHHHHHHHHHHHCCCEEEEEe-
Confidence            345555566665556788899999999999999986222      2  11        579999999999999999997 


Q ss_pred             cCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEE
Q 006854          307 DDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITA  386 (628)
Q Consensus       307 D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~va  386 (628)
                      +..++...        +........+.|.++||++..   +...              ..|.|++|||++        ++
T Consensus       254 ~~~~d~~~--------~~~a~~~~~~~Ll~~Gv~I~~---y~~~--------------~lHaK~~viD~~--------~~  300 (411)
T PRK11263        254 QGEPDMPI--------VRVGARLLYNYLLKGGVQIYE---YCRR--------------PLHGKVALMDDH--------WA  300 (411)
T ss_pred             CCCCCcHH--------HHHHHHHHHHHHHHCCCEEEE---ecCC--------------CceeEEEEECCC--------EE
Confidence            66544321        111123456678889999863   2211              249999999998        99


Q ss_pred             EEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhc
Q 006854          387 FIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT  460 (628)
Q Consensus       387 fvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~  460 (628)
                      ++|+.|+....+ ..                               =..+.+.|.+| .+++|...|.+.+...+
T Consensus       301 ~vGS~Nld~rS~-~l-------------------------------N~E~~~~i~d~~~a~~l~~~~~~~~~~~s  343 (411)
T PRK11263        301 TVGSSNLDPLSL-SL-------------------------------NLEANLIIRDRAFNQTLRDNLNGLIAADC  343 (411)
T ss_pred             EEeCCcCCHHHh-hh-------------------------------hhhcCEEEeCHHHHHHHHHHHHHHHHhhC
Confidence            999999987322 10                               02566777887 56888899999996333

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.20  E-value=7.7e-11  Score=105.15  Aligned_cols=69  Identities=33%  Similarity=0.556  Sum_probs=59.3

Q ss_pred             CCcEEEEEECCe-----eeeeeccccCCCCCeEeeEEEEEecC-----CCceEEEEEEEcCCCC-CeeeEEEeccccccc
Q 006854           80 SDPYVTVVVPQA-----TVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA  148 (628)
Q Consensus        80 ~dpyv~v~l~~~-----~~~kT~v~~~~~~P~wne~f~~~~~~-----~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~  148 (628)
                      +||||++++.+.     ..++|++++++.||.|| +|.|++..     ....|.|+|||++.++ +++||.+.+++.++.
T Consensus        21 ~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          21 SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL   99 (110)
T ss_pred             CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence            999999998542     35899999999999999 78887532     2568999999999997 899999999999998


Q ss_pred             c
Q 006854          149 T  149 (628)
Q Consensus       149 ~  149 (628)
                      .
T Consensus       100 ~  100 (110)
T cd04047         100 K  100 (110)
T ss_pred             c
Confidence            3

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.16  E-value=1.2e-10  Score=97.60  Aligned_cols=81  Identities=44%  Similarity=0.762  Sum_probs=69.6

Q ss_pred             EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCe--eeeee
Q 006854           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA--TVART   96 (628)
Q Consensus        19 L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~--~~~kT   96 (628)
                      |.|+|++|++|+..+..+.                                          .||||++.+...  ...+|
T Consensus         1 L~v~I~~a~~L~~~~~~~~------------------------------------------~~~yv~v~~~~~~~~~~~T   38 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGK------------------------------------------PDPYVRVSVNGSESTKYKT   38 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSS------------------------------------------BEEEEEEEEETTTCEEEEE
T ss_pred             CEEEEEEEECCCCcccCCc------------------------------------------ccccceeecceeeeeeeee
Confidence            7899999999997664443                                          899999999873  33899


Q ss_pred             ccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEe
Q 006854           97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAA  141 (628)
Q Consensus        97 ~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~  141 (628)
                      ++++++.+|.|||+|.|.+..+ ...|.|+|||.+.++ +++||++.
T Consensus        39 ~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~   85 (85)
T PF00168_consen   39 KVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK   85 (85)
T ss_dssp             CCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred             eeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence            9999999999999999995554 556999999999999 99999873

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd00030 C2 C2 domain

Probab=99.11  E-value=4.6e-10  Score=95.42  Aligned_cols=80  Identities=34%  Similarity=0.646  Sum_probs=71.1

Q ss_pred             CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecC-CCceEEEEEEEcCCCC-CeeeEEEeccccccc-cCceeEEE
Q 006854           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRW  156 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~-~~~~~~~w  156 (628)
                      .+|||++.+.+....+|+++..+.+|.|||.|.|.+.. ....|.|+|++.+... +.+||.+.+++.++. .......|
T Consensus        20 ~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~   99 (102)
T cd00030          20 SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW   99 (102)
T ss_pred             CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcce
Confidence            89999999988556799999999999999999999988 6778999999998887 899999999999998 66667778


Q ss_pred             EEc
Q 006854          157 YDI  159 (628)
Q Consensus       157 ~~L  159 (628)
                      ++|
T Consensus       100 ~~l  102 (102)
T cd00030         100 LPL  102 (102)
T ss_pred             ecC
Confidence            765

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=1.4e-10  Score=127.11  Aligned_cols=115  Identities=30%  Similarity=0.515  Sum_probs=93.4

Q ss_pred             eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-
Q 006854           12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-   90 (628)
Q Consensus        12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-   90 (628)
                      ....+|.|+|.|++|++|+.++..+.                                          +||||++.+.. 
T Consensus       293 Y~p~~g~ltv~v~kar~L~~~~~~~~------------------------------------------~d~~Vk~~l~~~  330 (421)
T KOG1028|consen  293 YLPTAGRLTVVVIKARNLKSMDVGGL------------------------------------------SDPYVKVTLLDG  330 (421)
T ss_pred             eecCCCeEEEEEEEecCCCcccCCCC------------------------------------------CCccEEEEEecC
Confidence            34457999999999999999887765                                          89999999854 


Q ss_pred             ---eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCC
Q 006854           91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS  163 (628)
Q Consensus        91 ---~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  163 (628)
                         .++.||.+++++.||+|||+|.|.++..   ...|.|+|||+|.++ +++||.+.+....  .+....+|..+....
T Consensus       331 ~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p  408 (421)
T KOG1028|consen  331 DKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSP  408 (421)
T ss_pred             CceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCc
Confidence               4567999999999999999999988875   456899999999999 7899998887764  455567788877666


Q ss_pred             CCCCCCC
Q 006854          164 GSPPKPG  170 (628)
Q Consensus       164 ~~~~~~~  170 (628)
                      +++...+
T Consensus       409 ~~pv~~w  415 (421)
T KOG1028|consen  409 RKPVAQW  415 (421)
T ss_pred             cCceeee
Confidence            5554433

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.05  E-value=1.1e-09  Score=93.71  Aligned_cols=73  Identities=42%  Similarity=0.754  Sum_probs=65.3

Q ss_pred             CCcEEEEEECCe--eeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCce
Q 006854           80 SDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL  152 (628)
Q Consensus        80 ~dpyv~v~l~~~--~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~  152 (628)
                      .+|||++.+...  ...+|+++.++.+|.|||.|.|.+... ...|.|+||+.+... +.++|.+.+++.++..+..
T Consensus        21 ~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~   97 (101)
T smart00239       21 SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR   97 (101)
T ss_pred             CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence            899999999875  568999999999999999999999887 788999999998877 8999999999998876543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.03  E-value=6.6e-10  Score=119.82  Aligned_cols=167  Identities=27%  Similarity=0.473  Sum_probs=126.5

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~   94 (628)
                      +.|.|-|+|..||+||.||..+.                                         ..|.||++.+.+.. .
T Consensus         1 mpgkl~vki~a~r~lpvmdkasd-----------------------------------------~tdafveik~~n~t-~   38 (1169)
T KOG1031|consen    1 MPGKLGVKIKAARHLPVMDKASD-----------------------------------------LTDAFVEIKFANTT-F   38 (1169)
T ss_pred             CCCcceeEEEeccCCcccccccc-----------------------------------------cchheeEEEecccc-e
Confidence            46889999999999999987765                                         38999999999876 7


Q ss_pred             eeccccCCCCCeEe-eEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecccccccc----------CceeEEEEEc
Q 006854           95 RTRVLKNSQEPVWN-EHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT----------GELISRWYDI  159 (628)
Q Consensus        95 kT~v~~~~~~P~wn-e~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~----------~~~~~~w~~L  159 (628)
                      ||.|-.+++||.|| +-|.|.+...   .++|.|++.|+|..+ ++.||.+.|.+..+..          |..+.+|||+
T Consensus        39 ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pi  118 (1169)
T KOG1031|consen   39 KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPI  118 (1169)
T ss_pred             ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeec
Confidence            99999999999999 5589998875   578999999999999 8999999998876652          3467899999


Q ss_pred             cCCCCCCCCCCceEEEEEE---EeecCCCCccccccCCCCCCCCccCccccCCCCCceeEeecccccCCCCCceecCCCC
Q 006854          160 IAPSGSPPKPGASIQLELK---FTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK  236 (628)
Q Consensus       160 ~~~~~~~~~~~g~i~l~l~---y~p~~~~~~~~~gv~~~p~~~~~~~s~~P~~~gn~v~~~~~g~~~~g~~~~~~l~~g~  236 (628)
                      ++.--   ...|+|.+-+.   |.....-|+.++|+.-    .+..  ..|.       -|. +....||.++.++-++|
T Consensus       119 fdtih---girgeinvivkvdlfndlnkf~qsscgvkf----fctt--sip~-------~yr-a~iihgfveelvvnddp  181 (1169)
T KOG1031|consen  119 FDTIH---GIRGEINVIVKVDLFNDLNKFPQSSCGVKF----FCTT--SIPF-------CYR-AQIIHGFVEELVVNDDP  181 (1169)
T ss_pred             ceecc---cccceeEEEEEEeehhhhhhccccccccee----eecc--cCcc-------cee-ehhhhhhhHHhccCCCc
Confidence            76532   24588888776   5555555565555332    1110  0111       111 23456899999999999


Q ss_pred             ccCC
Q 006854          237 LYKP  240 (628)
Q Consensus       237 ~y~~  240 (628)
                      +|.|
T Consensus       182 eyqw  185 (1169)
T KOG1031|consen  182 EYQW  185 (1169)
T ss_pred             chhh
Confidence            9988

>PHA02820 phospholipase-D-like protein; Provisional

Probab=98.99  E-value=3.6e-09  Score=116.30  Aligned_cols=154  Identities=14%  Similarity=0.136  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHH-HhhcCCEEEEEEecCCCccCcccccCCCc
Q 006854          244 WEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKY-KSEEGVRVLLLVWDDKTSHDKLGVKTPGV  322 (628)
Q Consensus       244 f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~-aA~rGV~VrILvwD~~gs~~~~~~~~~~~  322 (628)
                      ..+++.+|.+|+++|+|++=-|-|+.+...++..     -...|.++|++ |++|||+||||+ -........       
T Consensus       220 ~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~-----yw~~i~~AL~~AA~~RGV~VriLv-p~~~d~~~~-------  286 (424)
T PHA02820        220 LTALLSCIRNASKFVYVSVMNFIPIIYSKAGKIL-----FWPYIEDELRRAAIDRKVSVKLLI-SCWQRSSFI-------  286 (424)
T ss_pred             HHHHHHHHHHHhhEEEEEEccccceeeccCCccc-----chHHHHHHHHHHHHhCCCEEEEEE-eccCCCCcc-------
Confidence            5889999999999999998777776332222211     13579999996 567999999998 333222110       


Q ss_pred             ccCChHHHHhhhccCCceEE--eccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCC
Q 006854          323 MATHDEETKKFFKHSSVNCV--LAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (628)
Q Consensus       323 ~~~~~~~~~~~l~~~gv~~~--~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~  400 (628)
                      + .......+.|..+|+++.  .. .+|....      ......-+|.|++|||+         .|++|..|+...+|..
T Consensus       287 ~-~a~~~~l~~L~~~gv~I~Vk~y-~~p~~~~------~~~~~~f~HaK~~vvD~---------~a~IGTsN~D~rsf~~  349 (424)
T PHA02820        287 M-RNFLRSIAMLKSKNINIEVKLF-IVPDADP------PIPYSRVNHAKYMVTDK---------TAYIGTSNWTGNYFTD  349 (424)
T ss_pred             H-HHHHHHHHHHhccCceEEEEEE-EcCcccc------cCCcceeeeeeEEEEcc---------cEEEECCcCCHHHHhc
Confidence            0 001223444567888863  11 1221100      00112356999999995         8999999999965532


Q ss_pred             CCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeC----HHHHHHHHHHHHHHhhh
Q 006854          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG----PAAYDVLINFEQRWRKA  459 (628)
Q Consensus       401 ~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~G----pav~~l~~~F~~rW~~~  459 (628)
                      .                                .-+.+.+..    +.+++|+..|.++|+..
T Consensus       350 n--------------------------------~ev~~~i~~~~~~~~~~~l~~~F~~D~~s~  380 (424)
T PHA02820        350 T--------------------------------CGVSINITPDDGLGLRQQLEDIFIRDWNSK  380 (424)
T ss_pred             c--------------------------------CcEEEEEecCCcHHHHHHHHHHHHHhcCCC
Confidence            0                                245666654    59999999999999864

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=98.98  E-value=2.3e-09  Score=99.03  Aligned_cols=72  Identities=24%  Similarity=0.300  Sum_probs=62.9

Q ss_pred             CCcEEEEEECC--eeeeeeccccCCCC--CeEeeEEEEEecCC------------------------CceEEEEEEEcCC
Q 006854           80 SDPYVTVVVPQ--ATVARTRVLKNSQE--PVWNEHFNIPLAHP------------------------LSNLEIQVKDDDV  131 (628)
Q Consensus        80 ~dpyv~v~l~~--~~~~kT~v~~~~~~--P~wne~f~~~~~~~------------------------~~~l~i~v~d~d~  131 (628)
                      +||||++.+.+  ..+++|.|..++.|  |.||+.|.|++..+                        ...|.++|||.|.
T Consensus        25 sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~  104 (133)
T cd08374          25 SDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDK  104 (133)
T ss_pred             cCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcc
Confidence            99999999987  56689999999999  99999999986661                        2458999999999


Q ss_pred             CC-CeeeEEEeccccccccCc
Q 006854          132 FG-AQIIGTAAIPAHTIATGE  151 (628)
Q Consensus       132 ~~-~~~iG~~~i~l~~l~~~~  151 (628)
                      ++ +++||.+.++|..+..+.
T Consensus       105 ~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374         105 FSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cCCCCcceEEEEEhhhccccc
Confidence            98 999999999999887654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=8.2e-10  Score=120.32  Aligned_cols=124  Identities=25%  Similarity=0.476  Sum_probs=101.6

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~   94 (628)
                      ....++++|+.|++|...|..|.                                          +||||.+.++..+ .
T Consensus       293 wsakitltvlcaqgl~akdktg~------------------------------------------sdpyvt~qv~ktk-r  329 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKDKTGK------------------------------------------SDPYVTAQVGKTK-R  329 (1283)
T ss_pred             cceeeEEeeeecccceecccCCC------------------------------------------CCCcEEEeecccc-h
Confidence            34568999999999998877665                                          9999999998866 5


Q ss_pred             eeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCC------------CCeeeEEEeccccccccCceeEEEEEccCC
Q 006854           95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAP  162 (628)
Q Consensus        95 kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~------------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  162 (628)
                      ||+++...+||+|||.|.|........|+++|||.|..            +|+|+|+..|-+..+. | +.+.||.|. .
T Consensus       330 rtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynle-k  406 (1283)
T KOG1011|consen  330 RTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNLE-K  406 (1283)
T ss_pred             hhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcchh-h
Confidence            99999999999999999999998889999999998733            3899999999888776 3 467899994 4


Q ss_pred             CCCCCCCCceEEEEEEEeecCC
Q 006854          163 SGSPPKPGASIQLELKFTPCDK  184 (628)
Q Consensus       163 ~~~~~~~~g~i~l~l~y~p~~~  184 (628)
                      .......+|-|+|.|+---...
T Consensus       407 rtdksavsgairlhisveikge  428 (1283)
T KOG1011|consen  407 RTDKSAVSGAIRLHISVEIKGE  428 (1283)
T ss_pred             ccchhhccceEEEEEEEEEcCc
Confidence            3344556788888887555443

>PLN02223 phosphoinositide phospholipase C

Probab=98.96  E-value=7.1e-09  Score=114.58  Aligned_cols=96  Identities=23%  Similarity=0.432  Sum_probs=78.6

Q ss_pred             CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEEecCCC-ceEEEEEEEcCCCC-CeeeEEEeccccccccCcee
Q 006854           80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI  153 (628)
Q Consensus        80 ~dpyv~v~l~~----~~~~kT~v~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~  153 (628)
                      .||||+|.+.+    ....+|++..++.||.|||+|.|.+..+. .-|.|+|+|.|... ++++|+..+|+..|..|-  
T Consensus       435 ~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy--  512 (537)
T PLN02223        435 PDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI--  512 (537)
T ss_pred             CCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc--
Confidence            89999999854    33457888888999999999999987765 45799999999877 899999999999999885  


Q ss_pred             EEEEEccCCCCCCCCCCceEEEEEEE
Q 006854          154 SRWYDIIAPSGSPPKPGASIQLELKF  179 (628)
Q Consensus       154 ~~w~~L~~~~~~~~~~~g~i~l~l~y  179 (628)
                       ++++|.+..|.+... .+|.+.+.|
T Consensus       513 -R~VpL~~~~g~~l~~-~~Ll~~f~~  536 (537)
T PLN02223        513 -RAVPLYDERGKACSS-TMLLTRFKW  536 (537)
T ss_pred             -eeEeccCCCcCCCCC-ceEEEEEEe
Confidence             678998888775432 466666654

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.96  E-value=1.9e-09  Score=125.27  Aligned_cols=126  Identities=25%  Similarity=0.343  Sum_probs=106.2

Q ss_pred             eeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeee
Q 006854           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV   93 (628)
Q Consensus        14 ~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~   93 (628)
                      --.|.|+|.+..|.||++.|.++.                                          +||||++.+..++.
T Consensus      1037 ~nsG~l~I~~~~~~nl~~~d~ng~------------------------------------------sDpfv~~~ln~k~v 1074 (1227)
T COG5038        1037 ENSGYLTIMLRSGENLPSSDENGY------------------------------------------SDPFVKLFLNEKSV 1074 (1227)
T ss_pred             cccCcEEEEEeccCCCcccccCCC------------------------------------------CCceEEEEecceec
Confidence            347899999999999999998887                                          99999999999889


Q ss_pred             eeeccccCCCCCeEeeEEEEEecC-CCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCc
Q 006854           94 ARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA  171 (628)
Q Consensus        94 ~kT~v~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g  171 (628)
                      ++|+++++++||+|||+|.+++.. ....+++.|+|+|.-. ++.||++.++|+.+..+.....-.+|.+. . .....|
T Consensus      1075 yktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk-~-~~~~~g 1152 (1227)
T COG5038        1075 YKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGK-T-FIVLDG 1152 (1227)
T ss_pred             ccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccCc-c-eEeccc
Confidence            999999999999999999999885 4677899999999988 89999999999999988777767777322 2 223456


Q ss_pred             eEEEEEEEeecC
Q 006854          172 SIQLELKFTPCD  183 (628)
Q Consensus       172 ~i~l~l~y~p~~  183 (628)
                      .++....|.+.-
T Consensus      1153 ~~~~~~~~r~~~ 1164 (1227)
T COG5038        1153 TLHPGFNFRSKY 1164 (1227)
T ss_pred             Eeecceecchhh
Confidence            777777666643

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.94  E-value=4.9e-09  Score=122.00  Aligned_cols=136  Identities=26%  Similarity=0.417  Sum_probs=108.2

Q ss_pred             eeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeee
Q 006854           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV   93 (628)
Q Consensus        14 ~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~   93 (628)
                      .--|.|+|+|.+|++|...+..-.                                        ++.|||+++.+.....
T Consensus       433 ~aIGVv~vkI~sa~~lk~~d~~i~----------------------------------------~~vDpyit~~~~~r~~  472 (1227)
T COG5038         433 TAIGVVEVKIKSAEGLKKSDSTIN----------------------------------------GTVDPYITVTFSDRVI  472 (1227)
T ss_pred             CeeEEEEEEEeeccCccccccccc----------------------------------------CCCCceEEEEeccccC
Confidence            345899999999999986652211                                        1399999999888677


Q ss_pred             eeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeE-EEEEccCCCCCCCCCCc
Q 006854           94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS-RWYDIIAPSGSPPKPGA  171 (628)
Q Consensus        94 ~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~-~w~~L~~~~~~~~~~~g  171 (628)
                      .||++.+++.||+|||+|.+.+....+.|.++|||.+.++ |+++|++.++|..|....... +-+.+. ...   +..|
T Consensus       473 gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~---k~vG  548 (1227)
T COG5038         473 GKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNT---KNVG  548 (1227)
T ss_pred             CccceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccC---ccce
Confidence            8999999999999999999999999999999999987777 999999999999888554443 344442 222   4569


Q ss_pred             eEEEEEEEeecCCCCccccccC
Q 006854          172 SIQLELKFTPCDKNPLYRQGIA  193 (628)
Q Consensus       172 ~i~l~l~y~p~~~~~~~~~gv~  193 (628)
                      +|...++|.|...+..-..+..
T Consensus       549 rL~yDl~ffp~~e~k~~~~~s~  570 (1227)
T COG5038         549 RLTYDLRFFPVIEDKKELKGSV  570 (1227)
T ss_pred             EEEEeeeeecccCCcccccccc
Confidence            9999999999876665555444

>PLN02952 phosphoinositide phospholipase C

Probab=98.89  E-value=1.8e-08  Score=113.62  Aligned_cols=95  Identities=22%  Similarity=0.435  Sum_probs=76.5

Q ss_pred             CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEEecCCC-ceEEEEEEEcCCCC-CeeeEEEeccccccccCcee
Q 006854           80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI  153 (628)
Q Consensus        80 ~dpyv~v~l~~----~~~~kT~v~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~  153 (628)
                      .||||+|.+-+    ....+|+++.++.||+|||+|.|++..+. .-|.|.|+|+|..+ ++++|++.+|+..|..|-  
T Consensus       497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy--  574 (599)
T PLN02952        497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI--  574 (599)
T ss_pred             CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--
Confidence            69999999854    34469999999999999999999977764 45799999999887 899999999999999885  


Q ss_pred             EEEEEccCCCCCCCCCCceEEEEEE
Q 006854          154 SRWYDIIAPSGSPPKPGASIQLELK  178 (628)
Q Consensus       154 ~~w~~L~~~~~~~~~~~g~i~l~l~  178 (628)
                       +|++|.+..|.+.. ...|.+.+.
T Consensus       575 -R~VpL~~~~G~~l~-~a~Llv~f~  597 (599)
T PLN02952        575 -RSVPLHDKKGEKLK-NVRLLMRFI  597 (599)
T ss_pred             -eeEeCcCCCCCCCC-CEEEEEEEE
Confidence             59999877776442 234444443

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.79  E-value=4.6e-08  Score=110.11  Aligned_cols=96  Identities=23%  Similarity=0.472  Sum_probs=78.4

Q ss_pred             CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCcee
Q 006854           80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI  153 (628)
Q Consensus        80 ~dpyv~v~l~~----~~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~  153 (628)
                      .||||+|.+-+    ....+|++..++.||.|||+|.|++.-+ ..-|.|.|+|+|... ++++|+..+|+..|..|-  
T Consensus       496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy--  573 (598)
T PLN02230        496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI--  573 (598)
T ss_pred             CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc--
Confidence            79999999843    3346899999999999999999997766 456799999999876 999999999999999884  


Q ss_pred             EEEEEccCCCCCCCCCCceEEEEEEE
Q 006854          154 SRWYDIIAPSGSPPKPGASIQLELKF  179 (628)
Q Consensus       154 ~~w~~L~~~~~~~~~~~g~i~l~l~y  179 (628)
                       +.++|.+..|.+... .+|.+.+.|
T Consensus       574 -R~V~L~~~~G~~l~~-~~Ll~~f~~  597 (598)
T PLN02230        574 -HAVPLFNRKGVKYSS-TRLLMRFEF  597 (598)
T ss_pred             -ceEeccCCCcCCCCC-CeeEEEEEe
Confidence             568898887775433 467776665

>KOG3603 consensus Predicted phospholipase D [General function prediction only]

Probab=98.78  E-value=7.8e-07  Score=94.73  Aligned_cols=254  Identities=16%  Similarity=0.099  Sum_probs=146.5

Q ss_pred             hHHHHHHHHHhccceEEEEEEEEecccc-eeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCC
Q 006854          243 CWEDICHAISEAHHLIYIVGWSVFHKIK-LIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG  321 (628)
Q Consensus       243 ~f~~l~~aI~~Ak~sI~i~~w~f~~~~~-l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~  321 (628)
                      .+++.++.+++|+++++|..|-+.-... +--++. -...  +..+...|..++.+||.|||.. .... ...       
T Consensus        73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~ds-St~~--G~~vy~~L~~~~~~gIsiriA~-~~p~-~~~-------  140 (456)
T KOG3603|consen   73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDS-STQY--GEQVYNTLLALAKSGVKIRIAQ-SYPS-GGP-------  140 (456)
T ss_pred             HHHHHHHHhhccceEEEEEEEeeccccceeccCCC-cchH--HHHHHHHHHHhccCCeEEEEEe-ecCC-CCC-------
Confidence            4688899999999999998775432100 000010 0112  2689999999999999999996 3331 110       


Q ss_pred             cccCChHHHHhhhccCC-ceEEe--ccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCC
Q 006854          322 VMATHDEETKKFFKHSS-VNCVL--APRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRY  398 (628)
Q Consensus       322 ~~~~~~~~~~~~l~~~g-v~~~~--~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~  398 (628)
                           ++.-...|+..| +++.-  .+.++.+             .-.|-|+.|||++        .-|+||+|+...- 
T Consensus       141 -----~~~d~~~Le~~Gaa~vr~id~~~l~g~-------------GvlHtKf~vvD~k--------hfylGSaNfDWrS-  193 (456)
T KOG3603|consen  141 -----PNADLQVLESLGLAQVRSIDMNRLTGG-------------GVLHTKFWVVDIK--------HFYLGSANFDWRS-  193 (456)
T ss_pred             -----CcccHHHHHhCCCceEEeecccccccC-------------ceEEEEEEEEecc--------eEEEeccccchhh-
Confidence                 112234466666 66651  1223221             2349999999998        9999999999822 


Q ss_pred             CCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeC--HHHHHHHHHHHHHHhhhcccchhhhhhccccccc
Q 006854          399 DTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG--PAAYDVLINFEQRWRKATKLTELTFKFKRVSHWR  476 (628)
Q Consensus       399 d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~G--pav~~l~~~F~~rW~~~~~~~~~~~~~~~~~~~~  476 (628)
                      .+          +                     --.+.+.++-  -.++||...|.+.|..-.... +.+     ..|.
T Consensus       194 lT----------q---------------------vkElGv~v~NCpclakDL~kiFe~yW~lg~~~s-~~p-----~~wp  236 (456)
T KOG3603|consen  194 LT----------Q---------------------VKELGVVVRNCPCLAKDLKKIFERYWYLGNAKS-LIP-----KKWP  236 (456)
T ss_pred             cc----------c---------------------eeEeeeEEecChhHHHHHHHHHHHHhcCCCCCc-cCC-----CCCc
Confidence            11          0                     0123333322  389999999999998644331 000     0111


Q ss_pred             ccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCc
Q 006854          477 DDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDV  556 (628)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~  556 (628)
                      ..       ++    .          ......|..-   ..+......++..|-|       |..+     .|       
T Consensus       237 ~~-------~s----t----------~~N~~~p~~~---~~dg~~~~~y~saSP~-------~~~~-----~g-------  273 (456)
T KOG3603|consen  237 NC-------YS----T----------HYNKPLPMKI---AVDGTPATPYISASPP-------PLNP-----SG-------  273 (456)
T ss_pred             cc-------cc----c----------cccccCccee---ecCCCCcceEEccCCC-------CCCC-----CC-------
Confidence            00       00    0          0000000000   1112233444444421       0111     11       


Q ss_pred             chhhHHHHHHHHHHHhccceEEEe-ecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEEE
Q 006854          557 VIDKSIQTAYIQAIRSAQHFIYIE-NQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARR  626 (628)
Q Consensus       557 ~~e~~I~~ay~~aI~~Ak~~IyIe-nqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~  626 (628)
                        ..-=.+|+++.|..|++||||. .+||=+..+      .+.  ++.- +|=++|.+|+-+|++||..|-
T Consensus       274 --rt~DL~ail~~i~~A~~fv~isVMdY~Ps~~y------~k~--~~fw-~iDdaiR~aa~RgV~vR~lvs  333 (456)
T KOG3603|consen  274 --RTWDLEAILNTIDEAQKFVYISVMDYFPSTIY------SKN--HRFW-EIDDAIRRAAVRGVKVRLLVS  333 (456)
T ss_pred             --CchhHHHHHHHHHHHhhheeeeehhccchhee------ecC--cchh-hhhHHHHHHhhcceEEEEEEe
Confidence              2334689999999999999996 677755443      222  3333 889999999999999999874

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.71  E-value=1.5e-07  Score=105.99  Aligned_cols=96  Identities=24%  Similarity=0.500  Sum_probs=78.3

Q ss_pred             CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCcee
Q 006854           80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI  153 (628)
Q Consensus        80 ~dpyv~v~l~~----~~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~  153 (628)
                      .||||+|.+.+    ....+|+++.++.||+|||+|.|.+..+ ..-|.|.|+|.|... ++++|+..+|+..|..|-  
T Consensus       479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy--  556 (581)
T PLN02222        479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI--  556 (581)
T ss_pred             CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc--
Confidence            79999999853    3456999999999999999999997766 456799999998876 899999999999999884  


Q ss_pred             EEEEEccCCCCCCCCCCceEEEEEEE
Q 006854          154 SRWYDIIAPSGSPPKPGASIQLELKF  179 (628)
Q Consensus       154 ~~w~~L~~~~~~~~~~~g~i~l~l~y  179 (628)
                       +.++|.+..|.+... ..|.+.+.|
T Consensus       557 -R~V~L~~~~g~~l~~-a~Lfv~~~~  580 (581)
T PLN02222        557 -RAFPLHSRKGEKYKS-VKLLVKVEF  580 (581)
T ss_pred             -ceEEccCCCcCCCCC-eeEEEEEEe
Confidence             568898887775433 466666654

>PLN02228 Phosphoinositide phospholipase C

Probab=98.69  E-value=2.1e-07  Score=104.46  Aligned_cols=99  Identities=22%  Similarity=0.365  Sum_probs=81.9

Q ss_pred             CCcEEEEEECC----eeeeeeccccCCCCCeE-eeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCce
Q 006854           80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVW-NEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL  152 (628)
Q Consensus        80 ~dpyv~v~l~~----~~~~kT~v~~~~~~P~w-ne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~  152 (628)
                      .||||+|.+.+    ....+|+++.++.||.| ||+|.|++..+ ..-|.|.|+|.|..+ ++++|+..+|+..|..|- 
T Consensus       458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY-  536 (567)
T PLN02228        458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV-  536 (567)
T ss_pred             CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe-
Confidence            79999999854    34469999999999999 99999997776 456799999999776 899999999999999874 


Q ss_pred             eEEEEEccCCCCCCCCCCceEEEEEEEeec
Q 006854          153 ISRWYDIIAPSGSPPKPGASIQLELKFTPC  182 (628)
Q Consensus       153 ~~~w~~L~~~~~~~~~~~g~i~l~l~y~p~  182 (628)
                        +.++|.+..|.... ..+|.+.+.+.+.
T Consensus       537 --R~VpL~~~~G~~l~-~atLfv~~~~~~~  563 (567)
T PLN02228        537 --RAVRLHDRAGKAYK-NTRLLVSFALDPP  563 (567)
T ss_pred             --eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence              56889888887543 3688888887764

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.69  E-value=8e-08  Score=84.32  Aligned_cols=66  Identities=29%  Similarity=0.402  Sum_probs=58.1

Q ss_pred             CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEecccccccc
Q 006854           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT  149 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~  149 (628)
                      +||||.|.+++..+.||++   +.||.|||+|.|++. ....+++.|||+..-..-.||..-+.+++|..
T Consensus        23 ~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~E   88 (109)
T cd08689          23 PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAE   88 (109)
T ss_pred             CCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCCeecceeeehhhHHHHHH
Confidence            8999999999987889988   489999999999995 47789999999876667799999999988773

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]

Probab=98.69  E-value=7.6e-08  Score=106.32  Aligned_cols=152  Identities=18%  Similarity=0.231  Sum_probs=103.7

Q ss_pred             eecCCCCcc--CCcch--HHHHHHHHHhccceEEEEE-EEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEE
Q 006854          230 IPLDGGKLY--KPGTC--WEDICHAISEAHHLIYIVG-WSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLL  304 (628)
Q Consensus       230 ~~l~~g~~y--~~~~~--f~~l~~aI~~Ak~sI~i~~-w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrIL  304 (628)
                      +.+.+||.+  ....+  -..++.+|.+|+++|+|++ |.+         +.        ..+.++|+.++++||+|+||
T Consensus       254 ~~~~~~P~~~~~~~~~~~~~~~~~~i~~A~~~i~i~~pYf~---------~~--------~~~~~al~~a~~~Gv~V~ii  316 (438)
T COG1502         254 QVLSSGPDKGLGSELIELNRLLLKAINSARESILIATPYFV---------PD--------RELLAALKAAARRGVDVRII  316 (438)
T ss_pred             EEEecCCccccchhhhhHHHHHHHHHHhhceEEEEEcCCcC---------CC--------HHHHHHHHHHHhcCCEEEEE
Confidence            445555555  22232  2679999999999999997 644         11        57899999999999999999


Q ss_pred             EecCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcce
Q 006854          305 VWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKI  384 (628)
Q Consensus       305 vwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~  384 (628)
                      + +..+.....      .+........+.+.+.|+++..   ++..             ...|.|++|||++        
T Consensus       317 ~-~~~~~~d~~------~~~~~~~~~~~~l~~~gv~i~~---~~~g-------------~~lH~K~~iiD~~--------  365 (438)
T COG1502         317 I-PSLGANDSA------IVHAAYRAYLKELLEAGVKVYE---YPGG-------------AFLHSKVMIIDDR--------  365 (438)
T ss_pred             e-CCCCCCChH------HHHHHHHHHHHHHHHhCCEEEE---ecCC-------------CcceeeEEEEcCC--------
Confidence            7 743211100      0000123456667789999863   2210             2349999999998        


Q ss_pred             EEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhcc
Q 006854          385 TAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK  461 (628)
Q Consensus       385 vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~  461 (628)
                      ++++|+.|++..-+..               +                 ..+.+.|+.+ .+.++...|...|..+..
T Consensus       366 ~~~vGS~N~~~rS~~l---------------N-----------------~E~~~~i~d~~~~~~~~~~~~~~~~~s~~  411 (438)
T COG1502         366 TVLVGSANLDPRSLRL---------------N-----------------FEVGLVIEDPELALKLRREFEADLARSKR  411 (438)
T ss_pred             EEEEeCCcCCHhHHHH---------------h-----------------hhheeEEeCHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999943321               0                 2556777777 888999999977766543

>KOG3603 consensus Predicted phospholipase D [General function prediction only]

Probab=98.65  E-value=3.4e-07  Score=97.42  Aligned_cols=170  Identities=16%  Similarity=0.264  Sum_probs=106.3

Q ss_pred             ecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCC
Q 006854          231 PLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKT  310 (628)
Q Consensus       231 ~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~g  310 (628)
                      +...|++-    =+++|++.|.+|+++|+|..-...|......+..       -..|.++|++||-|||+||+|+ -...
T Consensus       269 ~~~~grt~----DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~~~-------fw~iDdaiR~aa~RgV~vR~lv-s~~~  336 (456)
T KOG3603|consen  269 LNPSGRTW----DLEAILNTIDEAQKFVYISVMDYFPSTIYSKNHR-------FWEIDDAIRRAAVRGVKVRLLV-SCWK  336 (456)
T ss_pred             CCCCCCch----hHHHHHHHHHHHhhheeeeehhccchheeecCcc-------hhhhhHHHHHHhhcceEEEEEE-eccC
Confidence            44566643    4889999999999999998766677654443321       2489999999999999999998 3332


Q ss_pred             ccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEcc
Q 006854          311 SHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGG  390 (628)
Q Consensus       311 s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG  390 (628)
                       +.-+  ...+++.- ...+...+++-.|+|.+.- -|...  .   ........+|.|++|-+.         .||+|.
T Consensus       337 -~~~~--~m~~~L~S-Lq~l~~~~~~~~iqvk~f~-VP~~~--~---~~ip~~Rv~HnKymVTe~---------aayIGT  397 (456)
T KOG3603|consen  337 -HSEP--SMFRFLRS-LQDLSDPLENGSIQVKFFI-VPQTN--I---EKIPFARVNHNKYMVTES---------AAYIGT  397 (456)
T ss_pred             -CCCc--hHHHHHHH-HHHhcCccccCceEEEEEE-eCCCc--c---ccCchhhhccceeEEeec---------ceeeec
Confidence             1100  00000000 0111222345667766421 11110  0   022334688999999998         899999


Q ss_pred             ccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeee---EeCHHHHHHHHHHHHHHhhhcc
Q 006854          391 IDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR---LDGPAAYDVLINFEQRWRKATK  461 (628)
Q Consensus       391 ~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~---l~Gpav~~l~~~F~~rW~~~~~  461 (628)
                      .|.+-+||..-                        .+.      -+-++   -.|+++.+|..+|.++|+....
T Consensus       398 SNws~dYf~~T------------------------aG~------~ivv~q~~~~~~~~~ql~~vFeRdW~S~Ys  441 (456)
T KOG3603|consen  398 SNWSGDYFTST------------------------AGT------AIVVRQTPHKGTLVSQLKAVFERDWNSTYS  441 (456)
T ss_pred             cCCCccceecc------------------------Cce------EEEEecCCCCCcHHHHHHHHHhhccccccc
Confidence            99999888431                        000      00011   3578999999999999987543

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.65  E-value=1.3e-07  Score=106.76  Aligned_cols=98  Identities=27%  Similarity=0.513  Sum_probs=79.2

Q ss_pred             CCcEEEEEECC----eeeeeec-cccCCCCCeEeeEEEEEecCCC-ceEEEEEEEcCCCC-CeeeEEEeccccccccCce
Q 006854           80 SDPYVTVVVPQ----ATVARTR-VLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL  152 (628)
Q Consensus        80 ~dpyv~v~l~~----~~~~kT~-v~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~  152 (628)
                      .||||.|.+-+    ....+|+ |..++.||.|+|+|.|++..+. .-|.|.|+|.|..+ |+|+|+..+|+..|..|- 
T Consensus       641 ~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy-  719 (746)
T KOG0169|consen  641 SDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY-  719 (746)
T ss_pred             CCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce-
Confidence            78998888754    4456899 5667999999999999988875 55799999999999 999999999999999884 


Q ss_pred             eEEEEEccCCCCCCCCCCceEEEEEEEee
Q 006854          153 ISRWYDIIAPSGSPPKPGASIQLELKFTP  181 (628)
Q Consensus       153 ~~~w~~L~~~~~~~~~~~g~i~l~l~y~p  181 (628)
                        +-++|.+..|... ...+|.+.+++.+
T Consensus       720 --RhVpL~~~~G~~~-~~asLfv~i~~~~  745 (746)
T KOG0169|consen  720 --RHVPLLSREGEAL-SSASLFVRIAIVE  745 (746)
T ss_pred             --eeeeecCCCCccc-cceeEEEEEEEec
Confidence              4577877777644 2357777777654

>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs)

Probab=98.60  E-value=9.2e-09  Score=68.71  Aligned_cols=26  Identities=58%  Similarity=0.994  Sum_probs=17.6

Q ss_pred             cccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854          363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG  396 (628)
Q Consensus       363 ~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~  396 (628)
                      .++||||++|||++        +||+||+|++++
T Consensus         2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~   27 (28)
T PF00614_consen    2 GGSHHQKFVVVDDR--------VAFVGGANLCDG   27 (28)
T ss_dssp             TBEE---EEEETTT--------EEEEE---SSHH
T ss_pred             CcceeeEEEEEcCC--------EEEECceecCCC
Confidence            36899999999998        999999999874

PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.59  E-value=1.4e-08  Score=112.34  Aligned_cols=95  Identities=19%  Similarity=0.411  Sum_probs=78.7

Q ss_pred             eeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCC-------------------------------------CCe
Q 006854           94 ARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVF-------------------------------------GAQ  135 (628)
Q Consensus        94 ~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~-------------------------------------~~~  135 (628)
                      .-|+|+++|+||.|+|+|.|.+.+. ...+.+.+||+|.-                                     .|+
T Consensus       179 katsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD  258 (1103)
T KOG1328|consen  179 KATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD  258 (1103)
T ss_pred             hhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence            3588999999999999999999886 56789999998621                                     168


Q ss_pred             eeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEEEEEEeecCCCCcccc
Q 006854          136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQ  190 (628)
Q Consensus       136 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p~~~~~~~~~  190 (628)
                      |+|.+.||+.++... ..+.||.| .+.....+..|.++|+|....++.....+.
T Consensus       259 FLGciNipl~EiP~~-Gld~WFkL-epRS~~S~VqG~~~LklwLsT~e~~~a~se  311 (1103)
T KOG1328|consen  259 FLGCINIPLAEIPPD-GLDQWFKL-EPRSDKSKVQGQVKLKLWLSTKEEGRAGSE  311 (1103)
T ss_pred             cccccccchhcCCcc-hHHHHhcc-CcccccccccceEEEEEEEeeeccccccCc
Confidence            999999999999843 57899999 566667788999999999998876665443

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.54  E-value=2.8e-08  Score=110.13  Aligned_cols=91  Identities=22%  Similarity=0.406  Sum_probs=81.5

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-----
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-----   90 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-----   90 (628)
                      +.+|.|.|+-|+++.+.|.+|.                                          +||||.|.+.+     
T Consensus       946 ~q~L~veVlhA~diipLD~NGl------------------------------------------SDPFVviEl~P~~~fp  983 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGL------------------------------------------SDPFVVIELIPKFRFP  983 (1103)
T ss_pred             ccchhhhhhccccccccCCCCC------------------------------------------CCCeEEEEeccccccc
Confidence            4569999999999999999987                                          99999999977     


Q ss_pred             -eeeeeeccccCCCCCeEeeEEEEEecCC-----CceEEEEEEEcCCCC-CeeeEEEeccccccc
Q 006854           91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA  148 (628)
Q Consensus        91 -~~~~kT~v~~~~~~P~wne~f~~~~~~~-----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~  148 (628)
                       -...+|+|+++|+||+|+|+|.|.++.+     ...|.|+|+|+|-++ ++|-|++.+.|..+.
T Consensus       984 ~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen  984 AVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             cchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence             3456999999999999999999999885     345899999999998 999999999998876

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.45  E-value=7.4e-07  Score=100.08  Aligned_cols=103  Identities=24%  Similarity=0.402  Sum_probs=76.9

Q ss_pred             CCcEEEEEECC-----eeeeeeccccCCCCCeEe-eEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCc
Q 006854           80 SDPYVTVVVPQ-----ATVARTRVLKNSQEPVWN-EHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE  151 (628)
Q Consensus        80 ~dpyv~v~l~~-----~~~~kT~v~~~~~~P~wn-e~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~  151 (628)
                      +.|||+|.+-+     ...++|.|..+++||+|| |.|+|.+..| ..-|.|.|++.|+++ ..|||++..|+..|..|-
T Consensus      1085 ~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf 1164 (1267)
T KOG1264|consen 1085 ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF 1164 (1267)
T ss_pred             cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc
Confidence            77999999854     333455666679999999 9999999887 466899999999999 589999999999999774


Q ss_pred             eeEEEEEccCCCCCCCCCCceEEEEEEEeecCCCC
Q 006854          152 LISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP  186 (628)
Q Consensus       152 ~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p~~~~~  186 (628)
                         +-++| .+.-+..-...+|.+.+...|.....
T Consensus      1165 ---RsVpL-kN~ySEdlELaSLLv~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1165 ---RSVPL-KNGYSEDLELASLLVFIEMRPVLESE 1195 (1267)
T ss_pred             ---eeeec-ccCchhhhhhhhheeeeEeccccCcc
Confidence               33556 33333222345677777777755443

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.23  E-value=1e-06  Score=102.33  Aligned_cols=109  Identities=21%  Similarity=0.425  Sum_probs=91.4

Q ss_pred             CceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEE
Q 006854            9 KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV   88 (628)
Q Consensus         9 ~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l   88 (628)
                      ++...|-+|+|.|-|.-+++|+-...                             |.+             +||||+.+|
T Consensus      1516 ~LsIsY~~~~LtImV~H~K~L~~Lqd-----------------------------g~~-------------P~pyVK~YL 1553 (1639)
T KOG0905|consen 1516 KLSISYNNGTLTIMVMHAKGLALLQD-----------------------------GQD-------------PDPYVKTYL 1553 (1639)
T ss_pred             EEEEEEcCceEEEEhhhhcccccccC-----------------------------CCC-------------CCcceeEEe
Confidence            35688999999999999999964332                             222             999999999


Q ss_pred             CC----eeeeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEc
Q 006854           89 PQ----ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        89 ~~----~~~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      .+    ..+.||+|+.+|.+|.|||..... ++..   ...|.++||..+.+. +.++|.+.|+|..+....+..+||.|
T Consensus      1554 lPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1554 LPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred             cCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence            76    556799999999999999998876 3332   467999999998888 89999999999999977777799999

>PRK09428 pssA phosphatidylserine synthase; Provisional

Probab=98.14  E-value=2.2e-05  Score=87.01  Aligned_cols=141  Identities=16%  Similarity=0.124  Sum_probs=90.9

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~  320 (628)
                      ......+..+|.+|+++|+|+    +|  ||.  +.        ..+.++|+.++++||+|+||+ .+..+...  +...
T Consensus       250 ~~l~~~~~~li~~A~~~i~I~----TP--YF~--p~--------~~l~~~L~~a~~rGv~V~Ii~-~~~~andf--y~~~  310 (451)
T PRK09428        250 NLLNKTIFHLMASAEQKLTIC----TP--YFN--LP--------AILVRNIIRLLRRGKKVEIIV-GDKTANDF--YIPP  310 (451)
T ss_pred             hHHHHHHHHHHhccCcEEEEE----eC--CcC--CC--------HHHHHHHHHHHhcCCcEEEEc-CCcccccC--cCCC
Confidence            456778899999999999988    45  444  21        579999999999999999997 54422211  1111


Q ss_pred             C--ccc-CChHHHHh-----------hhccCC---ceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcc
Q 006854          321 G--VMA-THDEETKK-----------FFKHSS---VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRK  383 (628)
Q Consensus       321 ~--~~~-~~~~~~~~-----------~l~~~g---v~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~  383 (628)
                      +  ++. .......+           .+.++|   |++..   ++              .+..|.|.++||++       
T Consensus       311 d~~~~~~~~~py~ye~~lr~f~~~~~~li~~G~l~v~i~~---~~--------------~~~~HaK~i~vD~~-------  366 (451)
T PRK09428        311 DEPFKIIGALPYLYEINLRRFAKRLQYYIDNGQLNVRLWK---DG--------------DNSYHLKGIWVDDR-------  366 (451)
T ss_pred             ccHHHHhhhhHHHHHHhhhhhHHHhhhhhhcCcceEEEEe---cC--------------CCcceEEEEEEeCC-------
Confidence            0  000 00011111           223444   55442   22              23459999999998       


Q ss_pred             eEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhh
Q 006854          384 ITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRK  458 (628)
Q Consensus       384 ~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~  458 (628)
                       ++++||.|+...-|.-               |                 ..+.+.|..|. .+|...|.+....
T Consensus       367 -~~~iGS~Nld~RS~~l---------------n-----------------~E~~l~i~d~~-~~l~~~~~~E~~~  407 (451)
T PRK09428        367 -WMLLTGNNLNPRAWRL---------------D-----------------LENALLIHDPK-QELAEQREKELEL  407 (451)
T ss_pred             -EEEEcCCCCChhHhhh---------------c-----------------ccceEEEECCh-HHHHHHHHHHHHH
Confidence             9999999999955532               0                 14566777776 7888888887754

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=97.98  E-value=9.7e-06  Score=90.66  Aligned_cols=104  Identities=16%  Similarity=0.355  Sum_probs=81.6

Q ss_pred             CCcEEEEEECC---eeeeeeccccCCCCCeEeeEEEEEecCC----------------CceEEEEEEE-cCCCC-CeeeE
Q 006854           80 SDPYVTVVVPQ---ATVARTRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKD-DDVFG-AQIIG  138 (628)
Q Consensus        80 ~dpyv~v~l~~---~~~~kT~v~~~~~~P~wne~f~~~~~~~----------------~~~l~i~v~d-~d~~~-~~~iG  138 (628)
                      +|||+++...+   ....+|++++.+.+|.|+|.|.|.+...                ...|.+++|+ .+... +.|+|
T Consensus       151 ~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlG  230 (800)
T KOG2059|consen  151 CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLG  230 (800)
T ss_pred             CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhce
Confidence            99999999754   2336999999999999999999987765                2357889998 45555 89999


Q ss_pred             EEeccccccccCceeEEEEEccCCC-CC---CCCCCceEEEEEEEeecC
Q 006854          139 TAAIPAHTIATGELISRWYDIIAPS-GS---PPKPGASIQLELKFTPCD  183 (628)
Q Consensus       139 ~~~i~l~~l~~~~~~~~w~~L~~~~-~~---~~~~~g~i~l~l~y~p~~  183 (628)
                      ++.+|+..+.....-..||.|...+ |+   .....|.+++.++|+...
T Consensus       231 evrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~  279 (800)
T KOG2059|consen  231 EVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDH  279 (800)
T ss_pred             eEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeece
Confidence            9999999888666678899995222 22   344568999999988755

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.91  E-value=1.1e-05  Score=73.15  Aligned_cols=80  Identities=28%  Similarity=0.488  Sum_probs=64.0

Q ss_pred             CCcEEEEEEC---CeeeeeeccccCCCCCeEeeEEEEEecC--------C--------CceEEEEEEEcCCC--------
Q 006854           80 SDPYVTVVVP---QATVARTRVLKNSQEPVWNEHFNIPLAH--------P--------LSNLEIQVKDDDVF--------  132 (628)
Q Consensus        80 ~dpyv~v~l~---~~~~~kT~v~~~~~~P~wne~f~~~~~~--------~--------~~~l~i~v~d~d~~--------  132 (628)
                      .++||++.+.   +.+..+|+++.++..|+|+.++.|+.+-        .        ...+.++||+...-        
T Consensus        33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~  112 (143)
T cd08683          33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI  112 (143)
T ss_pred             cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence            7899999853   3566799999999999999999998662        1        35689999987533        


Q ss_pred             ---CCeeeEEEecccccccc-CceeEEEEEc
Q 006854          133 ---GAQIIGTAAIPAHTIAT-GELISRWYDI  159 (628)
Q Consensus       133 ---~~~~iG~~~i~l~~l~~-~~~~~~w~~L  159 (628)
                         +|-.+|++.||+.+|.. ...+.+||++
T Consensus       113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683         113 ETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             CcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence               25689999999999873 4567899985

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function

Probab=97.77  E-value=0.00018  Score=74.26  Aligned_cols=139  Identities=19%  Similarity=0.172  Sum_probs=90.7

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~  320 (628)
                      ..+-+.+.+.|.+|++.|-|..=.|+.       .         .-|.++|.++-+|||-|+||+ |..+..        
T Consensus       133 p~IKE~vR~~I~~A~kVIAIVMD~FTD-------~---------dIf~DLleAa~kR~VpVYiLL-D~~~~~--------  187 (284)
T PF07894_consen  133 PHIKEVVRRMIQQAQKVIAIVMDVFTD-------V---------DIFCDLLEAANKRGVPVYILL-DEQNLP--------  187 (284)
T ss_pred             CCHHHHHHHHHHHhcceeEEEeecccc-------H---------HHHHHHHHHHHhcCCcEEEEe-chhcCh--------
Confidence            457889999999999999999877753       1         345565555559999999998 887532        


Q ss_pred             CcccCChHHHHhhhccCCce--------EEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEcccc
Q 006854          321 GVMATHDEETKKFFKHSSVN--------CVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGID  392 (628)
Q Consensus       321 ~~~~~~~~~~~~~l~~~gv~--------~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~n  392 (628)
                              .+.++..+.+|+        |+.-.     +..+....-.+....-|+|+++||+.        .+++|+-=
T Consensus       188 --------~Fl~Mc~~~~v~~~~~~nmrVRsv~-----G~~y~~rsg~k~~G~~~eKF~lvD~~--------~V~~GSYS  246 (284)
T PF07894_consen  188 --------HFLEMCEKLGVNLQHLKNMRVRSVT-----GCTYYSRSGKKFKGQLKEKFMLVDGD--------KVISGSYS  246 (284)
T ss_pred             --------HHHHHHHHCCCChhhcCCeEEEEec-----CCeeecCCCCeeeCcccceeEEEecc--------cccccccc
Confidence                    233333333333        22100     00011111123446779999999998        88999876


Q ss_pred             CCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHh
Q 006854          393 LCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWR  457 (628)
Q Consensus       393 i~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~  457 (628)
                      +++.-.  .-|                              +-+...++|.+|....+.|..-..
T Consensus       247 FtWs~~--~~~------------------------------r~~~~~~tGq~Ve~FD~EFR~LyA  279 (284)
T PF07894_consen  247 FTWSSS--RVH------------------------------RNLVTVLTGQIVESFDEEFRELYA  279 (284)
T ss_pred             eeeccc--ccc------------------------------cceeEEEeccccchHhHHHHHHHH
Confidence            655211  111                              246789999999999999987653

Some members of this family are annotated as being potential phospholipases but no literature was found to support this.

>smart00155 PLDc Phospholipase D

Probab=97.61  E-value=5.3e-05  Score=50.75  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=22.3

Q ss_pred             ccCcceEEEEecCCCCCCcceEEEEccccCCC
Q 006854          364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCD  395 (628)
Q Consensus       364 ~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~  395 (628)
                      .++|+|++|||++        .+++||.|++.
T Consensus         3 ~~~H~K~~v~D~~--------~~~iGs~N~~~   26 (28)
T smart00155        3 GVLHTKLMIVDDE--------IAYIGSANLDG   26 (28)
T ss_pred             CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence            4679999999998        99999999987

Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.00011  Score=76.02  Aligned_cols=103  Identities=23%  Similarity=0.331  Sum_probs=82.2

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~   91 (628)
                      -.-|.|+++++.+|..+|.++.                                          +||||...+.+    .
T Consensus       232 ~~~l~vt~iRc~~l~ssDsng~------------------------------------------sDpyvS~~l~pdv~~~  269 (362)
T KOG1013|consen  232 TPGLIVTIIRCSHLASSDSNGY------------------------------------------SDPYVSQRLSPDVGKK  269 (362)
T ss_pred             CCceEEEEEEeeeeeccccCCC------------------------------------------CCccceeecCCCcchh
Confidence            3458899999999999998887                                          99999999865    3


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP  162 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  162 (628)
                      -+.||.+.+++.+|+||++|.|.+.+.   ...+.|.|||.+.-+ .+++|-....  ..+.++...+|+.....
T Consensus       270 fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g--~~rr~~v~~h~gr~~~~  342 (362)
T KOG1013|consen  270 FKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLG--GYRRGEVHKHWGRCLFD  342 (362)
T ss_pred             hcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccc--ccccchhhcCccccccc
Confidence            346899999999999999999988874   457899999999886 7888865444  34556666777766433

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.00017  Score=75.92  Aligned_cols=109  Identities=22%  Similarity=0.379  Sum_probs=88.1

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~   91 (628)
                      .|+|+|.|++|++|........                                         .++|||+|++..    .
T Consensus       268 ~g~l~vEii~ar~l~~k~~~k~-----------------------------------------~~apyVkVYlL~~g~c~  306 (405)
T KOG2060|consen  268 KGDLEVEIIRARGLVVKPGSKS-----------------------------------------LPAPYVKVYLLENGFCI  306 (405)
T ss_pred             cCceeEEEEecccccccCCccc-----------------------------------------ccCceeEEEEcCCCcee
Confidence            4789999999999975432111                                         289999999865    4


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEE-cCCCC-CeeeEEEeccccccccCc-eeEEEEEccCCCCC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKD-DDVFG-AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS  165 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d-~d~~~-~~~iG~~~i~l~~l~~~~-~~~~w~~L~~~~~~  165 (628)
                      .+.+|+...++..|.+-....|.-.++..-|.++||- ..+.. +.|+|.+.+-++++.... ...+||+|+.....
T Consensus       307 ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsssl  383 (405)
T KOG2060|consen  307 AKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSSL  383 (405)
T ss_pred             cccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCccC
Confidence            4468999999999999999999988889999999995 44444 689999999999999776 88999999766543

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=7.3e-05  Score=77.42  Aligned_cols=129  Identities=22%  Similarity=0.279  Sum_probs=95.0

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~   91 (628)
                      ...+..+|.+|++|.+|+.++.                                          .|||+++.+++    .
T Consensus        92 ~~~~~~tl~~a~~lk~~~~~~~------------------------------------------~d~~~~~~llpga~kl  129 (362)
T KOG1013|consen   92 SRMLDTTLDRAKGLKPMDINGL------------------------------------------ADPYVKLHLLPGAGKL  129 (362)
T ss_pred             hhhcceeechhcccchhhhhhh------------------------------------------cchHHhhhcccchhhh
Confidence            3458899999999999998887                                          89999999876    3


Q ss_pred             eeeeeccccCCCCCeEeeEEEEE--ecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCce--eEEEEEccCCCC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIP--LAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL--ISRWYDIIAPSG  164 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~--~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~--~~~w~~L~~~~~  164 (628)
                      ...+|++..++.||.|+|+....  ....  ...+.+.|.|.+.+. ++++|+..+++..+.....  ..-|+.-.-+.+
T Consensus       130 ~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~  209 (362)
T KOG1013|consen  130 NSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSE  209 (362)
T ss_pred             hhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcc
Confidence            34689999999999999876655  2222  334678888888887 8999999999988875432  223443222211


Q ss_pred             C----CCCCCceEEEEEEEeecCCCC
Q 006854          165 S----PPKPGASIQLELKFTPCDKNP  186 (628)
Q Consensus       165 ~----~~~~~g~i~l~l~y~p~~~~~  186 (628)
                      .    .....|.|.++|.|..+....
T Consensus       210 rad~~~~E~rg~i~isl~~~s~~~~l  235 (362)
T KOG1013|consen  210 RADRDEDEERGAILISLAYSSTTPGL  235 (362)
T ss_pred             cccccchhhccceeeeeccCcCCCce
Confidence            1    235679999999998876555

>PF13918 PLDc_3: PLD-like domain

Probab=97.25  E-value=0.0012  Score=63.80  Aligned_cols=69  Identities=23%  Similarity=0.327  Sum_probs=51.7

Q ss_pred             CCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHh-hcCCEEEEEE
Q 006854          227 LPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLV  305 (628)
Q Consensus       227 ~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA-~rGV~VrILv  305 (628)
                      .|..+...|++..    .++++..|++|+++|||+.-.+-|..... .+..=|     ..|.++|++|| +|||+||+|+
T Consensus        71 SPp~~~~~gRT~D----ldAIl~~I~~A~~fI~IsVMdY~P~~~~~-~~~~YW-----P~ID~ALR~AA~~R~V~VRlLI  140 (177)
T PF13918_consen   71 SPPPFCPKGRTLD----LDAILSVIDSAKKFIYISVMDYLPTSRYS-KPNRYW-----PVIDDALRRAAIERGVKVRLLI  140 (177)
T ss_pred             CCcccCCCCCCcH----HHHHHHHHHhHhheEEEEEeecCCeeecC-CCCCcc-----hhHHHHHHHHHHHcCCeEEEEE
Confidence            4555666676552    68999999999999999888777744321 111113     57999999987 8999999998

>TIGR03705 poly_P_kin polyphosphate kinase 1

Probab=97.20  E-value=0.0017  Score=75.23  Aligned_cols=145  Identities=19%  Similarity=0.172  Sum_probs=94.7

Q ss_pred             eecCCCCccCCcchHHHHHHHHHhccc----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEE
Q 006854          230 IPLDGGKLYKPGTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV  305 (628)
Q Consensus       230 ~~l~~g~~y~~~~~f~~l~~aI~~Ak~----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILv  305 (628)
                      ..|..||......+...+.+.|.+|++    +|+|.+-.+      .  |         ..+.++|..|+++||+|++|+
T Consensus       492 ~~l~~~P~~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~l------~--D---------~~ii~aL~~As~aGV~V~Liv  554 (672)
T TIGR03705       492 KHLLVSPFTLRKRLLELIDREIENARAGKPARIIAKMNSL------V--D---------PDLIDALYEASQAGVKIDLIV  554 (672)
T ss_pred             HHHHhCcchHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC------C--C---------HHHHHHHHHHHHCCCeEEEEE
Confidence            456777877777788888889999998    999884432      1  1         589999999999999999997


Q ss_pred             ecCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceE
Q 006854          306 WDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT  385 (628)
Q Consensus       306 wD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~v  385 (628)
                       .+.=+.. ++..  |.             ..++.+.   .+-            +.... |-|+......     +...
T Consensus       555 -RGiCcL~-pgip--g~-------------sd~i~v~---siv------------~r~Le-h~rIy~f~~~-----~d~~  596 (672)
T TIGR03705       555 -RGICCLR-PGVP--GL-------------SENIRVR---SIV------------GRFLE-HSRIYYFGNG-----GEEK  596 (672)
T ss_pred             -ecccccC-CCCC--CC-------------CCCEEEE---EEh------------hHhhC-cCEEEEEeCC-----CCcE
Confidence             6653321 1111  10             1223332   111            11223 7888887543     1239


Q ss_pred             EEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHH-HHHHH-HHHHHHhhhcc
Q 006854          386 AFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAA-YDVLI-NFEQRWRKATK  461 (628)
Q Consensus       386 afvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav-~~l~~-~F~~rW~~~~~  461 (628)
                      +|+|+.|+...-++-                                -..+.+.|..|.. +.+.. .+...|++..+
T Consensus       597 ~~igSAn~m~Rnl~~--------------------------------r~E~~~~i~d~~~~~~l~~~il~~~l~Dn~k  642 (672)
T TIGR03705       597 VYISSADWMTRNLDR--------------------------------RVEVLFPIEDPTLKQRVLDEILEAYLADNVK  642 (672)
T ss_pred             EEEECCCCCCCcccc--------------------------------eEEEEEEEcCHHHHHHHHHHHHHHhCccccc
Confidence            999999998833321                                1478888888854 55556 78888876544

Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.0012  Score=73.19  Aligned_cols=80  Identities=23%  Similarity=0.325  Sum_probs=68.6

Q ss_pred             CCcEEEEEEC-C-----eeeeeeccccCCCCCeEeeEEEEEecCCC----ceEEEEEEEcCCCC-CeeeEEEeccccccc
Q 006854           80 SDPYVTVVVP-Q-----ATVARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA  148 (628)
Q Consensus        80 ~dpyv~v~l~-~-----~~~~kT~v~~~~~~P~wne~f~~~~~~~~----~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~  148 (628)
                      --|||++.+. +     ..++.|+.+.++-.|.+||+|.|.+....    -.|.|.|+|....+ |.++|.+.++|.++.
T Consensus      1145 FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1145 FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred             cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh
Confidence            5699999863 3     44567888889999999999999987753    35889999998888 899999999999999


Q ss_pred             cCceeEEEEEc
Q 006854          149 TGELISRWYDI  159 (628)
Q Consensus       149 ~~~~~~~w~~L  159 (628)
                      .......|++|
T Consensus      1225 ~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1225 DKGSCACWVPL 1235 (1283)
T ss_pred             hcCceeEeeec
Confidence            88888899999

>PRK05443 polyphosphate kinase; Provisional

Probab=97.09  E-value=0.0024  Score=74.32  Aligned_cols=142  Identities=16%  Similarity=0.150  Sum_probs=90.5

Q ss_pred             CCCccCCcchHHHHHHHHHhccc----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCC
Q 006854          234 GGKLYKPGTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK  309 (628)
Q Consensus       234 ~g~~y~~~~~f~~l~~aI~~Ak~----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~  309 (628)
                      -.|...+..+.+.+.++|.+|++    +|++.+-.+      .  |         ..+.++|..|+++||+|+||+ .+.
T Consensus       505 ~sP~~~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~l------~--d---------~~ii~aL~~As~~GV~V~liV-RGi  566 (691)
T PRK05443        505 VSPFTLRERLLELIDREIANARAGKPARIIAKMNSL------V--D---------PQIIDALYEASQAGVKIDLIV-RGI  566 (691)
T ss_pred             ecCccHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC------C--C---------HHHHHHHHHHHHCCCeEEEEE-ecc
Confidence            33455556777888889999998    999884432      1  1         589999999999999999997 665


Q ss_pred             CccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEc
Q 006854          310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIG  389 (628)
Q Consensus       310 gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvG  389 (628)
                      =+. .++..  |.             ..++.|.   .       ++.     -... |-|+...+..     +...+|+|
T Consensus       567 C~l-~pgip--g~-------------sd~i~v~---s-------~v~-----r~Le-h~rIy~f~~g-----d~~~~~iG  609 (691)
T PRK05443        567 CCL-RPGVP--GL-------------SENIRVR---S-------IVG-----RFLE-HSRIYYFGNG-----GDEEVYIS  609 (691)
T ss_pred             ccc-CCCCC--CC-------------CCCEEEH---H-------HHH-----HHHh-cCEEEEEeCC-----CCcEEEEE
Confidence            332 11111  00             1112221   0       110     1112 5677777432     11299999


Q ss_pred             cccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhccc
Q 006854          390 GIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKL  462 (628)
Q Consensus       390 G~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~~  462 (628)
                      +.|+...-++-                                -..+.+-|..| .++.+...|..+|....+.
T Consensus       610 SAn~d~Rsl~~--------------------------------r~Ev~~~i~d~~~~~~l~~~~~~~l~dn~ka  651 (691)
T PRK05443        610 SADWMPRNLDR--------------------------------RVEVLFPILDPRLKQRLLEILEIQLADNVKA  651 (691)
T ss_pred             CCCCCcccccc--------------------------------eEEEeEEEeCHHHHHHHHHHHHHHHhhhhhe
Confidence            99998843321                                15788888887 5777888899999876543

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.04  E-value=0.00037  Score=80.95  Aligned_cols=88  Identities=23%  Similarity=0.396  Sum_probs=75.6

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCee-ee
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VA   94 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~-~~   94 (628)
                      .-..+|.|.+|-+|.+.|.++.                                          +|||+++.++.+. .-
T Consensus       612 ~~LvrVyvv~A~~L~p~D~ng~------------------------------------------adpYv~l~lGk~~~~d  649 (1105)
T KOG1326|consen  612 KCLVRVYVVEAFSLQPSDGNGD------------------------------------------ADPYVKLLLGKKRTLD  649 (1105)
T ss_pred             eeeEEEEEEEeeeccccCCCCC------------------------------------------cCceeeeeeccchhhh
Confidence            3457799999999999888887                                          9999999998733 34


Q ss_pred             eeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEecccc
Q 006854           95 RTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAH  145 (628)
Q Consensus        95 kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~  145 (628)
                      ++.-+.+++||+|++-|.+...-+ ...++++|+|+|.++ |+.||+..+.|+
T Consensus       650 ~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLE  702 (1105)
T KOG1326|consen  650 RAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLE  702 (1105)
T ss_pred             hhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhh
Confidence            788889999999999998886665 456899999999998 999999999886

>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B

Probab=97.04  E-value=0.019  Score=60.94  Aligned_cols=138  Identities=18%  Similarity=0.220  Sum_probs=81.7

Q ss_pred             chHHHHHHHHHhcc-----ceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccc
Q 006854          242 TCWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG  316 (628)
Q Consensus       242 ~~f~~l~~aI~~Ak-----~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~  316 (628)
                      +-|..+.+-|++|-     .+|.++-|..         .       ....+.++|++||+.|=+|-+++  ..-..    
T Consensus        18 ~sf~~vv~fl~eAA~DP~V~aIk~TLYR~---------a-------~~S~iv~aLi~AA~nGK~Vtv~v--ELkAR----   75 (352)
T PF13090_consen   18 ESFDPVVDFLREAAEDPDVLAIKITLYRV---------A-------SNSPIVNALIEAAENGKQVTVLV--ELKAR----   75 (352)
T ss_dssp             B-TCHHHHHHHHHCC-TTEEEEEEEESSS-----------------TT-HHHHHHHHHHHTT-EEEEEE--STTSS----
T ss_pred             cccHHHHHHHHHHhcCCCccEEEEEEEec---------C-------CCCHHHHHHHHHHHcCCEEEEEE--EEecc----
Confidence            45777888888873     6777776643         2       13689999999999999999998  33111    


Q ss_pred             ccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854          317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG  396 (628)
Q Consensus       317 ~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~  396 (628)
                           +-+...-.+.+.|+++||+|.+  ..|+              +.-|-|+++|=-+..+ .-+..+++|-=|... 
T Consensus        76 -----FDEe~Ni~Wa~~Le~aGv~Viy--G~~g--------------lKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe-  132 (352)
T PF13090_consen   76 -----FDEENNIHWAKRLEEAGVHVIY--GVPG--------------LKVHAKICLIVRREGG-GLRRYAHLGTGNYNE-  132 (352)
T ss_dssp             -----STTCCCCCCCHHHHHCT-EEEE----TT---------------EE--EEEEEEEEETT-EEEEEEEEESS-SST-
T ss_pred             -----ccHHHHhHHHhhHHhcCeEEEc--CCCC--------------hhheeeEEEEEEEeCC-cEEEEEEEcCCCcCc-
Confidence                 1111122356779999999985  2222              2349999999554111 123466666544444 


Q ss_pred             CCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHH
Q 006854          397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQR  455 (628)
Q Consensus       397 r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~r  455 (628)
                                                     ....-+-|..+.-.-| .+.|+...|..-
T Consensus       133 -------------------------------~TAr~YtD~~l~Ta~~~i~~D~~~~F~~l  161 (352)
T PF13090_consen  133 -------------------------------KTARIYTDLSLFTADPEIGADVAKLFNYL  161 (352)
T ss_dssp             -------------------------------THCCCEEEEEEEE--HHHHHHHHHHHHHH
T ss_pred             -------------------------------cchhheecceeecCCHHHHHHHHHHHHHH
Confidence                                           1123577998888776 788888887644

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.03  E-value=0.00045  Score=73.42  Aligned_cols=98  Identities=15%  Similarity=0.303  Sum_probs=79.4

Q ss_pred             CCcEEEEEEC----CeeeeeeccccCCCCCeEeeEEEEEecCC------------CceEEEEEEEcCCCC--CeeeEEEe
Q 006854           80 SDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHP------------LSNLEIQVKDDDVFG--AQIIGTAA  141 (628)
Q Consensus        80 ~dpyv~v~l~----~~~~~kT~v~~~~~~P~wne~f~~~~~~~------------~~~l~i~v~d~d~~~--~~~iG~~~  141 (628)
                      .|-||++.+.    .....+|.+++.+.+|.|+|.|-+.+...            ...++|+++.+..|-  |.++|++.
T Consensus       388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n  467 (523)
T KOG3837|consen  388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN  467 (523)
T ss_pred             HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence            7788888763    24457999999999999999999988772            235799999988774  89999999


Q ss_pred             ccccccccCceeEEEEEccCCCCCCCCCCceEEEEEEEe
Q 006854          142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT  180 (628)
Q Consensus       142 i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~  180 (628)
                      +.|.-|.....+...++|.+...   ..+|.|.++++..
T Consensus       468 ikle~Len~cei~e~~~l~DGRK---~vGGkLevKvRiR  503 (523)
T KOG3837|consen  468 IKLEILENMCEICEYLPLKDGRK---AVGGKLEVKVRIR  503 (523)
T ss_pred             eeehhhhcccchhhceecccccc---ccCCeeEEEEEEe
Confidence            99999988778889999965432   3568999988853

>cd00138 PLDc Phospholipase D

Probab=97.01  E-value=0.0013  Score=63.23  Aligned_cols=55  Identities=18%  Similarity=0.160  Sum_probs=46.8

Q ss_pred             hhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       559 e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                      ...+.+.++.+|.+|++.|+|+++||.+..            .....+|.++|.+|.++|.+++|++
T Consensus        19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~~rGv~V~il~   73 (176)
T cd00138          19 GRSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAARRGVKVRILV   73 (176)
T ss_pred             cchHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHHHCCCEEEEEE
Confidence            467999999999999999999999998742            1123479999999999999999886

Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.

>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]

Probab=96.96  E-value=0.05  Score=61.56  Aligned_cols=136  Identities=21%  Similarity=0.257  Sum_probs=86.4

Q ss_pred             chHHHHHHHHHhccc-----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccc
Q 006854          242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG  316 (628)
Q Consensus       242 ~~f~~l~~aI~~Ak~-----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~  316 (628)
                      +.|+.+.+-|++|-.     .|-+.-|         |..       +...|.++|++||+.|-+|-+||  ..-..    
T Consensus       352 eSF~~Vv~fl~qAA~DP~VLAIKqTLY---------Rt~-------~dSpIV~ALi~AA~nGKqVtvlV--ELkAR----  409 (696)
T COG0855         352 ESFEPVVEFLRQAAADPDVLAIKQTLY---------RTS-------KDSPIVRALIDAAENGKQVTVLV--ELKAR----  409 (696)
T ss_pred             hhhHHHHHHHHHhhcCCCeEEEEEEEE---------ecC-------CCCHHHHHHHHHHHcCCeEEEEE--EEhhh----
Confidence            678889999999852     3444444         322       24689999999999999999998  22111    


Q ss_pred             ccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854          317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG  396 (628)
Q Consensus       317 ~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~  396 (628)
                           +-.+.+-.+.+.|+.+|++|.+  .++              .+.-|.|+++|=-+   ++++..-|+   -++.|
T Consensus       410 -----FDEE~NI~WAk~LE~AGvhVvy--G~~--------------glKtHAKm~lVvRr---E~~~lrrY~---HlGTG  462 (696)
T COG0855         410 -----FDEEANIHWAKRLERAGVHVVY--GVV--------------GLKTHAKMLLVVRR---EGGKLRRYV---HLGTG  462 (696)
T ss_pred             -----cChhhhhHHHHHHHhCCcEEEe--ccc--------------ceeeeeeEEEEEEe---cCCcEEEEE---EecCC
Confidence                 1112223467889999999985  222              23459999999554   233455555   23343


Q ss_pred             CCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHH
Q 006854          397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFE  453 (628)
Q Consensus       397 r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~  453 (628)
                      -|    |+.                       ...-+-|+++.-.-| .++|+...|.
T Consensus       463 NY----n~~-----------------------TAriYTD~sl~Tad~~i~~Dv~~lFn  493 (696)
T COG0855         463 NY----NPK-----------------------TARLYTDLSLLTADPEIGADVTDLFN  493 (696)
T ss_pred             CC----Ccc-----------------------ceeeeeechhccCCHHHHHHHHHHHH
Confidence            22    111                       112456887766665 7888888886

>PLN02964 phosphatidylserine decarboxylase

Probab=96.83  E-value=0.0021  Score=73.93  Aligned_cols=86  Identities=21%  Similarity=0.355  Sum_probs=69.3

Q ss_pred             CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCCCce-EEEEEEEcCCCC-CeeeEEEeccccccccCcee--EE
Q 006854           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI--SR  155 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~-l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~--~~  155 (628)
                      .|+|..+..-+.+++||.+.++|.||+|||...|.+.+.... ..|.|||.+.++ ++.+|.+++++.++...+..  .+
T Consensus        68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elke  147 (644)
T PLN02964         68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACE  147 (644)
T ss_pred             CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence            788888877777889999999999999999999998886544 599999999999 99999999988877754332  22


Q ss_pred             EEEccCCCCC
Q 006854          156 WYDIIAPSGS  165 (628)
Q Consensus       156 w~~L~~~~~~  165 (628)
                      -|.++++++.
T Consensus       148 aF~lfD~dgd  157 (644)
T PLN02964        148 SFDLLDPSSS  157 (644)
T ss_pred             HHHHHCCCCC
Confidence            3666666654

>PRK13912 nuclease NucT; Provisional

Probab=96.60  E-value=0.0045  Score=60.23  Aligned_cols=48  Identities=17%  Similarity=0.229  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       560 ~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                      ..+...++.+|.+|+++|+|+. |++++.                 .|+++|.+|.++|.++||++
T Consensus        32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~~-----------------~i~~aL~~Aa~RGV~VrIll   79 (177)
T PRK13912         32 KDALNKLVSLISNARSSIKIAI-YSFTHK-----------------DIAKALKSAAKRGVKISIIY   79 (177)
T ss_pred             HHHHHHHHHHHHhcccEEEEEE-EEEchH-----------------HHHHHHHHHHHCCCEEEEEE
Confidence            4678999999999999999996 666653                 79999999999999999986

>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]

Probab=96.35  E-value=0.052  Score=52.74  Aligned_cols=144  Identities=19%  Similarity=0.272  Sum_probs=100.8

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~  320 (628)
                      +.+.+++...|+.|++-..+..|+...              | -.-+.+.|..+..+||++|||- +...+..       
T Consensus        38 e~il~~Li~~l~k~~ef~IsVaFit~s--------------G-~sll~~~L~d~~~Kgvkgkilt-s~YlnfT-------   94 (198)
T COG3886          38 EKILPRLIDELEKADEFEISVAFITES--------------G-LSLLFDLLLDLVNKGVKGKILT-SDYLNFT-------   94 (198)
T ss_pred             hhHHHHHHHHHhcCCeEEEEEEEeeCc--------------c-HHHHHHHHHHHhcCCceEEEec-ccccCcc-------
Confidence            468999999999999988888887522              1 3578999999999999999996 7665443       


Q ss_pred             CcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCC
Q 006854          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (628)
Q Consensus       321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~  400 (628)
                           ++....+.+.-.+|+++++..               ....+|-|-.+.-.+     ..-.|++|+.|+++.-.-.
T Consensus        95 -----dP~al~~Ll~~~nve~r~~~~---------------~~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~  149 (198)
T COG3886          95 -----DPVALRKLLMLKNVELRVSTI---------------GSANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV  149 (198)
T ss_pred             -----CHHHHHHHHhhhccceEEEec---------------CccccccceeEEEec-----ceEEEEEccchhhhhhccc
Confidence                 244556666666688875321               123458888776443     2248999999999954422


Q ss_pred             CCCCCccCCcccccCCCCCCCCCCCCCCCCCCce-eeeeeEeCHHHHHHHHHHHHHHh-hhcc
Q 006854          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH-DLHCRLDGPAAYDVLINFEQRWR-KATK  461 (628)
Q Consensus       401 ~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWh-D~~~~l~Gpav~~l~~~F~~rW~-~~~~  461 (628)
                       .|                            .|- -+...-.|..|+++...|...|. ..+.
T Consensus       150 -n~----------------------------Ewn~k~s~~~~g~i~~~~k~~f~r~~~~~~t~  183 (198)
T COG3886         150 -NE----------------------------EWNLKVSSSKNGDIVKEVKVTFERQFQNKITP  183 (198)
T ss_pred             -CH----------------------------HHHhhhccccccchHHHHHHHHHHHHHhhccc
Confidence             11                            121 23344578999999999999997 4433

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=96.25  E-value=0.0032  Score=53.65  Aligned_cols=77  Identities=14%  Similarity=0.326  Sum_probs=56.2

Q ss_pred             CCcEEEEEE--CCeeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCCCeeeEEEeccccccccCceeE
Q 006854           80 SDPYVTVVV--PQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELIS  154 (628)
Q Consensus        80 ~dpyv~v~l--~~~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~  154 (628)
                      ..-|++-.+  +..-..||++...+.||+|.|+|.|.+...   ...|-|.|+. .+-+...||.+.+.++++-. ++.+
T Consensus        21 ~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~ge-eE~~   98 (103)
T cd08684          21 PTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLST-QETD   98 (103)
T ss_pred             CeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccCCH-HHhh
Confidence            445666543  444457999999999999999999986653   3457788887 33347899999999987763 3456


Q ss_pred             EEEE
Q 006854          155 RWYD  158 (628)
Q Consensus       155 ~w~~  158 (628)
                      +|.+
T Consensus        99 HW~e  102 (103)
T cd08684          99 HWLE  102 (103)
T ss_pred             hhhc
Confidence            7754

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=96.21  E-value=0.00089  Score=77.89  Aligned_cols=102  Identities=22%  Similarity=0.254  Sum_probs=78.3

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeee
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR   95 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~k   95 (628)
                      +..|++.|++|+.|..+++.+.                                          +|||..+.+.+.. ..
T Consensus       205 ~~~lR~yiyQar~L~a~dk~~~------------------------------------------sdp~a~v~f~~qs-~~  241 (1105)
T KOG1326|consen  205 HSPLRSYIYQARALGAPDKDDE------------------------------------------SDPDAAVEFCGQS-KE  241 (1105)
T ss_pred             hhhhHHHHHHHHhhcCCCcccC------------------------------------------CCchhhhhccccc-ce
Confidence            3446777888999988776655                                          9999999987755 48


Q ss_pred             eccccCCCCCeEeeEEEEE---ecC-------CCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccC
Q 006854           96 TRVLKNSQEPVWNEHFNIP---LAH-------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA  161 (628)
Q Consensus        96 T~v~~~~~~P~wne~f~~~---~~~-------~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~  161 (628)
                      |-++.+++||.|++...|.   +..       ....+.|+++|.+..+ ++++|.......-... .+...|+++..
T Consensus       242 T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r  317 (1105)
T KOG1326|consen  242 TEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR  317 (1105)
T ss_pred             eEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeec
Confidence            9999999999999998884   222       1245689999999988 9999998776553332 45678999853

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.91  E-value=0.036  Score=64.21  Aligned_cols=100  Identities=25%  Similarity=0.414  Sum_probs=76.1

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      +-+++.|+|+++.-|..++                                              ...||.|.+-+    
T Consensus       701 IA~t~sV~VISgqFLSdrk----------------------------------------------vgtyVEVdmfgLP~D  734 (1189)
T KOG1265|consen  701 IAATLSVTVISGQFLSDRK----------------------------------------------VGTYVEVDMFGLPTD  734 (1189)
T ss_pred             EEeeEEEEEEeeeeccccc----------------------------------------------cCceEEEEecCCCch
Confidence            4566899999999887643                                              45799998733    


Q ss_pred             --eeeeeeccccC-CCCCeEeeE-EEEE--ecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCC
Q 006854           91 --ATVARTRVLKN-SQEPVWNEH-FNIP--LAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG  164 (628)
Q Consensus        91 --~~~~kT~v~~~-~~~P~wne~-f~~~--~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  164 (628)
                        .+.+||++... +.||+|+|+ |.|.  +.+....|.|.|++..   .++||.-.+|+..|..|-   +.+.|.+..+
T Consensus       735 t~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg---gK~ig~RIlpvd~l~~GY---rhv~LRse~N  808 (1189)
T KOG1265|consen  735 TIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG---GKFIGQRILPVDGLNAGY---RHVCLRSESN  808 (1189)
T ss_pred             hhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC---CceeeeeccchhcccCcc---eeEEecCCCC
Confidence              34468887775 999999964 7886  5556778999999875   479999999999999874   4566766665


Q ss_pred             CC
Q 006854          165 SP  166 (628)
Q Consensus       165 ~~  166 (628)
                      ++
T Consensus       809 qp  810 (1189)
T KOG1265|consen  809 QP  810 (1189)
T ss_pred             Cc
Confidence            54

>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator

Probab=95.54  E-value=0.055  Score=54.99  Aligned_cols=50  Identities=30%  Similarity=0.304  Sum_probs=39.9

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEec
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD  307 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD  307 (628)
                      +.....+.+.|++|+++|+|+.|.  .   +            -..+.+.|++|.+|||+|.++++.
T Consensus         9 ~~I~~~i~elI~~Ae~eI~is~~~--~---~------------l~~l~~~L~~a~~rGV~V~li~~~   58 (233)
T PF11495_consen    9 ETILERIRELIENAESEIYISIPP--E---F------------LEELRDELEEAVDRGVKVKLIVFG   58 (233)
T ss_dssp             HHHHHHHHHHHHC-SSEEEEEE-G--G---G------------HHHHHHHHHHHHHTT-EEEEEESS
T ss_pred             HHHHHHHHHHHHHhheEEEEEcCH--H---H------------HHHHHHHHHHHHHCCCEEEEEEeC
Confidence            568899999999999999999871  1   1            157999999999999999999855

The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.

>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A

Probab=95.49  E-value=0.028  Score=50.65  Aligned_cols=42  Identities=19%  Similarity=0.339  Sum_probs=34.7

Q ss_pred             HHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          566 YIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       566 y~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                      ++++|.+|+++|+|.++||...                  +|.++|..+.++|.++++++
T Consensus         1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~~~~gv~v~ii~   42 (126)
T PF13091_consen    1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDAAKRGVKVRIIV   42 (126)
T ss_dssp             HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHHHHTT-EEEEEE
T ss_pred             CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHHHHCCCeEEEEE
Confidence            4689999999999999999443                  58999999999999999986

...

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.28  E-value=0.19  Score=53.80  Aligned_cols=104  Identities=15%  Similarity=0.226  Sum_probs=79.4

Q ss_pred             CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC--------CceEEEEEEEcCCC-C-CeeeEEEecccccc--
Q 006854           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVF-G-AQIIGTAAIPAHTI--  147 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~--------~~~l~i~v~d~d~~-~-~~~iG~~~i~l~~l--  147 (628)
                      ..-.+...++++. ..|-.+..+..|.||-.....+...        ..+|+++++..|.. + -+.||.+.++|...  
T Consensus        18 ~~~vv~a~~ng~~-l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~   96 (340)
T PF12416_consen   18 HPIVVEAKFNGES-LETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVV   96 (340)
T ss_pred             ccEEEEEEeCCce-eeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccc
Confidence            3457777888766 5788888899999998888876552        56799999998833 3 78999999999988  


Q ss_pred             -ccC--ceeEEEEEccCCCCCCCCCCceEEEEEEEeecCC
Q 006854          148 -ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDK  184 (628)
Q Consensus       148 -~~~--~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p~~~  184 (628)
                       ..+  .....||+|++.+++-.+..-+|+|.|.......
T Consensus        97 ~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~  136 (340)
T PF12416_consen   97 PQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK  136 (340)
T ss_pred             ccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence             544  4567899998885554455678888888766544

>PLN02352 phospholipase D epsilon

Probab=95.17  E-value=0.043  Score=63.97  Aligned_cols=62  Identities=21%  Similarity=0.258  Sum_probs=39.0

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCC----CCcHHHHHHHHhh--cCCEEEEEE
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGG----DLTLGELLKYKSE--EGVRVLLLV  305 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~----~~~l~~~L~~aA~--rGV~VrILv  305 (628)
                      .++..+.++||++||+.|||+.=-|....+.+..+..   .|.    +..|.+.|.+|.+  ++-+|.|++
T Consensus       452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~---~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi  519 (758)
T PLN02352        452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNH---CGCTNLIPIEIALKIASKIRAKERFAVYILI  519 (758)
T ss_pred             hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccc---cchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            6799999999999999999974333222122211110   010    1367777777654  578888887

>PLN03008 Phospholipase D delta

Probab=94.82  E-value=0.034  Score=65.21  Aligned_cols=73  Identities=18%  Similarity=0.159  Sum_probs=40.7

Q ss_pred             eecCCCCccCC-cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCC----CCcHHHHHHHHh--hcCCEEE
Q 006854          230 IPLDGGKLYKP-GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGG----DLTLGELLKYKS--EEGVRVL  302 (628)
Q Consensus       230 ~~l~~g~~y~~-~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~----~~~l~~~L~~aA--~rGV~Vr  302 (628)
                      ..|.+|+...- ..+..+.+++|++|++.|||+.=-|....+.+.....   .|.    ...|...|.+|.  .++-+|+
T Consensus       554 ~~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~---~~~~n~I~~eia~kI~~ki~~~e~f~V~  630 (868)
T PLN03008        554 QHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRD---AGADNLIPMELALKIVSKIRAKERFAVY  630 (868)
T ss_pred             hccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccc---cccccchhHHHHHHHHHHHhCCCCCEEE
Confidence            33444443322 3467899999999999999974333222111110000   111    134555665544  5688898


Q ss_pred             EEE
Q 006854          303 LLV  305 (628)
Q Consensus       303 ILv  305 (628)
                      |++
T Consensus       631 IVi  633 (868)
T PLN03008        631 VVI  633 (868)
T ss_pred             EEE
Confidence            887

>PLN02270 phospholipase D alpha

Probab=94.80  E-value=0.057  Score=63.25  Aligned_cols=149  Identities=16%  Similarity=0.135  Sum_probs=74.4

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccC-CCCCCCCC----CCcHHHHHHHHh--hcCCEEEEEEecCCCccC
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQ-TRPLPRGG----DLTLGELLKYKS--EEGVRVLLLVWDDKTSHD  313 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~-~~~~~~g~----~~~l~~~L~~aA--~rGV~VrILvwD~~gs~~  313 (628)
                      .++..+.+.||++|+++|||+.=-|....+-+..+ -.+...|.    ...|...|++|.  .++-+|+|++ ..... .
T Consensus       498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi-P~~pe-G  575 (808)
T PLN02270        498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV-PMWPE-G  575 (808)
T ss_pred             hHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE-CCCCC-C
Confidence            67899999999999999999743332221111100 00000111    134555566644  4688999987 33211 1


Q ss_pred             ccccc--------CCCcccCChHHHHhhhccCCceE----E---eccC----------CCCC----ccch-hhhcccccc
Q 006854          314 KLGVK--------TPGVMATHDEETKKFFKHSSVNC----V---LAPR----------YASS----KLSY-FKQQIVGTI  363 (628)
Q Consensus       314 ~~~~~--------~~~~~~~~~~~~~~~l~~~gv~~----~---~~~~----------~~~~----~~~~-~~~~~~~~~  363 (628)
                      .+...        ..-.|...-....+.|+.+|+..    +   ++..          .|..    .... ..+...+..
T Consensus       576 ~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~  655 (808)
T PLN02270        576 IPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFM  655 (808)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhcccee
Confidence            11000        00011111233456677776631    1   1100          0100    0000 000000112


Q ss_pred             ccCcceEEEEecCCCCCCcceEEEEccccCCCCCCC
Q 006854          364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD  399 (628)
Q Consensus       364 ~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d  399 (628)
                      .--|.|++|||++        ++.+|+.||.+..++
T Consensus       656 I~vH~K~~ivDd~--------~~~iGSaN~n~rS~~  683 (808)
T PLN02270        656 IYVHTKMMIVDDE--------YIIIGSANINQRSMD  683 (808)
T ss_pred             EEEeeeEEEEcCC--------EEEEecccccccccc
Confidence            3459999999998        999999999996665

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=94.76  E-value=0.054  Score=60.45  Aligned_cols=83  Identities=27%  Similarity=0.402  Sum_probs=60.8

Q ss_pred             CCcEEEEEEC--C---eeeeeeccccCCCCCeEeeEEEEEecC-----CCceEEEEEEEcCCCC-CeeeEEEeccccccc
Q 006854           80 SDPYVTVVVP--Q---ATVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA  148 (628)
Q Consensus        80 ~dpyv~v~l~--~---~~~~kT~v~~~~~~P~wne~f~~~~~~-----~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~  148 (628)
                      +|||..+.--  .   ...++|.+++++++|.|-+ |.+++..     ....+.+.++|.+..+ +++||++..++.++.
T Consensus       157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ  235 (529)
T ss_pred             CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence            9999988742  2   4567999999999999974 5555333     3567899999999988 799999999999887


Q ss_pred             cCceeEEEEEccCCCC
Q 006854          149 TGELISRWYDIIAPSG  164 (628)
Q Consensus       149 ~~~~~~~w~~L~~~~~  164 (628)
                      . .....-+.++.+..
T Consensus       236 ~-~~~~~~~~~~~~~~  250 (529)
T KOG1327|consen  236 E-PGSPNQIMLINPKK  250 (529)
T ss_pred             c-cCCcccccccChhh
Confidence            4 22233344444443

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=94.46  E-value=1.2  Score=41.16  Aligned_cols=103  Identities=18%  Similarity=0.275  Sum_probs=67.8

Q ss_pred             CCcEEEEEECCee--eeeecccc-CCCCCeEeeEEEEEecCC---------CceEEEEEEEcCCCCC-eeeEEEeccccc
Q 006854           80 SDPYVTVVVPQAT--VARTRVLK-NSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVFGA-QIIGTAAIPAHT  146 (628)
Q Consensus        80 ~dpyv~v~l~~~~--~~kT~v~~-~~~~P~wne~f~~~~~~~---------~~~l~i~v~d~d~~~~-~~iG~~~i~l~~  146 (628)
                      ...||+...+...  ...|.... .+..-.|||.|.+++.-.         ...++|.|+....-+. ..+|.+.|.|.+
T Consensus        24 ~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLae  103 (143)
T PF10358_consen   24 GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAE  103 (143)
T ss_pred             CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHH
Confidence            3356666655533  23333333 366779999998873321         2347888888754343 599999999999


Q ss_pred             cccC--ceeEEEEEccCCCCCCCCCCceEEEEEEEeecCCCC
Q 006854          147 IATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP  186 (628)
Q Consensus       147 l~~~--~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p~~~~~  186 (628)
                      +...  .....-++|...    .+....|+++|.+.+....+
T Consensus       104 y~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~~~~~  141 (143)
T PF10358_consen  104 YANEDEEPITVRLLLKKC----KKSNATLSISISLSELREDP  141 (143)
T ss_pred             hhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEECccCC
Confidence            9963  566677777433    24557899999988876554

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=94.08  E-value=0.16  Score=59.54  Aligned_cols=140  Identities=16%  Similarity=0.129  Sum_probs=69.6

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEE-ecccceeccCCCCCCCCCCCcHHHHHHHHhh--cCCEEEEEEecCC-CccC--c
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSV-FHKIKLIREQTRPLPRGGDLTLGELLKYKSE--EGVRVLLLVWDDK-TSHD--K  314 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f-~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~--rGV~VrILvwD~~-gs~~--~  314 (628)
                      ..+-.+.+++|++|+|.|||+.=-| +.... +  +. ....+ +..|..-+.+|.+  +--+|+|++ ... |--.  .
T Consensus       565 ~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~-~--~~-~~n~v-~~ela~rIv~a~ra~e~frVYIVI-PL~PgfEG~~~  638 (887)
T KOG1329|consen  565 DSIQNAYVKAIRNAEHFIYIENQFFIGSSFN-W--DS-VLNKV-GDELALRIVKAIRAGEKFRVYIVI-PLWPGFEGDDT  638 (887)
T ss_pred             HHHHHHHHHHHHhccceEEEeeeeEEeeccC-C--Cc-ccchH-HHHHHHHHHHHHhcCCceEEEEEE-eCCccccCCCC
Confidence            5678899999999999999964222 21100 1  11 00011 1344444444444  456778876 222 1111  1


Q ss_pred             ccccCCCc-----------ccCChHHHHhhhccCCceEE----eccCCCCCccchhh---hccccccccCcceEEEEecC
Q 006854          315 LGVKTPGV-----------MATHDEETKKFFKHSSVNCV----LAPRYASSKLSYFK---QQIVGTIFTHHQKCVLVDTQ  376 (628)
Q Consensus       315 ~~~~~~~~-----------~~~~~~~~~~~l~~~gv~~~----~~~~~~~~~~~~~~---~~~~~~~~r~HqK~vVVDg~  376 (628)
                      +   ..+-           |........+.|+..|+.=.    +...+-..   .++   +.+.+-..-=|-|++|||++
T Consensus       639 p---~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g---~~e~~~~~~~~emIYVHsK~mIvDD~  712 (887)
T KOG1329|consen  639 P---GSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLG---NREEQAQRLRREMIYVHSKLMIVDDE  712 (887)
T ss_pred             C---CcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeee---ccccccccceEEEEEEeeeeEEecCC
Confidence            1   0110           11112334556666666511    10000000   000   00111112349999999998


Q ss_pred             CCCCCcceEEEEccccCCCCCCCC
Q 006854          377 ASGNNRKITAFIGGIDLCDGRYDT  400 (628)
Q Consensus       377 ~~~~~~~~vafvGG~ni~~~r~d~  400 (628)
                              .+++|+.||.+...++
T Consensus       713 --------~vIIGSANINqRSm~G  728 (887)
T KOG1329|consen  713 --------YVIIGSANINQRSMLG  728 (887)
T ss_pred             --------EEEEeecccchhhccC
Confidence                    9999999999955543

>PF13918 PLDc_3: PLD-like domain

Probab=93.85  E-value=0.64  Score=45.18  Aligned_cols=59  Identities=20%  Similarity=0.124  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHH-HHcCCceEEEEE
Q 006854          561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASK-IRANERFAVARR  626 (628)
Q Consensus       561 ~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a-~~~~~~~~v~i~  626 (628)
                      .=.+|.+..|..|++||||+===++|....   .+...-+    ..|=++|.+| +.+|+++|+.|-
T Consensus        82 ~DldAIl~~I~~A~~fI~IsVMdY~P~~~~---~~~~~YW----P~ID~ALR~AA~~R~V~VRlLIS  141 (177)
T PF13918_consen   82 LDLDAILSVIDSAKKFIYISVMDYLPTSRY---SKPNRYW----PVIDDALRRAAIERGVKVRLLIS  141 (177)
T ss_pred             cHHHHHHHHHHhHhheEEEEEeecCCeeec---CCCCCcc----hhHHHHHHHHHHHcCCeEEEEEe
Confidence            345899999999999999997666665421   1112222    3566677666 489999999884

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=93.81  E-value=0.69  Score=44.02  Aligned_cols=98  Identities=16%  Similarity=0.185  Sum_probs=66.0

Q ss_pred             EEEECCeeeeeeccccCCCCCeEeeEEEEEecCCC--------------ceEEEEEEEcCCCC-CeeeEEEecccccccc
Q 006854           85 TVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------------SNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT  149 (628)
Q Consensus        85 ~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~--------------~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~  149 (628)
                      -+.+.+ +.++|+.+.++.+|.|+|.|.|.+....              .+|.+-|---|..+ ..++|.-.+.-..+..
T Consensus        39 ~l~f~~-QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~  117 (156)
T PF15627_consen   39 HLHFRG-QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLC  117 (156)
T ss_pred             EEEecC-ceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhc
Confidence            333455 4589999999999999999999987752              34666666666655 5788888887766554


Q ss_pred             Ccee--EEEEEccCCCCCCCCCCceEEEEEEEeecC
Q 006854          150 GELI--SRWYDIIAPSGSPPKPGASIQLELKFTPCD  183 (628)
Q Consensus       150 ~~~~--~~w~~L~~~~~~~~~~~g~i~l~l~y~p~~  183 (628)
                      ....  .--..|.+......-..|-|.++++..|.-
T Consensus       118 s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~  153 (156)
T PF15627_consen  118 SGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL  153 (156)
T ss_pred             cCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence            3332  233444333333234679999999988853

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.86  E-value=3.1  Score=39.77  Aligned_cols=66  Identities=15%  Similarity=0.187  Sum_probs=41.6

Q ss_pred             CCcEEEEEE--CCeee---eeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-----CeeeEEEecccc
Q 006854           80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-----AQIIGTAAIPAH  145 (628)
Q Consensus        80 ~dpyv~v~l--~~~~~---~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-----~~~iG~~~i~l~  145 (628)
                      +|-||++.+  +....   ..|+-+.. .++.|||-.+|++.-.    .+.|.|+||+...-+     ...+|.+.++|-
T Consensus        26 ~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF  104 (158)
T cd08398          26 DKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF  104 (158)
T ss_pred             CeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence            567887765  33211   13433333 6799999988875542    567899999865321     256888777764


Q ss_pred             c
Q 006854          146 T  146 (628)
Q Consensus       146 ~  146 (628)
                      +
T Consensus       105 d  105 (158)
T cd08398         105 D  105 (158)
T ss_pred             C
Confidence            4

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=89.98  E-value=2  Score=37.19  Aligned_cols=85  Identities=19%  Similarity=0.274  Sum_probs=61.9

Q ss_pred             CCCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEE
Q 006854           79 TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYD  158 (628)
Q Consensus        79 ~~dpyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~  158 (628)
                      -.+..+.+.+++..+..|.-... .+..|+++|+|.+.. ...|+|.|+-+|.  ....|...+.|++..-+    .-.+
T Consensus         8 ~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~--RslCav~~lrLEd~~~~----~~~~   79 (98)
T cd08687           8 CSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQLD   79 (98)
T ss_pred             ccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc--hhhhhheeeEhhhhccc----ceec
Confidence            36788899999988888877665 588999999999986 6689999987754  34566677777763211    1222


Q ss_pred             ccCCCCCCCCCCceEEEEEEE
Q 006854          159 IIAPSGSPPKPGASIQLELKF  179 (628)
Q Consensus       159 L~~~~~~~~~~~g~i~l~l~y  179 (628)
                      |        .+.|.+..++.|
T Consensus        80 l--------epqg~l~~ev~f   92 (98)
T cd08687          80 M--------EPQLCLVAELTF   92 (98)
T ss_pred             c--------ccccEEEEEEEe
Confidence            3        345888888887

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]

Probab=89.44  E-value=0.37  Score=51.73  Aligned_cols=130  Identities=16%  Similarity=0.150  Sum_probs=75.5

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhc--CCEEEEEEecCC-CccCcccc
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE--GVRVLLLVWDDK-TSHDKLGV  317 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~r--GV~VrILvwD~~-gs~~~~~~  317 (628)
                      .++|+.+...|.+|++.|+|+.--+      -. -        .+.+.+.|..+-+.  -.+|.||+ |.. |....+..
T Consensus        38 ~~fy~~lk~~I~~aq~Ri~lasLYl------G~-~--------E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~  101 (469)
T KOG3964|consen   38 PEFYQRLKKLIKKAQRRIFLASLYL------GK-L--------ERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNS  101 (469)
T ss_pred             HHHHHHHHHHHHHhhheeeeeeecc------ch-h--------HHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCccc
Confidence            6899999999999999999986533      21 1        26788888887754  79999997 886 22221110


Q ss_pred             cCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhc-cc---cccccCcceEEEEecCCCCCCcceEEEEccccC
Q 006854          318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-IV---GTIFTHHQKCVLVDTQASGNNRKITAFIGGIDL  393 (628)
Q Consensus       318 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~-~~---~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni  393 (628)
                      ... .  .-..-.+++  ...|.+.+..  ....+.+.+.+ +.   ....-.|-|+.-+|++         ..+-|.|+
T Consensus       102 ~s~-l--lp~~l~kkf--~e~vd~~lyh--tp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanl  165 (469)
T KOG3964|consen  102 CSA-L--LPVWLGKKF--PERVDESLYH--TPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANL  165 (469)
T ss_pred             chh-h--chHHHhhhh--hhhhceeeec--ChhhhhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccc
Confidence            000 0  000011222  2334444311  00001111111 11   1234679999999995         47789999


Q ss_pred             CCCCCCCCC
Q 006854          394 CDGRYDTPE  402 (628)
Q Consensus       394 ~~~r~d~~~  402 (628)
                      +++|+.+++
T Consensus       166 s~dyfTNRq  174 (469)
T KOG3964|consen  166 SNDYFTNRQ  174 (469)
T ss_pred             hhhhhcccc
Confidence            998876553

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=88.49  E-value=1.3  Score=42.86  Aligned_cols=76  Identities=14%  Similarity=0.314  Sum_probs=61.4

Q ss_pred             cccCCCCCCcEEEEEECCeeeeeeccccC--CCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccc
Q 006854           73 RKSKIITSDPYVTVVVPQATVARTRVLKN--SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA  148 (628)
Q Consensus        73 ~~~~~~~~dpyv~v~l~~~~~~kT~v~~~--~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~  148 (628)
                      |.+.+.....|++|.++++.+.+|+...-  ...-.|||.|.+.+...-+.|.++||......+..|+++.+|+-...
T Consensus        30 RR~~~~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   30 RRQRVQKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST  107 (168)
T ss_pred             hHHHhhheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence            44555567899999999988888877665  33456789999999888889999999998866999999999975444

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=88.34  E-value=2.5  Score=40.99  Aligned_cols=51  Identities=16%  Similarity=0.285  Sum_probs=33.8

Q ss_pred             CCcEEEEEE--CCee---eeeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcC
Q 006854           80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDD  130 (628)
Q Consensus        80 ~dpyv~v~l--~~~~---~~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d  130 (628)
                      .+-||++.|  +...   ...|+.+.-+.++.|||.+.|++.-.    .+.|.|.||+..
T Consensus        27 ~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693          27 MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            566777754  4322   12555555567899999998875442    567899999854

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PLN02866 phospholipase D

Probab=88.04  E-value=1  Score=54.35  Aligned_cols=61  Identities=16%  Similarity=0.130  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       560 ~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                      .....++..+|.+||++|||+.=.|-|..+.+.+    +.+ -++..|.+.|.+|+++|++++|++
T Consensus       343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp----~~D-~~g~RL~~lL~rKAkrGVkVrVLL  403 (1068)
T PLN02866        343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRP----FHD-HESSRLDSLLEAKAKQGVQIYILL  403 (1068)
T ss_pred             HHHHHHHHHHHHhcccEEEEEEccCCceEEEEec----CCC-chHHHHHHHHHHHHHCCCEEEEEE
Confidence            4688999999999999999977555544433211    012 356789999999999999999874

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=84.54  E-value=3.7  Score=38.82  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=44.7

Q ss_pred             CCcEEEEEE--CCe---eeeeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC---CeeeEEEecccccc
Q 006854           80 SDPYVTVVV--PQA---TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG---AQIIGTAAIPAHTI  147 (628)
Q Consensus        80 ~dpyv~v~l--~~~---~~~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~---~~~iG~~~i~l~~l  147 (628)
                      .+-||++.+  +..   ....|+....+.++.|||...|++.-.    .+.|.|+||+.+..+   +..||.+.++|=+.
T Consensus        28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence            566777754  332   122344333347899999988875432    567899999865443   57899998887543

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=83.89  E-value=4  Score=39.77  Aligned_cols=55  Identities=18%  Similarity=0.220  Sum_probs=34.0

Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC----CeeeEEEeccccc
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG----AQIIGTAAIPAHT  146 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~----~~~iG~~~i~l~~  146 (628)
                      ..+.|.|...+.+|.|+|+|.+.++..   ...|.|++++...-.    ...+|-+.+||-+
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            446888888999999999999999886   456899999865433    2688888888765

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=83.34  E-value=3.2  Score=39.71  Aligned_cols=68  Identities=25%  Similarity=0.310  Sum_probs=48.9

Q ss_pred             CCCcEEEEEE--CCee---eeeeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccc
Q 006854           79 TSDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHT  146 (628)
Q Consensus        79 ~~dpyv~v~l--~~~~---~~kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~  146 (628)
                      .+|-||++.+  ++..   .-.|+.+.-+..+.|||-..|++.-.    .+.|.|+||+.+..+ ...+|.+.++|-+
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            3788998876  3321   12566666677889999988886553    567999999987654 6789988888754

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=82.83  E-value=11  Score=33.77  Aligned_cols=94  Identities=11%  Similarity=0.147  Sum_probs=51.8

Q ss_pred             EEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC--------CceEEEEEEEcCCCCCeeeEEEeccccccccC--ce
Q 006854           83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG--EL  152 (628)
Q Consensus        83 yv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~--------~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~--~~  152 (628)
                      ||.+.+-.-....|.++. ..+|.+|-+-.+.|.-.        ...+.++++..-......+|.+.+++..+...  +.
T Consensus         2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~   80 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER   80 (107)
T ss_dssp             EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred             EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence            566666554445666665 88999998777776654        46789999886633368999999999988833  34


Q ss_pred             eEEEEEccCCCCCCCCCCceEEEEEEEe
Q 006854          153 ISRWYDIIAPSGSPPKPGASIQLELKFT  180 (628)
Q Consensus       153 ~~~w~~L~~~~~~~~~~~g~i~l~l~y~  180 (628)
                      +..-..|.+..++   .-|.|...++..
T Consensus        81 i~~~~~l~g~~~~---~~g~l~y~~rl~  105 (107)
T PF11618_consen   81 IHGSATLVGVSGE---DFGTLEYWIRLR  105 (107)
T ss_dssp             EEEEEEE-BSSS----TSEEEEEEEEEE
T ss_pred             EEEEEEEeccCCC---eEEEEEEEEEec
Confidence            6667777666555   568888888743

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=80.41  E-value=5.2  Score=41.97  Aligned_cols=127  Identities=18%  Similarity=0.184  Sum_probs=79.5

Q ss_pred             CCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEE
Q 006854            7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV   86 (628)
Q Consensus         7 ~~~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v   86 (628)
                      .+-+++.-..|.|.+.++++|+|.-....                           -|-             +.+-||.+
T Consensus        41 ~d~l~~~s~tGiL~~H~~~GRGLr~~p~~---------------------------kgl-------------t~~~ycVl   80 (442)
T KOG1452|consen   41 LDHLRLVSSTGILYFHAYNGRGLRMTPQQ---------------------------KGL-------------TVCFYCVL   80 (442)
T ss_pred             cceeeeecccceEEEEEecccccccChhc---------------------------cCc-------------eeeeeeee
Confidence            34456777889999999999999743210                           011             37899999


Q ss_pred             EECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854           87 VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (628)
Q Consensus        87 ~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~  165 (628)
                      ..+.+-..||.+......-.|.|+|.+.+-. ...+.+-|+.|+... +++.-...+.+..+.... -++-+.|.     
T Consensus        81 e~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~RHKLC~~g~l~~~~v~rqs-pd~~~Al~-----  153 (442)
T KOG1452|consen   81 EPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRRHKLCHLGLLEAFVVDRQS-PDRVVALY-----  153 (442)
T ss_pred             eecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhhccccccchhhhhhhhhcC-Ccceeeee-----
Confidence            9887665677777777777899999988764 345677788777654 544333334444333221 12223331     


Q ss_pred             CCCCCceEEEEEEEee
Q 006854          166 PPKPGASIQLELKFTP  181 (628)
Q Consensus       166 ~~~~~g~i~l~l~y~p  181 (628)
                       ..+.|++-+.|.+..
T Consensus       154 -lePrgq~~~r~~~~D  168 (442)
T KOG1452|consen  154 -LEPRGQPPLRLPLAD  168 (442)
T ss_pred             -cccCCCCceecccCC
Confidence             134477777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	628
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-18
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	4e-17
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	4e-17
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	3e-16
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	4e-16
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	1e-15
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	3e-14
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-13
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-12
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-11
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	6e-07
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	3e-11
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	4e-11
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	5e-11
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	7e-11
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	8e-11
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-10
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-10
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-10
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-10
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-10
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	5e-10
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-09
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-07
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-09
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	3e-09
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	3e-09
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	4e-09
1v0w_A	506	Phospholipase D; hydrolase, substrate SOAK, dibuty	6e-09
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	7e-09
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	8e-09
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	1e-08
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-08
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-08
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	2e-08
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-08
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	3e-08
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	9e-08
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	9e-08
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	9e-08
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	2e-07
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-07
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-05
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 81.2 bits (201), Expect = 1e-18
 Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 79  TSDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGAQ 135
           T DPYV + +     +  RTR   N   PVWNE F   L     N LEI + D +    +
Sbjct: 26  TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 85

Query: 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCD 183
            +GTA     ++  GE     +               + LE+      
Sbjct: 86  TLGTATFTVSSMKVGEKKEVPFIF--------NQVTEMVLEMSLEVAS 125

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 78.1 bits (192), Expect = 4e-17
 Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 46/179 (25%)

Query: 7   SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVR 66
           S     +  +G L ++I  A  L        H                            
Sbjct: 19  SMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHS--------------------------- 51

Query: 67  HTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQV 126
                + K      DPY+TV V Q  V +T   + + +P +NE F   +     +LE+ V
Sbjct: 52  -----LFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANV-TDGGHLELAV 105

Query: 127 KDDDVFGA-QIIGTAAIPAHTIATG----ELISRWYDIIAPSGSPPKPGASIQLELKFT 180
             +   G    +    +    +       +    W D+        +P   + + +  T
Sbjct: 106 FHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDL--------EPEGKVFVVITLT 156

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 77.2 bits (190), Expect = 4e-17
 Identities = 22/170 (12%), Positives = 47/170 (27%), Gaps = 43/170 (25%)

Query: 15  LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRK 74
            +G L +KI  A  L                                         +  +
Sbjct: 4   FNGLLKIKICEAVSLKPTAWSLRDA-------------------------------VGPR 32

Query: 75  SKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA 134
            +    DPY+ + V  + + +T   + +  P W++ F   +      +E+ V  D   G 
Sbjct: 33  PQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDV-CNGRKIELAVFHDAPIGY 91

Query: 135 -QIIGTAAIPAHTIATGEL--ISRWYDIIAPSGSPPKPGASIQLELKFTP 181
              +    I    +          W D+        +P   + + +  + 
Sbjct: 92  DDFVANCTIQFEELLQNGSRHFEDWIDL--------EPEGKVYVIIDLSG 133

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 75.1 bits (185), Expect = 3e-16
 Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 48/168 (28%)

Query: 16  HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKS 75
           HG L++ ++ A+ L + D ++                                       
Sbjct: 9   HGTLEVVLVSAKGLEDADFLN--------------------------------------- 29

Query: 76  KIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA- 134
                DPYV +                  P WNE F   ++   + L+ ++ D DV    
Sbjct: 30  ---NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTED 86

Query: 135 QIIGTAAIP-AHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181
             +G A IP       G +    Y+++       +    I + L F P
Sbjct: 87  DAVGEATIPLEPVFVEGSIPPTAYNVVKDE----EYKGEIWVALSFKP 130

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 74.8 bits (184), Expect = 4e-16
 Identities = 35/171 (20%), Positives = 57/171 (33%), Gaps = 50/171 (29%)

Query: 17  GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSK 76
           G L + +  A  +P                                              
Sbjct: 7   GMLRVIVESASNIPKTKFG----------------------------------------- 25

Query: 77  IITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPL----AHPLSNLEIQVKDDDVF 132
               DP V+V+  +    +T+ + N   PVWNE     L        S+L I VKD +  
Sbjct: 26  --KPDPIVSVIF-KDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI 82

Query: 133 GA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP-GASIQLELKFTP 181
           G  ++IGTA +    +   +  S  Y +I+      +  GA+I L + + P
Sbjct: 83  GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 31/164 (18%), Positives = 51/164 (31%), Gaps = 47/164 (28%)

Query: 17  GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSK 76
           G L +K+++A  L   D                                           
Sbjct: 13  GILQVKVLKAADLLAADFSG---------------------------------------- 32

Query: 77  IITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQ- 135
              SDP+  + +    + +T  +  +  P WN+ F  P+      LE+ V D+D      
Sbjct: 33  --KSDPFCLLELGNDRL-QTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD 89

Query: 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179
            +G  AIP  +I  G+     Y +          G  I LE+  
Sbjct: 90  FLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKG-VIYLEMDL 130

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 69.4 bits (170), Expect = 3e-14
 Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 55/177 (31%)

Query: 17  GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSK 76
             + +++I    L   D++                                         
Sbjct: 20  RIVRVRVIAGIGLAKKDILG---------------------------------------- 39

Query: 77  IITSDPYVTVVV-----PQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDV 131
              SDPYV V +        T  +T+ +K S  P WNE     +      L  +V D++ 
Sbjct: 40  --ASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENR 97

Query: 132 FGAQ-IIGTAAIPAHTIATGE------LISRWYDIIAPSGSPPKPGASIQLELKFTP 181
                 +G   +P + + T           + + +   S      G  ++L++ + P
Sbjct: 98  LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKG-YLRLKMTYLP 153

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 66.8 bits (163), Expect = 4e-13
 Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 55/177 (31%)

Query: 17  GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSK 76
             + +K+I    L   D++                                         
Sbjct: 8   RVVRVKVIAGIGLAKKDILG---------------------------------------- 27

Query: 77  IITSDPYVTVVV-----PQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDV 131
              SDPYV V +        T  +T+ +K S  P WNE     +      +  +V D++ 
Sbjct: 28  --ASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENR 85

Query: 132 FGA-QIIGTAAIPAHTIATGE------LISRWYDIIAPSGSPPKPGASIQLELKFTP 181
                 +G   +P + + T           + + +   S      G  ++L++ + P
Sbjct: 86  LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKG-YLRLKMTYLP 141

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 74  KSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG 133
           K       PYV V V   +  +T    N+  P W +   + +  P+S L  +V       
Sbjct: 51  KKNWFGPSPYVEVTVDGQSK-KTEKCNNTNSPKWKQPLTVIV-TPVSKLHFRVWSHQTLK 108

Query: 134 A-QIIGTAAIP 143
           +  ++GTAA+ 
Sbjct: 109 SDVLLGTAALD 119

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 79  TSDPYVTV-VVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVFG 133
           TSDPYV V ++P       T+V + +  PV+NE F   + +       L + V D D F 
Sbjct: 39  TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS 98

Query: 134 AQ-IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181
              IIG   +P +T+  G +   W D+ +      +    I   L++ P
Sbjct: 99  KHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVP 147

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 50.6 bits (121), Expect = 6e-07
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 13/99 (13%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFNIPLAH-PLSN--LEIQVKDDDV 131
            SDPYV + ++         +T + KN+  P +NE F+  +    +    + + V D D 
Sbjct: 170 LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 229

Query: 132 FGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169
            G    IG   +  +  +TG  +  W D++A   +P +P
Sbjct: 230 IGKNDAIGKVFVGYN--STGAELRHWSDMLA---NPRRP 263

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 80  SDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFNIPLAHP-LSN--LEIQVKDDDVF 132
           SDPYV + ++P    +   +T V K +  PV+++ F+  ++ P +    L++ VK+   F
Sbjct: 44  SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGF 103

Query: 133 GA---QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
            +    ++G   +   +    +  ++WYD+   SG  
Sbjct: 104 LSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSGPS 140

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 79  TSDPYVTVVV-PQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG---- 133
             DP+  +VV        T  +KN+ +P WN+H+++ +     ++ I V +         
Sbjct: 25  LPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV-GKTDSITISVWNHKKIHKKQG 83

Query: 134 AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS---IQLELKF 179
           A  +G   + ++ I+  +  + +  +     +P    A    I + L+ 
Sbjct: 84  AGFLGCVRLLSNAISRLKD-TGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 64.6 bits (156), Expect = 5e-11
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 79  TSDPYVTVVVPQATV--ARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGAQ 135
           T DPYV + +        RTR   N   PVWNE F   L     N LEI + D +    +
Sbjct: 41  TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 100

Query: 136 IIGTAAIPAHTIATGELISRWYD 158
            +GTA     ++  GE     + 
Sbjct: 101 TLGTATFTVSSMKVGEKKEVPFI 123

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 59.2 bits (143), Expect = 7e-11
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 80  SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGT 139
            + YVT+ V Q   + T  ++ SQ P W + F   +      L ++V +  +    ++GT
Sbjct: 23  FNTYVTLKV-QNVKSTTIAVRGSQ-PSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGT 80

Query: 140 AAIPAHTI--ATGELISRWY 157
             IP  TI  +  E    W 
Sbjct: 81  VWIPLRTIRQSNEEGPGEWL 100

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 59.3 bits (144), Expect = 8e-11
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 79  TSDPYVTVVV---PQATVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVF 132
             D YV   V     +  A+T + K      W E   +PLA    P + L + ++  D F
Sbjct: 43  GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF 102

Query: 133 GA-QIIGTAAIPAHTIATGELISRWYDIIAPS 163
               + G   +     +     ++W ++    
Sbjct: 103 SRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 79  TSDPYVTV-VVP-QATVARTRVLKNSQEPVWNEHF--NIPLAHPLS-NLEIQVKDDDVFG 133
           TSDPYV V ++P +     T+V + +  PV+NE F   +P +      L + V D D F 
Sbjct: 54  TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 113

Query: 134 A-QIIGTAAIPAHTIATGELISRWYDIIA 161
              IIG   +P +T+  G +   W D+ +
Sbjct: 114 KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 18/115 (15%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQI-- 136
           +SDPYVTV V +    RT+ +  +  PVW E+F+    +    ++++V D+D        
Sbjct: 37  SSDPYVTVQVGKTKK-RTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVK 95

Query: 137 ----------IGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA---SIQLELK 178
                     +G   I   T++       WY++   +      GA    I +E+K
Sbjct: 96  QRFKRESDDFLGQTIIEVRTLSGEM--DVWYNLDKRTDKSAVSGAIRLHISVEIK 148

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 79  TSDPYVTV-VVPQATVA----RTRVLKNSQEPVWNEHFNIPLAHP-LSN--LEIQVKDDD 130
                + V V+P +       RTR L  S   V+NE F + +++P L    L + V   D
Sbjct: 63  DQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTD 122

Query: 131 VFGA-QIIGTAAIP-AHTIATGELISRWYDIIA 161
                + +G A I  A    +GE  +RWY++++
Sbjct: 123 RSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFNIPLAHP-LSN--LEIQVKDDDV 131
            S+PYV   ++P  +     +T + +++  P+++E     +    L+   L+  V     
Sbjct: 44  RSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGR 103

Query: 132 FGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169
           FG    +G A I   +    + +     +     +  + 
Sbjct: 104 FGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESEG 142

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 79  TSDPYVTV-VVP-QATVARTRVLKNSQEPVWNEHFNIPLAHP-LSN--LEIQVKDDDVFG 133
           TSDPYV V ++P +     T+V + +  PV+NE F   + +  L    L + V D D F 
Sbjct: 62  TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 121

Query: 134 A-QIIGTAAIPAHTIATGELISRWYDIIAP 162
              IIG   +P +T+  G +   W D+ + 
Sbjct: 122 KHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 50/160 (31%)

Query: 11  KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSK 70
           +       L + +  A+ L  MD                                     
Sbjct: 25  QAHIDREVLIVVVRDAKNLVPMDPNG---------------------------------- 50

Query: 71  IIRKSKIITSDPYVTV-VVPQ---ATVARTRVLKNSQEPVWNEHFNIPLAHPLSN--LEI 124
                    SDPYV + ++P     +  +T+ +K S  P WNE F   L     +  L +
Sbjct: 51  --------LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSV 102

Query: 125 QVKDDDVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPS 163
           ++ D D+      +G+ +     +     +  W+ +++  
Sbjct: 103 EIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE 141

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 79  TSDPYVTVVV--PQATVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVFG 133
            SDPYV + +   +    +T+V + +  P++NE F   +         L   V D D F 
Sbjct: 40  FSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS 99

Query: 134 A-QIIGTAAIPA--HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181
              +IG   +               W DI+         G  +   L + P
Sbjct: 100 RHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLG-ELNFSLCYLP 149

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 12/99 (12%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDV 131
            SDPYV   ++ +       +T + KN+  P +NE     +A        L I V D D 
Sbjct: 172 FSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC 231

Query: 132 FGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169
            G  ++IG   +     A       W +++A   +P KP
Sbjct: 232 IGHNEVIGVCRVGPEA-ADPHGREHWAEMLA---NPRKP 266

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 14/101 (13%)

Query: 79  TSDPYVTV-VVP---QATVARTRVLKNSQEPVWNEHF---NIPLAHPLSN--LEIQVKDD 129
             +PYV +  +P        RT+ +K + EP WN+ F    +          LEI + D 
Sbjct: 41  PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE-FRERMLEITLWDQ 99

Query: 130 DVFGAQ---IIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167
                +    +G   I   T    +    WY +      P 
Sbjct: 100 ARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSGPS 139

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 79  TSDPYVTV-VVPQ-ATVARTRVLKNSQEPVWNEHF---NIPLAHPLS-NLEIQVKDDDVF 132
           TSDP+V + ++P       T+V + +  P WNE F     P    +   L +QV D D F
Sbjct: 46  TSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRF 105

Query: 133 GA-QIIGTAAIPAHTIATGELISRWYDIIAPSGS 165
                IG  +IP + +   ++ + W D+     S
Sbjct: 106 SRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPS 139

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 79  TSDPYVTV-VVP---QATVARTRVLKNSQEPVWNEHFNIPLAHP--LSN--LEIQVKDDD 130
             +PYV   ++P   + +  +T++ + ++ P +NE           L    L++ V   +
Sbjct: 39  DPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE 98

Query: 131 VFGA-QIIGTAAIPAHTIATGELISRWYDIIAPS 163
                  +G   +P       +   +WY + A +
Sbjct: 99  SLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT 132

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 79  TSDPYVTV-VVP-QATVARTRVLKNSQEPVWNEHFNIPLAHP-LSN--LEIQVKDDDVFG 133
            S+PYV + ++P Q    +T V + +Q+PV+ E +   +         L + V D D F 
Sbjct: 53  HSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFS 112

Query: 134 A-QIIGTAAIPAHTIATGELISRWYDIIAPS 163
              +IG  ++P   +   +    W  +I   
Sbjct: 113 RHCVIGKVSVPLCEVDLVKGGHWWKALIPSG 143

>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Length = 506

 Score = 57.8 bits (139), Expect = 6e-09
 Identities = 45/311 (14%), Positives = 91/311 (29%), Gaps = 65/311 (20%)

Query: 287 LGELLKYKSEEG--VRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA 344
           +   LK  + +G  ++V +LV                + + + +E       ++ N  L 
Sbjct: 99  IVAGLKESAAKGNKLKVRILVGAA------PVYHMNVIPSKYRDELTAKLGKAAENITLN 152

Query: 345 PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHR 404
               ++  + F          +H K ++VD Q        +A  GGI+     Y    H 
Sbjct: 153 VASMTTSKTAFSW--------NHSKILVVDGQ--------SALTGGINSWKDDYLDTTH- 195

Query: 405 LFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTE 464
                                      P  D+   L GPAA       +  W    +   
Sbjct: 196 ---------------------------PVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKS 228

Query: 465 LTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHV 524
                   +      +  + +     +P+ S  T    ++      V +   D    +  
Sbjct: 229 NIASVWFAASGNAGCMPTMHK---DTNPKASPATGNVPVIAVGGLGVGIKDVDPKSTFRP 285

Query: 525 QIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYF 584
            +  + D        K +  + D +    +D       ++A    + SA+  I I  Q  
Sbjct: 286 DLPTASD-------TKCVVGLHDNTNA-DRDYDTVNPEESALRALVASAKGHIEISQQDL 337

Query: 585 LGSSYAWPSYK 595
             ++   P  +
Sbjct: 338 --NATCPPLPR 346

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 18/105 (17%)

Query: 79  TSDPYVTV-------------VVPQATVARTRVLKNSQEPVWNEHF---NIPLAHPLS-N 121
            SDP+V V                     RT+ ++ S  P WN+     +I +   +   
Sbjct: 38  YSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT 97

Query: 122 LEIQVKDDDVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGS 165
           LE+ V D D F +   +G   I   + +  +   RWY +   + S
Sbjct: 98  LEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTES 142

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPV-WNEHFNIPLAHPLSN---LEIQVKD-DDVFG 133
            +D    V   +     +RVL+N ++   ++E F  P+A  +     LEIQ+ +   VF 
Sbjct: 36  RADRIAKVTF-RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFS 94

Query: 134 AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181
            ++IGT  +    +     +     +I  + +      S+ +E+++  
Sbjct: 95  NKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAI--IKTSLSMEVRYQA 140

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 81  DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTA 140
           + YVT+ V Q   + T  ++ SQ P W + F   +      L ++V +  +    ++GT 
Sbjct: 33  NTYVTLKV-QNVESTTIAVRGSQ-PSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTV 90

Query: 141 AIPAHTI--ATGELISRWYDI 159
            IP  TI  +  E    W  +
Sbjct: 91  WIPLRTIRQSNEEGPGEWLTL 111

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 79  TSDPYVTV-VVP-QATVARTRVLKNSQEPVWNEHF---NIPLAHPLSN--LEIQVKDDDV 131
           TSDPY+ + ++P +    +TRVL+ + +P ++E F    IP    +    L   +   D 
Sbjct: 43  TSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQ-IQELALHFTILSFDR 101

Query: 132 FGA-QIIGTAAIPAHTI-ATGELISRWYDIIAPSGS 165
           F    IIG   IP   I  +   +    +II+   S
Sbjct: 102 FSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPSS 137

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNE--HFNIPLAHPLSN--LEIQVKDDD 130
            SDPYV V +          +T V K +   V+NE   F+IP    L    +E  V D +
Sbjct: 50  LSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES-LEEISVEFLVLDSE 108

Query: 131 VFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169
                ++IG   + A   A G     W +I      P + 
Sbjct: 109 RGSRNEVIGRLVLGAT--AEGSGGGHWKEICD---FPRRQ 143

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFNIPLAHPLSN--LEIQVKDDDVF 132
           T DPYV + ++P+ +     +T+ + + ++P ++EHF  P+        L + V +    
Sbjct: 46  TCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQ 105

Query: 133 GA--QIIGTAAIPAHTIAT-GELISRWYD 158
                +IG  +    ++ T  + IS WY 
Sbjct: 106 SRQSGLIGCMSFGVKSLLTPDKEISGWYY 134

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHF---NIPLAHPLS-NLEIQVKDDD 130
            +DPYV + ++P A+ +   RT+ L+N++ PVWNE      I         L I V D+D
Sbjct: 49  LADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDED 108

Query: 131 VFGA-QIIGTAAIPAHTIATGELISRWYD 158
            FG  + IG        +   +  +    
Sbjct: 109 KFGHNEFIGETRFSLKKLKANQRKNFNIC 137

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNE--HFNIPLAHPLSN--LEIQVKDDD 130
           TSDPYV V ++ +       +T   K +  P++NE   F+IP    L    + I V D D
Sbjct: 36  TSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK-LRETTIIITVMDKD 94

Query: 131 VFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
                 +IG   +     +    +  W D+IA    P
Sbjct: 95  KLSRNDVIGKIYLSWK--SGPGEVKHWKDMIARPRQP 129

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 14/92 (15%)

Query: 79  TSDPYVTV-VVP---QATVARTRVLKNSQEPVWNEHF---NIPLAHPLSN--LEIQVKDD 129
             +PYV +  +P        RT+ +K + EP WN+ F    +          LEI + D 
Sbjct: 38  PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE-FRERMLEITLWDQ 96

Query: 130 DVFGAQ---IIGTAAIPAHTIATGELISRWYD 158
                +    +G   I   T    +    WY 
Sbjct: 97  ARVREEESEFLGEILIELETALLDD-EPHWYK 127

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 26/171 (15%), Positives = 50/171 (29%), Gaps = 47/171 (27%)

Query: 11  KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSK 70
            +    G L++++IRAR L                                         
Sbjct: 24  GMEDKKGQLEVEVIRARSLTQKPGSKS--------------------------------- 50

Query: 71  IIRKSKIITSDPYVTV-VVP---QATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQV 126
                   T  PYV V ++         +TR+ + + +P++ +      +     L++ V
Sbjct: 51  --------TPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIV 102

Query: 127 KDD-DVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175
             D         +G A I    +    ++  WY +  PS       A +  
Sbjct: 103 WGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLAPLTR 153

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 12/97 (12%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNE--HFNIPLAHPLSN--LEIQVKDDD 130
            SDPYV + ++         +T + KN+  P +NE   F +P    +    + + V D D
Sbjct: 45  LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ-IQKVQVVVTVLDYD 103

Query: 131 VFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
             G    IG   +  +  +TG  +  W D++A    P
Sbjct: 104 KIGKNDAIGKVFVGYN--STGAELRHWSDMLANPRRP 138

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 12/97 (12%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEH--FNIPLAHPLSN--LEIQVKDDD 130
            SDP+V + + P        +T++ K +  P +NE   ++I  +  L+   L+I V D D
Sbjct: 57  YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD-LAKKSLDISVWDYD 115

Query: 131 VFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
           +  +   IG   +     A GE +  WY+ +      
Sbjct: 116 IGKSNDYIGGCQLGIS--AKGERLKHWYECLKNKDKK 150

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 21/142 (14%), Positives = 36/142 (25%), Gaps = 10/142 (7%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
            + I  +     +     R             C   C   K         +         
Sbjct: 340 RQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVTNQ-DCCPRQRGLAHLVV 398

Query: 70  KIIRKSKI-----ITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPL--AHPLSNL 122
              R   +       +D Y+ V        RT V+ N+  P W +  +           L
Sbjct: 399 SNFRAEHLWGDYTTATDAYLKVFFGGQEF-RTGVVWNNNNPRWTDKMDFENVLLSTGGPL 457

Query: 123 EIQVKDDDVFGAQ-IIGTAAIP 143
            +QV D D      ++G+    
Sbjct: 458 RVQVWDADYGWDDDLLGSCDRS 479

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 23/147 (15%), Positives = 40/147 (27%), Gaps = 10/147 (6%)

Query: 80  SDPYVTVVVPQATVARTRVLK---NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG--- 133
              Y  + +     ART       +     W EHF       +  L + +  D       
Sbjct: 27  KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKK 86

Query: 134 --AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQG 191
             A  +G   +P  T+A      +WY +  P+GS       +           +    +G
Sbjct: 87  DKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS--GGSGGMGSGGGGGSGGGSGGKGKG 144

Query: 192 IAGDPEHKGVRNAYFPLRKGSHVRLYQ 218
                  K        L    +    +
Sbjct: 145 GCPAVRLKARYQTMSILPMELYKEFAE 171

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 7e-04
 Identities = 44/249 (17%), Positives = 85/249 (34%), Gaps = 73/249 (29%)

Query: 398 YDTPEHRL-FRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR--LDGP------AAYDV 448
           ++T EH+  ++D+ +VF+D F +               +  C+   D P         D 
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVD---------------NFDCKDVQDMPKSILSKEEIDH 53

Query: 449 LINFEQR--------WRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNG 500
           +I  +          W   +K  E+  KF      R +Y        +++SP +  +   
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RINY-------KFLMSP-IKTEQRQ 104

Query: 501 TTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGF---PKSIEDIDD--QSLICAKD 555
               P     + + + D   N   Q+F        K      +    +      L  AK+
Sbjct: 105 ----PSMMTRMYIEQRDRLYN-DNQVFA-------KYNVSRLQPYLKLRQALLELRPAKN 152

Query: 556 VVID------KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELAL 609
           V+ID      K+          S +    ++ + F      W + KN  +   + +E+  
Sbjct: 153 VLIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIF------WLNLKNCNSPETV-LEMLQ 203

Query: 610 KIASKIRAN 618
           K+  +I  N
Sbjct: 204 KLLYQIDPN 212

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	628
1v0w_A	506	Phospholipase D; hydrolase, substrate SOAK, dibuty	99.95
3hsi_A	458	Phosphatidylserine synthase; CDP- diacylglycerol--	99.92
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.79
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.79
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.79
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.78
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.78
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.77
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.77
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.76
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.75
4ggj_A	196	Mitochondrial cardiolipin hydrolase; piRNA pathway	99.75
1xdp_A	687	Polyphosphate kinase; PPK, PPK complex with AMPPNP	99.74
2o8r_A	705	Polyphosphate kinase; structural genomics, protein	99.72
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.71
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.71
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.7
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.67
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.67
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.67
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.66
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.66
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.66
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.65
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.65
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.64
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.64
1byr_A	155	Protein (endonuclease); phosphodiesterase,; 2.00A	99.64
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.62
4gel_A	220	Mitochondrial cardiolipin hydrolase; piRNA, phosph	99.62
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.62
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.62
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.6
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.6
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.59
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.59
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.58
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.58
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.58
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.57
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.57
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.54
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.51
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.51
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.46
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.43
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.4
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.38
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.38
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.37
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.33
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.27
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.12
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.93
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.93
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.92
3hsi_A	458	Phosphatidylserine synthase; CDP- diacylglycerol--	98.87
1v0w_A	506	Phospholipase D; hydrolase, substrate SOAK, dibuty	98.81
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.77
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.69
2o8r_A	705	Polyphosphate kinase; structural genomics, protein	97.39
1byr_A	155	Protein (endonuclease); phosphodiesterase,; 2.00A	97.23
4ggj_A	196	Mitochondrial cardiolipin hydrolase; piRNA pathway	97.05
4gel_A	220	Mitochondrial cardiolipin hydrolase; piRNA, phosph	96.97
1xdp_A	687	Polyphosphate kinase; PPK, PPK complex with AMPPNP	96.93
3qph_A	342	TRMB, A global transcription regulator; transcript	94.57
2f5t_X	233	Archaeal transcriptional regulator TRMB; sugar-bin	93.15
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	83.87
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	83.52

>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*

Probab=99.95  E-value=2.8e-27  Score=264.06  Aligned_cols=158  Identities=18%  Similarity=0.163  Sum_probs=112.2

Q ss_pred             cchHHHHHHHHHhccceEEEEEEE-EecccceeccCCCCCCCCCCCcHHHHHHHHhhcC--CEEEEEEecCCCccCcccc
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWS-VFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLVWDDKTSHDKLGV  317 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~-f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rG--V~VrILvwD~~gs~~~~~~  317 (628)
                      +++|++|+++|++|+++|+|++|+ |.+       +.    .|  ..|.++|++||+||  |+||||+ |..|+....  
T Consensus        65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~-------d~----~g--~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~--  128 (506)
T 1v0w_A           65 KRLLAKMTENIGNATRTVDISTLAPFPN-------GA----FQ--DAIVAGLKESAAKGNKLKVRILV-GAAPVYHMN--  128 (506)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEEESSCCC-------HH----HH--HHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCC--
T ss_pred             HHHHHHHHHHHHHhccEEEEEEeeccCC-------Ch----HH--HHHHHHHHHHHhCCCCcEEEEEE-eCccccccc--
Confidence            578999999999999999999998 444       21    23  68999999999999  9999996 876543210  


Q ss_pred             cCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCC
Q 006854          318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR  397 (628)
Q Consensus       318 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r  397 (628)
                             ..+..+.+.|+.+|+++..  ..+.....+. . ......+||||++|||++        +||+||+|+++++
T Consensus       129 -------~~~~~~~~~L~~~g~~~~~--~~~~~~~~~~-~-~~~~~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~  189 (506)
T 1v0w_A          129 -------VIPSKYRDELTAKLGKAAE--NITLNVASMT-T-SKTAFSWNHSKILVVDGQ--------SALTGGINSWKDD  189 (506)
T ss_dssp             -------CHHHHHHHHHHHHHGGGGG--GEEEEEEEEC-S-BTTTTBCBCCCEEEETTT--------EEEEESCCCCHHH
T ss_pred             -------cCCHHHHHHHHhcccceee--cCcccccccc-c-cCCccccceeeEEEECCc--------EEEeeccccCccc
Confidence                   0134566667765554210  0000000000 0 001224999999999998        9999999997545


Q ss_pred             CCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcc
Q 006854          398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK  461 (628)
Q Consensus       398 ~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~  461 (628)
                      |.+.                            ..+|||++++++||+|.+++..|.++|+....
T Consensus       190 y~~~----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~  225 (506)
T 1v0w_A          190 YLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQ  225 (506)
T ss_dssp             HTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred             cccC----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhcc
Confidence            5431                            13799999999999999999999999987653

>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}

Probab=99.92  E-value=6.4e-25  Score=241.33  Aligned_cols=264  Identities=11%  Similarity=0.046  Sum_probs=168.4

Q ss_pred             CCCCceeEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHH
Q 006854          209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG  288 (628)
Q Consensus       209 ~~gn~v~~~~~g~~~~g~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~  288 (628)
                      +.+|.++++.+|                    +++|++++++|++|+++|+|++|+|.+       +.    .|  ..|.
T Consensus        24 ~~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~~~-------d~----~g--~~l~   70 (458)
T 3hsi_A           24 LQAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYWQK-------DE----AG--QEIL   70 (458)
T ss_dssp             CCGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCBCS-------SH----HH--HHHH
T ss_pred             ccCCeEEEEeCH--------------------HHHHHHHHHHHHhcCCEEEEEEEEEec-------Cc----HH--HHHH
Confidence            468899999998                    689999999999999999999999865       22    33  6899


Q ss_pred             HHHHHHhhc--CCEEEEEEecCC-------CccCcccccCCCcccCChHHHHhhhccCC--ceEE--eccCCCCCccchh
Q 006854          289 ELLKYKSEE--GVRVLLLVWDDK-------TSHDKLGVKTPGVMATHDEETKKFFKHSS--VNCV--LAPRYASSKLSYF  355 (628)
Q Consensus       289 ~~L~~aA~r--GV~VrILvwD~~-------gs~~~~~~~~~~~~~~~~~~~~~~l~~~g--v~~~--~~~~~~~~~~~~~  355 (628)
                      ++|.+||+|  ||+||||+ |..       |+...          ..+..+.+.|.++|  |++.  +.. +|..     
T Consensus        71 ~aL~~aa~r~~GV~Vril~-D~~~~~r~~~g~~~~----------~~~~~~~~~L~~~g~nv~v~~~~f~-~p~~-----  133 (458)
T 3hsi_A           71 DEIYRVKQENPHLDVKVLI-DWHRAQRNLLGAEKS----------ATNADWYCEQRQTYQLPDDPNMFFG-VPIN-----  133 (458)
T ss_dssp             HHHHHHHHHSTTCEEEEEE-ETTGGGSCCC---------------CCHHHHHHHHHHHHTCTTCCCCEEE-ECSS-----
T ss_pred             HHHHHHHhcCCCCEEEEEE-ECccccccccccccc----------cccHHHHHHHHhhCCCceEeeeecC-Cccc-----
Confidence            999999999  99999996 884       33211          00234556665555  6665  321 2322     


Q ss_pred             hhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCcee
Q 006854          356 KQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHD  435 (628)
Q Consensus       356 ~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD  435 (628)
                         ....+.++|+|++||||+        + ++||+||+++|+...                          .....|+|
T Consensus       134 ---~~~~~~r~H~Ki~viD~~--------v-~~~G~Ni~d~y~~~~--------------------------~~~~~drd  175 (458)
T 3hsi_A          134 ---TREVFGVLHVKGFVFDDT--------V-LYSGASINNVYLHQF--------------------------EKYRYDRY  175 (458)
T ss_dssp             ---SSGGGCCEECCEEEETTE--------E-EEESCCBSTTTTTCS--------------------------SCCEECCE
T ss_pred             ---cccccCcceeeEEEECCC--------E-EEEeeecCHHHhcCC--------------------------cccCcchh
Confidence               113567999999999997        8 556699999766431                          11235888


Q ss_pred             eeeeEeCHHHHHHHHHHHH--HHhhhcccchhhhhhccccccccc--chhh-ccccccccCccccccCCCccccCCCCcc
Q 006854          436 LHCRLDGPAAYDVLINFEQ--RWRKATKLTELTFKFKRVSHWRDD--YLIK-IGRISWILSPELSLKTNGTTIVPRDDNV  510 (628)
Q Consensus       436 ~~~~l~Gpav~~l~~~F~~--rW~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~  510 (628)
                      +  .+.||.+.|....|.+  .|+...-..     ++..  |...  .... ...+...+....     .. .++.    
T Consensus       176 ~--~i~g~~~~D~~~~~~~~~~~~g~~v~~-----l~~~--~~~~~~~~~~~~~~~~~~l~~~~-----~~-~~~~----  236 (458)
T 3hsi_A          176 Q--KITHAELADSMVNFINDYLLDFSAVYP-----LDVT--NRPRTKEIRGNIRAYRKDLAQNG-----EY-SLKS----  236 (458)
T ss_dssp             E--EEECHHHHHHHHHHHHHTTCCTTTCEE-----SSSS--CCCCGGGTHHHHHHHHHHHHHHC-----CC-CCSS----
T ss_pred             h--hhcCchHHHHHHHHHHhhhhcCccchh-----hHHH--hcccchhhHHHHHHHHHhhhhcc-----cc-cccc----
Confidence            4  4899999999998844  464321110     0000  0000  0000 000000000000     00 0111    


Q ss_pred             cccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccccccCcchhhHHHHHHHHHHHhccceEEEeecccccccCC
Q 006854          511 VRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYA  590 (628)
Q Consensus       511 ~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~  590 (628)
                            ...+...+|+.+..  ++.   +                  .+..+..+|+.+|.+|+++|||+||||+|+.  
T Consensus       237 ------~~~~~~~~~v~p~~--~~~---~------------------~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~~--  285 (458)
T 3hsi_A          237 ------AVKLPNVLSVSPLF--GLG---A------------------SGNELNQVIEDLFLQVQKKLVICTPYFNFPR--  285 (458)
T ss_dssp             ------CBSSCSSCEEEEEE--EES---S------------------SSCHHHHHHHHHHHTCSSEEEEECSSSCCCH--
T ss_pred             ------cCCCCceEEEecCC--CCC---C------------------chhHHHHHHHHHHHhcccEEEEEEeccCCCH--
Confidence                  00122335565522  110   0                  1357999999999999999999999999986  


Q ss_pred             CCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          591 WPSYKNAGADNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       591 ~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                                     +|+++|..|+++|.+++|++
T Consensus       286 ---------------~~~~aL~~Aa~rGV~VrIi~  305 (458)
T 3hsi_A          286 ---------------TLQHKIATLLENGKRVEIIV  305 (458)
T ss_dssp             ---------------HHHHHHHHHHTTTCEEEEEE
T ss_pred             ---------------HHHHHHHHHHHCCCeEEEEE
Confidence                           79999999999999999886

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.79  E-value=3.8e-19  Score=168.09  Aligned_cols=130  Identities=22%  Similarity=0.368  Sum_probs=106.4

Q ss_pred             ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854           10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP   89 (628)
Q Consensus        10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~   89 (628)
                      ..+....|.|.|+|++|++|+++|..+.++  +|.                              ...+++||||+|.++
T Consensus        22 ~~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~------------------------------~~~g~sDPYv~v~l~   69 (157)
T 2fk9_A           22 SGTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFK------------------------------KGHQLLDPYLTVSVD   69 (157)
T ss_dssp             --CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSS------------------------------SSCCCCCEEEEEEET
T ss_pred             chhccCccEEEEEEEEEECCCCcccccccc--ccc------------------------------cCCCCCCeEEEEEEC
Confidence            346688999999999999999887543211  111                              011248999999999


Q ss_pred             CeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccC----ceeEEEEEccCCCC
Q 006854           90 QATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG  164 (628)
Q Consensus        90 ~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~----~~~~~w~~L~~~~~  164 (628)
                      +....||++++++.||.|||+|.|.+.. ...|.|+|||+|.++ +++||.+.|++.++..+    ...+.||+|. +  
T Consensus        70 ~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~-~--  145 (157)
T 2fk9_A           70 QVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-P--  145 (157)
T ss_dssp             TEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB-S--
T ss_pred             CEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC-C--
Confidence            8777899999999999999999999875 468999999999998 99999999999999855    6789999993 2  


Q ss_pred             CCCCCCceEEEEEEEe
Q 006854          165 SPPKPGASIQLELKFT  180 (628)
Q Consensus       165 ~~~~~~g~i~l~l~y~  180 (628)
                           .|+|+|+++|.
T Consensus       146 -----~G~i~l~l~~~  156 (157)
T 2fk9_A          146 -----EGKVFVVITLT  156 (157)
T ss_dssp             -----SCEEEEEEEEC
T ss_pred             -----CcEEEEEEEEE
Confidence                 49999999874

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=1.2e-18  Score=160.51  Aligned_cols=125  Identities=28%  Similarity=0.478  Sum_probs=108.2

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~   94 (628)
                      ..|.|.|+|++|++|+.++. +.                                          +||||++.+.+.+ .
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~------------------------------------------~dpyv~v~~~~~~-~   40 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GK------------------------------------------PDPIVSVIFKDEK-K   40 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SC------------------------------------------CCEEEEEECSSCE-E
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CC------------------------------------------CCeEEEEEECCEe-E
Confidence            46899999999999998775 54                                          9999999998765 7


Q ss_pred             eeccccCCCCCeEeeEEEEEecCC----CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEE---ccCCCCCC
Q 006854           95 RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD---IIAPSGSP  166 (628)
Q Consensus        95 kT~v~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~---L~~~~~~~  166 (628)
                      ||++++++.||+|||+|.|.+..+    ...|.|+|||++.++ +++||.+.+++.++..+.....|++   |.+..+. 
T Consensus        41 kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~-  119 (140)
T 2dmh_A           41 KTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ-  119 (140)
T ss_dssp             ECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCC-
T ss_pred             EeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCC-
Confidence            999999999999999999998753    578999999999997 8999999999999998888889988   6555443 


Q ss_pred             CCCCceEEEEEEEeecCCC
Q 006854          167 PKPGASIQLELKFTPCDKN  185 (628)
Q Consensus       167 ~~~~g~i~l~l~y~p~~~~  185 (628)
                       ...|+|+|+++|.|.+..
T Consensus       120 -~~~G~l~l~~~~~p~~~~  137 (140)
T 2dmh_A          120 -DTGATIDLVIGYDPPSGP  137 (140)
T ss_dssp             -EEEEEEEEEEEECCCBSS
T ss_pred             -CCCCEEEEEEEEECCCCC
Confidence             346999999999996553

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.79  E-value=1.4e-18  Score=162.67  Aligned_cols=124  Identities=21%  Similarity=0.368  Sum_probs=101.4

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+    
T Consensus        18 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~   55 (153)
T 3b7y_A           18 NSRIVRVRVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMNG   55 (153)
T ss_dssp             TCEEEEEEEEEEESCC-------------------------------------------------CCEEEEEEEEETTTE
T ss_pred             CccEEEEEEEEeeCCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence            46789999999999998776654                                          99999999874    


Q ss_pred             -eeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCcee------EEEEEccCC
Q 006854           91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI------SRWYDIIAP  162 (628)
Q Consensus        91 -~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~------~~w~~L~~~  162 (628)
                       ....+|++++++.||.|||+|.|.+......|.|+|||++.++ +++||++.|++.++..+...      ..||+|...
T Consensus        56 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~  135 (153)
T 3b7y_A           56 VLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPR  135 (153)
T ss_dssp             EEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCS
T ss_pred             cceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccc
Confidence             3567999999999999999999999988888999999999997 99999999999999865432      589999543


Q ss_pred             CCCCCCCCceEEEEEEEee
Q 006854          163 SGSPPKPGASIQLELKFTP  181 (628)
Q Consensus       163 ~~~~~~~~g~i~l~l~y~p  181 (628)
                      . ...+..|+|+|+++|.|
T Consensus       136 ~-~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A          136 S-HKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             S-TTCCCCSEEEEEEEECC
T ss_pred             c-CCCCcceEEEEEEEEeC
Confidence            3 33356799999999987

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.78  E-value=8.9e-19  Score=160.51  Aligned_cols=124  Identities=24%  Similarity=0.485  Sum_probs=108.7

Q ss_pred             eeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeee
Q 006854           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV   93 (628)
Q Consensus        14 ~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~   93 (628)
                      -..|.|.|+|++|++|+.++..+.                                          +||||++.+.+.. 
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-   43 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNN------------------------------------------MDPYVQLTCRTQD-   43 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCS------------------------------------------SCCCEEEESSSCE-
T ss_pred             CCcEEEEEEEEeccCCCCcccCCC------------------------------------------cCceEEEEECCcc-
Confidence            367999999999999998876654                                          9999999998865 


Q ss_pred             eeecccc-CCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEecccccc-ccCceeEEEEEccCCCCCCCCCC
Q 006854           94 ARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTI-ATGELISRWYDIIAPSGSPPKPG  170 (628)
Q Consensus        94 ~kT~v~~-~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l-~~~~~~~~w~~L~~~~~~~~~~~  170 (628)
                      .+|++++ ++.||.|||+|.|.+......|.|+|||++.++ +++||.+.|+|.++ ..++....||+|. ..   .+..
T Consensus        44 ~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~---~~~~  119 (136)
T 1wfj_A           44 QKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KD---EEYK  119 (136)
T ss_dssp             EECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ET---TEEE
T ss_pred             ceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cC---CccC
Confidence            6999998 899999999999999987888999999999987 99999999999999 4566678999996 22   2467


Q ss_pred             ceEEEEEEEeecCC
Q 006854          171 ASIQLELKFTPCDK  184 (628)
Q Consensus       171 g~i~l~l~y~p~~~  184 (628)
                      |+|+|+++|.|.+.
T Consensus       120 G~i~l~l~~~p~~~  133 (136)
T 1wfj_A          120 GEIWVALSFKPSGP  133 (136)
T ss_dssp             EEEEEEEEEEECCS
T ss_pred             EEEEEEEEEEeCCC
Confidence            99999999999765

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.78  E-value=2e-18  Score=157.79  Aligned_cols=129  Identities=24%  Similarity=0.358  Sum_probs=110.9

Q ss_pred             CCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEE
Q 006854            7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV   86 (628)
Q Consensus         7 ~~~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v   86 (628)
                      +.+.......|.|.|+|++|++|+.++..+.                                          +||||++
T Consensus         3 ~~s~~~~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v   40 (133)
T 2ep6_A            3 SGSSGDVKDVGILQVKVLKAADLLAADFSGK------------------------------------------SDPFCLL   40 (133)
T ss_dssp             SCCCCSCCCSEEEEEEEEEEESCCCSSSSSC------------------------------------------CCEEEEE
T ss_pred             cccccccCCceEEEEEEEeeECCCCCCCCCC------------------------------------------cCeEEEE
Confidence            4455666678999999999999998876654                                          9999999


Q ss_pred             EECCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854           87 VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (628)
Q Consensus        87 ~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~  165 (628)
                      .+.+.. .+|++++++.||.|||+|.|.+......|.|+|||++.++ +++||++.+++.++..+.  ..|++|....++
T Consensus        41 ~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~  117 (133)
T 2ep6_A           41 ELGNDR-LQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLE  117 (133)
T ss_dssp             EETTEE-EECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTT
T ss_pred             EECCEE-EEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCC
Confidence            998865 6999999999999999999999988888999999999997 999999999999998664  589999654433


Q ss_pred             CCCCCceEEEEEEEee
Q 006854          166 PPKPGASIQLELKFTP  181 (628)
Q Consensus       166 ~~~~~g~i~l~l~y~p  181 (628)
                       ....|+|+|+++|..
T Consensus       118 -~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A          118 -QAFKGVIYLEMDLIY  132 (133)
T ss_dssp             -SCCSSEEEEEEEEEE
T ss_pred             -CccceEEEEEEEEEe
Confidence             356799999999864

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.77  E-value=1.1e-17  Score=155.71  Aligned_cols=124  Identities=23%  Similarity=0.435  Sum_probs=104.7

Q ss_pred             eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCe
Q 006854           12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA   91 (628)
Q Consensus        12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~   91 (628)
                      .....|.|.|+|++|++|+.++..+.                                          +||||++.++..
T Consensus        12 ~~~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~   49 (148)
T 3kwu_A           12 TSKWSAKISITVVCAQGLQAKDKTGS------------------------------------------SDPYVTVQVGKT   49 (148)
T ss_dssp             ---CCEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTE
T ss_pred             ccccccEEEEEEEeeeCCCCCCCCCC------------------------------------------cCeEEEEEECCE
Confidence            44557999999999999998876665                                          999999999775


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCC-----------C-CeeeEEEeccccccccCceeEEEEEc
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-----------G-AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~-----------~-~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      . .+|++++++.||.|||+|.|.+..+...|.|+|||++.+           + +++||.+.+++.++.  .....|++|
T Consensus        50 ~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L  126 (148)
T 3kwu_A           50 K-KRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNL  126 (148)
T ss_dssp             E-EECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEEC
T ss_pred             E-EECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEc
Confidence            4 699999999999999999999988888999999999986           4 999999999999983  456899999


Q ss_pred             cCCCCCCCCCCceEEEEEEEee
Q 006854          160 IAPSGSPPKPGASIQLELKFTP  181 (628)
Q Consensus       160 ~~~~~~~~~~~g~i~l~l~y~p  181 (628)
                      . +.+......|+|+|+++|..
T Consensus       127 ~-~~~~~~~~~G~i~l~l~~e~  147 (148)
T 3kwu_A          127 D-KRTDKSAVSGAIRLHISVEI  147 (148)
T ss_dssp             B-CSSTTCCCCCEEEEEEEEEC
T ss_pred             c-cCCCCCCCceEEEEEEEEEe
Confidence            5 33333456799999999853

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.77  E-value=3.2e-18  Score=157.31  Aligned_cols=130  Identities=17%  Similarity=0.381  Sum_probs=105.3

Q ss_pred             EeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCee
Q 006854           13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT   92 (628)
Q Consensus        13 ~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~   92 (628)
                      ....|.|.|+|++|++|++++..+.+.   ++                    .        +.+...+||||++.+++..
T Consensus         2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~---~g--------------------~--------~~~~~~~DPyv~v~l~~~~   50 (136)
T 1gmi_A            2 VVFNGLLKIKICEAVSLKPTAWSLRDA---VG--------------------P--------RPQTFLLDPYIALNVDDSR   50 (136)
T ss_dssp             CCEEEEEEEEEEEEESCCCCHHHHCC----CC--------------------S--------SCCCCCCCEEEEEEETTEE
T ss_pred             cccceEEEEEEEeCcCCCCcccccccc---cc--------------------c--------ccCCcCcCcEEEEEECCeE
Confidence            357899999999999999876443200   10                    0        0111238999999998877


Q ss_pred             eeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccC--ceeEEEEEccCCCCCCCCC
Q 006854           93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDIIAPSGSPPKP  169 (628)
Q Consensus        93 ~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~  169 (628)
                      ..+|++++++.||.|||+|.|.+... ..|.|+|||+|.++ +++||.+.+++.++..+  ...+.|++|. +       
T Consensus        51 ~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~-~-------  121 (136)
T 1gmi_A           51 IGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE-P-------  121 (136)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB-S-------
T ss_pred             eeeeeEECCCcCCccCCEEEEEecCC-CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC-C-------
Confidence            78999999999999999999998765 78999999999988 99999999999999864  3458999983 2       


Q ss_pred             CceEEEEEEEeec
Q 006854          170 GASIQLELKFTPC  182 (628)
Q Consensus       170 ~g~i~l~l~y~p~  182 (628)
                      .|+|+|+++|.+.
T Consensus       122 ~G~i~l~l~~~~~  134 (136)
T 1gmi_A          122 EGKVYVIIDLSGS  134 (136)
T ss_dssp             SCEEEEEEEEEEE
T ss_pred             CeEEEEEEEEEec
Confidence            4999999999875

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.76  E-value=8.3e-18  Score=161.42  Aligned_cols=124  Identities=20%  Similarity=0.369  Sum_probs=99.2

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-----
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-----   90 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-----   90 (628)
                      .|.|.|+|++|++|+.++..+.                                          +||||++.+.+     
T Consensus         7 ~g~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~   44 (176)
T 3m7f_B            7 TRVVRVKVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMSGI   44 (176)
T ss_dssp             CEEEEEEEEEEESCC---CCCC------------------------------------------CCEEEEEEEEETTTEE
T ss_pred             cEEEEEEEEEeeCCCCcCCCCC------------------------------------------cCcEEEEEEECCCCCc
Confidence            5889999999999998876665                                          99999999874     


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCcee-E-----EEEEccCCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI-S-----RWYDIIAPS  163 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~-~-----~w~~L~~~~  163 (628)
                      ..+.+|++++++.||.|||+|.|.+......|.|+|||++.++ +++||.+.|+|.++..+... +     .||+|... 
T Consensus        45 ~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~-  123 (176)
T 3m7f_B           45 LTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR-  123 (176)
T ss_dssp             EEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCS-
T ss_pred             ccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEcccc-
Confidence            1567999999999999999999999987788999999999997 89999999999999866433 2     79999533 


Q ss_pred             CCCCCCCceEEEEEEEeec
Q 006854          164 GSPPKPGASIQLELKFTPC  182 (628)
Q Consensus       164 ~~~~~~~g~i~l~l~y~p~  182 (628)
                      ....+..|+|+|+|+|.|.
T Consensus       124 ~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B          124 SHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             STTCCCCSEEEEEEEECC-
T ss_pred             CCCCccCEEEEEEEEEEeC
Confidence            3334567999999999997

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.75  E-value=8e-18  Score=151.97  Aligned_cols=118  Identities=25%  Similarity=0.424  Sum_probs=99.4

Q ss_pred             ceEEEEEEEEeeCCCCCC---CCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--
Q 006854           16 HGDLDLKIIRARRLPNMD---MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--   90 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--   90 (628)
                      .|.|.|+|++|++|+.++   ..+                                          .+||||++.+.+  
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g------------------------------------------~~dpyv~v~~~~~~   39 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLD------------------------------------------TPDPYVELFISTTP   39 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHC------------------------------------------CCCEEEEEECTTST
T ss_pred             CcEEEEEEEeeeCCCCCCccccCC------------------------------------------CCCCEEEEEEccCC
Confidence            588999999999999752   222                                          299999999986  


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecC-CCceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP  169 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~  169 (628)
                      ....||++++++.||.|||+|.|.+.. ....|.|+|||++.+++++||.+.++|.++..+.....|++|. +.     .
T Consensus        40 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~-~~-----~  113 (126)
T 1rlw_A           40 DSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN-QV-----T  113 (126)
T ss_dssp             TCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEET-TT-----E
T ss_pred             CceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcC-CC-----c
Confidence            356899999999999999999999954 4678999999999988999999999999999999999999994 32     3


Q ss_pred             CceEEEEEEEee
Q 006854          170 GASIQLELKFTP  181 (628)
Q Consensus       170 ~g~i~l~l~y~p  181 (628)
                      .|+|+++|..+|
T Consensus       114 ~g~i~~~le~~~  125 (126)
T 1rlw_A          114 EMVLEMSLEVAS  125 (126)
T ss_dssp             EEEEEEEEECCC
T ss_pred             eEEEEEEEEeCC
Confidence            477777776554

>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A

Probab=99.75  E-value=1.8e-18  Score=169.49  Aligned_cols=136  Identities=14%  Similarity=0.190  Sum_probs=102.4

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~  320 (628)
                      ++.|.+|+++|++|+++|+|++|+|+.                 ..|.++|++|++|||+||||+ |......       
T Consensus        45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~-----------------~~i~~aL~~aa~rGV~Vrii~-D~~~~~~-------   99 (196)
T 4ggj_A           45 ESSLSRLLRALLAARSSLELCLFAFSS-----------------PQLGRAVQLLHQRGVRVRVIT-DCDYMAL-------   99 (196)
T ss_dssp             CCHHHHHHHHHHTCSSEEEEEESCBCC-----------------HHHHHHHHHHHHTTCEEEEEE-SSCCC---------
T ss_pred             HHHHHHHHHHHHHhheEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCcEEEEE-ecccccc-------
Confidence            578999999999999999999998742                 479999999999999999996 8642211       


Q ss_pred             CcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCC
Q 006854          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (628)
Q Consensus       321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~  400 (628)
                            .....+.|..+||.+.....                ....|+|++|||++        ++|+||+|++...+. 
T Consensus       100 ------~~~~~~~l~~~gi~v~~~~~----------------~~~~H~K~~viD~~--------~~~~GS~N~t~~~~~-  148 (196)
T 4ggj_A          100 ------NGSQIGLLRKAGIQVRHDQD----------------LGYMHHKFAIVDKK--------VLITGSLNWTTQAIQ-  148 (196)
T ss_dssp             -------CCHHHHHHHTTCEEEECCS----------------SSCCCCEEEEETTT--------EEEEESCCBCHHHHH-
T ss_pred             ------cHHHHHHHHhcCCCcccccc----------------cccccCcEEEEcce--------EEEecCccCChhhhc-
Confidence                  12235668889999874211                12459999999998        999999998873221 


Q ss_pred             CCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhccc
Q 006854          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKL  462 (628)
Q Consensus       401 ~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~  462 (628)
                                                    ..|.+..+.-.+++|.++.+.|.+.|+.+...
T Consensus       149 ------------------------------~n~E~~~~i~~~~~~~~~~~~F~~~W~~~~p~  180 (196)
T 4ggj_A          149 ------------------------------NNRENVLIMEDTEYVRLFLEEFERIWEEFDPT  180 (196)
T ss_dssp             ------------------------------HCCEEEEEECCHHHHHHHHHHHHHHHHHTCCC
T ss_pred             ------------------------------ccceeEEEEECHHHHHHHHHHHHHHHHhCCCC
Confidence                                          12334444444568999999999999876543

>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*

Probab=99.74  E-value=1.6e-17  Score=189.50  Aligned_cols=204  Identities=15%  Similarity=0.136  Sum_probs=148.4

Q ss_pred             cchHHHHHHHHHhccc-----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcc
Q 006854          241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL  315 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~-----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~  315 (628)
                      .+.|+.+++.|++|++     +|+|+.|.+.+       +         ..+.++|++||++||+|+||+ |..+.... 
T Consensus       346 ~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~-------d---------~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~-  407 (687)
T 1xdp_A          346 YHTFEHVLELLRQASFDPSVLAIKINIYRVAK-------D---------SRIIDSMIHAAHNGKKVTVVV-ELQARFDE-  407 (687)
T ss_dssp             TBCTHHHHHHHHHHHHCTTEEEEEEEESSCCT-------T---------CHHHHHHHHHHHTTCEEEEEE-CTTCSSTT-
T ss_pred             hhhhhhHHHHHHHHhhCCcceEEEEEeeeecC-------c---------HHHHHHHHHHHhcCCEEEEEE-CCCcccch-
Confidence            3578999999999997     99998886533       1         589999999999999999996 87763210 


Q ss_pred             cccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceE---EEEcccc
Q 006854          316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT---AFIGGID  392 (628)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~v---afvGG~n  392 (628)
                               .....+.+.|.++||++...  .+              .+++|+|++|||++.+|    .+   ||+||.|
T Consensus       408 ---------~~n~~~~~~L~~aGV~V~~~--~~--------------~~k~H~Ki~VID~re~~----~i~~~a~iGS~N  458 (687)
T 1xdp_A          408 ---------EANIHWAKRLTEAGVHVIFS--AP--------------GLKIHAKLFLISRKENG----EVVRYAHIGTGN  458 (687)
T ss_dssp             ---------TTTTTTTHHHHHHTCEEEEC--CT--------------TCEECCEEEEEEEEETT----EEEEEEEEESSC
T ss_pred             ---------hhHHHHHHHHHHCCCEEEEe--cC--------------CccccceEEEEEeccCC----eEEEEEEEeCCc
Confidence                     01234566788899998741  11              24679999999952100    25   9999999


Q ss_pred             CCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhcccchhhhhhcc
Q 006854          393 LCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFKR  471 (628)
Q Consensus       393 i~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~~~~~~~~~~~  471 (628)
                      +....+                                ..|+|+++.+.|| +|.++...|...|..+....        
T Consensus       459 ~d~rs~--------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~~~--------  498 (687)
T 1xdp_A          459 FNEKTA--------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPYRPVT--------  498 (687)
T ss_dssp             SCTTGG--------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTTSCCC--------
T ss_pred             CCcchh--------------------------------hhcceEEEEEeCHHHHHHHHHHHHHHHhhccccc--------
Confidence            987321                                2589999999987 69999999999997643221        


Q ss_pred             cccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhccccc
Q 006854          472 VSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLI  551 (628)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~  551 (628)
                                                      +..                   ++.+         |..          
T Consensus       499 --------------------------------~~~-------------------l~~s---------P~~----------  508 (687)
T 1xdp_A          499 --------------------------------FDY-------------------LMVS---------PQN----------  508 (687)
T ss_dssp             --------------------------------CSS-------------------CEEE---------TTS----------
T ss_pred             --------------------------------hhh-------------------eeeC---------Cch----------
Confidence                                            000                   0001         000          


Q ss_pred             cccCcchhhHHHHHHHHHHHhccc----eEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          552 CAKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       552 ~~~~~~~e~~I~~ay~~aI~~Ak~----~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                            ....+...+...|+.|++    +|+|.++| +|+.                 .|.++|.+|+++|++++++|
T Consensus       509 ------~~~~l~~~I~~ei~~A~~g~~~~I~i~~~~-lpD~-----------------~ii~AL~~Aa~rGV~VrLiv  562 (687)
T 1xdp_A          509 ------SRRLLYEMVDREIANAQQGLPSGITLKLNN-LVDK-----------------GLVDRLYAASSSGVPVNLLV  562 (687)
T ss_dssp             ------HHHHHHHHHHHHHHHHHTTCCCCEEEEESC-BCCH-----------------HHHHHHHHHHHTTCCEEEEE
T ss_pred             ------hhHHHHHHHHHHHHHHHcCCCCEEEEEeCC-CCCH-----------------HHHHHHHHHHHCCCEEEEEE
Confidence                  123455666677888887    89999998 5664                 79999999999999999997

>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4

Probab=99.72  E-value=1.7e-16  Score=180.11  Aligned_cols=207  Identities=11%  Similarity=0.120  Sum_probs=147.5

Q ss_pred             cchHHHHHHHHHhccc-----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcc
Q 006854          241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL  315 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~-----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~  315 (628)
                      .+.|+.+++.|++|++     +|.++.|++..                ...|.++|++||++||+|++|+ | .++..  
T Consensus       351 ~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~----------------ds~Iv~ALi~AA~rGv~V~vLv-e-l~arf--  410 (705)
T 2o8r_A          351 YYTYDYVVRLLMEAAISPDVSEIRLTQYRVAE----------------NSSIISALEAAAQSGKKVSVFV-E-LKARF--  410 (705)
T ss_dssp             TBCSHHHHHHHHHHHTCTTEEEEEEEESCCCS----------------CCHHHHHHHHHHHTTCEEEEEE-C-CCSCC--
T ss_pred             hHhHHHHHHHHHHhccCCCceEEEEEEEEEcC----------------CHHHHHHHHHHHHCCCEEEEEE-e-CCCCc--
Confidence            4679999999999999     99999997742                1589999999999999999996 8 66543  


Q ss_pred             cccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecC--CCCCCcceEEEEccccC
Q 006854          316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ--ASGNNRKITAFIGGIDL  393 (628)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~--~~~~~~~~vafvGG~ni  393 (628)
                             .......+.+.|+++||+|.+  .+              .++++|+|++|||++  .+|.- +..+.+|.-|+
T Consensus       411 -------dee~ni~wa~~Le~aGv~Vv~--g~--------------~~lk~H~Ki~lIdrr~~~~g~~-~~y~~igtGN~  466 (705)
T 2o8r_A          411 -------DEENNLRLSERMRRSGIRIVY--SM--------------PGLKVHAKTALILYHTPAGERP-QGIALLSTGNF  466 (705)
T ss_dssp             -----------CHHHHHHHHHHTCEEEE--CC--------------TTCCBCCCEEEEEECCCSSSCC-CEEEEEESSCS
T ss_pred             -------chhhhHHHHHHHHHCCCEEEE--cc--------------CCCCceeEEEEEecccccCCce-eEEEeccccce
Confidence                   111235678899999999974  11              346899999999986  22110 11233332222


Q ss_pred             CCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhcccchhhhhhccc
Q 006854          394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFKRV  472 (628)
Q Consensus       394 ~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~~~~~~~~~~~~  472 (628)
                      .+                                ....-|.|+++...+| ++.++...|...|......          
T Consensus       467 n~--------------------------------~tariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~~~----------  504 (705)
T 2o8r_A          467 NE--------------------------------TTARIYSDTTLMTANTDIVHDVYRLFRILDGDPEPA----------  504 (705)
T ss_dssp             SC--------------------------------CCSSCEEEEEEEECCHHHHHHHHHHHHHHTTCCCCS----------
T ss_pred             ee--------------------------------eEEEEEeeeeeeecChHHHHHHHHHHHHHhCCCCCC----------
Confidence            22                                1122477888888775 6699999996666321000          


Q ss_pred             ccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeEEeeeccCCccCCCCCCccchhcccccc
Q 006854          473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC  552 (628)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~  552 (628)
                                                                      .. .|++.+         |.            
T Consensus       505 ------------------------------------------------~~-~~l~~s---------P~------------  514 (705)
T 2o8r_A          505 ------------------------------------------------RF-SRLLVA---------RY------------  514 (705)
T ss_dssp             ------------------------------------------------CC-SSCEET---------TT------------
T ss_pred             ------------------------------------------------Cc-eEEEEC---------Cc------------
Confidence                                                            00 123321         11            


Q ss_pred             ccCcchhhHHHHHHHHHHHhccc----eEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       553 ~~~~~~e~~I~~ay~~aI~~Ak~----~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                          .....|.+.+..+|.+|++    +|+|.++| +|+.                 +|.++|.+|+.+|+++++||
T Consensus       515 ----~~~~~i~~~i~~eI~~Ak~G~~a~I~ik~n~-l~D~-----------------~ii~aL~~As~~GV~V~LIV  569 (705)
T 2o8r_A          515 ----NMGEAITNLIEREIENVKRGKRGYMLLKMNG-LQDK-----------------NVITQLYRASEAGVEIDLIV  569 (705)
T ss_dssp             ----THHHHHHHHHHHHHHHHHTTCCCEEEEEESC-BCCH-----------------HHHHHHHHHHHTTCEEEEEE
T ss_pred             ----hHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCCH-----------------HHHHHHHHHHHCCCeEEEEE
Confidence                1246799999999999999    99999999 7765                 79999999999999999998

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.71  E-value=1.2e-16  Score=145.80  Aligned_cols=120  Identities=19%  Similarity=0.352  Sum_probs=100.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-eeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR   95 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-~~~~k   95 (628)
                      ..|.|+|++|++|++++..+.                                          +||||++.+.+ ....+
T Consensus         5 ~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDpyv~v~~~~~~~~~k   42 (132)
T 3pyc_A            5 IKIRLTVLCAKNLAKKDFFRL------------------------------------------PDPFAKIVVDGSGQCHS   42 (132)
T ss_dssp             EEEEEEEEEEESCCCCSTTCC------------------------------------------CCEEEEEEETTTCCEEE
T ss_pred             EEEEEEEEEeECCCCCCCCCC------------------------------------------cCeEEEEEECCCCceEE
Confidence            579999999999998887665                                          99999999975 56689


Q ss_pred             eccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC----CeeeEEEecccccc-ccCceeEEEEEccCCC-CCCCCC
Q 006854           96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTI-ATGELISRWYDIIAPS-GSPPKP  169 (628)
Q Consensus        96 T~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~----~~~iG~~~i~l~~l-~~~~~~~~w~~L~~~~-~~~~~~  169 (628)
                      |++++++.||.|||+|.|.+.... .|.|+|||++.++    +++||.+.+++..+ ........|++|.... ....+.
T Consensus        43 T~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~  121 (132)
T 3pyc_A           43 TDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAV  121 (132)
T ss_dssp             CCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCC
T ss_pred             CCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCce
Confidence            999999999999999999998754 5999999999886    69999999999988 3444456899996543 233456


Q ss_pred             CceEEEEEEE
Q 006854          170 GASIQLELKF  179 (628)
Q Consensus       170 ~g~i~l~l~y  179 (628)
                      .|+|.++|++
T Consensus       122 ~G~i~v~l~~  131 (132)
T 3pyc_A          122 RGQIVVSLQT  131 (132)
T ss_dssp             CSEEEEEEEE
T ss_pred             eEEEEEEEEc
Confidence            8999999975

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.71  E-value=5.2e-17  Score=155.92  Aligned_cols=133  Identities=17%  Similarity=0.256  Sum_probs=104.7

Q ss_pred             CceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEE
Q 006854            9 KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV   88 (628)
Q Consensus         9 ~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l   88 (628)
                      +.......++|.|+|++|++|+..+..+.                                          +||||+|.+
T Consensus        28 ~~~~~~~~~~L~V~V~~A~~L~~~~~~~~------------------------------------------sDPYv~v~~   65 (173)
T 2nq3_A           28 SMGSLTMKSQLQITVISAKLKENKKNWFG------------------------------------------PSPYVEVTV   65 (173)
T ss_dssp             ---CCSCCEEEEEEEEEEEECCCC--CCC------------------------------------------CCEEEEEEE
T ss_pred             cccccCCceEEEEEEEEeECCCCcccCCC------------------------------------------CCeEEEEEE
Confidence            33345578899999999999985433332                                          899999999


Q ss_pred             CCeeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCc-----eeEEEEEccCC
Q 006854           89 PQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE-----LISRWYDIIAP  162 (628)
Q Consensus        89 ~~~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~  162 (628)
                      ++ .+.||++++++.||+|||+|.|.+.. ...|.|+|||+|.++ +++||.+.+++.++..+.     ....|++|...
T Consensus        66 ~~-~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~  143 (173)
T 2nq3_A           66 DG-QSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD  143 (173)
T ss_dssp             TT-EEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES
T ss_pred             CC-EEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC
Confidence            88 55799999999999999999999964 788999999999997 899999999999987432     23679999654


Q ss_pred             CCCCCCCCceEEEEEEEeecCCCC
Q 006854          163 SGSPPKPGASIQLELKFTPCDKNP  186 (628)
Q Consensus       163 ~~~~~~~~g~i~l~l~y~p~~~~~  186 (628)
                      . ...+..|+|.++|+|.+.+...
T Consensus       144 ~-~~~~~~G~L~v~l~~l~~~~~~  166 (173)
T 2nq3_A          144 K-EPTETIGDLSICLDGLQLESEV  166 (173)
T ss_dssp             S-CTTSEEEEEEEEEESEECC---
T ss_pred             C-CCCcccEEEEEEEeeeecchhh
Confidence            2 2345679999999999875443

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.70  E-value=1.1e-16  Score=146.94  Aligned_cols=115  Identities=17%  Similarity=0.399  Sum_probs=97.7

Q ss_pred             CCCCCCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCc
Q 006854            3 AGDDSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDP   82 (628)
Q Consensus         3 ~~~~~~~~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp   82 (628)
                      -++.+-.++..+..+.|.|+|++|++|+. +..+.                                          +||
T Consensus         6 ~~~~~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~------------------------------------------~DP   42 (134)
T 2b3r_A            6 HGSGAVKLSVSYRNGTLFIMVMHIKDLVT-EDGAD------------------------------------------PNP   42 (134)
T ss_dssp             -CCCEEEEEEEEETTEEEEEEEEEECCCC-TTSCC------------------------------------------CCE
T ss_pred             cccEEEEEEEeecCCEEEEEEEEeeCCCC-CCCCC------------------------------------------CCe
Confidence            34445566788899999999999999995 44443                                          999


Q ss_pred             EEEEEECC----eeeeeeccccCCCCCeEeeEEEEE-ecC---CCceEEEEEEEcCCCC-CeeeEEEeccccccccCcee
Q 006854           83 YVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI  153 (628)
Q Consensus        83 yv~v~l~~----~~~~kT~v~~~~~~P~wne~f~~~-~~~---~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~  153 (628)
                      ||++.+.+    ..+.||++++++.||+|||+|.|. +..   ....|.|+|||++.++ +++||++.++|.++..+...
T Consensus        43 yv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~  122 (134)
T 2b3r_A           43 YVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKET  122 (134)
T ss_dssp             EEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCE
T ss_pred             EEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCc
Confidence            99999832    345799999999999999999999 764   3468999999999998 89999999999999988889


Q ss_pred             EEEEEcc
Q 006854          154 SRWYDII  160 (628)
Q Consensus       154 ~~w~~L~  160 (628)
                      ..||+|.
T Consensus       123 ~~W~~L~  129 (134)
T 2b3r_A          123 VKWYQLT  129 (134)
T ss_dssp             EEEEECB
T ss_pred             ceeEECC
Confidence            9999994

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.67  E-value=7.8e-16  Score=158.22  Aligned_cols=127  Identities=29%  Similarity=0.487  Sum_probs=109.5

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT   92 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~   92 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+  ..
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~   54 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK   54 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSS------------------------------------------CCEEEEEEEETCTTS
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeEEEEEEEcCCCc
Confidence            67899999999999998876654                                          99999999964  34


Q ss_pred             eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCC
Q 006854           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK  168 (628)
Q Consensus        93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~  168 (628)
                      ..+|++++++.||.|||+|.|.+...   ...|.|+|||.+.++ +++||.+.++|.++..+.....|++|....+....
T Consensus        55 ~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~  134 (284)
T 2r83_A           55 KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE  134 (284)
T ss_dssp             CEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCC
T ss_pred             eEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeecccccccc
Confidence            57999999999999999999998753   468999999999987 89999999999999988888999999655443345


Q ss_pred             CCceEEEEEEEeecC
Q 006854          169 PGASIQLELKFTPCD  183 (628)
Q Consensus       169 ~~g~i~l~l~y~p~~  183 (628)
                      ..|+|.++++|.|..
T Consensus       135 ~~G~i~l~l~~~p~~  149 (284)
T 2r83_A          135 KLGDICFSLRYVPTA  149 (284)
T ss_dssp             CCCEEEEEEEEETTT
T ss_pred             ccccEEEEEEecCcC
Confidence            679999999998753

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.67  E-value=4.1e-16  Score=145.91  Aligned_cols=105  Identities=32%  Similarity=0.530  Sum_probs=92.9

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT   92 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~   92 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+  ..
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~   77 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK   77 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETTCCS
T ss_pred             CCCEEEEEEEEeECCCCccCCCC------------------------------------------cCeEEEEEEEcCCCc
Confidence            56899999999999998876654                                          99999999953  45


Q ss_pred             eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccC
Q 006854           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA  161 (628)
Q Consensus        93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~  161 (628)
                      ..||++++++.||+|||+|.|.+...   ...|.|+|||++.++ +++||.+.+++.++..+....+|++|..
T Consensus        78 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A           78 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             eEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            67999999999999999999988753   578999999999997 9999999999999998888999999953

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.67  E-value=4.6e-16  Score=144.97  Aligned_cols=108  Identities=22%  Similarity=0.390  Sum_probs=94.4

Q ss_pred             eeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854           11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ   90 (628)
Q Consensus        11 ~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~   90 (628)
                      .+.|..+.|.|+|++|++|+.++..+.                                          +||||++.+.+
T Consensus        25 ~l~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~   62 (149)
T 1a25_A           25 QAHIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIP   62 (149)
T ss_dssp             EEEESSSEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEES
T ss_pred             EEEecCCEEEEEEEEeeCCCCCCCCCC------------------------------------------cCeEEEEEEEC
Confidence            366778999999999999998876654                                          99999999974


Q ss_pred             ----eeeeeeccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccC
Q 006854           91 ----ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA  161 (628)
Q Consensus        91 ----~~~~kT~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~  161 (628)
                          ....||++++++.||.|||+|.|.+...  ...|.|+|||++.++ +++||.+.|+|.++..+ ...+||+|..
T Consensus        63 ~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~  139 (149)
T 1a25_A           63 DPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  139 (149)
T ss_dssp             CTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence                4567999999999999999999998764  357999999999997 99999999999999866 4789999953

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.66  E-value=1.7e-16  Score=146.38  Aligned_cols=110  Identities=27%  Similarity=0.424  Sum_probs=95.2

Q ss_pred             ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854           10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP   89 (628)
Q Consensus        10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~   89 (628)
                      +.+.|..|.|.|+|++|++|+.++..+.                                          +||||++.+.
T Consensus        11 ~~l~y~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~   48 (142)
T 1rh8_A           11 LQINYDLGNLIIHILQARNLVPRDNNGY------------------------------------------SDPFVKVYLL   48 (142)
T ss_dssp             EEEEEETTEEEEEEEEEESCCCCSSSSC------------------------------------------SCCEEEEEET
T ss_pred             EEEEEcCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCceEEEEEe
Confidence            3467788999999999999998876664                                          9999999998


Q ss_pred             Ce-------------eeeeeccccCCCCCeEeeEEEEE-ecC---CCceEEEEEEEcCCCC-CeeeEEEeccccccccCc
Q 006854           90 QA-------------TVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE  151 (628)
Q Consensus        90 ~~-------------~~~kT~v~~~~~~P~wne~f~~~-~~~---~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~  151 (628)
                      +.             ...||++++++.||.|||+|.|. +..   ....|.|+|||++.++ +++||.+.|+|.++..+.
T Consensus        49 ~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~  128 (142)
T 1rh8_A           49 PGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD  128 (142)
T ss_dssp             TSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT
T ss_pred             cCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCC
Confidence            63             34799999999999999999997 543   3568999999999997 899999999999998777


Q ss_pred             eeEEEEEccC
Q 006854          152 LISRWYDIIA  161 (628)
Q Consensus       152 ~~~~w~~L~~  161 (628)
                      ....||+|..
T Consensus       129 ~~~~W~~L~~  138 (142)
T 1rh8_A          129 NTPRWYPLKE  138 (142)
T ss_dssp             TCCEEEECBC
T ss_pred             CCCeEEECCc
Confidence            7889999953

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.66  E-value=4.7e-16  Score=148.67  Aligned_cols=110  Identities=22%  Similarity=0.400  Sum_probs=96.0

Q ss_pred             eeEeeceEEEEEEEEeeCCCCCCC-CchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854           11 KVIYLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP   89 (628)
Q Consensus        11 ~~~~~~g~L~v~I~~a~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~   89 (628)
                      .+.|..+.|.|+|++|++|+.++. .+.                                          +||||++.+.
T Consensus        24 ~l~y~~~~L~V~v~~a~~L~~~d~~~g~------------------------------------------~DPyv~v~l~   61 (171)
T 2q3x_A           24 GMEDKKGQLEVEVIRARSLTQKPGSKST------------------------------------------PAPYVKVYLL   61 (171)
T ss_dssp             EEEEETTEEEEEEEEEESCCCCC---CC------------------------------------------CEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEeeCCCCCCcCCCC------------------------------------------CCceEEEEEE
Confidence            356788999999999999998874 443                                          9999999986


Q ss_pred             C----eeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEE-EcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854           90 Q----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP  162 (628)
Q Consensus        90 ~----~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~-d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  162 (628)
                      +    ..+.||++++++.||+|||+|.|.+......|.|+|| |+|.++ +++||.+.++|.++..+....+||+|...
T Consensus        62 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A           62 ENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             ETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            4    2367999999999999999999999877888999999 999998 89999999999999988889999999543

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.65  E-value=4.9e-16  Score=143.55  Aligned_cols=104  Identities=33%  Similarity=0.531  Sum_probs=92.2

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT   92 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~   92 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+  ..
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~   69 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK   69 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBC------------------------------------------CCEEEEEEEESCCSC
T ss_pred             CCCEEEEEEEEecCCCCCCCCCC------------------------------------------cCcEEEEEEECCCCc
Confidence            67889999999999998776554                                          99999999943  44


Q ss_pred             eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEcc
Q 006854           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (628)
Q Consensus        93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~  160 (628)
                      ..+|++++++.||.|||+|.|.+...   ...|.|+|||++.++ +++||.+.++|.++..+.....|++|.
T Consensus        70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  141 (143)
T 3f04_A           70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred             cEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence            68999999999999999999998754   368999999999997 899999999999999998899999994

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.65  E-value=3e-16  Score=146.05  Aligned_cols=106  Identities=16%  Similarity=0.309  Sum_probs=91.1

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      .+.|.|+|++|++|+.++ ..+.                                          +||||++.+.+    
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~l~~~~~~   59 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKR------------------------------------------SNPYVKTYLLPDKSR   59 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTB------------------------------------------CCEEEEEEEETCCSG
T ss_pred             CCEEEEEEEEecCCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence            689999999999999876 3443                                          99999999864    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS  163 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  163 (628)
                      ..+.+|++++++.||.|||+|.|.+...   ...|.|+|||+|.++ +++||.+.++|.++..+.....||+|....
T Consensus        60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A           60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            2367999999999999999999998774   346999999999997 899999999999999877788999995443

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.3e-15  Score=140.36  Aligned_cols=105  Identities=29%  Similarity=0.464  Sum_probs=91.9

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT   92 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~   92 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+  ..
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~   61 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKH   61 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEEEEESCCSS
T ss_pred             CCCEEEEEEEEeECCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence            57889999999999998876554                                          99999999953  45


Q ss_pred             eeeeccccCCCCCeEeeEEEEEecC----CCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccC
Q 006854           93 VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA  161 (628)
Q Consensus        93 ~~kT~v~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~  161 (628)
                      ..||++++++.||+|||+|.|.+.+    ....|.|+|||++.++ +++||++.+++.++..+.....|++|..
T Consensus        62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  135 (141)
T 2d8k_A           62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP  135 (141)
T ss_dssp             EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred             cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence            6799999999999999999998533    2567999999999987 9999999999999998888899999953

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.64  E-value=2.4e-16  Score=148.50  Aligned_cols=104  Identities=25%  Similarity=0.415  Sum_probs=91.1

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC---e
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A   91 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---~   91 (628)
                      ..+.|.|+|++|++|++++..+.                                          +||||++.+.+   .
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~------------------------------------------sDPyVkv~l~~~~~~   78 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQD------------------------------------------QKVNIRVAVLPCSES   78 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCC------------------------------------------SEEEEEEEEESCSCH
T ss_pred             CCCEEEEEEEEccCcCCcccCCC------------------------------------------CCEEEEEEEecCCCC
Confidence            46899999999999998876665                                          99999999965   2


Q ss_pred             --eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccc-cCceeEEEEEcc
Q 006854           92 --TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRWYDII  160 (628)
Q Consensus        92 --~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~-~~~~~~~w~~L~  160 (628)
                        .+.||++++++.||+|||+|.|.+...   ...|.|+|||+|.++ +++||.+.++|.++. .+....+||+|.
T Consensus        79 ~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A           79 TTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             HHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             CccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence              368999999999999999999998753   467999999999998 899999999999996 467788999984

>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A

Probab=99.64  E-value=7e-16  Score=144.20  Aligned_cols=136  Identities=16%  Similarity=0.245  Sum_probs=107.1

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~  320 (628)
                      ..+++.+.++|++|+++|+|++|.|..                 ..+.++|.+|++|||+||||+ |..++...      
T Consensus        13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~-----------------~~i~~aL~~a~~rGV~Vril~-~~~~~~~~------   68 (155)
T 1byr_A           13 GSARVLVLSAIDSAKTSIRMMAYSFTA-----------------PDIMKALVAAKKRGVDVKIVI-DERGNTGR------   68 (155)
T ss_dssp             THHHHHHHHHHHHCSSEEEEEESSBCC-----------------HHHHHHHHHHHHTTCEEEEEE-ESTTCCSH------
T ss_pred             CcHHHHHHHHHHHHhhEEEEEEEEeCC-----------------HHHHHHHHHHHHCCCEEEEEE-eCcccccc------
Confidence            367999999999999999999886621                 479999999999999999996 76653210      


Q ss_pred             CcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCC
Q 006854          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (628)
Q Consensus       321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~  400 (628)
                           ......+.|.++|+++....  +              ..++|.|++|||++        ++++||+|++...+  
T Consensus        69 -----~~~~~~~~L~~~gv~v~~~~--~--------------~~~~H~K~~iiD~~--------~~~iGS~N~~~~~~--  117 (155)
T 1byr_A           69 -----ASIAAMNYIANSGIPLRTDS--N--------------FPIQHDKVIIVDNV--------TVETGSFNFTKAAE--  117 (155)
T ss_dssp             -----HHHHHHHHHHHTTCCEEEEC--S--------------SSCCCCCEEEETTT--------EEEEESCCBSHHHH--
T ss_pred             -----ccHHHHHHHHHCCCeEEEcC--C--------------cccccceEEEECCC--------EEEEECCCCCcccc--
Confidence                 13456677888999987521  1              12569999999998        99999999987211  


Q ss_pred             CCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH--HHHHHHHHHHHHHhhhcc
Q 006854          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKATK  461 (628)
Q Consensus       401 ~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp--av~~l~~~F~~rW~~~~~  461 (628)
                                                    ..|++..+.++|+  .+.++...|.+.|..+..
T Consensus       118 ------------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~~  150 (155)
T 1byr_A          118 ------------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGRD  150 (155)
T ss_dssp             ------------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCEE
T ss_pred             ------------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCCC
Confidence                                          2467999999993  899999999999987643

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.62  E-value=2e-15  Score=139.17  Aligned_cols=104  Identities=29%  Similarity=0.467  Sum_probs=91.4

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+    
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~   64 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGL------------------------------------------ADPYVKLHLLPGASK   64 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSC------------------------------------------CCEEEEEEEESCCSG
T ss_pred             CCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence            67899999999999998876554                                          99999999975    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEcc
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~  160 (628)
                      ....||++++++.||.|||+|.|. +...   ...|.|+|||++.++ +++||.+.+++.++..++....|++|.
T Consensus        65 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  139 (142)
T 2chd_A           65 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE  139 (142)
T ss_dssp             GGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred             cceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence            356899999999999999999998 5432   367999999999997 899999999999999888888899884

>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A

Probab=99.62  E-value=2.1e-16  Score=156.86  Aligned_cols=152  Identities=13%  Similarity=0.136  Sum_probs=109.5

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~  320 (628)
                      .+.++.|+++|++|++||+|+.|+|+.                 ..|.++|++||+|||+||||+ |..++...      
T Consensus        57 ~~~~~~ii~~I~~A~~sI~i~~Y~~~~-----------------~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~------  112 (220)
T 4gel_A           57 LRNVAKIVEQIDRAVYSIDLAIYTFTS-----------------LFLADSIKRALQRGVIIRIIS-DGEMVYSK------  112 (220)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEECSCBCC-----------------HHHHHHHHHHHHHTCEEEEEC-CTTTTTST------
T ss_pred             HHHHHHHHHHHHHhhhEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCeEEEEE-echhhhhh------
Confidence            568999999999999999999998732                 579999999999999999996 98765431      


Q ss_pred             CcccCChHHHHhhhccCCceEEeccCCCCCccchh--h--hccccccccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYF--K--QQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG  396 (628)
Q Consensus       321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~--~--~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~  396 (628)
                             ......+..+++.+...........+++  .  ....+.+.++|+|+++||+.        ++++||+|++..
T Consensus       113 -------~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N~t~~  177 (220)
T 4gel_A          113 -------GSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVNWTAL  177 (220)
T ss_dssp             -------TCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCCBSHH
T ss_pred             -------HHHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCcccccc
Confidence                   1223345556766653211111001110  0  00123456789999999998        999999998762


Q ss_pred             CCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhccc
Q 006854          397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKL  462 (628)
Q Consensus       397 r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~  462 (628)
                      ..                               ...|.|+.+...|++|.++++.|.+.|+.....
T Consensus       178 s~-------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~~~  212 (220)
T 4gel_A          178 GL-------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFAKT  212 (220)
T ss_dssp             HH-------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSEEC
T ss_pred             cc-------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhccCC
Confidence            11                               236889999999999999999999999876543

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.62  E-value=2e-15  Score=136.63  Aligned_cols=102  Identities=25%  Similarity=0.442  Sum_probs=84.3

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+    
T Consensus        16 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~   53 (129)
T 2bwq_A           16 VGHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSD   53 (129)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCC------------------------------------------BCEEEEEEEESSCSG
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCEEEEEEecCCCC
Confidence            35889999999999998876654                                          89999999832    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecC----CCceEEEEEEEcCCCC---CeeeEEEeccccccccCceeEEEEEc
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~d~~~---~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      ....+|++++++.||.|||+|.|.+.+    ....|.|+|||++.++   +++||.+.+++.++.... ..+||+|
T Consensus        54 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L  128 (129)
T 2bwq_A           54 KNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL  128 (129)
T ss_dssp             GGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             CcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence            456899999999999999999999533    2468999999999887   899999999999988654 7899998

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.62  E-value=3.2e-15  Score=140.05  Aligned_cols=109  Identities=22%  Similarity=0.391  Sum_probs=91.6

Q ss_pred             eeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC
Q 006854           11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ   90 (628)
Q Consensus        11 ~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~   90 (628)
                      ......+.|.|+|++|++|+.++ .+.                                          +||||++.+.+
T Consensus        21 ~y~~~~~~L~V~v~~a~~L~~~d-~g~------------------------------------------~Dpyv~v~l~~   57 (153)
T 3fbk_A           21 SIDAQDRVLLLHIIEGKGLISKQ-PGT------------------------------------------CDPYVKISLIP   57 (153)
T ss_dssp             EEEESSSEEEEEEEEEESCCCCS-SSC------------------------------------------CCEEEEEEEES
T ss_pred             EEECCCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCEEEEEEEEc
Confidence            35557889999999999999876 343                                          99999999843


Q ss_pred             ----eeeeeeccccCCCCCeEeeEEEEEec--CCCceEEEEEEEcCCCC--CeeeEEEecccccccc-CceeEEEEEccC
Q 006854           91 ----ATVARTRVLKNSQEPVWNEHFNIPLA--HPLSNLEIQVKDDDVFG--AQIIGTAAIPAHTIAT-GELISRWYDIIA  161 (628)
Q Consensus        91 ----~~~~kT~v~~~~~~P~wne~f~~~~~--~~~~~l~i~v~d~d~~~--~~~iG~~~i~l~~l~~-~~~~~~w~~L~~  161 (628)
                          ..+.+|++++++.||.|||+|.|.+.  .....|.|+|||++.++  +++||.+.+++.++.. +.....||+|..
T Consensus        58 ~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~  137 (153)
T 3fbk_A           58 EDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG  137 (153)
T ss_dssp             CSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred             CCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence                34579999999999999999999984  34466999999999874  8999999999999984 778899999954


Q ss_pred             C
Q 006854          162 P  162 (628)
Q Consensus       162 ~  162 (628)
                      .
T Consensus       138 ~  138 (153)
T 3fbk_A          138 E  138 (153)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.60  E-value=7.4e-15  Score=134.84  Aligned_cols=105  Identities=29%  Similarity=0.420  Sum_probs=88.9

Q ss_pred             eceEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--e
Q 006854           15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A   91 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~   91 (628)
                      ..+.|.|+|++|++|+.++.. +.                                          +||||++.+.+  .
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~~~~~~~   57 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMT------------------------------------------SDPYIKMTILPEKK   57 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTB------------------------------------------CEEEEEEEEETTTC
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCC------------------------------------------CCCEEEEEEecCCC
Confidence            678899999999999988764 43                                          99999999964  4


Q ss_pred             eeeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCce-eEEEEEccC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-ISRWYDIIA  161 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~-~~~w~~L~~  161 (628)
                      ...+|++++++.||+|||+|.|. +...   ...|.|+|||++.++ +++||.+.++|.++..+.. ...|++|..
T Consensus        58 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A           58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            56899999999999999999996 6653   357999999999997 8999999999999987543 456788843

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.60  E-value=4e-15  Score=137.01  Aligned_cols=82  Identities=21%  Similarity=0.344  Sum_probs=72.7

Q ss_pred             CCcEEEEEEC---CeeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCce
Q 006854           80 SDPYVTVVVP---QATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL  152 (628)
Q Consensus        80 ~dpyv~v~l~---~~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~  152 (628)
                      +||||++.+.   .....+|++++++.||+|||+|.|.+...   ...|.|+|||+|.++ +++||.+.++|.++..+..
T Consensus        44 sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~  123 (138)
T 1wfm_A           44 CDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLG  123 (138)
T ss_dssp             CCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTT
T ss_pred             cceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCccc
Confidence            9999999984   24457999999999999999999998764   467999999999998 9999999999999987778


Q ss_pred             eEEEEEccC
Q 006854          153 ISRWYDIIA  161 (628)
Q Consensus       153 ~~~w~~L~~  161 (628)
                      ...|++|..
T Consensus       124 ~~~W~~L~~  132 (138)
T 1wfm_A          124 AAQWGELKT  132 (138)
T ss_dssp             CCEEEECCC
T ss_pred             ccceeeCcC
Confidence            889999954

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.59  E-value=7.8e-15  Score=134.10  Aligned_cols=105  Identities=28%  Similarity=0.439  Sum_probs=86.3

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+    
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~   51 (138)
T 3n5a_A           14 SANSIIVNIIKARNLKAMDIGGT------------------------------------------SDPYVKVWLMYKDKR   51 (138)
T ss_dssp             TTTEEEEEEEEEESCCCCBTTTB------------------------------------------CCEEEEEEEEETTEE
T ss_pred             CCCeEEEEEEEeeCCCCcCCCCC------------------------------------------cCeEEEEEEEeCCCc
Confidence            56899999999999998876554                                          99999999864    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCCC---ceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS  163 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~~---~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  163 (628)
                      ....+|++++++.||.|||+|.|.+....   ..|.|+|||++.++ +++||.+.+++.++.  ....+|++|....
T Consensus        52 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~~~~  126 (138)
T 3n5a_A           52 VEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMIARP  126 (138)
T ss_dssp             EEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHHHST
T ss_pred             cceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHHhCC
Confidence            34679999999999999999999987654   57999999999997 999999999998643  2234555554443

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.59  E-value=3.3e-15  Score=137.25  Aligned_cols=104  Identities=24%  Similarity=0.400  Sum_probs=88.8

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~   91 (628)
                      .+.|.|+|++|++|+.++..+.                                          +||||++.+.+    .
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~   57 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK   57 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCC------------------------------------------CCEEEECCCSSCCSSS
T ss_pred             CCEEEEEEEEccCCCCcCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence            6789999999999998876664                                          99999999842    4


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEe-cCC---CceEEEEEEEcCCCC---CeeeEEEeccccccccCceeEEEEEccCC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPL-AHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAP  162 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~-~~~---~~~l~i~v~d~d~~~---~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  162 (628)
                      ...+|++++++.||+|||+|.|.+ ...   ...|.|+|||++.++   +++||.+.|+|.++.... ..+||+|...
T Consensus        58 ~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~  134 (141)
T 1v27_A           58 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH  134 (141)
T ss_dssp             SCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred             cceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence            567999999999999999999994 322   468999999999886   799999999999987654 7899999543

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.58  E-value=9.8e-15  Score=137.39  Aligned_cols=104  Identities=27%  Similarity=0.445  Sum_probs=88.6

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+    
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~   60 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR   60 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEE
T ss_pred             CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCce
Confidence            57899999999999998876654                                          99999999863    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecccccc------------ccCceeE
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI------------ATGELIS  154 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l------------~~~~~~~  154 (628)
                      ....+|++++++.||.|||+|.|.+...   ...|.|+|||++.++ +++||.+.|++..+            ..+....
T Consensus        61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~  140 (159)
T 1tjx_A           61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA  140 (159)
T ss_dssp             EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEE
T ss_pred             eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeee
Confidence            2467999999999999999999998764   357999999999997 99999999999853            2345678


Q ss_pred             EEEEcc
Q 006854          155 RWYDII  160 (628)
Q Consensus       155 ~w~~L~  160 (628)
                      +|++|.
T Consensus       141 ~W~~L~  146 (159)
T 1tjx_A          141 QWHTLQ  146 (159)
T ss_dssp             EEEECB
T ss_pred             eEEECc
Confidence            999994

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.58  E-value=1.3e-15  Score=142.34  Aligned_cols=104  Identities=27%  Similarity=0.394  Sum_probs=81.8

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC--Ce-
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA-   91 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~--~~-   91 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.  +. 
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~   65 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGL------------------------------------------SDPYVKVNLYHAKKR   65 (153)
T ss_dssp             TTTEEEEEEEEEESCC------C------------------------------------------CCEEEEEEEEETTEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCC------------------------------------------CCeEEEEEEEeCCeE
Confidence            57899999999999998876654                                          8999999984  33 


Q ss_pred             -eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCC
Q 006854           92 -TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP  162 (628)
Q Consensus        92 -~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  162 (628)
                       ...||++++++.||+|||+|.|.+...   ...|.|+|||++.++ +++||.+.|++.+  .+....+|++|...
T Consensus        66 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~  139 (153)
T 1w15_A           66 ISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICDF  139 (153)
T ss_dssp             EEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHS
T ss_pred             eceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHhC
Confidence             257999999999999999999998775   367999999999997 9999999999987  33444556666543

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=6.7e-15  Score=135.70  Aligned_cols=104  Identities=22%  Similarity=0.418  Sum_probs=88.4

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~   91 (628)
                      .+.|.|+|++|++|+.++..+                                           +||||++.+.+    .
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g-------------------------------------------~dpyv~v~l~~~~~~~   59 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDG-------------------------------------------SDPYVRMYLLPDKRRS   59 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTC-------------------------------------------CCEEEEEEEESCCCSS
T ss_pred             CCEEEEEEEEeECCCCCCCCC-------------------------------------------CCeeEEEEEEcCCCCC
Confidence            788999999999999765332                                           79999999853    2


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC---CeeeEEEeccccccccCceeEEEEEccCC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAP  162 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~---~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  162 (628)
                      ...+|++++++.||+|||+|.|.+...   ...|.|+|||++.++   +++||.+.|+|.++..+....+|++|...
T Consensus        60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~  136 (142)
T 2dmg_A           60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED  136 (142)
T ss_dssp             SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred             CcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence            467999999999999999999998653   358999999999875   36999999999999887788899999544

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.57  E-value=1.4e-14  Score=137.41  Aligned_cols=91  Identities=29%  Similarity=0.405  Sum_probs=80.6

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+    
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~   72 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGY------------------------------------------SDPFVKLWLKPDMGK   72 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETC---
T ss_pred             CCCEEEEEEEEeECCCCccCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence            46899999999999998876654                                          99999999975    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecccccc
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI  147 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l  147 (628)
                      ....+|++++++.||+|||+|.|.+...   ...|.|+|||++.++ +++||.+.|++.++
T Consensus        73 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A           73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             cceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence            3568999999999999999999998763   458999999999997 89999999999875

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=2.7e-15  Score=139.28  Aligned_cols=110  Identities=25%  Similarity=0.453  Sum_probs=89.9

Q ss_pred             eceEEEEEEEEeeCCCCC-CCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--e
Q 006854           15 LHGDLDLKIIRARRLPNM-DMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A   91 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~   91 (628)
                      ..+.|.|+|++|++|+.. +..+.                                    +.+.+.+||||++.+.+  .
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~------------------------------------~~~~~~~dpyv~v~l~~~~~   67 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGS------------------------------------RQDMAHSNPYVKICLLPDQK   67 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCS------------------------------------SCTTCCCCCEEEEEEETCCS
T ss_pred             CCCEEEEEEEEEeCCCCccccccc------------------------------------cccCCCCCcEEEEEEEeCCC
Confidence            467999999999999973 43331                                    00112399999999864  3


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEcc
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~  160 (628)
                      ...+|++++++.||+|||+|.|.+...   ...|.|+|||++.++ +++||.+.|+|.++..+.....|++|.
T Consensus        68 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~  140 (147)
T 2enp_A           68 NSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI  140 (147)
T ss_dssp             SCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred             cceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence            467999999999999999999998753   357999999999987 899999999999998777778899984

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.54  E-value=3.9e-14  Score=146.92  Aligned_cols=125  Identities=25%  Similarity=0.391  Sum_probs=101.1

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC--Cee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT   92 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~--~~~   92 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.  +..
T Consensus        18 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dPyv~v~l~~~~~~   55 (296)
T 1dqv_A           18 GSDQLVVRILQALDLPAKDSNGF------------------------------------------SDPYVKIYLLPDRKK   55 (296)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSC------------------------------------------CCEEEEEECTTSTTS
T ss_pred             CCCEEEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEcCCCe
Confidence            46899999999999998876665                                          9999999994  345


Q ss_pred             eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecc-ccccc-cCceeEEEEEccCCCCCC
Q 006854           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIP-AHTIA-TGELISRWYDIIAPSGSP  166 (628)
Q Consensus        93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~-l~~l~-~~~~~~~w~~L~~~~~~~  166 (628)
                      ..+|++++++.||.|||+|.|.+...   ...|.|+|||+|.++ +++||.+.++ +.++. .......|++|.... ..
T Consensus        56 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~-~~  134 (296)
T 1dqv_A           56 KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG-SE  134 (296)
T ss_dssp             CEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS-SC
T ss_pred             eEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeecccccc-cc
Confidence            67999999999999999999998654   347999999999997 9999999996 44444 234567899995433 23


Q ss_pred             CCCCceEEEEEEEeec
Q 006854          167 PKPGASIQLELKFTPC  182 (628)
Q Consensus       167 ~~~~g~i~l~l~y~p~  182 (628)
                      ....|+|.++++|.|.
T Consensus       135 ~~~~G~i~vsl~y~~~  150 (296)
T 1dqv_A          135 KADLGELNFSLCYLPT  150 (296)
T ss_dssp             CSCCCEEEEEEEEETT
T ss_pred             ccccceEEEEEEeccc
Confidence            3457999999999774

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.51  E-value=1e-13  Score=127.13  Aligned_cols=102  Identities=20%  Similarity=0.266  Sum_probs=90.3

Q ss_pred             CCcEEEEEECCeeeeeecccc-CCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeE
Q 006854           80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS  154 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~-~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~  154 (628)
                      +|||+++.+-+.+ .||++++ ++.||+|||.|.+++..+   .+.|.|.|+|++.+. +.+||++.++|.++..+....
T Consensus        37 ~Dp~akv~FRg~k-~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~  115 (144)
T 3l9b_A           37 ADRIAKVTFRGQS-FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVE  115 (144)
T ss_dssp             EEEEEEEEETTEE-EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEE
T ss_pred             CCCeEEEEEeccc-eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEE
Confidence            8999999997755 6999998 799999999999998875   567999999999988 999999999999999877777


Q ss_pred             EEEEccCCCCCCCCCCceEEEEEEEeecCC
Q 006854          155 RWYDIIAPSGSPPKPGASIQLELKFTPCDK  184 (628)
Q Consensus       155 ~w~~L~~~~~~~~~~~g~i~l~l~y~p~~~  184 (628)
                      -+-+|.+..+++.  .++|.|+|+|.|.+.
T Consensus       116 l~~~LvD~n~~~~--~a~I~l~l~Y~pp~g  143 (144)
T 3l9b_A          116 VSDTLIDDNNAII--KTSLSMEVRYQAADG  143 (144)
T ss_dssp             EEEEEECTTSCEE--EEEEEEEEEEEETTC
T ss_pred             EeecccCCCCCcc--ccEEEEEEEecCCCC
Confidence            8889988877753  489999999999653

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.51  E-value=1.2e-13  Score=126.24  Aligned_cols=96  Identities=20%  Similarity=0.359  Sum_probs=68.9

Q ss_pred             CCcEEEEEECCeeeeeecccc-CCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCc--eeEE
Q 006854           80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISR  155 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~-~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~--~~~~  155 (628)
                      +||||++. .. . .+|++++ ++.||.|||+|.|.+......|.|+|||+| ++ |++||++.|+|.++....  ....
T Consensus        23 ~DPYv~v~-~~-~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~~~   98 (131)
T 2cjt_A           23 FNTYVTLK-VQ-N-VKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGE   98 (131)
T ss_dssp             CEEEEEEE-ET-T-EEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCCCE
T ss_pred             cCeEEEEE-ec-C-EEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCccc
Confidence            89999999 22 2 3565555 699999999999999987788999999999 66 999999999999986432  1224


Q ss_pred             EEEccC----CCCC----CCCCCceEEEEEEE
Q 006854          156 WYDIIA----PSGS----PPKPGASIQLELKF  179 (628)
Q Consensus       156 w~~L~~----~~~~----~~~~~g~i~l~l~y  179 (628)
                      |.++.-    .+|+    -....+.+.+.++|
T Consensus        99 ~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~  130 (131)
T 2cjt_A           99 WLTLDSQAIMADSEICGTKDPTFHRILLDAHF  130 (131)
T ss_dssp             EEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             cEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence            555532    2222    12234458887776

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.46  E-value=3.8e-13  Score=149.49  Aligned_cols=117  Identities=21%  Similarity=0.358  Sum_probs=99.7

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~   94 (628)
                      ..|+|.|+|++|++|++++..+.                                          +||||++.+++.. .
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~------------------------------------------sdpyv~v~~~~~~-~  421 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGK------------------------------------------SNPYCEISMGSQS-Y  421 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTEE-E
T ss_pred             CCceEEEEeceeecCCCCCCCCC------------------------------------------CCeEEEEEECCee-c
Confidence            45789999999999998876665                                          9999999997754 7


Q ss_pred             eeccccCCCCCeEeeEEEEEecCCC-ceEEEEEEEcCCCC-CeeeEEEeccccccccCce----eEEEEEccCCCCCCCC
Q 006854           95 RTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL----ISRWYDIIAPSGSPPK  168 (628)
Q Consensus        95 kT~v~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~----~~~w~~L~~~~~~~~~  168 (628)
                      +|++++++.||.|||+|.|.+.... ..|.|+|||+|.++ +++||.+.+++.++..+..    ...|++|...      
T Consensus       422 ~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------  495 (510)
T 3jzy_A          422 TTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------  495 (510)
T ss_dssp             ECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------
T ss_pred             cCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC------
Confidence            9999999999999999999987654 67999999999998 9999999999999986544    7789999422      


Q ss_pred             CCceEEEEEEEe
Q 006854          169 PGASIQLELKFT  180 (628)
Q Consensus       169 ~~g~i~l~l~y~  180 (628)
                      ..|+|++++.+.
T Consensus       496 ~~G~i~l~~~l~  507 (510)
T 3jzy_A          496 PTGEVWVRFDLQ  507 (510)
T ss_dssp             SSCEEEEEEEEE
T ss_pred             CCceEEEEEEEE
Confidence            458998888754

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.43  E-value=7.2e-13  Score=126.28  Aligned_cols=66  Identities=23%  Similarity=0.404  Sum_probs=57.3

Q ss_pred             CCcEEEEEECCeeeeeecccc-CCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEecccccccc
Q 006854           80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT  149 (628)
Q Consensus        80 ~dpyv~v~l~~~~~~kT~v~~-~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~  149 (628)
                      +||||++. ..  ..||++++ ++.||.|||+|.|.+......|.|+|||+| ++ |++||++.|+|.++..
T Consensus        32 ~DPYV~v~-~~--~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           32 FNTYVTLK-VQ--NVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQ   99 (167)
T ss_dssp             CEEEEEEE-ET--TEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEEEEEEEEEGGGSCB
T ss_pred             CCeEEEEE-ec--ceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCceEEEEEEEHHHhcc
Confidence            89999999 22  24676665 599999999999999988788999999999 65 9999999999999864

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.40  E-value=1.7e-12  Score=144.91  Aligned_cols=106  Identities=21%  Similarity=0.326  Sum_probs=90.8

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeee
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR   95 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~k   95 (628)
                      .|.|.|+|++|++|+. |..+.                                          +||||+|.+++.. .|
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~------------------------------------------sDPYV~v~l~~~~-~k  428 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTA------------------------------------------TDAYLKVFFGGQE-FR  428 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSC------------------------------------------CCEEEEEEETTEE-EE
T ss_pred             ccEEEEEEEEccCCCc-ccCCC------------------------------------------cCeEEEEEECCEe-ee
Confidence            4789999999999997 76665                                          9999999998865 89


Q ss_pred             eccccCCCCCeEeeEEEEEec--CCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCce
Q 006854           96 TRVLKNSQEPVWNEHFNIPLA--HPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS  172 (628)
Q Consensus        96 T~v~~~~~~P~wne~f~~~~~--~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~  172 (628)
                      |++++++.||+|||+|.|.+.  .....|.|+|||+|.++ |++||.+.++|.   .| ....|++| .        .|+
T Consensus       429 Tkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l-~--------~G~  495 (540)
T 3nsj_A          429 TGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH---SG-FHEVTCEL-N--------HGR  495 (540)
T ss_dssp             CCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC---SE-EEEEEEEC-S--------SSE
T ss_pred             eeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee---CC-cEEEEEEc-C--------CeE
Confidence            999999999999999999853  35778999999999997 899999999987   34 36789987 2        288


Q ss_pred             EEEEEE
Q 006854          173 IQLELK  178 (628)
Q Consensus       173 i~l~l~  178 (628)
                      |++++.
T Consensus       496 l~~~~~  501 (540)
T 3nsj_A          496 VKFSYH  501 (540)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888876

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.38  E-value=2.2e-12  Score=146.72  Aligned_cols=120  Identities=25%  Similarity=0.471  Sum_probs=100.4

Q ss_pred             eceEEEEEEEEeeCCCCCCC--CchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--
Q 006854           15 LHGDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--   90 (628)
                      ..++|.|+|++|++|+.++.  .+                                          .+||||+|.+.+  
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~------------------------------------------~~DPYV~V~l~g~~  532 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNS------------------------------------------IVDPKVIVEIHGVG  532 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSS------------------------------------------CCCEEEEEEEESSG
T ss_pred             cceEEEEEEEEcCCCCcccccccC------------------------------------------CCCcEEEEEEecCC
Confidence            56899999999999997653  22                                          299999999844  


Q ss_pred             --eeeeeeccccCC-CCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854           91 --ATVARTRVLKNS-QEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (628)
Q Consensus        91 --~~~~kT~v~~~~-~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~  165 (628)
                        ..+.||++++++ .||+|||+|.|.+..+ ...|.|+|||+|.++ +++||++.+||..|..|.   +|++|.+..|.
T Consensus       533 ~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~  609 (624)
T 1djx_A          533 RDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGD  609 (624)
T ss_dssp             GGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSC
T ss_pred             CCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcC
Confidence              345799999997 9999999999998876 367999999999997 999999999999998763   69999877766


Q ss_pred             CCCCCceEEEEEEEe
Q 006854          166 PPKPGASIQLELKFT  180 (628)
Q Consensus       166 ~~~~~g~i~l~l~y~  180 (628)
                      +. ..+.|.++++|.
T Consensus       610 ~~-~~~~L~v~i~~~  623 (624)
T 1djx_A          610 QH-PSATLFVKISIQ  623 (624)
T ss_dssp             EE-EEEEEEEEEEEE
T ss_pred             CC-CceEEEEEEEEE
Confidence            43 357888888875

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.38  E-value=3.8e-14  Score=156.98  Aligned_cols=125  Identities=25%  Similarity=0.437  Sum_probs=23.8

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~   94 (628)
                      ..+.|.|+|++|++|+++                                               .||||++.+++....
T Consensus         9 ~~~~L~V~VieAk~L~~~-----------------------------------------------ddpYv~v~l~~~~~~   41 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPK-----------------------------------------------KRYYCELCLDDMLYA   41 (483)
T ss_dssp             EEECC---------------------------------------------------------------------------
T ss_pred             eccEEEEEEEEcCCcCCC-----------------------------------------------CCCeEEEEECCeEEe
Confidence            357899999999999853                                               379999999887667


Q ss_pred             eeccccCC---CCCeEeeEEEEEecCCCceEEEEEEEc-CC---CC-CeeeEEEeccccccccCceeEEEEEccCCCC--
Q 006854           95 RTRVLKNS---QEPVWNEHFNIPLAHPLSNLEIQVKDD-DV---FG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG--  164 (628)
Q Consensus        95 kT~v~~~~---~~P~wne~f~~~~~~~~~~l~i~v~d~-d~---~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~--  164 (628)
                      ||++++++   .||+|||+|.|.+.+....|.|+|||. |.   ++ +++||.+.|++.++..+...++||+|..+.+  
T Consensus        42 kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~  121 (483)
T 3bxj_A           42 RTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSG  121 (483)
T ss_dssp             -----------------CCEECC------------------------------------------CCEECC---------
T ss_pred             eeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCcc
Confidence            99999999   999999999999766567899999994 42   44 8999999999999998888899999965442  


Q ss_pred             -------------------CCCCCCceEEEEEEEeecCCCC
Q 006854          165 -------------------SPPKPGASIQLELKFTPCDKNP  186 (628)
Q Consensus       165 -------------------~~~~~~g~i~l~l~y~p~~~~~  186 (628)
                                         +..+..|+|+|+++|.+....|
T Consensus       122 ~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~vlP  162 (483)
T 3bxj_A          122 GSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILP  162 (483)
T ss_dssp             -----------------------------CEEEEEECCBCC
T ss_pred             ccccccccccccccccccccCCCCCceEEEEEEeeeeeecc
Confidence                               1223569999999999864333

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.37  E-value=2.4e-12  Score=132.16  Aligned_cols=104  Identities=27%  Similarity=0.447  Sum_probs=87.4

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+    
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~  185 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR  185 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEE
T ss_pred             cCCceEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEeCCcE
Confidence            36789999999999998876664                                          99999999843    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccc------------cCceeE
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA------------TGELIS  154 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~------------~~~~~~  154 (628)
                      ..+.+|++++++.||.|||+|.|.+...   ...|.|+|||++.++ +++||.+.+++..+.            .+....
T Consensus       186 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~  265 (284)
T 2r83_A          186 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA  265 (284)
T ss_dssp             EEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEE
T ss_pred             eeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchh
Confidence            2457999999999999999999998765   346999999999998 999999999997632            345677


Q ss_pred             EEEEcc
Q 006854          155 RWYDII  160 (628)
Q Consensus       155 ~w~~L~  160 (628)
                      +|++|.
T Consensus       266 ~W~~L~  271 (284)
T 2r83_A          266 QWHTLQ  271 (284)
T ss_dssp             EEEECB
T ss_pred             eeeecC
Confidence            899984

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.33  E-value=3e-12  Score=147.29  Aligned_cols=103  Identities=27%  Similarity=0.467  Sum_probs=91.7

Q ss_pred             eceEEEEEEEEeeCCCC---CCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-
Q 006854           15 LHGDLDLKIIRARRLPN---MDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-   90 (628)
                      ..+.|.|+|++|++|+.   +|..+.                                          +||||+|.+.+ 
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~------------------------------------------sDPYV~V~l~~~   53 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDT------------------------------------------PDPYVELFISTT   53 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCC------------------------------------------CCEEEEEECTTS
T ss_pred             CccEEEEEEEEEECCCCccccCCCCC------------------------------------------cCeEEEEEEecC
Confidence            46799999999999997   554443                                          99999999985 


Q ss_pred             -eeeeeeccccCCCCCeEeeEEEEEecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEc
Q 006854           91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        91 -~~~~kT~v~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                       ..+.||++++++.||+|||+|.|.+... ...|.|+|||+|.+++++||++.|+|.++..+.....|++|
T Consensus        54 ~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L  124 (749)
T 1cjy_A           54 PDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF  124 (749)
T ss_dssp             TTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEE
T ss_pred             CCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEec
Confidence             3567999999999999999999999874 56799999999998899999999999999988888999999

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.27  E-value=1.7e-12  Score=134.61  Aligned_cols=108  Identities=29%  Similarity=0.456  Sum_probs=88.0

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~   91 (628)
                      .|.|.|+|++|++|+.++..+.                                          +||||++.+.+    .
T Consensus       151 ~~~l~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~~  188 (296)
T 1dqv_A          151 AGLLTVTIIKASNLKAMDLTGF------------------------------------------SDPYVKASLISEGRRL  188 (296)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEECCCTTCCTT
T ss_pred             cceeEEEEEEeecCCccCCCCC------------------------------------------CCcEEEEEEEeCCcCc
Confidence            5899999999999998876665                                          89999999863    3


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  166 (628)
                      .+.||++++++.||.|||.|.|.+...   ...|.|+|||++.++ +++||.+.|++..+.. ....+|+.|+...+++
T Consensus       189 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~~~~~  266 (296)
T 1dqv_A          189 KKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLANPRKP  266 (296)
T ss_dssp             SCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSSSSSC
T ss_pred             cceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhCCCCc
Confidence            457999999999999999999998765   346999999999998 9999999999987643 1335666665544443

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.12  E-value=1.9e-10  Score=132.32  Aligned_cols=109  Identities=22%  Similarity=0.401  Sum_probs=93.7

Q ss_pred             eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC-
Q 006854           12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-   90 (628)
Q Consensus        12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-   90 (628)
                      ..+..+.|.|+|++|++|++++..+.                                          +||||++.+.+ 
T Consensus       167 ~~~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDPyvkv~l~p~  204 (674)
T 3pfq_A          167 AHIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPD  204 (674)
T ss_dssp             EEECSSEEEEEEEEEESCCCCSTTSS------------------------------------------CCEEEEEEEESC
T ss_pred             ceeccceeeeeeecccccCCCCcccc------------------------------------------cCcccccccccC
Confidence            45668899999999999999887765                                          99999999832 


Q ss_pred             ---eeeeeeccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCC
Q 006854           91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS  163 (628)
Q Consensus        91 ---~~~~kT~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  163 (628)
                         ..+.+|++++++.||.|||+|.|.+...  ...|.|+|||+|.++ +++||.+.+++.++.... ..+|+.|....
T Consensus       205 ~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~  282 (674)
T 3pfq_A          205 PKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE  282 (674)
T ss_dssp             SSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCTT
T ss_pred             ccccccccccccccccCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeecccc
Confidence               3457999999999999999999998754  456999999999998 999999999999998654 58999997543

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.93  E-value=2.8e-09  Score=124.59  Aligned_cols=95  Identities=23%  Similarity=0.406  Sum_probs=76.5

Q ss_pred             CCcEEEEEECC-----eeeeeeccccC-CCCCeEee-EEEEE-ecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccC
Q 006854           80 SDPYVTVVVPQ-----ATVARTRVLKN-SQEPVWNE-HFNIP-LAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG  150 (628)
Q Consensus        80 ~dpyv~v~l~~-----~~~~kT~v~~~-~~~P~wne-~f~~~-~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~  150 (628)
                      +||||+|.+.+     ..+.||+++++ +.||+||| +|.|. +..+ ...|.|+|||+|   +++||++.+||..|..|
T Consensus       742 ~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~G  818 (885)
T 3ohm_B          742 VGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSG  818 (885)
T ss_dssp             CCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCE
T ss_pred             CCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCC
Confidence            89999999854     23469999986 59999999 69998 6544 467999999987   89999999999999877


Q ss_pred             ceeEEEEEccCCCCCCCCCCceEEEEEEEee
Q 006854          151 ELISRWYDIIAPSGSPPKPGASIQLELKFTP  181 (628)
Q Consensus       151 ~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p  181 (628)
                      .   ++++|.+..|.+. ..+.|.+.+.+..
T Consensus       819 y---R~vpL~~~~g~~l-~~atLfv~i~~~~  845 (885)
T 3ohm_B          819 Y---HYVCLRNEANQPL-CLPALLIYTEASD  845 (885)
T ss_dssp             E---EEEEEECTTSCEE-EEEEEEEEEEEEE
T ss_pred             c---eEEEecCCCCCcc-CceEEEEEEEEEe
Confidence            3   5789977766532 3478888888775

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.93  E-value=3.6e-09  Score=123.37  Aligned_cols=113  Identities=22%  Similarity=0.387  Sum_probs=89.4

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..++|.|+|++|++|+..    .                                          +||||+|.+.+    
T Consensus       676 ~~~~L~V~Visa~~L~~~----~------------------------------------------~DPYV~V~l~g~p~d  709 (799)
T 2zkm_X          676 VATTLSITVISGQFLSER----S------------------------------------------VRTYVEVELFGLPGD  709 (799)
T ss_dssp             TCEEEEEEEEEEESCCSS----C------------------------------------------CCEEEEEEEECCTTS
T ss_pred             eeeeEEEEEEeccccCcc----C------------------------------------------CCcEEEEEEEecCCC
Confidence            467899999999999841    1                                          89999999843    


Q ss_pred             -eeeeeec-cccC-CCCCeEee-EEEE-EecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCC
Q 006854           91 -ATVARTR-VLKN-SQEPVWNE-HFNI-PLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG  164 (628)
Q Consensus        91 -~~~~kT~-v~~~-~~~P~wne-~f~~-~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  164 (628)
                       ..+.||+ ++++ +.||+||| +|.| .+..+ ...|.|.|||++   +++||.+.|||..|..|   -+|++|.+..|
T Consensus       710 ~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G---~r~v~L~~~~g  783 (799)
T 2zkm_X          710 PKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSG---YHHLCLHSESN  783 (799)
T ss_dssp             CCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCE---EEEEEEECTTC
T ss_pred             cccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCC---cEEEeccCCCC
Confidence             2357999 7765 69999999 6999 77654 457899999987   89999999999999876   46899977666


Q ss_pred             CCCCCCceEEEEEEEe
Q 006854          165 SPPKPGASIQLELKFT  180 (628)
Q Consensus       165 ~~~~~~g~i~l~l~y~  180 (628)
                      .+. ..+.|.+++.+.
T Consensus       784 ~~~-~~~~Lfv~i~~~  798 (799)
T 2zkm_X          784 MPL-TMPALFIFLEMK  798 (799)
T ss_dssp             CEE-EEEEEEEEEEEE
T ss_pred             CCC-CceEEEEEEEEE
Confidence            533 247777877764

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.92  E-value=4.7e-09  Score=122.02  Aligned_cols=113  Identities=25%  Similarity=0.420  Sum_probs=90.9

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~   91 (628)
                      .++|.|+|++|++|+..    .                                          +||||+|.+.+    .
T Consensus       649 ~~~L~V~Visaq~L~~~----~------------------------------------------~DPYV~V~l~g~p~d~  682 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----Q------------------------------------------ISSYVEVEMYGLPTDT  682 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----C------------------------------------------CCEEEEEEEESSGGGC
T ss_pred             ceEEEEEEEEcccCCCC----C------------------------------------------CCCeEEEEEeCCCccc
Confidence            57899999999999842    1                                          89999999854    1


Q ss_pred             --eeeeeccccC-CCCCeEeeE-EEEE-ecCC-CceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCC
Q 006854           92 --TVARTRVLKN-SQEPVWNEH-FNIP-LAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (628)
Q Consensus        92 --~~~kT~v~~~-~~~P~wne~-f~~~-~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~  165 (628)
                        .+.||+++++ +.||+|||+ |.|. +..+ ...|.|+|||++   +++||++.+||..|..|.   ++++|.+..|.
T Consensus       683 ~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~  756 (816)
T 3qr0_A          683 VRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPGY---RHVPLRNESNR  756 (816)
T ss_dssp             EEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCEE---EEEEEECTTSC
T ss_pred             ccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCCC
Confidence              4579999986 699999998 9998 6554 467899999985   799999999999999873   57999877766


Q ss_pred             CCCCCceEEEEEEEee
Q 006854          166 PPKPGASIQLELKFTP  181 (628)
Q Consensus       166 ~~~~~g~i~l~l~y~p  181 (628)
                      +. ..+.|.+.+.+..
T Consensus       757 ~~-~~atLfv~i~~~~  771 (816)
T 3qr0_A          757 PL-GLASVFAHIVAKD  771 (816)
T ss_dssp             EE-EEEEEEEEEEEEE
T ss_pred             CC-CceEEEEEEEEEe
Confidence            43 2367888887665

>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}

Probab=98.87  E-value=3.1e-09  Score=116.64  Aligned_cols=150  Identities=18%  Similarity=0.036  Sum_probs=99.4

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCC
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~  320 (628)
                      ..+...++++|.+|+++|+|++-      ||.  +.        ..+.++|+.|++|||+|+||+ +...+...+.....
T Consensus       257 ~~i~~~~~~lI~~A~~~I~I~tp------Yf~--p~--------~~~~~aL~~Aa~rGV~VrIi~-~~~~and~y~~~~~  319 (458)
T 3hsi_A          257 NELNQVIEDLFLQVQKKLVICTP------YFN--FP--------RTLQHKIATLLENGKRVEIIV-GDKVANDFYIPPEQ  319 (458)
T ss_dssp             CHHHHHHHHHHHTCSSEEEEECS------SSC--CC--------HHHHHHHHHHHTTTCEEEEEE-ECGGGSTTCCCTTS
T ss_pred             hHHHHHHHHHHHhcccEEEEEEe------ccC--CC--------HHHHHHHHHHHHCCCeEEEEE-CCccccCCccCCcc
Confidence            57888999999999999999843      333  11        579999999999999999997 77632211000000


Q ss_pred             CcccCCh-HHHH-----------hhhccCC-ceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEE
Q 006854          321 GVMATHD-EETK-----------KFFKHSS-VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF  387 (628)
Q Consensus       321 ~~~~~~~-~~~~-----------~~l~~~g-v~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vaf  387 (628)
                      .++.... ..+.           +.+..+| +.+... .+.              .+..|.|.+|||++        +++
T Consensus       320 ~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V~i~-~~~--------------~~~lHaK~~vvD~~--------~~~  376 (458)
T 3hsi_A          320 PFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLW-RDG--------------DNTYHLKGVWVDDR--------YIL  376 (458)
T ss_dssp             CCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEEEEE-CBT--------------TBEECCCEEEETTT--------EEE
T ss_pred             hhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEEEEE-ecC--------------CCceeEEEEEECCe--------EEE
Confidence            0100000 1111           2344566 333321 111              13459999999998        999


Q ss_pred             EccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH---HHHHHHHHHHHHHhhhccc
Q 006854          388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP---AAYDVLINFEQRWRKATKL  462 (628)
Q Consensus       388 vGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp---av~~l~~~F~~rW~~~~~~  462 (628)
                      +|+.|+...-+.                                -=..+.+.|.+|   .+.++.+.|.+.|..+...
T Consensus       377 vGS~N~d~RS~~--------------------------------lN~E~~~~i~~~~~~l~~~l~~~f~~~~~~s~~v  422 (458)
T 3hsi_A          377 LTGNNLNPRAWR--------------------------------LDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKVL  422 (458)
T ss_dssp             EECCCCSHHHHH--------------------------------TCEEEEEEEECTTCSSHHHHHHHHHHHHTTEEEC
T ss_pred             ecCCCCCcchhh--------------------------------hCceeEEEEeCCcHHHHHHHHHHHHHHHHhCeEc
Confidence            999999873221                                014788899998   7999999999999876543

>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*

Probab=98.81  E-value=4.7e-08  Score=108.73  Aligned_cols=159  Identities=18%  Similarity=0.181  Sum_probs=93.6

Q ss_pred             chHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCC
Q 006854          242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG  321 (628)
Q Consensus       242 ~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~  321 (628)
                      .....++++|.+|+++|+|++--|.|  |+.  +.. . .  ...+.++|+.|++|||+|+||+ +..............
T Consensus       314 ~~~~~~~~~I~~A~~~I~I~tq~~~p--yf~--p~~-~-~--~~~i~~aL~~Aa~rGV~VrIl~-~~~~~~~~~~~a~~~  384 (506)
T 1v0w_A          314 PEESALRALVASAKGHIEISQQDLNA--TCP--PLP-R-Y--DIRLYDALAAKMAAGVKVRIVV-SDPANRGAVGSGGYS  384 (506)
T ss_dssp             HHHHHHHHHHHTCSSEEEEEESCSSC--CTT--TSC-S-C--CHHHHHHHHHHHHTTCEEEEEE-CCGGGCC------CC
T ss_pred             cHHHHHHHHHhCcCcEEEEEeccccc--ccc--Ccc-c-c--hHHHHHHHHHHHhCCCcEEEEe-CCCCchHHHHHhHHH
Confidence            57889999999999999999632222  222  110 0 0  1589999999999999999997 655322111111111


Q ss_pred             cccCChHH-----HHhhhccCC-----------ceEEeccC---CCCCccchhhhccccccccCcceEEEEecCCCCCCc
Q 006854          322 VMATHDEE-----TKKFFKHSS-----------VNCVLAPR---YASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNR  382 (628)
Q Consensus       322 ~~~~~~~~-----~~~~l~~~g-----------v~~~~~~~---~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~  382 (628)
                      ......+.     ....+..+|           +++.....   +..         ..+.....|.|++|||++      
T Consensus       385 ~~~~L~~~~~~l~~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~~~~---------~~~~~~~lHaK~~vvD~~------  449 (506)
T 1v0w_A          385 QIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKW---------ADGHPYAQHHKLVSVDSS------  449 (506)
T ss_dssp             CCSCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSSSSC---------TTSCCCCBCCEEEEETTT------
T ss_pred             HHHHHHHhhhhhcccchhcccccchhccccccceeeeeccccCcccc---------ccCccccceEEEEEECCc------
Confidence            11000000     000011112           23310000   000         001123579999999998      


Q ss_pred             ceEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHH-Hhhhc
Q 006854          383 KITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQR-WRKAT  460 (628)
Q Consensus       383 ~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~r-W~~~~  460 (628)
                        ++++|+.|+.. |                                  .++++.+.|++| .+.++...|.++ |+.+.
T Consensus       450 --~~~vGS~N~d~-r----------------------------------S~~E~~l~i~~~~~a~~l~~~f~~~~w~~s~  492 (506)
T 1v0w_A          450 --TFYIGSKNLYP-S----------------------------------WLQDFGYIVESPEAAKQLDAKLLDPQWKYSQ  492 (506)
T ss_dssp             --EEEEESCCSSC-C----------------------------------CSBCEEEEEECHHHHHHHHHHTHHHHHHHHG
T ss_pred             --EEEEeCCCCCC-c----------------------------------chhhceeEecCHHHHHHHHHHHHHHHHhhcc
Confidence              99999999965 2                                  124889999997 788999999975 77554


Q ss_pred             c
Q 006854          461 K  461 (628)
Q Consensus       461 ~  461 (628)
                      .
T Consensus       493 ~  493 (506)
T 1v0w_A          493 E  493 (506)
T ss_dssp             G
T ss_pred             c
Confidence            3

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.77  E-value=1.1e-07  Score=84.71  Aligned_cols=89  Identities=16%  Similarity=0.345  Sum_probs=74.0

Q ss_pred             CCcEEEEEECCeee---eee-ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccc-----cC
Q 006854           80 SDPYVTVVVPQATV---ART-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG  150 (628)
Q Consensus        80 ~dpyv~v~l~~~~~---~kT-~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~-----~~  150 (628)
                      .||||.|.+.....   .+| ..+++|..|+|||+|.-.+.. ...|.|.|++...   ++++.+.|++.+|.     .+
T Consensus        27 lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~  102 (126)
T 1yrk_A           27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNN  102 (126)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTT
T ss_pred             CCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence            89999999976443   376 667779999999999999875 7789999997665   99999999999998     34


Q ss_pred             ceeEEEEEccCCCCCCCCCCceEEEEEEEe
Q 006854          151 ELISRWYDIIAPSGSPPKPGASIQLELKFT  180 (628)
Q Consensus       151 ~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~  180 (628)
                      ...+-|++| .       +.|+|++.+.|.
T Consensus       103 g~~e~WvdL-e-------P~Gkl~~~i~~~  124 (126)
T 1yrk_A          103 GKAEFWLDL-Q-------PQAKVLMSVQYF  124 (126)
T ss_dssp             TEEEEEEEC-B-------SSCEEEEEEEEE
T ss_pred             CceEEEEec-c-------cCcEEEEEEEEe
Confidence            566889999 3       359999999975

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.69  E-value=9.2e-08  Score=86.40  Aligned_cols=90  Identities=18%  Similarity=0.396  Sum_probs=74.9

Q ss_pred             CCcEEEEEECCeee---eee-ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccc-----cC
Q 006854           80 SDPYVTVVVPQATV---ART-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG  150 (628)
Q Consensus        80 ~dpyv~v~l~~~~~---~kT-~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~-----~~  150 (628)
                      .||||.|.+.....   .+| ..+++|..|+|||+|.-.+.. ...|.|.|++...   ++++.+.|++.+|.     .+
T Consensus        32 lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~  107 (138)
T 2enj_A           32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKNV---DLISETTVELYSLAERCRKNN  107 (138)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTT
T ss_pred             CCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence            89999999977443   788 667779999999999998875 6789999996554   89999999999998     34


Q ss_pred             ceeEEEEEccCCCCCCCCCCceEEEEEEEee
Q 006854          151 ELISRWYDIIAPSGSPPKPGASIQLELKFTP  181 (628)
Q Consensus       151 ~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p  181 (628)
                      ...+-|++| .       +.|+|++.+.|.-
T Consensus       108 g~~e~WvdL-e-------P~Gkl~v~i~~~~  130 (138)
T 2enj_A          108 GKTEIWLEL-K-------PQGRMLMNARYFL  130 (138)
T ss_dssp             TCEEEEEEC-B-------SSCEEEEEEEECC
T ss_pred             CceEEEEec-c-------cCcEEEEEEEEEE
Confidence            566889999 3       3599999999864

>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4

Probab=97.39  E-value=0.00026  Score=80.74  Aligned_cols=138  Identities=15%  Similarity=0.167  Sum_probs=96.5

Q ss_pred             CCCccCCcchHHHHHHHHHhccc----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCC
Q 006854          234 GGKLYKPGTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK  309 (628)
Q Consensus       234 ~g~~y~~~~~f~~l~~aI~~Ak~----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~  309 (628)
                      .||...+..+...+..+|.+|++    +|+|.+    |.  |.  |         ..+.++|..|+++||+|+||+ .+.
T Consensus       511 ~sP~~~~~~i~~~i~~eI~~Ak~G~~a~I~ik~----n~--l~--D---------~~ii~aL~~As~~GV~V~LIV-RGi  572 (705)
T 2o8r_A          511 VARYNMGEAITNLIEREIENVKRGKRGYMLLKM----NG--LQ--D---------KNVITQLYRASEAGVEIDLIV-RGI  572 (705)
T ss_dssp             ETTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEE----SC--BC--C---------HHHHHHHHHHHHTTCEEEEEE-SSC
T ss_pred             ECCchHHHHHHHHHHHHHHHHhcCCCCEEEEEc----CC--CC--C---------HHHHHHHHHHHHCCCeEEEEE-ccc
Confidence            38888888899999999999998    999873    31  11  1         589999999999999999998 555


Q ss_pred             CccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEE---ecCCCCCCcceEE
Q 006854          310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLV---DTQASGNNRKITA  386 (628)
Q Consensus       310 gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVV---Dg~~~~~~~~~va  386 (628)
                      -+.. +     |.         .  ...++.|.   .+-+.   ++          .|-|+.+.   |+.        .+
T Consensus       573 C~L~-P-----gv---------~--~sdni~V~---Sivgr---~L----------eh~RIy~f~~gd~~--------~~  611 (705)
T 2o8r_A          573 CCLV-P-----DM---------P--QSRNIRVT---RLVDM---YL----------EHSRIWCFHNGGKE--------EV  611 (705)
T ss_dssp             BCSC-C-----SS---------G--GGTTEEEE---ECCSS---SE----------ECCCEEEECGGGSC--------EE
T ss_pred             cccC-C-----CC---------C--CCCCeEEE---eeHHH---HH----------hcCEEEEEECCCCc--------EE
Confidence            3221 1     10         0  12345554   11111   11          26699998   554        99


Q ss_pred             EEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhccc
Q 006854          387 FIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKL  462 (628)
Q Consensus       387 fvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~~  462 (628)
                      |+|+.|+....++-                                -..+.+.|..| .+++|...|...|....+.
T Consensus       612 ~IGSAn~m~Rnl~~--------------------------------r~Ev~~~i~d~~~~~~l~~i~~~~l~d~~~a  656 (705)
T 2o8r_A          612 FISSADWMKRNLYN--------------------------------RIETACPVLDPTLRREIIDILEIQLRDNIKA  656 (705)
T ss_dssp             EEESCCBCHHHHHT--------------------------------SBCEEEECCSHHHHHHHHHHHHHHHHCCSSC
T ss_pred             EEeccccchhhhhh--------------------------------eeEEEEEEcCHHHHHHHHHHHHHhhhhhhce
Confidence            99999988832221                                13788888887 7788999999999876553

>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A

Probab=97.23  E-value=0.00046  Score=63.45  Aligned_cols=48  Identities=15%  Similarity=0.138  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       560 ~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                      .++.+.++.+|.+|+++|+|+++|| ++                 ..|.++|.+|.++|.++||++
T Consensus        13 ~~~~~~~~~~i~~A~~~I~i~~~~~-~~-----------------~~i~~aL~~a~~rGV~Vril~   60 (155)
T 1byr_A           13 GSARVLVLSAIDSAKTSIRMMAYSF-TA-----------------PDIMKALVAAKKRGVDVKIVI   60 (155)
T ss_dssp             THHHHHHHHHHHHCSSEEEEEESSB-CC-----------------HHHHHHHHHHHHTTCEEEEEE
T ss_pred             CcHHHHHHHHHHHHhhEEEEEEEEe-CC-----------------HHHHHHHHHHHHCCCEEEEEE
Confidence            4689999999999999999999999 32                 269999999999999999876

>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A

Probab=97.05  E-value=0.00062  Score=65.88  Aligned_cols=47  Identities=15%  Similarity=0.142  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       561 ~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                      +....++++|.+|+++|+|+. |++++.                 +|+++|++|+++|+++||++
T Consensus        46 ~~~~~ll~~I~~A~~sI~i~~-y~~~~~-----------------~i~~aL~~aa~rGV~Vrii~   92 (196)
T 4ggj_A           46 SSLSRLLRALLAARSSLELCL-FAFSSP-----------------QLGRAVQLLHQRGVRVRVIT   92 (196)
T ss_dssp             CHHHHHHHHHHTCSSEEEEEE-SCBCCH-----------------HHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHhheEEEEEE-EEeCCH-----------------HHHHHHHHHHHcCCcEEEEE
Confidence            456889999999999999998 555543                 69999999999999999986

>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A

Probab=96.97  E-value=0.00082  Score=65.74  Aligned_cols=48  Identities=17%  Similarity=0.062  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       560 ~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                      ....+.++.+|.+|+++|+|+. |++++.                 +|+++|++|+++|+++||++
T Consensus        57 ~~~~~~ii~~I~~A~~sI~i~~-Y~~~~~-----------------~I~~aL~~Aa~RGV~VRii~  104 (220)
T 4gel_A           57 LRNVAKIVEQIDRAVYSIDLAI-YTFTSL-----------------FLADSIKRALQRGVIIRIIS  104 (220)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEC-SCBCCH-----------------HHHHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHHHHHHHHhhhEEEEEE-EEeCCH-----------------HHHHHHHHHHHcCCeEEEEE
Confidence            4566788999999999999997 666654                 79999999999999999985

>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*

Probab=96.93  E-value=0.001  Score=76.02  Aligned_cols=132  Identities=18%  Similarity=0.204  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhccc----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccC
Q 006854          244 WEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKT  319 (628)
Q Consensus       244 f~~l~~aI~~Ak~----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~  319 (628)
                      ...+.+.|..|++    +|+|.+..+ |       +         ..+.++|.+||++||+|+||+ ++.-+. .++.  
T Consensus       514 ~~~I~~ei~~A~~g~~~~I~i~~~~l-p-------D---------~~ii~AL~~Aa~rGV~VrLiv-rg~c~l-~pgv--  572 (687)
T 1xdp_A          514 YEMVDREIANAQQGLPSGITLKLNNL-V-------D---------KGLVDRLYAASSSGVPVNLLV-RGMCSL-IPNL--  572 (687)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEEESCB-C-------C---------HHHHHHHHHHHHTTCCEEEEE-SSCBCB-CTTC--
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEeCCC-C-------C---------HHHHHHHHHHHHCCCEEEEEE-eccccc-CCCC--
Confidence            3445556777886    798875522 1       1         589999999999999999998 654221 1110  


Q ss_pred             CCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCC
Q 006854          320 PGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD  399 (628)
Q Consensus       320 ~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d  399 (628)
                      +|             ...++.+.   .+-+.   +         . .|-|+......     +...+|+|+.|+....++
T Consensus       573 p~-------------~sdni~V~---s~~~r---~---------L-eh~rI~~f~~~-----dd~~~~IGSAN~d~Rsl~  618 (687)
T 1xdp_A          573 EG-------------ISDNIRAI---SIVDR---Y---------L-EHDRVYIFENG-----GDKKVYLSSADWMTRNID  618 (687)
T ss_dssp             TT-------------TSTTEEEE---EECSS---S---------E-ECCCEEEECGG-----GSCEEEEESCCBSHHHHH
T ss_pred             CC-------------CCCCEEEE---EehhH---H---------h-hCCeEEEEcCC-----CCCEEEEEcCccchhhhh
Confidence            00             01234443   11111   1         1 25689988431     112999999999873222


Q ss_pred             CCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHHHHhhhccc
Q 006854          400 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKL  462 (628)
Q Consensus       400 ~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~rW~~~~~~  462 (628)
                      .                                =..+.+.|..| .+++|...|...|....+.
T Consensus       619 ~--------------------------------n~Ev~~~I~d~~~~~~l~~~f~~~l~d~~~a  650 (687)
T 1xdp_A          619 Y--------------------------------RIEVATPLLDPRLKQRVLDIIDILFSDTVKA  650 (687)
T ss_dssp             S--------------------------------EEEEEEECCSHHHHHHHHHHHHHHHTCCSSE
T ss_pred             h--------------------------------heeeeEEecCHHHHHHHHHHHHHhhcccccc
Confidence            1                                14678888885 7788999999999876443

>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}

Probab=94.57  E-value=0.02  Score=60.16  Aligned_cols=48  Identities=25%  Similarity=0.185  Sum_probs=40.1

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEE
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV  305 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILv  305 (628)
                      +.+...+.+.|.+|+++|++..|.  +  . .            ..+.+.|.++++|||+|++|+
T Consensus       118 ~~I~~ri~eli~~A~~eI~i~~~~--~--~-l------------~~l~~~L~~a~~RGV~Vrvi~  165 (342)
T 3qph_A          118 DEAIEMFRESLYSAKNEVIVVTPS--E--F-F------------ETIREDLIKTLERGVTVSLYI  165 (342)
T ss_dssp             HHHHHHHHHHHHHCSSEEEEEECH--H--H-H------------HHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHhhheEEEEEeCH--H--H-H------------HHHHHHHHHHHhCCCEEEEEE
Confidence            568999999999999999998651  1  1 1            468899999999999999996

>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5

Probab=93.15  E-value=0.081  Score=52.45  Aligned_cols=50  Identities=24%  Similarity=0.125  Sum_probs=42.1

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEec
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD  307 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD  307 (628)
                      +.....+.+.|++|+++|++..|.          +.       -..|.+.|.+|++|||.|+|+++.
T Consensus         9 e~Ii~r~~e~I~~A~~el~lsi~~----------e~-------l~~l~~~L~~A~~rGV~V~liv~~   58 (233)
T 2f5t_X            9 DEAIEMFRESLYSAKNEVIVVTPS----------EF-------FETIREDLIKTLERGVTVSLYIDK   58 (233)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEECG----------GG-------HHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             HHHHHHHHHHHHHhhhEEEEEeCH----------HH-------HHHHHHHHHHHHHCCCEEEEEEcC
Confidence            568899999999999999997661          11       157999999999999999999954

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=83.87  E-value=9.8  Score=36.98  Aligned_cols=41  Identities=12%  Similarity=0.297  Sum_probs=34.2

Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDV  131 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~  131 (628)
                      ...++|.|...+.+|.|+|++.+.++..   ...|.|++++...
T Consensus        76 ~se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~  119 (220)
T 3l4c_A           76 ISEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS  119 (220)
T ss_dssp             BSCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred             ceeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence            3457999999999999999999999886   4568999987654

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=83.52  E-value=6.5  Score=36.21  Aligned_cols=98  Identities=12%  Similarity=0.123  Sum_probs=69.8

Q ss_pred             cEEEEEECCeeeeeeccccCCCCCeEeeEEEEEecCC--------CceEEEEEEEcCCCCCeeeEEEecccccccc-Cce
Q 006854           82 PYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT-GEL  152 (628)
Q Consensus        82 pyv~v~l~~~~~~kT~v~~~~~~P~wne~f~~~~~~~--------~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~-~~~  152 (628)
                      .||.+.+-......|.+.. ..+|.+|-+-.+.+.-.        ...+.+++..........||.+.|+|.++.. .+.
T Consensus        44 tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~~  122 (156)
T 2yrb_A           44 TFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILEKSGR  122 (156)
T ss_dssp             EEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHHCCSC
T ss_pred             EEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhCcCCc
Confidence            4666666565545566655 88999998888877543        3468888888654336899999999999884 344


Q ss_pred             eEEEEEccCCCCCCCCCCceEEEEEEEee
Q 006854          153 ISRWYDIIAPSGSPPKPGASIQLELKFTP  181 (628)
Q Consensus       153 ~~~w~~L~~~~~~~~~~~g~i~l~l~y~p  181 (628)
                      +.+-.+|.+..+. ...-|.|.+.|+...
T Consensus       123 i~g~~~L~g~~g~-~~~~G~LeywiRL~~  150 (156)
T 2yrb_A          123 IFCTASLIGTKGD-IPNFGTVEYWFRLRV  150 (156)
T ss_dssp             EEEEEEECBSSSC-CTTSEEEEEEEEEEE
T ss_pred             eEEEEEEEcCCCC-cceEEEEEEEEEEec
Confidence            6667788776552 125699999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	628
d1v0wa1	258	d.136.1.2 (A:6-263) Phospholipase D {Streptomyces	3e-11
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	4e-11
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	6e-10
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	9e-10
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	2e-08
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	6e-08
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	3e-07
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-07
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	7e-07
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-06
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-05
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-05
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	3e-05
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	3e-05
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-05
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	0.003

>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Phospholipase D
domain: Phospholipase D
species: Streptomyces sp. [TaxId: 1931]

 Score = 62.0 bits (150), Expect = 3e-11
 Identities = 32/237 (13%), Positives = 58/237 (24%), Gaps = 64/237 (27%)

Query: 228 PEIPLDGGKLYKPGT--CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDL 285
           P    D     + GT      +   I  A   + I   + F                   
Sbjct: 48  PGCWGDDKCADRVGTKRLLAKMTENIGNATRTVDISTLAPFPNGAFQDA----------- 96

Query: 286 TLGELLKYKSEEGVRV-LLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA 344
            +   LK  + +G ++ + ++      +          M     + +             
Sbjct: 97  -IVAGLKESAAKGNKLKVRILVGAAPVYH---------MNVIPSKYRDELTAKLGKAAEN 146

Query: 345 PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHR 404
                + ++  K         +H K ++VD Q        +A  GGI+     Y    H 
Sbjct: 147 ITLNVASMTTSK----TAFSWNHSKILVVDGQ--------SALTGGINSWKDDYLDTTH- 193

Query: 405 LFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461
                                      P  D+   L GPAA       +  W    +
Sbjct: 194 ---------------------------PVSDVDLALTGPAAGSAGRYLDTLWTWTCQ 223

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 59.0 bits (142), Expect = 4e-11
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 48/168 (28%)

Query: 16  HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKS 75
           HG L++ ++ A+ L + D ++                                       
Sbjct: 9   HGTLEVVLVSAKGLEDADFLN--------------------------------------- 29

Query: 76  KIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA- 134
                DPYV +                  P WNE F   ++   + L+ ++ D DV    
Sbjct: 30  ---NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTED 86

Query: 135 QIIGTAAIPAHTIAT-GELISRWYDIIAPSGSPPKPGASIQLELKFTP 181
             +G A IP   +   G +    Y+++       +    I + L F P
Sbjct: 87  DAVGEATIPLEPVFVEGSIPPTAYNVVKDE----EYKGEIWVALSFKP 130

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (132), Expect = 6e-10
 Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 79  TSDPYVTVVVPQATV--ARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGAQ 135
           T DPYV + +        RTR   N   PVWNE F   L     N LEI + D +    +
Sbjct: 26  TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 85

Query: 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPC 182
            +GTA     ++  GE     +               + LE+     
Sbjct: 86  TLGTATFTVSSMKVGEKKEVPFIF--------NQVTEMVLEMSLEVA 124

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 54.9 bits (131), Expect = 9e-10
 Identities = 19/173 (10%), Positives = 45/173 (26%), Gaps = 41/173 (23%)

Query: 13  IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKII 72
           +  +G L +KI  A  L                                         + 
Sbjct: 2   VVFNGLLKIKICEAVSLKPTAWSLRDA-------------------------------VG 30

Query: 73  RKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF 132
            + +    DPY+ + V  + + +T   + +  P W++ F   + +          D  + 
Sbjct: 31  PRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIG 90

Query: 133 GAQIIGTAAIPAHTI--ATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCD 183
               +    I    +          W D+        +P   + + +  +   
Sbjct: 91  YDDFVANCTIQFEELLQNGSRHFEDWIDL--------EPEGKVYVIIDLSGSS 135

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.9 bits (121), Expect = 2e-08
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 12/111 (10%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIG 138
             + YVT+ V Q   + T  ++ S +P W + F   +      L ++V +  +    ++G
Sbjct: 19  KFNTYVTLKV-QNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVG 76

Query: 139 TAAIPAHTI--ATGELISRWYDIIAPS--------GSPPKPGASIQLELKF 179
           T  IP  TI  +  E    W  + + +        G+       I L+  F
Sbjct: 77  TVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 6e-08
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 12/91 (13%)

Query: 79  TSDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHPLS----NLEIQVKDDD 130
             +PYV +            RT+ +K + EP WN+ F     H        LEI + D  
Sbjct: 34  PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA 93

Query: 131 VFGA---QIIGTAAIPAHTIATGELISRWYD 158
                  + +G   I   T    +    WY 
Sbjct: 94  RVREEESEFLGEILIELETALLDD-EPHWYK 123

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 65  VRHTSKIIRKSKIITSDPYVTVVVPQA----TVARTRVLKNSQEPVWNEHFNIPLAHPLS 120
           VR    ++       SDPYV + +       +  +T+ +K S  P WNE F   L     
Sbjct: 21  VRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK 80

Query: 121 N--LEIQVKDDDVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPS 163
           +  L +++ D D+      +G+ +     +     +  W+ +++  
Sbjct: 81  DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE 125

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 79  TSDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVFG 133
           TSDPYV V +         T+V + +  PV+NE F   + +       L + V D D F 
Sbjct: 54  TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 113

Query: 134 A-QIIGTAAIPAHTIATGELISRWYDI 159
              IIG   +P +T+  G +   W D+
Sbjct: 114 KHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.3 bits (109), Expect = 7e-07
 Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 15/112 (13%)

Query: 74  KSKIITSDPYVTV----VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
           +++   S P+  V     +           K +  P W   F+  +      ++I +   
Sbjct: 18  QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV-IQIVLMRA 76

Query: 130 DV--FGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179
                    +G + +             W D+        +P A + + +++
Sbjct: 77  AEDPMSEVTVGVSVLAERCKKNNGKAEFWLDL--------QPQAKVLMCVQY 120

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 81  DPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG 133
           DPYV V +     + +  +T V K +   V+NE F   +        ++E  V D +   
Sbjct: 37  DPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGS 96

Query: 134 A-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
             ++IG   + A   A G     W +I       
Sbjct: 97  RNEVIGRLVLGAT--AEGSGGGHWKEICDFPRRQ 128

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 47/164 (28%)

Query: 17  GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSK 76
           G L +K+++A  L   D                                           
Sbjct: 6   GILQVKVLKAADLLAADFSG---------------------------------------- 25

Query: 77  IITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA-Q 135
              SDP+  ++       +T  +  +  P WN+ F  P+      LE+ V D+D      
Sbjct: 26  --KSDPFC-LLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD 82

Query: 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179
            +G  AIP  +I  G+     Y +          G  I LE+  
Sbjct: 83  FLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKG-VIYLEMDL 123

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 74  KSKIITSDPYVTV----VVPQATVARTRVLKNSQ-EPVWNEHFNIPLAHP-LSNLEIQVK 127
           K+K    DP V V    V       +T V+ N+   P W+  F   +  P L+ +   V+
Sbjct: 21  KNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE 80

Query: 128 DDDVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPG 170
           D D       IG + IP +++  G    R   +++ +G      
Sbjct: 81  DYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHPSA 121

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.2 bits (98), Expect = 3e-05
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 34/157 (21%)

Query: 14  YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIR 73
           Y  G+L + I++AR L   D                    P  + +      +       
Sbjct: 15  YDLGNLIIHILQARNLVPRDNNG--------------YSDPFVKVYLLPGRGQVMVVQNA 60

Query: 74  KSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLS----NLEIQVKDD 129
            ++                  RT+ ++ S  P WN+                LE+ V D 
Sbjct: 61  SAEYKR---------------RTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDY 105

Query: 130 DVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGS 165
           D F +   +G   I   + +  +   RWY +   + S
Sbjct: 106 DRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTES 142

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 71  IIRKSKIITSDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLE 123
           +        SDP+V + +     +    +T++ K +  P +NE F   + H      +L+
Sbjct: 27  LAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLD 86

Query: 124 IQVKDDDVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
           I V D D+  +   IG   +       GE +  WY+ +      
Sbjct: 87  ISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKDKK 128

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 79  TSDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDV 131
            SDPYV + +     +    +T + KN+  P +NE F+  +         + + V D D 
Sbjct: 45  LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 104

Query: 132 FGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
            G    IG   +  +  +TG  +  W D++A    P
Sbjct: 105 IGKNDAIGKVFVGYN--STGAELRHWSDMLANPRRP 138

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 9/110 (8%)

Query: 74  KSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG 133
           K       PYV V V   +  +T    N+  P W +   + +    S L  +V       
Sbjct: 21  KKNWFGPSPYVEVTVDGQSK-KTEKCNNTNSPKWKQPLTVIVTPV-SKLHFRVWSHQTLK 78

Query: 134 A-QIIGTAAIPAHTI-----ATGELISRWYDIIAPSGSPPKPGASIQLEL 177
           +  ++GTAA+  +          E +     +          G  + + L
Sbjct: 79  SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIG-DLSICL 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	628
d1v0wa1	258	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	99.93
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.79
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.77
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.76
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.75
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.7
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.67
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.66
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.65
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.65
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.62
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.59
d1byra_	152	Nuclease Nuc {Salmonella typhimurium [TaxId: 90371	99.55
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.54
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.54
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.53
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.52
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.5
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.49
d1v0wa2	246	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	99.46
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.44
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.43
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.23
d1v0wa1	258	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	97.57
d1v0wa2	246	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	97.4
d1byra_	152	Nuclease Nuc {Salmonella typhimurium [TaxId: 90371	97.24
d2o8ra3	188	Polyphosphate kinase, PPK {Porphyromonas gingivali	97.04
d1xdpa3	187	Polyphosphate kinase, PPK {Escherichia coli [TaxId	96.47
d2o8ra4	186	Polyphosphate kinase, PPK {Porphyromonas gingivali	90.64
d1xdpa4	187	Polyphosphate kinase, PPK {Escherichia coli [TaxId	86.44

>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Phospholipase D
domain: Phospholipase D
species: Streptomyces sp. [TaxId: 1931]

Probab=99.93  E-value=2.4e-27  Score=239.49  Aligned_cols=157  Identities=18%  Similarity=0.178  Sum_probs=117.0

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcC--CEEEEEEecCCCccCccccc
Q 006854          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLVWDDKTSHDKLGVK  318 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rG--V~VrILvwD~~gs~~~~~~~  318 (628)
                      +++|++|+++|++|+++|+|++|+|.|+..          .|  ..|.++|++||+||  |+||||+ |..|+....   
T Consensus        63 ~~~~~~~~~~I~~A~~~I~i~~~~~~pd~~----------~~--~~i~~aL~~aA~rG~~V~VriL~-d~~gs~~~~---  126 (258)
T d1v0wa1          63 KRLLAKMTENIGNATRTVDISTLAPFPNGA----------FQ--DAIVAGLKESAAKGNKLKVRILV-GAAPVYHMN---  126 (258)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEEESSCCCHH----------HH--HHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCC---
T ss_pred             HHHHHHHHHHHHHhccEEEEEEEEEcCCch----------HH--HHHHHHHHHHHhCCCCeEEEEEe-CCccccccc---
Confidence            578999999999999999999998766321          12  67999999999999  9999995 999876421   


Q ss_pred             CCCcccCChHHHHhhhccCCce----EEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCC
Q 006854          319 TPGVMATHDEETKKFFKHSSVN----CVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC  394 (628)
Q Consensus       319 ~~~~~~~~~~~~~~~l~~~gv~----~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~  394 (628)
                            .......+.|...+++    +.+.......        ....+.|||+|++||||+        +||+||+||+
T Consensus       127 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~rnH~Ki~VVDg~--------~a~vGG~Ni~  184 (258)
T d1v0wa1         127 ------VIPSKYRDELTAKLGKAAENITLNVASMTT--------SKTAFSWNHSKILVVDGQ--------SALTGGINSW  184 (258)
T ss_dssp             ------CHHHHHHHHHHHHHGGGGGGEEEEEEEECS--------BTTTTBCBCCCEEEETTT--------EEEEESCCCC
T ss_pred             ------cchHHHHHHHHHhccceeeccccccccccc--------cccccccccceEEEEcCC--------EEEECCcccC
Confidence                  0123344444443333    2211000000        123356899999999998        9999999999


Q ss_pred             CCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHHHHHHHHHHHHHhhhcccc
Q 006854          395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLT  463 (628)
Q Consensus       395 ~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav~~l~~~F~~rW~~~~~~~  463 (628)
                      ++||+..                            ..+|||++++|+||+|.+++..|.++|+.+++++
T Consensus       185 ~~~~~~~----------------------------~~~w~D~~~~v~Gp~v~~~~~~F~~~W~~~~~e~  225 (258)
T d1v0wa1         185 KDDYLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNK  225 (258)
T ss_dssp             HHHHTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccCC----------------------------CCCeeeeEEEEECHHHHHHHHHHHHHHHHHhCCC
Confidence            9888642                            2379999999999999999999999999988774

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.3e-19  Score=159.79  Aligned_cols=118  Identities=25%  Similarity=0.421  Sum_probs=103.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT   96 (628)
                      |.|.|+|++|++|+.++..+.                                          +||||++.+++.+ .+|
T Consensus         6 G~L~V~v~~A~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~-~~T   42 (126)
T d2ep6a1           6 GILQVKVLKAADLLAADFSGK------------------------------------------SDPFCLLELGNDR-LQT   42 (126)
T ss_dssp             EEEEEEEEEEESCCCSSSSSC------------------------------------------CCEEEEEEETTEE-EEC
T ss_pred             EEEEEEEEEeECCCCCCCCCC------------------------------------------cCeEEEEEcCCeE-EEE
Confidence            899999999999998877665                                          9999999998865 699


Q ss_pred             ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 006854           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL  175 (628)
Q Consensus        97 ~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~i~l  175 (628)
                      ++++++.||.|||+|.|.+..+...|.|+|||++.++ +++||++.+++.++..+.  .+|+.|... .......|+|+|
T Consensus        43 ~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~-~~~~~~~G~i~l  119 (126)
T d2ep6a1          43 HTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNK-DLEQAFKGVIYL  119 (126)
T ss_dssp             CCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCS-CTTSCCSSEEEE
T ss_pred             EeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcceEEEEEEEHHHCCCCC--ceEEEcccc-CCCCceeEEEEE
Confidence            9999999999999999999988889999999999988 899999999999998664  479888433 333456799999


Q ss_pred             EEEEe
Q 006854          176 ELKFT  180 (628)
Q Consensus       176 ~l~y~  180 (628)
                      +++|.
T Consensus       120 ~~~~i  124 (126)
T d2ep6a1         120 EMDLI  124 (126)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99976

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.77  E-value=2.3e-18  Score=156.61  Aligned_cols=132  Identities=17%  Similarity=0.378  Sum_probs=106.4

Q ss_pred             eEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCe
Q 006854           12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA   91 (628)
Q Consensus        12 ~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~   91 (628)
                      +.+.+|.|.|+|++|++|++.+..+.   +.                            +-.....+.+||||++.++..
T Consensus         1 ~~~~~G~L~v~I~~A~~L~~~~~~~~---~~----------------------------~~~~~~~~~~DPYv~v~l~~~   49 (136)
T d1gmia_           1 MVVFNGLLKIKICEAVSLKPTAWSLR---DA----------------------------VGPRPQTFLLDPYIALNVDDS   49 (136)
T ss_dssp             CCCEEEEEEEEEEEEESCCCCHHHHC---C-----------------------------CCSSCCCCCCCEEEEEEETTE
T ss_pred             CccEEEEEEEEEEEeECCCccccccc---cc----------------------------ccccCCCCCcCcEEEEEeCCC
Confidence            35689999999999999998653321   00                            001222335999999999988


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccccC--ceeEEEEEccCCCCCCCC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDIIAPSGSPPK  168 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~  168 (628)
                      ...+|++++++.||.|||+|.|.+.. ...|+|+|||++.++ +++||.+.|+|.++...  ...+.|++|.        
T Consensus        50 ~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------  120 (136)
T d1gmia_          50 RIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--------  120 (136)
T ss_dssp             EEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------
T ss_pred             cCcEeeEEcCCCCccCccEEEEEEec-CCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC--------
Confidence            87899999999999999999999975 467999999999988 89999999999998744  3567899993        


Q ss_pred             CCceEEEEEEEeecC
Q 006854          169 PGASIQLELKFTPCD  183 (628)
Q Consensus       169 ~~g~i~l~l~y~p~~  183 (628)
                      +.|+|++.+.+.++.
T Consensus       121 p~G~v~l~v~~~~~~  135 (136)
T d1gmia_         121 PEGKVYVIIDLSGSS  135 (136)
T ss_dssp             SSCEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEeCC
Confidence            249999999999864

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=1.4e-18  Score=157.61  Aligned_cols=123  Identities=24%  Similarity=0.490  Sum_probs=104.2

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~   94 (628)
                      +.|.|.|+|++|++|++++..+.                                          +||||++.+++.. .
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~-~   44 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNN------------------------------------------MDPYVQLTCRTQD-Q   44 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCS------------------------------------------SCCCEEEESSSCE-E
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCC------------------------------------------CCccEEEEEeeee-E
Confidence            35899999999999998886665                                          9999999998866 5


Q ss_pred             eecccc-CCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEeccccccc-cCceeEEEEEccCCCCCCCCCCc
Q 006854           95 RTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRWYDIIAPSGSPPKPGA  171 (628)
Q Consensus        95 kT~v~~-~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~~g  171 (628)
                      +|++++ ++.||.|||+|.|.+......|.|+|||++.++ |++||.+.|+|.++. .+.....|+.|... +   +..|
T Consensus        45 ~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~-~---~~~G  120 (136)
T d1wfja_          45 KSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD-E---EYKG  120 (136)
T ss_dssp             ECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEET-T---EEEE
T ss_pred             EEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecCC-C---ccCE
Confidence            777776 589999999999999988888999999999997 899999999999875 35556789998532 2   3569


Q ss_pred             eEEEEEEEeecCC
Q 006854          172 SIQLELKFTPCDK  184 (628)
Q Consensus       172 ~i~l~l~y~p~~~  184 (628)
                      +|+|+++|.|...
T Consensus       121 ~i~l~l~~~p~~p  133 (136)
T d1wfja_         121 EIWVALSFKPSGP  133 (136)
T ss_dssp             EEEEEEEEEECCS
T ss_pred             EEEEEEEEEeCCC
Confidence            9999999999543

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.4e-18  Score=152.81  Aligned_cols=122  Identities=23%  Similarity=0.380  Sum_probs=101.2

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--eee
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV   93 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~~   93 (628)
                      .+.|.|+|++|++|+......     .+                                  +++||||++.+++  ...
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d-----~~----------------------------------~~~Dpyv~v~l~~~~~~~   42 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGD-----ML----------------------------------DTPDPYVELFISTTPDSR   42 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHH-----HH----------------------------------CCCCEEEEEECTTSTTCC
T ss_pred             CcEEEEEEEEccCCCCccccc-----cC----------------------------------CCCCcEEEEEECCcccce
Confidence            368999999999999642210     11                                  1389999999976  345


Q ss_pred             eeeccccCCCCCeEeeEEEEEecCCC-ceEEEEEEEcCCCCCeeeEEEeccccccccCceeEEEEEccCCCCCCCCCCce
Q 006854           94 ARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS  172 (628)
Q Consensus        94 ~kT~v~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~g~  172 (628)
                      .+|++++++.||.|||+|.|.+.... ..|.|+|||++..++++||.+.++|+++..++....||+|. +.     ..|+
T Consensus        43 ~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~-~~-----~~g~  116 (126)
T d1rlwa_          43 KRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN-QV-----TEMV  116 (126)
T ss_dssp             EECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEET-TT-----EEEE
T ss_pred             eEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCCCCCeEEEEEEEHHHccCCCeEEEEEEcc-CC-----CeEE
Confidence            79999999999999999999987764 57999999999988999999999999999999999999993 32     3499


Q ss_pred             EEEEEEEeec
Q 006854          173 IQLELKFTPC  182 (628)
Q Consensus       173 i~l~l~y~p~  182 (628)
                      |+++|+++|+
T Consensus       117 i~~~l~~~~s  126 (126)
T d1rlwa_         117 LEMSLEVASS  126 (126)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEEEeC
Confidence            9999998874

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=6.4e-17  Score=145.84  Aligned_cols=109  Identities=22%  Similarity=0.378  Sum_probs=93.4

Q ss_pred             ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854           10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP   89 (628)
Q Consensus        10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~   89 (628)
                      ++..+-.+.|.|+|++|++|+.++..+.                                          +||||++.+.
T Consensus         8 l~~~~~~~~L~V~V~~a~~L~~~d~~g~------------------------------------------~DpYv~v~l~   45 (132)
T d1a25a_           8 IQAHIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLI   45 (132)
T ss_dssp             EEEEESSSEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEE
T ss_pred             EEEEecCCEEEEEEEeeeCCCCCCCCCC------------------------------------------cCeEEEEEEc
Confidence            4466778999999999999998876664                                          9999999983


Q ss_pred             C----eeeeeeccccCCCCCeEeeEEEEEecCC--CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccC
Q 006854           90 Q----ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA  161 (628)
Q Consensus        90 ~----~~~~kT~v~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~  161 (628)
                      +    ..+.+|++++++.||.|||+|.|.+...  ...|.|+|||.|.++ +++||.+.|++.++..+ ..++||+|.+
T Consensus        46 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~  123 (132)
T d1a25a_          46 PDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  123 (132)
T ss_dssp             SCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             cCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence            2    4457999999999999999999998765  346999999999988 89999999999998754 4689999954

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2e-16  Score=143.10  Aligned_cols=123  Identities=18%  Similarity=0.276  Sum_probs=97.8

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~   94 (628)
                      +.++|.|+|++|++|+..+..+.                                          +||||++.+++.. .
T Consensus         4 ~~~~L~v~v~~A~~~~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~   40 (133)
T d2nq3a1           4 MKSQLQITVISAKLKENKKNWFG------------------------------------------PSPYVEVTVDGQS-K   40 (133)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCC------------------------------------------CCEEEEEEETTEE-E
T ss_pred             cceEEEEEEEEeECCCcCCCCCC------------------------------------------cCeEEEEEECCeE-E
Confidence            34889999999999997665554                                          9999999999865 6


Q ss_pred             eeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCC-CeeeEEEecccccccc---Cc--eeEEEEEccCCCCCCCC
Q 006854           95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GE--LISRWYDIIAPSGSPPK  168 (628)
Q Consensus        95 kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~---~~--~~~~w~~L~~~~~~~~~  168 (628)
                      +|++++++.||.|||.|.|.+.+ ...|+|+|||++.++ |++||.+.++|.++..   +.  ....|+.+.. ..+...
T Consensus        41 kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~-~~~~~~  118 (133)
T d2nq3a1          41 KTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG-DKEPTE  118 (133)
T ss_dssp             ECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEE-SSCTTS
T ss_pred             eeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCC-CCCCce
Confidence            99999999999999999999976 568999999999998 8999999999998752   22  2344555532 233445


Q ss_pred             CCceEEEEEEEeec
Q 006854          169 PGASIQLELKFTPC  182 (628)
Q Consensus       169 ~~g~i~l~l~y~p~  182 (628)
                      ..|+|.+.|.+...
T Consensus       119 ~~G~L~v~l~~~~~  132 (133)
T d2nq3a1         119 TIGDLSICLDGLQL  132 (133)
T ss_dssp             EEEEEEEEEESEEC
T ss_pred             EEEEEEEEEeeEEc
Confidence            67999999887653

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=7.1e-16  Score=138.53  Aligned_cols=116  Identities=21%  Similarity=0.336  Sum_probs=94.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECCeeeeee
Q 006854           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (628)
Q Consensus        17 g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT   96 (628)
                      +.|+|+|++|++|.+++   .                                          +||||++.+++.+ .+|
T Consensus         2 ~~L~V~v~~a~~l~~~~---~------------------------------------------~dpYv~l~~~~~k-~~T   35 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---K------------------------------------------FNTYVTLKVQNVK-STT   35 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---G------------------------------------------CEEEEEEEETTEE-EEC
T ss_pred             eEEEEEEEEEECCCCCC---C------------------------------------------cCeEEEEEeCCEE-EEE
Confidence            57999999999998643   2                                          8999999998865 688


Q ss_pred             ccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccccC--ceeEEEEEccCCC--------CCC
Q 006854           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG--ELISRWYDIIAPS--------GSP  166 (628)
Q Consensus        97 ~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~~--~~~~~w~~L~~~~--------~~~  166 (628)
                      ++++. .||.|||+|.|.+..+...|.|+|||++..+|++||.+.|||+++...  ....+||+|..+.        |..
T Consensus        36 ~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~  114 (128)
T d2cjta1          36 IAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTK  114 (128)
T ss_dssp             CCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCS
T ss_pred             EEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCcCCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeee
Confidence            88865 599999999999999888999999999998899999999999998743  3456899995332        223


Q ss_pred             CCCCceEEEEEEE
Q 006854          167 PKPGASIQLELKF  179 (628)
Q Consensus       167 ~~~~g~i~l~l~y  179 (628)
                      ....+.|+++++|
T Consensus       115 ~~~~~~~ll~~~~  127 (128)
T d2cjta1         115 DPTFHRILLDAHF  127 (128)
T ss_dssp             CCCCCEEEEEEEE
T ss_pred             cCCCcEEEEEEEc
Confidence            3445678888877

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=8.2e-17  Score=146.59  Aligned_cols=111  Identities=27%  Similarity=0.401  Sum_probs=93.9

Q ss_pred             ceeEeeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEEC
Q 006854           10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP   89 (628)
Q Consensus        10 ~~~~~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~   89 (628)
                      +.+.|-.|.|.|+|++|++|+.++..+.                                          +||||++.+.
T Consensus        11 lsl~y~~~~L~V~V~~A~~L~~~d~~g~------------------------------------------~DpyV~v~l~   48 (142)
T d1rh8a_          11 LQINYDLGNLIIHILQARNLVPRDNNGY------------------------------------------SDPFVKVYLL   48 (142)
T ss_dssp             EEEEEETTEEEEEEEEEESCCCCSSSSC------------------------------------------SCCEEEEEET
T ss_pred             EEEEEeCCEEEEEEEEeECCCCcCCCCC------------------------------------------CCcCEEEEEe
Confidence            3467788999999999999998876664                                          9999999984


Q ss_pred             C-------------eeeeeeccccCCCCCeEeeEEEEEecC----CCceEEEEEEEcCCCC-CeeeEEEeccccccccCc
Q 006854           90 Q-------------ATVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE  151 (628)
Q Consensus        90 ~-------------~~~~kT~v~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~  151 (628)
                      +             ....||++++++.||.|||+|.|....    ....|.|+|||++.++ +++||.+.|+|.++..+.
T Consensus        49 ~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~  128 (142)
T d1rh8a_          49 PGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD  128 (142)
T ss_dssp             TSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT
T ss_pred             cCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCC
Confidence            3             122579999999999999999998443    2557999999999988 899999999999999888


Q ss_pred             eeEEEEEccCC
Q 006854          152 LISRWYDIIAP  162 (628)
Q Consensus       152 ~~~~w~~L~~~  162 (628)
                      ...+||+|...
T Consensus       129 ~~~~W~~L~~~  139 (142)
T d1rh8a_         129 NTPRWYPLKEQ  139 (142)
T ss_dssp             TCCEEEECBCC
T ss_pred             CceEEEECcCc
Confidence            88999999543

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.7e-16  Score=142.81  Aligned_cols=104  Identities=33%  Similarity=0.531  Sum_probs=90.9

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT   92 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~   92 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+  ..
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~~g~------------------------------------------~dpyV~v~l~~~~~~   69 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK   69 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETTCCS
T ss_pred             CCCEEEEEEEEccCCCCCCCCCC------------------------------------------CCeEEEEEEcCCCCe
Confidence            46789999999999998775554                                          89999999843  45


Q ss_pred             eeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEcc
Q 006854           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (628)
Q Consensus        93 ~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~  160 (628)
                      ..+|++++++.||.|||+|.|.+...   ...|.|+|||.+.++ +++||.+.|+|.++..+....+||+|.
T Consensus        70 ~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  141 (143)
T d1rsya_          70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             eEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence            57999999999999999999987653   467999999999988 889999999999999888889999994

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=2.8e-15  Score=134.87  Aligned_cols=121  Identities=24%  Similarity=0.466  Sum_probs=93.7

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~   91 (628)
                      ...|+|+|++|++|+.++....                                        +.+||||++.+.+    .
T Consensus         3 p~~l~V~Vi~a~~L~~~~~~~~----------------------------------------~~~DPyV~v~l~g~~~~~   42 (131)
T d1qasa2           3 PERLRVRIISGQQLPKVNKNKN----------------------------------------SIVDPKVIVEIHGVGRDT   42 (131)
T ss_dssp             CEEEEEEEEEEESCCCCC---------------------------------------------CCCEEEEEEEESSTTTC
T ss_pred             cEEEEEEEEEeeCCCCCCCCCC----------------------------------------CCcCeEEEEEEccCCCCc
Confidence            4679999999999986543211                                        1289999999832    4


Q ss_pred             eeeeeccccC-CCCCeEeeEEEEEecCC-CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCCCC
Q 006854           92 TVARTRVLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK  168 (628)
Q Consensus        92 ~~~kT~v~~~-~~~P~wne~f~~~~~~~-~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~  168 (628)
                      ...+|+++++ +.||.|||+|.|.+..+ ...|.|+|||+|.++ +++||++.|||+++..|   .+|++|.+..|++. 
T Consensus        43 ~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~-  118 (131)
T d1qasa2          43 GSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQH-  118 (131)
T ss_dssp             EEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECCTTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEE-
T ss_pred             EEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEecCCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCC-
Confidence            5578998766 57999999999988765 456899999999998 89999999999999865   46999987776532 


Q ss_pred             CCceEEEEEEEe
Q 006854          169 PGASIQLELKFT  180 (628)
Q Consensus       169 ~~g~i~l~l~y~  180 (628)
                      ..++|.+++++.
T Consensus       119 ~~~~L~v~i~~~  130 (131)
T d1qasa2         119 PSATLFVKISIQ  130 (131)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEE
Confidence            245777777764

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=1.6e-15  Score=136.25  Aligned_cols=106  Identities=27%  Similarity=0.421  Sum_probs=86.5

Q ss_pred             eeceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--e
Q 006854           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A   91 (628)
Q Consensus        14 ~~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~   91 (628)
                      ...+.|.|+|++|++|+.++..+.                                          +||||++++.+  .
T Consensus        15 ~~~~~L~V~V~~a~~L~~~~~~g~------------------------------------------~dpyv~v~l~~~~~   52 (130)
T d1dqva1          15 YGSDQLVVRILQALDLPAKDSNGF------------------------------------------SDPYVKIYLLPDRK   52 (130)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSC------------------------------------------CCEEEEEECTTSTT
T ss_pred             CCCCEEEEEEEeeeCCccccCCCC------------------------------------------cceEEEEEEccCCC
Confidence            356789999999999998776654                                          89999999854  4


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecccccc-c-cCceeEEEEEccC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI-A-TGELISRWYDIIA  161 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l-~-~~~~~~~w~~L~~  161 (628)
                      ...+|++++++.||.|||+|.|.+...   ...|.|+|||++.++ +++||.+.|++... . .......|++|..
T Consensus        53 ~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          53 KKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             SCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             ceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            457999999999999999999998764   456999999999987 89999999986433 2 2234457999953

>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Nuclease
domain: Nuclease Nuc
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.55  E-value=7.8e-15  Score=134.72  Aligned_cols=134  Identities=16%  Similarity=0.237  Sum_probs=100.3

Q ss_pred             chHHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCC
Q 006854          242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG  321 (628)
Q Consensus       242 ~~f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~  321 (628)
                      .+.+.++++|++|+++|+|+.|.|++                 ..|.++|++|++|||+||||+ |..+.....      
T Consensus        13 ~~~~~i~~~I~~A~~~I~I~~~~~~~-----------------~~i~~aL~~a~~rGV~Vril~-~~~~~~~~~------   68 (152)
T d1byra_          13 SARVLVLSAIDSAKTSIRMMAYSFTA-----------------PDIMKALVAAKKRGVDVKIVI-DERGNTGRA------   68 (152)
T ss_dssp             HHHHHHHHHHHHCSSEEEEEESSBCC-----------------HHHHHHHHHHHHTTCEEEEEE-ESTTCCSHH------
T ss_pred             cHHHHHHHHHHhCCcEEEEEEEeecC-----------------HHHHHHHHHHHhcCCeEEEEE-Eeecccchh------
Confidence            46788999999999999999997743                 469999999999999999996 877543210      


Q ss_pred             cccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCC
Q 006854          322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTP  401 (628)
Q Consensus       322 ~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~  401 (628)
                           .......+...++.+....                ....+|.|++|||++        ++|+|++|++...+.  
T Consensus        69 -----~~~~~~~~~~~~~~~~~~~----------------~~~~~H~K~~ivD~~--------~~~~GS~N~t~~~~~--  117 (152)
T d1byra_          69 -----SIAAMNYIANSGIPLRTDS----------------NFPIQHDKVIIVDNV--------TVETGSFNFTKAAET--  117 (152)
T ss_dssp             -----HHHHHHHHHHTTCCEEEEC----------------SSSCCCCCEEEETTT--------EEEEESCCBSHHHHH--
T ss_pred             -----hHHHHHHhhhccccccccc----------------cccccccceEEecCc--------eeEecccCCChHHHh--
Confidence                 1223344555666655311                123569999999998        999999999884331  


Q ss_pred             CCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeC--HHHHHHHHHHHHHHhhhc
Q 006854          402 EHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG--PAAYDVLINFEQRWRKAT  460 (628)
Q Consensus       402 ~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~G--pav~~l~~~F~~rW~~~~  460 (628)
                                                    ..++..+.+++  ++++.+.+.|.+.|+.+.
T Consensus       118 ------------------------------~n~e~~~~i~~~~~v~~~~~~~F~~~w~~~~  148 (152)
T d1byra_         118 ------------------------------KNSENAVVIWNMPKLAESFLEHWQDRWNQGR  148 (152)
T ss_dssp             ------------------------------TSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred             ------------------------------cCCcceEEEEcCHHHHHHHHHHHHHHHhhCC
Confidence                                          12467777865  478999999999998653

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-14  Score=129.16  Aligned_cols=102  Identities=25%  Similarity=0.435  Sum_probs=81.1

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+    
T Consensus        12 ~~~~L~V~V~~a~~L~~~~~~~~------------------------------------------~dpyVkv~l~~~~~~   49 (125)
T d2bwqa1          12 VGHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSD   49 (125)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCC------------------------------------------BCEEEEEEEESSCSG
T ss_pred             CCCEEEEEEEEeECCCCcCCCCC------------------------------------------CCEEEEEEEeCCCCC
Confidence            36789999999999997765543                                          89999999843    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCC---CeeeEEEeccccccccCceeEEEEEc
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDI  159 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~---~~~iG~~~i~l~~l~~~~~~~~w~~L  159 (628)
                      ....||++++++.+|.|||+|.|. +...   ...|.|+|||.+.++   +++||.+.|+|+++...+ ..+||+|
T Consensus        50 ~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L  124 (125)
T d2bwqa1          50 KNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL  124 (125)
T ss_dssp             GGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             ccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeC
Confidence            445799999999999999999997 4432   346999999999764   569999999999988554 4689998

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.3e-14  Score=129.99  Aligned_cols=102  Identities=19%  Similarity=0.279  Sum_probs=87.4

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC---e
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A   91 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---~   91 (628)
                      ..+.|.|+|++|++|+.   .+                                          ++||||++.|.+   .
T Consensus        24 ~~~~L~V~v~~a~~L~~---~g------------------------------------------~~dpyVkv~l~~~~~~   58 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH---DG------------------------------------------GCDCYVQGSVANRTGS   58 (138)
T ss_dssp             TTTEEEEEEEEEECCCC---SS------------------------------------------CCCEEEEEEEEETTEE
T ss_pred             CCCEEEEEEEEcCCCCC---CC------------------------------------------CcCcEEEEEECCCCCc
Confidence            36789999999999963   22                                          289999999854   3


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA  161 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~  161 (628)
                      ...+|++++++.||.|||.|.|.+...   ...|.|+|||.+.++ +++||.+.|+|.++..++..+.|++|..
T Consensus        59 ~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~  132 (138)
T d1wfma_          59 VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             EEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             cceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence            356899999999999999999998764   467999999999988 8999999999999988888899999943

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.3e-14  Score=129.85  Aligned_cols=91  Identities=27%  Similarity=0.392  Sum_probs=73.1

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|++|+.++..+.                                          +||||++.+.+    
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyvkv~l~~~~~~   50 (138)
T d1w15a_          13 TTNTLTVVVLKARHLPKSDVSGL------------------------------------------SDPYVKVNLYHAKKR   50 (138)
T ss_dssp             TTTEEEEEEEEEESCC------C------------------------------------------CCEEEEEEEEETTEE
T ss_pred             CCCEEEEEEEEeECCCCCCCCCC------------------------------------------cCEEEEEEEeCCccc
Confidence            35789999999999998776554                                          89999999832    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEecccccc
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI  147 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l  147 (628)
                      ....||++++++.||.|||+|.|.++..   ...|.|+|||.+.++ +++||.+.|++...
T Consensus        51 ~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          51 ISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             EEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred             CccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence            3346899999999999999999998764   346899999999988 99999999999753

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.4e-15  Score=135.88  Aligned_cols=106  Identities=27%  Similarity=0.444  Sum_probs=86.1

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|.|++|++|+.++..+.                                          +||||++.+.+    
T Consensus        13 ~~~~L~V~v~~a~nL~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~   50 (137)
T d2cm5a1          13 QQGGLIVGIIRCVHLAAMDANGY------------------------------------------SDPFVKLWLKPDMGK   50 (137)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETC---
T ss_pred             CCCEEEEEEEEEECCCCCCCCCC------------------------------------------cCeEEEEEEEcCCcc
Confidence            56789999999999998765554                                          99999999832    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCC
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG  164 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  164 (628)
                      ....||++++++.+|.|||+|.|.+...   ...|.|+|||.+.++ +++||.+.+++..+.  +..++|++|....+
T Consensus        51 ~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~~~~  126 (137)
T d2cm5a1          51 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKNKD  126 (137)
T ss_dssp             CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHHCTT
T ss_pred             ceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCccccC--cchhhhhhHhhCCC
Confidence            4456999999999999999999998764   457999999999987 899999999998643  23456777655443

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.1e-14  Score=126.66  Aligned_cols=106  Identities=29%  Similarity=0.423  Sum_probs=84.8

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC--ee
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT   92 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~   92 (628)
                      ..+.|.|+|++|++|+.++..+.                                         ++||||++.+.+  ..
T Consensus        20 ~~~~L~V~V~~a~~L~~~d~~~~-----------------------------------------~~dpyV~v~l~~~~~~   58 (138)
T d1ugka_          20 ERKAFVVNIKEARGLPAMDEQSM-----------------------------------------TSDPYIKMTILPEKKH   58 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTT-----------------------------------------BCEEEEEEEEETTTCS
T ss_pred             CCCEEEEEEEEecCCCCCCCCCC-----------------------------------------ccceEEEEEEcCCCCE
Confidence            34679999999999998765442                                         279999999843  44


Q ss_pred             eeeeccccCCCCCeEeeEEEEE-ecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccC-ceeEEEEEccC
Q 006854           93 VARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDIIA  161 (628)
Q Consensus        93 ~~kT~v~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~-~~~~~w~~L~~  161 (628)
                      ..||++++++.||.|||+|.|. +...   ...|.|+|||.+.++ +++||.+.|+|+++... .....|..+..
T Consensus        59 ~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~  133 (138)
T d1ugka_          59 KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             eEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeeccC
Confidence            5799999999999999999997 4432   357999999999987 89999999999998643 34556766643

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=7.2e-14  Score=129.41  Aligned_cols=104  Identities=27%  Similarity=0.447  Sum_probs=85.9

Q ss_pred             eceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----
Q 006854           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (628)
Q Consensus        15 ~~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----   90 (628)
                      ..+.|.|+|++|++|+..+..+.                                          +||||++.+.+    
T Consensus        23 ~~~~L~V~V~~a~~L~~~~~~~~------------------------------------------~dpyV~v~l~~~~~~   60 (157)
T d1uowa_          23 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR   60 (157)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEE
T ss_pred             CCCEEEEEEEEEEEcccccCCCC------------------------------------------CCeeEEEEEecCCcc
Confidence            34789999999999998766554                                          99999999854    


Q ss_pred             eeeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccc------------cCceeE
Q 006854           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA------------TGELIS  154 (628)
Q Consensus        91 ~~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~------------~~~~~~  154 (628)
                      ....+|++++++.||+|||+|.|.++..   ...|.|+|||.+.++ +++||.+.|++....            ....+.
T Consensus        61 ~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~  140 (157)
T d1uowa_          61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA  140 (157)
T ss_dssp             EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEE
T ss_pred             ccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCcee
Confidence            2345899999999999999999998765   357999999999998 899999999996532            234567


Q ss_pred             EEEEcc
Q 006854          155 RWYDII  160 (628)
Q Consensus       155 ~w~~L~  160 (628)
                      +|++|.
T Consensus       141 ~Wh~L~  146 (157)
T d1uowa_         141 QWHTLQ  146 (157)
T ss_dssp             EEEECB
T ss_pred             EeEeCC
Confidence            899983

>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Phospholipase D
domain: Phospholipase D
species: Streptomyces sp. [TaxId: 1931]

Probab=99.46  E-value=2.1e-13  Score=135.63  Aligned_cols=161  Identities=18%  Similarity=0.242  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhccceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcc
Q 006854          244 WEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVM  323 (628)
Q Consensus       244 f~~l~~aI~~Ak~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~  323 (628)
                      ..++..+|++|+++|+|+.+.|.++..    +.. . .  ...+.++|.+|++|||+||||+ |..++............
T Consensus        56 e~a~~~lI~~A~~~I~I~~q~~~~~~~----p~~-~-~--~~~l~~AL~~aa~RGV~Vrvll-~~~~~~~~~~~~~~~~~  126 (246)
T d1v0wa2          56 ESALRALVASAKGHIEISQQDLNATCP----PLP-R-Y--DIRLYDALAAKMAAGVKVRIVV-SDPANRGAVGSGGYSQI  126 (246)
T ss_dssp             HHHHHHHHHTCSSEEEEEESCSSCCTT----TSC-S-C--CHHHHHHHHHHHHTTCEEEEEE-CCGGGCC------CCCC
T ss_pred             HHHHHHHHHhcCcEEEEEEEeecccCC----ccc-c-c--cHHHHHHHHHHHHcCCcEEEEE-ecCCcccccccchHHHH
Confidence            467999999999999999887754211    100 0 1  2579999999999999999997 87654322111111111


Q ss_pred             cCChHH---HHhhh-------------ccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEE
Q 006854          324 ATHDEE---TKKFF-------------KHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF  387 (628)
Q Consensus       324 ~~~~~~---~~~~l-------------~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vaf  387 (628)
                      ....+.   ....+             ...+..+..... .. ...+    ..+...++|.|++|||++        ++|
T Consensus       127 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~----~~~~~~~lH~K~~VVD~~--------~~~  192 (246)
T d1v0wa2         127 KSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRS-SP-NGKW----ADGHPYAQHHKLVSVDSS--------TFY  192 (246)
T ss_dssp             SCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCS-SS-SSSC----TTSCCCCBCCEEEEETTT--------EEE
T ss_pred             HHHHHhcchhhhccccccchhhhhccccccccceeeeec-cc-Cccc----cCCcccccceeEEEEcCC--------EEE
Confidence            111111   11111             011223322101 00 0001    223456899999999999        999


Q ss_pred             EccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHHH-HHHHH-HHHHHHhhhccc
Q 006854          388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAA-YDVLI-NFEQRWRKATKL  462 (628)
Q Consensus       388 vGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpav-~~l~~-~F~~rW~~~~~~  462 (628)
                      +||.|+.. +|                                  |+|..+.|+||.+ ++|.. .|...|..+...
T Consensus       193 VGS~Nl~p-~~----------------------------------~~E~g~vi~~p~~a~~l~~~~~~~~W~~s~~~  234 (246)
T d1v0wa2         193 IGSKNLYP-SW----------------------------------LQDFGYIVESPEAAKQLDAKLLDPQWKYSQET  234 (246)
T ss_dssp             EESCCSSC-CC----------------------------------SBCEEEEEECHHHHHHHHHHTHHHHHHHHGGG
T ss_pred             EcCCcCCc-ch----------------------------------hccCcEEEeCHHHHHHHHHHHHHHHHHhcccc
Confidence            99999976 33                                  3699999999955 46655 789999876544

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1.3e-14  Score=132.56  Aligned_cols=108  Identities=29%  Similarity=0.451  Sum_probs=88.0

Q ss_pred             ceEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCCCcccccccccccCCCCCCcEEEEEECC----e
Q 006854           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (628)
Q Consensus        16 ~g~L~v~I~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~   91 (628)
                      .|.|.|+|++|+||+..+..+.                                          +||||++.+.+    .
T Consensus        19 ~~~L~V~V~~a~nL~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~   56 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDLTGF------------------------------------------SDPYVKASLISEGRRL   56 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEECCCTTCCTT
T ss_pred             CCEEEEEEEEEeCCCCcCCCCC------------------------------------------cCceEEEEEccCCccc
Confidence            4889999999999998766554                                          89999999865    2


Q ss_pred             eeeeeccccCCCCCeEeeEEEEEecCC---CceEEEEEEEcCCCC-CeeeEEEeccccccccCceeEEEEEccCCCCCC
Q 006854           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (628)
Q Consensus        92 ~~~kT~v~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  166 (628)
                      ...+|++++++.||.|||.|.|.++..   ...|.|.|||.+.++ +++||.+.|++..+... ...+|++|....+++
T Consensus        57 ~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~~~p~~~  134 (145)
T d1dqva2          57 KKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEMLANPRKP  134 (145)
T ss_dssp             SCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTSSSSSSSC
T ss_pred             eeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCch-hhHHHHHHHhCCCCe
Confidence            246899999999999999999988763   456899999999988 89999999999876532 346788886555543

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3.9e-13  Score=119.53  Aligned_cols=91  Identities=14%  Similarity=0.278  Sum_probs=76.7

Q ss_pred             CCCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEEecCCCceEEEEEEEcCCCCCeeeEEEeccccccc-----c
Q 006854           79 TSDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----T  149 (628)
Q Consensus        79 ~~dpyv~v~l~~----~~~~kT~v~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~-----~  149 (628)
                      ++||||+|.+.+    .+..+|+++++|.||+|||+|.|.+.. ...|.|.|||+|   ++++|.+.+++..+.     .
T Consensus        23 ~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d---d~~~g~~~i~l~~l~~~~~~~   98 (123)
T d1bdya_          23 ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA---EDPMSEVTVGVSVLAERCKKN   98 (123)
T ss_dssp             SCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET---TEEEEEEEEEHHHHHHHHHTT
T ss_pred             CCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc---ccccCccEEehhheeeccccC
Confidence            499999999955    234579999999999999999999976 567999999986   689999999998875     3


Q ss_pred             CceeEEEEEccCCCCCCCCCCceEEEEEEEee
Q 006854          150 GELISRWYDIIAPSGSPPKPGASIQLELKFTP  181 (628)
Q Consensus       150 ~~~~~~w~~L~~~~~~~~~~~g~i~l~l~y~p  181 (628)
                      +...+.|++|.        +.|+|+|+++|.+
T Consensus        99 ~~~~~~W~~L~--------~~Gkl~l~v~~f~  122 (123)
T d1bdya_          99 NGKAEFWLDLQ--------PQAKVLMCVQYFL  122 (123)
T ss_dssp             TTEEEEEEECB--------SSCEEEEEEEEEE
T ss_pred             CCcccEEEeCC--------CCEEEEEEEEEec
Confidence            56778999992        3499999999875

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3e-11  Score=106.93  Aligned_cols=93  Identities=25%  Similarity=0.437  Sum_probs=65.7

Q ss_pred             CCcEEEEEECC-----eeeeeecc--ccCCCCCeEeeE-EEE-EecCC-CceEEEEEEEcCCCCCeeeEEEecccccccc
Q 006854           80 SDPYVTVVVPQ-----ATVARTRV--LKNSQEPVWNEH-FNI-PLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT  149 (628)
Q Consensus        80 ~dpyv~v~l~~-----~~~~kT~v--~~~~~~P~wne~-f~~-~~~~~-~~~l~i~v~d~d~~~~~~iG~~~i~l~~l~~  149 (628)
                      .||||+|.+-+     ....+|++  ..++.||.|||+ |.+ .+..+ ...|.|.|||++   +++||++.+|++.+..
T Consensus        18 ~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d---~~~lG~~~ipl~~l~~   94 (122)
T d2zkmx2          18 VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNS   94 (122)
T ss_dssp             CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCC
T ss_pred             CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC---CCEEEEEEEEcccCcC
Confidence            89999999832     23334444  466899999976 444 34443 457899999976   7999999999999987


Q ss_pred             CceeEEEEEccCCCCCCCCCCceEEEEEEE
Q 006854          150 GELISRWYDIIAPSGSPPKPGASIQLELKF  179 (628)
Q Consensus       150 ~~~~~~w~~L~~~~~~~~~~~g~i~l~l~y  179 (628)
                      |   -+|++|.+..|++. ..+.|.+.+..
T Consensus        95 G---yR~vpL~~~~g~~l-~~~~L~v~i~~  120 (122)
T d2zkmx2          95 G---YHHLCLHSESNMPL-TMPALFIFLEM  120 (122)
T ss_dssp             E---EEEEEEECTTCCEE-EEEEEEEEEEE
T ss_pred             C---ceEEEccCCCcCCC-CCceEEEEEEE
Confidence            7   47889987766532 23455555543

>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Phospholipase D
domain: Phospholipase D
species: Streptomyces sp. [TaxId: 1931]

Probab=97.57  E-value=5.2e-05  Score=74.38  Aligned_cols=56  Identities=9%  Similarity=0.066  Sum_probs=48.6

Q ss_pred             hhHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEEEe
Q 006854          559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARRC  627 (628)
Q Consensus       559 e~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~~  627 (628)
                      .+.+..+++.+|.+||++|||+++||.|+.             .+..+|+++|.+|+++|++++|.|++
T Consensus        62 ~~~~~~~~~~~I~~A~~~I~i~~~~~~pd~-------------~~~~~i~~aL~~aA~rG~~V~VriL~  117 (258)
T d1v0wa1          62 TKRLLAKMTENIGNATRTVDISTLAPFPNG-------------AFQDAIVAGLKESAAKGNKLKVRILV  117 (258)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEEEEESSCCCH-------------HHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             hHHHHHHHHHHHHHhccEEEEEEEEEcCCc-------------hHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence            467899999999999999999999987752             46779999999999999888887764

>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Phospholipase D
domain: Phospholipase D
species: Streptomyces sp. [TaxId: 1931]

Probab=97.40  E-value=9.4e-05  Score=71.96  Aligned_cols=58  Identities=17%  Similarity=0.135  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEEE
Q 006854          560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVARR  626 (628)
Q Consensus       560 ~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i~  626 (628)
                      ...+.+++.+|.+|+++|||++|||.++..   ++      +.....|+++|.+|.++|+++||+|-
T Consensus        53 ~~~e~a~~~lI~~A~~~I~I~~q~~~~~~~---p~------~~~~~~l~~AL~~aa~RGV~Vrvll~  110 (246)
T d1v0wa2          53 NPEESALRALVASAKGHIEISQQDLNATCP---PL------PRYDIRLYDALAAKMAAGVKVRIVVS  110 (246)
T ss_dssp             CHHHHHHHHHHHTCSSEEEEEESCSSCCTT---TS------CSCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             ChHHHHHHHHHHhcCcEEEEEEEeecccCC---cc------ccccHHHHHHHHHHHHcCCcEEEEEe
Confidence            446789999999999999999999987631   11      22345799999999999999999973

>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Nuclease
domain: Nuclease Nuc
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.24  E-value=0.0002  Score=63.60  Aligned_cols=48  Identities=15%  Similarity=0.152  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHhccceEEEeecccccccCCCCCccCCCCCChhHHHHHHHHHHHHHcCCceEEEE
Q 006854          560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVAR  625 (628)
Q Consensus       560 ~~I~~ay~~aI~~Ak~~IyIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~v~i  625 (628)
                      .++.++++++|.+|++.|+|+.++|.++                  +|+++|.+|.++|.++||++
T Consensus        12 ~~~~~~i~~~I~~A~~~I~I~~~~~~~~------------------~i~~aL~~a~~rGV~Vril~   59 (152)
T d1byra_          12 GSARVLVLSAIDSAKTSIRMMAYSFTAP------------------DIMKALVAAKKRGVDVKIVI   59 (152)
T ss_dssp             THHHHHHHHHHHHCSSEEEEEESSBCCH------------------HHHHHHHHHHHTTCEEEEEE
T ss_pred             ccHHHHHHHHHHhCCcEEEEEEEeecCH------------------HHHHHHHHHHhcCCeEEEEE
Confidence            3678899999999999999999999765                  69999999999999999986

>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Polyphosphate kinase C-terminal domain
domain: Polyphosphate kinase, PPK
species: Porphyromonas gingivalis [TaxId: 837]

Probab=97.04  E-value=0.0058  Score=55.43  Aligned_cols=138  Identities=14%  Similarity=0.174  Sum_probs=91.7

Q ss_pred             chHHHHHHHHHhcc-----ceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccc
Q 006854          242 TCWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG  316 (628)
Q Consensus       242 ~~f~~l~~aI~~Ak-----~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~  316 (628)
                      +.|..+.+-+++|-     .+|-++-|...                ....|.++|++||+.|-+|-+++  ..-..    
T Consensus        33 ~sF~~vv~fl~eAA~DP~V~~Ik~TlYR~a----------------~~S~Ii~aLi~AA~nGK~Vtv~v--ELkAR----   90 (188)
T d2o8ra3          33 YTYDYVVRLLMEAAISPDVSEIRLTQYRVA----------------ENSSIISALEAAAQSGKKVSVFV--ELKAR----   90 (188)
T ss_dssp             BCSHHHHHHHHHHHTCTTEEEEEEEESCCC----------------SCCHHHHHHHHHHHTTCEEEEEE--CCCSC----
T ss_pred             cccHHHHHHHHHHhcCCCccEEEEEEEEec----------------CCchHHHHHHHHHHcCCEEEEEE--echhh----
Confidence            45677888888874     67777766432                13689999999999999999998  33111    


Q ss_pred             ccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecC-CCCCCcceEEEEccccCCC
Q 006854          317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ-ASGNNRKITAFIGGIDLCD  395 (628)
Q Consensus       317 ~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~-~~~~~~~~vafvGG~ni~~  395 (628)
                           +-++..-++.+.|+++||+|.+  ..+              .+.-|-|+++|--+ .+|..-...+.+|-=|...
T Consensus        91 -----FDEe~NI~wa~~Le~aGv~Viy--G~~--------------glKvHaK~~lI~R~e~~g~~~~~Y~hlgTGNyn~  149 (188)
T d2o8ra3          91 -----FDEENNLRLSERMRRSGIRIVY--SMP--------------GLKVHAKTALILYHTPAGERPQGIALLSTGNFNE  149 (188)
T ss_dssp             -----C----CHHHHHHHHHHTCEEEE--CCT--------------TCCBCCCEEEEEECCCSSSCCCEEEEEESSCSSC
T ss_pred             -----hhHHHHHHHhhhHHhcCeEEee--Ccc--------------chhhcceeeEEEEEEcCccccccEEEeCCCCcCc
Confidence                 1122234578889999999985  222              23459999999654 2222223477777544444


Q ss_pred             CCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHH
Q 006854          396 GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQ  454 (628)
Q Consensus       396 ~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~  454 (628)
                                                      .-..-+-|..+.-.-| ...|+...|..
T Consensus       150 --------------------------------~TAr~YtD~~l~Ta~~~i~~Dv~~~F~~  177 (188)
T d2o8ra3         150 --------------------------------TTARIYSDTTLMTANTDIVHDVYRLFRI  177 (188)
T ss_dssp             --------------------------------CCSSCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             --------------------------------cchhheeeeeeecCCHHHHHHHHHHHHH
Confidence                                            1123577998887776 78889888853

>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Polyphosphate kinase C-terminal domain
domain: Polyphosphate kinase, PPK
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.0062  Score=55.11  Aligned_cols=137  Identities=15%  Similarity=0.182  Sum_probs=90.6

Q ss_pred             chHHHHHHHHHhcc-----ceEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccc
Q 006854          242 TCWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG  316 (628)
Q Consensus       242 ~~f~~l~~aI~~Ak-----~sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~  316 (628)
                      +.|..+.+-+++|-     .+|.++-|..         .       ....+.++|++||+.|-+|-+++  ..-..    
T Consensus        34 ~sF~~vv~fl~eAA~DP~V~~Ik~TlYR~---------a-------~~S~Ii~aLi~Aa~nGK~Vtv~v--ELkAR----   91 (187)
T d1xdpa3          34 HTFEHVLELLRQASFDPSVLAIKINIYRV---------A-------KDSRIIDSMIHAAHNGKKVTVVV--ELQAR----   91 (187)
T ss_dssp             BCTHHHHHHHHHHHHCTTEEEEEEEESSC---------C-------TTCHHHHHHHHHHHTTCEEEEEE--CTTCS----
T ss_pred             hhhhHHHHHHHHHhcCCCccEEEEEEEEe---------c-------CCccHHHHHHHHHHcCCEEEEEE--echhc----
Confidence            45778888888873     6777776743         2       13689999999999999999998  33111    


Q ss_pred             ccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854          317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG  396 (628)
Q Consensus       317 ~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~  396 (628)
                           +-++..-++.+.|+++||+|.+  ..++              +.-|-|+++|--+.++ .-+..+++|-=|... 
T Consensus        92 -----FDEe~NI~wa~~Le~aGv~Viy--G~~g--------------lKvHaK~~lV~R~e~~-~~~~Y~higTGNyn~-  148 (187)
T d1xdpa3          92 -----FDEEANIHWAKRLTEAGVHVIF--SAPG--------------LKIHAKLFLISRKENG-EVVRYAHIGTGNFNE-  148 (187)
T ss_dssp             -----STTTTTTTTTHHHHHHTCEEEE--CCTT--------------CEECCEEEEEEEEETT-EEEEEEEEESSCSCT-
T ss_pred             -----ccHHHHHHHHHHHHHCCCEEEc--Cccc--------------ceeeeEEEEEEEEcCC-cEEEEEEecCCCcCc-
Confidence                 1112233466789999999985  2222              3449999999655221 123356666544443 


Q ss_pred             CCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCH-HHHHHHHHHHH
Q 006854          397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQ  454 (628)
Q Consensus       397 r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gp-av~~l~~~F~~  454 (628)
                                                     ....-+-|..+.-.-| ...|+...|..
T Consensus       149 -------------------------------~TAriYtD~~l~T~~~~i~~D~~~~F~~  176 (187)
T d1xdpa3         149 -------------------------------KTARLYTDYSLLTADARITNEVRRVFNF  176 (187)
T ss_dssp             -------------------------------TGGGTEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             -------------------------------cchhheeeeeeecCCHHHHHHHHHHHHH
Confidence                                           1123567998888876 78888888853

>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Polyphosphate kinase C-terminal domain
domain: Polyphosphate kinase, PPK
species: Porphyromonas gingivalis [TaxId: 837]

Probab=90.64  E-value=0.27  Score=44.50  Aligned_cols=133  Identities=17%  Similarity=0.171  Sum_probs=84.3

Q ss_pred             cchHHHHHHHHHhccc----eEEEEEEEEecccceeccCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccc
Q 006854          241 GTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG  316 (628)
Q Consensus       241 ~~~f~~l~~aI~~Ak~----sI~i~~w~f~~~~~l~r~~~~~~~~g~~~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~  316 (628)
                      ..+.+.+-+.|++|+.    .|.+-.-      .|.           ...+.++|-+|+++||+|.++| .+.-+.. ++
T Consensus        11 ~~l~~~I~~Ei~~a~~G~~~~I~~KmN------sL~-----------D~~iI~~Ly~AS~aGV~I~LiV-RGic~L~-pg   71 (186)
T d2o8ra4          11 EAITNLIEREIENVKRGKRGYMLLKMN------GLQ-----------DKNVITQLYRASEAGVEIDLIV-RGICCLV-PD   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCEEEEEES------CBC-----------CHHHHHHHHHHHHTTCEEEEEE-SSCBCSC-CS
T ss_pred             HHHHHHHHHHHHHHHCCCCcEEEEeec------ccc-----------CHHHHHHHHHHhcCCCeEEEEE-Cchheec-CC
Confidence            3456666677777652    5544321      122           2689999999999999999998 7775432 21


Q ss_pred             ccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccccCcceEEEEecCCCCCCcceEEEEccccCCCC
Q 006854          317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG  396 (628)
Q Consensus       317 ~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~  396 (628)
                      ..               - ..+|+|.   ..-++   ||+          |-++..+-..     .+...|+|+.|+-..
T Consensus        72 v~---------------g-senI~V~---SivgR---fLE----------HsRiy~F~n~-----g~~~~yigSAD~M~R  114 (186)
T d2o8ra4          72 MP---------------Q-SRNIRVT---RLVDM---YLE----------HSRIWCFHNG-----GKEEVFISSADWMKR  114 (186)
T ss_dssp             SG---------------G-GTTEEEE---ECCSS---SEE----------CCCEEEECGG-----GSCEEEEESCCBCHH
T ss_pred             CC---------------C-CCcEEEE---Eeecc---ccc----------cceEEEEEcC-----CceEEEEeccchhhh
Confidence            11               1 2467776   22222   333          8888888332     114789999998872


Q ss_pred             CCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHH-HHHHHHHHHHHHhhhcc
Q 006854          397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRWRKATK  461 (628)
Q Consensus       397 r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpa-v~~l~~~F~~rW~~~~~  461 (628)
                      -.|                                .-..+.+-|.-|. -++|...|...|.+..+
T Consensus       115 NLd--------------------------------rRVEv~~PI~d~~~k~~l~~iL~~~l~Dn~k  148 (186)
T d2o8ra4         115 NLY--------------------------------NRIETACPVLDPTLRREIIDILEIQLRDNIK  148 (186)
T ss_dssp             HHH--------------------------------TSBCEEEECCSHHHHHHHHHHHHHHHHCCSS
T ss_pred             hhh--------------------------------cceeEEEEeCCHHHHHHHHHHHHHHccccHh
Confidence            111                                1147888888884 45677788888876543

>d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Polyphosphate kinase C-terminal domain
domain: Polyphosphate kinase, PPK
species: Escherichia coli [TaxId: 562]

Probab=86.44  E-value=0.53  Score=42.50  Aligned_cols=107  Identities=19%  Similarity=0.238  Sum_probs=69.6

Q ss_pred             CcHHHHHHHHhhcCCEEEEEEecCCCccCcccccCCCcccCChHHHHhhhccCCceEEeccCCCCCccchhhhccccccc
Q 006854          285 LTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIF  364 (628)
Q Consensus       285 ~~l~~~L~~aA~rGV~VrILvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~  364 (628)
                      ..+.++|-+|++.||+|.+++ .+.-+.. ++.  +|+             ..+|.|.   ...++   ||+        
T Consensus        42 ~~~I~~Ly~AS~aGV~I~LiV-RGiC~L~-pgi--~g~-------------SenI~V~---SivgR---fLE--------   90 (187)
T d1xdpa4          42 KGLVDRLYAASSSGVPVNLLV-RGMCSLI-PNL--EGI-------------SDNIRAI---SIVDR---YLE--------   90 (187)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEE-SSCBCBC-TTC--TTT-------------STTEEEE---EECSS---SEE--------
T ss_pred             HHHHHHHHHHHcCCCeEEEEE-cccceec-ccc--CCC-------------cCcEEEE---Eeccc---hhc--------
Confidence            689999999999999999998 7664432 211  111             2456665   22222   333        


Q ss_pred             cCcceEEEEecCCCCCCcceEEEEccccCCCCCCCCCCCCCccCCcccccCCCCCCCCCCCCCCCCCCceeeeeeEeCHH
Q 006854          365 THHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA  444 (628)
Q Consensus       365 r~HqK~vVVDg~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~~~~n~~~~~~~~~~~~pWhD~~~~l~Gpa  444 (628)
                        |..+..+-..     ++...|+|+.|+-..-.+                                .-..+.+-|+-|.
T Consensus        91 --HsRi~~F~n~-----g~~~~yi~SADwM~RNL~--------------------------------rRVEv~~PI~d~~  131 (187)
T d1xdpa4          91 --HDRVYIFENG-----GDKKVYLSSADWMTRNID--------------------------------YRIEVATPLLDPR  131 (187)
T ss_dssp             --CCCEEEECGG-----GSCEEEEESCCBSHHHHH--------------------------------SEEEEEEECCSHH
T ss_pred             --cCcEEEEecC-----CCcceeecCcchhhHHHh--------------------------------hhhheeeEeCCHH
Confidence              8888888221     123899999998872111                                1258899999985


Q ss_pred             H-HHHHHHHHHHHhhhcc
Q 006854          445 A-YDVLINFEQRWRKATK  461 (628)
Q Consensus       445 v-~~l~~~F~~rW~~~~~  461 (628)
                      + +.|...|...|....+
T Consensus       132 ~k~~i~~il~~~L~Dn~k  149 (187)
T d1xdpa4         132 LKQRVLDIIDILFSDTVK  149 (187)
T ss_dssp             HHHHHHHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHHHhhhhHH
Confidence            4 5677788888866443