Citrus Sinensis ID: 006863

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccccccccccHHHHHHHccHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHccccccEEEEcccHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcEEEEEccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHccccEEEccccccccccccHHHHHHHHHHccEEEEEEEccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccEEccccccccccccccccccccccccccccccEEccccccccccEEEEEEEEEcccccccEEEEEEEEccccccccccEEccccEEEEccccEEEEEEEEcccccEEEEcccccEEEcccEEEEEEccccccEEEEEEEEEEEc
cccccccccEEEccccEEccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEHHEEEccccccccccccccccEEcHHHHHHHcccHHHHHHHccccEEEEHHHHccccccccccHHHHHHHHHHHccccEEEEEcHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccHHHHHHHHHHHHccEEEEEccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHEcccccccccccHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccEEHHHHcccccccHEEEEcccccHHHHHHHHHHHcccccccccccccccHHHccccccccccccccccccccEEEEccccEEEccccccEEEEEEEEccccccccEEccccccccccccccccccEEcccHHcccccEEEEEEEEEEcccccccEEEEEEEcccccccccHHHHccEEEEEEccccEEEEEEEEccHHHHHHEcccccEEEccccEEEEEccccccEEEEEEEEEEEc
mynggmagltywspnvnifrdprwgrgqetpgedpvltgkYAASYVrglqgntgsrlKVAACCKHytaydldnwngvdryhfnarvskqdledtynvpfkACVVEGKVASVMCSynqvngkptcadpdilkntihgqwrldgyivsdcdsvgvlyntqhytrtpeEAAADAIKAgldldcgpflaihtegavrggllrEEDVNLALAYTITVQMRlgmfdgepsaqpfgnlgprdvctpAHQQLALQAAHQGIVLLKNsartlplstlrhhtvavigpnsdvTVTMIGNYAgvacgyttplqgISRYAKTIHQAgcfgvacngnqLIGAAEVAARQADATVLVMGLDQSIEAEFIDRaglllpgrQQELVSRVAKASRGPVVLVLMCggpvdvsfakndprigailwvgypgqaggAAIADVLFgranpggklpmtwypqdyvsrlpmtdmrmraargypgrtyrfykgpvvfpfghgmsytTFAHTlskapnqfsvpiatslyafknttisSNAIRVAHTNCNDAMSLGLHvdikntgdmagtHTLLvfakppagnwspnkqligfkKVHVTAGALQSVRLDIHVckhlsvvdkfgirripmgehslhigdlkHSISLQANLEGIKF
MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGlqgntgsrLKVAACCKHYTAYDLDNWNGVDRYHFNARVskqdledtynVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTvavigpnsdVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGehslhigdlkhsislqanlegikf
MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPahqqlalqaahqGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
*****MAGLTYWSPNVNIFRDPRWGR********PVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGE****PFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSI***********
*YNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
*YNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSI***FIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
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MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query628 2.2.26 [Sep-21-2011]
Q9FGY1774 Beta-D-xylosidase 1 OS=Ar yes no 0.988 0.802 0.746 0.0
Q94KD8768 Probable beta-D-xylosidas no no 0.987 0.807 0.699 0.0
Q9FLG1784 Beta-D-xylosidase 4 OS=Ar no no 0.979 0.784 0.595 0.0
A5JTQ2774 Beta-xylosidase/alpha-L-a N/A no 0.979 0.794 0.579 0.0
A5JTQ3774 Beta-xylosidase/alpha-L-a N/A no 0.977 0.793 0.578 0.0
Q9LXD6773 Beta-D-xylosidase 3 OS=Ar no no 0.977 0.794 0.571 0.0
P83344461 Putative beta-D-xylosidas N/A no 0.729 0.993 0.757 0.0
Q9LJN4781 Probable beta-D-xylosidas no no 0.961 0.773 0.536 0.0
Q9SGZ5767 Probable beta-D-xylosidas no no 0.958 0.784 0.488 0.0
Q9LXA8792 Probable beta-D-xylosidas no no 0.984 0.780 0.453 1e-173
>sp|Q9FGY1|BXL1_ARATH Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/628 (74%), Positives = 535/628 (85%), Gaps = 7/628 (1%)

Query: 1   MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT-GSRLKV 59
           MYNGG+AGLTYWSPNVNI RDPRWGRGQETPGEDP++  KYAASYVRGLQG   G+RLKV
Sbjct: 149 MYNGGVAGLTYWSPNVNILRDPRWGRGQETPGEDPIVAAKYAASYVRGLQGTAAGNRLKV 208

Query: 60  AACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVN 119
           AACCKHYTAYDLDNWNGVDR+HFNA+V++QDLEDTYNVPFK+CV EGKVASVMCSYNQVN
Sbjct: 209 AACCKHYTAYDLDNWNGVDRFHFNAKVTQQDLEDTYNVPFKSCVYEGKVASVMCSYNQVN 268

Query: 120 GKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLD 179
           GKPTCAD ++LKNTI GQWRL+GYIVSDCDSV V +N QHYT TPEEAAA +IKAGLDLD
Sbjct: 269 GKPTCADENLLKNTIRGQWRLNGYIVSDCDSVDVFFNQQHYTSTPEEAAARSIKAGLDLD 328

Query: 180 CGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTP 239
           CGPFLAI TEGAV+ GLL E D+NLALA T+TVQMRLGMFDG  +  P+ NLGPRDVCTP
Sbjct: 329 CGPFLAIFTEGAVKKGLLTENDINLALANTLTVQMRLGMFDG--NLGPYANLGPRDVCTP 386

Query: 240 AHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTT 299
           AH+ LAL+AAHQGIVLLKNSAR+LPLS  RH TVAVIGPNSDVT TMIGNYAG AC YT+
Sbjct: 387 AHKHLALEAAHQGIVLLKNSARSLPLSPRRHRTVAVIGPNSDVTETMIGNYAGKACAYTS 446

Query: 300 PLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAG 359
           PLQGISRYA+T+HQAGC GVAC GNQ  GAAE AAR+ADATVLVMGLDQSIEAE  DR G
Sbjct: 447 PLQGISRYARTLHQAGCAGVACKGNQGFGAAEAAAREADATVLVMGLDQSIEAETRDRTG 506

Query: 360 LLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAI 419
           LLLPG QQ+LV+RVA+ASRGPV+LVLM GGP+DV+FAKNDPR+ AI+W GYPGQAGGAAI
Sbjct: 507 LLLPGYQQDLVTRVAQASRGPVILVLMSGGPIDVTFAKNDPRVAAIIWAGYPGQAGGAAI 566

Query: 420 ADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGM 479
           A+++FG ANPGGKLPMTWYPQDYV+++PMT M MRA+  YPGRTYRFYKGPVVFPFG G+
Sbjct: 567 ANIIFGAANPGGKLPMTWYPQDYVAKVPMTVMAMRASGNYPGRTYRFYKGPVVFPFGFGL 626

Query: 480 SYTTFAHTLSKAP-NQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNT 538
           SYTTF H+L+K+P  Q SV ++    A      SS++I+V+HTNCN    + LHV++ NT
Sbjct: 627 SYTTFTHSLAKSPLAQLSVSLSNLNSANTILNSSSHSIKVSHTNCNSFPKMPLHVEVSNT 686

Query: 539 GDMAGTHTLLVFAKPPAG---NWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 595
           G+  GTHT+ VFA+PP         NKQLI F+KVHV AGA Q+V++D+  CKHL VVD+
Sbjct: 687 GEFDGTHTVFVFAEPPINGIKGLGVNKQLIAFEKVHVMAGAKQTVQVDVDACKHLGVVDE 746

Query: 596 FGIRRIPMGEHSLHIGDLKHSISLQANL 623
           +G RRIPMGEH LHIGDLKH+I +Q  L
Sbjct: 747 YGKRRIPMGEHKLHIGDLKHTILVQPQL 774
Involved in pectic arabinan modification in mucilage secretory cells. Acts also as a beta-D-xylosidase during the remodeling of xylans in vascular development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 5
>sp|Q94KD8|BXL2_ARATH Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FLG1|BXL4_ARATH Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1 Back     alignment and function description
>sp|A5JTQ2|XYL1_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment) OS=Medicago sativa subsp. varia GN=Xyl1 PE=1 SV=1 Back     alignment and function description
>sp|A5JTQ3|XYL2_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXD6|BXL3_ARATH Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1 Back     alignment and function description
>sp|P83344|XYNB_PRUPE Putative beta-D-xylosidase (Fragment) OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|Q9LJN4|BXL5_ARATH Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2 Back     alignment and function description
>sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2 Back     alignment and function description
>sp|Q9LXA8|BXL6_ARATH Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query628
183579871 769 arabinofuranosidase [Citrus unshiu] 0.977 0.798 0.962 0.0
224111912 768 predicted protein [Populus trichocarpa] 0.992 0.811 0.825 0.0
224099193 755 predicted protein [Populus trichocarpa] 0.987 0.821 0.816 0.0
255556320 782 Periplasmic beta-glucosidase precursor, 0.992 0.796 0.8 0.0
408354266 775 alpha-L-arabinofuranosidase/beta-D-xylos 0.996 0.807 0.792 0.0
408354264 775 alpha-L-arabinofuranosidase/beta-D-xylos 0.996 0.807 0.792 0.0
298364130 774 alpha-L-arabinofuranosidase/beta-D-xylos 0.996 0.808 0.770 0.0
157041199 774 beta-D-xylosidase [Pyrus pyrifolia] 0.996 0.808 0.776 0.0
86553064 772 beta xylosidase [Fragaria x ananassa] 0.995 0.809 0.785 0.0
65736613 774 alpha-L-arabinofuranosidase / beta-D-xyl 0.996 0.808 0.775 0.0
>gi|183579871|dbj|BAG28345.1| arabinofuranosidase [Citrus unshiu] Back     alignment and taxonomy information
 Score = 1239 bits (3206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/621 (96%), Positives = 603/621 (97%), Gaps = 7/621 (1%)

Query: 1   MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVA 60
           MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVL GKYAASYVR LQGNTGSRLKVA
Sbjct: 142 MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGKYAASYVRRLQGNTGSRLKVA 201

Query: 61  ACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNG 120
           ACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNG
Sbjct: 202 ACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNG 261

Query: 121 KPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDC 180
           KPTCADPDILKNTI GQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDC
Sbjct: 262 KPTCADPDILKNTIRGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDC 321

Query: 181 GPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPA 240
           GPFLAIHTEGAVRGGLLREEDVNLA AYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPA
Sbjct: 322 GPFLAIHTEGAVRGGLLREEDVNLASAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPA 381

Query: 241 HQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP 300
           HQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP
Sbjct: 382 HQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP 441

Query: 301 LQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGL 360
           LQGISRYAKTIHQAGC GVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGL
Sbjct: 442 LQGISRYAKTIHQAGCLGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGL 501

Query: 361 LLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIA 420
           LLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIA
Sbjct: 502 LLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIA 561

Query: 421 DVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMS 480
           DVLFGRANPGGKLPMTWYPQDYV+RLPMTDMRMRA RGYPGRTYRFYKGPVVFPFGHGMS
Sbjct: 562 DVLFGRANPGGKLPMTWYPQDYVARLPMTDMRMRAGRGYPGRTYRFYKGPVVFPFGHGMS 621

Query: 481 YTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD 540
           YTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVD+KNTGD
Sbjct: 622 YTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDVKNTGD 681

Query: 541 MAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRR 600
           MAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRR
Sbjct: 682 MAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRR 741

Query: 601 IP-------MGEHSLHIGDLK 614
           IP       +G  S+H+   K
Sbjct: 742 IPWVNIVSILGISSIHLSSSK 762

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111912|ref|XP_002316021.1| predicted protein [Populus trichocarpa] gi|222865061|gb|EEF02192.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224099193|ref|XP_002311398.1| predicted protein [Populus trichocarpa] gi|222851218|gb|EEE88765.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556320|ref|XP_002519194.1| Periplasmic beta-glucosidase precursor, putative [Ricinus communis] gi|223541509|gb|EEF43058.1| Periplasmic beta-glucosidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|408354266|gb|AFU54452.1| alpha-L-arabinofuranosidase/beta-D-xylosidase [Prunus salicina] Back     alignment and taxonomy information
>gi|408354264|gb|AFU54451.1| alpha-L-arabinofuranosidase/beta-D-xylosidase [Prunus salicina] Back     alignment and taxonomy information
>gi|298364130|gb|ADI79208.1| alpha-L-arabinofuranosidase/beta-D-xylosidase [Malus x domestica] Back     alignment and taxonomy information
>gi|157041199|dbj|BAF79669.1| beta-D-xylosidase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|86553064|gb|AAS17751.2| beta xylosidase [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|65736613|dbj|BAD98523.1| alpha-L-arabinofuranosidase / beta-D-xylosidase [Pyrus pyrifolia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query628
TAIR|locus:2157994774 BXL1 "beta-xylosidase 1" [Arab 0.988 0.802 0.732 5.2e-255
TAIR|locus:2196060768 BXL2 "beta-xylosidase 2" [Arab 0.987 0.807 0.687 1.7e-242
TAIR|locus:2174809784 XYL4 "beta-D-xylosidase 4" [Ar 0.979 0.784 0.585 8.7e-198
TAIR|locus:2144756773 BXL3 "AT5G09730" [Arabidopsis 0.977 0.794 0.565 6.9e-189
UNIPROTKB|P83344461 P83344 "Putative beta-D-xylosi 0.729 0.993 0.735 5.2e-184
TAIR|locus:2091236781 AT3G19620 [Arabidopsis thalian 0.961 0.773 0.529 1.2e-175
TAIR|locus:2029391767 AT1G78060 [Arabidopsis thalian 0.958 0.784 0.475 2e-166
TAIR|locus:2142434792 AT5G10560 [Arabidopsis thalian 0.896 0.710 0.443 4.3e-156
ASPGD|ASPL0000029139763 bxlB [Emericella nidulans (tax 0.818 0.673 0.418 4.3e-111
UNIPROTKB|Q5ATH9763 bxlB "Exo-1,4-beta-xylosidase 0.818 0.673 0.418 4.3e-111
TAIR|locus:2157994 BXL1 "beta-xylosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2455 (869.3 bits), Expect = 5.2e-255, P = 5.2e-255
 Identities = 460/628 (73%), Positives = 524/628 (83%)

Query:     1 MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT-GSRLKV 59
             MYNGG+AGLTYWSPNVNI RDPRWGRGQETPGEDP++  KYAASYVRGLQG   G+RLKV
Sbjct:   149 MYNGGVAGLTYWSPNVNILRDPRWGRGQETPGEDPIVAAKYAASYVRGLQGTAAGNRLKV 208

Query:    60 AACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVN 119
             AACCKHYTAYDLDNWNGVDR+HFNA+V++QDLEDTYNVPFK+CV EGKVASVMCSYNQVN
Sbjct:   209 AACCKHYTAYDLDNWNGVDRFHFNAKVTQQDLEDTYNVPFKSCVYEGKVASVMCSYNQVN 268

Query:   120 GKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLD 179
             GKPTCAD ++LKNTI GQWRL+GYIVSDCDSV V +N QHYT TPEEAAA +IKAGLDLD
Sbjct:   269 GKPTCADENLLKNTIRGQWRLNGYIVSDCDSVDVFFNQQHYTSTPEEAAARSIKAGLDLD 328

Query:   180 CGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTP 239
             CGPFLAI TEGAV+ GLL E D+NLALA T+TVQMRLGMFDG  +  P+ NLGPRDVCTP
Sbjct:   329 CGPFLAIFTEGAVKKGLLTENDINLALANTLTVQMRLGMFDG--NLGPYANLGPRDVCTP 386

Query:   240 XXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTT 299
                         GIVLLKNSAR+LPLS  RH TVAVIGPNSDVT TMIGNYAG AC YT+
Sbjct:   387 AHKHLALEAAHQGIVLLKNSARSLPLSPRRHRTVAVIGPNSDVTETMIGNYAGKACAYTS 446

Query:   300 PLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAG 359
             PLQGISRYA+T+HQAGC GVAC GNQ  GAAE AAR+ADATVLVMGLDQSIEAE  DR G
Sbjct:   447 PLQGISRYARTLHQAGCAGVACKGNQGFGAAEAAAREADATVLVMGLDQSIEAETRDRTG 506

Query:   360 LLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAI 419
             LLLPG QQ+LV+RVA+ASRGPV+LVLM GGP+DV+FAKNDPR+ AI+W GYPGQAGGAAI
Sbjct:   507 LLLPGYQQDLVTRVAQASRGPVILVLMSGGPIDVTFAKNDPRVAAIIWAGYPGQAGGAAI 566

Query:   420 ADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGM 479
             A+++FG ANPGGKLPMTWYPQDYV+++PMT M MRA+  YPGRTYRFYKGPVVFPFG G+
Sbjct:   567 ANIIFGAANPGGKLPMTWYPQDYVAKVPMTVMAMRASGNYPGRTYRFYKGPVVFPFGFGL 626

Query:   480 SYTTFAHTLSKAP-NQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNT 538
             SYTTF H+L+K+P  Q SV ++    A      SS++I+V+HTNCN    + LHV++ NT
Sbjct:   627 SYTTFTHSLAKSPLAQLSVSLSNLNSANTILNSSSHSIKVSHTNCNSFPKMPLHVEVSNT 686

Query:   539 GDMAGTHTLLVFAKPPAGN---WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 595
             G+  GTHT+ VFA+PP         NKQLI F+KVHV AGA Q+V++D+  CKHL VVD+
Sbjct:   687 GEFDGTHTVFVFAEPPINGIKGLGVNKQLIAFEKVHVMAGAKQTVQVDVDACKHLGVVDE 746

Query:   596 FGIRRIPMGEHSLHIGDLKHSISLQANL 623
             +G RRIPMGEH LHIGDLKH+I +Q  L
Sbjct:   747 YGKRRIPMGEHKLHIGDLKHTILVQPQL 774
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0010214 "seed coat development" evidence=IMP
GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=IDA
TAIR|locus:2196060 BXL2 "beta-xylosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174809 XYL4 "beta-D-xylosidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144756 BXL3 "AT5G09730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P83344 P83344 "Putative beta-D-xylosidase" [Prunus persica (taxid:3760)] Back     alignment and assigned GO terms
TAIR|locus:2091236 AT3G19620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029391 AT1G78060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142434 AT5G10560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000029139 bxlB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ATH9 bxlB "Exo-1,4-beta-xylosidase bxlB" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P83344XYNB_PRUPE3, ., 2, ., 1, ., -0.75700.72920.9934N/Ano
Q9FGY1BXL1_ARATH3, ., 2, ., 1, ., 5, 50.74680.98880.8023yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.370.914
3rd Layer3.2.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_X0551
hypothetical protein (768 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.3327000301
Predicted protein (63 aa)
  •     0.461
fgenesh4_pg.C_LG_IX000155
hypothetical protein (242 aa)
  •     0.461

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query628
PLN03080779 PLN03080, PLN03080, Probable beta-xylosidase; Prov 0.0
PRK15098765 PRK15098, PRK15098, beta-D-glucoside glucohydrolas 2e-78
pfam01915221 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase fam 2e-63
pfam00933296 pfam00933, Glyco_hydro_3, Glycosyl hydrolase famil 1e-48
COG1472397 COG1472, BglX, Beta-glucosidase-related glycosidas 7e-46
pfam1431071 pfam14310, Fn3-like, Fibronectin type III-like dom 4e-10
>gnl|CDD|178629 PLN03080, PLN03080, Probable beta-xylosidase; Provisional Back     alignment and domain information 
 Score =  735 bits (1900), Expect = 0.0
 Identities = 307/640 (47%), Positives = 427/640 (66%), Gaps = 22/640 (3%)

Query: 1   MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT------- 53
           MYN G AGLT+W+PN+NIFRDPRWGRGQETPGEDP +   Y+  +V+G QG         
Sbjct: 143 MYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDD 202

Query: 54  --GSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASV 111
               +L ++ACCKHYTAYDL+ W    RY FNA V++QD+EDTY  PFK+C+ EGK + +
Sbjct: 203 GEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCL 262

Query: 112 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADA 171
           MCSYNQVNG P CA  D+L+     +W   GYI SDCD+V  ++  Q YT++PE+A AD 
Sbjct: 263 MCSYNQVNGVPACARKDLLQKA-RDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADV 321

Query: 172 IKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNL 231
           +KAG+D++CG ++  HT+ A+  G ++EED++ AL    +VQ+RLG+FDG+P    +G L
Sbjct: 322 LKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKL 381

Query: 232 GPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA 291
           GP +VCT  H++LAL+AA QGIVLLKN  + LPL+     ++A+IGP ++    + G+Y 
Sbjct: 382 GPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYT 441

Query: 292 GVACGYTTPLQGISRYA-KTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSI 350
           GV C  TT  +G+  Y  KT   AGC  V+CN +   G A   A++AD  V+V GLD S 
Sbjct: 442 GVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQ 501

Query: 351 EAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGY 410
           E E  DR  LLLPG+Q +L+S VA  S+ PVVLVL  GGPVDVSFAK DPRI +ILW+GY
Sbjct: 502 ETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGY 561

Query: 411 PGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA--ARGYPGRTYRFYK 468
           PG+ GG A+A+++FG  NPGG+LPMTWYP+ + + +PMTDM MRA  +RGYPGRTYRFY 
Sbjct: 562 PGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYT 620

Query: 469 GPVVFPFGHGMSYTTFAHTLSKAPNQFSVP--IATSLYAFKNTTISSNAIRVAHTN---- 522
           G VV+ FG+G+SYT F++ +  AP + S+         + K      + +          
Sbjct: 621 GDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSISRKPLLQRRDELDYVQIEDIAS 680

Query: 523 CNDAMSLGLHVDIKNTGDMAGTHTLLVFAK-PPAGNWSPNKQLIGFKKVHVTAGALQSVR 581
           C +++   +H+ + N G+M G+H +++F++ PP     P KQL+GF +VH  +G      
Sbjct: 681 C-ESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETE 739

Query: 582 LDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA 621
           + +  CKHLSV ++ G R +P+G+H L +GDL+HS+S++ 
Sbjct: 740 IVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779

Length = 779
>gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal domain Back     alignment and domain information
>gnl|CDD|216204 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain Back     alignment and domain information
>gnl|CDD|224389 COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|222669 pfam14310, Fn3-like, Fibronectin type III-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 628
PLN03080779 Probable beta-xylosidase; Provisional 100.0
PRK15098765 beta-D-glucoside glucohydrolase; Provisional 100.0
COG1472397 BglX Beta-glucosidase-related glycosidases [Carboh 100.0
PF00933299 Glyco_hydro_3: Glycosyl hydrolase family 3 N termi 100.0
PRK05337337 beta-hexosaminidase; Provisional 100.0
PF01915227 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-ter 100.0
PF1431071 Fn3-like: Fibronectin type III-like domain; PDB: 3 99.83
PF07705101 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic 96.35
PF1269082 BsuPI: Intracellular proteinase inhibitor; InterPr 95.38
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 94.48
PF14874102 PapD-like: Flagellar-associated PapD-like 91.33
PRK13203102 ureB urease subunit beta; Reviewed 89.93
cd00407101 Urease_beta Urease beta-subunit; Urease is a nicke 89.63
TIGR00192101 urease_beta urease, beta subunit. In a number of s 86.81
PRK13201136 ureB urease subunit beta; Reviewed 86.74
PRK13202104 ureB urease subunit beta; Reviewed 86.6
PF00699100 Urease_beta: Urease beta subunit CAUTION: The Pros 85.67
PRK13205162 ureB urease subunit beta; Reviewed 85.06
PF0550689 DUF756: Domain of unknown function (DUF756); Inter 82.13
COG0486454 ThdF Predicted GTPase [General function prediction 81.14
PRK13198158 ureB urease subunit beta; Reviewed 80.84
COG0832106 UreB Urea amidohydrolase (urease) beta subunit [Am 80.54
PRK13204159 ureB urease subunit beta; Reviewed 80.39
>PLN03080 Probable beta-xylosidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-143  Score=1236.86  Aligned_cols=616  Identities=49%  Similarity=0.963  Sum_probs=534.7

Q ss_pred             CCCCcccceeeCccccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHhcCC---------CCCCceEEeecccccccCC
Q 006863            2 YNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT---------GSRLKVAACCKHYTAYDLD   72 (628)
Q Consensus         2 ~~~~~~Gi~~~~P~~di~r~p~~gr~~e~fgEDP~l~~~~a~a~v~GlQ~~~---------~~~~~v~a~~KHF~g~g~~   72 (628)
                      ||.+.+|+++|+|++||+|||||||++|||||||+|+++|+.|||+|||+.+         .++.+|+||+||||||+++
T Consensus       144 g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e  223 (779)
T PLN03080        144 YNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLE  223 (779)
T ss_pred             ccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCcc
Confidence            4555568998999999999999999999999999999999999999999841         1334599999999999998


Q ss_pred             CCCCCCceeecccCCHHHHHHhccHHHHHHHHcCCCceEEeccccCCCcccccCHHHHHHHHHhhcCCCcEEEcchhhhh
Q 006863           73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVG  152 (628)
Q Consensus        73 ~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~  152 (628)
                      .+.+.+|...++.+++++|+|+||+||+++|++|.+.+||||||++||+|||+|++||++ ||+||||+|+|||||++|.
T Consensus       224 ~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~  302 (779)
T PLN03080        224 KWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVA  302 (779)
T ss_pred             ccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHH
Confidence            777778888889999999999999999999999988899999999999999999999986 9999999999999999999


Q ss_pred             hhhccccccCChHHHHHHHHHcCCCcCCchhhHHHHHHHHHCCCCCHHHHHHHhhhhHHHHHHhCCCCCCCCCCCCCCCC
Q 006863          153 VLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLG  232 (628)
Q Consensus       153 ~~~~~~~~~~~~~~a~~~al~AG~D~~~~~~~~~~l~~av~~G~i~~~~ld~av~RIL~~k~~~Glf~~~p~~~~~~~~~  232 (628)
                      .+...|++..+.++++++||+||+||+|+.++.+.|.+||++|+|+|++||+||+|||++|+++|+|+.+|...++.++.
T Consensus       303 ~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~  382 (779)
T PLN03080        303 TIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLG  382 (779)
T ss_pred             HhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCccccccccc
Confidence            99988888778999999999999999998877889999999999999999999999999999999999444333444444


Q ss_pred             CCCCCCHHHHHHHHHHHhhcceeccCCCCCCCCcCCCCceEEEEccCCccccccccccccCCCCcCCHHHHHHHhh-cce
Q 006863          233 PRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYA-KTI  311 (628)
Q Consensus       233 ~~~v~~~~~~~la~~~A~eSivLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~g~~~~~~t~~e~l~~~~-~~~  311 (628)
                      ...+++++|+++|+|+|++|||||||++++|||++.+.++|+||||+|+....++|+|++.+++.++++++|+++. .+.
T Consensus       383 ~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~  462 (779)
T PLN03080        383 PNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTS  462 (779)
T ss_pred             ccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcce
Confidence            5678899999999999999999999999999998765579999999999988888889888888999999999975 467


Q ss_pred             eecccCccccCCcccHHHHHHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCcee
Q 006863          312 HQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPV  391 (628)
Q Consensus       312 y~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~~~~k~vVvVl~~g~P~  391 (628)
                      |..||....+.+...+++|+++|++||+|||++|.+...++|+.||.+|.||+.|.+||++|++++++|||||+++|+|+
T Consensus       463 y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv  542 (779)
T PLN03080        463 FAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPV  542 (779)
T ss_pred             eccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCcee
Confidence            88888655444456788999999999999999999988999999999999999999999999986777899999999999


Q ss_pred             eecccccCCCccEEEEecCCCchhHHHHHHHHhCCCCCCeecCcccCcccccCCCCCccccccc--cCCCCCCcccccCC
Q 006863          392 DVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA--ARGYPGRTYRFYKG  469 (628)
Q Consensus       392 ~l~~~~~~~~v~AiL~a~~~G~~~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~--~~~~~~~~Yr~~~~  469 (628)
                      +|+|+.+.++++|||++|||||++|+|+||||||++|||||||+||||+++ +++|++++++++  ..+|++++||||+.
T Consensus       543 ~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~  621 (779)
T PLN03080        543 DVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTG  621 (779)
T ss_pred             eccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeeccccc-ccCCccccCcccccccCCCCCCceeCCC
Confidence            999987667899999999999999999999999999999999999999988 789998887754  35688999999999


Q ss_pred             CcccccCcCCCCCCceeCCCccCCCccccccccccccccccc--c-c---ccccccc-cCCCCCceEEEEEEEEeCCCCC
Q 006863          470 PVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTI--S-S---NAIRVAH-TNCNDAMSLGLHVDIKNTGDMA  542 (628)
Q Consensus       470 ~~~ypFG~GLSYTtF~~s~~~~~~~~~~~~~~~~~~~~~~~~--~-~---~~~~~~~-~~~~~~~~~~vsv~VtNtG~~~  542 (628)
                      +|+||||||||||||+||+++++...++........ .....  . .   ..+.+.+ ..|+.. .++|+|+|||||+++
T Consensus       622 ~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~VtNtG~~~  699 (779)
T PLN03080        622 DVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDS-ISRKPLLQRRDELDYVQIEDIASCESL-RFNVHISVSNVGEMD  699 (779)
T ss_pred             CcceeccCCCccceeEeccccccccccccccccccc-cccccccccccccccccccccccCCCc-eEEEEEEEEECCccc
Confidence            999999999999999999987543111110000000 00000  0 0   0000000 112222 489999999999999


Q ss_pred             cceEEEEEEeCCCCC-CCcchhhccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEEEEEEeCCCCeeEEEE
Q 006863          543 GTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA  621 (628)
Q Consensus       543 G~evvQlY~~~p~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~ss~~~~~~~  621 (628)
                      |+||||||+++|.+. .+|+|||+||+||+|+||||++|+|+|+++++|++||++++|++++|+|+|+||+++|++++++
T Consensus       700 G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~  779 (779)
T PLN03080        700 GSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI  779 (779)
T ss_pred             CcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence            999999999999875 8999999999999999999999999999657999999999999999999999999999998863

>PRK15098 beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK05337 beta-hexosaminidase; Provisional Back     alignment and domain information
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3 Back     alignment and domain information
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A Back     alignment and domain information
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins Back     alignment and domain information
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PRK13203 ureB urease subunit beta; Reviewed Back     alignment and domain information
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide Back     alignment and domain information
>TIGR00192 urease_beta urease, beta subunit Back     alignment and domain information
>PRK13201 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13202 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3 Back     alignment and domain information
>PRK13205 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins Back     alignment and domain information
>COG0486 ThdF Predicted GTPase [General function prediction only] Back     alignment and domain information
>PRK13198 ureB urease subunit beta; Reviewed Back     alignment and domain information
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13204 ureB urease subunit beta; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query628
2x40_A721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 5e-32
4i8d_A714 Crystal Structure Of Beta-D-Glucoside Glucohydrolas 4e-31
2x42_A721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 4e-31
3zyz_A713 Crystal Structure Of A Glycoside Hydrolase Family 3 6e-31
3usz_A822 Crystal Structure Of Truncated Exo-1,31,4-Beta-Gluc 2e-26
3rrx_A822 Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Bet 2e-26
3ac0_A845 Crystal Structure Of Beta-Glucosidase From Kluyvero 3e-26
3abz_A845 Crystal Structure Of Se-Met Labeled Beta-Glucosidas 5e-26
4i3g_A829 Crystal Structure Of Desr, A Beta-glucosidase From 6e-24
4i3g_A829 Crystal Structure Of Desr, A Beta-glucosidase From 3e-15
1ex1_A605 Beta-D-Glucan Exohydrolase From Barley Length = 605 6e-18
1lq2_A602 Crystal Structure Of Barley Beta-D-Glucan Glucohydr 7e-18
3tev_A351 The Crystal Structure Of Glycosyl Hydrolase From De 6e-04
3bmx_A642 Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis 8e-04
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Glycerol Length = 721 Back     alignment and structure 
Iteration: 1

 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 175/682 (25%), Positives = 275/682 (40%), Gaps = 158/682 (23%)
Query: 13  SPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLD 72
           +P +NI R+P  GR  E   EDPVL+G+ A+S+V+G+Q        V AC KH+ A    
Sbjct: 117 APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG-----VGACIKHFVA---- 167
Query: 73  NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKN 132
           N    +R   +  VS++ L + Y   F+  V + K  SVM +YN++NGK    +  +LK 
Sbjct: 168 NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKK 227
Query: 133 TIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDC-GPFLAIHTE-- 189
            +  +W  +G+++SD           +    P     + +KAG DL   G    ++TE  
Sbjct: 228 VLREEWGFEGFVMSDW----------YAGDNP----VEQLKAGNDLIMPGKAYQVNTERR 273
Query: 190 -------GAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXX 242
                   A++ G L EE ++  +   + V +        PS + +      D+      
Sbjct: 274 DEIEEIMEALKEGKLSEEVLDECVRNILKVLVNA------PSFKNYRYSNKPDL--EKHA 325
Query: 243 XXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP-- 300
                    G+VLL+N    LPLS   +  +A+ G     T+       G   G T P  
Sbjct: 326 KVAYEAGAEGVVLLRNE-EALPLS--ENSKIALFGTGQIETIK-----GGTGSGDTHPRY 377
Query: 301 ----LQGISR---------------YAKTIHQAGCFGVACNG----------NQLIGAAE 331
               L+GI                 Y K + +   +    +              +   E
Sbjct: 378 AISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKE 437
Query: 332 V--AARQADATVLVMGLDQSIEAEFIDR----AGLLLPGRQQELVSRVAKA--SRGPVVL 383
           +   A++ D  V+V+     I  E  DR        L   + +L+  V++    +G  V+
Sbjct: 438 IHKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVI 494
Query: 384 VLM-CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDY 442
           VL+  G PV+V   ++   +  IL V   GQ  G  +ADVL GR NP GKLP T +P+DY
Sbjct: 495 VLLNIGSPVEVVSWRD--LVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDY 551
Query: 443 VSRLPMTDMRMRAARGYPGRT----------------YRFYKGPVVFP---FGHGMSYTT 483
            S +P        +  +PG                  YR+Y    V P   FG+G+SYTT
Sbjct: 552 -SDVP--------SWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTT 602
Query: 484 FAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAG 543
           F                   Y+  N +     +RV +              I+NTG  AG
Sbjct: 603 FE------------------YSDLNVSFDGETLRVQYR-------------IENTGGRAG 631
Query: 544 THTLLVFAKPPAGNW-SPNKQLIGFKKVH-VTAGALQSVRLDIHVCKHLSVVDKFGIRRI 601
                V+ K P G    P ++L  F K   +  G  + V L+I V    S   +  +  +
Sbjct: 632 KEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWV--V 689
Query: 602 PMGEHSLHIGDLKHSISLQANL 623
             GE+ + +G    +I L+   
Sbjct: 690 EAGEYEVRVGASSRNIKLKGTF 711
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From Trichoderma Reesei Length = 714 Back     alignment and structure
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose Length = 721 Back     alignment and structure
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3 Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a Resolution. Length = 713 Back     alignment and structure
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 Back     alignment and structure
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 Back     alignment and structure
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 Back     alignment and structure
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From Kluyveromyces Marxianus Length = 845 Back     alignment and structure
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 Back     alignment and structure
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 Back     alignment and structure
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley Length = 605 Back     alignment and structure
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole Length = 602 Back     alignment and structure
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From Deinococcus Radiodurans R1 Length = 351 Back     alignment and structure
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis Length = 642 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query628
2x41_A721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 1e-138
3rrx_A822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 1e-119
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 1e-113
3abz_A 845 Beta-glucosidase I; glycoside hydrolase family3 be 2e-71
3abz_A845 Beta-glucosidase I; glycoside hydrolase family3 be 1e-54
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 3e-36
3sql_A535 Glycosyl hydrolase family 3; structural genomics, 1e-17
2oxn_A340 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O 2e-11
4g6c_A342 Beta-hexosaminidase 1; ssgcid, niaid, structural g 9e-09
3tev_A351 Glycosyl hyrolase, family 3; PSI-biology, midwest 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Length = 721 Back     alignment and structure
 Score =  418 bits (1076), Expect = e-138
 Identities = 154/669 (23%), Positives = 251/669 (37%), Gaps = 128/669 (19%)

Query: 12  WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDL 71
            +P +NI R+P  GR  E   EDPVL+G+ A+S+V+G+Q        V AC KH+ A + 
Sbjct: 116 LAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQ-----GVGACIKHFVANNQ 170

Query: 72  DNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILK 131
           +      R   +  VS++ L + Y   F+  V + K  SVM +YN++NGK    +  +LK
Sbjct: 171 ETN----RMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLK 226

Query: 132 NTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG---------- 181
             +  +W  +G+++SD  +               +   + +KAG DL             
Sbjct: 227 KVLREEWGFEGFVMSDWYAG--------------DNPVEQLKAGNDLIMPGKAYQVNTER 272

Query: 182 PFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAH 241
                    A++ G L EE ++  +   + V +    F     +               H
Sbjct: 273 RDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFKNYRYSNKPD--------LEKH 324

Query: 242 QQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYT-TP 300
            ++A +A  +G+VLL+N    LPLS      +A+ G     T+            Y  + 
Sbjct: 325 AKVAYEAGAEGVVLLRNE-EALPLSENS--KIALFGTGQIETIKGGTGSGDTHPRYAISI 381

Query: 301 LQGISRYAKTIHQAGCFGVACNGN---------------------------QLIGAAEVA 333
           L+GI        +                                               
Sbjct: 382 LEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIHKL 441

Query: 334 ARQADATVLVMGLDQSIEAEFIDRAG----LLLPGRQQELVSRVAKASRG---PVVLVLM 386
           A++ D  V+V+        E  DR        L   + +L+  V++        V+++L 
Sbjct: 442 AKKNDVAVIVISRISG---EGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLN 498

Query: 387 CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW------YPQ 440
            G PV+V   ++      IL V   GQ  G  +ADVL GR NP GKLP T+       P 
Sbjct: 499 IGSPVEVVSWRDLV--DGILLVWQAGQETGRIVADVLTGRINPSGKLPTTFPRDYSDVPS 556

Query: 441 DYVSRLPMTDMRMRAARGYPGRTYRFY---KGPVVFPFGHGMSYTTFAHTLSKAPNQFSV 497
                 P  + +           YR+Y        + FG+G+SYTTF             
Sbjct: 557 WTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFE------------ 604

Query: 498 PIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN 557
                   + +  +S            D  +L +   I+NTG  AG     V+ K P G 
Sbjct: 605 --------YSDLNVSF-----------DGETLRVQYRIENTGGRAGKEVSQVYIKAPKGK 645

Query: 558 WS-PNKQLIGFKKVHV-TAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKH 615
              P ++L  F K  +   G  + V L+I V + L+  +      +  GE+ + +G    
Sbjct: 646 IDKPFQELKAFHKTRLLNPGESEEVVLEIPV-RDLASFNG-EEWVVEAGEYEVRVGASSR 703

Query: 616 SISLQANLE 624
           +I L+    
Sbjct: 704 NIKLKGTFS 712
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Length = 822 Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 Back     alignment and structure
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Length = 642 Back     alignment and structure
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Length = 535 Back     alignment and structure
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Length = 340 Back     alignment and structure
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Length = 351 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query628
3zyz_A713 Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.1 100.0
3abz_A845 Beta-glucosidase I; glycoside hydrolase family3 be 100.0
2x41_A721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 100.0
3rrx_A822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 100.0
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 100.0
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 100.0
3sql_A535 Glycosyl hydrolase family 3; structural genomics, 100.0
3tev_A351 Glycosyl hyrolase, family 3; PSI-biology, midwest 100.0
2oxn_A340 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O 100.0
4gvf_A349 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: N 100.0
4g6c_A348 Beta-hexosaminidase 1; ssgcid, niaid, structural g 100.0
3idu_A127 Uncharacterized protein; all beta-protein, structu 96.9
2l0d_A114 Cell surface protein; structural genomics, northea 96.19
2kut_A122 Uncharacterized protein; structural genomics, PSI- 96.13
3isy_A120 Bsupi, intracellular proteinase inhibitor; intrace 92.83
4ep8_B101 Urease subunit beta; alpha-beta barrel, nickel met 89.09
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 87.55
1yew_A382 Particulate methane monooxygenase, B subunit; memb 86.92
1w8o_A 601 Bacterial sialidase; 3D-structure, glycosidase, hy 86.69
4ac7_B126 Urease subunit beta; hydrolase, bacillus pasteurii 85.93
4ubp_B126 Protein (urease (chain B)); bacillus pasteurii, ni 85.93
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 84.8
2x3c_A 343 Toxic extracellular endopeptidase; hydrolase; 1.99 82.98
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 81.39
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A* Back     alignment and structure
Probab=100.00  E-value=4.7e-133  Score=1144.45  Aligned_cols=560  Identities=25%  Similarity=0.379  Sum_probs=466.0

Q ss_pred             ccee-eCcccc-ccCCCCCCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCceEEeecccccccCCCCCCCCceeeccc
Q 006863            8 GLTY-WSPNVN-IFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNAR   85 (628)
Q Consensus         8 Gi~~-~~P~~d-i~r~p~~gr~~e~fgEDP~l~~~~a~a~v~GlQ~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~   85 (628)
                      |+|+ |+|++| |.|||+|||++|+|||||+|+++|+.|+|+|||++     ||+||+|||||||++.    .|...++.
T Consensus       105 Gi~~~laP~vd~v~r~P~~gR~~e~fgeDP~l~~~~a~a~v~Glq~~-----gV~a~~KHF~g~g~e~----~r~~~~~~  175 (713)
T 3zyz_A          105 GIHVILGPVAGPLGKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQSV-----GVQATAKHYILNEQEL----NRETISSN  175 (713)
T ss_dssp             TCSEECCCBCSSCCCSTTCTTGGGTTCSCHHHHHHHHHHHHHHHHHT-----TCEEEEEEETTCCCST----TTTTCEEC
T ss_pred             CCCEEECCeecccCCCCCCCcccccccCCHHHHHHHHHHHHHHHhhC-----CeEEEEecCccCCccc----cCccccCc
Confidence            9999 999999 88999999999999999999999999999999998     7999999999999765    35566788


Q ss_pred             CCHHHHHHhccHHHHHHHHcCCCceEEeccccCCCcccccCHHHHHHHHHhhcCCCcEEEcchhhhhhhhccccccCChH
Q 006863           86 VSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPE  165 (628)
Q Consensus        86 ~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~  165 (628)
                      +++++|+|+||+||+++|++| +.+||||||++||+|||+|++||++|||+||||+|+|||||+++.             
T Consensus       176 v~~~~l~e~~l~pF~~ai~ag-~~~VM~syn~vng~pa~~s~~ll~~iLR~e~GF~G~VvSD~~a~~-------------  241 (713)
T 3zyz_A          176 PDDRTLHELYTWPFADAVQAN-VASVMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGYVMTDWNAQH-------------  241 (713)
T ss_dssp             CCHHHHHHTTTHHHHHHHHTT-CSEEEECSSEETTEEGGGCHHHHCCCCCCCSCCCSEEEESTTCCC-------------
T ss_pred             CCHHHHHHhhhHHHHHHHHcC-CCeEEeeccccCCccCcCCHHHHHHHHHHHcCCCEEEEecCccHH-------------
Confidence            999999999999999999976 899999999999999999999999999999999999999998642             


Q ss_pred             HHHHHHHHcCCCcCCch--------hhHHHHHHHHHCCCCCHHHHHHHhhhhHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q 006863          166 EAAADAIKAGLDLDCGP--------FLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVC  237 (628)
Q Consensus       166 ~a~~~al~AG~D~~~~~--------~~~~~l~~av~~G~i~~~~ld~av~RIL~~k~~~Glf~~~p~~~~~~~~~~~~v~  237 (628)
                       ++++|++||+||+|+.        ++.+.|.+||++|+|++++||+||+|||++|+++|+|+ +++..  ...  ....
T Consensus       242 -~~~~ai~AG~D~~m~~~~~~~~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~lg~~~-~~~~~--~~~--~~~~  315 (713)
T 3zyz_A          242 -TTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRILAAWYLTGQDQ-AGYPS--FNI--SRNV  315 (713)
T ss_dssp             -CSHHHHHHTCCBBSSSSCTTSCCCCSTHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTTTS-TTCCC--CCT--TSCC
T ss_pred             -HHHHHHHcCCCEeCCCCcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCcc-cCCCC--ccc--cccc
Confidence             3478999999999963        23478999999999999999999999999999999997 44321  111  1123


Q ss_pred             CHHHHHHHHHHHhhcceeccCCCCCCCCcCCCCceEEEEccCCcccc-----------------ccccccc--cCCCCcC
Q 006863          238 TPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTV-----------------TMIGNYA--GVACGYT  298 (628)
Q Consensus       238 ~~~~~~la~~~A~eSivLLKN~~~~LPL~~~~~~kIaviGp~a~~~~-----------------~~~G~~~--g~~~~~~  298 (628)
                      +++|+++++++|++|||||||++++|||++.  +||+||||+|+...                 ...|+++  ..+++.+
T Consensus       316 ~~~h~~la~~~a~~sivLLKN~~~~LPL~~~--~~IaViG~~A~~~~~G~~~~~~~~~~~~~~~~~~g~gs~~~~~~~~~  393 (713)
T 3zyz_A          316 QGNHKTNVRAIARDGIVLLKNDANILPLKKP--ASIAVVGSAAIIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFV  393 (713)
T ss_dssp             CTTTHHHHHHHHHHTCEEEEEGGGCCSCCCC--SEEEEESGGGSCCTTTTTCTTSGGGCCCCSSCCCCBSTTCCCCSCCC
T ss_pred             CHHHHHHHHHhhhcceEEEccCCCccccCCC--CEEEEECCCccccccccccccccccccccCceecccCCCCcCcCCCC
Confidence            6799999999999999999999999999864  79999999987421                 1123233  2456788


Q ss_pred             CHHHHHHHhhcceeecccCccccCCcccHHHHHHHhhcCCEEEEEEeCCCccccccC--------CCCCCCCChhHHHHH
Q 006863          299 TPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFI--------DRAGLLLPGRQQELV  370 (628)
Q Consensus       299 t~~e~l~~~~~~~y~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~--------Dr~~l~L~~~q~~li  370 (628)
                      +++++|+++...   .|+. +.......+++|+++|+++|++||++|..   ++||.        ||.+|.||+.|.+||
T Consensus       394 t~~~~i~~~~~~---~g~~-v~~~~~~~~~~a~~~A~~aDv~Iv~vg~~---~gEg~~~~~g~~gDR~~l~Lp~~Q~~Li  466 (713)
T 3zyz_A          394 APYDAINTRASS---QGTQ-VTLSNTDNTSSGASAARGKDVAIVFITAD---SGEGYITVEGNAGDRNNLDPWHNGNALV  466 (713)
T ss_dssp             CHHHHHHHHHHT---TTCE-EEEECSCCHHHHHHHHTTCSEEEEEEEEC---CBCTTCCBTTBCSSCSCSSCSTTHHHHH
T ss_pred             CHHHHHHHHhcc---CCeE-EEEeCCccHHHHHHHhhcCCEEEEEeccc---CCCCccccccCCCCcccccCChhHHHHH
Confidence            999999987421   1111 00111335789999999999999999854   46666        999999999999999


Q ss_pred             HHHHHhcCCCEEEEEecCceeee-cccccCCCccEEEEecCCCchhHHHHHHHHhCCCCCCeecCcccCcccccCCCCCc
Q 006863          371 SRVAKASRGPVVLVLMCGGPVDV-SFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMT  449 (628)
Q Consensus       371 ~~v~~~~~k~vVvVl~~g~P~~l-~~~~~~~~v~AiL~a~~~G~~~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~  449 (628)
                      ++|++. ++|+|||+++|+|++| +|+ +.++++|||++|||||++|+||||||||++|||||||+|| |++. +|+|..
T Consensus       467 ~~v~~~-~~~~VVVl~sG~p~~~~~w~-~~~~v~Ail~aw~pGqegG~AiAdvL~G~~nPSGkLP~T~-p~~~-~d~p~~  542 (713)
T 3zyz_A          467 QAVAGA-NSNVIVVVHSVGAIILEQIL-ALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTI-AKSP-NDYNTR  542 (713)
T ss_dssp             HHHHHH-CSCEEEEEEESSCCCCHHHH-TCTTEEEEEECCCCGGGHHHHHHHHHTTSSCCCCCCSSCB-CSCG-GGSSCC
T ss_pred             HHHHHh-CCCeEEEEecCCcccchhhh-hccccCEEEEcCCCCchhhheehhhhcCCcCCCccCccee-cCCh-hhCCCc
Confidence            999975 6799999999999999 676 4578999999999999999999999999999999999997 8876 778843


Q ss_pred             cccccccCCCCC---CcccccCC---CcccccCcCCCCCCceeCCCccCCCccccccccccccccccccccccccc-ccC
Q 006863          450 DMRMRAARGYPG---RTYRFYKG---PVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVA-HTN  522 (628)
Q Consensus       450 ~~~~~~~~~~~~---~~Yr~~~~---~~~ypFG~GLSYTtF~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  522 (628)
                      . +..+...|.+   ++||||+.   +|+||||||||||||+||++++++....   .         +....+..+ ...
T Consensus       543 ~-~~~~~~~y~eg~~vgYRy~d~~~~~plypFG~GLSYTtF~ys~l~~~~~~~~---~---------~~~~~~~~gg~~~  609 (713)
T 3zyz_A          543 I-VSGGSDSFSEGLFIDYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAKS---G---------PATGAVVPGGPSD  609 (713)
T ss_dssp             C-CCSSEECCTTTTCCHHHHHHHTTCCCSBCTTCCBCSSCEEEEEEEEEECCCC---E---------ECCSCEETTEETT
T ss_pred             c-ccCCccccCCCCccCceeccCCCCceeecCCCCCCcccEEEeeeEecccccc---C---------ccccccccccccc
Confidence            1 1111223433   58999985   7999999999999999999987431000   0         000000000 000


Q ss_pred             CCCCceEEEEEEEEeCCCCCcceEEEEEEeCCCCC-CCcchhhccccccccCCCCeEEEEEEecCCCCeeEEeCC-CCEE
Q 006863          523 CNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKF-GIRR  600 (628)
Q Consensus       523 ~~~~~~~~vsv~VtNtG~~~G~evvQlY~~~p~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~-~~~~  600 (628)
                      +.+. .++|+|+|||||+++|+||||||+++|.+. .+|.|+||||+||+|+||||++|+|+|++ ++|++||.. ++|+
T Consensus       610 ~~~~-~~~vsv~VtNtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~-~~ls~~d~~~~~w~  687 (713)
T 3zyz_A          610 LFQN-VATVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQSGTATFNIRR-RDLSYWDTASQKWV  687 (713)
T ss_dssp             TTSE-EEEEEEEEEECSSSCEEEEEEEEEECCTTSSSCCSCEEEEEEEEEECTTCEEEEEEEEEG-GGGCEEETTTTEEE
T ss_pred             ccCC-eEEEEEEEEeCCCCccceeeeeeeecCCCCCCchhHHhhhcccceeCCCCeEEEEEEEcH-HHeeeeecCCCeEE
Confidence            1122 699999999999999999999999999887 89999999999999999999999999999 999999986 7899


Q ss_pred             ecCeEEEEEEeCCCCeeEEEEEEe
Q 006863          601 IPMGEHSLHIGDLKHSISLQANLE  624 (628)
Q Consensus       601 ~~~G~y~i~vG~ss~~~~~~~~~~  624 (628)
                      +|+|+|+|+||.||++++++.+++
T Consensus       688 ve~G~y~v~vG~sS~d~~l~~~~~  711 (713)
T 3zyz_A          688 VPSGSFGISVGASSRDIRLTSTLS  711 (713)
T ss_dssp             ECCEEEEEEEESSSSCEEEEEEEE
T ss_pred             EcCceEEEEEECCCCCcceeEEEE
Confidence            999999999999999999987764
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Back     alignment and structure
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Back     alignment and structure
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Back     alignment and structure
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Back     alignment and structure
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Back     alignment and structure
>4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A* Back     alignment and structure
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A* Back     alignment and structure
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A Back     alignment and structure
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans} Back     alignment and structure
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens} Back     alignment and structure
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis} Back     alignment and structure
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ... Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 628
d1x38a1388 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-te 8e-31
d1x38a2214 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, 3e-24
d1tr9a_330 c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio chol 4e-11
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 388 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: NagZ-like
domain: Beta-D-glucan exohydrolase, N-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  122 bits (306), Expect = 8e-31
 Identities = 56/257 (21%), Positives = 107/257 (41%), Gaps = 28/257 (10%)

Query: 11  YWSPNVNIFRDPRWGRGQETPGEDPVLTGKY-----------AASYVRGLQGNTGSRLKV 59
            ++P + + RDPRWGR  E+  ED  +                  +  G+    G   KV
Sbjct: 143 AFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGKN-KV 201

Query: 60  AACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVN 119
           AAC KH+      +   VD  + N  +  ++     ++P     ++  V++VM SY+  N
Sbjct: 202 AACAKHFVG----DGGTVDGINENNTIINREGLMNIHMPAYKNAMDKGVSTVMISYSSWN 257

Query: 120 GKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDL- 178
           G    A+ D++   +    +  G+++SD + +     T         +   +I AGLD+ 
Sbjct: 258 GVKMHANQDLVTGYLKDTLKFKGFVISDWEGID--RITTPAGSDYSYSVKASILAGLDMI 315

Query: 179 ---DCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLG-PR 234
              +          G V GG++    ++ A+   + V+  +G+F+      P+ +     
Sbjct: 316 MVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFE-----NPYADPAMAE 370

Query: 235 DVCTPAHQQLALQAAHQ 251
            +    H+ LA +AA +
Sbjct: 371 QLGKQEHRDLAREAARK 387
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 214 Back     information, alignment and structure
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Length = 330 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query628
d1x38a1388 Beta-D-glucan exohydrolase, N-terminal domain {Bar 100.0
d1x38a2214 Beta-D-glucan exohydrolase, C-terminal domain {Bar 100.0
d1tr9a_330 Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 100.0
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 96.03
d2q3za2114 Transglutaminase, two C-terminal domains {Human (H 90.38
d1ejxb_101 Urease, beta-subunit {Klebsiella aerogenes [TaxId: 89.69
d4ubpb_122 Urease, beta-subunit {Bacillus pasteurii [TaxId: 1 87.69
d1ex0a2112 Transglutaminase, two C-terminal domains {Human (H 86.26
d1e9ya1133 Urease, beta-subunit {Helicobacter pylori [TaxId: 83.89
d1vjja2115 Transglutaminase, two C-terminal domains {Human (H 83.04
d1g0da2112 Transglutaminase, two C-terminal domains {Red sea 81.38
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: NagZ-like
domain: Beta-D-glucan exohydrolase, N-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=1.6e-53  Score=456.94  Aligned_cols=235  Identities=26%  Similarity=0.470  Sum_probs=204.8

Q ss_pred             cccee-eCccccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHhcCCC-----------CCCceEEeecccccccCCCC
Q 006863            7 AGLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTG-----------SRLKVAACCKHYTAYDLDNW   74 (628)
Q Consensus         7 ~Gi~~-~~P~~di~r~p~~gr~~e~fgEDP~l~~~~a~a~v~GlQ~~~~-----------~~~~v~a~~KHF~g~g~~~~   74 (628)
                      .|+|+ |+|++||.|||||||++|+|||||+|+++|+. +|+++|+...           +..||+||+|||||||... 
T Consensus       138 ~Gin~~~aPv~Dv~~~p~~gr~~et~geDp~l~~~~~~-~v~~~~g~~~~~~~~G~~~~~~~~gV~a~~KHFpG~g~~~-  215 (388)
T d1x38a1         138 TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTE-LIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTV-  215 (388)
T ss_dssp             TTCCEECCCBCCCCSCTTSTTGGGSSCSSHHHHHHGGG-HHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCG-
T ss_pred             cCCccccCCcccccccccccccccCccCCHHHHHHHHh-hhhhhhchhhhhhcccccccccccCcceeeeeeecCCccc-
Confidence            39999 99999999999999999999999999999965 7888887531           2358999999999998542 


Q ss_pred             CCCCceeecccCCHHHHHHhccHHHHHHHHcCCCceEEeccccCCCcccccCHHHHHHHHHhhcCCCcEEEcchhhhhhh
Q 006863           75 NGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVL  154 (628)
Q Consensus        75 ~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~  154 (628)
                        .+++..++.+++++|+|+||+||+++|++| +.+|||+||.+||+|+|.|+++|+++||+||||+|+|||||++|.++
T Consensus       216 --~~~~~~~~~i~~~~l~~~~l~pf~~~i~~g-~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~~gF~G~VvSD~~~m~~~  292 (388)
T d1x38a1         216 --DGINENNTIINREGLMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRI  292 (388)
T ss_dssp             --GGCTTCEECCCHHHHHHHTSHHHHHHHHTT-CCEEEECSSEETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGG
T ss_pred             --cCccccccchhHHHHHHHhhhhhHHHHhhc-cccccccccccCCccccCCHHHHHHHHHhccCCCceeecchhhcccc
Confidence              234455667899999999999999999877 88999999999999999999999999999999999999999999988


Q ss_pred             hccccccCChHHHHHHHHHcCCCcCCch----hhHHHHHHHHHCCCCCHHHHHHHhhhhHHHHHHhCCCCCCCCCCCCCC
Q 006863          155 YNTQHYTRTPEEAAADAIKAGLDLDCGP----FLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGN  230 (628)
Q Consensus       155 ~~~~~~~~~~~~a~~~al~AG~D~~~~~----~~~~~l~~av~~G~i~~~~ld~av~RIL~~k~~~Glf~~~p~~~~~~~  230 (628)
                      ...  +.....++.+.+++||+||+|.+    .+.+.|.+||++|+|+++|||+||+|||++|+++|||| +|+..+.. 
T Consensus       293 ~~~--~~~~~~~~~~~a~~ag~d~~~~~~~~~~~~~~l~~av~~G~i~~~rid~sv~Ril~~k~~lGlfd-~p~~~~~~-  368 (388)
T d1x38a1         293 TTP--AGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFE-NPYADPAM-  368 (388)
T ss_dssp             SSS--TTTTHHHHHHHHHHHTCCBEECCSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTTTT-CCSCCGGG-
T ss_pred             ccc--cCCcHHHHHHHHHhcCCCeecCCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCC-CCCCChhh-
Confidence            643  33466778899999999998753    45678999999999999999999999999999999999 77754321 


Q ss_pred             CCCCCCCCHHHHHHHHHHHhhc
Q 006863          231 LGPRDVCTPAHQQLALQAAHQG  252 (628)
Q Consensus       231 ~~~~~v~~~~~~~la~~~A~eS  252 (628)
                        ...+++++|+++|+++|+||
T Consensus       369 --~~~i~~~~h~~~a~~aA~~S  388 (388)
T d1x38a1         369 --AEQLGKQEHRDLAREAARKS  388 (388)
T ss_dssp             --GGGTTCHHHHHHHHHHHHHH
T ss_pred             --hhhcCCHHHHHHHHHHHhcC
Confidence              24578999999999999997
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]} Back     information, alignment and structure
>d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]} Back     information, alignment and structure
>d1g0da2 b.1.5.1 (A:472-583) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]} Back     information, alignment and structure