Citrus Sinensis ID: 006868

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
Protein Sequence
MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS
Secondary Structure (PSIPRED)
ccccccccEEEEEcccccHHHHHHHHHHHHHHHcccccEEEccccccccccccccEEEEEEEcccccccccHHHHHHHHHHccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEcccccccccEEEEEEEEcccccccccccEEEEEEcccHHHHHHHHHHHccccccEEEEccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHccccccccHHHHHHHccccccccccccccccccccEEEEEEEEEEEEccccccccccccHHHHccccccccEEEEEEEccccccccccccEEEEcccccHHHHHHHHHHHHHHHcccccccEEEEEccccccccccHHHHHHHHHHcccccccccccEEEEEcccccccccHHHHHHHcHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEcHHHccHHHcccccEEEEEEEEccccccccHHHHHHHHHHHcccccccccccEEEEEEEEccccccccHHHHHHHHHHHHcccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEccccccccHccccccccccccccHHHHcccccccccccccccccEEEEEEEEcccccccccEEEEEEEEccccEEEccccEEEEEccccHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHcccEcccHHHHHHHccEcccEEEEccccccccccEEEEEEEccEEEcccccEEEcHHHHHHHccccccccEEEEEEEccccccccccccEEEEccHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccHHHHHHHHHHcccEEcccccEEEEEEcccccccccHHHHHHHcHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccEEEEEcc
Coil and Loop (DISEMBL)
MREEKRNKLLILYASQTGNALDAAERIgreserrgcpvvvrpvddydarclpeedTVIFVVSttgqgdtpdsMKVFWRFLLQKSLSKQWLEGVRYAVfglgdsgyqKFNFVAKKLDNRLLDLGATAVverglgddqhpsgyegaldPWMRSLWRRLhqidpsffpqgpdhvieemklidqpkvhityHSIDNaasrlsnasdLEGIRMQLETARsmsagklsnynnKAVCFLKMiknqpltksgsgkdvhhFEFEFVSAAIEYEVGdvleilpsqdpaaVDTFIQrcnldpdalITVQHKEMknylpdihknttevpIKLRTFVELTMdvtsasprRYFFEVMSYFATAEHEKERLqyfaspegrddlyKYNQKERRTVLEVledfpsvqmpidwlvqlvpplktrafsisssplahpnqvHLTVSVVSwttpykrkrtglcsvwlagldpqqgiyipawfqkgslprpppsvpliligpgtgcapfrgFVEERaiqsssgpaapiifffgcrneddFLYRELWLSHslndgvfseakgggfyvafsrkqpqKVYVQHKMLEQSQRIWNLLLSKASIYVAgsatkmpsdvWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS
Flexible Loop (DISEMBL)
MREEKRNKLLILyasqtgnaldaaerigreserrgcpvvvrpvddydarclpeeDTVIFVVSttgqgdtpdSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVerglgddqhpsgYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETArsmsagklsNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYlpdihknttevpIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLqyfaspegrddlYKYNQKERRTVLEVledfpsvqmPIDWLVQLVPPLKTRAFSISssplahpnqvhLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSkegeasrdSAANWLKALQRAGRYHVEAWS
Low Complexity Region (SEG)
MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS
Disordered region (IsUnstruct)
********LLILYASQTGNAL************RGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDN*****************************SNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPR*PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV************NWLKALQRAGRY******
Disordered Region (DISOPRED)
*****RN***ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLE********************NNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEM*****DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGE*SRDSAANWLKALQRAGRYHVEAWS
Disordered Region (DISEMBL)
MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS
Disordered Region (DISPRO)
*****RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	628	2.2.26 [Sep-21-2011]
Q6NPS8	623	NADPH-dependent diflavin	yes	no	0.984	0.991	0.667	0.0
Q6PFP6	595	NADPH-dependent diflavin	yes	no	0.923	0.974	0.399	1e-117
Q9UHB4	597	NADPH-dependent diflavin	yes	no	0.933	0.981	0.401	1e-110
Q6NRG5	600	NADPH-dependent diflavin	N/A	no	0.944	0.988	0.351	1e-103
Q1JPJ0	577	NADPH-dependent diflavin	yes	no	0.896	0.975	0.380	1e-102
A2AI05	598	NADPH-dependent diflavin	yes	no	0.929	0.976	0.388	1e-101
Q54JL0	633	NADPH-dependent diflavin	yes	no	0.878	0.872	0.359	7e-95
O94613	584	Probable NADPH reductase	yes	no	0.910	0.979	0.326	7e-83
Q3SYT8	678	NADPH--cytochrome P450 re	no	no	0.933	0.864	0.300	2e-78
P16435	677	NADPH--cytochrome P450 re	no	no	0.931	0.864	0.307	6e-78

>sp|Q6NPS8|ATR3_ARATH NADPH-dependent diflavin oxidoreductase ATR3 OS=Arabidopsis thaliana GN=ATR3 PE=1 SV=1

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/628 (66%), Positives = 504/628 (80%), Gaps = 10/628 (1%)

Query: 4   EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPE-EDTVIFVVS 62
           EK+ KLL+LYASQTGNALDAAERIGRE+ERRG P  V   D++D   LP  E+ V+FVVS
Sbjct: 3   EKQRKLLVLYASQTGNALDAAERIGREAERRGLPASVVSTDEFDTSSLPHHEEAVVFVVS 62

Query: 63  TTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122
           TTGQGD+PDS K FWRFLLQ++L   WL+ VRYAVFGLGDSGYQK+NFVAKKLD RL DL
Sbjct: 63  TTGQGDSPDSFKAFWRFLLQRNLGNYWLQQVRYAVFGLGDSGYQKYNFVAKKLDKRLSDL 122

Query: 123 GATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPK 182
           GAT ++E+GLGDDQHPSGYEG LDPWM SLWR L+QI+P +FP+GPD  I + ++ID+PK
Sbjct: 123 GATTIIEKGLGDDQHPSGYEGTLDPWMLSLWRTLYQINPKYFPKGPDVKIPQDEVIDKPK 182

Query: 183 VHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTK 242
             I +H  +    +L + SD+      ++ AR MS GKL    +K  CFLKM +N+ LTK
Sbjct: 183 YRILFHKQEKLEPKLLSDSDI------IQRARGMSPGKLFKDKSKPDCFLKMTRNEVLTK 236

Query: 243 SGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEM 302
           + S KDV HFEF+FVS+ IEYEVGDV+E+LPSQ+ + VD FI+RC LDP++ ITV  +E 
Sbjct: 237 AESTKDVRHFEFQFVSSTIEYEVGDVVELLPSQNSSVVDAFIERCGLDPESFITVGPRET 296

Query: 303 KNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP 362
           +N      +  T++PIKL+TFVELTMDVTSASPRRYFFE+MS++ATAEHEKERLQYFASP
Sbjct: 297 ENSSFS-EEMITQIPIKLKTFVELTMDVTSASPRRYFFEIMSFYATAEHEKERLQYFASP 355

Query: 363 EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVH 422
           EGRDDLY YNQKERR++LEVLEDFPSVQ+P DWLVQLVPPLK RAFSISSSPLAHP  VH
Sbjct: 356 EGRDDLYNYNQKERRSILEVLEDFPSVQIPFDWLVQLVPPLKPRAFSISSSPLAHPAAVH 415

Query: 423 LTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 482
           LTVS+VSW TPYKR R GLCS WLA L P+Q + IP WF KGSLP P  S+PLIL+GPGT
Sbjct: 416 LTVSIVSWITPYKRTRKGLCSSWLASLAPEQEVNIPVWFHKGSLPAPSQSLPLILVGPGT 475

Query: 483 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGG 541
           GCAPFRGF+ ERA+Q+ S P AP++FFFGCRN+D DFLYR+ W SH+   G+ SE KGGG
Sbjct: 476 GCAPFRGFIAERAVQAQSSPVAPVMFFFGCRNKDTDFLYRDFWESHAREGGMLSEGKGGG 535

Query: 542 FYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKE 601
           FY AFSR QP+KVYVQHK+ E S+R+W+LL   A++YVAGS+TKMP DV S FE+IVS+E
Sbjct: 536 FYTAFSRDQPKKVYVQHKIREMSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEE 595

Query: 602 -GEASRDSAANWLKALQRAGRYHVEAWS 628
            G  S++ A+ WLKAL++ GRY+VEAWS
Sbjct: 596 TGGGSKEVASRWLKALEKTGRYNVEAWS 623

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c, but not cytochrome P450 in vitro. Required for embryo development. May participate to the control of cell death through its interaction with the DRE2 homolog At5g18400.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 9EC: 9EC: .EC: -

>sp|Q6PFP6|NDOR1_DANRE NADPH-dependent diflavin oxidoreductase 1 OS=Danio rerio GN=ndor1 PE=2 SV=1

 Score =  423 bits (1088), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 253/634 (39%), Positives = 358/634 (56%), Gaps = 54/634 (8%)

Query: 7   NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQ 66
           + +L+LY SQTG A D AERIGR+++RR   V V  +D Y+   L  E  V+FV +TTGQ
Sbjct: 4   HTVLVLYGSQTGTAQDTAERIGRQAQRRRLRVKVEALDTYNVVNLISESLVVFVCATTGQ 63

Query: 67  GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126
           GD PD+MK FWRFL +KSL    L  +  AV GLGDS Y KFNFVAKKL  RLL LGA  
Sbjct: 64  GDPPDNMKKFWRFLFRKSLPADSLSRLDCAVLGLGDSSYPKFNFVAKKLHKRLLQLGANM 123

Query: 127 VVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHIT 186
           ++  GL DDQH  G +G +DPW+ S W++   + P   P G   + EE KL   P  +I 
Sbjct: 124 LLPVGLADDQHDLGPDGVIDPWLLSFWQKTLSLYPP--PAGLAPLREEDKL---PPRYI- 177

Query: 187 YHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSG 246
           +H +    ++L+           L+T  + S+          + F     NQ +T +   
Sbjct: 178 FHFLSEVPNKLTE---------HLQTVDNKSSPTPLRPFPAPLVF-----NQRVTHTAHF 223

Query: 247 KDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYL 306
           +DV H EF+   + IE+  GD + + P      V+   Q   LDP++  T+   +     
Sbjct: 224 QDVRHIEFDITGSNIEFSAGDTVMMRPCNTSEDVEQLCQLLKLDPESYFTLTPTD----- 278

Query: 307 PDIHKNTTEVPIKL------RTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFA 360
                ++TEVP +L      R  +E  +D+ SA PRR FFE+++ FAT E E+E+L  F+
Sbjct: 279 -----SSTEVPARLPQPCSIRFLLEHFLDI-SAVPRRSFFELLATFATDELEQEKLLEFS 332

Query: 361 SPEGRDDLYKYNQKERRTVLEVLEDFP--SVQMPIDWLVQLVPPLKTRAFSISSSPLAHP 418
           S  G+D L+ Y  + RRT LEVL DFP  + ++ I  L+ L P ++ R+FSI+SS L HP
Sbjct: 333 SAAGQDTLHSYCNRPRRTALEVLTDFPHTTAELSIGRLLDLFPEIQPRSFSIASSLLEHP 392

Query: 419 NQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRPP-PSVPLI 476
           N++ + ++VV + T   + R GLCS WLA LDP +G +Y+P W +KGSL  P  P  P+I
Sbjct: 393 NRIQILLAVVKYKTMLVKPRKGLCSSWLASLDPSKGDVYVPLWVKKGSLKFPQDPESPVI 452

Query: 477 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFS 535
           ++GPGTG APFR  ++ER  Q   G  A ++ FFGCR+E  DF     W           
Sbjct: 453 MVGPGTGVAPFRSAIQERVAQ---GKMANVL-FFGCRSESKDFYCGSEWQEK-------V 501

Query: 536 EAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTF 594
           +A       AFSR Q  KVYVQH++ EQ + +W+L+  K A  Y+AG+A +MP+ V    
Sbjct: 502 QAGQMILVTAFSRDQEDKVYVQHRVKEQGKLLWDLIAKKNAFFYIAGNAKQMPTSVCDAL 561

Query: 595 EEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           + +  KEG  S + A   L  +++ GR+  E WS
Sbjct: 562 KAVFQKEGGMSENQAQEMLDGMEKNGRFQSETWS 595

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c and one-electron acceptors, such as doxorubicin, potassium ferricyanide and menadione (in vitro).

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q9UHB4|NDOR1_HUMAN NADPH-dependent diflavin oxidoreductase 1 OS=Homo sapiens GN=NDOR1 PE=1 SV=1

 Score =  400 bits (1028), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 252/628 (40%), Positives = 346/628 (55%), Gaps = 42/628 (6%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           +LL+L+ SQTG A D +ER+GRE+ RR     V+ +D Y    L  E  VIFV +TTGQG
Sbjct: 5   QLLVLFGSQTGTAQDVSERLGREARRRRLGCRVQALDSYPVVNLINEPLVIFVCATTGQG 64

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           D PD+MK FWRF+ +K+L    L  + +AV GLGDS Y KFNFVAKKL  RLL LG +A+
Sbjct: 65  DPPDNMKNFWRFIFRKNLPSTALCQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQLGGSAL 124

Query: 128 VERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITY 187
           +   LGDDQH  G + A+DPW+R LW R+  + P   P G   +   + L  +     T 
Sbjct: 125 LPVCLGDDQHELGPDAAVDPWLRDLWDRVLGLYPP--PPGLTEIPPGVPLPSK----FTL 178

Query: 188 HSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGK 247
             +  A S  S            E  R    G     +        MI NQ +T     +
Sbjct: 179 LFLQEAPSTGS------------EGQRVAHPGSQEPPSESKPFLAPMISNQRVTGPSHFQ 226

Query: 248 DVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLP 307
           DV   EF+ + + I +  GDV+ I PS   A V  F Q   LDPD L  +Q +E     P
Sbjct: 227 DVRLIEFDILGSGISFAAGDVVLIQPSNSAAHVQRFCQVLGLDPDQLFMLQPRE-----P 281

Query: 308 DIHKNT-TEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRD 366
           D+   T    P  +R  V   +D+ S  PRR FFE+++  +  E E+E+L  F+S +G++
Sbjct: 282 DVSSPTRLPQPCSMRHLVSHYLDIASV-PRRSFFELLACLSLHELEREKLLEFSSAQGQE 340

Query: 367 DLYKYNQKERRTVLEVLEDFP--SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLT 424
           +L++Y  + RRT+LEVL DFP  +  +P D+L+ L+P ++ RAFSI+SS L HP+++ + 
Sbjct: 341 ELFEYCNRPRRTILEVLCDFPHTAAAIPPDYLLDLIPVIRPRAFSIASSLLTHPSRLQIL 400

Query: 425 VSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRP-PPSVPLILIGPGT 482
           V+VV + T  K  R GLCS WLA LDP QG + +P W + GSL  P  P  P+I++GPGT
Sbjct: 401 VAVVQFQTRLKEPRRGLCSSWLASLDPGQGPVRVPLWVRPGSLAFPETPDTPVIMVGPGT 460

Query: 483 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGG 541
           G APFR  ++ER  Q  +G       FFGCR  D DF +   W      D +        
Sbjct: 461 GVAPFRAAIQERVAQGQTG----NFLFFGCRWRDQDFYWEAEWQELEKRDCL-------T 509

Query: 542 FYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSK 600
              AFSR+Q QKVYVQH++ E    +W LL  + A  Y+AG+A  MP+DV      I  +
Sbjct: 510 LIPAFSREQEQKVYVQHRLRELGSLVWELLDRQGAYFYLAGNAKSMPADVSEALMSIFQE 569

Query: 601 EGEASRDSAANWLKALQRAGRYHVEAWS 628
           EG      AA +L  LQ+  R+  E W+
Sbjct: 570 EGGLCSPDAAAYLARLQQTRRFQTETWA 597

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c and one-electron acceptors, such as doxorubicin, potassium ferricyanide and menadione (in vitro).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q6NRG5|NDOR1_XENLA NADPH-dependent diflavin oxidoreductase 1 OS=Xenopus laevis GN=ndor1 PE=2 SV=1

 Score =  377 bits (967), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/628 (35%), Positives = 337/628 (53%), Gaps = 35/628 (5%)

Query: 6   RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTG 65
           +  LLILY SQTG A D A R+ RE++R         +D+Y    L  E  VIFV +TTG
Sbjct: 3   QQNLLILYGSQTGTAEDLAGRLSREAKRHHFNCRTEALDEYRVANLINEHLVIFVCATTG 62

Query: 66  QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
           QGD PD+MK FWRF+ +++L    L  + YAV GLGDS Y KFNF+AKKL  RL  LGA 
Sbjct: 63  QGDPPDNMKNFWRFIFRRNLPHNALCQMDYAVLGLGDSSYPKFNFIAKKLHKRLNQLGAC 122

Query: 126 AVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHI 185
            ++   LGDDQH  G +  +DPW++ LW ++     S FP  P   I    ++  PK  +
Sbjct: 123 PLLPAALGDDQHELGPDAVVDPWLKDLWSKVL----SMFPLRPGLEIISEDVLLPPKYSL 178

Query: 186 TYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGS 245
                    S LS  +            R   +   +  +        ++ N+ ++    
Sbjct: 179 RLLEEKVGQSELSGDA----------YERDFISNNTTPPSEIHPFLAPVLSNERVSAHDH 228

Query: 246 GKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNY 305
            +DV   EF    +AI++  GDV+ + P      V+ F    +LDP   + V+  + ++ 
Sbjct: 229 FQDVRLIEFNITGSAIQFYPGDVVMVQPRNSLLHVEQFCSLLHLDPLNKVVVEPSDPESP 288

Query: 306 LPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGR 365
           +P +H         ++  VE  +D+ S  PRR FF++  +F+  E E+E+L+ F+   G+
Sbjct: 289 VP-MHLAAL---CSVQQLVERYLDICSI-PRRSFFQLFCHFSPDEMEREKLKEFSCAAGQ 343

Query: 366 DDLYKYNQKERRTVLEVLEDFPSVQ--MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHL 423
           ++LY Y  + RRT+LEVL DFP     +P  +L++L+P ++ RAFSI+SS  A PN + +
Sbjct: 344 EELYSYCNRPRRTILEVLVDFPHTTRCIPATFLLELIPQIRPRAFSIASSMEALPNTIQI 403

Query: 424 TVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PPSVPLILIGPGT 482
            ++VV + T     R GLCS WLA L P     +P W +KGS+  P  P  P++++GPGT
Sbjct: 404 LMAVVQYKTKLIEPRRGLCSTWLASLPPHGTERVPIWVKKGSMKFPCDPDTPVVMVGPGT 463

Query: 483 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGG 541
           G APFR  ++ER      G       FFGCR +  DF + + W     N G  +      
Sbjct: 464 GVAPFRAAIQERVANGRPGNC----LFFGCRGKSKDFYFEKEWEDLG-NRGYLT------ 512

Query: 542 FYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKAS-IYVAGSATKMPSDVWSTFEEIVSK 600
            + AFSR Q  K+YVQH++ E S+ +W+L+ +K   +Y+AG+A  MP++V    + ++  
Sbjct: 513 LFTAFSRDQEDKIYVQHRIKENSKLLWDLIGTKQGYVYIAGNAKLMPNEVTDALKWVLQL 572

Query: 601 EGEASRDSAANWLKALQRAGRYHVEAWS 628
           EG  S   A  +L +++++ R+  E WS
Sbjct: 573 EGGMSAPDAEQYLASMEKSCRFQSETWS 600

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c and one-electron acceptors, such as doxorubicin, potassium ferricyanide and menadione (in vitro).

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q1JPJ0|NDOR1_BOVIN NADPH-dependent diflavin oxidoreductase 1 (Fragment) OS=Bos taurus GN=NDOR1 PE=2 SV=1

 Score =  374 bits (959), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 230/605 (38%), Positives = 320/605 (52%), Gaps = 42/605 (6%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           +LL+L+ SQTG A D +ER+GRE+ RR     V  +D Y    L  E  VIFV +TTGQG
Sbjct: 5   RLLVLFGSQTGTAQDVSERLGREARRRQLSCRVEELDSYPVVNLINEPLVIFVCATTGQG 64

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           D PD+MK FWRF+ ++SL    L  + +AV GLGDS Y KFNFVAKKL  RLL LG +A+
Sbjct: 65  DPPDNMKSFWRFIFRRSLPSTALRQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQLGGSAL 124

Query: 128 VERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITY 187
           +   LGDDQH  G + A+DPW++ LW ++  + P   P   D     +    +  +    
Sbjct: 125 LPVCLGDDQHELGPDAAIDPWLQDLWEKV--LGPHPVPLNLDLSPPGVLWPSKFTLQFLK 182

Query: 188 HSIDNAASRLSNA-SDLEGIRMQLETARSMSAGKLSNYNNKAVCFLK-MIKNQPLTKSGS 245
            +  +    L  A +D +G   +L+                   FL  M+ NQ +T    
Sbjct: 183 DTPSSGPEELCAAGTDPQGPPSELQP------------------FLAPMVSNQRVTGPSH 224

Query: 246 GKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNY 305
            +DV   EF+   + I +  GD++ I P    + V  F Q   LDP+   T+Q +E    
Sbjct: 225 FQDVRLIEFDISGSGISFAAGDLVLIQPENTASHVQQFCQALGLDPEQHFTLQPREPGVT 284

Query: 306 LPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGR 365
            P         P  +R  V   +D+ S  PRR FFE+++  +  E E+E+L+ F S  G+
Sbjct: 285 CP----TRLPQPCSVRRLVSQYLDIASV-PRRSFFELLACLSPHELEREKLREFGSARGQ 339

Query: 366 DDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPP--LKTRAFSISSSPLAHPNQVHL 423
           ++L +Y  + RRT LEVL DFP     +     L     ++ RAFSI+SS  AHP+++H+
Sbjct: 340 EELCEYCTRPRRTALEVLCDFPHTAAAVPPDYLLDLLPLIRPRAFSIASSLRAHPSRLHI 399

Query: 424 TVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRP-PPSVPLILIGPG 481
            V+VV + T  +  R GLCS WLA LDP QG + +P W + G L  P  P VP+I++GPG
Sbjct: 400 LVAVVQYQTRLREPRRGLCSSWLASLDPAQGPVRVPLWVRSGGLTFPKTPDVPVIMVGPG 459

Query: 482 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGG 541
           TG APFR  ++ER  Q  +G     + FFGCR  D   Y E         G  +      
Sbjct: 460 TGVAPFRAAIQERVAQGETG----NVLFFGCRRRDQDFYWEAEWEQLQARGCLT------ 509

Query: 542 FYVAFSRKQPQKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSK 600
              AFSR+Q QKVYVQH++      +W LL    A  Y+AG+A  MP+DV  T   I  +
Sbjct: 510 LVTAFSREQEQKVYVQHRLRALGPLVWELLDGGGAHFYLAGNAKYMPADVCDTLLSIFRE 569

Query: 601 EGEAS 605
           EG  S
Sbjct: 570 EGGLS 574

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c and one-electron acceptors, such as doxorubicin, potassium ferricyanide and menadione (in vitro).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|A2AI05|NDOR1_MOUSE NADPH-dependent diflavin oxidoreductase 1 OS=Mus musculus GN=Ndor1 PE=2 SV=1

 Score =  371 bits (952), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 245/631 (38%), Positives = 340/631 (53%), Gaps = 47/631 (7%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           +LL+L+ SQTG A D AER+GRE+ RR     V+ +D Y    L  E  VIFV +TTGQG
Sbjct: 5   QLLVLFGSQTGTAQDEAERLGREARRRRLGCRVQALDSYSVANLIREPLVIFVCATTGQG 64

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           D PD+MK FWRF+ +KSL    L  + +AV GLGDS Y KFNFVAKKL  RLL LG +A+
Sbjct: 65  DPPDNMKNFWRFIFRKSLPSSSLCQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQLGGSAL 124

Query: 128 VERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF--PQGPDHVIEEMKLIDQPKVHI 185
           +   LGDDQH  G + A+DPW+  LW ++  + P     P+ P  V    K I Q     
Sbjct: 125 LPPCLGDDQHELGPDAAIDPWVGDLWEKIMVMYPVPLDIPEIPHGVPLPSKFIFQ----F 180

Query: 186 TYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGS 245
                   A  L+ AS          +A      +L  +         +I NQ +T    
Sbjct: 181 LQEVPSIGAEELNIAS----------SAPQTPPSELQPF------LAPVITNQRVTGPQH 224

Query: 246 GKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNY 305
            +DV   EF+   + I +  GDV+ ILPS   A    F Q   LDP+   T++ +E    
Sbjct: 225 FQDVRLIEFDITDSNISFAAGDVVFILPSNSEAHTQQFCQVLCLDPNQFFTLKPREPG-- 282

Query: 306 LPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGR 365
           +PD        P  +   V   +D+ S  PRR FFE+++  +    E+E+L   +S  G+
Sbjct: 283 VPD--PPGLPQPCTVWNLVSQYLDIASV-PRRSFFELLACLSQHALEREKLLELSSARGQ 339

Query: 366 DDLYKYNQKERRTVLEVLEDFPSVQ--MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHL 423
           ++L++Y  + RRT+LEVL DFP     +P D+L+ L+P ++ RAFSI+SS LAHP ++ +
Sbjct: 340 EELWEYCSRPRRTILEVLCDFPHTAGAIPPDYLLDLIPRIRPRAFSIASSLLAHPRRLQI 399

Query: 424 TVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG--IYIPAWFQKGSLPRP-PPSVPLILIGP 480
            V+VV + T  K  R GLCS WLA L+P Q   + +P W + GSL  P  P  P+I++G 
Sbjct: 400 LVAVVKYQTRLKEPRHGLCSSWLASLNPGQAGPVRVPLWVRPGSLVFPKTPDTPIIMVGA 459

Query: 481 GTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKG 539
           GTG APFR  ++ER     +G       FFGCR  D DF ++  W           E KG
Sbjct: 460 GTGVAPFRAAIQERVAHGQTG----NFLFFGCRQRDQDFYWQTEWQKL--------EQKG 507

Query: 540 G-GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEI 597
                 AFSR+Q QKVYVQH++ E    +W LL  + A  Y+AG+A  +P+DV      I
Sbjct: 508 WLTLVTAFSREQEQKVYVQHRLRELGPLVWELLDGQGAYFYLAGNAKYLPTDVSEALMSI 567

Query: 598 VSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
             +EG  S   A+ +L  LQ+  R+  E W+
Sbjct: 568 FQEEGRLSTADASAYLARLQQTLRFQTETWA 598

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c and one-electron acceptors, such as doxorubicin, potassium ferricyanide and menadione (in vitro).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q54JL0|NDOR1_DICDI NADPH-dependent diflavin oxidoreductase 1 OS=Dictyostelium discoideum GN=redC PE=2 SV=1

 Score =  348 bits (893), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 219/610 (35%), Positives = 338/610 (55%), Gaps = 58/610 (9%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K  I+YA+++G + + AE++ R+         +  V +Y+   LP E  VIFV+STTG G
Sbjct: 4   KCTIIYATESGTSQEVAEKLSRDLVLYEIKPRLIDVTNYNKLELPMEKIVIFVLSTTGHG 63

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           + PD MK  W FLL KSL    L   ++A+ GLGDS Y  +NF AKKL  RL  +G T +
Sbjct: 64  EVPDPMKPLWNFLLIKSLPSNSLANTKFAILGLGDSSYTTYNFAAKKLYQRLQSIGGTPL 123

Query: 128 VERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMK-LIDQPKVHIT 186
           + RG  DDQH  G +  ++ W + L  +L  I    +P  P+  I  +K  +++ K +I 
Sbjct: 124 LRRGDADDQHDLGIDYEVEKWSQELISKLLTI----YPLSPNFNINNIKNQLNKSKYNIK 179

Query: 187 YHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSG 246
              I        N ++ E I+ ++ T    S  K+               N+ +T     
Sbjct: 180 IDKI--------NENNKE-IKYEIPTQFYKSKLKV---------------NKRITVEEWE 215

Query: 247 KDVHHFEFEF-----VSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKE 301
           +DV H E +      +   I+Y+ GDV  +LP      V+ FI+   L  + +I    + 
Sbjct: 216 QDVRHIELDISECKELQVPIKYQSGDVAYVLPKNPIKRVNEFIELLGLHSNWII----ES 271

Query: 302 MKNYLPDIHKNTT--EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYF 359
           ++    +I ++ T  ++PI +   V    D+   SPRRYFFE++S+F T   EKERL++F
Sbjct: 272 IEPIDKEITQSPTLLKLPITIYDLVRCYFDIM-GSPRRYFFELLSHFVTNPIEKERLEFF 330

Query: 360 ASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPN 419
           +S EG+DDL  YNQKE+R  ++VL++FPS+++P ++L  L+PP+K R FSISSS L +PN
Sbjct: 331 SSTEGQDDLRTYNQKEKRNYIDVLKEFPSIEIPFEYLFDLIPPIKPRPFSISSSSLLNPN 390

Query: 420 QVHLTVSVVSWTTPYKRK-RTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPS--VPLI 476
            +HLTV + ++TTP++R  RTGLCS + +         I   F K S  R P S  +P+I
Sbjct: 391 TIHLTVGINTYTTPFRRLFRTGLCSQYFSSFLNDNDNNIVPIFIKESGARLPKSNEIPII 450

Query: 477 LIGPGTGCAPFRGFVEERAI----QSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLND 531
           ++GPGTGCA FR F++ER        ++      +F+FGCR+E  D+ YR+ + S+ L  
Sbjct: 451 MVGPGTGCAIFRSFMQERLYFKNNSDNNNKLGDALFYFGCRSESKDYYYRDEFESN-LEK 509

Query: 532 GVFSEAKGGGFYVAFSR--KQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPS 588
           G+ S+       VAFSR  K  +KVYVQ  +   S  IW+++ ++    Y++GS+ +MP 
Sbjct: 510 GIISKLS-----VAFSRDGKDGKKVYVQQYIENDSDLIWDIINNRNGYFYISGSSGRMPK 564

Query: 589 DVWSTFEEIV 598
           DV  +   I+
Sbjct: 565 DVKQSLLTII 574

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c and one-electron acceptors.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|O94613|TAH18_SCHPO Probable NADPH reductase TAH18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tah18 PE=3 SV=2

 Score =  308 bits (790), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 207/634 (32%), Positives = 317/634 (50%), Gaps = 62/634 (9%)

Query: 5   KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTT 64
           K + + ILY S+TG A   AE + R   R G  V+V  +DD++   L      +F+ STT
Sbjct: 2   KNSHIYILYGSETGTAEGLAESLFRSLTRMGYDVLVNSMDDFNLENLLRPLQCVFICSTT 61

Query: 65  GQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGA 124
           GQG+ P +M+ FWRFLL+K L   +L  ++YAVFG GD+ Y +FN+ +KKLD+RL  LGA
Sbjct: 62  GQGEMPLNMRKFWRFLLRKKLPNTFLNDMQYAVFGCGDTSYTRFNWASKKLDSRLRQLGA 121

Query: 125 TAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVH 184
            +   RG GD+QHP G EG    W   L+ +L  I     P  P     E  L+  P   
Sbjct: 122 QSFSSRGEGDEQHPDGVEGVFAYWCNHLYSQLAAIKT---PSRP--AFGEFDLL-PPSFQ 175

Query: 185 ITYHSIDNA-ASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKS 243
           I    ID +   ++    D   +R         S GK+            ++ N+ ++  
Sbjct: 176 II---IDESLGCKVKGFEDNNIVRH--------SRGKIE---------ATLVHNKRISNI 215

Query: 244 GSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDP----DALITVQH 299
              +DV H  F+ +     ++ GDV  + P  D  +V++FI+    +       +I+   
Sbjct: 216 KHWQDVRHLAFK-IPNFERWKPGDVAVLYPWNDDMSVNSFIECMGWESIKYSPLIISSNV 274

Query: 300 KEMK-NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQY 358
            E K  + P+I        + +   V+  + + S  P R FFE+ S+F+  +  KERLQ 
Sbjct: 275 AERKLPWFPNI--------LNVFNLVKYVLSIHSV-PSRTFFEMASHFSNNKMHKERLQE 325

Query: 359 FASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHP 418
           F+S +  DD Y Y  + RRTVLE L++F SVQ+PI++ +   P ++ R +SI++      
Sbjct: 326 FSSYKNIDDYYDYTTRPRRTVLETLQEFKSVQIPIEYALDAFPVIRGRQYSIANRCDNST 385

Query: 419 NQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI---PAWFQKGSLPRPPPSVPL 475
             + L V++V + T  K  R G+CS W+  L       I   P +           + PL
Sbjct: 386 GILELAVALVKYQTILKSPRQGICSRWICDLHENTSFNIDILPGFLNLSY----QSNKPL 441

Query: 476 ILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVF 534
           I++GPGTG AP R  ++ER            + FFGCRN+  DFL+ + W         +
Sbjct: 442 IMVGPGTGVAPLRALIQERIYNG----LKENLLFFGCRNKSMDFLFEKDWEK-------Y 490

Query: 535 SEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASI-YVAGSATKMPSDVWST 593
           +E      + AFSR Q +K YVQH + E  + ++NLL  K  + +V+GS+ KMPS V   
Sbjct: 491 TEEGTLKLFCAFSRDQEKKKYVQHSIQENGELVYNLLNEKDGMFFVSGSSGKMPSSVKDA 550

Query: 594 FEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
              IVSK    S     +++ +L++  RY+ E W
Sbjct: 551 IAGIVSKYSGCSISDGYSFVTSLEKKNRYYQETW 584

Probable oxidoreductase which may be involved in DNA replication.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q3SYT8|NCPR_BOVIN NADPH--cytochrome P450 reductase OS=Bos taurus GN=POR PE=2 SV=3

 Score =  293 bits (751), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 195/648 (30%), Positives = 322/648 (49%), Gaps = 62/648 (9%)

Query: 1   MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA---RCLPE--ED 55
           M++  RN +++ Y SQTG A + A R+ +++ R G   +    ++YD      LPE  + 
Sbjct: 73  MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMAADPEEYDLADLSSLPEIEKA 131

Query: 56  TVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
             IF ++T G+GD  D+ + F+ +L +  +    L GV+YAVF LG+  Y+ FN + K +
Sbjct: 132 LAIFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKYAVFALGNKTYEHFNAMGKYV 188

Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEM 175
           D RL  LGA  + + GLGDD      E     W    W  + +        G +  I + 
Sbjct: 189 DKRLEQLGAQRIFDLGLGDDD--GNLEEDFITWREQFWPAVCE-HFGVEATGEESSIRQY 245

Query: 176 KLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKA------V 229
           +L+    VH                       M +    +   G+L +Y N+        
Sbjct: 246 ELM----VHTD---------------------MDMAKVYTGEMGRLKSYENQKPPFDAKN 280

Query: 230 CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNL 289
            FL ++        G+ + + H E +   + I YE GD + + P+ D A V+   +    
Sbjct: 281 PFLAVVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGEILGA 340

Query: 290 DPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFAT- 348
           D D ++++ + + ++      K+    P   RT +   +D+T+       +E+  Y +  
Sbjct: 341 DLDIIMSLNNLDEESN----KKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEP 396

Query: 349 AEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAF 408
            EHE+ R    +S EG++   ++  + RR +L +L+D+PS++ PID L +L+P L+ R +
Sbjct: 397 TEHEQLRKMASSSGEGKELYLRWVLEARRHILAILQDYPSLRPPIDHLCELLPRLQARYY 456

Query: 409 SISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKG 464
           SI+SS   HPN VH+    V + T   R   G+ + WL   +P  + G    +P + +K 
Sbjct: 457 SIASSSKVHPNSVHICAVAVEYETKTGRINKGVATSWLRAKEPAGENGGRALVPMYVRKS 516

Query: 465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYR 521
               P   + P+I++GPGTG APF GF++ERA ++         + ++GCR  D D+LYR
Sbjct: 517 QFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYR 576

Query: 522 ELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLL-SKASIYVA 580
           E  L+    DG  ++       VAFSR+QPQKVYVQH + +  + +W L+    A IYV 
Sbjct: 577 E-ELAGFHKDGALTQLN-----VAFSREQPQKVYVQHLLKKDKEHLWKLIHEGGAHIYVC 630

Query: 581 GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           G A  M  DV +TF +IV+++G      A +++K L   GRY ++ WS
Sbjct: 631 GDARNMARDVQNTFYDIVAEQGAMEHAQAVDYVKKLMTKGRYSLDVWS 678

This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 4

>sp|P16435|NCPR_HUMAN NADPH--cytochrome P450 reductase OS=Homo sapiens GN=POR PE=1 SV=2

 Score =  292 bits (747), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 199/648 (30%), Positives = 318/648 (49%), Gaps = 63/648 (9%)

Query: 1   MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
           M++  RN +++ Y SQTG A + A R+ +++ R   RG        D  D   LPE D  
Sbjct: 73  MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNA 131

Query: 57  -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
            V+F ++T G+GD  D+ + F+ +L +  +    L GV++AVFGLG+  Y+ FN + K +
Sbjct: 132 LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYV 188

Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEM 175
           D RL  LGA  + E GLGDD      E     W    W       P+           E 
Sbjct: 189 DKRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFW-------PAVCEHFGVEATGEE 239

Query: 176 KLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKA------V 229
             I Q ++ + +  ID A   +                     G+L +Y N+        
Sbjct: 240 SSIRQYEL-VVHTDIDAAKVYMG------------------EMGRLKSYENQKPPFDAKN 280

Query: 230 CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNL 289
            FL  +        G+ + + H E +   + I YE GD + + P+ D A V+   +    
Sbjct: 281 PFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGA 340

Query: 290 DPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATA 349
           D D ++++ + + ++      K+    P   RT +   +D+T+  PR      ++ +A+ 
Sbjct: 341 DLDVVMSLNNLDEESN----KKHPFPCPTSYRTALTYYLDITNP-PRTNVLYELAQYASE 395

Query: 350 EHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRA 407
             E+E L+  AS   EG++    +  + RR +L +L+D PS++ PID L +L+P L+ R 
Sbjct: 396 PSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARY 455

Query: 408 FSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQK 463
           +SI+SS   HPN VH+   VV + T   R   G+ + WL   +P  + G    +P + +K
Sbjct: 456 YSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPAGENGGRALVPMFVRK 515

Query: 464 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLY 520
                P   + P+I++GPGTG APF GF++ERA ++         + ++GCR  D D+LY
Sbjct: 516 SQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLY 575

Query: 521 RELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVA 580
           RE  L+    DG  ++       VAFSR+Q  KVYVQH + +  + +W L+   A IYV 
Sbjct: 576 RE-ELAQFHRDGALTQLN-----VAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVC 629

Query: 581 GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           G A  M  DV +TF +IV++ G      A +++K L   GRY ++ WS
Sbjct: 630 GDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 677

This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	628
225452009	631	PREDICTED: NADPH-dependent diflavin oxid	0.998	0.993	0.737	0.0
224077154	632	nadph-cytochrome P450 oxydoreductase [Po	0.988	0.982	0.735	0.0
359488269	636	PREDICTED: NADPH-dependent diflavin oxid	0.998	0.985	0.731	0.0
296087289	632	unnamed protein product [Vitis vinifera]	0.998	0.992	0.731	0.0
356569082	631	PREDICTED: NADPH-dependent diflavin oxid	0.977	0.973	0.696	0.0
356569080	617	PREDICTED: NADPH-dependent diflavin oxid	0.972	0.990	0.704	0.0
255580311	621	NADPH fad oxidoreductase, putative [Rici	0.984	0.995	0.722	0.0
449519236	622	PREDICTED: LOW QUALITY PROTEIN: NADPH-de	0.980	0.990	0.704	0.0
90657547	630	hypothetical protein [Cleome spinosa]	0.993	0.990	0.686	0.0
449458325	629	PREDICTED: NADPH-dependent diflavin oxid	0.980	0.979	0.694	0.0

>gi|225452009|ref|XP_002280059.1| PREDICTED: NADPH-dependent diflavin oxidoreductase 1-like isoform 1 [Vitis vinifera]

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/628 (73%), Positives = 531/628 (84%), Gaps = 1/628 (0%)

Query: 2   REEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVV 61
           RE+++ KLLILYASQTGNALDAAERI RE+ERRGCPV +  +D ++A  LP E+ VIFVV
Sbjct: 4   REKQKQKLLILYASQTGNALDAAERIAREAERRGCPVTLLSIDCFNAGSLPYEENVIFVV 63

Query: 62  STTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121
           STTGQGDTPDSMK FW+FLLQ++LS++WLEGV YAVFGLGDSGYQK+NFVAKKLD RLLD
Sbjct: 64  STTGQGDTPDSMKAFWKFLLQRNLSQRWLEGVHYAVFGLGDSGYQKYNFVAKKLDKRLLD 123

Query: 122 LGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQP 181
           LGA A+VERGLGDDQHPSGYEGALDPWM SLW  L +++P FFP G D +I++  LID P
Sbjct: 124 LGAVAIVERGLGDDQHPSGYEGALDPWMSSLWNTLSKMNPKFFPNGIDFLIQDAHLIDPP 183

Query: 182 KVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLT 241
           KV ITYH +D   S  S  SDL+ I MQ+E  RSM  GK S   N+  CFL+M++N  LT
Sbjct: 184 KVQITYHDVDKVHSHFSTDSDLKCIEMQIERVRSMHPGKFSRDKNRPDCFLRMVENHSLT 243

Query: 242 KSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKE 301
           ++G  K+V H EFE +S+AIEY VGD++E+LPSQ P A+DTFIQRCNL+P++ ITV  +E
Sbjct: 244 RAGCEKNVLHIEFEVLSSAIEYAVGDIVEVLPSQSPIAIDTFIQRCNLNPESFITVHPRE 303

Query: 302 MKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFAS 361
           M+N+LP+ + N +++PIKL+TFVELTMDV SASPRRYFFEVMS+FATAEHEKERLQYFAS
Sbjct: 304 MENHLPNANINDSKIPIKLKTFVELTMDVASASPRRYFFEVMSFFATAEHEKERLQYFAS 363

Query: 362 PEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQV 421
           PEGRDDLY+YNQ+ERRTVLEVLEDFPSVQMP +WLVQLVPPLK RA+SISSS LAHPNQ+
Sbjct: 364 PEGRDDLYQYNQRERRTVLEVLEDFPSVQMPFEWLVQLVPPLKKRAYSISSSQLAHPNQL 423

Query: 422 HLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPG 481
           HLTV+V  WTTP+KRKRTGLCS WLAGLDPQQG+ IPAWF KGSLP PPPS+PLILIGPG
Sbjct: 424 HLTVNVTPWTTPFKRKRTGLCSKWLAGLDPQQGVIIPAWFIKGSLPAPPPSLPLILIGPG 483

Query: 482 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGG 540
           TGCAPFRGFVEERAIQS SG  AP++FFFGC NED DFLYR+ WLSHS N GV SE KGG
Sbjct: 484 TGCAPFRGFVEERAIQSRSGSTAPVLFFFGCWNEDNDFLYRDFWLSHSRNGGVLSEEKGG 543

Query: 541 GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSK 600
           GF VAFSR QP KVYVQHKM E SQRIWNLL   ASIYVAGS+TKMPSDV+S FEEIVSK
Sbjct: 544 GFCVAFSRDQPHKVYVQHKMRENSQRIWNLLCEGASIYVAGSSTKMPSDVFSCFEEIVSK 603

Query: 601 EGEASRDSAANWLKALQRAGRYHVEAWS 628
           E    R+SA  WL+AL+RAGRYHVEAWS
Sbjct: 604 ENGVPRESAVRWLRALERAGRYHVEAWS 631

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077154|ref|XP_002305157.1| nadph-cytochrome P450 oxydoreductase [Populus trichocarpa] gi|222848121|gb|EEE85668.1| nadph-cytochrome P450 oxydoreductase [Populus trichocarpa]

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/636 (73%), Positives = 531/636 (83%), Gaps = 15/636 (2%)

Query: 3   EEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVS 62
           E++  KLLILYA+QTGNALDAAERIGRE+ERRGC   VR +DD+DA  LP EDTVIFVVS
Sbjct: 2   EKEPAKLLILYATQTGNALDAAERIGREAERRGCAASVRSIDDFDASSLPHEDTVIFVVS 61

Query: 63  TTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122
           TTGQGDTPDSMK FW++LL ++++K WLEGV YAVFGLGDSGYQK+NFVAKKLD R+ DL
Sbjct: 62  TTGQGDTPDSMKSFWKYLLLRNIAKNWLEGVHYAVFGLGDSGYQKYNFVAKKLDRRISDL 121

Query: 123 GATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPK 182
           GATAVVERGLGDDQHPSGYEGALDPWM SLW  L+QI+P FFP GPD VI + KLI+QPK
Sbjct: 122 GATAVVERGLGDDQHPSGYEGALDPWMSSLWSMLYQINPKFFPNGPDFVISDTKLINQPK 181

Query: 183 VHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTK 242
             ITYH ID    + S+A  L+ ++MQ   ARSMS GK+S+  N   CFLKMIKNQPL +
Sbjct: 182 FQITYHEIDKVDLQSSSAPGLDHVQMQTGRARSMSPGKVSHIKNIPDCFLKMIKNQPLCR 241

Query: 243 SGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEM 302
           +G GKDV HFEFEFVS+ IEY VGDVLE+LP QDPAAVD F+Q CNL+P++LITV  K+ 
Sbjct: 242 AGCGKDVRHFEFEFVSSIIEYGVGDVLEVLPGQDPAAVDAFLQCCNLNPESLITVMPKDS 301

Query: 303 K----NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFE-----VMSYFATAEHEK 353
           +    + LP        +PIKL+TFVELTMD+ SASPRRYFFE     VMSYFATAEHEK
Sbjct: 302 QTSSTSTLP-----IEGIPIKLKTFVELTMDIASASPRRYFFEARMLYVMSYFATAEHEK 356

Query: 354 ERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSS 413
           ERLQYFASPEGRDDLY+YNQKERRTVLEVLEDFPSVQMP +WLVQLVPPLKTRAFSISSS
Sbjct: 357 ERLQYFASPEGRDDLYQYNQKERRTVLEVLEDFPSVQMPFEWLVQLVPPLKTRAFSISSS 416

Query: 414 PLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSV 473
           P AHPNQVHLTV+VVSWTTP+KRKRTGLCS WLAGLDPQ G+YIPAWF KGSLP PPPS+
Sbjct: 417 PSAHPNQVHLTVNVVSWTTPFKRKRTGLCSTWLAGLDPQDGVYIPAWFCKGSLPPPPPSI 476

Query: 474 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRN-EDDFLYRELWLSHSLNDG 532
           PL+L+GPGTGCAPFRGFVEERAIQ  SG AAPI+ FFGCRN E+DFLY++ WLSH+ N G
Sbjct: 477 PLVLVGPGTGCAPFRGFVEERAIQDMSGSAAPIMLFFGCRNQENDFLYKDFWLSHAQNSG 536

Query: 533 VFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWS 592
             S A+GGGFYVAFSR QPQKVYVQHKM EQSQR+WNLL+  ASIYV+GS+TKMPSDV S
Sbjct: 537 PLSIARGGGFYVAFSRDQPQKVYVQHKMREQSQRVWNLLVEGASIYVSGSSTKMPSDVMS 596

Query: 593 TFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
             EEI+SKE   SR++A   L+ L++ GRYHVEAWS
Sbjct: 597 ALEEIISKEAGVSRETAVLQLRRLEKDGRYHVEAWS 632

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488269|ref|XP_003633729.1| PREDICTED: NADPH-dependent diflavin oxidoreductase 1-like isoform 2 [Vitis vinifera]

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/633 (73%), Positives = 531/633 (83%), Gaps = 6/633 (0%)

Query: 2   REEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVV 61
           RE+++ KLLILYASQTGNALDAAERI RE+ERRGCPV +  +D ++A  LP E+ VIFVV
Sbjct: 4   REKQKQKLLILYASQTGNALDAAERIAREAERRGCPVTLLSIDCFNAGSLPYEENVIFVV 63

Query: 62  STTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121
           STTGQGDTPDSMK FW+FLLQ++LS++WLEGV YAVFGLGDSGYQK+NFVAKKLD RLLD
Sbjct: 64  STTGQGDTPDSMKAFWKFLLQRNLSQRWLEGVHYAVFGLGDSGYQKYNFVAKKLDKRLLD 123

Query: 122 LGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQP 181
           LGA A+VERGLGDDQHPSGYEGALDPWM SLW  L +++P FFP G D +I++  LID P
Sbjct: 124 LGAVAIVERGLGDDQHPSGYEGALDPWMSSLWNTLSKMNPKFFPNGIDFLIQDAHLIDPP 183

Query: 182 KVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLT 241
           KV ITYH +D   S  S  SDL+ I MQ+E  RSM  GK S   N+  CFL+M++N  LT
Sbjct: 184 KVQITYHDVDKVHSHFSTDSDLKCIEMQIERVRSMHPGKFSRDKNRPDCFLRMVENHSLT 243

Query: 242 KSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKE 301
           ++G  K+V H EFE +S+AIEY VGD++E+LPSQ P A+DTFIQRCNL+P++ ITV  +E
Sbjct: 244 RAGCEKNVLHIEFEVLSSAIEYAVGDIVEVLPSQSPIAIDTFIQRCNLNPESFITVHPRE 303

Query: 302 MKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFE-----VMSYFATAEHEKERL 356
           M+N+LP+ + N +++PIKL+TFVELTMDV SASPRRYFFE     VMS+FATAEHEKERL
Sbjct: 304 MENHLPNANINDSKIPIKLKTFVELTMDVASASPRRYFFEARILYVMSFFATAEHEKERL 363

Query: 357 QYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLA 416
           QYFASPEGRDDLY+YNQ+ERRTVLEVLEDFPSVQMP +WLVQLVPPLK RA+SISSS LA
Sbjct: 364 QYFASPEGRDDLYQYNQRERRTVLEVLEDFPSVQMPFEWLVQLVPPLKKRAYSISSSQLA 423

Query: 417 HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLI 476
           HPNQ+HLTV+V  WTTP+KRKRTGLCS WLAGLDPQQG+ IPAWF KGSLP PPPS+PLI
Sbjct: 424 HPNQLHLTVNVTPWTTPFKRKRTGLCSKWLAGLDPQQGVIIPAWFIKGSLPAPPPSLPLI 483

Query: 477 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFS 535
           LIGPGTGCAPFRGFVEERAIQS SG  AP++FFFGC NED DFLYR+ WLSHS N GV S
Sbjct: 484 LIGPGTGCAPFRGFVEERAIQSRSGSTAPVLFFFGCWNEDNDFLYRDFWLSHSRNGGVLS 543

Query: 536 EAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFE 595
           E KGGGF VAFSR QP KVYVQHKM E SQRIWNLL   ASIYVAGS+TKMPSDV+S FE
Sbjct: 544 EEKGGGFCVAFSRDQPHKVYVQHKMRENSQRIWNLLCEGASIYVAGSSTKMPSDVFSCFE 603

Query: 596 EIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           EIVSKE    R+SA  WL+AL+RAGRYHVEAWS
Sbjct: 604 EIVSKENGVPRESAVRWLRALERAGRYHVEAWS 636

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087289|emb|CBI33663.3| unnamed protein product [Vitis vinifera]

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/629 (73%), Positives = 529/629 (84%), Gaps = 2/629 (0%)

Query: 2   REEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVV 61
           RE+++ KLLILYASQTGNALDAAERI RE+ERRGCPV +  +D ++A  LP E+ VIFVV
Sbjct: 4   REKQKQKLLILYASQTGNALDAAERIAREAERRGCPVTLLSIDCFNAGSLPYEENVIFVV 63

Query: 62  STTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121
           STTGQGDTPDSMK FW+FLLQ++LS++WLEGV YAVFGLGDSGYQK+NFVAKKLD RLLD
Sbjct: 64  STTGQGDTPDSMKAFWKFLLQRNLSQRWLEGVHYAVFGLGDSGYQKYNFVAKKLDKRLLD 123

Query: 122 LGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQP 181
           LGA A+VERGLGDDQHPSGYEGALDPWM SLW  L +++P FFP G D +I++  LID P
Sbjct: 124 LGAVAIVERGLGDDQHPSGYEGALDPWMSSLWNTLSKMNPKFFPNGIDFLIQDAHLIDPP 183

Query: 182 KVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLT 241
           KV ITYH +D   S  S  SDL+ I MQ+E  RSM  GK S   N+  CFL+M++N  LT
Sbjct: 184 KVQITYHDVDKVHSHFSTDSDLKCIEMQIERVRSMHPGKFSRDKNRPDCFLRMVENHSLT 243

Query: 242 KSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKE 301
           ++G  K+V H EFE +S+AIEY VGD++E+LPSQ P A+DTFIQRCNL+P++ ITV  +E
Sbjct: 244 RAGCEKNVLHIEFEVLSSAIEYAVGDIVEVLPSQSPIAIDTFIQRCNLNPESFITVHPRE 303

Query: 302 MKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEV-MSYFATAEHEKERLQYFA 360
           M+N+LP+ + N +++PIKL+TFVELTMDV SASPRRYFFE  + +FATAEHEKERLQYFA
Sbjct: 304 MENHLPNANINDSKIPIKLKTFVELTMDVASASPRRYFFEARILFFATAEHEKERLQYFA 363

Query: 361 SPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQ 420
           SPEGRDDLY+YNQ+ERRTVLEVLEDFPSVQMP +WLVQLVPPLK RA+SISSS LAHPNQ
Sbjct: 364 SPEGRDDLYQYNQRERRTVLEVLEDFPSVQMPFEWLVQLVPPLKKRAYSISSSQLAHPNQ 423

Query: 421 VHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGP 480
           +HLTV+V  WTTP+KRKRTGLCS WLAGLDPQQG+ IPAWF KGSLP PPPS+PLILIGP
Sbjct: 424 LHLTVNVTPWTTPFKRKRTGLCSKWLAGLDPQQGVIIPAWFIKGSLPAPPPSLPLILIGP 483

Query: 481 GTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKG 539
           GTGCAPFRGFVEERAIQS SG  AP++FFFGC NED DFLYR+ WLSHS N GV SE KG
Sbjct: 484 GTGCAPFRGFVEERAIQSRSGSTAPVLFFFGCWNEDNDFLYRDFWLSHSRNGGVLSEEKG 543

Query: 540 GGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVS 599
           GGF VAFSR QP KVYVQHKM E SQRIWNLL   ASIYVAGS+TKMPSDV+S FEEIVS
Sbjct: 544 GGFCVAFSRDQPHKVYVQHKMRENSQRIWNLLCEGASIYVAGSSTKMPSDVFSCFEEIVS 603

Query: 600 KEGEASRDSAANWLKALQRAGRYHVEAWS 628
           KE    R+SA  WL+AL+RAGRYHVEAWS
Sbjct: 604 KENGVPRESAVRWLRALERAGRYHVEAWS 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569082|ref|XP_003552735.1| PREDICTED: NADPH-dependent diflavin oxidoreductase 1-like isoform 2 [Glycine max]

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/633 (69%), Positives = 511/633 (80%), Gaps = 19/633 (3%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           KLLILYASQTGNALDAAER+ RE+ERR CP  +  VD YD   LP+E+ VIFVVSTTGQG
Sbjct: 6   KLLILYASQTGNALDAAERLSREAERRACPFNLLSVDQYDPSLLPQEEAVIFVVSTTGQG 65

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           DTPDSMKVFWR+LLQ++L ++WL GV YAVFGLGDS YQK+NFVAKKLD RL+DLG T +
Sbjct: 66  DTPDSMKVFWRYLLQRNLGQRWLSGVLYAVFGLGDSSYQKYNFVAKKLDKRLMDLGGTTI 125

Query: 128 VERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITY 187
           VERGLGDDQHPSGYE +LDPW+ SLWR L+ + P F P GPD VI++  LIDQPKV ITY
Sbjct: 126 VERGLGDDQHPSGYEASLDPWLSSLWRMLNMVKPEFLPNGPDVVIQDTVLIDQPKVRITY 185

Query: 188 HSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGK 247
           H+I N  S  S+ASDL  + MQ+ +ARSM  GK S+  ++  CFLKM+KN PLT+S  GK
Sbjct: 186 HNIANDESHFSSASDLTCLNMQIGSARSMHPGKSSSDRSRPGCFLKMVKNLPLTRSNCGK 245

Query: 248 DVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLP 307
           DV HFEFEFVS  ++YE GDVLE+LP QD AAVD FI+RCNLDPD+ ITV+       + 
Sbjct: 246 DVRHFEFEFVSHVLKYETGDVLEVLPGQDSAAVDAFIRRCNLDPDSFITVK-------MD 298

Query: 308 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFE-----------VMSYFATAEHEKERL 356
           D + + + +P+KLRTFVE +MDV SASPRRY FE           VMS+FATAEHE+ERL
Sbjct: 299 DHNTHDSRIPVKLRTFVEFSMDVASASPRRYLFEVRCSNNNVMFQVMSFFATAEHERERL 358

Query: 357 QYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLA 416
           +YFASPEGRDDLY+YNQKERRTVLEVLEDFPSVQMP +WLVQLVPPLK RAFSISSS  A
Sbjct: 359 KYFASPEGRDDLYQYNQKERRTVLEVLEDFPSVQMPFEWLVQLVPPLKPRAFSISSSQSA 418

Query: 417 HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLI 476
           HPNQVHLTV+VVSWTTPYKRK+ GLCS WLA LDP  GI++P WF KG LP P PS+PLI
Sbjct: 419 HPNQVHLTVNVVSWTTPYKRKKKGLCSSWLAALDPCDGIHVPTWFHKGLLPTPSPSLPLI 478

Query: 477 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFS 535
           L+GPGTGCAPFRGF+EERA+QS +   APIIFFFGC NED DFLYR+ WLSHS N GV S
Sbjct: 479 LVGPGTGCAPFRGFIEERAVQSRTNSTAPIIFFFGCWNEDGDFLYRDFWLSHSQNKGVLS 538

Query: 536 EAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFE 595
           EAKGGGFYVAFSR QPQKVYVQHKM EQSQRIWNLL   A++Y+AGS+TKMP+DV S FE
Sbjct: 539 EAKGGGFYVAFSRDQPQKVYVQHKMREQSQRIWNLLAEGAAVYIAGSSTKMPADVTSAFE 598

Query: 596 EIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           EIVS E E S + A  W++AL++ G++H+EAWS
Sbjct: 599 EIVSYENEVSAEDAVRWIRALEKCGKFHIEAWS 631

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569080|ref|XP_003552734.1| PREDICTED: NADPH-dependent diflavin oxidoreductase 1-like isoform 1 [Glycine max]

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/622 (70%), Positives = 507/622 (81%), Gaps = 11/622 (1%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           KLLILYASQTGNALDAAER+ RE+ERR CP  +  VD YD   LP+E+ VIFVVSTTGQG
Sbjct: 6   KLLILYASQTGNALDAAERLSREAERRACPFNLLSVDQYDPSLLPQEEAVIFVVSTTGQG 65

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           DTPDSMKVFWR+LLQ++L ++WL GV YAVFGLGDS YQK+NFVAKKLD RL+DLG T +
Sbjct: 66  DTPDSMKVFWRYLLQRNLGQRWLSGVLYAVFGLGDSSYQKYNFVAKKLDKRLMDLGGTTI 125

Query: 128 VERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITY 187
           VERGLGDDQHPSGYE +LDPW+ SLWR L+ + P F P GPD VI++  LIDQPKV ITY
Sbjct: 126 VERGLGDDQHPSGYEASLDPWLSSLWRMLNMVKPEFLPNGPDVVIQDTVLIDQPKVRITY 185

Query: 188 HSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGK 247
           H+I N  S  S+AS +         ARSM  GK S+  ++  CFLKM+KN PLT+S  GK
Sbjct: 186 HNIANDESHFSSASGIPNF------ARSMHPGKSSSDRSRPGCFLKMVKNLPLTRSNCGK 239

Query: 248 DVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLP 307
           DV HFEFEFVS  ++YE GDVLE+LP QD AAVD FI+RCNLDPD+ ITV  +EM ++  
Sbjct: 240 DVRHFEFEFVSHVLKYETGDVLEVLPGQDSAAVDAFIRRCNLDPDSFITVSLREMDDH-- 297

Query: 308 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDD 367
             + + + +P+KLRTFVE +MDV SASPRRY FEVMS+FATAEHE+ERL+YFASPEGRDD
Sbjct: 298 --NTHDSRIPVKLRTFVEFSMDVASASPRRYLFEVMSFFATAEHERERLKYFASPEGRDD 355

Query: 368 LYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSV 427
           LY+YNQKERRTVLEVLEDFPSVQMP +WLVQLVPPLK RAFSISSS  AHPNQVHLTV+V
Sbjct: 356 LYQYNQKERRTVLEVLEDFPSVQMPFEWLVQLVPPLKPRAFSISSSQSAHPNQVHLTVNV 415

Query: 428 VSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPF 487
           VSWTTPYKRK+ GLCS WLA LDP  GI++P WF KG LP P PS+PLIL+GPGTGCAPF
Sbjct: 416 VSWTTPYKRKKKGLCSSWLAALDPCDGIHVPTWFHKGLLPTPSPSLPLILVGPGTGCAPF 475

Query: 488 RGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 546
           RGF+EERA+QS +   APIIFFFGC NED DFLYR+ WLSHS N GV SEAKGGGFYVAF
Sbjct: 476 RGFIEERAVQSRTNSTAPIIFFFGCWNEDGDFLYRDFWLSHSQNKGVLSEAKGGGFYVAF 535

Query: 547 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASR 606
           SR QPQKVYVQHKM EQSQRIWNLL   A++Y+AGS+TKMP+DV S FEEIVS E E S 
Sbjct: 536 SRDQPQKVYVQHKMREQSQRIWNLLAEGAAVYIAGSSTKMPADVTSAFEEIVSYENEVSA 595

Query: 607 DSAANWLKALQRAGRYHVEAWS 628
           + A  W++AL++ G++H+EAWS
Sbjct: 596 EDAVRWIRALEKCGKFHIEAWS 617

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580311|ref|XP_002530984.1| NADPH fad oxidoreductase, putative [Ricinus communis] gi|223529436|gb|EEF31396.1| NADPH fad oxidoreductase, putative [Ricinus communis]

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/628 (72%), Positives = 519/628 (82%), Gaps = 10/628 (1%)

Query: 3   EEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVS 62
           EEK   L+ILYA++TGNA+DAAERI RE++RRGC V +  +D +DA  LP EDT+IFVVS
Sbjct: 2   EEKPKMLVILYATETGNAMDAAERISREADRRGCLVTLCSMDQFDASSLPHEDTIIFVVS 61

Query: 63  TTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122
           TTGQGDTP+SMK FWRFLLQK+L+KQWLEGV YAVFGLGDSGYQK+NFVAK+LD RL DL
Sbjct: 62  TTGQGDTPNSMKGFWRFLLQKNLTKQWLEGVHYAVFGLGDSGYQKYNFVAKRLDRRLSDL 121

Query: 123 GATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPK 182
           GAT +VERGLGDDQHPSGYEGALDPWM SLW  L+ I+P F P GPD+V  E  LIDQPK
Sbjct: 122 GATVIVERGLGDDQHPSGYEGALDPWMSSLWHALYLINPKFLPNGPDYVTPESMLIDQPK 181

Query: 183 VHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTK 242
           V I YH  DN   +LS     + +      ARSMS GK ++  NK  CFLKM+KNQ LTK
Sbjct: 182 VTIRYHRTDNIDLQLST----DAVNHNCLEARSMSPGKSAHDKNKPACFLKMVKNQSLTK 237

Query: 243 SGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEM 302
            G GKDV HFEF  VS AIEYEVGDVL++LP Q+PAAVD FIQRCNLDP +LITV  +  
Sbjct: 238 VGCGKDVRHFEFGSVSTAIEYEVGDVLDVLPGQNPAAVDAFIQRCNLDPGSLITVHPRVT 297

Query: 303 KNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP 362
           +        NT  VPIKL+ FVELTMD+ SASPRRYFFEVMS++ATA+HEKERLQYF+SP
Sbjct: 298 ECS----QSNTPTVPIKLKNFVELTMDIASASPRRYFFEVMSFYATAQHEKERLQYFSSP 353

Query: 363 EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVH 422
           +GRDDLY+YNQKERRTVLEVLEDFPSVQMP +WLVQLVPPLKTRAFSISSSP AHPNQVH
Sbjct: 354 DGRDDLYQYNQKERRTVLEVLEDFPSVQMPFEWLVQLVPPLKTRAFSISSSPSAHPNQVH 413

Query: 423 LTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 482
           LTV+VVSWTTP+KRKRTGLCS+WLA LDPQQ IYIPAWFQKGSLP PPPS+PLIL+GPGT
Sbjct: 414 LTVNVVSWTTPFKRKRTGLCSMWLAKLDPQQSIYIPAWFQKGSLPPPPPSLPLILVGPGT 473

Query: 483 GCAPFRGFVEERAIQS-SSGPAAPIIFFFGCRN-EDDFLYRELWLSHSLNDGVFSEAKGG 540
           GCAPFRGF+EERAI   S G AAPI+FFFGCRN E+DFLYR+LWLSH+ + G+ SE +GG
Sbjct: 474 GCAPFRGFLEERAIHDMSGGAAAPIMFFFGCRNEENDFLYRDLWLSHARDGGLLSEERGG 533

Query: 541 GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSK 600
           GFYVAFSR QPQKVYVQHK+ + SQRIW+L+L  ASIYVAGS+TKMPSDV S FE+I+SK
Sbjct: 534 GFYVAFSRDQPQKVYVQHKIRKHSQRIWDLVLRGASIYVAGSSTKMPSDVMSAFEDIISK 593

Query: 601 EGEASRDSAANWLKALQRAGRYHVEAWS 628
           E   SR++A   L+ L++ GRYHVEAWS
Sbjct: 594 EAGVSRETALTLLRRLEKDGRYHVEAWS 621

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519236|ref|XP_004166641.1| PREDICTED: LOW QUALITY PROTEIN: NADPH-dependent diflavin oxidoreductase ATR3-like [Cucumis sativus]

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/622 (70%), Positives = 514/622 (82%), Gaps = 6/622 (0%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           +LLILYA+QTGNA DAAER+GRE+E RGC V +  VD+YDA  LP ED +IFVVSTTGQG
Sbjct: 6   ELLILYATQTGNAQDAAERLGREAEHRGCVVRLLSVDEYDASHLPHEDGIIFVVSTTGQG 65

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           +TPDSM+VFW+FLLQ+SL + WL+GV YAVFGLGDS YQK+NFVAKKLD RL DLGA A+
Sbjct: 66  ETPDSMRVFWKFLLQRSLDQYWLKGVPYAVFGLGDSSYQKYNFVAKKLDKRLSDLGAAAI 125

Query: 128 VERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITY 187
           + RGLGDDQH SGYE ALDPWM SLW  L+ I+P FF +G D V     +IDQP V + Y
Sbjct: 126 LGRGLGDDQHHSGYEAALDPWMLSLWSSLNDINPMFFXKGTDFVFSNDTIIDQPSVQVAY 185

Query: 188 HSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGK 247
           +++    S L+  SDL+ + + +E AR MS GK S+   K  CFLKMIKNQ L+K GSGK
Sbjct: 186 YNVGKLDSPLT--SDLKYMEI-IERARLMSPGKFSHGKKKPDCFLKMIKNQRLSKVGSGK 242

Query: 248 DVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLP 307
           DV HFEFEFVS+ IEYEVGDVLE+LPSQ  AAV+ FIQRCNLDP++ ITV  +  +   P
Sbjct: 243 DVRHFEFEFVSSVIEYEVGDVLEVLPSQSSAAVNAFIQRCNLDPESFITVSPRNRRKQDP 302

Query: 308 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDD 367
            +       P+KL+TF+ELTMD+ SASPRRYFFEVMSY+ATA HEKERLQYFASPEGRDD
Sbjct: 303 ILAAEMG--PVKLKTFIELTMDIASASPRRYFFEVMSYYATAPHEKERLQYFASPEGRDD 360

Query: 368 LYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSV 427
           LY+YNQKERR+VLEVLEDFPSV+MP DWLVQLVPPLKTR+FSISSS LAHPNQVHLTV+V
Sbjct: 361 LYQYNQKERRSVLEVLEDFPSVKMPFDWLVQLVPPLKTRSFSISSSALAHPNQVHLTVNV 420

Query: 428 VSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPF 487
           VSWTTPYKRKR+GLCS WLAGLDP+Q +++P WF KGSLP P PS+PLIL+GPGTGCAPF
Sbjct: 421 VSWTTPYKRKRSGLCSSWLAGLDPEQSVHVPVWFHKGSLPAPSPSLPLILVGPGTGCAPF 480

Query: 488 RGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 546
           RGFVEER+I+++S   AP++FFFGCRNED DFLYR+ WLSHS N GV SE KGGGFYVAF
Sbjct: 481 RGFVEERSIENTSMATAPVLFFFGCRNEDNDFLYRDFWLSHSKNHGVLSEEKGGGFYVAF 540

Query: 547 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASR 606
           SR Q +KVYVQHKMLEQS++IWNLL   A++YVAGS+TKMP+DVWSTFEEIVSKE +  R
Sbjct: 541 SRDQQRKVYVQHKMLEQSEKIWNLLREGAAVYVAGSSTKMPADVWSTFEEIVSKETQLPR 600

Query: 607 DSAANWLKALQRAGRYHVEAWS 628
           +SA  WL+AL++AG+Y VEAWS
Sbjct: 601 ESAVRWLRALEKAGKYLVEAWS 622

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90657547|gb|ABD96847.1| hypothetical protein [Cleome spinosa]

 Score =  908 bits (2347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/631 (68%), Positives = 506/631 (80%), Gaps = 7/631 (1%)

Query: 3   EEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVS 62
           E K  KLL+LYASQTGNALDAAERIGRE+ERRGC   V   D++D   LP E+  IFVVS
Sbjct: 2   EGKPRKLLVLYASQTGNALDAAERIGREAERRGCAASVVSTDEFDPSYLPHEEAAIFVVS 61

Query: 63  TTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122
           TTGQGD PDS K FWRFLLQ++L K WL+GVR AVFGLGDSGYQK+NFVAKKLD RL DL
Sbjct: 62  TTGQGDPPDSFKAFWRFLLQRNLGKTWLQGVRCAVFGLGDSGYQKYNFVAKKLDKRLSDL 121

Query: 123 GATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPK 182
           GATA++ERGLGDDQHPSGYEG+LDPWM SLW  LHQI+P +FP+GPD ++ + KLIDQPK
Sbjct: 122 GATAIIERGLGDDQHPSGYEGSLDPWMLSLWSTLHQINPKYFPKGPDVMVAQDKLIDQPK 181

Query: 183 VHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTK 242
             I YH   N        SDL+ I MQ+E  R MS GKLS   +K  CFLKM +N+ LTK
Sbjct: 182 YRILYHKAGNMRPSFLAESDLKYISMQIEKTRGMSPGKLSREKSKPDCFLKMARNEMLTK 241

Query: 243 SGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEM 302
           +GS KDV HFEFEF+S+ IEYEVGDV+E+LPSQ+PAAV+ FI+RC LDP++ IT+  +E 
Sbjct: 242 AGSTKDVRHFEFEFISSNIEYEVGDVVELLPSQNPAAVEAFIKRCELDPESFITIHPRET 301

Query: 303 KNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP 362
            N L    +  TE P+KL+TFVE  MDV SASPRRYFFEVMS++ATAEHEKERLQYFAS 
Sbjct: 302 DNGLDG--EVLTEFPVKLKTFVEFAMDVASASPRRYFFEVMSFYATAEHEKERLQYFASA 359

Query: 363 EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVH 422
           EGRDDLYKYNQKERR+VLEVLEDFPSVQ+P +WLVQLVPPLK RAFSISSSP AHP QVH
Sbjct: 360 EGRDDLYKYNQKERRSVLEVLEDFPSVQIPFEWLVQLVPPLKPRAFSISSSPSAHPGQVH 419

Query: 423 LTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 482
           LTVS+VSWTTPYKR R GLCS WLA L+P++G+Y+PAWF KG LP PP  +P+IL+GPGT
Sbjct: 420 LTVSIVSWTTPYKRVRKGLCSSWLASLNPEKGVYVPAWFHKGCLPAPPTQLPIILVGPGT 479

Query: 483 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLND---GVFSEAK 538
           GCAPFRGF+ ERA+QS SGP AP+IFFFGCRN+D DFLYR+ W S S N    GV SE K
Sbjct: 480 GCAPFRGFIAERAVQSLSGPTAPVIFFFGCRNKDTDFLYRDFWESQSRNSVSGGVLSEEK 539

Query: 539 GGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 597
           GGGFY AFSR QP+KVYVQHK+ EQ +++W LL    A++YVAGS+TKMP+DV +  EEI
Sbjct: 540 GGGFYAAFSRDQPKKVYVQHKIREQRKKVWELLRDGGAAVYVAGSSTKMPADVMAALEEI 599

Query: 598 VSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           V++E   S+  A  WL+AL++AGRYHVEAWS
Sbjct: 600 VAEETGGSKADAERWLRALEKAGRYHVEAWS 630

Source: Cleome spinosa

Species: Cleome spinosa

Genus: Cleome

Family: Cleomaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458325|ref|XP_004146898.1| PREDICTED: NADPH-dependent diflavin oxidoreductase ATR3-like [Cucumis sativus]

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/629 (69%), Positives = 514/629 (81%), Gaps = 13/629 (2%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           +LLILYA+QTGNA DAAER+GRE+E RGC V +  VD+YDA  LP ED +IFVVSTTGQG
Sbjct: 6   ELLILYATQTGNAQDAAERLGREAEHRGCVVRLLSVDEYDASHLPHEDGIIFVVSTTGQG 65

Query: 68  DTPDSMKVFW-------RFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLL 120
           +TPDSM+ F+        FLLQ+SL + WL+GV YAVFGLGDS YQK+NFVAKKLD RL 
Sbjct: 66  ETPDSMRTFFLLFCDTFSFLLQRSLDQYWLKGVPYAVFGLGDSSYQKYNFVAKKLDKRLS 125

Query: 121 DLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQ 180
           DLGA A++ RGLGDDQH SGYE ALDPWM SLW  L+ I+P FF +G D V     +IDQ
Sbjct: 126 DLGAAAILGRGLGDDQHHSGYEAALDPWMLSLWSSLNDINPMFFLKGTDFVFSIDTIIDQ 185

Query: 181 PKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPL 240
           P V + Y+++    S+L+  SDL+ + + +E AR MS GK S+   K  CFLKMIKNQ L
Sbjct: 186 PSVQVAYYNVGKLDSQLT--SDLKYMEI-IERARLMSPGKFSHGKKKPDCFLKMIKNQRL 242

Query: 241 TKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHK 300
           +K GSGKDV HFEFEFVS+ IEYEVGDVLE+LPSQ  AAV+ FIQRCNLDP++ ITV  +
Sbjct: 243 SKVGSGKDVRHFEFEFVSSVIEYEVGDVLEVLPSQSSAAVNAFIQRCNLDPESFITVSPR 302

Query: 301 EMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFA 360
             +   P +       P+KL+TF+ELTMD+ SASPRRYFFEVMSY+ATA HEKERLQYFA
Sbjct: 303 NRRKQDPILAAEMG--PVKLKTFIELTMDIASASPRRYFFEVMSYYATAPHEKERLQYFA 360

Query: 361 SPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQ 420
           SPEGRDDLY+YNQKERR+VLEVLEDFPSV+MP DWLVQLVPPLKTR+FSISSS LAHPNQ
Sbjct: 361 SPEGRDDLYQYNQKERRSVLEVLEDFPSVKMPFDWLVQLVPPLKTRSFSISSSALAHPNQ 420

Query: 421 VHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGP 480
           VHLTV+VVSWTTPYKRKR+GLCS WLAGLDP+Q +++P WF KGSLP P PS+PLIL+GP
Sbjct: 421 VHLTVNVVSWTTPYKRKRSGLCSSWLAGLDPEQSVHVPVWFHKGSLPAPSPSLPLILVGP 480

Query: 481 GTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKG 539
           GTGCAPFRGFVEER+I+++S   AP++FFFGCRNED DFLYR+ WLSHS N GV SE KG
Sbjct: 481 GTGCAPFRGFVEERSIENTSMATAPVLFFFGCRNEDNDFLYRDFWLSHSKNHGVLSEEKG 540

Query: 540 GGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVS 599
           GGFYVAFSR Q +KVYVQHKMLEQS++IWNLL   A++YVAGS+TKMP+DVWSTFEEIVS
Sbjct: 541 GGFYVAFSRDQQRKVYVQHKMLEQSEKIWNLLREGAAVYVAGSSTKMPADVWSTFEEIVS 600

Query: 600 KEGEASRDSAANWLKALQRAGRYHVEAWS 628
           KE +  R+SA  WL+AL++AG+YHVEAWS
Sbjct: 601 KETQLPRESAVRWLRALEKAGKYHVEAWS 629

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	628
TAIR|locus:2076547	623	AT3G02280 [Arabidopsis thalian	0.984	0.991	0.667	3.2e-232
UNIPROTKB|E1BY65	596	NDOR1 "Uncharacterized protein	0.605	0.637	0.395	4.9e-112
ZFIN|ZDB-GENE-040426-1555	595	ndor1 "NADPH dependent diflavi	0.603	0.636	0.384	1.3e-111
UNIPROTKB|Q9UHB4	597	NDOR1 "NADPH-dependent diflavi	0.601	0.633	0.400	1e-109
UNIPROTKB|G3MXY0	597	NDOR1 "NADPH-dependent diflavi	0.601	0.633	0.393	1.9e-106
UNIPROTKB|E2R7E5	703	NDOR1 "Uncharacterized protein	0.592	0.529	0.396	1.3e-105
UNIPROTKB|D3YTG6	590	NDOR1 "NADPH-dependent diflavi	0.590	0.628	0.395	1.3e-105
RGD|1308479	598	Ndor1 "NADPH dependent diflavi	0.600	0.630	0.386	1.9e-104
UNIPROTKB|F1RVV9	597	NDOR1 "Uncharacterized protein	0.603	0.634	0.386	5.1e-104
UNIPROTKB|Q1JPJ0	577	NDOR1 "NADPH-dependent diflavi	0.565	0.615	0.395	9.5e-103

TAIR|locus:2076547 AT3G02280 [Arabidopsis thaliana (taxid:3702)]

 Score = 2240 (793.6 bits), Expect = 3.2e-232, P = 3.2e-232
 Identities = 419/628 (66%), Positives = 504/628 (80%)

Query:     4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPE-EDTVIFVVS 62
             EK+ KLL+LYASQTGNALDAAERIGRE+ERRG P  V   D++D   LP  E+ V+FVVS
Sbjct:     3 EKQRKLLVLYASQTGNALDAAERIGREAERRGLPASVVSTDEFDTSSLPHHEEAVVFVVS 62

Query:    63 TTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122
             TTGQGD+PDS K FWRFLLQ++L   WL+ VRYAVFGLGDSGYQK+NFVAKKLD RL DL
Sbjct:    63 TTGQGDSPDSFKAFWRFLLQRNLGNYWLQQVRYAVFGLGDSGYQKYNFVAKKLDKRLSDL 122

Query:   123 GATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPK 182
             GAT ++E+GLGDDQHPSGYEG LDPWM SLWR L+QI+P +FP+GPD  I + ++ID+PK
Sbjct:   123 GATTIIEKGLGDDQHPSGYEGTLDPWMLSLWRTLYQINPKYFPKGPDVKIPQDEVIDKPK 182

Query:   183 VHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTK 242
               I +H  +    +L + SD+      ++ AR MS GKL    +K  CFLKM +N+ LTK
Sbjct:   183 YRILFHKQEKLEPKLLSDSDI------IQRARGMSPGKLFKDKSKPDCFLKMTRNEVLTK 236

Query:   243 SGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEM 302
             + S KDV HFEF+FVS+ IEYEVGDV+E+LPSQ+ + VD FI+RC LDP++ ITV  +E 
Sbjct:   237 AESTKDVRHFEFQFVSSTIEYEVGDVVELLPSQNSSVVDAFIERCGLDPESFITVGPRET 296

Query:   303 KNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP 362
             +N      +  T++PIKL+TFVELTMDVTSASPRRYFFE+MS++ATAEHEKERLQYFASP
Sbjct:   297 ENSSFS-EEMITQIPIKLKTFVELTMDVTSASPRRYFFEIMSFYATAEHEKERLQYFASP 355

Query:   363 EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVH 422
             EGRDDLY YNQKERR++LEVLEDFPSVQ+P DWLVQLVPPLK RAFSISSSPLAHP  VH
Sbjct:   356 EGRDDLYNYNQKERRSILEVLEDFPSVQIPFDWLVQLVPPLKPRAFSISSSPLAHPAAVH 415

Query:   423 LTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 482
             LTVS+VSW TPYKR R GLCS WLA L P+Q + IP WF KGSLP P  S+PLIL+GPGT
Sbjct:   416 LTVSIVSWITPYKRTRKGLCSSWLASLAPEQEVNIPVWFHKGSLPAPSQSLPLILVGPGT 475

Query:   483 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGG 541
             GCAPFRGF+ ERA+Q+ S P AP++FFFGCRN+D DFLYR+ W SH+   G+ SE KGGG
Sbjct:   476 GCAPFRGFIAERAVQAQSSPVAPVMFFFGCRNKDTDFLYRDFWESHAREGGMLSEGKGGG 535

Query:   542 FYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKE 601
             FY AFSR QP+KVYVQHK+ E S+R+W+LL   A++YVAGS+TKMP DV S FE+IVS+E
Sbjct:   536 FYTAFSRDQPKKVYVQHKIREMSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEE 595

Query:   602 -GEASRDSAANWLKALQRAGRYHVEAWS 628
              G  S++ A+ WLKAL++ GRY+VEAWS
Sbjct:   596 TGGGSKEVASRWLKALEKTGRYNVEAWS 623

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010212 "response to ionizing radiation" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|E1BY65 NDOR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 720 (258.5 bits), Expect = 4.9e-112, Sum P(2) = 4.9e-112
 Identities = 159/402 (39%), Positives = 228/402 (56%)

Query:   233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPD 292
             +M+ NQ +T     +DV   EF+   + I +  GDV+ I P   P  V  F Q   LDPD
Sbjct:   211 RMVSNQRITAESHFQDVRLIEFDVTGSGITFSAGDVVMIQPQNCPEDVQQFCQLLRLDPD 270

Query:   293 ALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHE 352
                 ++  E    LP  H      P  +R  V   +D+ S  PRR FFE++S+F+T E E
Sbjct:   271 KCFLLKPTEPGTALP-AHLLQ---PCTIRHLVTHYLDI-SCVPRRSFFELLSHFSTNELE 325

Query:   353 KERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ--MPIDWLVQLVPPLKTRAFSI 410
             +E+LQ F+S +G+++LY Y  + RRT LE L DFP     +P ++L+ L+P ++ RAFSI
Sbjct:   326 REKLQEFSSAQGQEELYSYCNRPRRTTLEALWDFPHTTSAIPPEYLLDLIPRIRPRAFSI 385

Query:   411 SSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRP 469
             +SS LAHP ++ + V+VV + T   + R GLCS WLA L+P+QG + +P W +KG +  P
Sbjct:   386 ASSMLAHPGRIQILVAVVRYKTRLSKPRRGLCSTWLASLNPEQGDVRVPLWVKKGGMKFP 445

Query:   470 P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSH 527
               P  P+I+IGPGTG APFR  ++ER  Q   G       FFGCR +  DF  +  W   
Sbjct:   446 ANPDTPVIMIGPGTGVAPFRAAIQERVAQGQKGNC----LFFGCRQKSKDFYCQAEW-EE 500

Query:   528 SLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKM 586
              +  G          + AFSR Q +KVYVQH++ E  Q +W LL  + A IY+AG+A +M
Sbjct:   501 LVTKGFLM------LFTAFSRDQEEKVYVQHRIRENGQLLWELLNGQSAHIYLAGNAKQM 554

Query:   587 PSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
             P+ V    + ++  EG  S   A  +L AL+R+ R+  E WS
Sbjct:   555 PAAVAEALQSVLQLEGGLSPSEAEEYLSALERSQRFQSETWS 596

GO:0005506 "iron ion binding" evidence=IEA

GO:0003958 "NADPH-hemoprotein reductase activity" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0016491 "oxidoreductase activity" evidence=IBA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IBA

GO:0005634 "nucleus" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0036245 "cellular response to menadione" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1555 ndor1 "NADPH dependent diflavin oxidoreductase 1" [Danio rerio (taxid:7955)]

 Score = 698 (250.8 bits), Expect = 1.3e-111, Sum P(2) = 1.3e-111
 Identities = 154/401 (38%), Positives = 228/401 (56%)

Query:   234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDA 293
             ++ NQ +T +   +DV H EF+   + IE+  GD + + P      V+   Q   LDP++
Sbjct:   211 LVFNQRVTHTAHFQDVRHIEFDITGSNIEFSAGDTVMMRPCNTSEDVEQLCQLLKLDPES 270

Query:   294 LITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEK 353
               T+   +    +P         P  +R  +E  +D+ SA PRR FFE+++ FAT E E+
Sbjct:   271 YFTLTPTDSSTEVPA----RLPQPCSIRFLLEHFLDI-SAVPRRSFFELLATFATDELEQ 325

Query:   354 ERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP--SVQMPIDWLVQLVPPLKTRAFSIS 411
             E+L  F+S  G+D L+ Y  + RRT LEVL DFP  + ++ I  L+ L P ++ R+FSI+
Sbjct:   326 EKLLEFSSAAGQDTLHSYCNRPRRTALEVLTDFPHTTAELSIGRLLDLFPEIQPRSFSIA 385

Query:   412 SSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRPP 470
             SS L HPN++ + ++VV + T   + R GLCS WLA LDP +G +Y+P W +KGSL  P 
Sbjct:   386 SSLLEHPNRIQILLAVVKYKTMLVKPRKGLCSSWLASLDPSKGDVYVPLWVKKGSLKFPQ 445

Query:   471 -PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHS 528
              P  P+I++GPGTG APFR  ++ER  Q   G  A ++FF GCR+E  DF     W    
Sbjct:   446 DPESPVIMVGPGTGVAPFRSAIQERVAQ---GKMANVLFF-GCRSESKDFYCGSEW-QEK 500

Query:   529 LNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMP 587
             +  G            AFSR Q  KVYVQH++ EQ + +W+L+  K A  Y+AG+A +MP
Sbjct:   501 VQAGQMI------LVTAFSRDQEDKVYVQHRVKEQGKLLWDLIAKKNAFFYIAGNAKQMP 554

Query:   588 SDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
             + V    + +  KEG  S + A   L  +++ GR+  E WS
Sbjct:   555 TSVCDALKAVFQKEGGMSENQAQEMLDGMEKNGRFQSETWS 595

GO:0016491 "oxidoreductase activity" evidence=IEA;IBA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS;IBA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IBA

GO:0003958 "NADPH-hemoprotein reductase activity" evidence=IBA

GO:0008219 "cell death" evidence=ISS

GO:0036245 "cellular response to menadione" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|Q9UHB4 NDOR1 "NADPH-dependent diflavin oxidoreductase 1" [Homo sapiens (taxid:9606)]

 Score = 704 (252.9 bits), Expect = 1.0e-109, Sum P(2) = 1.0e-109
 Identities = 161/402 (40%), Positives = 227/402 (56%)

Query:   234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDA 293
             MI NQ +T     +DV   EF+ + + I +  GDV+ I PS   A V  F Q   LDPD 
Sbjct:   213 MISNQRVTGPSHFQDVRLIEFDILGSGISFAAGDVVLIQPSNSAAHVQRFCQVLGLDPDQ 272

Query:   294 LITVQHKEMKNYLPDIHKNTT-EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHE 352
             L  +Q +E     PD+   T    P  +R  V   +D+ S  PRR FFE+++  +  E E
Sbjct:   273 LFMLQPRE-----PDVSSPTRLPQPCSMRHLVSHYLDIASV-PRRSFFELLACLSLHELE 326

Query:   353 KERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP--SVQMPIDWLVQLVPPLKTRAFSI 410
             +E+L  F+S +G+++L++Y  + RRT+LEVL DFP  +  +P D+L+ L+P ++ RAFSI
Sbjct:   327 REKLLEFSSAQGQEELFEYCNRPRRTILEVLCDFPHTAAAIPPDYLLDLIPVIRPRAFSI 386

Query:   411 SSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRP 469
             +SS L HP+++ + V+VV + T  K  R GLCS WLA LDP QG + +P W + GSL  P
Sbjct:   387 ASSLLTHPSRLQILVAVVQFQTRLKEPRRGLCSSWLASLDPGQGPVRVPLWVRPGSLAFP 446

Query:   470 P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSH 527
               P  P+I++GPGTG APFR  ++ER  Q  +G       FFGCR  D DF +   W   
Sbjct:   447 ETPDTPVIMVGPGTGVAPFRAAIQERVAQGQTGN----FLFFGCRWRDQDFYWEAEWQEL 502

Query:   528 SLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKM 586
                D +           AFSR+Q QKVYVQH++ E    +W LL  + A  Y+AG+A  M
Sbjct:   503 EKRDCLT-------LIPAFSREQEQKVYVQHRLRELGSLVWELLDRQGAYFYLAGNAKSM 555

Query:   587 PSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
             P+DV      I  +EG      AA +L  LQ+  R+  E W+
Sbjct:   556 PADVSEALMSIFQEEGGLCSPDAAAYLARLQQTRRFQTETWA 597

GO:0005506 "iron ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0010181 "FMN binding" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IDA

GO:0003958 "NADPH-hemoprotein reductase activity" evidence=IBA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IBA

GO:0050661 "NADP binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0008219 "cell death" evidence=IDA

GO:0036245 "cellular response to menadione" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

UNIPROTKB|G3MXY0 NDOR1 "NADPH-dependent diflavin oxidoreductase 1" [Bos taurus (taxid:9913)]

 Score = 672 (241.6 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
 Identities = 158/402 (39%), Positives = 224/402 (55%)

Query:   234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDA 293
             M+ NQ +T     +DV   EF+   + I +  GD++ I P    + V  F Q   LDP+ 
Sbjct:   213 MVSNQRVTGPSHFQDVRLIEFDISGSGISFAAGDLVLIQPENTASHVQQFCQALGLDPEQ 272

Query:   294 LITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEK 353
               T+Q +E     P         P  +R  V   +D+ S  PRR FFE+++  +  E E+
Sbjct:   273 HFTLQPREPGVTCP----TRLPQPCSVRRLVSQYLDIASV-PRRSFFELLACLSPHELER 327

Query:   354 ERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP--SVQMPIDWLVQLVPPLKTRAFSIS 411
             E+L  F S  G+++L +Y  + RRT LEVL DFP  +  +P D+L+ L+P ++ RAFSI+
Sbjct:   328 EKLWEFGSARGQEELCEYCTRPRRTALEVLCDFPHTAAAVPPDYLLDLLPLIRPRAFSIA 387

Query:   412 SSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRPP 470
             SS  AHP+++ + V+VV + T  +  R GLCS WLA LDP QG + +P W + G L  P 
Sbjct:   388 SSLRAHPSRLQILVAVVQYQTRLREPRRGLCSSWLASLDPAQGPVRVPLWVRSGGLTFPK 447

Query:   471 -PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHS 528
              P VP+I++GPGTG APFR  ++ER  Q  +G     + FFGCR  D DF +   W    
Sbjct:   448 TPDVPVIMVGPGTGVAPFRAAIQERVAQGETGN----VLFFGCRRRDQDFYWEAEW--EQ 501

Query:   529 LNDGVFSEAKGGGFYV-AFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKM 586
             L      +A+G    V AFSR+Q QKVYVQH++      +W LL  + A  Y+AG+A  M
Sbjct:   502 L------QARGCLTLVTAFSREQEQKVYVQHRLRALGPLVWELLDGRGAHFYLAGNAKYM 555

Query:   587 PSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
             P+DV  T   I  +EG  S   AA +L  LQR  R+  E W+
Sbjct:   556 PADVCDTLLSIFREEGGLSDPDAAAYLAQLQRTLRFQTETWA 597

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IBA

GO:0016491 "oxidoreductase activity" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0003958 "NADPH-hemoprotein reductase activity" evidence=IBA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0036245 "cellular response to menadione" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|E2R7E5 NDOR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 681 (244.8 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
 Identities = 157/396 (39%), Positives = 223/396 (56%)

Query:   234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDA 293
             M+ NQ +T     +DV   EF+   + + +  GDV+ I P    + +  F Q   LDPD 
Sbjct:   260 MVTNQRVTGPSHFQDVRLIEFDITGSGLSFAAGDVVLIQPENRASDLGRFCQALGLDPDQ 319

Query:   294 LITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEK 353
               T+Q +E     P         P  +R  V   +D+ S  PRR FFE+++  +  E E+
Sbjct:   320 YFTLQPREPGVPCPA----QLPQPCSVRHLVAHYLDIASV-PRRSFFELLACLSPHELER 374

Query:   354 ERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ--MPIDWLVQLVPPLKTRAFSIS 411
             E+L   +SP+G+++LY Y  + RRT+LEVL DFP     +P D+L+ L+P ++ RAFSI+
Sbjct:   375 EKLLQLSSPQGQEELYSYCNRPRRTILEVLCDFPHTAGAIPADYLLDLIPLIRPRAFSIA 434

Query:   412 SSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRPP 470
             SS LAHP ++ + V+VV + T  K  R GLCS WLA LDP QG +Y+P W + G L  P 
Sbjct:   435 SSLLAHPLRLQILVAVVQYQTRLKEPRRGLCSSWLASLDPGQGPVYVPLWVRPGGLTFPE 494

Query:   471 -PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHS 528
              P  P+I++GPGTG APFR  ++ER  +  +G       FFGCR  D DF +   WL   
Sbjct:   495 TPDTPVIMVGPGTGVAPFRAAIQERVARDQTGN----FLFFGCRWRDQDFYWEAEWLQ-- 548

Query:   529 LNDGVFSEAKGG-GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKM 586
                    E KG    + AFSR+Q +K+YVQH++ E    +W+LL  + A  Y+AG+A  M
Sbjct:   549 ------LERKGCLMLFTAFSREQERKIYVQHRLRELGPLVWDLLDRQGAYFYLAGNAKCM 602

Query:   587 PSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY 622
             P+DV      I  +EG  S   AAN+L  LQR  R+
Sbjct:   603 PADVSEALASIFQEEGGLSGPDAANYLARLQRTLRF 638

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IBA

GO:0016491 "oxidoreductase activity" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0003958 "NADPH-hemoprotein reductase activity" evidence=IBA

GO:0010181 "FMN binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|D3YTG6 NDOR1 "NADPH-dependent diflavin oxidoreductase 1" [Homo sapiens (taxid:9606)]

 Score = 665 (239.2 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
 Identities = 159/402 (39%), Positives = 222/402 (55%)

Query:   234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDA 293
             MI NQ +T     +DV   EF+ + + I +  GDV+ I PS   A V  F Q   LDPD 
Sbjct:   213 MISNQRVTGPSHFQDVRLIEFDILGSGISFAAGDVVLIQPSNSAAHVQRFCQVLGLDPDQ 272

Query:   294 LITVQHKEMKNYLPDIHKNTT-EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHE 352
             L  +Q +E     PD+   T    P  +R  V   +D+ S  PRR FFE+++  +  E E
Sbjct:   273 LFMLQPRE-----PDVSSPTRLPQPCSMRHLVSHYLDIASV-PRRSFFELLACLSLHELE 326

Query:   353 KERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP--SVQMPIDWLVQLVPPLKTRAFSI 410
             +E+L  F+S +G+++L++Y  + RRT+LEVL DFP  +  +P D+L+ L+P ++ RAFSI
Sbjct:   327 REKLLEFSSAQGQEELFEYCNRPRRTILEVLCDFPHTAAAIPPDYLLDLIPVIRPRAFSI 386

Query:   411 SSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRP 469
             +SS L       + V+VV + T  K  R GLCS WLA LDP QG + +P W + GSL  P
Sbjct:   387 ASSLL-------ILVAVVQFQTRLKEPRRGLCSSWLASLDPGQGPVRVPLWVRPGSLAFP 439

Query:   470 P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSH 527
               P  P+I++GPGTG APFR  ++ER  Q  +G       FFGCR  D DF +   W   
Sbjct:   440 ETPDTPVIMVGPGTGVAPFRAAIQERVAQGQTGN----FLFFGCRWRDQDFYWEAEWQEL 495

Query:   528 SLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKM 586
                D +           AFSR+Q QKVYVQH++ E    +W LL  + A  Y+AG+A  M
Sbjct:   496 EKRDCLT-------LIPAFSREQEQKVYVQHRLRELGSLVWELLDRQGAYFYLAGNAKSM 548

Query:   587 PSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
             P+DV      I  +EG      AA +L  LQ+  R+  E W+
Sbjct:   549 PADVSEALMSIFQEEGGLCSPDAAAYLARLQQTRRFQTETWA 590

GO:0005506 "iron ion binding" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

RGD|1308479 Ndor1 "NADPH dependent diflavin oxidoreductase 1" [Rattus norvegicus (taxid:10116)]

 Score = 649 (233.5 bits), Expect = 1.9e-104, Sum P(2) = 1.9e-104
 Identities = 156/404 (38%), Positives = 225/404 (55%)

Query:   234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDA 293
             ++ NQ +T     +DV   EF+   + I +  GDV+ ILPS   A    F Q   LDP+ 
Sbjct:   213 VVTNQRVTGPQHFQDVRLMEFDITESNISFAAGDVVLILPSNSEAHTKQFCQLLCLDPNQ 272

Query:   294 LITVQHKEMK-NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHE 352
               T++ +E    Y P + ++ T     +   V   +D+ S  PRR FFE+++  +    E
Sbjct:   273 FFTLKPREPGVPYPPGLPQHCT-----VWHLVSQYLDIASV-PRRSFFELLACLSPHALE 326

Query:   353 KERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ--MPIDWLVQLVPPLKTRAFSI 410
             +E+L  F+S  G+++L++Y  + RRT+LEVL DFP     +P D+L+ L+P ++ RAFSI
Sbjct:   327 REKLLEFSSARGQEELWEYCNRPRRTILEVLCDFPHTAGAIPPDYLLDLIPRIRPRAFSI 386

Query:   411 SSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG--IYIPAWFQKGSLPR 468
             +SS LAHP ++ + V+VV + T  K  R GLCS WLA L P Q   + +P W + GSL  
Sbjct:   387 ASSLLAHPRRLQILVAVVKYQTRLKEPRRGLCSSWLASLTPGQAGPVRVPLWVRPGSLVF 446

Query:   469 PP-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLS 526
             P  P  P+I++GPGTG APFR  ++ER      G     + FFGCR  D DF ++  W  
Sbjct:   447 PKTPGTPIIMVGPGTGVAPFRAAIQERVAHGQMGN----VLFFGCRQRDQDFYWQTEW-- 500

Query:   527 HSLNDGVFSEAKGGGFYV-AFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSAT 584
               L      E +G    V AFSR+Q QKVYVQH++ E    +W LL  + A  Y+AG+A 
Sbjct:   501 QEL------EQRGCLTLVTAFSREQAQKVYVQHRLRELGPLVWELLDGQGAYFYLAGNAK 554

Query:   585 KMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
              MP+DV      I  +EG  S   AA +L  LQ+  R+  E W+
Sbjct:   555 YMPTDVSEALTAIFQEEGRLSTTDAAAYLARLQQTLRFQTETWA 598

GO:0003674 "molecular_function" evidence=ND

GO:0003958 "NADPH-hemoprotein reductase activity" evidence=IBA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;IBA

GO:0008150 "biological_process" evidence=ND

GO:0008219 "cell death" evidence=IEA;ISO

GO:0010181 "FMN binding" evidence=IEA;ISO

GO:0016491 "oxidoreductase activity" evidence=ISO;IBA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IBA

GO:0036245 "cellular response to menadione" evidence=IEA;ISO

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA;ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;ISO

GO:0050661 "NADP binding" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|F1RVV9 NDOR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 662 (238.1 bits), Expect = 5.1e-104, Sum P(2) = 5.1e-104
 Identities = 155/401 (38%), Positives = 217/401 (54%)

Query:   234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDA 293
             M+ NQ +T     +DV   EF+   + I +  GDV+ I P    + V  F Q   LDPD 
Sbjct:   213 MVTNQRVTGPSHFQDVRLIEFDISGSGISFAAGDVVLIQPENAASRVQQFCQLLGLDPDQ 272

Query:   294 LITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEK 353
                +Q +E     P+        P  +R  V   +D++S  PRR FFE+++  +  E E+
Sbjct:   273 HFMLQPQEPGVPCPE----RLPQPCSVRRLVSQYLDISSV-PRRSFFELLACLSPHELER 327

Query:   354 ERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ--MPIDWLVQLVPPLKTRAFSIS 411
             E+L   +S  G+++L +Y  + RRT+LEVL DFP     +P  +L  L+PP++ RAFSI+
Sbjct:   328 EKLLELSSARGQEELCEYCTRPRRTILEVLCDFPHTASAVPPAYLFDLIPPIRPRAFSIA 387

Query:   412 SSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRPP 470
             SS LAHP ++ + V+VV + T  K  R GLCS WLA LDP QG + +P W + G L  P 
Sbjct:   388 SSLLAHPERLQILVAVVQYRTRLKEPRRGLCSSWLASLDPGQGPVQVPLWVRSGGLKFPE 447

Query:   471 P-SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHS 528
                 P+IL+GPGTG APFR  ++ER  +   G     + FFGCR  D DF +   W    
Sbjct:   448 TRDTPVILVGPGTGVAPFRAAIQERVARGQIGN----VLFFGCRQRDQDFYWEAEW-KEL 502

Query:   529 LNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMP 587
                G  +         AFSR+Q QKVYVQH++ EQ   +W LL  + A  Y+AG+A  MP
Sbjct:   503 QERGCLT------LITAFSREQEQKVYVQHRIREQGPLVWELLERRGAHFYLAGNAKYMP 556

Query:   588 SDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
             + V      I  +EG  S   AA +L  LQR  R+  E W+
Sbjct:   557 AGVSDALTSIFQEEGGLSSPEAAAYLARLQRTLRFQTETWA 597

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0036245 "cellular response to menadione" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|Q1JPJ0 NDOR1 "NADPH-dependent diflavin oxidoreductase 1" [Bos taurus (taxid:9913)]

 Score = 637 (229.3 bits), Expect = 9.5e-103, Sum P(2) = 9.5e-103
 Identities = 150/379 (39%), Positives = 213/379 (56%)

Query:   234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDA 293
             M+ NQ +T     +DV   EF+   + I +  GD++ I P    + V  F Q   LDP+ 
Sbjct:   213 MVSNQRVTGPSHFQDVRLIEFDISGSGISFAAGDLVLIQPENTASHVQQFCQALGLDPEQ 272

Query:   294 LITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEK 353
               T+Q +E     P         P  +R  V   +D+ S  PRR FFE+++  +  E E+
Sbjct:   273 HFTLQPREPGVTCP----TRLPQPCSVRRLVSQYLDIASV-PRRSFFELLACLSPHELER 327

Query:   354 ERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP--SVQMPIDWLVQLVPPLKTRAFSIS 411
             E+L+ F S  G+++L +Y  + RRT LEVL DFP  +  +P D+L+ L+P ++ RAFSI+
Sbjct:   328 EKLREFGSARGQEELCEYCTRPRRTALEVLCDFPHTAAAVPPDYLLDLLPLIRPRAFSIA 387

Query:   412 SSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRPP 470
             SS  AHP+++H+ V+VV + T  +  R GLCS WLA LDP QG + +P W + G L  P 
Sbjct:   388 SSLRAHPSRLHILVAVVQYQTRLREPRRGLCSSWLASLDPAQGPVRVPLWVRSGGLTFPK 447

Query:   471 -PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHS 528
              P VP+I++GPGTG APFR  ++ER  Q  +G     + FFGCR  D DF +   W    
Sbjct:   448 TPDVPVIMVGPGTGVAPFRAAIQERVAQGETGN----VLFFGCRRRDQDFYWEAEW--EQ 501

Query:   529 LNDGVFSEAKGGGFYV-AFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKM 586
             L      +A+G    V AFSR+Q QKVYVQH++      +W LL    A  Y+AG+A  M
Sbjct:   502 L------QARGCLTLVTAFSREQEQKVYVQHRLRALGPLVWELLDGGGAHFYLAGNAKYM 555

Query:   587 PSDVWSTFEEIVSKEGEAS 605
             P+DV  T   I  +EG  S
Sbjct:   556 PADVCDTLLSIFREEGGLS 574

GO:0005829 "cytosol" evidence=ISS

GO:0036245 "cellular response to menadione" evidence=ISS

GO:0008219 "cell death" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6BR77	TAH18_DEBHA	1, ., -, ., -, ., -	0.3151	0.9044	0.9419	yes	no
Q54JL0	NDOR1_DICDI	1, ., 6, ., -, ., -	0.3590	0.8789	0.8720	yes	no
P0CP12	TAH18_CRYNJ	1, ., -, ., -, ., -	0.3166	0.9410	0.9578	yes	no
Q1JPJ0	NDOR1_BOVIN	1, ., 6, ., -, ., -	0.3801	0.8964	0.9757	yes	no
Q6NPS8	ATR3_ARATH	1, ., 6, ., 9, 9, ., -	0.6671	0.9840	0.9919	yes	no
Q6CCH0	TAH18_YARLI	1, ., -, ., -, ., -	0.3062	0.9363	0.8546	yes	no
O94613	TAH18_SCHPO	1, ., -, ., -, ., -	0.3264	0.9108	0.9794	yes	no
Q4WU59	TAH18_ASPFU	1, ., -, ., -, ., -	0.3094	0.9633	0.9250	yes	no
Q5BB41	TAH18_EMENI	1, ., -, ., -, ., -	0.3292	0.9538	0.9159	yes	no
A2AI05	NDOR1_MOUSE	1, ., 6, ., -, ., -	0.3882	0.9299	0.9765	yes	no
Q4HZQ1	TAH18_GIBZE	1, ., -, ., -, ., -	0.3120	0.8630	0.8988	yes	no
Q9UHB4	NDOR1_HUMAN	1, ., 6, ., -, ., -	0.4012	0.9331	0.9815	yes	no
Q6PFP6	NDOR1_DANRE	1, ., 6, ., -, ., -	0.3990	0.9235	0.9747	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ATR3	nadph-cytochrome P450 oxydoreductase (633 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IX.3567.1	sulfite reductase (EC-1.8.7.1) (576 aa)	•		•				•		0.502
	gw1.I.1513.1	sulfite reductase (EC-1.8.7.1) (634 aa)	•		•				•		0.460

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	628
cd06207	382	cd06207, CyPoR_like, NADPH cytochrome p450 reducta	1e-151
COG0369	587	COG0369, CysJ, Sulfite reductase, alpha subunit (f	1e-141
cd06204	416	cd06204, CYPOR, NADPH cytochrome p450 reductase (C	3e-96
TIGR01931	597	TIGR01931, cysJ, sulfite reductase [NADPH] flavopr	2e-91
cd06199	360	cd06199, SiR, Cytochrome p450- like alpha subunits	3e-86
cd06203	398	cd06203, methionine_synthase_red, Human methionine	2e-72
cd06206	384	cd06206, bifunctional_CYPOR, These bifunctional pr	7e-72
cd06202	406	cd06202, Nitric_oxide_synthase, The ferredoxin-red	9e-70
PRK06214	530	PRK06214, PRK06214, sulfite reductase; Provisional	3e-65
cd06182	267	cd06182, CYPOR_like, NADPH cytochrome p450 reducta	1e-63
PRK10953	600	PRK10953, cysJ, sulfite reductase subunit alpha; P	5e-58
pfam00667	217	pfam00667, FAD_binding_1, FAD binding domain	3e-54
pfam00258	142	pfam00258, Flavodoxin_1, Flavodoxin	4e-40
cd06208	286	cd06208, CYPOR_like_FNR, These ferredoxin reductas	4e-25
cd06200	245	cd06200, SiR_like1, Cytochrome p450- like alpha su	1e-24
cd00322	223	cd00322, FNR_like, Ferredoxin reductase (FNR), an	2e-19
cd06201	289	cd06201, SiR_like2, Cytochrome p450- like alpha su	2e-18
COG0716	151	COG0716, FldA, Flavodoxins [Energy production and	2e-17
pfam00175	106	pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi	9e-16
PLN03116	307	PLN03116, PLN03116, ferredoxin--NADP+ reductase; P	1e-15
PRK08105	149	PRK08105, PRK08105, flavodoxin; Provisional	3e-13
TIGR01753	140	TIGR01753, flav_short, flavodoxin, short chain	4e-13
PRK06703	151	PRK06703, PRK06703, flavodoxin; Provisional	1e-12
PRK09004	146	PRK09004, PRK09004, FMN-binding protein MioC; Prov	7e-12
PLN03115	367	PLN03115, PLN03115, ferredoxin--NADP(+) reductase;	2e-10
TIGR03224	411	TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reduc	9e-10
PRK06756	148	PRK06756, PRK06756, flavodoxin; Provisional	1e-08
cd06217	235	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur bi	5e-08
cd06188	283	cd06188, NADH_quinone_reductase, Na+-translocating	1e-07
PRK07308	146	PRK07308, PRK07308, flavodoxin; Validated	3e-07
COG0543	252	COG0543, UbiB, 2-polyprenylphenol hydroxylase and	9e-07
PRK09267	169	PRK09267, PRK09267, flavodoxin FldA; Validated	2e-06
TIGR01752	167	TIGR01752, flav_long, flavodoxin, long chain	3e-06
cd06187	224	cd06187, O2ase_reductase_like, The oxygenase reduc	2e-05
cd06194	222	cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulf	4e-05
cd06216	243	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi	6e-05
COG1018	266	COG1018, Hmp, Flavodoxin reductases (ferredoxin-NA	9e-05
cd06212	232	cd06212, monooxygenase_like, The oxygenase reducta	8e-04
cd06189	224	cd06189, flavin_oxioreductase, NAD(P)H dependent f	0.002
cd06221	253	cd06221, sulfite_reductase_like, Anaerobic sulfite	0.002
cd06215	231	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur bi	0.002

>gnl|CDD|99803 cd06207, CyPoR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

 Score =  441 bits (1136), Expect = e-151
 Identities = 151/410 (36%), Positives = 210/410 (51%), Gaps = 43/410 (10%)

Query: 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPD 292
           K+ +N+ LT +   +   H EF+   + + YE GD L I P    A VD F+ R  LD D
Sbjct: 1   KVTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGD 60

Query: 293 ALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHE 352
            ++ V                                    S R+   + +  F     +
Sbjct: 61  DVVRV--------------------EPNEQQRGKPPFPEPISVRQLLKKFLDIFGKPTKK 100

Query: 353 KERLQYFASPEG--RDDLYKYNQKERRTV---------LEVLEDFPSVQMPIDWLVQLVP 401
             +L    + +   ++DLYK   +E RT          LEVL+DFPSV+  ++ L++L P
Sbjct: 101 FLKLLSQLATDEEEKEDLYKLASREGRTEYKRYEKYTYLEVLKDFPSVRPTLEQLLELCP 160

Query: 402 PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF 461
            +K R +SISSSPL +PN+VHL VS+VSW TP  R R GLCS +LAGL   Q   +  + 
Sbjct: 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQ--RVTVFI 218

Query: 462 QKGSLPRPP-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPA-APIIFFFGCRNED-DF 518
           +K S   P  P  P+I++GPGTG APFR F++ERA   + GP   P++ +FGCR+ED D+
Sbjct: 219 KKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDY 278

Query: 519 LYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKA-SI 577
           LY+E    +  +              AFSR QP+KVYVQ  + E S  ++ LL   A  I
Sbjct: 279 LYKEELEEYEKSG------VLTTLGTAFSRDQPKKVYVQDLIRENSDLVYQLLEEGAGVI 332

Query: 578 YVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
           YV GS  KMP DV   FEEI+ K G    + A   ++ L+  GRY VEAW
Sbjct: 333 YVCGSTWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 382

>gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

 Score =  424 bits (1091), Expect = e-141
 Identities = 213/627 (33%), Positives = 302/627 (48%), Gaps = 95/627 (15%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
            + +LY SQTGNA   AE + +E E  G  V+V  +DDY  + + EE  ++FVVST G+G
Sbjct: 49  PITVLYGSQTGNAEGLAEELAKELEAAGLQVLVASLDDYKPKDIAEERLLLFVVSTQGEG 108

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           + PD+   F  FL  K   K  L+G+RYAV GLGDS Y+ F    K  D RL +LGAT +
Sbjct: 109 EPPDNAVAFHEFLKGKKAPK--LDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRL 166

Query: 128 VERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITY 187
             R   D Q    +E A  PW   +                                   
Sbjct: 167 FPRVEADVQ---DFEAAAAPWRDDVL---------------------------------- 189

Query: 188 HSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGK 247
             + +       A        Q E+  S  A  ++           +++N+ LT   S K
Sbjct: 190 ELLKSKFPGQEAAPAQVATSPQSESPYSKPAPSVA----------ILLENRKLTGRDSDK 239

Query: 248 DVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLP 307
           DV H E +   + + YE GD L + P  DP  VD F++   LDP+  +TV          
Sbjct: 240 DVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTV---------- 289

Query: 308 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDD 367
                T  +   L++  E T      S  +   E +++FA  E  +  L+         D
Sbjct: 290 --DGETLPLVEALKSHFEFT------SAPKSLLENLAHFAGQEELRRLLEQL----DIAD 337

Query: 368 LYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSV 427
           L  Y   +RRT+++VL DFP  ++P + L+ L+PPLK R +SI+SSP   P++VHLTV V
Sbjct: 338 LQDY--AKRRTLIDVLRDFPPAKLPAEELIDLLPPLKPRLYSIASSPGVSPDEVHLTVGV 395

Query: 428 VSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPR--PPPSVPLILIGPGTGCA 485
           V +     R+R G+CS +LA L  +    IP + Q     R    P  P+I+IGPGTG A
Sbjct: 396 VRYQAEG-RERYGVCSGYLADLLEEGDT-IPVFVQPNKNFRLPEDPETPIIMIGPGTGIA 453

Query: 486 PFRGFVEERAIQSSSGPAAPIIFFFGCRN-EDDFLYRELWLSHSLNDGVFSEAKGGGF-- 542
           PFR FV+ERA   ++G       FFGCR+  +DFLY+E W           E    G   
Sbjct: 454 PFRAFVQERA---ANGAEGKNWLFFGCRHFTEDFLYQEEW----------EEYLKDGVLT 500

Query: 543 --YVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSK 600
              +AFSR Q +K+YVQ ++ EQ+  +W  L   A IYV G A  M  DV     +I++K
Sbjct: 501 RLDLAFSRDQEEKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAK 560

Query: 601 EGEASRDSAANWLKALQRAGRYHVEAW 627
           EG  SR+ A  +LK L++ GRY  + +
Sbjct: 561 EGGLSREEAEEYLKELKKEGRYQRDVY 587

Length = 587

>gnl|CDD|99801 cd06204, CYPOR, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

 Score =  301 bits (772), Expect = 3e-96
 Identities = 146/438 (33%), Positives = 222/438 (50%), Gaps = 57/438 (13%)

Query: 225 NNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFI 284
           + K      +  ++ L   GS +   H EF+   + I Y+ GD L + P+     V+  +
Sbjct: 1   DAKNPFLAPVAVSRELFT-GSDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLL 59

Query: 285 QRCNLD-PDALITVQHKEMKNYLPDIHKNTTEVPIK--------LRTFVELTMDVTSASP 335
           +   LD  D +I+++              + +VP          LR ++++T     A  
Sbjct: 60  KVLGLDDRDTVISLK--------SLDEPASKKVPFPCPTTYRTALRHYLDIT-----APV 106

Query: 336 RRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ---MP 392
            R     ++ FA    EKERL   AS EG+D+  K+  +  R +LEVL+DFPS +    P
Sbjct: 107 SRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQDFPSAKPTPPP 165

Query: 393 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQ 452
            D+L++L+P L+ R +SISSS   HPN++H+T  VV + TP  R   G+ + WL  L P 
Sbjct: 166 FDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPA 225

Query: 453 Q-------------------GIYIPAWFQKGS--LPRPPPSVPLILIGPGTGCAPFRGFV 491
                               G  +P + ++ +  LP  P S P+I+IGPGTG APFRGF+
Sbjct: 226 LNGEKPPTPYYLSGPRKKGGGSKVPVFVRRSNFRLPTKP-STPVIMIGPGTGVAPFRGFI 284

Query: 492 EERAIQSSSG-PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK 549
           +ERA    SG    P + FFGCR+ D DF+Y++         G   E        AFSR+
Sbjct: 285 QERAALKESGKKVGPTLLFFGCRHPDEDFIYKDEL-EEYAKLGGLLELV-----TAFSRE 338

Query: 550 QPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSA 609
           QP+KVYVQH++ E ++++W L+   A IYV G A  M  DV  T  EI++++G  +   A
Sbjct: 339 QPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGGMTETEA 398

Query: 610 ANWLKALQRAGRYHVEAW 627
             ++K L+  GRY  + W
Sbjct: 399 EEYVKKLKTRGRYQEDVW 416

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 416

>gnl|CDD|233643 TIGR01931, cysJ, sulfite reductase [NADPH] flavoprotein, alpha-component

 Score =  293 bits (753), Expect = 2e-91
 Identities = 184/617 (29%), Positives = 276/617 (44%), Gaps = 92/617 (14%)

Query: 11  ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP 70
           ILY SQTGNA   A+R+  + E  G  V +   DDY  + L +E  ++ V+ST G+G+ P
Sbjct: 63  ILYGSQTGNARRLAKRLAEKLEAAGFSVRLSSADDYKFKQLKKERLLLLVISTQGEGEPP 122

Query: 71  DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130
           +    F +FL  K   K  LE +RY+V GLGDS Y+ F    K  D RL +LG   ++ R
Sbjct: 123 EEAISFHKFLHSKKAPK--LENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPR 180

Query: 131 GLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSI 190
              D      Y+     W                      V+  +      +   +  + 
Sbjct: 181 VDADLD----YDANAAEWR-------------------AGVLTALN----EQAKGSASTP 213

Query: 191 DNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVH 250
             + S     S                    S Y+ +     ++++NQ +T   S KDV 
Sbjct: 214 --SLSETPARSQTAT----------------SVYSKQNPFRAEVLENQKITGRNSKKDVR 255

Query: 251 HFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIH 310
           H E +   + + YE GD L +    DPA V   ++  NLDPD  +T+  K +        
Sbjct: 256 HIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIGGKTI-------- 307

Query: 311 KNTTEVPIK--LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDL 368
                 P+   L T  ELT +       +   E  +     +  K  +         + L
Sbjct: 308 ------PLFEALITHFELTQNT------KPLLEAYAELTGNKELKALI------ADNEKL 349

Query: 369 YKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVV 428
             Y Q     +++++ D+P   +  + L+ L+ PL  R +SISSS     ++VHLTV VV
Sbjct: 350 KAYIQN--TPLIDLIRDYP-ADLDAEQLISLLRPLTPRLYSISSSQSEVGDEVHLTVGVV 406

Query: 429 SWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAP 486
            +   + R R G  S +LA    ++G  +P + +     R P  P  P+I+IGPGTG AP
Sbjct: 407 RYQA-HGRARLGGASGFLAE-RLKEGDTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAP 464

Query: 487 FRGFVEERAIQSSSGPAAPIIFFFGCRN-EDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 545
           FR F++ERA   + G       FFG  +   DFLY+  W  + L  GV ++       +A
Sbjct: 465 FRAFMQERAEDGAKGKNW---LFFGNPHFTTDFLYQVEW-QNYLKKGVLTKMD-----LA 515

Query: 546 FSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEAS 605
           FSR Q +K+YVQH++ EQ   +W  L   A IYV G A KM  DV     +I++KEG   
Sbjct: 516 FSRDQAEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLD 575

Query: 606 RDSAANWLKALQRAGRY 622
            + A  +L  L+   RY
Sbjct: 576 AEEAEEYLTDLRVEKRY 592

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase. Length = 597

>gnl|CDD|99796 cd06199, SiR, Cytochrome p450- like alpha subunits of E

 Score =  272 bits (699), Expect = 3e-86
 Identities = 126/394 (31%), Positives = 191/394 (48%), Gaps = 47/394 (11%)

Query: 235 IKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDAL 294
           ++N+ LT  GS K+  H E +   + + YE GD L + P+ DPA VD  +    L  D  
Sbjct: 3   LENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEP 62

Query: 295 ITVQHKEMKNYLPDIHKNTTEVPIK--LRTFVELTMDVTSASPRRYFFEVMSYFATAEH- 351
           ++                   +P++  L    E+T      +       + SY A     
Sbjct: 63  VSTVGGG-------------TLPLREALIKHYEIT------TLLLAL--LESYAADTGAL 101

Query: 352 EKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSIS 411
           E   L    +     +L        R VL++L   P  ++  + L+ L+ PL+ R +SI+
Sbjct: 102 ELLALAALEAVLAFAEL--------RDVLDLLPIPP-ARLTAEELLDLLRPLQPRLYSIA 152

Query: 412 SSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP- 470
           SSP A P++VHLTV+VV + + + R+R G+ S +LA    ++G  +P + Q     R P 
Sbjct: 153 SSPKAVPDEVHLTVAVVRYES-HGRERKGVASTFLADR-LKEGDTVPVFVQPNPHFRLPE 210

Query: 471 -PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHS 528
            P  P+I++GPGTG APFR F++ER    + G       FFG R+   DFLY++      
Sbjct: 211 DPDAPIIMVGPGTGIAPFRAFLQEREATGAKGKN---WLFFGERHFATDFLYQDELQQW- 266

Query: 529 LNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPS 588
           L DGV +         AFSR Q +KVYVQ +M EQ   +W  L   A  YV G A +M  
Sbjct: 267 LKDGVLTR-----LDTAFSRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAK 321

Query: 589 DVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY 622
           DV +   +I++ EG    + A  +LK L++  RY
Sbjct: 322 DVDAALLDIIATEGGMDEEEAEAYLKELKKEKRY 355

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. Length = 360

>gnl|CDD|99800 cd06203, methionine_synthase_red, Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

 Score =  238 bits (609), Expect = 2e-72
 Identities = 124/409 (30%), Positives = 196/409 (47%), Gaps = 39/409 (9%)

Query: 240 LTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQH 299
           LT+    K V     +      +Y+ GD + ILP    + V++ ++R  L   A    + 
Sbjct: 8   LTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEV 67

Query: 300 KEMKNYLP-------DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHE 352
           K + N           I K  T   I L   +++        P++     ++ F + ++E
Sbjct: 68  KVVPNTKKKNAKVPVHIPKVVTLRTI-LTWCLDIRA-----IPKKPLLRALAEFTSDDNE 121

Query: 353 KERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISS 412
           K RL+   S +G +D   + +K   ++L++LE FPS + P+  L++ +P L+ R +SI+S
Sbjct: 122 KRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCRPPLSLLIEHLPRLQPRPYSIAS 181

Query: 413 SPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL---DPQQGIYIPAWFQKGS---L 466
           SPL  P ++    SVV +         GLC+ WL  L       G+ +P + +  S   L
Sbjct: 182 SPLEGPGKLRFIFSVVEFPAK------GLCTSWLESLCLSASSHGVKVPFYLRSSSRFRL 235

Query: 467 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAP---IIFFFGCRNED-DFLYRE 522
           P      P+I++GPGTG APF GF++ R     S           FFGCR+ D D+L+R+
Sbjct: 236 PPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRD 295

Query: 523 LWLSHSLNDGVFSEAKGGGFYVAFSRKQ---PQKVYVQHKMLEQSQRIWNLLL-SKASIY 578
             L   L +G+ +        VAFSR +       YVQ K+ E+ +++ +LLL S A IY
Sbjct: 296 E-LEEFLEEGILTR-----LIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIY 349

Query: 579 VAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
           V G A  M  DV  TF +I+SKE    +  A   L  L++  RY  + W
Sbjct: 350 VCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLARLRKEDRYLEDVW 398

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 398

>gnl|CDD|99802 cd06206, bifunctional_CYPOR, These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

 Score =  236 bits (604), Expect = 7e-72
 Identities = 127/413 (30%), Positives = 193/413 (46%), Gaps = 51/413 (12%)

Query: 235 IKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDAL 294
           ++N+ LT  G G    H E   +   + Y  GD L +LP   P  V   ++R  L  D +
Sbjct: 3   VENRELTAPGVGPSKRHLELR-LPDGMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTV 61

Query: 295 ITVQHKEMKNYLPDIHKNTTEVPIK----LRTFVELTMDVTSASPRRYFFEVMSYFATAE 350
           +T+        LP         PI     L ++VEL+     A+ R+     ++      
Sbjct: 62  LTISASGSATGLP------LGTPISVSELLSSYVELS---QPATRRQ--LAALAEATRCP 110

Query: 351 HEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSI 410
             K  L+  A      ++      +R +VL++LE FPS+ +P+   + ++PP++ R +SI
Sbjct: 111 DTKALLERLAGEAYAAEV----LAKRVSVLDLLERFPSIALPLATFLAMLPPMRPRQYSI 166

Query: 411 SSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLAGLDPQQGIYI-----PAWFQKG 464
           SSSPL  P    LTVSV+       + R  G+ S +L+ L P   I++      + F   
Sbjct: 167 SSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSHSAF--- 223

Query: 465 SLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPA-APIIFFFGCRNED-DFLY 520
              RPP  PS PLI+I  GTG APFRGF++ERA   + G   AP + FFGCR+ D D LY
Sbjct: 224 ---RPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLY 280

Query: 521 RELWLSHSLNDGVFSEAKGGGFYVAFSRK--QPQKVYVQHKMLEQSQRIWNLLLSKASIY 578
           R+  L      GV S         A+SR      + YVQ ++  + + +W L    A +Y
Sbjct: 281 RDE-LEEWEAAGVVS------VRRAYSRPPGGGCR-YVQDRLWAEREEVWELWEQGARVY 332

Query: 579 VAGSATKMPSDVWSTFEEIVSKEGEASRDS----AANWLKALQRAGRYHVEAW 627
           V G   +M   V    + I +++ E    S    A  WL+ L+  GRY  + +
Sbjct: 333 VCGDG-RMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGRYATDVF 384

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 384

>gnl|CDD|99799 cd06202, Nitric_oxide_synthase, The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

 Score =  231 bits (591), Expect = 9e-70
 Identities = 128/384 (33%), Positives = 198/384 (51%), Gaps = 36/384 (9%)

Query: 261 IEYEVGDVLEILPSQDPAAVDTFIQR-CNL-DPDALITVQHKEMKNYLPDIHKNTTE--- 315
           + Y+ GD + I P+  P  VD  + R  +   PD +I ++  E ++    I K  T    
Sbjct: 30  LHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGIIKTWTPHER 89

Query: 316 -VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQK 374
             P  LR  +   +D+T+  P     ++++  AT E +KERL+         + +K+   
Sbjct: 90  LPPCTLRQALTRYLDITT-PPTPQLLQLLATLATDEKDKERLEVLGKGSSEYEDWKW--Y 146

Query: 375 ERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY 434
           +   +LEVLE+FPS+Q+P   L+  +P L+ R +SISSSP  +P ++HLTV+VVS+ T  
Sbjct: 147 KNPNILEVLEEFPSLQVPASLLLTQLPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRT-- 204

Query: 435 KRK-----RTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPF 487
            R        G+CS WL GL P  G  +P + +       P  PSVP+I++GPGTG APF
Sbjct: 205 -RDGQGPVHHGVCSTWLNGLTP--GDTVPCFVRSAPSFHLPEDPSVPVIMVGPGTGIAPF 261

Query: 488 RGFVEERAI-----QSSSGPAAPIIFFFGCRN-EDDFLYRELWLSHSLNDGVFSEAKGGG 541
           R F ++R       +        +  FFGCRN   D +Y+E     + N GV +E     
Sbjct: 262 RSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEE-TEEAKNKGVLTE----- 315

Query: 542 FYVAFSRKQPQ-KVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVS 599
            Y A SR+  + K YVQ  + EQ++ +++ L+     IYV G  T M  DV  T + I++
Sbjct: 316 VYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGDVT-MAEDVSQTIQRILA 374

Query: 600 KEGEASRDSAANWLKALQRAGRYH 623
           + G  S + A  ++  L+   RYH
Sbjct: 375 EHGNMSAEEAEEFILKLRDENRYH 398

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation. Length = 406

>gnl|CDD|235745 PRK06214, PRK06214, sulfite reductase; Provisional

 Score =  223 bits (569), Expect = 3e-65
 Identities = 128/396 (32%), Positives = 187/396 (47%), Gaps = 48/396 (12%)

Query: 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPD 292
             +  + L K GS K+  H E +   + ++YEVGD L + P+ DPA VD  I      P+
Sbjct: 172 TFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPE 231

Query: 293 ALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVE-LTMDVTSASPRRYFFEVMSYFATAEH 351
                                   PI  +T  E L  DV+        FE++SY  T   
Sbjct: 232 -----------------------FPIGGKTLREALLEDVSLGPAPDGLFELLSYI-TGGA 267

Query: 352 EKERLQYFASPEGRD-DLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSI 410
            +++ +  A+ E  D D    +      VL  LE FP ++   +  V+ + PL+ R +SI
Sbjct: 268 ARKKARALAAGEDPDGDAATLD------VLAALEKFPGIRPDPEAFVEALDPLQPRLYSI 321

Query: 411 SSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG---SL 466
           SSSP A P +V LTV  V +     R R G+ S +L   L P  G  +  + QK    +L
Sbjct: 322 SSSPKATPGRVSLTVDAVRYEIG-SRLRLGVASTFLGERLAP--GTRVRVYVQKAHGFAL 378

Query: 467 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLS 526
           P   P+ P+I++GPGTG APFR F+ ERA  ++  P    +FF   R+  DF Y +  L+
Sbjct: 379 P-ADPNTPIIMVGPGTGIAPFRAFLHERA--ATKAPGRNWLFFGHQRSATDFFYED-ELN 434

Query: 527 HSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKM 586
                GV +        +A+SR   +K YVQ +M E    +W  L   A  YV G A +M
Sbjct: 435 GLKAAGVLTR-----LSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRM 489

Query: 587 PSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY 622
             DV     +IV++ G  S D A  ++  L++AGRY
Sbjct: 490 AKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRY 525

Length = 530

>gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

 Score =  210 bits (537), Expect = 1e-63
 Identities = 97/231 (41%), Positives = 129/231 (55%), Gaps = 13/231 (5%)

Query: 402 PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF 461
           PL+ R +SI+SSP   P +VHL V VVS+  P  R R G+CS +LAGL     +    + 
Sbjct: 45  PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGAKV--TVFI 102

Query: 462 QKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPA-APIIFFFGCRN-EDD 517
           +     R P  P+ P+I++GPGTG APFRGF++ERA   ++G A  P   FFGCRN   D
Sbjct: 103 RPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASD 162

Query: 518 FLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLLLSKAS 576
           +LYRE     +L DG  +        VAFSR+Q   KVYVQ K+ E ++ +  LL   A 
Sbjct: 163 YLYREELQ-EALKDGALTR-----LDVAFSREQAEPKVYVQDKLKEHAEELRRLLNEGAH 216

Query: 577 IYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
           IYV G A  M  DV     +I++K G      A  +LK L+  GRY  + W
Sbjct: 217 IYVCGDAKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 267

>gnl|CDD|182862 PRK10953, cysJ, sulfite reductase subunit alpha; Provisional

 Score =  205 bits (523), Expect = 5e-58
 Identities = 167/628 (26%), Positives = 269/628 (42%), Gaps = 114/628 (18%)

Query: 11  ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP 70
           ++ ASQTGNA   AE++  +       V +    DY  + + +E  +I V ST G+G+ P
Sbjct: 66  LISASQTGNARRVAEQLRDDLLAAKLNVNLVNAGDYKFKQIAQEKLLIVVTSTQGEGEPP 125

Query: 71  DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130
           +      +FL  K   K  LE   +AVFGLGD+ Y+ F    K  D++L +LGA  +++R
Sbjct: 126 EEAVALHKFLFSKKAPK--LENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDR 183

Query: 131 GLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSI 190
              D +    Y+ A   W   +   L    P+                            
Sbjct: 184 VDADVE----YQAAASEWRARVVDALKSRAPA---------------------------- 211

Query: 191 DNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVH 250
                             Q     +++    S Y+ +A     +  NQ +T   S KDV 
Sbjct: 212 -------------VAAPSQSVATGAVNEIHTSPYSKEAPLTASLSVNQKITGRNSEKDVR 258

Query: 251 HFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIH 310
           H E +   + + Y+ GD L +    DPA V   ++   L  D  +TV  K +        
Sbjct: 259 HIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTL-------- 310

Query: 311 KNTTEVPIK--LRTFVELTMDVTSASPRRYFFEVMSYFATAEHE--------KERLQYFA 360
                 P+   L+   ELT++  +         V +Y      E        K  LQ++A
Sbjct: 311 ------PLAEALQWHFELTVNTANI--------VENYATLTRSETLLPLVGDKAALQHYA 356

Query: 361 SPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQ 420
                             +++++   P+ Q+  + L+ L+ PL  R +SI+SS     N+
Sbjct: 357 --------------ATTPIVDMVRFAPA-QLDAEQLIGLLRPLTPRLYSIASSQAEVENE 401

Query: 421 VHLTVSVVSWTTPYKRKRTGLCSVWLA---GLDPQQGIYIPAWFQKGSLPRPP--PSVPL 475
           VH+TV VV +     R R G  S +LA     + +  ++I    +     R P  P  P+
Sbjct: 402 VHITVGVVRYDIE-GRARAGGASSFLADRLEEEGEVRVFI----EHNDNFRLPANPETPV 456

Query: 476 ILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRN-EDDFLYRELWLSHSLNDGVF 534
           I+IGPGTG APFR F+++RA   + G       FFG  +  +DFLY+  W  + + +G+ 
Sbjct: 457 IMIGPGTGIAPFRAFMQQRAADGAPGKNW---LFFGNPHFTEDFLYQVEWQRY-VKEGLL 512

Query: 535 SEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF 594
           +        +A+SR Q +K+YVQ K+ EQ   +W  +   A IYV G A +M  DV    
Sbjct: 513 TRID-----LAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQAL 567

Query: 595 EEIVSKEGEASRDSAANWLKALQRAGRY 622
            E++++ G    ++A  +L  L+   RY
Sbjct: 568 LEVIAEFGGMDTEAADEFLSELRVERRY 595

Length = 600

>gnl|CDD|216051 pfam00667, FAD_binding_1, FAD binding domain

 Score =  184 bits (468), Expect = 3e-54
 Identities = 73/223 (32%), Positives = 125/223 (56%), Gaps = 6/223 (2%)

Query: 223 NYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDT 282
            ++ K      ++ N+ LT  GS +   H E +   + + Y+ GD L + PS D   V+ 
Sbjct: 1   PFDAKNPFLASVVVNRELTSPGSDRSCIHLELDISGSGLRYQTGDHLGVYPSNDEELVEE 60

Query: 283 FIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEV 342
            ++   LDPD +++++  + +         TT     LR  +   +++T   P +   E 
Sbjct: 61  LLELLGLDPDTVVSLEALDERWVKHPFPPPTT-----LRQALTYYLEITGP-PTKQLLEA 114

Query: 343 MSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPP 402
           ++ +A+ E EK+RL+  +S  G+ +  ++   + RT+LEVLE+FPS Q+P ++L++L+P 
Sbjct: 115 LAQYASDEEEKQRLEKLSSDAGKQEYKEWKLNKARTLLEVLEEFPSAQLPAEFLLELLPR 174

Query: 403 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW 445
           L+ R +SISSSP  HPN+VH+TV VV + T   R R G+ S W
Sbjct: 175 LQPRYYSISSSPKVHPNEVHVTVVVVEYETGEGRIRKGVASNW 217

This domain is found in sulfite reductase, NADPH cytochrome P450 reductase, Nitric oxide synthase and methionine synthase reductase. Length = 217

>gnl|CDD|215823 pfam00258, Flavodoxin_1, Flavodoxin

 Score =  142 bits (361), Expect = 4e-40
 Identities = 64/142 (45%), Positives = 79/142 (55%), Gaps = 4/142 (2%)

Query: 11  ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-ARCLPEEDTVIFVVSTTGQGDT 69
           I Y SQTGN    AE +    +  G  VVV  +DD D    + EED V+FV ST G G+ 
Sbjct: 1   IFYGSQTGNTEKLAEALAEGLKEAGFEVVVVSLDDVDETEEILEEDLVLFVTSTYGDGEP 60

Query: 70  PDSMKVFWRFLLQKS--LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           PD+ K F  +LL     L    L G+RYAVFGLGDSGY+ F + AKKLD +L +LGA  V
Sbjct: 61  PDNAKPFEDWLLLFGLPLEGGDLSGLRYAVFGLGDSGYEGFCWAAKKLDEKLAELGAKRV 120

Query: 128 VERGLGDDQHP-SGYEGALDPW 148
              G GD+       E A + W
Sbjct: 121 GPLGEGDEDTQEDDLEEAFEAW 142

Length = 142

>gnl|CDD|99804 cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

 Score =  105 bits (264), Expect = 4e-25
 Identities = 66/235 (28%), Positives = 98/235 (41%), Gaps = 22/235 (9%)

Query: 402 PLKTRAFSISSSPLA---HPNQVHLTVS-VVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI 457
           P K R +SI+SS          + L V  +V         + G+CS +L  L P   + I
Sbjct: 61  PHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQI 120

Query: 458 PAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAP--IIFFFGCRNE 515
                K  L    P+  LI+I  GTG APFR F+     +  +          FFG  N 
Sbjct: 121 TGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNS 180

Query: 516 DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLL 571
           D  LY +    +                 AFSR+Q      K+YVQ ++ E ++ IWNLL
Sbjct: 181 DSLLYDDELEKYPKQYPDNFR-----IDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLL 235

Query: 572 LS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVE 625
                 +Y+ G    M   V       V++ G A  +    + ++L++ GR+HVE
Sbjct: 236 DKDNTHVYICG-LKGMEPGVDDALTS-VAEGGLAWEE----FWESLKKKGRWHVE 284

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 286

>gnl|CDD|99797 cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E

 Score =  102 bits (257), Expect = 1e-24
 Identities = 69/240 (28%), Positives = 93/240 (38%), Gaps = 35/240 (14%)

Query: 392 PIDW----LVQLVP--PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW 445
              W    + ++ P  PL  R +SI+S P      + L V  V           GL S W
Sbjct: 29  GAQWQAGDIAEIGPRHPLPHREYSIASLP--ADGALELLVRQVRHAD----GGLGLGSGW 82

Query: 446 LAGLDPQQGIYIPAWFQKG-SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAA 504
           L    P  G  +    ++      P    PLILIG GTG A  R  +  RA         
Sbjct: 83  LTRHAPI-GASVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARAGRHRNW- 140

Query: 505 PIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQ 563
                FG R    DF  RE  L      G  +        +AFSR Q QK YVQ ++   
Sbjct: 141 ---LLFGERQAAHDFFCREE-LEAWQAAGHLARLD-----LAFSRDQAQKRYVQDRLRAA 191

Query: 564 SQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
           +  +   +   A+IYV GS   M   V +  +EI+ +E           ++AL  AGRY 
Sbjct: 192 ADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDEILGEEA----------VEALLAAGRYR 241

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 245

>gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 31/198 (15%)

Query: 393 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQ 452
           +D  +        RA+SI+SSP     ++ LTV         K    G  S WL  L P 
Sbjct: 29  VDLHLPGDGRGLRRAYSIASSPDE-EGELELTV---------KIVPGGPFSAWLHDLKPG 78

Query: 453 Q-----GIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPII 507
                 G     +           S P++LI  G G  PFR  +   A   +  P   I 
Sbjct: 79  DEVEVSGPGGDFF------LPLEESGPVVLIAGGIGITPFRSMLRHLA---ADKPGGEIT 129

Query: 508 FFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRI 567
             +G R   D L+ +     +     F         +A SR+   K+    ++  +++ +
Sbjct: 130 LLYGARTPADLLFLDELEELAKEGPNFR------LVLALSRESEAKLGPGGRIDREAEIL 183

Query: 568 WNLLLSKAS-IYVAGSAT 584
             L     + +Y+ G   
Sbjct: 184 ALLPDDSGALVYICGPPA 201

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223

>gnl|CDD|99798 cd06201, SiR_like2, Cytochrome p450- like alpha subunits of E

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 31/211 (14%)

Query: 396 LVQLVPPLKT--RAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQ 453
           L+ ++PP     R +S++SS  +    + + V         ++   GLCS +L GL P  
Sbjct: 89  LLGILPPGSDVPRFYSLASS--SSDGFLEICV---------RKHPGGLCSGYLHGLKP-- 135

Query: 454 GIYIPAWFQKGSLPRPPPS-VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGC 512
           G  I A+ +     RP     P+ILIG GTG AP  GF+   A +       P+  ++G 
Sbjct: 136 GDTIKAFIRPNPSFRPAKGAAPVILIGAGTGIAPLAGFIRANAARR------PMHLYWGG 189

Query: 513 RNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLL 571
           R+   DFLY +  L   L DG  +       + AFSR  P   YVQ ++   ++R+  L+
Sbjct: 190 RDPASDFLYED-ELDQYLADGRLT-----QLHTAFSRT-PDGAYVQDRLRADAERLRRLI 242

Query: 572 LSKASIYVAGSATKMPSDVWSTFEEIVSKEG 602
              A I V GS   M   V +  EEI++ + 
Sbjct: 243 EDGAQIMVCGS-RAMAQGVAAVLEEILAPQP 272

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 289

>gnl|CDD|223788 COG0716, FldA, Flavodoxins [Energy production and conversion]

 Score = 79.3 bits (196), Expect = 2e-17
 Identities = 42/154 (27%), Positives = 57/154 (37%), Gaps = 10/154 (6%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+LI+Y S+TGN    AE I  E    G  V +          L   D ++    T G G
Sbjct: 3   KILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKDDLLESYDELLLGTPTWGAG 62

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATA 126
           + PD    F   L           G   AVFGLGD  Y   F       ++ L + GA A
Sbjct: 63  ELPDDWYDFIEELEPIDFK-----GKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKA 117

Query: 127 V----VERGLGDDQHPSGYEGALDPWMRSLWRRL 156
           V        + D       E  +  W++ +   L
Sbjct: 118 VGILETLGYIFDASPNEEDEKRIKEWVKQILNEL 151

Length = 151

>gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain

 Score = 73.1 bits (180), Expect = 9e-16
 Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 477 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSE 536
           +I  GTG AP    ++             +   +G R EDD L RE            ++
Sbjct: 1   MIAGGTGIAPLYSVLKALLEDEDGTE---VYLVYGNRTEDDLLLREELEE-------LAK 50

Query: 537 AKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAG 581
                  VA SR       +K YV   +LE+     +  L    +YV G
Sbjct: 51  KYPNLKVVAVSRTDDGWYGRKGYVTDALLEEHL---SEDLGDTDVYVCG 96

Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. Length = 106

>gnl|CDD|215586 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 68/242 (28%), Positives = 98/242 (40%), Gaps = 32/242 (13%)

Query: 402 PLKTRAFSISSSPLAHP---NQVHLTVSVVSWTTPYKRK----RTGLCSVWLAGLDPQQG 454
           P   R +SI+S+            L V    +  P   K    + G+CS +L    P   
Sbjct: 78  PHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDK 137

Query: 455 IYIPAWFQKGSL-PRPPPSVPLILIGPGTGCAPFRG-----FVEERAIQSSSGPAAPIIF 508
           + I     K  L P   P+   I++  GTG APFRG     F+E+       G A     
Sbjct: 138 VQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAW---L 194

Query: 509 FFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY-VAFSRKQPQ----KVYVQHKMLEQ 563
           F G  N D  LY + +      +    +      Y  A SR+Q      K+YVQ K+ E 
Sbjct: 195 FLGVANSDSLLYDDEF------ERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEY 248

Query: 564 SQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
           S  I+ LL + A IY  G    MP  +  T + +  + GE    S    L  L++  ++H
Sbjct: 249 SDEIFKLLDNGAHIYFCGLKGMMPG-IQDTLKRVAEERGE----SWEEKLSGLKKNKQWH 303

Query: 624 VE 625
           VE
Sbjct: 304 VE 305

Length = 307

>gnl|CDD|181230 PRK08105, PRK08105, flavodoxin; Provisional

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 39/113 (34%), Positives = 53/113 (46%), Gaps = 3/113 (2%)

Query: 18  GNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFW 77
           GNAL  AE        +G  V +    +       +++ V+ V STTGQGD PDS+ V  
Sbjct: 13  GNALLVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDELVLVVTSTTGQGDLPDSI-VPL 71

Query: 78  RFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130
              L+ +    +   +RY V  LGDS Y  F    K+ D  L + GA  V ER
Sbjct: 72  FQALKDTAG--YQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGER 122

Length = 149

>gnl|CDD|233559 TIGR01753, flav_short, flavodoxin, short chain

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 46/134 (34%), Positives = 61/134 (45%), Gaps = 8/134 (5%)

Query: 10  LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDT 69
           LI+YAS TGN  + A  I    +  G  V +  V D DA  L   D V+   ST G  D 
Sbjct: 2   LIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDEDL 61

Query: 70  P-DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128
             D  + F+     + L    L G + A+FG GD GY+    V    + RL + GAT + 
Sbjct: 62  EQDDFEPFF-----EELEDIDLGGKKVALFGSGDWGYEFCEAV-DDWEERLKEAGATIIA 115

Query: 129 ERGLGDDQHPSGYE 142
           E GL  D  P   +
Sbjct: 116 E-GLKVDGDPEEED 128

Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction [Energy metabolism, Electron transport]. Length = 140

>gnl|CDD|235854 PRK06703, PRK06703, flavodoxin; Provisional

 Score = 65.6 bits (160), Expect = 1e-12
 Identities = 43/122 (35%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+LI YAS +GN  D A+ I    +     VV++ +D  DA  L   D +I    T G G
Sbjct: 3   KILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGSYTWGDG 62

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           D P   + F   L    LS     G + AVFG GD+ Y  F       + RL++ GA  V
Sbjct: 63  DLPYEAEDFHEDLENIDLS-----GKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELV 117

Query: 128 VE 129
            E
Sbjct: 118 QE 119

Length = 151

>gnl|CDD|181608 PRK09004, PRK09004, FMN-binding protein MioC; Provisional

 Score = 62.9 bits (154), Expect = 7e-12
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 51  LPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNF 110
           L      + V ST G GD PD+++ F+  L ++      L  VR+A  G+G S Y  F  
Sbjct: 44  LSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPD---LSQVRFAAIGIGSSEYDTFCG 100

Query: 111 VAKKLDNRLLDLGATAVVER 130
              KL+  L   GA  + E 
Sbjct: 101 AIDKLEQLLKAKGAKQIGET 120

Length = 146

>gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional

 Score = 62.7 bits (152), Expect = 2e-10
 Identities = 66/244 (27%), Positives = 103/244 (42%), Gaps = 36/244 (14%)

Query: 402 PLKTRAFSISSSPL---AHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 142 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKIT 201

Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++  GTG APFR F+     E+      +G A     F G  
Sbjct: 202 GPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAW---LFLGVP 258

Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF--SRKQP----QKVYVQHKMLEQSQRI 567
                LY+E +           E     F + F  SR+Q     +K+Y+Q +M E ++ +
Sbjct: 259 TSSSLLYKEEFEK-------MKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEEL 311

Query: 568 WNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYH 623
           W  LL K + YV     K M   +      + +K+G        +W    K L++A +++
Sbjct: 312 WE-LLKKDNTYVYMCGLKGMEKGIDDIMVSLAAKDG-------IDWFEYKKQLKKAEQWN 363

Query: 624 VEAW 627
           VE +
Sbjct: 364 VEVY 367

Length = 367

>gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein

 Score = 60.7 bits (147), Expect = 9e-10
 Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 27/235 (11%)

Query: 402 PLKTRAFSISS---SPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLAGLDPQQGIYI 457
           P   R +S++S         N + LTV  V  TT ++     G+ S +L  L     + +
Sbjct: 195 PHYARMYSVASPRNGERPGYNNLALTVKRV--TTDHQGNAVRGVASNYLCDLKKGDKVQV 252

Query: 458 PAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDD 517
              F    L    P   +++I  GTG AP R   E R  +   G    ++ FFG R +++
Sbjct: 253 IGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHGEGGKLMLFFGARTKEE 312

Query: 518 FLYRE--LWLSHSLNDGVFSEAKGGGFYVAFSR--KQPQKVYVQHKMLEQSQRIWNLLLS 573
             Y      L     D  F          AFSR  +QP++ YVQ  + E++  +  LL  
Sbjct: 313 LPYFGPLQKLPKDFIDINF----------AFSRTPEQPKR-YVQDAIRERAADVAALLKD 361

Query: 574 KAS-IYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
             + IY+ G    M   V   F ++ +  G +           L+  GR H+E +
Sbjct: 362 PNTYIYICG-LKGMEEGVLDAFRDVCATNGLSWETLEP----RLRAEGRLHLETY 411

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB [Energy metabolism, Other]. Length = 411

>gnl|CDD|168663 PRK06756, PRK06756, flavodoxin; Provisional

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPV-DDYDARCLPEEDTVIFVVSTTGQ 66
           KL++++AS +GN  + A+ I          + V  + D  +A  L + D +I    T G 
Sbjct: 3   KLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGAYTWGD 62

Query: 67  GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126
           GD PD    F+      ++    L G + AVFG  DS Y K+      L  +L + GA  
Sbjct: 63  GDLPDDFLDFY-----DAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAV 117

Query: 127 VVE 129
           V+E
Sbjct: 118 VLE 120

Length = 148

>gnl|CDD|99813 cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 21/121 (17%)

Query: 406 RAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPA---WF 461
           R++SI+SSP     +V LTV         KR   G  S +L   +     + +      F
Sbjct: 51  RSYSIASSPTQRG-RVELTV---------KRVPGGEVSPYLHDEVKVGDLLEVRGPIGTF 100

Query: 462 QKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYR 521
                  P    P++L+  G+G  P    +  R      G   P    +  R  +D ++R
Sbjct: 101 TW----NPLHGDPVVLLAGGSGIVPLMSMIRYRR---DLGWPVPFRLLYSARTAEDVIFR 153

Query: 522 E 522
           +
Sbjct: 154 D 154

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 235

>gnl|CDD|99785 cd06188, NADH_quinone_reductase, Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 17/151 (11%)

Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRK---RTGLCSVWLAGLDPQQGIYIPAWF 461
           +RA+S+++ P A   ++ L V      TP         G+ S ++  L P   +     F
Sbjct: 86  SRAYSLANYP-AEEGELKLNVR---IATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPF 141

Query: 462 QKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYR 521
             G          ++ IG G G AP R  +        S     I F++G R+  +  Y+
Sbjct: 142 --GEFFIKDTDREMVFIGGGAGMAPLRSHIFHLLKTLKSK--RKISFWYGARSLKELFYQ 197

Query: 522 ELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ 552
           E + +       F       ++   S  QP+
Sbjct: 198 EEFEALEKEFPNFK------YHPVLSEPQPE 222

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain. Length = 283

>gnl|CDD|180922 PRK07308, PRK07308, flavodoxin; Validated

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 11  ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP 70
           I+YAS TGN  + A+ +  +    G  V V      DA    + D  I    T G G+ P
Sbjct: 6   IVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASDFEDADIAIVATYTYGDGELP 65

Query: 71  DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
           D +  F+  L    LS     G  Y V G GD+ Y  F       + +    GAT
Sbjct: 66  DEIVDFYEDLADLDLS-----GKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGAT 115

Length = 146

>gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 27/163 (16%)

Query: 369 YKYNQKERRT----VLEVLEDFPSVQMPIDWLVQL-VPPLKTRAFSISSSPLAHPNQVHL 423
           YK  +KE  +    +L +   F ++       V L VP    R +S++S+P     ++ L
Sbjct: 10  YKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPGGVRRPYSLASAP-DDKGELEL 68

Query: 424 TVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL----PRPPPSVPLILIG 479
            + V            G  + ++ GL     I +     +G L     R     P++LI 
Sbjct: 69  HIRV---------YEVGKVTKYIFGLKEGDKIRV-----RGPLGNGFLREKIGKPVLLIA 114

Query: 480 PGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 522
            GTG AP     +E       G A  +   +G R   D L  +
Sbjct: 115 GGTGIAPLYAIAKELK---EKGDANKVTLLYGARTAKDLLLLD 154

Length = 252

>gnl|CDD|236439 PRK09267, PRK09267, flavodoxin FldA; Validated

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 11  ILYASQTGNALDAAERIGRESERRGCPVV-VRPVDDYDARCLPEEDTVIFVVSTTGQGDT 69
           I + S TGN  D A+ I    ++ G  V  V  +           D +I  + T G G+ 
Sbjct: 6   IFFGSDTGNTEDIAKMI---QKKLGKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGEL 62

Query: 70  PDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS-GYQKFNFVA--KKLDNRLLDLGATA 126
                  W   L + L +    G + A+FGLGD   Y +  F      L + +   GAT 
Sbjct: 63  QCD----WDDFLPE-LEEIDFSGKKVALFGLGDQEDYAE-YFCDAMGTLYDIVEPRGATI 116

Query: 127 V 127
           V
Sbjct: 117 V 117

Length = 169

>gnl|CDD|233558 TIGR01752, flav_long, flavodoxin, long chain

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 11/123 (8%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+ I Y + TGN    AE+I  + E     V V  +       L   D +I    T G G
Sbjct: 1   KIGIFYGTDTGNTEGIAEKI--QKELGEDDVDVFNIAKASKEDLNAYDKLILGTPTWGVG 58

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS-GYQKFNFVA--KKLDNRLLDLGA 124
           +  +  + F   L +   +     G   A+FGLGD  GY +  F      L +++   GA
Sbjct: 59  ELQEDWEDFLPTLEELDFT-----GKTVALFGLGDQEGYSE-TFCDGMGILYDKIKARGA 112

Query: 125 TAV 127
             V
Sbjct: 113 KVV 115

Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli [Energy metabolism, Electron transport]. Length = 167

>gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 21/125 (16%)

Query: 402 PLKTRAFSISSSPLAHPNQVHLTVSVVS--WTTPY--KRKRTGLCSVWLAGLDPQQGIYI 457
           P   RA+S ++ P     ++   V  V     +       + G   V L+G  P    Y+
Sbjct: 38  PRTWRAYSPANPP-NEDGEIEFHVRAVPGGRVSNALHDELKVG-DRVRLSG--PYGTFYL 93

Query: 458 PAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDD 517
                     R     P++ I  GTG AP R  VE+ A++       P+  FFG R E D
Sbjct: 94  ----------RRDHDRPVLCIAGGTGLAPLRAIVED-ALRRGEPR--PVHLFFGARTERD 140

Query: 518 FLYRE 522
               E
Sbjct: 141 LYDLE 145

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 224

>gnl|CDD|99791 cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 26/130 (20%)

Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQ------QGIYIP 458
            R++S +S P    N++   +         +RK  G  S WL            QG +  
Sbjct: 39  ARSYSPTSLP-DGDNELEFHI---------RRKPNGAFSGWLGEEARPGHALRLQGPFGQ 88

Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDF 518
           A+++      P     L+L+G GTG AP  G     A+    G    I    G R+ DD 
Sbjct: 89  AFYRPEYGEGP-----LLLVGAGTGLAPLWGIARA-AL--RQGHQGEIRLVHGARDPDDL 140

Query: 519 LYRE--LWLS 526
                 LWL+
Sbjct: 141 YLHPALLWLA 150

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 222

>gnl|CDD|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 30/127 (23%)

Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA---------GLDPQQGI 455
            R++S+SSSP      + LTV         K +  GL S WL           L   QG 
Sbjct: 64  WRSYSLSSSPTQEDGTITLTV---------KAQPDGLVSNWLVNHLAPGDVVELSQPQGD 114

Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNE 515
                F    LP P P   L+LI  G+G  P    +       + GP A ++  +  R  
Sbjct: 115 -----FV---LPDPLPP-RLLLIAAGSGITPVMSMLRTLL---ARGPTADVVLLYYARTR 162

Query: 516 DDFLYRE 522
           +D ++ +
Sbjct: 163 EDVIFAD 169

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 243

>gnl|CDD|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 34/169 (20%)

Query: 358 YFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAH 417
               P+G    ++  Q            + +V +P      L      RA+S+SS+P   
Sbjct: 24  TLEPPDGLRLDFEPGQ------------YITVGLPNGGEPLL------RAYSLSSAPDED 65

Query: 418 PNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPRPPPSVPLI 476
                  +SV       KR+  G  S WL   L     + + A      L   P    L+
Sbjct: 66  S---LYRISV-------KREDGGGGSNWLHDHLKVGDTLEVSAPAGDFVLDDLPER-KLL 114

Query: 477 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWL 525
           L+  G G  PF   +     +      A ++     R   D  +R+   
Sbjct: 115 LLAGGIGITPFLSMLRTLLDRG----PADVVLVHAARTPADLAFRDELE 159

Length = 266

>gnl|CDD|99808 cd06212, monooxygenase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 474 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 522
           P++LIG G+G AP    + +    ++SG   P+ FF+G R   D  Y E
Sbjct: 105 PIVLIGGGSGMAPLLSLLRD---MAASGSDRPVRFFYGARTARDLFYLE 150

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate. Length = 232

>gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 468 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLS 526
           R     PLILI  GTG AP +  +E    Q S     PI  ++G R E+D    EL  +
Sbjct: 94  REDSDRPLILIAGGTGFAPIKSILEHLLAQGSKR---PIHLYWGARTEEDLYLDELLEA 149

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. Length = 224

>gnl|CDD|99817 cd06221, sulfite_reductase_like, Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 20/119 (16%)

Query: 407 AFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 466
             SISS P      + LT+           +R G  +  L  L P   + +   F  G  
Sbjct: 45  PISISSDP-TRRGPLELTI-----------RRVGRVTEALHELKPGDTVGLRGPFGNGF- 91

Query: 467 PRPPPSV---PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 522
             P   +    L+L+  G G AP R  +    I  +      +   +G R  +D L++E
Sbjct: 92  --PVEEMKGKDLLLVAGGLGLAPLRSLI--NYILDNREDYGKVTLLYGARTPEDLLFKE 146

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. Length = 253

>gnl|CDD|99811 cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 20/123 (16%)

Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQK 463
            RA+++SSSP   P+ + +TV         KR   GL S WL   L    G  + A    
Sbjct: 46  YRAYTLSSSPSR-PDSLSITV---------KRVPGGLVSNWLHDNLKV--GDELWASGPA 93

Query: 464 G--SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYR 521
           G  +L   P    L+L+  G+G  P       R +   + P A I+F    R+  D ++ 
Sbjct: 94  GEFTLIDHPAD-KLLLLSAGSGITPMMSMA--RWLL-DTRPDADIVFIHSARSPADIIFA 149

Query: 522 -EL 523
            EL
Sbjct: 150 DEL 152

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 231

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	628
KOG1159	574	consensus NADP-dependent flavoprotein reductase [E	100.0
PRK10953	600	cysJ sulfite reductase subunit alpha; Provisional	100.0
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	100.0
COG0369	587	CysJ Sulfite reductase, alpha subunit (flavoprotei	100.0
KOG1158	645	consensus NADP/FAD dependent oxidoreductase [Energ	100.0
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	100.0
cd06203	398	methionine_synthase_red Human methionine synthase	100.0
cd06207	382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	100.0
cd06202	406	Nitric_oxide_synthase The ferredoxin-reductase (FN	100.0
cd06206	384	bifunctional_CYPOR These bifunctional proteins fus	100.0
cd06199	360	SiR Cytochrome p450- like alpha subunits of E. col	100.0
PRK06214	530	sulfite reductase; Provisional	100.0
PF00667	219	FAD_binding_1: FAD binding domain; InterPro: IPR00	100.0
PLN03115	367	ferredoxin--NADP(+) reductase; Provisional	100.0
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	100.0
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	100.0
cd06208	286	CYPOR_like_FNR These ferredoxin reductases are rel	100.0
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	100.0
cd06200	245	SiR_like1 Cytochrome p450- like alpha subunits of	100.0
PLN03116	307	ferredoxin--NADP+ reductase; Provisional	100.0
PRK09004	146	FMN-binding protein MioC; Provisional	100.0
PRK08105	149	flavodoxin; Provisional	100.0
PRK05723	151	flavodoxin; Provisional	100.0
PRK07308	146	flavodoxin; Validated	99.95
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	99.94
PF00258	143	Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This	99.94
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	99.93
PRK10926	248	ferredoxin-NADP reductase; Provisional	99.93
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	99.93
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	99.93
PRK08051	232	fre FMN reductase; Validated	99.93
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	99.93
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	99.93
PRK06703	151	flavodoxin; Provisional	99.93
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	99.93
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	99.93
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	99.93
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	99.93
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	99.93
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	99.92
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	99.92
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	99.92
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	99.92
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	99.92
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	99.92
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	99.92
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	99.92
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	99.92
PRK05713	312	hypothetical protein; Provisional	99.91
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	99.91
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	99.91
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	99.91
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	99.9
PRK06756	148	flavodoxin; Provisional	99.9
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	99.9
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	99.9
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	99.89
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	99.89
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	99.89
PRK08221	263	anaerobic sulfite reductase subunit B; Provisional	99.89
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	99.89
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	99.89
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	99.89
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	99.89
PTZ00274	325	cytochrome b5 reductase; Provisional	99.88
PRK09271	160	flavodoxin; Provisional	99.88
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	99.88
TIGR02911	261	sulfite_red_B sulfite reductase, subunit B. Member	99.88
TIGR01753	140	flav_short flavodoxin, short chain. Flavodoxins ar	99.87
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	99.87
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	99.87
PRK12359	172	flavodoxin FldB; Provisional	99.86
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	99.86
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	99.86
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	99.86
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	99.85
TIGR01754	140	flav_RNR ribonucleotide reductase-associated flavo	99.85
COG0716	151	FldA Flavodoxins [Energy production and conversion	99.85
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	99.84
TIGR01752	167	flav_long flavodoxin, long chain. Flavodoxins are	99.84
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.83
PRK05802	320	hypothetical protein; Provisional	99.83
PLN02252	888	nitrate reductase [NADPH]	99.82
KOG0534	286	consensus NADH-cytochrome b-5 reductase [Coenzyme	99.81
PRK09267	169	flavodoxin FldA; Validated	99.8
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.79
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	99.79
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.78
KOG1160	601	consensus Fe-S oxidoreductase [Energy production a	99.78
cd06193	235	siderophore_interacting Siderophore interacting pr	99.75
cd06186	210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	99.74
PRK11921	394	metallo-beta-lactamase/flavodoxin domain-containin	99.73
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.73
TIGR00333	125	nrdI ribonucleoside-diphosphate reductase 2, opero	99.71
PRK05569	141	flavodoxin; Provisional	99.71
PRK05568	142	flavodoxin; Provisional	99.7
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.7
PF00175	109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	99.69
PRK05452	479	anaerobic nitric oxide reductase flavorubredoxin;	99.69
PRK03600	134	nrdI ribonucleotide reductase stimulatory protein;	99.58
PRK06242	150	flavodoxin; Provisional	99.52
PRK02551	154	flavoprotein NrdI; Provisional	99.5
PLN02292	702	ferric-chelate reductase	99.5
PLN02844	722	oxidoreductase/ferric-chelate reductase	99.49
PLN02631	699	ferric-chelate reductase	99.49
PRK11104	177	hemG protoporphyrinogen oxidase; Provisional	99.48
PRK03767	200	NAD(P)H:quinone oxidoreductase; Provisional	99.39
TIGR01755	197	flav_wrbA NAD(P)H:quinone oxidoreductase, type IV.	99.34
COG0426	388	FpaA Uncharacterized flavoproteins [Energy product	99.33
PRK07116	160	flavodoxin; Provisional	99.15
PF07972	122	Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro:	99.13
PF12724	143	Flavodoxin_5: Flavodoxin domain	99.13
KOG3378	385	consensus Globins and related hemoproteins [Energy	99.13
COG4635	175	HemG Flavodoxin [Energy production and conversion	99.11
COG1780	141	NrdI Protein involved in ribonucleotide reduction	99.04
PF12641	160	Flavodoxin_3: Flavodoxin domain	99.03
PF03358	152	FMN_red: NADPH-dependent FMN reductase; InterPro:	98.73
PF12682	156	Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.	98.54
PRK10569	191	NAD(P)H-dependent FMN reductase; Provisional	98.48
PF08030	156	NAD_binding_6: Ferric reductase NAD binding domain	98.46
TIGR03567	171	FMN_reduc_SsuE FMN reductase, SsuE family. Members	98.42
PF00970	99	FAD_binding_6: Oxidoreductase FAD-binding domain;	98.39
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.35
PRK00170	201	azoreductase; Reviewed	98.24
PRK06934	221	flavodoxin; Provisional	98.2
KOG0039	646	consensus Ferric reductase, NADH/NADPH oxidase and	98.2
TIGR03566	174	FMN_reduc_MsuE FMN reductase, MsuE subfamily. Memb	98.15
PRK01355	199	azoreductase; Reviewed	98.13
PRK09739	199	hypothetical protein; Provisional	98.09
COG0655	207	WrbA Multimeric flavodoxin WrbA [General function	98.02
PF02525	199	Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR0	97.93
PRK13556	208	azoreductase; Provisional	97.83
TIGR02690	219	resist_ArsH arsenical resistance protein ArsH. Mem	97.63
COG2375	265	ViuB Siderophore-interacting protein [Inorganic io	97.52
PRK04930	184	glutathione-regulated potassium-efflux system anci	97.16
KOG3135	203	consensus 1,4-benzoquinone reductase-like; Trp rep	97.1
PRK13555	208	azoreductase; Provisional	97.01
COG0431	184	Predicted flavoprotein [General function predictio	95.95
PRK00871	176	glutathione-regulated potassium-efflux system anci	94.75
COG2249	189	MdaB Putative NADPH-quinone reductase (modulator o	93.05
PF08021	117	FAD_binding_9: Siderophore-interacting FAD-binding	92.74
PF08022	105	FAD_binding_8: FAD-binding domain; InterPro: IPR01	91.28
PF09314	185	DUF1972: Domain of unknown function (DUF1972); Int	89.1
KOG0560	638	consensus Sulfite reductase (ferredoxin) [Inorgani	87.78
KOG4530	199	consensus Predicted flavoprotein [General function	84.56
PRK02261	137	methylaspartate mutase subunit S; Provisional	81.04

>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]

Probab=100.00  E-value=2.6e-119  Score=927.59  Aligned_cols=571  Identities=46%  Similarity=0.774  Sum_probs=505.4

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS   86 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~   86 (628)
                      |+|+|+||||||||+.+|+.|.+++.++|+.+.+..++++++++|.+..+|||+|||+|+|++|+||+.||+.|.+++++
T Consensus         1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~~~~~~V~s~Deyd~~~ll~~~~vvFVcSTTGqGe~P~Nmk~~WrfL~rknLp   80 (574)
T KOG1159|consen    1 MKILILYGSQTGTAQDVAESLGREAHRRGLQCLVMSMDEYDVEKLLDERLVVFVCSTTGQGEEPDNMKKFWRFLLRKNLP   80 (574)
T ss_pred             CceEEEeecCcccHHHHHHHHHHHHHhccCCceEeeccccCHhHhccCceEEEEEecCCCCCCCccHHHHHHHHhhccch
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCCCCCC
Q 006868           87 KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQ  166 (628)
Q Consensus        87 ~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~~~  166 (628)
                      ...|++++|||||||||+|++||.++|+++++|.+|||+.+++.+++|++++.|.+..|..|..++|..|...+++  .-
T Consensus        81 s~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~i~~p--~~  158 (574)
T KOG1159|consen   81 STILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKGIYPP--YR  158 (574)
T ss_pred             HHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHhhcCC--CC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988772  11


Q ss_pred             CCCcccccccccCCCceEEEEecccccccccccccchhhhhhhhhhhhccccccccCcCCCccceeeeeeeeecCCCCCC
Q 006868          167 GPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSG  246 (628)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~lt~~~~~  246 (628)
                       ....+..+.. .+++|++-.....   +.++....+            +++..     ..|   .+++.|++||+++|+
T Consensus       159 -~~t~l~~~~~-~~~k~~~l~~~~~---~~~~d~~~v------------~~~~~-----~~~---~k~~~N~rlT~~~Hf  213 (574)
T KOG1159|consen  159 -PETDLIPTVQ-ITTKYSLLELGKA---SDFSDSDIV------------LEPQG-----QIP---AKLVENRRLTSADHF  213 (574)
T ss_pred             -CcccCCCccc-ccchhhhhhcccc---ccCCcchhh------------hcccc-----ccc---cchhcceeecCcchh
Confidence             1111212222 2334443221111   011110100            00000     011   189999999999999


Q ss_pred             CcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCCccccccHHHHHHh
Q 006868          247 KDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVEL  326 (628)
Q Consensus       247 ~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~~~~~~tl~~~l~~  326 (628)
                      ++|+|++|+++++.+.|+|||++.|+|.|+.+.|++|++.+||++++...+.+....+.-|   .+.++.|+|+++++++
T Consensus       214 QDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~~~~---~~~~~~p~sl~~~lk~  290 (574)
T KOG1159|consen  214 QDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDRSSP---LPLLPNPLSLLNLLKY  290 (574)
T ss_pred             heeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCccccc---ccccCCchhHHHHHHH
Confidence            9999999999988999999999999999999999999999999998555554433221111   1246699999999999


Q ss_pred             ccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHHHhcCCCccc
Q 006868          327 TMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTR  406 (628)
Q Consensus       327 ~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~~~lp~~~~R  406 (628)
                      |+||++ +|+++||..|++|++|+.||++|+++++++|.++|++|+.+++||++|+|++|+++++|.+++++.+|.++||
T Consensus       291 ~~D~~S-vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~~P~IrPR  369 (574)
T KOG1159|consen  291 VLDFNS-VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDLLPVIRPR  369 (574)
T ss_pred             hccccc-CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHhccccccc
Confidence            999999 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCC-CCCCCEEEEeCCCChH
Q 006868          407 AFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PPSVPLILIGPGTGCA  485 (628)
Q Consensus       407 ~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp-~~~~piimIa~GtGIA  485 (628)
                      +|||||+|..  ..++|+|++|+|+|..++.|.|+||+||++|++  |+.|.+.+.+|.+..| +.++|+||||+|||||
T Consensus       370 ~fSIas~~~~--~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~--g~~i~~~v~~g~l~~p~~~~~PlImVGPGTGvA  445 (574)
T KOG1159|consen  370 AFSIASSPGA--HHLELLVAIVEYKTILKEPRRGLCSNWLASLKP--GDEIPIKVRPGTLYFPSDLNKPLIMVGPGTGVA  445 (574)
T ss_pred             eeeeccCCCC--CceeEEEEEEEEeeeccccccchhHHHHhhcCC--CCeEEEEEecCccccCCCCCCCeEEEcCCCCcc
Confidence            9999999943  349999999999999999999999999999999  9999999999999999 7799999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhHHHcH
Q 006868          486 PFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQS  564 (628)
Q Consensus       486 Pfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~  564 (628)
                      ||||++++|..++.    .+..||||||+++ ||+|.+||.+..+.          ..+.|||||+++|.||||.|++.+
T Consensus       446 PfRa~i~er~~q~~----~~~~lFfGCR~K~~Df~y~~eW~~~~~~----------~~~~AFSRDqe~kvYVQh~i~e~g  511 (574)
T KOG1159|consen  446 PFRALIQERIYQGD----KENVLFFGCRNKDKDFLYEDEWTELNKR----------AFHTAFSRDQEQKVYVQHKIRENG  511 (574)
T ss_pred             cHHHHHHHHHhhcc----CCceEEEecccCCccccccchhhhhhcc----------hhhhhcccccccceeHHHHHHHhh
Confidence            99999999998554    5669999999999 99999999998877          445699999999999999999999


Q ss_pred             HHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868          565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       565 ~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                      ..+|+++.+ ||.+||||+++.|+.+|+++|.+|+++.++.+.|.|. ||+.|++++||+.|+|
T Consensus       512 ~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW  574 (574)
T KOG1159|consen  512 EEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW  574 (574)
T ss_pred             HHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence            999999985 9999999999999999999999999999999777777 9999999999999999

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional

Probab=100.00  E-value=5.5e-105  Score=891.99  Aligned_cols=536  Identities=29%  Similarity=0.483  Sum_probs=471.9

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS   84 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~   84 (628)
                      +|++++|+|||||||||.+|++|++.+.+.|+.+.+.+++++++.+|.+++.+||++||||+|++|+|+..||++|...+
T Consensus        60 ~~~~v~IlygSqTGnae~lA~~la~~l~~~g~~~~v~~~~d~~~~~L~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~  139 (600)
T PRK10953         60 EMPGITLISASQTGNARRVAEQLRDDLLAAKLNVNLVNAGDYKFKQIAQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKK  139 (600)
T ss_pred             CCCeEEEEEEcCchHHHHHHHHHHHHHHhCCCCcEEechHhCCHhHhccCCeEEEEECCCCCCCCChhHHHHHHHHhhCc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999997655


Q ss_pred             CcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCCCC
Q 006868           85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF  164 (628)
Q Consensus        85 ~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~  164 (628)
                      .+.  |.|++||||||||++|++||.++|.++++|+++||+++.+++++|..    +++.+++|.+++|+.|.+..+  .
T Consensus       140 ~~~--L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~~----~e~~~~~W~~~~~~~l~~~~~--~  211 (600)
T PRK10953        140 APK--LENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADVE----YQAAASEWRARVVDALKSRAP--A  211 (600)
T ss_pred             CcC--CCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeecccccccc----cHHHHHHHHHHHHHHHHhhcC--C
Confidence            443  99999999999999999999999999999999999999999888754    788999999999999976554  1


Q ss_pred             CCCCCcccccccccCCCceEEEEecccccccccccccchhhhhhhhhhhhccccccccCcCCCcccee-eeeeeeecCCC
Q 006868          165 PQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTKS  243 (628)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~lt~~  243 (628)
                      .. .  ..  .   .......    .. .                 .  .        ..+....+|. +|+.|++||++
T Consensus       212 ~~-~--~~--~---~~~~~~~----~~-~-----------------~--~--------~~~~~~~p~~a~v~~n~~Lt~~  251 (600)
T PRK10953        212 VA-A--PS--Q---SVATGAV----NE-I-----------------H--T--------SPYSKEAPLTASLSVNQKITGR  251 (600)
T ss_pred             cc-c--cc--c---ccccccc----cc-c-----------------c--c--------CCCCCCCCeEEEEEEEeecCCC
Confidence            10 0  00  0   0000000    00 0                 0  0        0011233455 99999999999


Q ss_pred             CCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCCccccccHHHH
Q 006868          244 GSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTF  323 (628)
Q Consensus       244 ~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~~~~~~tl~~~  323 (628)
                      ++.++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.|++..                .++|++++
T Consensus       252 ~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~----------------~~~tl~~~  315 (600)
T PRK10953        252 NSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG----------------KTLPLAEA  315 (600)
T ss_pred             CCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC----------------CCCCHHHH
Confidence            99999999999998789999999999999999999999999999999998887631                57899999


Q ss_pred             HHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHHHhcCCC
Q 006868          324 VELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPL  403 (628)
Q Consensus       324 l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~~~lp~~  403 (628)
                      |++|+||+.  |++.||+.++.++.++.    |+++..  +.+.+.+|..  +++++|+|++|| ++++.++++..+|++
T Consensus       316 l~~~~dl~~--~~~~~l~~~a~~~~~~~----l~~~~~--~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q~l~ll~~l  384 (600)
T PRK10953        316 LQWHFELTV--NTANIVENYATLTRSET----LLPLVG--DKAALQHYAA--TTPIVDMVRFAP-AQLDAEQLIGLLRPL  384 (600)
T ss_pred             HHHhcccCC--CcHHHHHHHHHhCCCHH----HHHHhc--CHHHHHHHhc--CCCHHHHHHhCC-CCCCHHHHHHhCCCC
Confidence            999999996  57899999999998754    333432  4556667754  799999999998 689999999999999


Q ss_pred             cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecC-CCCCC-CCCCCEEEEeC
Q 006868          404 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG-SLPRP-PPSVPLILIGP  480 (628)
Q Consensus       404 ~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g-~F~lp-~~~~piimIa~  480 (628)
                      +||+|||||+|..++++++|+|++|+|.. .++.+.|+||+||. .+++  |++|.+.+++| .|++| ++.+|+||||+
T Consensus       385 ~pR~YSIaSsp~~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~~~F~lp~~~~~piImIg~  461 (600)
T PRK10953        385 TPRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEE--EGEVRVFIEHNDNFRLPANPETPVIMIGP  461 (600)
T ss_pred             CCeeeecccCCCCCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCC--CCEEEEEeccCCcccCCCCCCCCEEEEec
Confidence            99999999999777899999999999986 47788999999997 5999  99999999875 89999 78899999999


Q ss_pred             CCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhh
Q 006868          481 GTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHK  559 (628)
Q Consensus       481 GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~  559 (628)
                      ||||||||||+|+|...+..   +++|||||||++. ||+|++||++|.+. |.++     ++++||||++.+|+||||+
T Consensus       462 GTGIAPfrsflq~r~~~~~~---~~~~LffG~R~~~~D~lY~~El~~~~~~-g~l~-----~l~~afSRd~~~k~YVQ~~  532 (600)
T PRK10953        462 GTGIAPFRAFMQQRAADGAP---GKNWLFFGNPHFTEDFLYQVEWQRYVKE-GLLT-----RIDLAWSRDQKEKIYVQDK  532 (600)
T ss_pred             CcCcHHHHHHHHHHHHcCCC---CCeEEEeeccCCccchhHHHHHHHHHHc-CCcc-----eEEEEECCCCCCCCcHHHH
Confidence            99999999999999876544   8999999999966 99999999999999 9897     8999999999889999999


Q ss_pred             HHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868          560 MLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       560 l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                      |.++.+++|+++.++++|||||+++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus       533 l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy  600 (600)
T PRK10953        533 LREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY  600 (600)
T ss_pred             HHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence            99999999999988999999999878999999999999999999999999999999999999999999

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=100.00  E-value=9.7e-103  Score=878.81  Aligned_cols=535  Identities=33%  Similarity=0.563  Sum_probs=472.4

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL   85 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~   85 (628)
                      +++|+|+|||+|||||.+|+.|++.+.+.|+.+.+.++++++..++.+++.+||++||||+|++|+|+..|+++|...+.
T Consensus        58 ~~~i~IlygSqTGnae~~A~~l~~~l~~~g~~~~v~~~~d~~~~~l~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~~  137 (597)
T TIGR01931        58 EKRVTILYGSQTGNARRLAKRLAEKLEAAGFSVRLSSADDYKFKQLKKERLLLLVISTQGEGEPPEEAISFHKFLHSKKA  137 (597)
T ss_pred             CCeEEEEEECCchHHHHHHHHHHHHHHhCCCccEEechHHCCHhhcccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999987654


Q ss_pred             cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCCCCC
Q 006868           86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFP  165 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~~  165 (628)
                      +.  |+|++|+||||||++|++||.+++.++++|+++||+++.|++.+|.+    +++.|++|.+++|+.|.+..+  ..
T Consensus       138 ~~--L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~~----~e~~~~~W~~~~~~~l~~~~~--~~  209 (597)
T TIGR01931       138 PK--LENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADLD----YDANAAEWRAGVLTALNEQAK--GS  209 (597)
T ss_pred             cc--cCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCccC----hHHHHHHHHHHHHHHHHhhcc--Cc
Confidence            43  89999999999999999999999999999999999999999998864    788999999999999976543  11


Q ss_pred             CCCCcccccccccCCCceEEEEecccccccccccccchhhhhhhhhhhhccccccccCcCCCcccee-eeeeeeecCCCC
Q 006868          166 QGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTKSG  244 (628)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~lt~~~  244 (628)
                      .            ..|.+.+..  ....                    .     .. ..+...++|. +|+.|++||+.+
T Consensus       210 ~------------~~~~~~~~~--~~~~--------------------~-----~~-~~~~~~~p~~a~v~~n~~lt~~~  249 (597)
T TIGR01931       210 A------------STPSLSETP--ARSQ--------------------T-----AT-SVYSKQNPFRAEVLENQKITGRN  249 (597)
T ss_pred             c------------CCCcceecc--cccc--------------------c-----cc-CCccCCCCeEEEEEeeEecCCCC
Confidence            0            011111100  0000                    0     00 0112233455 999999999999


Q ss_pred             CCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCCccccccHHHHH
Q 006868          245 SGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFV  324 (628)
Q Consensus       245 ~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~~~~~~tl~~~l  324 (628)
                      +.++|+||+|+++++++.|+|||+|+|+|+|+++.|+++|++||+++++.+++..                .++|++++|
T Consensus       250 ~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~~----------------~~~tl~~~l  313 (597)
T TIGR01931       250 SKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIGG----------------KTIPLFEAL  313 (597)
T ss_pred             CCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeCC----------------CCcCHHHHH
Confidence            9999999999999889999999999999999999999999999999999887631                678999999


Q ss_pred             HhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHHHhcCCCc
Q 006868          325 ELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLK  404 (628)
Q Consensus       325 ~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~~~lp~~~  404 (628)
                      ++|+||+.  |++.||+.+|++|+|+..++.|    +  +.+.+.+|+.  +++++|+|.+|| ++++.++++.++|+++
T Consensus       314 ~~~~dl~~--~~~~~l~~la~~~~~~~l~~~~----~--~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~ll~~~~  382 (597)
T TIGR01931       314 ITHFELTQ--NTKPLLKAYAELTGNKELKALI----A--DNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISLLRPLT  382 (597)
T ss_pred             HhceeCCC--CCHHHHHHHHHhcCCHHHHHHh----c--CHHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHhCcccC
Confidence            99999996  5799999999999998765543    2  5666888875  899999999999 8899999999999999


Q ss_pred             ccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecC-CCCCC-CCCCCEEEEeCC
Q 006868          405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG-SLPRP-PPSVPLILIGPG  481 (628)
Q Consensus       405 ~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g-~F~lp-~~~~piimIa~G  481 (628)
                      ||+|||||+|..++++++|+|++|+|.. .++.+.|.||+||++ +++  |++|.+.+++| .|++| ++.+|+||||+|
T Consensus       383 ~R~YSIaSsp~~~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~~~F~lp~~~~~piImIg~G  459 (597)
T TIGR01931       383 PRLYSISSSQSEVGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKE--GDTVPVYIEPNDNFRLPEDPDTPIIMIGPG  459 (597)
T ss_pred             CceeeeccCcccCCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCC--CCEEEEEEeeCCcccCCCCCCCCEEEEcCC
Confidence            9999999999767899999999999985 478889999999986 999  99999999764 79999 778999999999


Q ss_pred             CChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhH
Q 006868          482 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKM  560 (628)
Q Consensus       482 tGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l  560 (628)
                      |||||||||+|+|...+..   +++|||||||+.. |++|++||++|.+. +.++     +++++|||++..++||||+|
T Consensus       460 TGIAPfrsflq~r~~~~~~---g~~~LffG~R~~~~D~ly~~El~~~~~~-~~l~-----~l~~afSRd~~~k~yVqd~l  530 (597)
T TIGR01931       460 TGVAPFRAFMQERAEDGAK---GKNWLFFGNPHFTTDFLYQVEWQNYLKK-GVLT-----KMDLAFSRDQAEKIYVQHRI  530 (597)
T ss_pred             cCchhHHHHHHHHHHccCC---CCEEEEECCCCCCcchhHHHHHHHHHHc-CCCc-----eeEEEEecCCCCCccHHHHH
Confidence            9999999999999877654   8999999999955 99999999999998 8776     89999999887899999999


Q ss_pred             HHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868          561 LEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       561 ~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                      .++.+++++++.++++|||||++..|+++|.++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus       531 ~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy  597 (597)
T TIGR01931       531 REQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY  597 (597)
T ss_pred             HHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence            9999999999988999999995559999999999999999999999999999999999999999999

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-100  Score=842.56  Aligned_cols=537  Identities=39%  Similarity=0.669  Sum_probs=486.1

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL   85 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~   85 (628)
                      ...++|+|||+|||++.+|+.+++.+...|+++.+.++++++..++.....++|++||+|+|++|+|+..|+++|...+.
T Consensus        47 ~~~~~il~~sqtG~a~~~A~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~st~geGe~p~na~~f~~~l~~~~a  126 (587)
T COG0369          47 NKPITVLYGSQTGNAEGLAEELAKELEAAGLQVLVASLDDYKPKDIAEERLLLFVVSTQGEGEPPDNAVAFHEFLKGKKA  126 (587)
T ss_pred             CCceEEEEccCCccHHHHHHHHHHHHHhcCCceeecchhhcChhhHHhhhceEEEEccccCCCCCCchHHHHHHhccccc
Confidence            56799999999999999999999999999999999999999998888667899999999999999999999999987654


Q ss_pred             cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCCCCC
Q 006868           86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFP  165 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~~  165 (628)
                      +.  |.+.+|+|||+||++|..||.+++.++++|..+||+++.+++++|.+   +++.....|...+++.+...++  ..
T Consensus       127 ~~--L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~---~~e~~~~~w~~~~~~~l~~~~~--~~  199 (587)
T COG0369         127 PK--LDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ---DFEAAAAPWRDDVLELLKSKFP--GQ  199 (587)
T ss_pred             cc--ccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc---ccchhhhHHHHHHHHHHHhhcc--cc
Confidence            44  99999999999999999999999999999999999999999999996   3789999999999999988776  22


Q ss_pred             CCCCcccccccccCCCceEEEEecccccccccccccchhhhhhhhhhhhccccccccCcCCCcccee-eeeeeeecCCCC
Q 006868          166 QGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTKSG  244 (628)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~lt~~~  244 (628)
                      ...          ....+..    ..                   .    .      ..+.++.++. .+..|++|+..+
T Consensus       200 ~~~----------~~~~~~~----~~-------------------~----~------~~~~~~~~~~a~~~~n~~l~~~~  236 (587)
T COG0369         200 EAA----------PAQVATS----PQ-------------------S----E------SPYSKPAPSVAILLENRKLTGRD  236 (587)
T ss_pred             ccc----------cccccch----hc-------------------c----c------ccccccCcceeEeeccccCCccc
Confidence            110          0000000    00                   0    0      1112334455 999999999999


Q ss_pred             CCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCCccccccHHHHH
Q 006868          245 SGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFV  324 (628)
Q Consensus       245 ~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~~~~~~tl~~~l  324 (628)
                      +.++++||+|++++++++|+|||+++|||+|+++.|+++|+.|||++++.|++.                +.++++.++|
T Consensus       237 ~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~----------------~~~~~~~~~l  300 (587)
T COG0369         237 SDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD----------------GETLPLVEAL  300 (587)
T ss_pred             cCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC----------------CCcchHHHHH
Confidence            999999999999977999999999999999999999999999999999777431                2789999999


Q ss_pred             HhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHHHhcCCCc
Q 006868          325 ELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLK  404 (628)
Q Consensus       325 ~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~~~lp~~~  404 (628)
                      ++|+|++. .| |.|+..++.|+.++..++.|+.++    ..++..|..  +++++|+|++||++++|.++++..+|+++
T Consensus       301 ~~~~e~~~-~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~li~~l~~lk  372 (587)
T COG0369         301 KSHFEFTS-AP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEELIDLLPPLK  372 (587)
T ss_pred             HHheeccc-ch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHHHHHhCccCC
Confidence            99999999 88 999999999999999999999887    566777765  99999999999999999999999999999


Q ss_pred             ccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecC-CCCCC-CCCCCEEEEeCCC
Q 006868          405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPRP-PPSVPLILIGPGT  482 (628)
Q Consensus       405 ~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-~F~lp-~~~~piimIa~Gt  482 (628)
                      ||+|||||+|..++++++|||++|+|.+. ++.+.|+||+||+++.+ .|+.|.++++.+ +|++| ++.+||||||+||
T Consensus       373 PR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~-~g~~i~v~v~~n~nf~lp~~~~~PiIMIG~GT  450 (587)
T COG0369         373 PRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLE-EGDTIPVFVQPNKNFRLPEDPETPIIMIGPGT  450 (587)
T ss_pred             CeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhc-CCCeEEEEeccCCccccCCCCCCceEEEcCCC
Confidence            99999999998899999999999999998 55899999999987643 299999999988 89999 7779999999999


Q ss_pred             ChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhHH
Q 006868          483 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKML  561 (628)
Q Consensus       483 GIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~  561 (628)
                      ||||||||+|+|..++.+   +++|||||||+.+ ||||++||++|.+. |.++     ++..|||||+.+|.||||+|+
T Consensus       451 GIAPFRafvq~r~~~~~~---gk~wLfFG~R~~~~DfLY~~Ewe~~~~~-G~~~-----~l~~AfSRdq~~KiYVQd~lr  521 (587)
T COG0369         451 GIAPFRAFVQERAANGAE---GKNWLFFGCRHFTEDFLYQEEWEEYLKD-GVLT-----RLDLAFSRDQEEKIYVQDRLR  521 (587)
T ss_pred             CchhHHHHHHHHHhcccc---CceEEEecCCCCccchhhHHHHHHHHhc-CCce-----eEEEEEeecCCCCccHHHHHH
Confidence            999999999999998876   7999999999988 99999999999999 9887     999999999999999999999


Q ss_pred             HcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868          562 EQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       562 ~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                      +++++||+++.++|+|||||+++.|+++|.++|.+|+.++++++.|+|.+++++|++++||++|||
T Consensus       522 e~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy  587 (587)
T COG0369         522 EQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY  587 (587)
T ss_pred             HhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence            999999999999999999998889999999999999999999999999999999999999999999

>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]

Probab=100.00  E-value=7e-100  Score=834.10  Aligned_cols=587  Identities=36%  Similarity=0.615  Sum_probs=488.1

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC-CCCCeEEEEEecCCCCCCChhHHHHHHHHHhc
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK   83 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l-~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~   83 (628)
                      ...+++|+|+|+||++|.+|.++++.+  .-++...+.+.+++...+ ...++++++.+|||+|++|+|+..|.+++...
T Consensus        45 ~~~~~~v~~~s~tgtae~~a~~l~~~~--~~~~~~~~~~~d~~~~~l~~~~~l~~~~~at~g~gd~~dn~~~f~~~l~~~  122 (645)
T KOG1158|consen   45 KRVKATVLYGSQTGTAEDFAKRLSEIF--ARFELKVLKVADYDLYALEDHEKLLVVVLATYGEGDPPDNAEAFYQSLTEL  122 (645)
T ss_pred             cceeEEEEeccCCCCHHHHHHHHHHHh--hhccccceeecchhhcccccccceeeeeeehhcCCCCCccHHHHHHHHhhc
Confidence            457889999999999999999999999  445666666666665556 56679999999999999999999999999877


Q ss_pred             cCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCCC
Q 006868           84 SLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSF  163 (628)
Q Consensus        84 ~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~~  163 (628)
                      +.+.  ...++|+|||+|++.|++||++++.++++|+++|++++...+.+|+..  +.+++|..|++.+|+.+.+.+.  
T Consensus       123 ~~~~--~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~--~~e~~f~~w~~~~~~~~~~~f~--  196 (645)
T KOG1158|consen  123 KVLP--SSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDA--GLEEDFRTWKKPLLPELCETFS--  196 (645)
T ss_pred             cCch--hhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccc--cchhHHHHHHHHHhHhhhheee--
Confidence            6544  455899999999999999999999999999999999999999999985  5999999999999999988876  


Q ss_pred             CCCCCCcccccccccCCCceEEEEecccccccccccccchhhhhhhhhhhhccccccccCcCCCcccee-eeeeeeecCC
Q 006868          164 FPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTK  242 (628)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~lt~  242 (628)
                      +.+..  ..+....+..  ...........    .  ..        .......+..+........+|. .++.+..|..
T Consensus       197 ~~~~~--~~~~~~~~~~--~~~~~~~~~~~----~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  258 (645)
T KOG1158|consen  197 LEEDE--ATKEDETIRQ--YRTWTPNDPPF----V--PQ--------AFPPELLNLLSSTPFDKVFPFPALVVVNLALST  258 (645)
T ss_pred             ecccc--ccCCcccccc--cccCcCccccc----c--cc--------ccCccccccccCCcchhcccchhhhhHHhhccC
Confidence            22100  0000000000  00000000000    0  00        0000000000000001112333 5666777776


Q ss_pred             CCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEE--eecCccCCCCcccCCCccccccH
Q 006868          243 SGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITV--QHKEMKNYLPDIHKNTTEVPIKL  320 (628)
Q Consensus       243 ~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~--~~~~~~~~~p~~~~~~~~~~~tl  320 (628)
                      +.+.+.++|++++..++++.|+||||++|+|.|+.+.|++++++|+++++..+.+  .....+...|.....+++.|+|+
T Consensus       259 ~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~  338 (645)
T KOG1158|consen  259 PSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTTL  338 (645)
T ss_pred             CCCceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCcH
Confidence            7788999999999997899999999999999999999999999999998744433  33321111222234557799999


Q ss_pred             HHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHHHhc
Q 006868          321 RTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLV  400 (628)
Q Consensus       321 ~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~~~l  400 (628)
                      +++|++|+||++ +|++.+++.||.||+|+.||++|+.|++++|..+|.+++....++++|||++||+|++|+++|+..+
T Consensus       339 ~~~l~~~ldi~~-~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~l  417 (645)
T KOG1158|consen  339 RTALTHYLDITG-PPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLELL  417 (645)
T ss_pred             HHHHHHhccccC-CCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHhC
Confidence            999999999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccceeeccCCCCCCCeEEEEEEEEEeecCCC-CcccccccHHhhCcCCCCCceEE--EEeecCCCCCC-CCCCCEE
Q 006868          401 PPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIP--AWFQKGSLPRP-PPSVPLI  476 (628)
Q Consensus       401 p~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~--i~~~~g~F~lp-~~~~pii  476 (628)
                      |.++||+|||||||..++++++++|.+|+|.++.+ +.|.|+||+||+++++  |+.+.  +......|++| ++.+|+|
T Consensus       418 p~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~--~~~~~~~~~~~~s~frlp~dp~~PiI  495 (645)
T KOG1158|consen  418 PRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKP--GEKVPNPVPVGKSMFRLPSDPSTPII  495 (645)
T ss_pred             ccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCC--ccccCcceeecccceecCCCCCCcEE
Confidence            99999999999999999999999999999999875 6778999999999999  99998  55567789999 8999999


Q ss_pred             EEeCCCChHHHHHHHHHHHHhcCCC---CCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCC-C
Q 006868          477 LIGPGTGCAPFRGFVEERAIQSSSG---PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ-P  551 (628)
Q Consensus       477 mIa~GtGIAPfrs~l~~~~~~~~~~---~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~-~  551 (628)
                      |||+||||||||||+|+|......+   ..+ +|||||||+.+ |+||++||+++.+. |.++     ++.+||||++ .
T Consensus       496 MIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~-~~l~-----~l~~A~SReq~~  568 (645)
T KOG1158|consen  496 MIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKA-GILT-----RLDVAFSREQTP  568 (645)
T ss_pred             EEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhc-Ccch-----hheeeeeccCCC
Confidence            9999999999999999999876543   234 99999999999 99999999999887 8887     9999999998 7


Q ss_pred             CccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868          552 QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       552 ~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                      +|.||||+|++.+++||++|.+ +++|||||++++|+++|.++|.+|+++.++++.++|++++++|++++||++|||
T Consensus       569 ~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw  645 (645)
T KOG1158|consen  569 KKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW  645 (645)
T ss_pred             CceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence            8999999999999999999966 999999999966999999999999999999999999999999999999999999

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=100.00  E-value=1e-77  Score=651.06  Aligned_cols=383  Identities=37%  Similarity=0.691  Sum_probs=349.8

Q ss_pred             cee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCC-CCceEEEeecCccCCCC
Q 006868          230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLD-PDALITVQHKEMKNYLP  307 (628)
Q Consensus       230 ~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~-~~~~v~~~~~~~~~~~p  307 (628)
                      +|. +|++|++||++ ++++++||+||+++++++|+|||+|+|+|+|+++.|+++|++||++ +++.+++++....... 
T Consensus         5 ~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~~~~-   82 (416)
T cd06204           5 PFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEPASK-   82 (416)
T ss_pred             CeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCccccc-
Confidence            445 89999999998 9999999999998778999999999999999999999999999999 8999988754421111 


Q ss_pred             cccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCC
Q 006868          308 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP  387 (628)
Q Consensus       308 ~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~  387 (628)
                         ..+++.|+|++++|++||||++ +|++.||+.||.||+|+.+|++|++|++ +|.++|.+|+.+.++|++|+|++||
T Consensus        83 ---~~~~~~~~tl~~~l~~~~Dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~~f~  157 (416)
T cd06204          83 ---KVPFPCPTTYRTALRHYLDITA-PVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQDFP  157 (416)
T ss_pred             ---CCCCCCCccHHHHHHhhEEeCC-CCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHHhCc
Confidence               1236689999999999999999 9999999999999999999999999999 9999999999999999999999999


Q ss_pred             CCC---CCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcC--------------
Q 006868          388 SVQ---MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD--------------  450 (628)
Q Consensus       388 ~~~---~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~--------------  450 (628)
                      +++   +|+++|++.+|+++||+|||||+|..+++.++|||++++|.++.++.+.|+||+||+++.              
T Consensus       158 s~~~~~~pl~~ll~~lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~  237 (416)
T cd06204         158 SAKPTPPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYL  237 (416)
T ss_pred             ccCCCCCCHHHHHHhCccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccccccc
Confidence            999   999999999999999999999999778899999999999999888889999999999776              


Q ss_pred             -------CCCCceEEEEeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEcCCCC-Ccccc
Q 006868          451 -------PQQGIYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLY  520 (628)
Q Consensus       451 -------~~~G~~v~i~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly  520 (628)
                             +  |+.|.+.++.|.|.+| +..+|+||||+||||||||||++++......+ ..++++||||||++ .|++|
T Consensus       238 ~~~~~~~~--g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly  315 (416)
T cd06204         238 SGPRKKGG--GSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIY  315 (416)
T ss_pred             ccccccCC--CCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccch
Confidence                   7  9999999999999999 77799999999999999999999986542211 24799999999999 49999


Q ss_pred             HHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 006868          521 RELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSK  600 (628)
Q Consensus       521 ~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~  600 (628)
                      ++||++|.+..+.+      +++++|||++..++||||+|.++.+.+++++.+++.||||||+..|+++|+++|.+|+++
T Consensus       316 ~~el~~~~~~~~~~------~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~  389 (416)
T cd06204         316 KDELEEYAKLGGLL------ELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAE  389 (416)
T ss_pred             HHHHHHHHHcCCce------EEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHH
Confidence            99999999873445      899999998878999999999999999998888899999999844999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868          601 EGEASRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       601 ~~~~~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                      ++++++++|++|+++|+++|||++|||
T Consensus       390 ~~~~~~~~A~~~l~~l~~~gRy~~dvw  416 (416)
T cd06204         390 QGGMTETEAEEYVKKLKTRGRYQEDVW  416 (416)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCeeEecC
Confidence            999999999999999999999999999

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

Probab=100.00  E-value=2.9e-77  Score=644.39  Aligned_cols=375  Identities=32%  Similarity=0.603  Sum_probs=340.6

Q ss_pred             eeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCC--CCceEEEeec--Ccc--CCCC
Q 006868          234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLD--PDALITVQHK--EMK--NYLP  307 (628)
Q Consensus       234 v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~--~~~~v~~~~~--~~~--~~~p  307 (628)
                      |++|++||+++++++++||+|++.++++.|+|||+|+|+|+|+++.|+++|++||++  ++..++++..  ...  ..+|
T Consensus         2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (398)
T cd06203           2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKKKNAKVP   81 (398)
T ss_pred             cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccC
Confidence            678999999999999999999998778999999999999999999999999999999  7788888632  111  1233


Q ss_pred             cccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCC
Q 006868          308 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP  387 (628)
Q Consensus       308 ~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~  387 (628)
                          .+++.++|++++|++||||++ +|+++||+.||+||+|+.+|++|.+|++.++.++|.+|+.+.++|++|+|++||
T Consensus        82 ----~~~p~~~tl~~ll~~~~Dl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~  156 (398)
T cd06203          82 ----VHIPKVVTLRTILTWCLDIRA-IPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFP  156 (398)
T ss_pred             ----CCCCCCccHHHHHHHhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCC
Confidence                235678999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcC-----CCCCceEEEEee
Q 006868          388 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD-----PQQGIYIPAWFQ  462 (628)
Q Consensus       388 ~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~-----~~~G~~v~i~~~  462 (628)
                      ++++|++++++.+|+++||+|||||+|..+++.++|+|+++.+.+      .|+||+||+++.     +  |++|.+.++
T Consensus       157 s~~~pl~~ll~~lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~--G~~v~i~~~  228 (398)
T cd06203         157 SCRPPLSLLIEHLPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSH--GVKVPFYLR  228 (398)
T ss_pred             CCCCCHHHHHHhCccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCC--CCEEEEEEe
Confidence            999999999999999999999999999666799999999987654      699999999887     8  999999995


Q ss_pred             -cCCCCCC-C-CCCCEEEEeCCCChHHHHHHHHHHHHhcC---CCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcc
Q 006868          463 -KGSLPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSS---SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFS  535 (628)
Q Consensus       463 -~g~F~lp-~-~~~piimIa~GtGIAPfrs~l~~~~~~~~---~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~  535 (628)
                       .|.|.+| + ..+|+||||+||||||||||+|++.....   .+..++++||||||+++ |++|++||++|.+. |.+.
T Consensus       229 ~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~-~~~~  307 (398)
T cd06203         229 SSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEE-GILT  307 (398)
T ss_pred             cCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHc-CCCc
Confidence             5789998 5 67999999999999999999999876321   11348999999999995 99999999999998 7775


Q ss_pred             cCCCCcEEEEEecCCC---CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHH
Q 006868          536 EAKGGGFYVAFSRKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAAN  611 (628)
Q Consensus       536 ~~~~~~~~~a~Sr~~~---~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~  611 (628)
                           ++++||||++.   .++||||+|.++.+.+++++. +++.|||||++..|+++|+++|.+|+++++++++++|++
T Consensus       308 -----~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~  382 (398)
T cd06203         308 -----RLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKK  382 (398)
T ss_pred             -----eEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence                 79999999887   589999999999999999885 589999999976899999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEeec
Q 006868          612 WLKALQRAGRYHVEAW  627 (628)
Q Consensus       612 ~l~~l~~~~Ry~~dvw  627 (628)
                      |+++|+++|||++|+|
T Consensus       383 ~~~~l~~~gRy~~dvw  398 (398)
T cd06203         383 LLARLRKEDRYLEDVW  398 (398)
T ss_pred             HHHHHHHcCCeeeecC
Confidence            9999999999999999

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=100.00  E-value=7.3e-77  Score=639.32  Aligned_cols=377  Identities=43%  Similarity=0.731  Sum_probs=345.9

Q ss_pred             eeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCC
Q 006868          234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNT  313 (628)
Q Consensus       234 v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~  313 (628)
                      |++|++||+++++++|+||+|+++++++.|+|||+|+|+|+|+++.|+++|++||+++++.+++++......     ..+
T Consensus         2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~-----~~~   76 (382)
T cd06207           2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQQRG-----KPP   76 (382)
T ss_pred             cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccccccc-----CCC
Confidence            678999999999999999999998778999999999999999999999999999999999998875431111     123


Q ss_pred             ccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCH
Q 006868          314 TEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPI  393 (628)
Q Consensus       314 ~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~  393 (628)
                      ++.|+|++++|++||||++ +|++.||+.||.||+|+.+|++|.+|++.++.+.|.+|   ++++++|+|++||++++|+
T Consensus        77 ~~~~~t~~~ll~~~~dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~~  152 (382)
T cd06207          77 FPEPISVRQLLKKFLDIFG-KPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPTL  152 (382)
T ss_pred             CCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCCH
Confidence            6789999999999999999 99999999999999999999999999999999999888   7999999999999999999


Q ss_pred             HHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCC-CCC
Q 006868          394 DWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PPS  472 (628)
Q Consensus       394 ~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp-~~~  472 (628)
                      +.|++.+|+++||+|||||+|..+++.++|+|+++.|.++.++.+.|+||+||+++++  |+.|.+.+|.|.|.+| +..
T Consensus       153 ~~ll~~lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~p~g~F~lp~~~~  230 (382)
T cd06207         153 EQLLELCPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKV--GQRVTVFIKKSSFKLPKDPK  230 (382)
T ss_pred             HHHHHhCcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCC--CCEEEEEEECCcccCCCCCC
Confidence            9999999999999999999996668999999999999998888889999999999999  9999999999999999 778


Q ss_pred             CCEEEEeCCCChHHHHHHHHHHHHhcCC-CCCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCcccCCCCcEEEEEecCC
Q 006868          473 VPLILIGPGTGCAPFRGFVEERAIQSSS-GPAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ  550 (628)
Q Consensus       473 ~piimIa~GtGIAPfrs~l~~~~~~~~~-~~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~  550 (628)
                      +|+||||+||||||||||++++...... ...++++||||||++ .|++|++||++|.+. +.+.     ++++||||++
T Consensus       231 ~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~-~~~~-----~~~~a~Srd~  304 (382)
T cd06207         231 KPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKS-GVLT-----TLGTAFSRDQ  304 (382)
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhC-CCCc-----eEEEEecCCC
Confidence            9999999999999999999998754211 124899999999999 599999999999988 6654     8999999998


Q ss_pred             CCccchhhhHHHcHHHHHHHHhCC-CEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868          551 PQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       551 ~~k~yVqd~l~~~~~~v~~~l~~~-~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                      ..++||||++.++.+.+++++.++ +.||||||+..|+++|+++|.+++.+++++++++|++|+++|+++|||++|||
T Consensus       305 ~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw  382 (382)
T cd06207         305 PKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW  382 (382)
T ss_pred             CCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence            889999999999999999988775 49999999833999999999999999999999999999999999999999999

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

Probab=100.00  E-value=1.5e-76  Score=639.96  Aligned_cols=384  Identities=33%  Similarity=0.587  Sum_probs=340.7

Q ss_pred             eeeeeeecCCCCCCCcEEEEEEEecC-CCCccCCCCEEEEecCCCHHHHHHHHHHcCCCC--CceEEEeecCccC---CC
Q 006868          233 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDP--DALITVQHKEMKN---YL  306 (628)
Q Consensus       233 ~v~~~~~lt~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~--~~~v~~~~~~~~~---~~  306 (628)
                      +|++|++||++++.|+++||+||+++ +++.|+|||+|+|+|+|+++.|+++|++|++.+  +..+.++......   +.
T Consensus         1 ~~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T cd06202           1 KVISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGI   80 (406)
T ss_pred             CcceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCccccc
Confidence            47789999999999999999999985 689999999999999999999999999999854  5677775322211   00


Q ss_pred             Cc-ccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhh
Q 006868          307 PD-IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLED  385 (628)
Q Consensus       307 p~-~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~  385 (628)
                      .. ...+.++.|+|++++|++||||++ +|++.||+.||.||+|+.+|++|++|++  +.++|.+|+.+++++++|+|++
T Consensus        81 ~~~~~~~~~~~~~tl~~ll~~~lDl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~  157 (406)
T cd06202          81 IKTWTPHERLPPCTLRQALTRYLDITT-PPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEE  157 (406)
T ss_pred             cccccccCCCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHh
Confidence            00 001234569999999999999999 9999999999999999999999999997  7889999999999999999999


Q ss_pred             CCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCC--CCcccccccHHhhCcCCCCCceEEEEeec
Q 006868          386 FPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY--KRKRTGLCSVWLAGLDPQQGIYIPAWFQK  463 (628)
Q Consensus       386 f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~--~~~~~G~~S~~L~~l~~~~G~~v~i~~~~  463 (628)
                      ||++++|+++|++.+|+++||+|||||+|..+++.++|+|+++.|.++.  ++.+.|+||+||+++++  |+.|.+.++.
T Consensus       158 f~s~~~~~~~ll~~lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~~~  235 (406)
T cd06202         158 FPSLQVPASLLLTQLPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTP--GDTVPCFVRS  235 (406)
T ss_pred             CCcCCCCHHHHHHhCcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCC--CCEEEEEEee
Confidence            9999999999999999999999999999976789999999999998754  33578999999999999  9999999875


Q ss_pred             -CCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhc-----CCCCCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCcc
Q 006868          464 -GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQS-----SSGPAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFS  535 (628)
Q Consensus       464 -g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~-----~~~~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~  535 (628)
                       |.|.+| +..+|+||||+||||||||||||+|....     .....++++||||||++ +|++|++||++|.+. |.+.
T Consensus       236 ~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~-~~~~  314 (406)
T cd06202         236 APSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNK-GVLT  314 (406)
T ss_pred             CCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHc-CCCc
Confidence             489999 77899999999999999999999986431     11134899999999999 599999999999998 7775


Q ss_pred             cCCCCcEEEEEecCCC-CccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006868          536 EAKGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL  613 (628)
Q Consensus       536 ~~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l  613 (628)
                           ++++||||++. .++||||.|.++.+.+++++ .+++.|||||++ .|+++|.++|.+|++++++++.++|++|+
T Consensus       315 -----~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~-~M~~~V~~~L~~i~~~~~~~s~~~A~~~~  388 (406)
T cd06202         315 -----EVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGDV-TMAEDVSQTIQRILAEHGNMSAEEAEEFI  388 (406)
T ss_pred             -----eEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCC-chHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence                 79999999875 58999999999999999998 459999999998 89999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeecC
Q 006868          614 KALQRAGRYHVEAWS  628 (628)
Q Consensus       614 ~~l~~~~Ry~~dvws  628 (628)
                      ++|+++|||++|||+
T Consensus       389 ~~l~~~gRy~~dvw~  403 (406)
T cd06202         389 LKLRDENRYHEDIFG  403 (406)
T ss_pred             HHHHHcCCeEEEecc
Confidence            999999999999996

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

Probab=100.00  E-value=1.7e-74  Score=621.34  Aligned_cols=373  Identities=31%  Similarity=0.562  Sum_probs=338.7

Q ss_pred             eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCC
Q 006868          233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN  312 (628)
Q Consensus       233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~  312 (628)
                      +|++|++||+++++++|+||+|+++ +++.|+|||+|+|+|+|+++.|+++|++||+++++.|++.+......+|     
T Consensus         1 ~v~~~~~lt~~~~~~~~~~~~~~~~-~~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~~~~~p-----   74 (384)
T cd06206           1 TVVENRELTAPGVGPSKRHLELRLP-DGMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGSATGLP-----   74 (384)
T ss_pred             CeeeEEEcCCCCCCccEEEEEEECC-CCCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCCCCCCC-----
Confidence            5789999999999999999999997 5899999999999999999999999999999999999887643322333     


Q ss_pred             CccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCC
Q 006868          313 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP  392 (628)
Q Consensus       313 ~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p  392 (628)
                       ++.|+|++++|++|+||++ +|++.||+.||+||+|+.+|++|..++    .++|.+++.++++|++|+|++||++++|
T Consensus        75 -~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~~  148 (384)
T cd06206          75 -LGTPISVSELLSSYVELSQ-PATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALP  148 (384)
T ss_pred             -CCCCEEHHHHHHhhccccC-CCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCCC
Confidence             6689999999999999999 999999999999999999999999886    3578888888999999999999999999


Q ss_pred             HHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCC-CcccccccHHhhCcCCCCCceEEEE--eecCCCCCC
Q 006868          393 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIPAW--FQKGSLPRP  469 (628)
Q Consensus       393 ~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~i~--~~~g~F~lp  469 (628)
                      ++++++.+|+++||+|||||+|..+++.++|+|+++++.+..+ +.+.|+||+||+++++  |+.|.+.  ++.|.|.+|
T Consensus       149 ~~~~l~~~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~i~~p~g~F~l~  226 (384)
T cd06206         149 LATFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRP--GDSIHVSVRPSHSAFRPP  226 (384)
T ss_pred             HHHHHHhCcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCC--CCeEEEEEecCCCccCCC
Confidence            9999999999999999999999666889999999999887654 5578999999999999  9999976  456899998


Q ss_pred             -CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868          470 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  546 (628)
Q Consensus       470 -~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~  546 (628)
                       +..+|+||||+|||||||+||++++......+ ..++++||||||++ .|++|++||++|.+. +.+      ++++++
T Consensus       227 ~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~~------~l~~a~  299 (384)
T cd06206         227 SDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAA-GVV------SVRRAY  299 (384)
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHC-CCe------EEEEEe
Confidence             67899999999999999999999987642111 23789999999999 599999999999987 888      899999


Q ss_pred             ecCCCC-ccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCC
Q 006868          547 SRKQPQ-KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG----EASRDSAANWLKALQRAGR  621 (628)
Q Consensus       547 Sr~~~~-k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~----~~~~~~a~~~l~~l~~~~R  621 (628)
                      ||++.. ++|||+.|.++.+.+++++.+++.||||||+ .|+++|.++|.+++.+++    +++.++|++|+++|+++||
T Consensus       300 Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gr  378 (384)
T cd06206         300 SRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGDG-RMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGR  378 (384)
T ss_pred             cccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECCC-chHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCC
Confidence            998764 8999999999999999988889999999999 799999999999999999    9999999999999999999


Q ss_pred             EEEeec
Q 006868          622 YHVEAW  627 (628)
Q Consensus       622 y~~dvw  627 (628)
                      |++|||
T Consensus       379 y~~dvw  384 (384)
T cd06206         379 YATDVF  384 (384)
T ss_pred             eeeecC
Confidence            999999

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la

>cd06199 SiR Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=3.4e-71  Score=590.04  Aligned_cols=354  Identities=33%  Similarity=0.588  Sum_probs=320.8

Q ss_pred             eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCC
Q 006868          233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN  312 (628)
Q Consensus       233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~  312 (628)
                      +|++|++||+++++++++||+|+++++++.|+|||+|+|+|+|+++.|+++|++||+++++.+++         +     
T Consensus         1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~---------~-----   66 (360)
T cd06199           1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST---------V-----   66 (360)
T ss_pred             CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------C-----
Confidence            47799999999999999999999997789999999999999999999999999999999987642         1     


Q ss_pred             CccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCC--CCC
Q 006868          313 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP--SVQ  390 (628)
Q Consensus       313 ~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~--~~~  390 (628)
                       ++.++|++++|++|+||++ +    .++.|+.||+++.++++|..    ++.++|.+     .++++|+|++||  +++
T Consensus        67 -~~~~~t~~~~l~~~~dl~~-~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~  131 (360)
T cd06199          67 -GGGTLPLREALIKHYEITT-L----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR  131 (360)
T ss_pred             -CCCcccHHHHHHhhhhhcc-C----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence             2378999999999999998 4    45568899999989888875    57777653     589999999999  999


Q ss_pred             CCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCc-CCCCCceEEEEeecC-CCCC
Q 006868          391 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL-DPQQGIYIPAWFQKG-SLPR  468 (628)
Q Consensus       391 ~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l-~~~~G~~v~i~~~~g-~F~l  468 (628)
                      +|+++++..+|+++||+|||||+|..+++.++|+|++++|.+. ++.+.|+||+||+++ ++  |+.|.+++++| .|.+
T Consensus       132 ~~~gq~l~l~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~--Gd~v~v~~~~~~~F~l  208 (360)
T cd06199         132 LTAEELLDLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKE--GDTVPVFVQPNPHFRL  208 (360)
T ss_pred             CCHHHHHHhCcCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCC--CCEEEEEEecCCCcCC
Confidence            9999999999999999999999996668899999999999875 566889999999975 68  99999998765 7999


Q ss_pred             C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868          469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF  546 (628)
Q Consensus       469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~  546 (628)
                      | +..+|+||||+||||||||||+|++......   ++++||||||+++ |++|++||++|.+. +.+.     ++++||
T Consensus       209 p~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~---~~~~L~~G~R~~~~D~~y~~el~~~~~~-~~~~-----~~~~a~  279 (360)
T cd06199         209 PEDPDAPIIMVGPGTGIAPFRAFLQEREATGAK---GKNWLFFGERHFATDFLYQDELQQWLKD-GVLT-----RLDTAF  279 (360)
T ss_pred             CCCCCCCEEEEecCcChHHHHHHHHHHHhccCC---CcEEEEEcCCCCccchhHHHHHHHHHHc-CCCe-----EEEEEE
Confidence            9 7789999999999999999999999875543   8999999999985 99999999999988 5543     899999


Q ss_pred             ecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEee
Q 006868          547 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEA  626 (628)
Q Consensus       547 Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dv  626 (628)
                      ||++..++||||.|.++.+.+++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++||
T Consensus       280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv  359 (360)
T cd06199         280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV  359 (360)
T ss_pred             ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence            99988889999999999999999888899999999987899999999999999999999999999999999999999999


Q ss_pred             c
Q 006868          627 W  627 (628)
Q Consensus       627 w  627 (628)
                      |
T Consensus       360 w  360 (360)
T cd06199         360 Y  360 (360)
T ss_pred             C
Confidence            9

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.

>PRK06214 sulfite reductase; Provisional

Probab=100.00  E-value=1.1e-70  Score=603.13  Aligned_cols=360  Identities=33%  Similarity=0.582  Sum_probs=322.5

Q ss_pred             cccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCC
Q 006868          228 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYL  306 (628)
Q Consensus       228 ~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~  306 (628)
                      .++|. +|++|++||+++++++++||+||+++++++|+|||+|+|+|+|+++.|+++|++||++++..+           
T Consensus       166 ~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~-----------  234 (530)
T PRK06214        166 DNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI-----------  234 (530)
T ss_pred             CCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc-----------
Confidence            44566 999999999999999999999999977899999999999999999999999999999987432           


Q ss_pred             CcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhC
Q 006868          307 PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDF  386 (628)
Q Consensus       307 p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f  386 (628)
                               .++|++++|++|+||++ +| +.||+.|+.+++++. |++|+.|++.+..+..     ....+++|+|++|
T Consensus       235 ---------~~~tlr~~L~~~~Dl~~-~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~vldvL~~f  297 (530)
T PRK06214        235 ---------GGKTLREALLEDVSLGP-AP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDVLAALEKF  297 (530)
T ss_pred             ---------CCccHHHHHHHheeccC-CC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcHHHHHHhC
Confidence                     46799999999999998 65 889999999998776 7787778763332221     1246899999999


Q ss_pred             CCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecC-
Q 006868          387 PSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG-  464 (628)
Q Consensus       387 ~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g-  464 (628)
                      |++++|++++++.+|+++||+|||||+|..++++++|+|++|+|.+ .++.+.|+||+||+ ++++  |+.|.++++.+ 
T Consensus       298 p~~~~~~~~lle~lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~--Gd~V~v~i~~~~  374 (530)
T PRK06214        298 PGIRPDPEAFVEALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAP--GTRVRVYVQKAH  374 (530)
T ss_pred             CCCCCCHHHHHhhcCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCC--CCEEEEEecCCC
Confidence            9999999999999999999999999999667899999999999985 46778999999997 7999  99999988543 


Q ss_pred             CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcE
Q 006868          465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGF  542 (628)
Q Consensus       465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~  542 (628)
                      .|.+| +..+|+||||+||||||||||+|+|......   +++|||||||+.+ |++|++||++|.+. +.++     ++
T Consensus       375 gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~~---g~~~LffG~R~~~~D~ly~dEL~~l~~~-g~l~-----~l  445 (530)
T PRK06214        375 GFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKAP---GRNWLFFGHQRSATDFFYEDELNGLKAA-GVLT-----RL  445 (530)
T ss_pred             CCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcCC---CCeEEEEEecCChhhhHHHHHHHHHHHh-CCce-----EE
Confidence            49999 7778999999999999999999998765543   8999999998866 99999999999998 7775     79


Q ss_pred             EEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCE
Q 006868          543 YVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY  622 (628)
Q Consensus       543 ~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry  622 (628)
                      +++|||++..++||||+|.++.+++++++.++++||||||++.|+++|+++|.+|+++++++++++|++|+++|+++|||
T Consensus       446 ~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~gRY  525 (530)
T PRK06214        446 SLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRY  525 (530)
T ss_pred             EEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCE
Confidence            99999998889999999999999999999889999999997679999999999999999999999999999999999999


Q ss_pred             EEeec
Q 006868          623 HVEAW  627 (628)
Q Consensus       623 ~~dvw  627 (628)
                      ++|||
T Consensus       526 ~~Dvw  530 (530)
T PRK06214        526 QADVY  530 (530)
T ss_pred             EEecC
Confidence            99999

>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase

Probab=100.00  E-value=4.5e-46  Score=370.42  Aligned_cols=212  Identities=45%  Similarity=0.759  Sum_probs=179.5

Q ss_pred             ccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCC
Q 006868          229 VCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLP  307 (628)
Q Consensus       229 ~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p  307 (628)
                      ++|. +|++|++||+++++++++||+|++++++++|+|||+|+|+|+|+++.|++++++||+++++.|+++.......  
T Consensus         7 ~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~~~~--   84 (219)
T PF00667_consen    7 NPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQNNS--   84 (219)
T ss_dssp             B-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESSTTSS--
T ss_pred             CCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEecccccc--
Confidence            3455 9999999999999999999999999889999999999999999999999999999999999999987664211  


Q ss_pred             cccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCC
Q 006868          308 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP  387 (628)
Q Consensus       308 ~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~  387 (628)
                        ...+++.++||+++|++|+||++ +|++.||+.||.||+|+.+|++|++|++.+|.++|.+|+.+.+++++|+|++||
T Consensus        85 --~~~~~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~dil~~fp  161 (219)
T PF00667_consen   85 --VKPPFPSPITLRDLLTHYLDITS-PPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDILEDFP  161 (219)
T ss_dssp             --CCSSSSSSEEHHHHHHHTB-TSS-B--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHHHHHST
T ss_pred             --cccccccceeeeeeeeeeeeccc-ccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHHHhhCc
Confidence              12337799999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHH
Q 006868          388 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW  445 (628)
Q Consensus       388 ~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~  445 (628)
                      ++++|+++|++.+|+++||+|||||||..++++++|||++|+|.+..++.+.|+||+|
T Consensus       162 s~~~pl~~ll~~lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y  219 (219)
T PF00667_consen  162 SCKPPLEELLELLPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY  219 (219)
T ss_dssp             TBTC-HHHHHHHS-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred             ccCCCHHHhhhhCCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence            9999999999999999999999999998899999999999999999899999999998

Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....

>PLN03115 ferredoxin--NADP(+) reductase; Provisional

Probab=100.00  E-value=4.2e-41  Score=355.40  Aligned_cols=269  Identities=25%  Similarity=0.425  Sum_probs=227.5

Q ss_pred             CCCcccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCcc
Q 006868          225 NNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK  303 (628)
Q Consensus       225 ~~~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~  303 (628)
                      +...++|. +|+.|.+|+.++...+++||+|+.+ ..+.|+||.+++|.|+...                          
T Consensus        85 ~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~-~~~~f~~GQfv~I~~~g~~--------------------------  137 (367)
T PLN03115         85 FRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTE-GEIPYREGQSIGVIPDGID--------------------------  137 (367)
T ss_pred             eccCCCeEEEEEeecccccCCCCCceEEEEEcCC-CCCCcCCCCEEEEEcCCcC--------------------------
Confidence            44556777 9999999999988899999999976 5789999999999875100                          


Q ss_pred             CCCCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHh
Q 006868          304 NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVL  383 (628)
Q Consensus       304 ~~~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l  383 (628)
                                                ..+                                                   
T Consensus       138 --------------------------~~g---------------------------------------------------  140 (367)
T PLN03115        138 --------------------------KNG---------------------------------------------------  140 (367)
T ss_pred             --------------------------CCC---------------------------------------------------
Confidence                                      001                                                   


Q ss_pred             hhCCCCCCCHHHHHHhcCCCcccceeeccCCCC---CCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE
Q 006868          384 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW  460 (628)
Q Consensus       384 ~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~  460 (628)
                                       .+..+|+|||||+|..   +++.++|+|+.+.|.+..+....|+||+||+++++  ||.|.+.
T Consensus       141 -----------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~--Gd~V~v~  201 (367)
T PLN03115        141 -----------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKP--GAEVKIT  201 (367)
T ss_pred             -----------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCC--cCEEEEE
Confidence                             0236799999999842   35789999999989876677789999999999999  9999999


Q ss_pred             eecCCCC-CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCC--CCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-Ccc
Q 006868          461 FQKGSLP-RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS--GPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFS  535 (628)
Q Consensus       461 ~~~g~F~-lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~--~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~  535 (628)
                      +|.|.|. +| +..+|+||||+|||||||+||++++......  ...++++||||||+.+|++|.+||++|.+.++ ++ 
T Consensus       202 GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f-  280 (367)
T PLN03115        202 GPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENF-  280 (367)
T ss_pred             eecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCE-
Confidence            9999764 56 6678999999999999999999987543321  11378999999999999999999999988755 67 


Q ss_pred             cCCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHH
Q 006868          536 EAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA  610 (628)
Q Consensus       536 ~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~  610 (628)
                           +++.++||++.    .++||||+|.++.+++++++.. +++|||||++ +|.++|.++|.+++...| +   +++
T Consensus       281 -----~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp~-~M~~~V~~~l~~l~~~~g-~---~~~  350 (367)
T PLN03115        281 -----RLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGLK-GMEKGIDDIMVSLAAKDG-I---DWF  350 (367)
T ss_pred             -----EEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCCH-HHHHHHHHHHHHHHHHhC-c---cHH
Confidence                 89999999865    5789999999999999988854 7899999997 999999999999998875 3   578


Q ss_pred             HHHHHHHHcCCEEEeec
Q 006868          611 NWLKALQRAGRYHVEAW  627 (628)
Q Consensus       611 ~~l~~l~~~~Ry~~dvw  627 (628)
                      +++++|+++|||+.|+|
T Consensus       351 ~~~~~lk~~~r~~~e~y  367 (367)
T PLN03115        351 EYKKQLKKAEQWNVEVY  367 (367)
T ss_pred             HHHHHHHHCCCeEEecC
Confidence            99999999999999998

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=100.00  E-value=1.1e-38  Score=326.82  Aligned_cols=215  Identities=43%  Similarity=0.751  Sum_probs=190.4

Q ss_pred             cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecC-CCCCC-CCCCCEEEEeCC
Q 006868          404 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPRP-PPSVPLILIGPG  481 (628)
Q Consensus       404 ~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-~F~lp-~~~~piimIa~G  481 (628)
                      .+|+|||||+|...++.++|+|+.+.+.......+.|.+|+||+++++  |+.|.+.+|.| .|.++ +...|+||||+|
T Consensus        47 ~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~--Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgG  124 (267)
T cd06182          47 QPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQL--GAKVTVFIRPAPSFRLPKDPTTPIIMVGPG  124 (267)
T ss_pred             CCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCC--CCEEEEEEecCCcccCCCCCCCCEEEEecC
Confidence            568999999984446899999999888766566678999999999999  99999999999 89998 667899999999


Q ss_pred             CChHHHHHHHHHHHHhcCC-CCCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCC-ccchhh
Q 006868          482 TGCAPFRGFVEERAIQSSS-GPAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-KVYVQH  558 (628)
Q Consensus       482 tGIAPfrs~l~~~~~~~~~-~~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~-k~yVqd  558 (628)
                      ||||||+++++++...... ...++++||||+|+. +|++|+++|++|.+...++      ++++++||++.. ++||++
T Consensus       125 tGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~------~~~~~~S~~~~~~~~~v~~  198 (267)
T cd06182         125 TGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALT------RLDVAFSREQAEPKVYVQD  198 (267)
T ss_pred             ccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcc------eEEEEEccCCCCCceehHH
Confidence            9999999999999863100 013789999999999 7999999999999874455      899999997764 789999


Q ss_pred             hHHHcHHHHHHHHhCCCEEEEeCCCCC-CHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868          559 KMLEQSQRIWNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       559 ~l~~~~~~v~~~l~~~~~iyvCG~~~~-M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                      .+.+..+.+++++.+++.||||||+ . |.+.|.++|.++++++++++.++|++++++|++.|||++|+|
T Consensus       199 ~l~~~~~~l~~~l~~~~~vyvCGp~-~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (267)
T cd06182         199 KLKEHAEELRRLLNEGAHIYVCGDA-KSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW  267 (267)
T ss_pred             HHHHhHHHHHHHHhcCCEEEEECCc-ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeEEecC
Confidence            9988888888878777899999999 7 999999999999999999999999999999999999999999

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=2.8e-35  Score=305.07  Aligned_cols=188  Identities=32%  Similarity=0.545  Sum_probs=162.6

Q ss_pred             ccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEe-ecCCCCCCCCCCCEEEEeCCCC
Q 006868          405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF-QKGSLPRPPPSVPLILIGPGTG  483 (628)
Q Consensus       405 ~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~-~~g~F~lp~~~~piimIa~GtG  483 (628)
                      +|+|||+|+|  .++.++|+|+.         .+.|.+|+||+++++  |++|.+.+ +.|.|.+++..+|+||||+|||
T Consensus       100 ~R~YSias~p--~~g~l~l~Vk~---------~~~G~~S~~L~~l~~--Gd~v~v~~~~~g~F~~~~~~~~lvlIAgGtG  166 (289)
T cd06201         100 PRFYSLASSS--SDGFLEICVRK---------HPGGLCSGYLHGLKP--GDTIKAFIRPNPSFRPAKGAAPVILIGAGTG  166 (289)
T ss_pred             CceEecCCCC--CCCeEEEEEEe---------CCCccchhhHhhCCC--cCEEEEEeccCCCccCCCCCCCEEEEecCcC
Confidence            6999999998  45789999943         467999999999999  99999986 5678988755789999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhHHH
Q 006868          484 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLE  562 (628)
Q Consensus       484 IAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~  562 (628)
                      ||||+++++++..      ..+++||||+|+++ |++|++||++|.+.+..+      +++.++||++ .++|||+.+..
T Consensus       167 IaP~~s~l~~~~~------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~------~~~~~~s~~~-~~g~v~~~l~~  233 (289)
T cd06201         167 IAPLAGFIRANAA------RRPMHLYWGGRDPASDFLYEDELDQYLADGRLT------QLHTAFSRTP-DGAYVQDRLRA  233 (289)
T ss_pred             HHHHHHHHHhhhc------cCCEEEEEEecCcccchHHHHHHHHHHHcCCCc------eEEEEECCCC-CcccchhHHHH
Confidence            9999999998631      16899999999996 999999999999884444      7888999875 38899999988


Q ss_pred             cHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868          563 QSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       563 ~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                      ..+.+..++.+++.||+|||+ .|.+.|.+.|.+|+.+++ +       -+..|+++|||.+|+|
T Consensus       234 ~~~~l~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y  289 (289)
T cd06201         234 DAERLRRLIEDGAQIMVCGSR-AMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY  289 (289)
T ss_pred             hHHHHHHHHHCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence            877777777788999999998 999999999999998664 2       3788999999999998

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

Probab=100.00  E-value=4e-35  Score=303.88  Aligned_cols=210  Identities=30%  Similarity=0.497  Sum_probs=177.6

Q ss_pred             cccceeeccCCCC---CCCeEEEEEEEEEeecCCC-CcccccccHHhhCcCCCCCceEEEEeecCCCCC-C-CCCCCEEE
Q 006868          404 KTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPR-P-PPSVPLIL  477 (628)
Q Consensus       404 ~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~l-p-~~~~piim  477 (628)
                      .+|+|||||+|..   +++.++|+|+.+.+.++.. ..+.|.+|+||+++++  |++|.+.+|.|.|.+ | +...|+||
T Consensus        63 ~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~~~~~~~~~~~~vl  140 (286)
T cd06208          63 KLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKP--GDDVQITGPVGKTMLLPEDPNATLIM  140 (286)
T ss_pred             CceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCC--CCEEEEEeecCCcccCCCCCCCCEEE
Confidence            5799999999843   2479999999987755432 4556999999999999  999999999998754 4 45679999


Q ss_pred             EeCCCChHHHHHHHHHHHHhcC--CCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCcEEEEEecCCC---
Q 006868          478 IGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFSRKQP---  551 (628)
Q Consensus       478 Ia~GtGIAPfrs~l~~~~~~~~--~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~~a~Sr~~~---  551 (628)
                      ||+|||||||+||++++.....  ....++++||||+|+++|++|.++|+++.+.++ ++      ++++++||++.   
T Consensus       141 IagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~------~~~~~~sr~~~~~~  214 (286)
T cd06208         141 IATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNF------RIDYAFSREQKNAD  214 (286)
T ss_pred             EecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcE------EEEEEEcCCCCCCC
Confidence            9999999999999999876521  012378999999999999999999999998755 56      89999999754   


Q ss_pred             -CccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868          552 -QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       552 -~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                       .++||++.+.+..+.+++++.. ++.||+|||+ .|.++|.++|.+++.     ...+|++++.+|+++|||+.|+|
T Consensus       215 g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp~-~m~~~v~~~L~~~~~-----~~~~~~~~~~~~~~~gr~~~~~~  286 (286)
T cd06208         215 GGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGLK-GMEPGVDDALTSVAE-----GGLAWEEFWESLKKKGRWHVEVY  286 (286)
T ss_pred             CCceehhhHHHHhHHHHHHHHhcCCcEEEEeCCc-hHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHcCCeEEecC
Confidence             4789999999887788877765 5699999998 999999999999987     23579999999999999999999

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=100.00  E-value=5.2e-35  Score=316.09  Aligned_cols=267  Identities=26%  Similarity=0.405  Sum_probs=217.3

Q ss_pred             CCCcccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCcc
Q 006868          225 NNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK  303 (628)
Q Consensus       225 ~~~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~  303 (628)
                      +...+++. +|+++++||+++...+|++|+|+.++....|+||..+.|.++...                          
T Consensus       137 ~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~--------------------------  190 (411)
T TIGR03224       137 YGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD--------------------------  190 (411)
T ss_pred             ccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC--------------------------
Confidence            44555666 999999999988888999999998754689999999999765100                          


Q ss_pred             CCCCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHh
Q 006868          304 NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVL  383 (628)
Q Consensus       304 ~~~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l  383 (628)
                                                ..+                                                   
T Consensus       191 --------------------------~~g---------------------------------------------------  193 (411)
T TIGR03224       191 --------------------------ASG---------------------------------------------------  193 (411)
T ss_pred             --------------------------cCC---------------------------------------------------
Confidence                                      000                                                   


Q ss_pred             hhCCCCCCCHHHHHHhcCCCcccceeeccCCCCC---CCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE
Q 006868          384 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW  460 (628)
Q Consensus       384 ~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~---~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~  460 (628)
                                       .+...|+|||+|+|..+   .+.++|+|+++.. +..+..+.|.+|+||+++++  ||+|.+.
T Consensus       194 -----------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~--Gd~v~v~  253 (411)
T TIGR03224       194 -----------------KPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKK--GDKVQVI  253 (411)
T ss_pred             -----------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCC--cCEEEEE
Confidence                             01257999999987221   2579999998864 33455678999999999999  9999999


Q ss_pred             eecCC-CCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCC
Q 006868          461 FQKGS-LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAK  538 (628)
Q Consensus       461 ~~~g~-F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~  538 (628)
                      +|.|. |.+| ...+|+||||+|||||||++|++++......+..++++||||+|+.+|++|.+||++|.+.+  +    
T Consensus       254 GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~--~----  327 (411)
T TIGR03224       254 GPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDF--I----  327 (411)
T ss_pred             eccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcCCCCCEEEEEecCccccchHHHHHHHHHhcC--c----
Confidence            99996 6677 55689999999999999999999987632111238999999999999999999999998652  4    


Q ss_pred             CCcEEEEEecCCC-CccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006868          539 GGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKAL  616 (628)
Q Consensus       539 ~~~~~~a~Sr~~~-~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l  616 (628)
                        ++++++||++. .++||||.+.+..+.+++++.. ++.||+|||+ .|.++|.++|.++..+.+ +.   ++.++++|
T Consensus       328 --~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp~-~M~~~v~~~L~~~~~~~~-~~---~~~~~~~l  400 (411)
T TIGR03224       328 --DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGLK-GMEEGVLDAFRDVCATNG-LS---WETLEPRL  400 (411)
T ss_pred             --eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-cC---HHHHHHHH
Confidence              67789999654 5899999999988888888764 6899999998 999999999999997653 44   46799999


Q ss_pred             HHcCCEEEeec
Q 006868          617 QRAGRYHVEAW  627 (628)
Q Consensus       617 ~~~~Ry~~dvw  627 (628)
                      +++|||+.|+|
T Consensus       401 ~~~~r~~~e~~  411 (411)
T TIGR03224       401 RAEGRLHLETY  411 (411)
T ss_pred             HHCCCeEEecC
Confidence            99999999999

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=3.5e-35  Score=297.53  Aligned_cols=210  Identities=30%  Similarity=0.407  Sum_probs=178.6

Q ss_pred             CCCHHHHHHhcCC-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecC-CC
Q 006868          390 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG-SL  466 (628)
Q Consensus       390 ~~p~~~l~~~lp~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g-~F  466 (628)
                      ..|||++...++. ..+|+|||||+|  .++.++|+|+.+...    ..+.|.+|+||++ +++  |++|.+.+|.| .|
T Consensus        32 f~pGQ~v~l~~~~~~~~R~YSIas~p--~~~~l~l~Vk~~~~~----~~~~G~~S~~L~~~~~~--Gd~v~i~gp~gg~F  103 (245)
T cd06200          32 WQAGDIAEIGPRHPLPHREYSIASLP--ADGALELLVRQVRHA----DGGLGLGSGWLTRHAPI--GASVALRLRENPGF  103 (245)
T ss_pred             ccCCcEEEecCCCCCCCcceEeccCC--CCCEEEEEEEEeccC----CCCCeeechhhhhCCCC--CCEEEEEecCCCcc
Confidence            3589998777763 678999999998  367899999776321    1245999999985 589  99999999865 78


Q ss_pred             CCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868          467 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVA  545 (628)
Q Consensus       467 ~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a  545 (628)
                      .+|+..+|+||||+|||||||+||++++.....    ++++||||+|+.+ |++|.+||++|.+.++.+      +++++
T Consensus       104 ~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~----~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~------~~~~~  173 (245)
T cd06200         104 HLPDDGRPLILIGNGTGLAGLRSHLRARARAGR----HRNWLLFGERQAAHDFFCREELEAWQAAGHLA------RLDLA  173 (245)
T ss_pred             cCCCCCCCEEEEecCcChHHHHHHHHHHHhccC----CCeEEEEecCCccccHhHHHHHHHHHHCCCcc------eEEEE
Confidence            887556899999999999999999999976542    6899999999986 999999999999884444      88999


Q ss_pred             EecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEe
Q 006868          546 FSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVE  625 (628)
Q Consensus       546 ~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~d  625 (628)
                      +||++..++||++.+.++.+.+++++..++.||+|||++.|+++|+++|.+++++.          .+++|+++|||++|
T Consensus       174 ~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~~~~~~~----------~~~~~~~~~r~~~d  243 (245)
T cd06200         174 FSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDEILGEE----------AVEALLAAGRYRRD  243 (245)
T ss_pred             EccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHHHHHHHH----------HHHHHHHCCCeEEe
Confidence            99988778999999998888877777678999999997789999999999999752          48899999999999


Q ss_pred             ec
Q 006868          626 AW  627 (628)
Q Consensus       626 vw  627 (628)
                      +|
T Consensus       244 ~~  245 (245)
T cd06200         244 VY  245 (245)
T ss_pred             cC
Confidence            99

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD

>PLN03116 ferredoxin--NADP+ reductase; Provisional

Probab=100.00  E-value=6.9e-35  Score=304.78  Aligned_cols=224  Identities=27%  Similarity=0.418  Sum_probs=183.5

Q ss_pred             CCHHHHHHhcCC---------CcccceeeccCCCCC---CCeEEEEEEEEEeecCCCC----cccccccHHhhCcCCCCC
Q 006868          391 MPIDWLVQLVPP---------LKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKR----KRTGLCSVWLAGLDPQQG  454 (628)
Q Consensus       391 ~p~~~l~~~lp~---------~~~R~YSIaSsp~~~---~~~i~l~V~~v~~~~~~~~----~~~G~~S~~L~~l~~~~G  454 (628)
                      .|||++...+|.         ...|+|||||+|..+   +..++|+|+.+.|.++...    .+.|.+|+||+++++  |
T Consensus        58 ~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~--G  135 (307)
T PLN03116         58 WEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKP--G  135 (307)
T ss_pred             ecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCC--C
Confidence            477777665552         147999999998422   2389999998876654322    268999999999999  9


Q ss_pred             ceEEEEeecCCCCC-C--CCCCCEEEEeCCCChHHHHHHHHHHHHhcC--CCCCCCeEEEEcCCCCCccccHHHHHHhHh
Q 006868          455 IYIPAWFQKGSLPR-P--PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNEDDFLYRELWLSHSL  529 (628)
Q Consensus       455 ~~v~i~~~~g~F~l-p--~~~~piimIa~GtGIAPfrs~l~~~~~~~~--~~~~~~~~L~~G~R~~~d~ly~~el~~~~~  529 (628)
                      +.|.+.+|.|.|.+ |  +...|+||||+|||||||+||++++.....  .+..++++||||+|+.+|++|.+||++|.+
T Consensus       136 d~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~  215 (307)
T PLN03116        136 DKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLK  215 (307)
T ss_pred             CEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHH
Confidence            99999999999876 4  345799999999999999999998866432  112368999999999999999999999998


Q ss_pred             cCC-CcccCCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCC
Q 006868          530 NDG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEA  604 (628)
Q Consensus       530 ~~g-~l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~  604 (628)
                      .++ ++      +++.++||++.    .++||++.|.+..+.++..+..++.+|+|||+ .|++++.++|.+++...+ +
T Consensus       216 ~~~~~~------~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp~-~mv~~v~~~L~~~~~~~g-~  287 (307)
T PLN03116        216 DYPDNF------RYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLK-GMMPGIQDTLKRVAEERG-E  287 (307)
T ss_pred             hCCCcE------EEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCCH-HHHHHHHHHHHHHHHHcC-c
Confidence            755 57      89999999764    36799999988777776666568899999998 999999999999987754 4


Q ss_pred             CHHHHHHHHHHHHHcCCEEEeec
Q 006868          605 SRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       605 ~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                         +|++.++.|+++|||++|+|
T Consensus       288 ---~~~~~~~~l~~~~r~~~~~~  307 (307)
T PLN03116        288 ---SWEEKLSGLKKNKQWHVEVY  307 (307)
T ss_pred             ---cHHHHHHHHHHcCceEEecC
Confidence               35689999999999999999

>PRK09004 FMN-binding protein MioC; Provisional

Probab=100.00  E-value=5.4e-33  Score=258.17  Aligned_cols=146  Identities=25%  Similarity=0.312  Sum_probs=134.3

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL   85 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~   85 (628)
                      |++|.|+|||+|||||.+|++|++.+.+.|+.++++++.+  ++++..++.+||++||||+|++|+|++.|+++|+... 
T Consensus         1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~--~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~-   77 (146)
T PRK09004          1 MADITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL--LDDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQK-   77 (146)
T ss_pred             CCeEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC--HHHhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcC-
Confidence            5689999999999999999999999999999999888765  5688899999999999999999999999999997642 


Q ss_pred             cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868           86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                        ..++|++|+|||+||++|++||.+++.++++|+++||+++.+++++|+....++++.|++|.+.++..|
T Consensus        78 --~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~  146 (146)
T PRK09004         78 --PDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL  146 (146)
T ss_pred             --CCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence              238999999999999999999999999999999999999999999999876668999999999988754

>PRK08105 flavodoxin; Provisional

Probab=100.00  E-value=1.2e-32  Score=256.76  Aligned_cols=147  Identities=31%  Similarity=0.413  Sum_probs=133.5

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL   85 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~   85 (628)
                      |++|.|+|||+|||||.+|++|++.|.+.|+.+.+.++++++...+.+++.+||++||||+|++|+|+.+|+++|++. .
T Consensus         1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~-~   79 (149)
T PRK08105          1 MAKVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDT-A   79 (149)
T ss_pred             CCeEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchhcccCCeEEEEECCCCCCCCChhHHHHHHHHHhc-C
Confidence            568999999999999999999999999999999999998876444456789999999999999999999999999754 1


Q ss_pred             cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868           86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                        ..|+|++|+||||||++|++||.+++.++++|+++||+++.+++++|++++.++++.|++|+++ |..+
T Consensus        80 --~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~  147 (149)
T PRK08105         80 --GYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL  147 (149)
T ss_pred             --cccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence              2489999999999999999999999999999999999999999999998877899999999999 5443

>PRK05723 flavodoxin; Provisional

Probab=100.00  E-value=4.1e-32  Score=253.07  Aligned_cols=147  Identities=24%  Similarity=0.295  Sum_probs=129.1

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCC--CeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE--DTVIFVVSTTGQGDTPDSMKVFWRFLLQKS   84 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~--~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~   84 (628)
                      |+|.|+|||+|||||.+|++|++.+.+.|+.+.+...  .+..++..+  +.+||++||||+|++|+|+..|+++|.+..
T Consensus         1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~--~~~~~~~~~~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~   78 (151)
T PRK05723          1 MKVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPR--ASLQDLQAFAPEALLAVTSTTGMGELPDNLMPLYSAIRDQL   78 (151)
T ss_pred             CeEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecCc--CCHhHHHhCCCCeEEEEECCCCCCCCchhHHHHHHHHHhcC
Confidence            5799999999999999999999999999988766433  333344444  899999999999999999999999997642


Q ss_pred             CcccccCCcEEEEEecCCcCh-hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868           85 LSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH  157 (628)
Q Consensus        85 ~~~~~l~~~~~aVfGlGds~y-~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~  157 (628)
                       + ..|+|++||||||||++| ++||.+++.++++|+++||+++.+++++|++...++++++++|.+++|++|.
T Consensus        79 -~-~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~l~  150 (151)
T PRK05723         79 -P-AAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAALK  150 (151)
T ss_pred             -c-cCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHHhc
Confidence             1 249999999999999999 7999999999999999999999999999998766699999999999998873

>PRK07308 flavodoxin; Validated

Probab=99.95  E-value=8e-27  Score=217.62  Aligned_cols=144  Identities=26%  Similarity=0.298  Sum_probs=131.8

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL   85 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~   85 (628)
                      |+++.|+|+|+||||+++|+.|++.+.+.|+.+++.++++.+..++.+++.|||++||||+|.+|+++.+|+++|.... 
T Consensus         1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~-   79 (146)
T PRK07308          1 MALAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADLD-   79 (146)
T ss_pred             CceEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHhHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCC-
Confidence            5579999999999999999999999999999999999999888888899999999999999999999999999996653 


Q ss_pred             cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHH
Q 006868           86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR  154 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~  154 (628)
                          ++|++++|||+||+.|+|||.+++.++++|+++||+++.+...++..+++...+.+.+|.++|.+
T Consensus        80 ----l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~  144 (146)
T PRK07308         80 ----LSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEELAA  144 (146)
T ss_pred             ----CCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHHHh
Confidence                78999999999999999999999999999999999999999999998766667777778877654

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=99.94  E-value=2.3e-26  Score=230.09  Aligned_cols=180  Identities=26%  Similarity=0.363  Sum_probs=150.1

Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCCC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR  468 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~l  468 (628)
                      ..|||++...+|....|+|||+|.| ...+.++|+|+.         ...|.+|++|. .+++  |++|.+.+|.|.|.+
T Consensus        26 ~~pGQ~v~l~~~~~~~r~ySi~s~~-~~~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~   93 (224)
T cd06189          26 FLAGQYLDLLLDDGDKRPFSIASAP-HEDGEIELHIRA---------VPGGSFSDYVFEELKE--NGLVRIEGPLGDFFL   93 (224)
T ss_pred             cCCCCEEEEEcCCCCceeeecccCC-CCCCeEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEecCCccEEe
Confidence            4699999888887789999999998 446889999944         35689999986 5999  999999999999988


Q ss_pred             C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868          469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  547 (628)
Q Consensus       469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S  547 (628)
                      + ....++||||+|||||||++++++.......   .+++|+||+|+.+|++|++||+++.+.+.++      +++.++|
T Consensus        94 ~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s  164 (224)
T cd06189          94 REDSDRPLILIAGGTGFAPIKSILEHLLAQGSK---RPIHLYWGARTEEDLYLDELLEAWAEAHPNF------TYVPVLS  164 (224)
T ss_pred             ccCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhccCHHHHHHHHHhCCCe------EEEEEeC
Confidence            7 5578999999999999999999999876533   7899999999999999999999999876777      8888899


Q ss_pred             cCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          548 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       548 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ++++    .++||++.+.+....     ..+..+|+|||+ .|.+++.+.|.+
T Consensus       165 ~~~~~~~g~~g~v~~~l~~~~~~-----~~~~~v~vCGp~-~m~~~~~~~l~~  211 (224)
T cd06189         165 EPEEGWQGRTGLVHEAVLEDFPD-----LSDFDVYACGSP-EMVYAARDDFVE  211 (224)
T ss_pred             CCCcCCccccccHHHHHHhhccC-----ccccEEEEECCH-HHHHHHHHHHHH
Confidence            8543    467888876544211     136889999998 899988887765

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase

Probab=99.94  E-value=8.1e-27  Score=216.73  Aligned_cols=138  Identities=46%  Similarity=0.631  Sum_probs=123.9

Q ss_pred             EEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC--ccCCCCCCeEEEEEecCCCCCCChhHH-HHHHHHHhcc--C
Q 006868           11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD--ARCLPEEDTVIFVVSTTGQGDTPDSMK-VFWRFLLQKS--L   85 (628)
Q Consensus        11 I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~--~~~l~~~~~vi~~~sT~g~G~~p~~~~-~F~~~L~~~~--~   85 (628)
                      |+|+|+|||||++|+.|++.|.+.|++++++++++++  +.++..++.+||++||||+|++|+++. .|.+++....  .
T Consensus         1 I~Y~S~tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~   80 (143)
T PF00258_consen    1 IVYGSMTGNTEKMAEAIAEGLRERGVEVRVVDLDDFDDSPSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKEL   80 (143)
T ss_dssp             EEEETSSSHHHHHHHHHHHHHHHTTSEEEEEEGGGSCHHHHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGG
T ss_pred             CEEECCchhHHHHHHHHHHHHHHcCCceeeechhhhhhhhhhhhhhceeeEeecccCCCcchhhhhhhhhhccccccccc
Confidence            8999999999999999999999999999999999999  448899999999999999999999998 5555554431  1


Q ss_pred             cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHH
Q 006868           86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPW  148 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W  148 (628)
                      ....+++++|+|||+||+.|..||.+++.++++|+++|++++.|++++|+.+.++.++.|+.|
T Consensus        81 ~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W  143 (143)
T PF00258_consen   81 SKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW  143 (143)
T ss_dssp             GGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred             cccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence            234589999999999999999999999999999999999999999999998755589999998

Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=99.93  E-value=3.7e-26  Score=227.78  Aligned_cols=185  Identities=26%  Similarity=0.394  Sum_probs=147.2

Q ss_pred             CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCC
Q 006868          390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  466 (628)
Q Consensus       390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F  466 (628)
                      ..||||+...+|.   ...|+|||+|+| ...+.++|+|+.+         ..|.+|+||.++++  |++|.+.+|.|.|
T Consensus        23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~~~~~l~vk~~---------~~G~~s~~l~~~~~--G~~v~i~gP~G~~   90 (223)
T cd00322          23 FKPGQYVDLHLPGDGRGLRRAYSIASSP-DEEGELELTVKIV---------PGGPFSAWLHDLKP--GDEVEVSGPGGDF   90 (223)
T ss_pred             cCCCcEEEEEecCCCCcceeeeeccCCC-CCCCeEEEEEEEe---------CCCchhhHHhcCCC--CCEEEEECCCccc
Confidence            3699999888875   679999999998 3458899999553         46999999999999  9999999999998


Q ss_pred             CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868          467 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  545 (628)
Q Consensus       467 ~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a  545 (628)
                      .++ ....|+||||+|||||||+++++++......   ++++||||+|+.+|++|.+||+++.+.+.++      +++++
T Consensus        91 ~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~  161 (223)
T cd00322          91 FLPLEESGPVVLIAGGIGITPFRSMLRHLAADKPG---GEITLLYGARTPADLLFLDELEELAKEGPNF------RLVLA  161 (223)
T ss_pred             ccCcccCCcEEEEecCCchhHHHHHHHHHHhhCCC---CcEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEE
Confidence            666 6678999999999999999999999876433   7899999999999999999999999875666      88999


Q ss_pred             EecCCCCccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          546 FSRKQPQKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       546 ~Sr~~~~k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ++|++....+.+..+........... ..++.+|+|||+ .|.+.+++.|.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~-~m~~~~~~~L~~  212 (223)
T cd00322         162 LSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGPP-AMAKAVREALVS  212 (223)
T ss_pred             ecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECCH-HHHHHHHHHHHH
Confidence            99876543333322211111111111 237899999998 899998888765

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=99.93  E-value=2.4e-26  Score=233.40  Aligned_cols=185  Identities=16%  Similarity=0.176  Sum_probs=144.0

Q ss_pred             CCCHHHHHHhcC--C-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeec-CC
Q 006868          390 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK-GS  465 (628)
Q Consensus       390 ~~p~~~l~~~lp--~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~-g~  465 (628)
                      ..||||+...++  . ...|+|||+|+|  ..+.++|+|+.+         +.|.+|+||+++++  |++|.+.+|. |.
T Consensus        31 ~~pGQfv~l~~~~~g~~~~R~ySias~p--~~~~l~~~ik~~---------~~G~~S~~L~~l~~--Gd~v~i~gp~~g~   97 (248)
T PRK10926         31 FTAGQFTKLGLEIDGERVQRAYSYVNAP--DNPDLEFYLVTV---------PEGKLSPRLAALKP--GDEVQVVSEAAGF   97 (248)
T ss_pred             CCCCCEEEEEEecCCcEEEeeecccCCC--CCCeEEEEEEEe---------CCCCcChHHHhCCC--CCEEEEecCCCcc
Confidence            358999877664  2 246999999998  345889998543         57999999999999  9999999987 56


Q ss_pred             CCCC-C-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCcE
Q 006868          466 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGF  542 (628)
Q Consensus       466 F~lp-~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~  542 (628)
                      |.++ . ...|+||||+|||||||+++++++......   .+++||||+|+.+|++|.+||++|.+.++ ++      ++
T Consensus        98 f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~------~v  168 (248)
T PRK10926         98 FVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLERF---KNLVLVHAARYAADLSYLPLMQELEQRYEGKL------RI  168 (248)
T ss_pred             eEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCCC---CcEEEEEeCCcHHHHHHHHHHHHHHHhCcCCE------EE
Confidence            6666 3 347999999999999999999998654433   78999999999999999999999988753 67      89


Q ss_pred             EEEEecCCC---CccchhhhHHHc-HHHHHHH-H-hCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          543 YVAFSRKQP---QKVYVQHKMLEQ-SQRIWNL-L-LSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       543 ~~a~Sr~~~---~k~yVqd~l~~~-~~~v~~~-l-~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                      ..++||++.   .+++|++.+.+. ....... + .+++.+|+|||+ .|.+++.+.|.+.
T Consensus       169 ~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~-~Mv~~~~~~l~~~  228 (248)
T PRK10926        169 QTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNP-QMVRDTQQLLKET  228 (248)
T ss_pred             EEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCH-HHHHHHHHHHHHh
Confidence            999998653   357888766432 1111111 1 236899999998 9999988777653

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=99.93  E-value=7.2e-26  Score=234.53  Aligned_cols=179  Identities=22%  Similarity=0.362  Sum_probs=140.6

Q ss_pred             ccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCCCCCCCEEEEeCCCCh
Q 006868          405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGC  484 (628)
Q Consensus       405 ~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~GtGI  484 (628)
                      .|+|||+|+| ...+.++|+|++........+...|.+|+||+++++  |++|.+.+|.|.|.+++...|+||||+||||
T Consensus        86 ~R~ySias~p-~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~~vlIAgGtGI  162 (283)
T cd06188          86 SRAYSLANYP-AEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKP--GDKVTASGPFGEFFIKDTDREMVFIGGGAGM  162 (283)
T ss_pred             ccccCcCCCC-CCCCeEEEEEEEeccCCccCCCCCceehhHHhcCCC--CCEEEEECccccccccCCCCcEEEEEecccH
Confidence            4999999998 356889999976533221113457999999999999  9999999999999887556799999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC------Cccchhh
Q 006868          485 APFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQH  558 (628)
Q Consensus       485 APfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yVqd  558 (628)
                      |||+++++++......  ..+++||||+|+.+|++|.+||+++.+.++++      ++++++|++..      .++||++
T Consensus       163 tP~~s~l~~~~~~~~~--~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~~~~G~v~~  234 (283)
T cd06188         163 APLRSHIFHLLKTLKS--KRKISFWYGARSLKELFYQEEFEALEKEFPNF------KYHPVLSEPQPEDNWDGYTGFIHQ  234 (283)
T ss_pred             hHHHHHHHHHHhcCCC--CceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEEEEECCCCccCCCCCcceeecH
Confidence            9999999997664421  26899999999999999999999999876777      78888887531      3678888


Q ss_pred             hHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          559 KMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       559 ~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                      .+.+....  ... ..+..+|+|||+ .|.+.+.+.|.+.
T Consensus       235 ~~~~~~~~--~~~~~~~~~vyiCGP~-~m~~~~~~~l~~~  271 (283)
T cd06188         235 VLLENYLK--KHPAPEDIEFYLCGPP-PMNSAVIKMLDDL  271 (283)
T ss_pred             HHHHHHhc--cCCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence            76654210  001 125789999998 9999888877653

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=99.93  E-value=6.8e-26  Score=228.83  Aligned_cols=181  Identities=20%  Similarity=0.332  Sum_probs=149.0

Q ss_pred             CCCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCC
Q 006868          390 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLP  467 (628)
Q Consensus       390 ~~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~  467 (628)
                      ..|||++...+|.. ..|+|||+|.| .+.+.++|+|+.         ...|.+|+||. .+++  |++|.+.+|.|.|.
T Consensus        36 ~~pGQ~v~l~~~~~~~~r~ySi~s~~-~~~~~l~l~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~  103 (238)
T cd06211          36 FQAGQYVNLQAPGYEGTRAFSIASSP-SDAGEIELHIRL---------VPGGIATTYVHKQLKE--GDELEISGPYGDFF  103 (238)
T ss_pred             cCCCCeEEEEcCCCCCccccccCCCC-CCCCEEEEEEEE---------CCCCcchhhHhhcCCC--CCEEEEECCccceE
Confidence            36899988888865 68999999998 456889999954         35699999996 7999  99999999999998


Q ss_pred             CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868          468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  546 (628)
Q Consensus       468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~  546 (628)
                      ++ +...|+||||+|||||||++++++....+..   .+++||||+|+.+|++|.+||+++.+.+.++      +++.++
T Consensus       104 ~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~  174 (238)
T cd06211         104 VRDSDQRPIIFIAGGSGLSSPRSMILDLLERGDT---RKITLFFGARTRAELYYLDEFEALEKDHPNF------KYVPAL  174 (238)
T ss_pred             ecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCCC---CcEEEEEecCChhhhccHHHHHHHHHhCCCe------EEEEEE
Confidence            77 5558999999999999999999998876543   6899999999999999999999998876677      788889


Q ss_pred             ecCCC------CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          547 SRKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       547 Sr~~~------~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ||+..      .++||++.+.+....    -.+++.+|+|||+ .|.+++.+.|.+
T Consensus       175 s~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp~-~m~~~~~~~L~~  225 (238)
T cd06211         175 SREPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGPP-PMIDACIKTLMQ  225 (238)
T ss_pred             CCCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECCH-HHHHHHHHHHHH
Confidence            98542      357888766543210    0136799999998 999998887765

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>PRK08051 fre FMN reductase; Validated

Probab=99.93  E-value=6.4e-26  Score=228.11  Aligned_cols=180  Identities=21%  Similarity=0.273  Sum_probs=145.8

Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHH-hhCcCCCCCceEEEEeecCCCCC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW-LAGLDPQQGIYIPAWFQKGSLPR  468 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~-L~~l~~~~G~~v~i~~~~g~F~l  468 (628)
                      ..|||++...+|....|+|||+|.| ...+.++|+|+.+         ..|..+.+ +.++++  |++|.+.+|.|.|.+
T Consensus        30 ~~pGQ~v~l~~~~~~~r~ySias~p-~~~~~l~~~v~~~---------~~~~~~~~~~~~l~~--G~~v~v~gP~G~~~~   97 (232)
T PRK08051         30 FRAGQYLMVVMGEKDKRPFSIASTP-REKGFIELHIGAS---------ELNLYAMAVMERILK--DGEIEVDIPHGDAWL   97 (232)
T ss_pred             cCCCCEEEEEcCCCcceeecccCCC-CCCCcEEEEEEEc---------CCCcchHHHHHHcCC--CCEEEEEcCCCceEc
Confidence            4699999888887788999999998 3567899998543         33444444 568999  999999999999877


Q ss_pred             C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868          469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  547 (628)
Q Consensus       469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S  547 (628)
                      + +...|+||||+||||||+++++++.......   .+++|+||+|+.+|.+|.+||+++.+.++++      +++.++|
T Consensus        98 ~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~~---~~v~l~~g~r~~~~~~~~~el~~l~~~~~~~------~~~~~~~  168 (232)
T PRK08051         98 REESERPLLLIAGGTGFSYARSILLTALAQGPN---RPITLYWGGREEDHLYDLDELEALALKHPNL------HFVPVVE  168 (232)
T ss_pred             cCCCCCcEEEEecCcCcchHHHHHHHHHHhCCC---CcEEEEEEeccHHHhhhhHHHHHHHHHCCCc------EEEEEeC
Confidence            6 5568999999999999999999999876543   7899999999999999999999999886677      8888888


Q ss_pred             cCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHH-HH
Q 006868          548 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF-EE  596 (628)
Q Consensus       548 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L-~~  596 (628)
                      ++++    .++||++.+.+....     ..+..+|+|||+ .|+++|.+.| .+
T Consensus       169 ~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyicGp~-~m~~~v~~~l~~~  216 (232)
T PRK08051        169 QPEEGWQGKTGTVLTAVMQDFGS-----LAEYDIYIAGRF-EMAKIARELFCRE  216 (232)
T ss_pred             CCCCCcccceeeehHHHHhhccC-----cccCEEEEECCH-HHHHHHHHHHHHH
Confidence            7543    467888766543111     135789999998 9999988777 44

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=99.93  E-value=8.2e-26  Score=227.24  Aligned_cols=183  Identities=18%  Similarity=0.196  Sum_probs=147.1

Q ss_pred             CCCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecCCCC
Q 006868          390 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP  467 (628)
Q Consensus       390 ~~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~  467 (628)
                      ..||||+...+|.. .+|+|||+|.| ...+.++|+|+.         ...|.+|.||.+ +++  |++|.+.+|.|.|.
T Consensus        24 ~~pGQ~v~l~~~~~~~~r~ySi~s~~-~~~~~~~~~vk~---------~~~G~~s~~l~~~~~~--g~~v~v~gP~G~~~   91 (232)
T cd06190          24 FLPGQYALLALPGVEGARAYSMANLA-NASGEWEFIIKR---------KPGGAASNALFDNLEP--GDELELDGPYGLAY   91 (232)
T ss_pred             cCCCCEEEEECCCCCcccCccCCcCC-CCCCEEEEEEEE---------cCCCcchHHHhhcCCC--CCEEEEECCcccce
Confidence            46899999988877 78999999998 356889999943         356899999975 799  99999999999987


Q ss_pred             CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868          468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  546 (628)
Q Consensus       468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~  546 (628)
                      ++ +...++||||+|||||||++++++....... ...+++|+||+|+.+|++|.+||+++.+.+.++      ++++++
T Consensus        92 ~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~  164 (232)
T cd06190          92 LRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYL-SDRPVDLFYGGRTPSDLCALDELSALVALGARL------RVTPAV  164 (232)
T ss_pred             ecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccC-CCCeEEEEEeecCHHHHhhHHHHHHHHHhCCCE------EEEEEe
Confidence            76 5568999999999999999999998875211 127899999999999999999999999874555      788888


Q ss_pred             ecCCC--------CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          547 SRKQP--------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       547 Sr~~~--------~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      |+++.        .++|+++.+.+....    ...+..||+|||+ .|.+.+.+.|.+
T Consensus       165 s~~~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGp~-~m~~~v~~~l~~  217 (232)
T cd06190         165 SDAGSGSAAGWDGPTGFVHEVVEATLGD----RLAEFEFYFAGPP-PMVDAVQRMLMI  217 (232)
T ss_pred             CCCCCCcCCCccCCcCcHHHHHHhhccC----CccccEEEEECCH-HHHHHHHHHHHH
Confidence            87643        246787766554221    1237899999998 888888776655

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=99.93  E-value=1.1e-25  Score=239.18  Aligned_cols=179  Identities=20%  Similarity=0.304  Sum_probs=149.1

Q ss_pred             CCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCCCC
Q 006868          391 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPRP  469 (628)
Q Consensus       391 ~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~lp  469 (628)
                      .||||+...+|....|+|||+|+| .+.+.++|+|+.         .+.|.+|+||. .+++  |+.|.+.+|.|.|.++
T Consensus       133 ~pGQfv~l~~~~~~~R~ySias~p-~~~~~l~~~ik~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~~~  200 (339)
T PRK07609        133 LAGQYIEFILKDGKRRSYSIANAP-HSGGPLELHIRH---------MPGGVFTDHVFGALKE--RDILRIEGPLGTFFLR  200 (339)
T ss_pred             CCCCeEEEECCCCceeeeecCCCC-CCCCEEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEEcCceeEEec
Confidence            589998888887778999999998 345899999944         46799999996 7999  9999999999999988


Q ss_pred             -CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006868          470 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR  548 (628)
Q Consensus       470 -~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr  548 (628)
                       ....|+||||+|||||||++++++....+..   .+++||||+|+++|++|.++|++|.++++++      +++.++||
T Consensus       201 ~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~---~~i~l~~g~r~~~dl~~~e~l~~~~~~~~~~------~~~~~~s~  271 (339)
T PRK07609        201 EDSDKPIVLLASGTGFAPIKSIVEHLRAKGIQ---RPVTLYWGARRPEDLYLSALAEQWAEELPNF------RYVPVVSD  271 (339)
T ss_pred             CCCCCCEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEecCChHHhccHHHHHHHHHhCCCe------EEEEEecC
Confidence             5678999999999999999999999876543   6899999999999999999999998776777      88889998


Q ss_pred             CC------CCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          549 KQ------PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       549 ~~------~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      +.      ..++||++.+.+....     ..+..+|+|||+ .|.+.+.+.|.+
T Consensus       272 ~~~~~~~~g~~G~v~~~~~~~~~~-----~~~~~vy~CGp~-~m~~~~~~~l~~  319 (339)
T PRK07609        272 ALDDDAWTGRTGFVHQAVLEDFPD-----LSGHQVYACGSP-VMVYAARDDFVA  319 (339)
T ss_pred             CCCCCCccCccCcHHHHHHhhccc-----ccCCEEEEECCH-HHHHHHHHHHHH
Confidence            42      1467888877543211     136799999998 999988877765

>PRK06703 flavodoxin; Provisional

Probab=99.93  E-value=6.4e-25  Score=206.00  Aligned_cols=148  Identities=29%  Similarity=0.322  Sum_probs=135.0

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL   85 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~   85 (628)
                      ||+++|+|+|+||||+++|+.|++.+...|+.+++.++++.+..++.+++.|||++||||.|.+|+++..|+++|.... 
T Consensus         1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~-   79 (151)
T PRK06703          1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENID-   79 (151)
T ss_pred             CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCC-
Confidence            5789999999999999999999999999999999999999887788899999999999999999999999999986543 


Q ss_pred             cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCC-CCchhhHHHHHHHHHHHHHh
Q 006868           86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHP-SGYEGALDPWMRSLWRRLHQ  158 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~-~g~~~~~~~W~~~l~~~l~~  158 (628)
                          +++++++|||+||++|++||.+++.++++|+++|++.+.+...++..+. +...+.+.+|.++|.+.+.+
T Consensus        80 ----l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  149 (151)
T PRK06703         80 ----LSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKFAQ  149 (151)
T ss_pred             ----CCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHHHh
Confidence                7799999999999999999999999999999999999998889888864 35778889999999877653

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=99.93  E-value=1.5e-25  Score=224.83  Aligned_cols=178  Identities=23%  Similarity=0.352  Sum_probs=147.7

Q ss_pred             CCCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecCCCC
Q 006868          390 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP  467 (628)
Q Consensus       390 ~~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~  467 (628)
                      ..|||++...+|.. ..|+|||+|.|.  .+.++|+|+.         ...|.+|+||.+ +++  |+.|.+.+|.|.|.
T Consensus        31 ~~pGQ~v~l~~~~~~~~r~ysi~s~~~--~~~i~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~   97 (228)
T cd06209          31 FLPGQYVNLQVPGTDETRSYSFSSAPG--DPRLEFLIRL---------LPGGAMSSYLRDRAQP--GDRLTLTGPLGSFY   97 (228)
T ss_pred             cCCCCEEEEEeCCCCcccccccccCCC--CCeEEEEEEE---------cCCCcchhhHHhccCC--CCEEEEECCcccce
Confidence            36899988878765 489999999983  3889999844         357999999987 999  99999999999987


Q ss_pred             CCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868          468 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  547 (628)
Q Consensus       468 lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S  547 (628)
                      ++....|++|||+|||||||++++++.......   ++++|+||+|+.+|++|.++|++|.+.++++      ++.+++|
T Consensus        98 ~~~~~~~~vlia~GtGIaP~~~ll~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s  168 (228)
T cd06209          98 LREVKRPLLMLAGGTGLAPFLSMLDVLAEDGSA---HPVHLVYGVTRDADLVELDRLEALAERLPGF------SFRTVVA  168 (228)
T ss_pred             ecCCCCeEEEEEcccCHhHHHHHHHHHHhcCCC---CcEEEEEecCCHHHhccHHHHHHHHHhCCCe------EEEEEEc
Confidence            774458999999999999999999998876533   7899999999999999999999999876777      8888999


Q ss_pred             cCCC---CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          548 RKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       548 r~~~---~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ++..   .++||++.+.+..      +. .++.+|+|||+ .|++++++.|.+
T Consensus       169 ~~~~~~~~~g~v~~~~~~~~------~~~~~~~v~icGp~-~m~~~~~~~l~~  214 (228)
T cd06209         169 DPDSWHPRKGYVTDHLEAED------LNDGDVDVYLCGPP-PMVDAVRSWLDE  214 (228)
T ss_pred             CCCccCCCcCCccHHHHHhh------ccCCCcEEEEeCCH-HHHHHHHHHHHH
Confidence            8554   4568888766541      22 36789999998 999998888765

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=99.93  E-value=1.4e-25  Score=226.04  Aligned_cols=181  Identities=17%  Similarity=0.232  Sum_probs=147.7

Q ss_pred             CCCHHHHHHhcCC-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecCCCC
Q 006868          390 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP  467 (628)
Q Consensus       390 ~~p~~~l~~~lp~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~  467 (628)
                      ..||||+...+|. ...|+|||+|+| ...+.++|+|+.         ...|.+|+||.+ +++  |++|.+.+|.|.|.
T Consensus        35 ~~pGQ~v~l~~~~~~~~R~ySi~s~~-~~~~~l~~~i~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f~  102 (236)
T cd06210          35 FVPGQFVEIEIPGTDTRRSYSLANTP-NWDGRLEFLIRL---------LPGGAFSTYLETRAKV--GQRLNLRGPLGAFG  102 (236)
T ss_pred             cCCCCEEEEEcCCCccceecccCCCC-CCCCEEEEEEEE---------cCCCccchhhhhCcCC--CCEEEEecCcceee
Confidence            4689998887775 358999999998 346789999854         346899999986 999  99999999999998


Q ss_pred             CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868          468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  546 (628)
Q Consensus       468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~  546 (628)
                      ++ ...+++||||+|||||||+++++++......   .+++||||+|+.+|++|.++|+++.+.++++      +++.++
T Consensus       103 l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~  173 (236)
T cd06210         103 LRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGEP---QEARLFFGVNTEAELFYLDELKRLADSLPNL------TVRICV  173 (236)
T ss_pred             ecCCCCccEEEEccCcchhHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhhHHHHHHHHHhCCCe------EEEEEE
Confidence            87 5567999999999999999999998775433   7899999999999999999999999887888      888888


Q ss_pred             ecCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          547 SRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       547 Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ||+..    .++++++.+.+....    ...+..+|+|||+ .|.+.+++.|.+
T Consensus       174 s~~~~~~~~~~g~~~~~l~~~l~~----~~~~~~vyicGp~-~m~~~~~~~l~~  222 (236)
T cd06210         174 WRPGGEWEGYRGTVVDALREDLAS----SDAKPDIYLCGPP-GMVDAAFAAARE  222 (236)
T ss_pred             cCCCCCcCCccCcHHHHHHHhhcc----cCCCcEEEEeCCH-HHHHHHHHHHHH
Confidence            87532    456777766543211    1235789999998 999998887765

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=99.93  E-value=2.1e-25  Score=242.44  Aligned_cols=180  Identities=20%  Similarity=0.333  Sum_probs=145.3

Q ss_pred             CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCCCCCCCEEEEeCCC
Q 006868          403 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT  482 (628)
Q Consensus       403 ~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~Gt  482 (628)
                      ...|+|||+|.| .+++.++|+|+++.+....++.+.|.+|+||+++++  ||.|.+.+|.|.|.+++..+|+||||+||
T Consensus       208 ~~~R~ySias~p-~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~f~~~~~~~~ivlIAgGt  284 (409)
T PRK05464        208 PVIRAYSMANYP-EEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGA  284 (409)
T ss_pred             ceeeeeccCCCC-CCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCC--CCEEEEEccccCcEecCCCceEEEEEecc
Confidence            357999999998 456789999988766655556678999999999999  99999999999998765568999999999


Q ss_pred             ChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC------Cccch
Q 006868          483 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYV  556 (628)
Q Consensus       483 GIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yV  556 (628)
                      |||||++++++.......  ..+++||||+|+++|++|.+||+++.+.++++      ++++++|+++.      .+++|
T Consensus       285 GIaP~~sml~~~l~~~~~--~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v  356 (409)
T PRK05464        285 GMAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYVEDFDQLAAENPNF------KWHVALSDPLPEDNWTGYTGFI  356 (409)
T ss_pred             ChhHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEEEcCCCCCCCCCCcccee
Confidence            999999999987664321  26899999999999999999999998877878      78888887532      35788


Q ss_pred             hhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          557 QHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       557 qd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ++.+.+..  +.+.. ..++.+|+|||+ .|.+++.+.|.+
T Consensus       357 ~~~l~~~~--l~~~~~~~~~~vyiCGP~-~m~~av~~~L~~  394 (409)
T PRK05464        357 HNVLYENY--LKDHEAPEDCEYYMCGPP-MMNAAVIKMLKD  394 (409)
T ss_pred             CHHHHHhh--hhhcCCCCCeEEEEECCH-HHHHHHHHHHHH
Confidence            88775442  11111 136799999998 999988877755

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=99.93  E-value=1.5e-25  Score=226.63  Aligned_cols=203  Identities=21%  Similarity=0.276  Sum_probs=156.7

Q ss_pred             CCCHHHHHHhcCCC----cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE-eecC
Q 006868          390 QMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKG  464 (628)
Q Consensus       390 ~~p~~~l~~~lp~~----~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~-~~~g  464 (628)
                      ..||||+...+|..    ..|+|||+|.|  ..+.++|+|..         ...|.+|+||+++++  |+.|.+. +|.|
T Consensus        25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~--~~~~i~~~i~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gP~G   91 (241)
T cd06195          25 FQAGQFTKLGLPNDDGKLVRRAYSIASAP--YEENLEFYIIL---------VPDGPLTPRLFKLKP--GDTIYVGKKPTG   91 (241)
T ss_pred             cCCCCeEEEeccCCCCCeeeecccccCCC--CCCeEEEEEEE---------ecCCCCchHHhcCCC--CCEEEECcCCCC
Confidence            46899988777643    56999999998  34789998844         356999999999999  9999999 9999


Q ss_pred             CCCCC-C-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhc-CCCcccCCCCc
Q 006868          465 SLPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGG  541 (628)
Q Consensus       465 ~F~lp-~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~-~g~l~~~~~~~  541 (628)
                      .|.++ . ...++||||+|||||||++++++.......   .+++||||+|+++|++|.+||+++.+. ++++      +
T Consensus        92 ~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~  162 (241)
T cd06195          92 FLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERF---DKIVLVHGVRYAEELAYQDEIEALAKQYNGKF------R  162 (241)
T ss_pred             ceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCCC---CcEEEEEccCCHHHhhhHHHHHHHHhhcCCCE------E
Confidence            99887 4 468999999999999999999998754433   789999999999999999999999876 4567      7


Q ss_pred             EEEEEecCCCC---ccchhhhHHH-cHHHHHHH--HhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006868          542 FYVAFSRKQPQ---KVYVQHKMLE-QSQRIWNL--LLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA  615 (628)
Q Consensus       542 ~~~a~Sr~~~~---k~yVqd~l~~-~~~~v~~~--l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~  615 (628)
                      +..++||++..   ++|+++.+.. ........  ..+++.||+|||+ .|.+++.+.|.+..     +..+.       
T Consensus       163 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~~G-----~~~~~-------  229 (241)
T cd06195         163 YVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNP-QMIDDTQELLKEKG-----FSKNH-------  229 (241)
T ss_pred             EEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCH-HHHHHHHHHHHHcC-----CCccc-------
Confidence            88889987653   6788887653 11111111  1236899999998 89999988876642     22211       


Q ss_pred             HHHcCCEEEeec
Q 006868          616 LQRAGRYHVEAW  627 (628)
Q Consensus       616 l~~~~Ry~~dvw  627 (628)
                      -.+.++++.|.|
T Consensus       230 ~~~~~~~~~E~~  241 (241)
T cd06195         230 RRKPGNITVEKY  241 (241)
T ss_pred             cCCCceEEEecC
Confidence            044577777765

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=99.93  E-value=1.8e-25  Score=237.26  Aligned_cols=178  Identities=21%  Similarity=0.327  Sum_probs=148.0

Q ss_pred             CCHHHHHHhcCCCc-ccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCCC
Q 006868          391 MPIDWLVQLVPPLK-TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR  468 (628)
Q Consensus       391 ~p~~~l~~~lp~~~-~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~l  468 (628)
                      .||||+...+|... .|+|||+|+| .+.+.++|+|+.         ...|.+|+||. .+++  |+.|.+.+|.|.|.+
T Consensus       138 ~pGQ~v~l~~~~~~~~R~ySias~p-~~~~~l~~~ik~---------~~~G~~s~~L~~~l~~--G~~v~i~gP~G~f~l  205 (340)
T PRK11872        138 LPGQYARLQIPGTDDWRSYSFANRP-NATNQLQFLIRL---------LPDGVMSNYLRERCQV--GDEILFEAPLGAFYL  205 (340)
T ss_pred             CCCCEEEEEeCCCCceeecccCCCC-CCCCeEEEEEEE---------CCCCcchhhHhhCCCC--CCEEEEEcCcceeEe
Confidence            58999887787654 7999999998 456889999954         35799999996 6999  999999999999988


Q ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006868          469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR  548 (628)
Q Consensus       469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr  548 (628)
                      +...+|+||||+|||||||+++++++......   .+++||||+|+++|++|.+||++|.+.++++      +++.+.|+
T Consensus       206 ~~~~~~~vliagGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~dl~~~~el~~~~~~~~~~------~~~~~~s~  276 (340)
T PRK11872        206 REVERPLVFVAGGTGLSAFLGMLDELAEQGCS---PPVHLYYGVRHAADLCELQRLAAYAERLPNF------RYHPVVSK  276 (340)
T ss_pred             CCCCCcEEEEeCCcCccHHHHHHHHHHHcCCC---CcEEEEEecCChHHhccHHHHHHHHHHCCCc------EEEEEEeC
Confidence            74458999999999999999999998775433   6899999999999999999999999877888      88888886


Q ss_pred             CCC----CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          549 KQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       549 ~~~----~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      .++    .++||++.+.+.      .+. .+..+|+|||+ .|.+.+.+.|.+
T Consensus       277 ~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp~-~mv~~~~~~L~~  322 (340)
T PRK11872        277 ASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGPP-PMVEAVKQWLDE  322 (340)
T ss_pred             CCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCCH-HHHHHHHHHHHH
Confidence            543    468888876543      122 25689999998 999988887755

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=99.92  E-value=2.9e-25  Score=221.94  Aligned_cols=179  Identities=21%  Similarity=0.275  Sum_probs=147.6

Q ss_pred             CCHHHHHHhcCCCc--ccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecCCCC
Q 006868          391 MPIDWLVQLVPPLK--TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP  467 (628)
Q Consensus       391 ~p~~~l~~~lp~~~--~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~  467 (628)
                      .|||++...+|...  .|+|||+|.| ...+.++|+|+.         ...|.+|+||.+ +++  |+.|.+.+|.|.|.
T Consensus        25 ~pGq~i~l~~~~~~~~~r~ysi~s~~-~~~~~~~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~   92 (224)
T cd06187          25 WAGQYVNVTVPGRPRTWRAYSPANPP-NEDGEIEFHVRA---------VPGGRVSNALHDELKV--GDRVRLSGPYGTFY   92 (224)
T ss_pred             CCCceEEEEcCCCCCcceeccccCCC-CCCCEEEEEEEe---------CCCCcchHHHhhcCcc--CCEEEEeCCccceE
Confidence            58999888887543  7999999998 345789999943         346999999986 999  99999999999998


Q ss_pred             CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868          468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  546 (628)
Q Consensus       468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~  546 (628)
                      ++ ....++||||+|||||||+++++++......   .+++|+|++|+.+|++|.++|+++.+.++++      ++..++
T Consensus        93 ~~~~~~~~~lliagG~GI~p~~sll~~~~~~~~~---~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~  163 (224)
T cd06187          93 LRRDHDRPVLCIAGGTGLAPLRAIVEDALRRGEP---RPVHLFFGARTERDLYDLEGLLALAARHPWL------RVVPVV  163 (224)
T ss_pred             ecCCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhhcChHHHHHHHHhCCCe------EEEEEe
Confidence            87 5468999999999999999999999876533   7899999999999999999999998875666      777788


Q ss_pred             ecCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          547 SRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       547 Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ++++.    .++|+++.+.+....     .+++.+|+|||+ .|.+++++.|++
T Consensus       164 ~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~v~vcGp~-~~~~~v~~~l~~  211 (224)
T cd06187         164 SHEEGAWTGRRGLVTDVVGRDGPD-----WADHDIYICGPP-AMVDATVDALLA  211 (224)
T ss_pred             CCCCCccCCCcccHHHHHHHhccc-----cccCEEEEECCH-HHHHHHHHHHHH
Confidence            87543    467888877654211     137899999998 999998888765

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=99.92  E-value=2.6e-25  Score=241.52  Aligned_cols=177  Identities=19%  Similarity=0.250  Sum_probs=142.2

Q ss_pred             CCHHHHHHhcC--C--C-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecC
Q 006868          391 MPIDWLVQLVP--P--L-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG  464 (628)
Q Consensus       391 ~p~~~l~~~lp--~--~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g  464 (628)
                      .||||+...++  .  . .+|+|||+|+|  .++.++|+|+.         ...|.+|+||.+ +++  |++|.+.+|.|
T Consensus       186 ~pGQ~v~l~~~~~~~~~~~~R~ySias~p--~~~~l~~~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~G  252 (399)
T PRK13289        186 KPGQYLGVRLDPEGEEYQEIRQYSLSDAP--NGKYYRISVKR---------EAGGKVSNYLHDHVNV--GDVLELAAPAG  252 (399)
T ss_pred             CCCCeEEEEEecCCccccceeEEEeeeCC--CCCeEEEEEEE---------CCCCeehHHHhhcCCC--CCEEEEEcCcc
Confidence            48888877764  2  1 35999999998  35789999843         456999999975 999  99999999999


Q ss_pred             CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEE
Q 006868          465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY  543 (628)
Q Consensus       465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~  543 (628)
                      .|.++ ...+|+||||+|||||||+++++++......   .+++||||+|+.+|++|++||+++.+.++++      +++
T Consensus       253 ~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~eL~~l~~~~~~~------~~~  323 (399)
T PRK13289        253 DFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQPK---RPVHFIHAARNGGVHAFRDEVEALAARHPNL------KAH  323 (399)
T ss_pred             ccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCCC---CCEEEEEEeCChhhchHHHHHHHHHHhCCCc------EEE
Confidence            99988 5678999999999999999999998765543   7999999999999999999999999886677      889


Q ss_pred             EEEecCCCC---------ccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          544 VAFSRKQPQ---------KVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       544 ~a~Sr~~~~---------k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      .++|++...         .++++.      +.+.+.+. .++.+|||||+ .|.+++.+.|.+
T Consensus       324 ~~~s~~~~~~~~~~~~~~~g~i~~------~~l~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~  379 (399)
T PRK13289        324 TWYREPTEQDRAGEDFDSEGLMDL------EWLEAWLPDPDADFYFCGPV-PFMQFVAKQLLE  379 (399)
T ss_pred             EEECCCccccccCCcccccCcccH------HHHHhhCCCCCCEEEEECCH-HHHHHHHHHHHH
Confidence            999975431         133332      22333343 37899999998 999998877765

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=99.92  E-value=3.6e-25  Score=240.25  Aligned_cols=180  Identities=22%  Similarity=0.353  Sum_probs=142.6

Q ss_pred             CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCCCCCCCEEEEeCCC
Q 006868          403 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT  482 (628)
Q Consensus       403 ~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~Gt  482 (628)
                      ...|+|||+|+| ...+.++|+|+++.+.....+.+.|.+|+||.++++  ||.|.+.+|.|.|.+.+..+|+||||+||
T Consensus       204 ~~~R~ySias~p-~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~lvlIAgGt  280 (405)
T TIGR01941       204 ETVRAYSMANYP-AEKGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGA  280 (405)
T ss_pred             ccceeecCCCCC-CCCCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCC--cCEEEEEeccCCCeecCCCCCEEEEecCc
Confidence            356999999998 456899999987644333234567999999999999  99999999999998775568999999999


Q ss_pred             ChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC------Cccch
Q 006868          483 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYV  556 (628)
Q Consensus       483 GIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yV  556 (628)
                      |||||++|+++.......  ..+++||||+|+++|++|.+||+++.+.++++      ++++++|+++.      .+++|
T Consensus       281 GIaP~lsmi~~~l~~~~~--~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v  352 (405)
T TIGR01941       281 GMAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYQEDFDQLEAENPNF------VWHVALSDPQPEDNWTGYTGFI  352 (405)
T ss_pred             CcchHHHHHHHHHhcCCC--CCeEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEEEeCCCCccCCCCCcccee
Confidence            999999999987654221  26899999999999999999999998876877      78888887532      35788


Q ss_pred             hhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          557 QHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       557 qd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ++.+.+..  +.+.. ..++.+|+|||+ .|.+.+.+.|.+
T Consensus       353 ~~~l~~~~--l~~~~~~~~~~vylCGP~-~m~~av~~~L~~  390 (405)
T TIGR01941       353 HNVLYENY--LKDHDAPEDCEFYMCGPP-MMNAAVIKMLED  390 (405)
T ss_pred             CHHHHHhh--hcccCCCCCeEEEEeCCH-HHHHHHHHHHHH
Confidence            87765431  11111 136789999998 999988877755

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=99.92  E-value=3.3e-25  Score=222.85  Aligned_cols=180  Identities=24%  Similarity=0.394  Sum_probs=146.9

Q ss_pred             CCCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecCCCC
Q 006868          390 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP  467 (628)
Q Consensus       390 ~~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~  467 (628)
                      ..|||++...+|.. ..|+|||+|.| ...+.++|+|+.         ...|.+|+||.+ +++  |++|.+.+|.|.|.
T Consensus        30 ~~pGQ~v~l~~~~~~~~r~ySi~s~~-~~~~~l~l~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~   97 (232)
T cd06212          30 FFAGQYVDITVPGTEETRSFSMANTP-ADPGRLEFIIKK---------YPGGLFSSFLDDGLAV--GDPVTVTGPYGTCT   97 (232)
T ss_pred             cCCCCeEEEEcCCCCcccccccCCCC-CCCCEEEEEEEE---------CCCCchhhHHhhcCCC--CCEEEEEcCcccce
Confidence            36999988877754 68999999998 345889999944         356999999985 999  99999999999998


Q ss_pred             CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868          468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  546 (628)
Q Consensus       468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~  546 (628)
                      ++ ....++||||+|||||||++++++....+..   .+++|+||+|+.+|++|.+||+++.+.+.++      +++.++
T Consensus        98 ~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~  168 (232)
T cd06212          98 LRESRDRPIVLIGGGSGMAPLLSLLRDMAASGSD---RPVRFFYGARTARDLFYLEEIAALGEKIPDF------TFIPAL  168 (232)
T ss_pred             ecCCCCCcEEEEecCcchhHHHHHHHHHHhcCCC---CcEEEEEeccchHHhccHHHHHHHHHhCCCE------EEEEEE
Confidence            87 5568999999999999999999999876543   6899999999999999999999998875777      788888


Q ss_pred             ecCCC------CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          547 SRKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       547 Sr~~~------~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      |++..      ..+++++.+.+....     .++..+|+|||+ .|.+.+.+.|.+
T Consensus       169 s~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~v~~CGp~-~~~~~v~~~l~~  218 (232)
T cd06212         169 SESPDDEGWSGETGLVTEVVQRNEAT-----LAGCDVYLCGPP-PMIDAALPVLEM  218 (232)
T ss_pred             CCCCCCCCCcCCcccHHHHHHhhccC-----ccCCEEEEECCH-HHHHHHHHHHHH
Confidence            88542      356777765443211     136889999998 999888877764

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=99.92  E-value=3.2e-25  Score=230.00  Aligned_cols=179  Identities=18%  Similarity=0.232  Sum_probs=143.1

Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-CCC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR  468 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l  468 (628)
                      ..||||+...+|....|+|||+|+| ..++.++|+|+           +.|.+|+||+++++  |++|.+.+|.|. |.+
T Consensus        38 ~~pGQ~v~l~~~~~~~~pySias~p-~~~~~l~l~Ik-----------~~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~  103 (289)
T PRK08345         38 FKPGQFVQVTIPGVGEVPISICSSP-TRKGFFELCIR-----------RAGRVTTVIHRLKE--GDIVGVRGPYGNGFPV  103 (289)
T ss_pred             cCCCCEEEEEcCCCCceeeEecCCC-CCCCEEEEEEE-----------eCChHHHHHHhCCC--CCEEEEeCCCCCCCCc
Confidence            3689999888887667999999998 45678999994           24899999999999  999999999997 666


Q ss_pred             C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868          469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  547 (628)
Q Consensus       469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S  547 (628)
                      + ...+|+||||+|||||||+++++++......  ..+++|+||+|+.+|++|++||++|.+.++++      +++.++|
T Consensus       104 ~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~--~~~v~l~~~~r~~~d~~~~deL~~l~~~~~~~------~~~~~~s  175 (289)
T PRK08345        104 DEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWK--YGNITLIYGAKYYEDLLFYDELIKDLAEAENV------KIIQSVT  175 (289)
T ss_pred             ccccCceEEEEecccchhHHHHHHHHHHhcCCC--CCcEEEEEecCCHHHhhHHHHHHHHHhcCCCE------EEEEEec
Confidence            5 4457999999999999999999998765421  27899999999999999999999998766777      7888899


Q ss_pred             cCCCC---------------ccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          548 RKQPQ---------------KVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       548 r~~~~---------------k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                      |++..               +++|++.+.+..      . ..+..+|+|||+ .|.+.+.+.|.+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------~~~~~~~vyiCGP~-~m~~~v~~~L~~~  234 (289)
T PRK08345        176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREAN------TDPKNTYAAICGPP-VMYKFVFKELINR  234 (289)
T ss_pred             CCCCCcCccccccccccccccCchhhhhhhcC------CCccccEEEEECCH-HHHHHHHHHHHHc
Confidence            85432               234444333221      1 135789999998 9999998887653

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=99.92  E-value=7.1e-25  Score=219.76  Aligned_cols=177  Identities=20%  Similarity=0.329  Sum_probs=144.3

Q ss_pred             CCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHh-hCcCCCCCceEEEEeecCCCCC
Q 006868          391 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYIPAWFQKGSLPR  468 (628)
Q Consensus       391 ~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v~i~~~~g~F~l  468 (628)
                      .||||+...+|.. ..|+|||+|+| ...+.++|+|+.         ...|.+|+|| ..+++  |++|.+.+|.|.|.+
T Consensus        29 ~pGQ~~~l~~~~~~~~r~ysi~s~~-~~~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~   96 (227)
T cd06213          29 KAGQYAELTLPGLPAARSYSFANAP-QGDGQLSFHIRK---------VPGGAFSGWLFGADRT--GERLTVRGPFGDFWL   96 (227)
T ss_pred             CCCCEEEEEeCCCCcccccccCCCC-CCCCEEEEEEEE---------CCCCcchHHHHhcCCC--CCEEEEeCCCcceEe
Confidence            4899988888765 48999999998 346889999843         3569999999 46999  999999999999988


Q ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcC-CCcccCCCCcEEEEEe
Q 006868          469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGFYVAFS  547 (628)
Q Consensus       469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~~~~~~a~S  547 (628)
                      ++...++||||+|||||||+++++++......   .++++|||+|+++|.+|.+||+++.+.+ +++      +++.++|
T Consensus        97 ~~~~~~~lliagG~GiaP~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~~~~~s  167 (227)
T cd06213          97 RPGDAPILCIAGGSGLAPILAILEQARAAGTK---RDVTLLFGARTQRDLYALDEIAAIAARWRGRF------RFIPVLS  167 (227)
T ss_pred             CCCCCcEEEEecccchhHHHHHHHHHHhcCCC---CcEEEEEeeCCHHHhccHHHHHHHHHhccCCe------EEEEEec
Confidence            74457999999999999999999999876533   6899999999999999999999998753 455      7788888


Q ss_pred             cCCC------CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          548 RKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       548 r~~~------~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ++..      .+++|++.+.+.       +..+..+|+|||+ .|.+++++.|.+
T Consensus       168 ~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp~-~~~~~~~~~l~~  214 (227)
T cd06213         168 EEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGPP-AMIDAAIAVLRA  214 (227)
T ss_pred             CCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECCH-HHHHHHHHHHHH
Confidence            7642      245777765543       2357899999998 999988877765

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=99.92  E-value=5.5e-25  Score=233.00  Aligned_cols=182  Identities=15%  Similarity=0.248  Sum_probs=143.8

Q ss_pred             CCCHHHHHHhcCCC--cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCC
Q 006868          390 QMPIDWLVQLVPPL--KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL  466 (628)
Q Consensus       390 ~~p~~~l~~~lp~~--~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F  466 (628)
                      ..||||+...+|.-  ..|+|||+|+| ...+.++|+|+         +...|.+|+||. ++++  |++|.+.+|.|.|
T Consensus        37 f~pGQfv~l~~~~~~~~~R~ySias~p-~~~~~l~i~Vk---------~~~~G~~S~~L~~~l~~--Gd~v~v~gP~G~f  104 (332)
T PRK10684         37 YRAGQYALVSIRNSAETLRAYTLSSTP-GVSEFITLTVR---------RIDDGVGSQWLTRDVKR--GDYLWLSDAMGEF  104 (332)
T ss_pred             cCCCCEEEEEecCCCEeeeeecccCCC-CCCCcEEEEEE---------EcCCCcchhHHHhcCCC--CCEEEEeCCcccc
Confidence            35999988777642  46999999998 45578999994         346799999996 7999  9999999999999


Q ss_pred             CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868          467 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  545 (628)
Q Consensus       467 ~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a  545 (628)
                      .++ ....|+||||+|||||||++|+++.......   .+++|+||+|+.+|++|.+||+++.+.++++      ++.+.
T Consensus       105 ~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~~---~~v~l~y~~r~~~~~~~~~el~~l~~~~~~~------~~~~~  175 (332)
T PRK10684        105 TCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQ---ADVQVIFNVRTPQDVIFADEWRQLKQRYPQL------NLTLV  175 (332)
T ss_pred             ccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CCEEEEEeCCChHHhhhHHHHHHHHHHCCCe------EEEEE
Confidence            987 5668999999999999999999998765433   7899999999999999999999999876776      67777


Q ss_pred             EecCCCCccchhhhHHHcHHHHHHHHhC--CCEEEEeCCCCCCHHHHHHHHHH
Q 006868          546 FSRKQPQKVYVQHKMLEQSQRIWNLLLS--KASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       546 ~Sr~~~~k~yVqd~l~~~~~~v~~~l~~--~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      .+++. .++|++..+.+.  .+.+.+.+  +..+|+|||+ .|++.+.+.|.+
T Consensus       176 ~~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP~-~m~~~v~~~l~~  224 (332)
T PRK10684        176 AENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGPA-PYMDWVEQEVKA  224 (332)
T ss_pred             eccCC-CCCccccccCHH--HHHHhcccccCCEEEEECCH-HHHHHHHHHHHH
Confidence            66543 244444444321  12222222  6799999998 999988887765

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=99.92  E-value=7e-25  Score=220.38  Aligned_cols=178  Identities=17%  Similarity=0.308  Sum_probs=141.7

Q ss_pred             CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCC
Q 006868          390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS  465 (628)
Q Consensus       390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~  465 (628)
                      ..||||+...++.   ..+|+|||+|.|.  .+.++|+|+.         ...|.+|+||. ++++  |++|.+.+|.|.
T Consensus        28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~   94 (231)
T cd06191          28 FRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKR---------VPGGRVSNYLREHIQP--GMTVEVMGPQGH   94 (231)
T ss_pred             CCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEE---------CCCCccchHHHhcCCC--CCEEEEeCCccc
Confidence            3689998777642   2479999999983  6889999954         34599999997 6999  999999999999


Q ss_pred             CCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006868          466 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  544 (628)
Q Consensus       466 F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~  544 (628)
                      |.++ ....++||||+||||||+++++++.......   .+++||||+|+++|++|.+||+++.+.++++      ++.+
T Consensus        95 f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~  165 (231)
T cd06191          95 FVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAPE---SDFTLIHSARTPADMIFAQELRELADKPQRL------RLLC  165 (231)
T ss_pred             eEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEE
Confidence            9887 5668999999999999999999998765433   7899999999999999999999998865777      8899


Q ss_pred             EEecCCCC------ccchhhhHHHcHHHHHHHHhC--CCEEEEeCCCCCCHHHHHHHHHH
Q 006868          545 AFSRKQPQ------KVYVQHKMLEQSQRIWNLLLS--KASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       545 a~Sr~~~~------k~yVqd~l~~~~~~v~~~l~~--~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ++||++..      ++++++.+.+      .++..  ++.+|+|||+ .|.+++++.|.+
T Consensus       166 ~~s~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~vyicGp~-~mv~~~~~~l~~  218 (231)
T cd06191         166 IFTRETLDSDLLHGRIDGEQSLGA------ALIPDRLEREAFICGPA-GMMDAVETALKE  218 (231)
T ss_pred             EECCCCCCccccCCcccccHHHHH------HhCccccCCeEEEECCH-HHHHHHHHHHHH
Confidence            99986532      2233322221      12222  5799999998 999888877754

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=99.92  E-value=1.7e-24  Score=216.10  Aligned_cols=180  Identities=22%  Similarity=0.265  Sum_probs=142.9

Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecCCCCC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR  468 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~l  468 (628)
                      ..||||+...+|....|+|||+|+| ...+.++|+|+.         ...|.+|.||.+ +++  |+.|.+.+|.|.|.+
T Consensus        24 ~~pGQ~v~l~~~~~~~r~ySi~s~~-~~~~~~~~~i~~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~~~~   91 (222)
T cd06194          24 YLPGQYVNLRRAGGLARSYSPTSLP-DGDNELEFHIRR---------KPNGAFSGWLGEEARP--GHALRLQGPFGQAFY   91 (222)
T ss_pred             cCCCCEEEEEcCCCCceeeecCCCC-CCCCEEEEEEEe---------ccCCccchHHHhccCC--CCEEEEecCcCCeec
Confidence            3589999888887788999999998 344789999843         356999999986 799  999999999998765


Q ss_pred             C--CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868          469 P--PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  546 (628)
Q Consensus       469 p--~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~  546 (628)
                      .  ....++||||+|||||||+++++++......   ++++||||+|+.+|++|.+||+++.+.++++      +++.+.
T Consensus        92 ~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~  162 (222)
T cd06194          92 RPEYGEGPLLLVGAGTGLAPLWGIARAALRQGHQ---GEIRLVHGARDPDDLYLHPALLWLAREHPNF------RYIPCV  162 (222)
T ss_pred             cCCCCCCCEEEEecCcchhhHHHHHHHHHhcCCC---ccEEEEEecCChhhccCHHHHHHHHHHCCCe------EEEEEE
Confidence            4  4567999999999999999999998765543   7899999999999999999999999865777      788888


Q ss_pred             ecCCCCc--cchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          547 SRKQPQK--VYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       547 Sr~~~~k--~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ++++...  .++.++. +.   +. ...+++.+|||||+ .|.+++++.|.+
T Consensus       163 ~~~~~~~~~~~~~~~~-~~---~~-~~~~~~~vyicGp~-~m~~~~~~~L~~  208 (222)
T cd06194         163 SEGSQGDPRVRAGRIA-AH---LP-PLTRDDVVYLCGAP-SMVNAVRRRAFL  208 (222)
T ss_pred             ccCCCCCcccccchhh-hh---hc-cccCCCEEEEeCCH-HHHHHHHHHHHH
Confidence            8865432  1222211 11   11 12347899999998 999999888765

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>PRK05713 hypothetical protein; Provisional

Probab=99.91  E-value=9.6e-25  Score=229.10  Aligned_cols=173  Identities=18%  Similarity=0.185  Sum_probs=139.2

Q ss_pred             CCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecC-CCCCC
Q 006868          391 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPRP  469 (628)
Q Consensus       391 ~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-~F~lp  469 (628)
                      .||||+...++....|+|||+|.| ...+.++|+|+.         .+.|..|+||.++++  |++|.+.+|.| .|.++
T Consensus       120 ~~GQfv~l~~~~~~~R~ySias~p-~~~~~l~~~I~~---------~~~G~~s~~l~~l~~--Gd~v~l~~p~gg~~~~~  187 (312)
T PRK05713        120 RAGQHLVLWTAGGVARPYSLASLP-GEDPFLEFHIDC---------SRPGAFCDAARQLQV--GDLLRLGELRGGALHYD  187 (312)
T ss_pred             CCCCEEEEecCCCcccccccCcCC-CCCCeEEEEEEE---------cCCCccchhhhcCCC--CCEEEEccCCCCceEec
Confidence            589998777776678999999998 456789999943         467999999999999  99999999986 56555


Q ss_pred             -C-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868          470 -P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  547 (628)
Q Consensus       470 -~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S  547 (628)
                       + ..+|+||||+|||||||+|++++....+..   .+++|+||+|+.+|++|.+||++|.+.++++      ++..+.+
T Consensus       188 ~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~~  258 (312)
T PRK05713        188 PDWQERPLWLLAAGTGLAPLWGILREALRQGHQ---GPIRLLHLARDSAGHYLAEPLAALAGRHPQL------SVELVTA  258 (312)
T ss_pred             CCCCCCcEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEEcCchHHhhhHHHHHHHHHHCCCc------EEEEEEC
Confidence             4 568999999999999999999998776543   7899999999999999999999999876777      6776665


Q ss_pred             cCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          548 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       548 r~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      +      ++++.+.+..     ....+..+|+|||+ .|.+.+.+.|.+
T Consensus       259 ~------~~~~~l~~~~-----~~~~~~~vyiCGp~-~mv~~~~~~L~~  295 (312)
T PRK05713        259 A------QLPAALAELR-----LVSRQTMALLCGSP-ASVERFARRLYL  295 (312)
T ss_pred             c------chhhhhhhcc-----CCCCCeEEEEeCCH-HHHHHHHHHHHH
Confidence            3      3444433211     01235789999998 999999888864

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=99.91  E-value=3.5e-24  Score=217.53  Aligned_cols=178  Identities=20%  Similarity=0.315  Sum_probs=141.9

Q ss_pred             CCCHHHHHHhcC--C---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeec
Q 006868          390 QMPIDWLVQLVP--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK  463 (628)
Q Consensus       390 ~~p~~~l~~~lp--~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~  463 (628)
                      ..|||++...++  .   ...|+|||+|.|  ..+.++|+|+.         ...|.+|+||.+ +++  |++|.+.+|.
T Consensus        37 ~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~--~~~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~  103 (247)
T cd06184          37 FLPGQYLSVRVKLPGLGYRQIRQYSLSDAP--NGDYYRISVKR---------EPGGLVSNYLHDNVKV--GDVLEVSAPA  103 (247)
T ss_pred             CCCCCEEEEEEecCCCCCceeEEeEeccCC--CCCeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCC
Confidence            358898877764  2   367999999998  34588888843         346999999986 999  9999999999


Q ss_pred             CCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcE
Q 006868          464 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGF  542 (628)
Q Consensus       464 g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~  542 (628)
                      |.|.++ ...+++||||+|||||||+++++++......   .+++||||+|++++.+|.++|+++.+.++++      ++
T Consensus       104 G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~  174 (247)
T cd06184         104 GDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGPG---RPVTFIHAARNSAVHAFRDELEELAARLPNL------KL  174 (247)
T ss_pred             CceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCCC---CcEEEEEEcCchhhHHHHHHHHHHHhhCCCe------EE
Confidence            999988 4678999999999999999999999875433   7899999999999999999999998875677      88


Q ss_pred             EEEEecCCCC--------ccchhhhHHHcHHHHHH-HHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          543 YVAFSRKQPQ--------KVYVQHKMLEQSQRIWN-LLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       543 ~~a~Sr~~~~--------k~yVqd~l~~~~~~v~~-~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ++++|+....        .++++..      .+.+ +...+..+|+|||+ .|++++++.|.+
T Consensus       175 ~~~~s~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~v~icGp~-~m~~~v~~~l~~  230 (247)
T cd06184         175 HVFYSEPEAGDREEDYDHAGRIDLA------LLRELLLPADADFYLCGPV-PFMQAVREGLKA  230 (247)
T ss_pred             EEEECCCCcccccccccccCccCHH------HHhhccCCCCCEEEEECCH-HHHHHHHHHHHH
Confidence            8999986432        2344321      1222 12348899999998 999988877765

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=99.91  E-value=4.7e-24  Score=217.28  Aligned_cols=179  Identities=20%  Similarity=0.285  Sum_probs=146.3

Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-CCC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR  468 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l  468 (628)
                      ..||||+...+|....|+|||+|+| ..++.++|+|+           +.|..|+||.++++  |++|.+.+|.|. |.+
T Consensus        28 ~~pGQ~i~l~~~~~~~~pySi~s~~-~~~~~l~~~Ik-----------~~G~~S~~L~~l~~--G~~v~i~gP~G~~f~~   93 (253)
T cd06221          28 FKPGQFVMLSLPGVGEAPISISSDP-TRRGPLELTIR-----------RVGRVTEALHELKP--GDTVGLRGPFGNGFPV   93 (253)
T ss_pred             cCCCCEEEEEcCCCCccceEecCCC-CCCCeEEEEEE-----------eCChhhHHHHcCCC--CCEEEEECCcCCCccc
Confidence            4689999888887667999999998 34688999984           24889999999999  999999999998 666


Q ss_pred             CC-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868          469 PP-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  547 (628)
Q Consensus       469 p~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S  547 (628)
                      +. ..+|+||||+||||||++++++++......  ..+++|||+.|+.+|++|+++|+++.+. .++      ++.+++|
T Consensus        94 ~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~--~~~i~Li~~~r~~~~~~~~~~L~~l~~~-~~~------~~~~~~s  164 (253)
T cd06221          94 EEMKGKDLLLVAGGLGLAPLRSLINYILDNRED--YGKVTLLYGARTPEDLLFKEELKEWAKR-SDV------EVILTVD  164 (253)
T ss_pred             ccccCCeEEEEccccchhHHHHHHHHHHhcccc--CCcEEEEEecCChHHcchHHHHHHHHhc-CCe------EEEEEeC
Confidence            53 678999999999999999999999875321  2789999999999999999999999988 777      7888888


Q ss_pred             cCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          548 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       548 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                      ++.+    ..++|++.+.+....     ..+..||+|||+ .|.+++.+.|.+.
T Consensus       165 ~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyicGp~-~mv~~~~~~L~~~  212 (253)
T cd06221         165 RAEEGWTGNVGLVTDLLPELTLD-----PDNTVAIVCGPP-IMMRFVAKELLKL  212 (253)
T ss_pred             CCCCCccCCccccchhHHhcCCC-----cCCcEEEEECCH-HHHHHHHHHHHHc
Confidence            7543    356777766543211     147899999998 9999888888653

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.91  E-value=5.3e-24  Score=213.83  Aligned_cols=179  Identities=22%  Similarity=0.329  Sum_probs=141.3

Q ss_pred             CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCC
Q 006868          390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS  465 (628)
Q Consensus       390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~  465 (628)
                      ..|||++...+|.   ...|+|||+|.| .+.+.++|+|+.         ...|.+|.||. ++++  |+.|.+.+|.|.
T Consensus        28 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~-~~~~~l~~~vk~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~   95 (231)
T cd06215          28 YKPGQFLTLELEIDGETVYRAYTLSSSP-SRPDSLSITVKR---------VPGGLVSNWLHDNLKV--GDELWASGPAGE   95 (231)
T ss_pred             cCCCCeEEEEEecCCCeEEEeeecccCC-CCCCcEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCcce
Confidence            3689998777752   247999999998 456679999844         34689999996 7999  999999999999


Q ss_pred             CCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006868          466 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  544 (628)
Q Consensus       466 F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~  544 (628)
                      |.++ ....++||||+|||||||++++++....+..   .+++||||+|+++|++|.++|+++.+.+.++      ++.+
T Consensus        96 f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~  166 (231)
T cd06215          96 FTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPD---ADIVFIHSARSPADIIFADELEELARRHPNF------RLHL  166 (231)
T ss_pred             eEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CcEEEEEecCChhhhhHHHHHHHHHHHCCCe------EEEE
Confidence            9887 4478999999999999999999998775533   6899999999999999999999999876777      7888


Q ss_pred             EEecCCC-----CccchhhhHHHcHHHHHHHHhC--CCEEEEeCCCCCCHHHHHHHHHH
Q 006868          545 AFSRKQP-----QKVYVQHKMLEQSQRIWNLLLS--KASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       545 a~Sr~~~-----~k~yVqd~l~~~~~~v~~~l~~--~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      +.++++.     ..+++...+      +.+.+.+  +..+|+|||+ .|.+.+.+.|.+
T Consensus       167 ~~~~~~~~~~~~~~g~~~~~~------l~~~~~~~~~~~v~icGp~-~m~~~~~~~l~~  218 (231)
T cd06215         167 ILEQPAPGAWGGYRGRLNAEL------LALLVPDLKERTVFVCGPA-GFMKAVKSLLAE  218 (231)
T ss_pred             EEccCCCCcccccCCcCCHHH------HHHhcCCccCCeEEEECCH-HHHHHHHHHHHH
Confidence            8887554     123443311      1222222  4789999998 999888877754

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=99.90  E-value=4.4e-24  Score=212.58  Aligned_cols=175  Identities=15%  Similarity=0.210  Sum_probs=135.5

Q ss_pred             CCCHHHHHHhcCC----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC
Q 006868          390 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS  465 (628)
Q Consensus       390 ~~p~~~l~~~lp~----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~  465 (628)
                      ..||||+...++.    ...|+|||+|+|  ..+.++|+|+++        ...|..|.+|.++++  |+.|.+.+|.|.
T Consensus        28 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~--~~~~l~~~vk~~--------~~~g~~s~~l~~l~~--G~~v~i~gP~G~   95 (218)
T cd06196          28 FTPGQATEVAIDKPGWRDEKRPFTFTSLP--EDDVLEFVIKSY--------PDHDGVTEQLGRLQP--GDTLLIEDPWGA   95 (218)
T ss_pred             CCCCCEEEEEeeCCCCCccccccccccCC--CCCeEEEEEEEc--------CCCCcHhHHHHhCCC--CCEEEEECCccc
Confidence            4689998877753    358999999998  358899999643        123677999999999  999999999999


Q ss_pred             CCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868          466 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  545 (628)
Q Consensus       466 F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a  545 (628)
                      |.++   .|+||||+|||||||+++++++...+..   .+++|+||+|+.+|++|.+||++|...          ++..+
T Consensus        96 ~~~~---~~~vlia~GtGiaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~----------~~~~~  159 (218)
T cd06196          96 IEYK---GPGVFIAGGAGITPFIAILRDLAAKGKL---EGNTLIFANKTEKDIILKDELEKMLGL----------KFINV  159 (218)
T ss_pred             eEec---CceEEEecCCCcChHHHHHHHHHhCCCC---ceEEEEEecCCHHHHhhHHHHHHhhcc----------eEEEE
Confidence            8753   5899999999999999999999875432   679999999999999999999998533          67778


Q ss_pred             EecCCCCccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHH
Q 006868          546 FSRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       546 ~Sr~~~~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      +||+... .|.+..+.+  +.+.+++.. ++.+|+|||+ .|.+++.+.|.+
T Consensus       160 ~s~~~~~-~~~~g~~~~--~~l~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~  207 (218)
T cd06196         160 VTDEKDP-GYAHGRIDK--AFLKQHVTDFNQHFYVCGPP-PMEEAINGALKE  207 (218)
T ss_pred             EcCCCCC-CeeeeEECH--HHHHHhcCCCCCEEEEECCH-HHHHHHHHHHHH
Confidence            8886542 333333321  122233333 5799999998 999998887755

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>PRK06756 flavodoxin; Provisional

Probab=99.90  E-value=3.2e-23  Score=193.77  Aligned_cols=146  Identities=26%  Similarity=0.313  Sum_probs=130.5

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC-ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS   84 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~-~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~   84 (628)
                      ||+++|+|+|+||||+++|+.|++.+.+.|+.+++.++.+.+ ..++.+++.|||++||||.|.+|+++..|++.|....
T Consensus         1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~   80 (148)
T PRK06756          1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSID   80 (148)
T ss_pred             CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCC
Confidence            579999999999999999999999999999999999987653 4577899999999999999999999999999885543


Q ss_pred             CcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868           85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus        85 ~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                           ++|+++++||+|++.|+|||.+.+.+.+.|+++|++.+.+...++..+++...+.+..|.+++.++|
T Consensus        81 -----l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p~~~d~~~~~~~~~~~~~~~  147 (148)
T PRK06756         81 -----LTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELTPEDEDVEKCLQFGAEFVKHL  147 (148)
T ss_pred             -----CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecCCCHHHHHHHHHHHHHHHHhc
Confidence                 7899999999999999999999999999999999999999999988877666777788888877654

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.90  E-value=8.9e-24  Score=214.04  Aligned_cols=178  Identities=19%  Similarity=0.320  Sum_probs=141.6

Q ss_pred             CCHHHHHHhcC--C-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCC
Q 006868          391 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL  466 (628)
Q Consensus       391 ~p~~~l~~~lp--~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F  466 (628)
                      .|||++...+|  . ..+|+|||+|.|....+.++|+|+.         ...|.+|.||. .+++  |++|.+.+|.|.|
T Consensus        47 ~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f  115 (243)
T cd06216          47 RAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKA---------QPDGLVSNWLVNHLAP--GDVVELSQPQGDF  115 (243)
T ss_pred             CCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEE---------cCCCcchhHHHhcCCC--CCEEEEECCceee
Confidence            58999877764  2 3579999999982147889999954         34589999998 4899  9999999999999


Q ss_pred             CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868          467 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  545 (628)
Q Consensus       467 ~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a  545 (628)
                      .++ +...++||||+||||||+++++++.......   .+++||||+|+.+|.+|.+||+++.+.++++      ++++.
T Consensus       116 ~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~  186 (243)
T cd06216         116 VLPDPLPPRLLLIAAGSGITPVMSMLRTLLARGPT---ADVVLLYYARTREDVIFADELRALAAQHPNL------RLHLL  186 (243)
T ss_pred             ecCCCCCCCEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEEcCChhhhHHHHHHHHHHHhCCCe------EEEEE
Confidence            988 4468999999999999999999998776432   7899999999999999999999998665777      78888


Q ss_pred             EecCCCCccchhhhHHHcHHHHHHHHh--CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          546 FSRKQPQKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       546 ~Sr~~~~k~yVqd~l~~~~~~v~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      +|++ ..++++....      +.+++.  +++.+|+|||+ .|.+++++.|++
T Consensus       187 ~s~~-~~~g~~~~~~------l~~~~~~~~~~~vyvcGp~-~m~~~~~~~l~~  231 (243)
T cd06216         187 YTRE-ELDGRLSAAH------LDAVVPDLADRQVYACGPP-GFLDAAEELLEA  231 (243)
T ss_pred             EcCC-ccCCCCCHHH------HHHhccCcccCeEEEECCH-HHHHHHHHHHHH
Confidence            8876 3345554321      112222  25799999998 999998887765

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=99.90  E-value=1.6e-23  Score=212.44  Aligned_cols=171  Identities=22%  Similarity=0.287  Sum_probs=137.2

Q ss_pred             CCCHHHHHHhcCC----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC
Q 006868          390 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS  465 (628)
Q Consensus       390 ~~p~~~l~~~lp~----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~  465 (628)
                      ..|||++...+|.    ...|+|||+|.| ...+.++|+|+.           .|.+|+||.++++  |++|.+.+|.|.
T Consensus        25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~-~~~~~l~l~v~~-----------~G~~s~~l~~l~~--Gd~v~i~gP~G~   90 (246)
T cd06218          25 AKPGQFVMLRVPDGSDPLLRRPISIHDVD-PEEGTITLLYKV-----------VGKGTRLLSELKA--GDELDVLGPLGN   90 (246)
T ss_pred             CCCCcEEEEEeCCCCCCcCCCceEeeecc-CCCCEEEEEEEE-----------ECcchHHHhcCCC--CCEEEEEecCCC
Confidence            4588888777764    468999999987 346789999853           3778999999999  999999999995


Q ss_pred             -CCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006868          466 -LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  544 (628)
Q Consensus       466 -F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~  544 (628)
                       |.+++...++||||+|||||||++++++.....     .+++|||++|+.+|.+|++||++|...           +.+
T Consensus        91 ~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~eL~~l~~~-----------~~~  154 (246)
T cd06218          91 GFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAERG-----IKVTVLLGFRSADDLFLVEEFEALGAE-----------VYV  154 (246)
T ss_pred             CcCCCCCCCcEEEEecccCHHHHHHHHHHHHhcC-----CceEEEEEccchhhhhhHHHHHhhCCc-----------EEE
Confidence             777655689999999999999999999987633     689999999999999999999988432           222


Q ss_pred             EEecCC--CCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          545 AFSRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       545 a~Sr~~--~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                       ++++.  ..++||++.+.+....     ..+..||+|||+ .|.+++++.|.+.
T Consensus       155 -~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp~-~mv~~~~~~L~~~  202 (246)
T cd06218         155 -ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGPE-PMLKAVAELAAER  202 (246)
T ss_pred             -EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECCH-HHHHHHHHHHHhc
Confidence             23332  2467899877765432     147899999998 9999999888763

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=99.89  E-value=1.6e-23  Score=223.65  Aligned_cols=184  Identities=17%  Similarity=0.287  Sum_probs=140.0

Q ss_pred             CCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCC
Q 006868          391 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL  466 (628)
Q Consensus       391 ~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F  466 (628)
                      .||||+...+|.   ...|+|||+|+|  .++.++|+|+.         ...|.+|+||. ++++  |++|.+.+|.|.|
T Consensus        34 ~pGQ~v~l~~~~~g~~~~R~ySi~s~p--~~~~l~i~vk~---------~~~G~~S~~l~~~l~~--Gd~v~v~gP~G~f  100 (352)
T TIGR02160        34 APGQHLTLRREVDGEELRRSYSICSAP--APGEIRVAVKK---------IPGGLFSTWANDEIRP--GDTLEVMAPQGLF  100 (352)
T ss_pred             CCCCeEEEEEecCCcEeeeeccccCCC--CCCcEEEEEEE---------eCCCcchHHHHhcCCC--CCEEEEeCCceee
Confidence            689998887742   347999999998  46789999954         35689999996 7999  9999999999999


Q ss_pred             CCC-C--CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCcE
Q 006868          467 PRP-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGF  542 (628)
Q Consensus       467 ~lp-~--~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~  542 (628)
                      .++ .  ..+++||||+|||||||++++++.......   .+++||||+|+++|++|.+||+++.+.++ ++      ++
T Consensus       101 ~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~~  171 (352)
T TIGR02160       101 TPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEPR---STFTLVYGNRRTASVMFAEELADLKDKHPQRF------HL  171 (352)
T ss_pred             ecCCCccccccEEEEeccccHhHHHHHHHHHHhcCCC---ceEEEEEEeCCHHHHHHHHHHHHHHHhCcCcE------EE
Confidence            876 3  237999999999999999999998775433   78999999999999999999999987645 36      78


Q ss_pred             EEEEecCCCCccchhhhHH-HcHHHHH-HHH--hCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          543 YVAFSRKQPQKVYVQHKML-EQSQRIW-NLL--LSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       543 ~~a~Sr~~~~k~yVqd~l~-~~~~~v~-~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                      +.++|++.....+.+..+. .....+. ++.  ..+..+|+|||+ .|++.+++.|.+.
T Consensus       172 ~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~~  229 (352)
T TIGR02160       172 AHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQ-AMVDDAEQALTGL  229 (352)
T ss_pred             EEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCH-HHHHHHHHHHHHc
Confidence            8889986532211111111 1111111 111  125789999998 9999999888763

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.89  E-value=1.9e-23  Score=210.36  Aligned_cols=179  Identities=19%  Similarity=0.294  Sum_probs=142.1

Q ss_pred             CCCHHHHHHhcC--CC--cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecC
Q 006868          390 QMPIDWLVQLVP--PL--KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG  464 (628)
Q Consensus       390 ~~p~~~l~~~lp--~~--~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g  464 (628)
                      ..||||+...+|  ..  ..|+|||+|.| .+.+.++|+|..         ...|.+|.||.+ +++  |+.|.+.+|.|
T Consensus        31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~-~~~~~l~l~v~~---------~~~G~~s~~l~~~l~~--Gd~v~i~gP~G   98 (235)
T cd06217          31 FLAGQHVDLRLTAIDGYTAQRSYSIASSP-TQRGRVELTVKR---------VPGGEVSPYLHDEVKV--GDLLEVRGPIG   98 (235)
T ss_pred             cCCcCeEEEEEecCCCceeeeeecccCCC-CCCCeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEeCCce
Confidence            358999888775  22  24999999998 455789999954         346899999974 899  99999999999


Q ss_pred             CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEE
Q 006868          465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY  543 (628)
Q Consensus       465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~  543 (628)
                      .|.++ ....+++|||+||||||+++++++.......   .+++++||+|+.+|.+|.+||.++.++++++      +++
T Consensus        99 ~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~~~~~~~~~------~~~  169 (235)
T cd06217          99 TFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGWP---VPFRLLYSARTAEDVIFRDELEQLARRHPNL------HVT  169 (235)
T ss_pred             eeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEE
Confidence            99876 4468999999999999999999998876543   7899999999999999999999999875667      788


Q ss_pred             EEEecCCC-----CccchhhhHHHcHHHHHHHH--hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          544 VAFSRKQP-----QKVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       544 ~a~Sr~~~-----~k~yVqd~l~~~~~~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      .++||+..     .++++.+.+.+.      .+  ..+..+|||||+ .|.+++.+.|.+
T Consensus       170 ~~~s~~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~v~icGp~-~m~~~v~~~l~~  222 (235)
T cd06217         170 EALTRAAPADWLGPAGRITADLIAE------LVPPLAGRRVYVCGPP-AFVEAATRLLLE  222 (235)
T ss_pred             EEeCCCCCCCcCCcCcEeCHHHHHh------hCCCccCCEEEEECCH-HHHHHHHHHHHH
Confidence            88888622     234554433221      11  236899999998 999998887765

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=99.89  E-value=2.9e-23  Score=206.51  Aligned_cols=174  Identities=18%  Similarity=0.281  Sum_probs=138.0

Q ss_pred             CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCC
Q 006868          390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS  465 (628)
Q Consensus       390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~  465 (628)
                      ..|||++...+|.   ...|+|||+|.| ...+.++|+|+.           .|.+|.+|. ++++  |+.|.+.+|.|.
T Consensus        23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~~~l~l~vk~-----------~G~~t~~l~~~l~~--G~~v~i~gP~G~   88 (216)
T cd06198          23 HRAGQFAFLRFDASGWEEPHPFTISSAP-DPDGRLRFTIKA-----------LGDYTRRLAERLKP--GTRVTVEGPYGR   88 (216)
T ss_pred             cCCCCEEEEEeCCCCCCCCCCcEEecCC-CCCCeEEEEEEe-----------CChHHHHHHHhCCC--CCEEEEECCCCC
Confidence            3689998888774   578999999998 455799999943           377899998 8999  999999999999


Q ss_pred             CCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868          466 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  545 (628)
Q Consensus       466 F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a  545 (628)
                      |.++....+++|||+||||||+++++++.......   .+++|+||+|+.+|++|.++|+++.+. .++      ++++.
T Consensus        89 ~~~~~~~~~~vlia~GtGiap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~-~~~------~~~~~  158 (216)
T cd06198          89 FTFDDRRARQIWIAGGIGITPFLALLEALAARGDA---RPVTLFYCVRDPEDAVFLDELRALAAA-AGV------VLHVI  158 (216)
T ss_pred             CcccccCceEEEEccccCHHHHHHHHHHHHhcCCC---ceEEEEEEECCHHHhhhHHHHHHHHHh-cCe------EEEEE
Confidence            99883378999999999999999999998876533   789999999999999999999999988 355      67766


Q ss_pred             EecCCCCccchhhhHHHcHHHHHHHH--hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          546 FSRKQPQKVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       546 ~Sr~~~~k~yVqd~l~~~~~~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      .++.+. .......+.       ...  ..+..+|+|||+ .|.+++++.|.+
T Consensus       159 ~~~~~~-~~~~~~~~~-------~~~~~~~~~~vyicGp~-~m~~~v~~~l~~  202 (216)
T cd06198         159 DSPSDG-RLTLEQLVR-------ALVPDLADADVWFCGPP-GMADALEKGLRA  202 (216)
T ss_pred             eCCCCc-ccchhhhhh-------hcCCCcCCCeEEEECcH-HHHHHHHHHHHH
Confidence            665432 212222210       111  237899999998 999998888765

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>PRK08221 anaerobic sulfite reductase subunit B; Provisional

Probab=99.89  E-value=4.2e-23  Score=211.34  Aligned_cols=173  Identities=19%  Similarity=0.231  Sum_probs=137.5

Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-CCC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR  468 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l  468 (628)
                      ..||||+...+|...+|+|||++.+   ++.++|+|+           +.|.+|+||.++++  |++|.+.+|.|. |.+
T Consensus        33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik-----------~~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~   96 (263)
T PRK08221         33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIR-----------RVGKVTDEIFNLKE--GDKLFLRGPYGNGFPV   96 (263)
T ss_pred             CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEE-----------eCCchhhHHHhCCC--CCEEEEECCCCCCccc
Confidence            4699999888887777999999874   578999983           23899999999999  999999999997 777


Q ss_pred             C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868          469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  547 (628)
Q Consensus       469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S  547 (628)
                      + ...+|+||||+|||||||++++++.......  ..+++||||+|+.+|++|++||++|.+. .        .+.++++
T Consensus        97 ~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~--~~~v~L~~g~r~~~~l~~~~el~~~~~~-~--------~~~~~~~  165 (263)
T PRK08221         97 DTYKGKELIVVAGGTGVAPVKGLMRYFYENPQE--IKSLDLILGFKNPDDILFKEDLKRWREK-I--------NLILTLD  165 (263)
T ss_pred             CccCCccEEEEcccccHHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHhhc-C--------cEEEEec
Confidence            6 5567999999999999999999998764321  2689999999999999999999999876 2        3445556


Q ss_pred             cCCC----CccchhhhHHHcHHHHHHHHh--CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          548 RKQP----QKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       548 r~~~----~k~yVqd~l~~~~~~v~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      +...    ..++|++.+.+.      .+.  .+..+|+|||+ .|.+++.+.|.+
T Consensus       166 ~~~~~~~~~~G~v~~~l~~~------~~~~~~~~~vylCGp~-~mv~~~~~~L~~  213 (263)
T PRK08221        166 EGEEGYRGNVGLVTKYIPEL------TLKDIDNMQVIVVGPP-IMMKFTVLEFLK  213 (263)
T ss_pred             CCCCCCccCccccChhhHhc------cCCCcCCeEEEEECCH-HHHHHHHHHHHH
Confidence            5332    346676554432      111  36789999998 999998888765

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=99.89  E-value=5.1e-23  Score=206.97  Aligned_cols=180  Identities=18%  Similarity=0.223  Sum_probs=143.1

Q ss_pred             CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCC
Q 006868          390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  466 (628)
Q Consensus       390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F  466 (628)
                      ..|||++...+|.   ...|+|||+|++ ..++.++|+|+.         ...|.+|.||+++++  |++|.+.+|.|.|
T Consensus        29 ~~pGq~v~l~~~~~~~~~~R~ysi~s~~-~~~~~~~~~v~~---------~~~G~~s~~l~~~~~--G~~v~i~gP~G~~   96 (234)
T cd06183          29 LPVGQHVELKAPDDGEQVVRPYTPISPD-DDKGYFDLLIKI---------YPGGKMSQYLHSLKP--GDTVEIRGPFGKF   96 (234)
T ss_pred             CCcccEEEEEecCCCcccccccccccCC-CcCCEEEEEEEE---------CCCCcchhHHhcCCC--CCEEEEECCccce
Confidence            3689998888875   468999999998 355689999954         346999999999999  9999999999999


Q ss_pred             CCC-CCC-CCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcC-CCcccCCCCcEE
Q 006868          467 PRP-PPS-VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGFY  543 (628)
Q Consensus       467 ~lp-~~~-~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~~~~~  543 (628)
                      .++ ... .++||||+||||||+++++++.......  ..+++|+||+|+.++.+|.+||+++.+.+ +++      ++.
T Consensus        97 ~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~--~~~i~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~  168 (234)
T cd06183          97 EYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPED--KTKISLLYANRTEEDILLREELDELAKKHPDRF------KVH  168 (234)
T ss_pred             eecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCc--CcEEEEEEecCCHHHhhhHHHHHHHHHhCcccE------EEE
Confidence            877 444 7999999999999999999998765311  27899999999999999999999998763 456      778


Q ss_pred             EEEecCCC----CccchhhhHHHcHHHHHHHHh----CCCEEEEeCCCCCCHH-HHHHHHHH
Q 006868          544 VAFSRKQP----QKVYVQHKMLEQSQRIWNLLL----SKASIYVAGSATKMPS-DVWSTFEE  596 (628)
Q Consensus       544 ~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~----~~~~iyvCG~~~~M~~-~v~~~L~~  596 (628)
                      +++++.+.    ..++|++.+.+.      .+.    .+..+|+|||. .|.+ ++++.|.+
T Consensus       169 ~~~~~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~~~~~icGp~-~~~~~~~~~~l~~  223 (234)
T cd06183         169 YVLSRPPEGWKGGVGFITKEMIKE------HLPPPPSEDTLVLVCGPP-PMIEGAVKGLLKE  223 (234)
T ss_pred             EEEcCCCcCCccccceECHHHHHH------hCCCCCCCCeEEEEECCH-HHHHHHHHHHHHH
Confidence            88887543    246666543322      222    36789999998 9998 88877754

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=99.89  E-value=8.6e-23  Score=202.21  Aligned_cols=170  Identities=15%  Similarity=0.194  Sum_probs=134.2

Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCccc-ccccHHhh-CcCCCCCceEEEEeecCCCC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLA-GLDPQQGIYIPAWFQKGSLP  467 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~-G~~S~~L~-~l~~~~G~~v~i~~~~g~F~  467 (628)
                      ..||||+...+|....|+|||+|.| .+.+.++|+|+.+         .. +.+|.||. .+++  |++|.+.+|.|.|.
T Consensus        26 ~~pGQ~~~l~~~~~~~r~ySi~s~~-~~~~~l~~~v~~~---------~~g~~~s~~l~~~~~~--Gd~v~i~gP~g~f~   93 (211)
T cd06185          26 FEPGAHIDVHLPNGLVRQYSLCGDP-ADRDRYRIAVLRE---------PASRGGSRYMHELLRV--GDELEVSAPRNLFP   93 (211)
T ss_pred             CCCCceEEEEcCCCCceeeeccCCC-CCCCEEEEEEEec---------cCCCchHHHHHhcCCC--CCEEEEcCCccCCc
Confidence            4689999888887778999999998 3458899999542         33 34799996 5899  99999999999998


Q ss_pred             CCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868          468 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  547 (628)
Q Consensus       468 lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S  547 (628)
                      ++....|+||||+||||||+++++++.....     .+++|+||+|+.+|.+|.++|+++. . .        .+.+.++
T Consensus        94 ~~~~~~~~v~ia~GtGiap~~~il~~~~~~~-----~~v~l~~~~r~~~~~~~~~~l~~~~-~-~--------~~~~~~~  158 (211)
T cd06185          94 LDEAARRHLLIAGGIGITPILSMARALAARG-----ADFELHYAGRSREDAAFLDELAALP-G-D--------RVHLHFD  158 (211)
T ss_pred             CCCCCCcEEEEeccchHhHHHHHHHHHHhCC-----CCEEEEEEeCCCcchhHHHHHhhhc-C-C--------cEEEEEC
Confidence            8744679999999999999999999987632     6899999999999999999999887 2 3        3444556


Q ss_pred             cCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          548 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       548 r~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      +.. ...++++.+...        .++..+|+|||+ .|.+++++.|.+
T Consensus       159 ~~~-~~~~~~~~~~~~--------~~~~~vyicGp~-~m~~~~~~~l~~  197 (211)
T cd06185         159 DEG-GRLDLAALLAAP--------PAGTHVYVCGPE-GMMDAVRAAAAA  197 (211)
T ss_pred             CCC-CccCHHHHhccC--------CCCCEEEEECCH-HHHHHHHHHHHH
Confidence            543 234444444321        246899999998 999998877765

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=99.89  E-value=8e-23  Score=206.67  Aligned_cols=182  Identities=21%  Similarity=0.307  Sum_probs=140.2

Q ss_pred             CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCC
Q 006868          390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS  465 (628)
Q Consensus       390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~  465 (628)
                      ..|||++...+|.   ..+|+|||+|.+  ..+.++|+|+.         ...|.+|.||. ++++  |+.|.+.+|.|.
T Consensus        33 ~~~GQ~v~l~~~~~g~~~~r~ysi~s~~--~~~~l~~~i~~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~   99 (241)
T cd06214          33 YRPGQFLTLRVPIDGEEVRRSYSICSSP--GDDELRITVKR---------VPGGRFSNWANDELKA--GDTLEVMPPAGR   99 (241)
T ss_pred             cCCCCeEEEEeecCCCeeeeeeeecCCC--CCCcEEEEEEE---------cCCCccchhHHhccCC--CCEEEEeCCccc
Confidence            3689998888862   368999999987  33489999854         35699999996 7999  999999999999


Q ss_pred             CCCC-C-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCcE
Q 006868          466 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGF  542 (628)
Q Consensus       466 F~lp-~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~  542 (628)
                      |.++ + ...++||||+|||||||+++++++......   .+++|+||+|+.+|++|.+||+++.+.++ ++      ++
T Consensus       100 ~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~  170 (241)
T cd06214         100 FTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPA---SRVTLVYGNRTEASVIFREELADLKARYPDRL------TV  170 (241)
T ss_pred             cccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhHHHHHHHHHHhCcCce------EE
Confidence            9888 4 478999999999999999999998875433   78999999999999999999999987644 55      67


Q ss_pred             EEEEecCCCC----ccchhhhHHHcHHHHHHHH--hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          543 YVAFSRKQPQ----KVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       543 ~~a~Sr~~~~----k~yVqd~l~~~~~~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ..++|+++..    .+.+...+...  .+-+++  .++..||+|||+ .|.+.+.+.|.+
T Consensus       171 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~v~icGp~-~mv~~v~~~l~~  227 (241)
T cd06214         171 IHVLSREQGDPDLLRGRLDAAKLNA--LLKNLLDATEFDEAFLCGPE-PMMDAVEAALLE  227 (241)
T ss_pred             EEEecCCCCCcccccCccCHHHHHH--hhhhhcccccCcEEEEECCH-HHHHHHHHHHHH
Confidence            7788875442    22333221111  111111  236899999998 899988877755

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=99.89  E-value=7.8e-23  Score=207.95  Aligned_cols=176  Identities=19%  Similarity=0.276  Sum_probs=137.9

Q ss_pred             CCHHHHHHhcCCC---cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCC
Q 006868          391 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL  466 (628)
Q Consensus       391 ~p~~~l~~~lp~~---~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F  466 (628)
                      -||||+...++.-   ..|.|||+|+| ..++.+.|+|++         ...|..|+||+ ++++  ||+|.+..|.|.|
T Consensus        36 ~pGQ~i~v~l~~~~~~~~R~YSl~s~p-~~~~~~~isVk~---------~~~G~~S~~Lh~~lk~--Gd~l~v~~P~G~F  103 (266)
T COG1018          36 EPGQYITVGLPNGGEPLLRAYSLSSAP-DEDSLYRISVKR---------EDGGGGSNWLHDHLKV--GDTLEVSAPAGDF  103 (266)
T ss_pred             CCCCeEEEEecCCCceeeEEEEeccCC-CCCceEEEEEEE---------eCCCcccHHHHhcCCC--CCEEEEecCCCCc
Confidence            5899998888865   79999999999 455689999844         44599999998 8999  9999999999999


Q ss_pred             CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868          467 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  545 (628)
Q Consensus       467 ~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a  545 (628)
                      .++ .+..|++|||+|||||||+||++.....+.    .++.|+|++|++++..|++| +.+.+++++..     .+...
T Consensus       104 ~l~~~~~~~~llla~G~GITP~lSml~~~~~~~~----~~v~l~h~~R~~~~~af~de-~~l~~~~~~~~-----~~~~~  173 (266)
T COG1018         104 VLDDLPERKLLLLAGGIGITPFLSMLRTLLDRGP----ADVVLVHAARTPADLAFRDE-LELAAELPNAL-----LLGLY  173 (266)
T ss_pred             cCCCCCCCcEEEEeccccHhHHHHHHHHHHHhCC----CCEEEEEecCChhhcchhhH-HHHHhhCCCCe-----eEEEE
Confidence            998 566799999999999999999999887652    57999999999999999999 88887766542     44444


Q ss_pred             EecCCCCccchh-hhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          546 FSRKQPQKVYVQ-HKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       546 ~Sr~~~~k~yVq-d~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                      +++... .+|.. .++..       .+.. +..+|+|||. +|.++|+..|.+.
T Consensus       174 ~~~~~~-~g~~~~~~l~~-------~~~~~~r~~y~CGp~-~fm~av~~~l~~~  218 (266)
T COG1018         174 TERGKL-QGRIDVSRLLS-------AAPDGGREVYLCGPG-PFMQAVRLALEAL  218 (266)
T ss_pred             EecCCc-cccccHHHHhc-------cCCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence            442221 22221 11111       2222 3899999998 9999999888664

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=99.88  E-value=6.4e-23  Score=214.83  Aligned_cols=180  Identities=17%  Similarity=0.168  Sum_probs=134.7

Q ss_pred             CCHHHHHHhcC-C-----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecC
Q 006868          391 MPIDWLVQLVP-P-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG  464 (628)
Q Consensus       391 ~p~~~l~~~lp-~-----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g  464 (628)
                      .|+|++...++ .     ...|+|||+|+| ...+.++|+|+.         ...|.+|+||.++++  ||+|.+.+|.+
T Consensus        83 ~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p-~~~~~le~~IK~---------~~~G~~S~~L~~lk~--Gd~v~v~GP~f  150 (325)
T PTZ00274         83 KPCSTLQACYKYGVQPMDQCQRFYTPVTAN-HTKGYFDIIVKR---------KKDGLMTNHLFGMHV--GDKLLFRSVTF  150 (325)
T ss_pred             CCccEEEEEEecCCCCCCEEEEeeecCCCC-CCCCeEEEEEEE---------cCCCcccHHHhcCCC--CCEEEEeCCee
Confidence            47777653333 1     247999999998 456899999944         567999999999999  99999999877


Q ss_pred             CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCC---CCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCC
Q 006868          465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS---GPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKG  539 (628)
Q Consensus       465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~---~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~  539 (628)
                      .|.++ +..+|+||||+|||||||++++++.......   ....+++|+||+|+.+|++|++||+++.+.++ ++     
T Consensus       151 ~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f-----  225 (325)
T PTZ00274        151 KIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRF-----  225 (325)
T ss_pred             ecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcE-----
Confidence            66555 4457999999999999999999988765311   01258999999999999999999999998766 46     


Q ss_pred             CcEEEEEecCCC------CccchhhhH-HHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHH
Q 006868          540 GGFYVAFSRKQP------QKVYVQHKM-LEQSQRIWNLLL-SKASIYVAGSATKMPSDVWST  593 (628)
Q Consensus       540 ~~~~~a~Sr~~~------~k~yVqd~l-~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~  593 (628)
                       +++.+.|+...      ..++|.+.+ .+....    .. .+..+|+|||+ .|.+.|...
T Consensus       226 -~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~----~~~~~~~vylCGPp-~Mm~av~~~  281 (325)
T PTZ00274        226 -KVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPA----PEEKKKIIMLCGPD-QLLNHVAGT  281 (325)
T ss_pred             -EEEEEeCCCCcccCCCCCCCccCHHHHHHhcCC----CccCCcEEEEeCCH-HHHHHhcCC
Confidence             78888886421      346666543 221100    11 13579999998 998877543

>PRK09271 flavodoxin; Provisional

Probab=99.88  E-value=5.1e-22  Score=187.95  Aligned_cols=140  Identities=21%  Similarity=0.223  Sum_probs=119.6

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc----cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA----RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ   82 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~----~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~   82 (628)
                      |+++|+|+|+|||||++|+.|++.|.+.|+.+.+.++++.+.    .++.+++.+||++||+|.|.+|+++..|+++|..
T Consensus         1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~   80 (160)
T PRK09271          1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAE   80 (160)
T ss_pred             CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHH
Confidence            579999999999999999999999999999998888876553    3455789999999999999999999999999976


Q ss_pred             ccCcccccCCcEEEEEecCCcCh--hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCC-chhhHHHHHHHHHHHH
Q 006868           83 KSLSKQWLEGVRYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSG-YEGALDPWMRSLWRRL  156 (628)
Q Consensus        83 ~~~~~~~l~~~~~aVfGlGds~y--~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g-~~~~~~~W~~~l~~~l  156 (628)
                      ..     .++++++|||+||+.|  ++||.+++.++++|+..     .+.+.++....+. +.+.+.+|.+++++.+
T Consensus        81 ~~-----~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~~~~~p~~~~d~~~~~~~~~~~~~~~  147 (160)
T PRK09271         81 TI-----GKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLKIEQMPHGERDAAAIDNWTDKVLALC  147 (160)
T ss_pred             Hh-----ccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCceeeecCCccchhHHHHHHHHHHHHHHh
Confidence            43     4678999999999999  68999999999999764     3556777654332 3588999999999888

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=99.88  E-value=1.1e-22  Score=211.79  Aligned_cols=193  Identities=17%  Similarity=0.137  Sum_probs=139.4

Q ss_pred             CCHHHHHHhcCC-------CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeec
Q 006868          391 MPIDWLVQLVPP-------LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK  463 (628)
Q Consensus       391 ~p~~~l~~~lp~-------~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~  463 (628)
                      .||||+...++.       ...|+||++|+| .+.+.++|+|+.+.-.........|.+|+||..+++  ||.|.+.+|.
T Consensus        65 ~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~-~~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~  141 (300)
T PTZ00319         65 PIGQHIVFRCDCTTPGKPETVQHSYTPISSD-DEKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKL--GDKIEMRGPV  141 (300)
T ss_pred             ccceEEEEEEEeCCCCccceEEeeeccCCCc-ccCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCC--CCEEEEEccc
Confidence            488988777652       247999999998 467889999976421111111246999999999999  9999999999


Q ss_pred             CCCCCC-C---------------CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHh
Q 006868          464 GSLPRP-P---------------PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH  527 (628)
Q Consensus       464 g~F~lp-~---------------~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~  527 (628)
                      |.|.+. +               ...|++|||+|||||||++++++.......  ..+++|+||+|+.+|.+|.++|+++
T Consensus       142 G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~~--~~~i~liyg~r~~~dl~~~~eL~~~  219 (300)
T PTZ00319        142 GKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKED--RTKVFLVYANQTEDDILLRKELDEA  219 (300)
T ss_pred             eeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHHH
Confidence            998543 1               124899999999999999999998765321  2579999999999999999999996


Q ss_pred             HhcCCCcccCCCCcEEEEEecCCC-----CccchhhhHHHcH-HHHH-H-HHhCCCEEEEeCCCCCCHH-HHHHHHHH
Q 006868          528 SLNDGVFSEAKGGGFYVAFSRKQP-----QKVYVQHKMLEQS-QRIW-N-LLLSKASIYVAGSATKMPS-DVWSTFEE  596 (628)
Q Consensus       528 ~~~~g~l~~~~~~~~~~a~Sr~~~-----~k~yVqd~l~~~~-~~v~-~-~l~~~~~iyvCG~~~~M~~-~v~~~L~~  596 (628)
                      .+. +++      +++.+.++++.     ..++|+..+.+.. ...- + ...++..+|+|||+ .|.+ .+.+.|.+
T Consensus       220 ~~~-~~~------~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~vyiCGp~-~mv~~~~~~~L~~  289 (300)
T PTZ00319        220 AKD-PRF------HVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDPQNSGIKKVMALMCGPP-PMLQMAVKPNLEK  289 (300)
T ss_pred             hhC-CCE------EEEEEECCCCCCCcccccceeCHHHHHhhcCCccccccccCCeEEEEECCH-HHHHHHHHHHHHH
Confidence            554 777      78888887432     3567776443321 1000 0 00034789999998 8887 45656644

>TIGR02911 sulfite_red_B sulfite reductase, subunit B

Probab=99.88  E-value=1e-22  Score=208.15  Aligned_cols=173  Identities=18%  Similarity=0.199  Sum_probs=135.9

Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-CCC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR  468 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l  468 (628)
                      ..|||++...+|...+|+|||+|.   +++.++|+|+           +.|.+|++|.++++  ||+|.+.+|.|. |.+
T Consensus        31 ~~pGQ~v~l~~~~~~~~pySi~~~---~~~~l~~~Vk-----------~~G~~S~~L~~l~~--Gd~v~i~gP~G~~f~~   94 (261)
T TIGR02911        31 VKPGQFFEVSLPKYGEAPISVSGI---GEGYIDLTIR-----------RVGKVTDEVFTLKE--GDNLFLRGPYGNGFDV   94 (261)
T ss_pred             CCCCcEEEEEecCCCccceecCCC---CCCeEEEEEE-----------eCchhhHHHHcCCC--CCEEEEecCCCCCccc
Confidence            469999988888777899999985   3578999983           34899999999999  999999999997 777


Q ss_pred             C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868          469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  547 (628)
Q Consensus       469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S  547 (628)
                      + ...+|++|||+|||||||+++++++......  ..+++||||+|+.+|++|.+||++|.+. .++        ..+++
T Consensus        95 ~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~--~~~v~L~~~~r~~~~~~~~~eL~~l~~~-~~~--------~~~~~  163 (261)
T TIGR02911        95 DNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKE--IKSLNLILGFKTPDDILFKEDIAEWKGN-INL--------TLTLD  163 (261)
T ss_pred             CccCCceEEEEecccCcHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHHhc-CcE--------EEEEc
Confidence            6 5568999999999999999999988664321  2689999999999999999999999876 333        33444


Q ss_pred             cCCC----CccchhhhHHHcHHHHHHHHh--CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          548 RKQP----QKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       548 r~~~----~k~yVqd~l~~~~~~v~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ++.+    ..++|++.+.+.      .+.  .+..+|+|||+ .|.+++++.|.+
T Consensus       164 ~~~~~~~~~~g~v~~~l~~~------~~~~~~~~~v~lCGp~-~mv~~~~~~L~~  211 (261)
T TIGR02911       164 EAEEDYKGNIGLVTKYIPEL------TLKDIEEVQAIVVGPP-IMMKFTVQELLK  211 (261)
T ss_pred             CCCCCCcCCeeccCHhHHhc------cCCCccceEEEEECCH-HHHHHHHHHHHH
Confidence            4322    345666554432      111  26789999998 999998887765

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.

>TIGR01753 flav_short flavodoxin, short chain

Probab=99.87  E-value=7.4e-22  Score=182.42  Aligned_cols=138  Identities=32%  Similarity=0.402  Sum_probs=123.8

Q ss_pred             EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCC-hhHHHHHHHHHhccCcc
Q 006868            9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP-DSMKVFWRFLLQKSLSK   87 (628)
Q Consensus         9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p-~~~~~F~~~L~~~~~~~   87 (628)
                      |+|+|+|+||||+++|+.|++.+.+.|+.+.+.++++.++.++.+++.+||++|||+.|.+| ++++.|+++|....   
T Consensus         1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~---   77 (140)
T TIGR01753         1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDID---   77 (140)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCC---
Confidence            58999999999999999999999999999999999999888899999999999999989999 99999999986543   


Q ss_pred             cccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHH
Q 006868           88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL  152 (628)
Q Consensus        88 ~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l  152 (628)
                        ++|++++|||+|++.|+ ||.+++.+++.|+++|++++.+...++...++...+.+++|.++|
T Consensus        78 --~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~l  139 (140)
T TIGR01753        78 --LGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKDL  139 (140)
T ss_pred             --CCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHHh
Confidence              78999999999999998 999999999999999999999888887776555666677777654

Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=99.87  E-value=5.5e-22  Score=201.77  Aligned_cols=165  Identities=21%  Similarity=0.299  Sum_probs=132.8

Q ss_pred             CCCHHHHHHhcCCC---cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-
Q 006868          390 QMPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-  465 (628)
Q Consensus       390 ~~p~~~l~~~lp~~---~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-  465 (628)
                      ..||||+...+|..   .+|+|||+|+|   ++.++|+|+.           .|..|++|.++++  |++|.+.+|.|. 
T Consensus        32 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~--G~~v~i~gP~G~~   95 (250)
T PRK00054         32 MKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKE--GDELDIRGPLGNG   95 (250)
T ss_pred             CCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCC--CCEEEEEcccCCC
Confidence            36899988877754   68999999997   5789999843           4889999999999  999999999986 


Q ss_pred             CCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868          466 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  545 (628)
Q Consensus       466 F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a  545 (628)
                      |.++....|+||||+|||||||++++++....+     .+++|+|++|+.+|++|.+||+++.            ++++.
T Consensus        96 f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~------------~~~~~  158 (250)
T PRK00054         96 FDLEEIGGKVLLVGGGIGVAPLYELAKELKKKG-----VEVTTVLGARTKDEVIFEEEFAKVG------------DVYVT  158 (250)
T ss_pred             CCCCCCCCeEEEEeccccHHHHHHHHHHHHHcC-----CcEEEEEEcCCHHHhhhHHHHHhcC------------CEEEE
Confidence            887655579999999999999999999987644     5799999999999999999999832            12222


Q ss_pred             EecCC--CCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          546 FSRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       546 ~Sr~~--~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                       +++.  ..++||++.+.+..       .....||+|||+ .|.+++.+.|.+
T Consensus       159 -~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp~-~m~~~v~~~l~~  202 (250)
T PRK00054        159 -TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGPE-IMMKKVVEILKE  202 (250)
T ss_pred             -ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCCH-HHHHHHHHHHHH
Confidence             2222  24678988776542       245689999998 999999888876

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=99.87  E-value=5.1e-22  Score=205.28  Aligned_cols=171  Identities=16%  Similarity=0.165  Sum_probs=132.4

Q ss_pred             CCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceE-EEEeecCCCCC
Q 006868          391 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLPR  468 (628)
Q Consensus       391 ~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~i~~~~g~F~l  468 (628)
                      .||||+...++.. .+|+|||+|++ .+++.++|+|+.           .|..|++|.++++  |++| .+.+|.|+|..
T Consensus        29 ~pGQfv~l~~~~~~~~rpySias~~-~~~~~i~l~vk~-----------~G~~T~~L~~l~~--Gd~v~~i~GP~G~~~~   94 (281)
T PRK06222         29 KPGQFVIVRIDEKGERIPLTIADYD-REKGTITIVFQA-----------VGKSTRKLAELKE--GDSILDVVGPLGKPSE   94 (281)
T ss_pred             CCCeEEEEEeCCCCCceeeEeeEEc-CCCCEEEEEEEe-----------CCcHHHHHhcCCC--CCEEeeEEcCCCCCcc
Confidence            5999998887643 46899999987 456789999843           3899999999999  9999 79999998765


Q ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006868          469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR  548 (628)
Q Consensus       469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr  548 (628)
                      .+..+++||||+|+||||+++++++....+     .+++++||+|+++|++|.+||+++...           +++ .+.
T Consensus        95 ~~~~~~~llIaGGiGiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~d~~~~~el~~~~~~-----------~~v-~~~  157 (281)
T PRK06222         95 IEKFGTVVCVGGGVGIAPVYPIAKALKEAG-----NKVITIIGARNKDLLILEDEMKAVSDE-----------LYV-TTD  157 (281)
T ss_pred             cCCCCeEEEEeCcCcHHHHHHHHHHHHHCC-----CeEEEEEecCCHHHhhcHHHHHhhCCe-----------EEE-EcC
Confidence            533579999999999999999999876543     579999999999999999999887654           122 222


Q ss_pred             CCC--CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          549 KQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       549 ~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                      +..  .+++|++.+.+....    ..+...||+|||+ .|.+.+.+.+.+.
T Consensus       158 d~~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~~  203 (281)
T PRK06222        158 DGSYGRKGFVTDVLKELLES----GKKVDRVVAIGPV-IMMKFVAELTKPY  203 (281)
T ss_pred             CCCcCcccchHHHHHHHhhc----CCCCcEEEEECCH-HHHHHHHHHHHhc
Confidence            322  467788766543211    1114579999998 9999998877553

>PRK12359 flavodoxin FldB; Provisional

Probab=99.86  E-value=4.7e-21  Score=181.88  Aligned_cols=144  Identities=22%  Similarity=0.289  Sum_probs=119.8

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS   86 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~   86 (628)
                      |++.|+|+|.|||||.+|+.|++.+.  +..+++.+++++++.++..++.+||++||||.|++|+++..|+..|....  
T Consensus         1 Mki~I~Y~S~TGNTe~vAe~I~~~lg--~~~v~v~~i~~~~~~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~~d--   76 (172)
T PRK12359          1 MKIGLFYGSSTCYTEMAAEKIRDIIG--EELVDLHNLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDLN--   76 (172)
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHhC--CCeEEEEEcccCChhHHccCCEEEEEecccCCCcCcHHHHHHHHHHhhCC--
Confidence            57999999999999999999999873  12378999999988899999999999999999999999999999886654  


Q ss_pred             ccccCCcEEEEEecCCc-Ch-hHHHHHHHHHHHHHHhcCCeEeecc-----------e-----------eeeCCCC-CCc
Q 006868           87 KQWLEGVRYAVFGLGDS-GY-QKFNFVAKKLDNRLLDLGATAVVER-----------G-----------LGDDQHP-SGY  141 (628)
Q Consensus        87 ~~~l~~~~~aVfGlGds-~y-~~f~~a~~~l~~~L~~lGa~~v~~~-----------~-----------~~d~~~~-~g~  141 (628)
                         |+|+++|+||+||+ .| .+||.+++.+.++|++.||+.+...           .           -+|+.+. +-.
T Consensus        77 ---l~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD~~nq~~~t  153 (172)
T PRK12359         77 ---LEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALDEVNQYDLS  153 (172)
T ss_pred             ---CCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEcCCCchhhh
Confidence               89999999999998 68 5899999999999999999976211           1           1222211 125


Q ss_pred             hhhHHHHHHHHHHHHH
Q 006868          142 EGALDPWMRSLWRRLH  157 (628)
Q Consensus       142 ~~~~~~W~~~l~~~l~  157 (628)
                      ++.++.|+++|.+.+.
T Consensus       154 ~~ri~~W~~~~~~~~~  169 (172)
T PRK12359        154 DERIQQWCEQILLEMA  169 (172)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7889999999887664

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.86  E-value=7.1e-22  Score=200.70  Aligned_cols=170  Identities=15%  Similarity=0.163  Sum_probs=131.5

Q ss_pred             CCHHHHHHhcCC-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceE-EEEeecCCCCC
Q 006868          391 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLPR  468 (628)
Q Consensus       391 ~p~~~l~~~lp~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~i~~~~g~F~l  468 (628)
                      .||||+...++. ...|+|||+|.| .+.+.++|+|+           +.|..|.+|.++++  |++| .+.+|.|.|.+
T Consensus        28 ~pGQf~~l~~~~~~~~~pySi~s~~-~~~~~~~~~vk-----------~~G~~t~~l~~l~~--G~~v~~i~gP~G~~~~   93 (248)
T cd06219          28 KPGQFVIVRADEKGERIPLTIADWD-PEKGTITIVVQ-----------VVGKSTRELATLEE--GDKIHDVVGPLGKPSE   93 (248)
T ss_pred             CCCcEEEEEcCCCCCccceEeEEEc-CCCCEEEEEEE-----------eCCchHHHHHhcCC--CCEeeeeecCCCCCee
Confidence            589998777653 357999999987 35678999983           23888999999999  9999 69999998765


Q ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006868          469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR  548 (628)
Q Consensus       469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr  548 (628)
                      .+...|+||||+||||||+++++++....+     .+++||||+|+.+|++|.+||+++.++           ++++ ++
T Consensus        94 ~~~~~~~lliagG~GiaP~~~~l~~~~~~~-----~~v~l~~~~r~~~~~~~~~el~~l~~~-----------~~~~-~~  156 (248)
T cd06219          94 IENYGTVVFVGGGVGIAPIYPIAKALKEAG-----NRVITIIGARTKDLVILEDEFRAVSDE-----------LIIT-TD  156 (248)
T ss_pred             cCCCCeEEEEeCcccHHHHHHHHHHHHHcC-----CeEEEEEEcCCHHHhhhHHHHHhhcCe-----------EEEE-eC
Confidence            533579999999999999999999976643     589999999999999999999998654           2222 33


Q ss_pred             CCC--CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          549 KQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       549 ~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      +..  ..+|+++.+.+....    ......||+|||+ .|.+.+.+.|.+
T Consensus       157 ~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGP~-~m~~~~~~~l~~  201 (248)
T cd06219         157 DGSYGEKGFVTDPLKELIES----GEKVDLVIAIGPP-IMMKAVSELTRP  201 (248)
T ss_pred             CCCCCccccchHHHHHHHhc----cCCccEEEEECCH-HHHHHHHHHHHH
Confidence            322  356777655443211    1224689999998 999998887764

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.86  E-value=1.3e-21  Score=198.65  Aligned_cols=176  Identities=21%  Similarity=0.295  Sum_probs=145.3

Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP  469 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp  469 (628)
                      ..||||+...+|....|+|||+|.+ .+.+.++|.|++         ...|.+|.++..+++  ||.|.+.||.|++.+.
T Consensus        36 ~~pGQfv~l~~~~~~~~P~si~~~~-~~~g~~~l~i~~---------~~~G~~T~~i~~~k~--gd~i~v~GP~G~~~~~  103 (252)
T COG0543          36 FKPGQFVMLRVPGGVRRPYSLASAP-DDKGELELHIRV---------YEVGKVTKYIFGLKE--GDKIRVRGPLGNGFLR  103 (252)
T ss_pred             cCCCcEEEEEeCCCcEEEeeeccCC-CcCCcEEEEEEE---------EeCChHHHHHhhccC--CCEEEEEcCCCCCccc
Confidence            4799999999999999999999998 456777777754         467999999999999  9999999999987666


Q ss_pred             -CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe-
Q 006868          470 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS-  547 (628)
Q Consensus       470 -~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S-  547 (628)
                       +..+|+++||+|||+||+++++++....+ .  ..+++++||.|+++|+++.+||+++...          +++.+.+ 
T Consensus       104 ~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~--~~~V~~~~G~~~~~dl~~~~el~~~~~~----------~~~~~~~~  170 (252)
T COG0543         104 EKIGKPVLLIAGGTGIAPLYAIAKELKEKG-D--ANKVTLLYGARTAKDLLLLDELEELAEK----------EVHPVTDD  170 (252)
T ss_pred             cccCCcEEEEecccCHhHHHHHHHHHHhcC-C--CceEEEEEeccChhhcccHHHHHHhhcC----------cEEEEECC
Confidence             67788999999999999999999998865 2  3789999999999999999999999875          3444444 


Q ss_pred             cCCCCccch-hhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          548 RKQPQKVYV-QHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       548 r~~~~k~yV-qd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                      .....+++| ++.+.+..+.      +...+|+|||+ .|.+.+.+.+.+-
T Consensus       171 ~~~G~~G~v~~~~~~~~~~~------~~~~v~~cGp~-~M~~~v~~~~~~~  214 (252)
T COG0543         171 GWKGRKGFVTTDVLKELLDL------EVDDVYICGPP-AMVKAVREKLKEY  214 (252)
T ss_pred             CCCccCcceeHHHHhhhccc------cCCEEEEECCH-HHHHHHHHHHHhc
Confidence            122257888 7777665221      46899999998 9999888777663

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.86  E-value=1.6e-21  Score=196.32  Aligned_cols=164  Identities=22%  Similarity=0.286  Sum_probs=130.0

Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-CCC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR  468 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l  468 (628)
                      ..||||+...+|....|+|||+|+|    +.++|+|+           +.|.+|+||.++++  |++|.+.+|.|. |.+
T Consensus        24 ~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~-----------~~G~~s~~L~~l~~--Gd~v~i~gP~G~~f~~   86 (233)
T cd06220          24 FKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVK-----------KVGEATSALHDLKE--GDKLGIRGPYGNGFEL   86 (233)
T ss_pred             CCCCceEEEEeCCCCcceeEEecCC----CeEEEEEE-----------ecChHHHHHHhcCC--CCEEEEECcCCCCccC
Confidence            4699999888877667999999997    78999983           24889999999999  999999999997 776


Q ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006868          469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR  548 (628)
Q Consensus       469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr  548 (628)
                      +  .+|+||||+|||||||++++++....      .+++|+||+|+++|++|.+||+++    .        ++.+..+.
T Consensus        87 ~--~~~~vliAgGtGitP~~sil~~~~~~------~~i~l~~~~r~~~d~~~~~eL~~~----~--------~~~~~~~~  146 (233)
T cd06220          87 V--GGKVLLIGGGIGIAPLAPLAERLKKA------ADVTVLLGARTKEELLFLDRLRKS----D--------ELIVTTDD  146 (233)
T ss_pred             C--CCeEEEEecCcChHHHHHHHHHHHhc------CCEEEEEecCChHHChhHHHHhhC----C--------cEEEEEeC
Confidence            5  57999999999999999999988764      579999999999999999999871    2        22222221


Q ss_pred             -CCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          549 -KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       549 -~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                       ....++++++.+.+..      ......+|+|||+ .|.+.+.+.|.+.
T Consensus       147 ~~~~~~g~~~~~l~~~~------~~~~~~vyicGp~-~m~~~~~~~L~~~  189 (233)
T cd06220         147 GSYGFKGFVTDLLKELD------LEEYDAIYVCGPE-IMMYKVLEILDER  189 (233)
T ss_pred             CCCcccceehHHHhhhc------ccCCCEEEEECCH-HHHHHHHHHHHhc
Confidence             1123567777655432      1235689999998 9999988888653

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=99.85  E-value=2.3e-21  Score=196.40  Aligned_cols=171  Identities=17%  Similarity=0.159  Sum_probs=131.3

Q ss_pred             CCCHHHHHHhcC---CCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCC
Q 006868          390 QMPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  466 (628)
Q Consensus       390 ~~p~~~l~~~lp---~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F  466 (628)
                      ..||||+...+|   ....|+|||+|.| ...+.++|+|+.           .|..|+||.++++  |++|.+.+|.|.|
T Consensus        25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~-~~~~~l~l~i~~-----------~G~~t~~l~~~~~--G~~l~i~gP~G~~   90 (243)
T cd06192          25 FRPGQFVFLRNFESPGLERIPLSLAGVD-PEEGTISLLVEI-----------RGPKTKLIAELKP--GEKLDVMGPLGNG   90 (243)
T ss_pred             CCCCCeEEEecCCCCCceeeeeEeeecC-CCCCEEEEEEEE-----------cCchHHHHHhCCC--CCEEEEEccCCCC
Confidence            358999887774   4568999999997 456889999842           4889999999999  9999999999987


Q ss_pred             CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868          467 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  545 (628)
Q Consensus       467 ~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a  545 (628)
                      .+. +...++||||+|||||||++++++.....     .+++||||+|+.+|.+|.+||+++. .          .+ ..
T Consensus        91 ~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~-~----------~~-~~  153 (243)
T cd06192          91 FEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG-----NKVTVLAGAKKAKEEFLDEYFELPA-D----------VE-IW  153 (243)
T ss_pred             CccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC-----CeEEEEEecCcHHHHHHHHHHHhhc-C----------eE-EE
Confidence            655 44689999999999999999999987653     6899999999999999999998762 1          22 22


Q ss_pred             EecCCC--CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 006868          546 FSRKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV  598 (628)
Q Consensus       546 ~Sr~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il  598 (628)
                      .+.++.  ..++|++...    . .. ..++..+|+|||+ .|.+.+++.|.+..
T Consensus       154 ~~~~~~~~~~g~v~~~~~----~-~~-~~~~~~v~icGp~-~mv~~~~~~l~~~g  201 (243)
T cd06192         154 TTDDGELGLEGKVTDSDK----P-IP-LEDVDRIIVAGSD-IMMKAVVEALDEWL  201 (243)
T ss_pred             EecCCCCccceeechhhh----h-hh-cccCCEEEEECCH-HHHHHHHHHHHhhc
Confidence            333322  3456555311    0 00 1235689999998 99999998887753

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative

Probab=99.85  E-value=7.2e-21  Score=176.16  Aligned_cols=133  Identities=20%  Similarity=0.211  Sum_probs=110.1

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcE-EeeCCCC--CccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVV-VRPVDDY--DARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK   83 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~-~~~l~~~--~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~   83 (628)
                      |+++|+|+|+||||+++|+.|++.+...|+.++ +.++.++  ...++.+++.+||++||||.|.+|+++..|++++.. 
T Consensus         1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~-   79 (140)
T TIGR01754         1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGY-   79 (140)
T ss_pred             CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc-
Confidence            579999999999999999999999999898877 5666643  234667899999999999999999999999998733 


Q ss_pred             cCcccccCCcEEEEEecCCcCh--hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCC-CchhhHHHHHHHH
Q 006868           84 SLSKQWLEGVRYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPS-GYEGALDPWMRSL  152 (628)
Q Consensus        84 ~~~~~~l~~~~~aVfGlGds~y--~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~-g~~~~~~~W~~~l  152 (628)
                             ++++++|||+||+.|  ++||.+++.++++|+++     .|.++++....+ .+...+.+|.+++
T Consensus        80 -------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~-----~~~~~i~~~~~~~~d~~~~~~~~~~~  139 (140)
T TIGR01754        80 -------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSS-----HPVLKIEQMPHGEQDGRAIYDWLEGV  139 (140)
T ss_pred             -------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCc-----CCceeEecCCcccccHHHHHHHHHHh
Confidence                   578999999999999  58999999999999776     345566654332 2567788998875

This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.

>COG0716 FldA Flavodoxins [Energy production and conversion]

Probab=99.85  E-value=1.4e-20  Score=176.37  Aligned_cols=145  Identities=28%  Similarity=0.353  Sum_probs=125.5

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL   85 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~   85 (628)
                      |++++|+|+|.|||||.+|+.|++.|...|+++.+..........+..++.+++++||+|.|+.|+++.+|+..+...  
T Consensus         1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~t~~~ge~~~~~~~f~~~~~~~--   78 (151)
T COG0716           1 MMKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKDDLLESYDELLLGTPTWGAGELPDDWYDFIEELEPI--   78 (151)
T ss_pred             CCeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcchhhhccCCEEEEEeCCCCCCcCCccHHHHHHHhccc--
Confidence            789999999999999999999999999999988666666555434458999999999999999999999999998662  


Q ss_pred             cccccCCcEEEEEecCCcChhH-HHHHHHHHHHHHHhcC--CeEeecceee--eCCCCCCchhhHHHHHHHHHHH
Q 006868           86 SKQWLEGVRYAVFGLGDSGYQK-FNFVAKKLDNRLLDLG--ATAVVERGLG--DDQHPSGYEGALDPWMRSLWRR  155 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds~y~~-f~~a~~~l~~~L~~lG--a~~v~~~~~~--d~~~~~g~~~~~~~W~~~l~~~  155 (628)
                         .++++.|++||+||+.|.. ||.++..+.+.|+..|  +..+.+....  +....+..++.++.|.++++..
T Consensus        79 ---~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~~~~  150 (151)
T COG0716          79 ---DFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQILNE  150 (151)
T ss_pred             ---CcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHHHhh
Confidence               3889999999999999987 9999999999999999  5666666555  6666677999999999998753

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=99.84  E-value=1e-20  Score=188.60  Aligned_cols=157  Identities=17%  Similarity=0.265  Sum_probs=118.6

Q ss_pred             CCHHHHHHhcCCC-------------------cccceeeccCCCCC--CCeEEEEEEEEEeecCCCCcccccccHHhhCc
Q 006868          391 MPIDWLVQLVPPL-------------------KTRAFSISSSPLAH--PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL  449 (628)
Q Consensus       391 ~p~~~l~~~lp~~-------------------~~R~YSIaSsp~~~--~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l  449 (628)
                      .|||++...+|..                   ..|+|||||+|..+  .+.++|+|+.           .|.+|++|.++
T Consensus        27 ~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~   95 (220)
T cd06197          27 TPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQV   95 (220)
T ss_pred             CCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHh
Confidence            4788877766642                   35999999999433  2789999842           38999999754


Q ss_pred             CCCC---CceEEEEeecCCCCCCC----CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHH
Q 006868          450 DPQQ---GIYIPAWFQKGSLPRPP----PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE  522 (628)
Q Consensus       450 ~~~~---G~~v~i~~~~g~F~lp~----~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~  522 (628)
                      ....   |+.|.+.+|.|.|.++.    ...++||||+|||||||+++++++......  ..+++|+||+|+.+|++|.+
T Consensus        96 ~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~~--~~~v~l~~~~r~~~~~~~~~  173 (220)
T cd06197          96 ARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRNT--TWDITLLWSLREDDLPLVMD  173 (220)
T ss_pred             hhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcccC--CCcEEEEEEecchhhHHHHH
Confidence            3212   89999999999998872    357999999999999999999998764321  26899999999999999999


Q ss_pred             HHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          523 LWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       523 el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ||.++.+. . +      .+....+                           ..||+|||+ .|.+.+.+.+.+
T Consensus       174 el~~~~~~-~-~------~~~~~~~---------------------------~~v~~CGP~-~m~~~~~~~~~~  211 (220)
T cd06197         174 TLVRFPGL-P-V------STTLFIT---------------------------SEVYLCGPP-ALEKAVLEWLEG  211 (220)
T ss_pred             HHHhccCC-c-e------EEEEEEe---------------------------ccEEEECcH-HHHHHHHHHhhh
Confidence            99876542 1 1      1211111                           169999998 999988877664

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>TIGR01752 flav_long flavodoxin, long chain

Probab=99.84  E-value=4.4e-20  Score=176.03  Aligned_cols=116  Identities=29%  Similarity=0.347  Sum_probs=103.9

Q ss_pred             cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcc
Q 006868            8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSK   87 (628)
Q Consensus         8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~   87 (628)
                      +|+|+|+|.||||+++|+.|++.+.+  ..++++++++.+..++.+++.+||++||||.|.+|+++..|++.|....   
T Consensus         1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~--~~~~i~~~~~~~~~~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~~~---   75 (167)
T TIGR01752         1 KIGIFYGTDTGNTEGIAEKIQKELGE--DDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELD---   75 (167)
T ss_pred             CEEEEEECCCChHHHHHHHHHHHhCC--CceEEEEcccCCHhHHhhCCEEEEEecCCCCCcCcHHHHHHHHHhhcCC---
Confidence            58999999999999999999999864  4578999998887788999999999999999999999999999885433   


Q ss_pred             cccCCcEEEEEecCCc-Chh-HHHHHHHHHHHHHHhcCCeEeecc
Q 006868           88 QWLEGVRYAVFGLGDS-GYQ-KFNFVAKKLDNRLLDLGATAVVER  130 (628)
Q Consensus        88 ~~l~~~~~aVfGlGds-~y~-~f~~a~~~l~~~L~~lGa~~v~~~  130 (628)
                        ++|+++++||+||+ .|+ +||.+++.+.+.|++.|++.+...
T Consensus        76 --l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~  118 (167)
T TIGR01752        76 --FTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFW  118 (167)
T ss_pred             --CCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEcee
Confidence              78999999999997 585 999999999999999999988643

Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.83  E-value=1.6e-20  Score=183.49  Aligned_cols=183  Identities=20%  Similarity=0.337  Sum_probs=146.8

Q ss_pred             cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCCCCCCCEEEEeCCCC
Q 006868          404 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTG  483 (628)
Q Consensus       404 ~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~GtG  483 (628)
                      .-|.||+||-| ..-+.|.+-|++..-+-.....+.|.||+|+-+|++  ||+|.|++|.|.|...+.++|+|+|++|.|
T Consensus       210 ~~rAYSmAsYP-eE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKp--GDKvtisGPfGEfFaKdtdaemvFigGGAG  286 (410)
T COG2871         210 IIRAYSMASYP-EEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGAG  286 (410)
T ss_pred             HHHHhhhhcCh-hhcCeEEEEEEeccCCCCCCCCCccceeeeEEeecC--CCeEEEeccchhhhhccCCCceEEEecCcC
Confidence            46999999999 566788888877654433456678999999999999  999999999999887777899999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCC------ccchh
Q 006868          484 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ------KVYVQ  557 (628)
Q Consensus       484 IAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~------k~yVq  557 (628)
                      .||+||-+-....+..+  .+++.+.||+|+..+.+|++|+++++++.+++      +.++|+|....+      .+++.
T Consensus       287 mapmRSHIfDqL~rlhS--kRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF------~wH~aLSdplpEDnW~g~TgFih  358 (410)
T COG2871         287 MAPMRSHIFDQLKRLHS--KRKISFWYGARSLREMFYQEDFDQLQAENPNF------HWHLALSDPLPEDNWDGYTGFIH  358 (410)
T ss_pred             cCchHHHHHHHHHhhcc--cceeeeeeccchHHHhHHHHHHHHHHhhCCCc------EEEEEecCCCCcCCcccchhHHH
Confidence            99999988776654432  38999999999999999999999999988888      899999986542      35555


Q ss_pred             hhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 006868          558 HKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSK  600 (628)
Q Consensus       558 d~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~il~~  600 (628)
                      .++.+.  .+.++= .+++.+|+|||+ .|-..|.+.|.+...+
T Consensus       359 nv~~en--~Lk~h~aPEDceyYmCGPp-~mNasvikmL~dlGVE  399 (410)
T COG2871         359 NVLYEN--YLKDHEAPEDCEYYMCGPP-LMNASVIKMLKDLGVE  399 (410)
T ss_pred             HHHHhh--hhhcCCCchheeEEeeCcc-hhhHHHHHHHHhcCcc
Confidence            555443  111111 238999999999 8888888877776443

>PRK05802 hypothetical protein; Provisional

Probab=99.83  E-value=1.5e-20  Score=197.09  Aligned_cols=168  Identities=13%  Similarity=0.094  Sum_probs=129.3

Q ss_pred             CCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecC--C
Q 006868          391 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG--S  465 (628)
Q Consensus       391 ~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g--~  465 (628)
                      .||||+...+|.   ...|+|||+|+| ...+.++|+|++           .|..|++|.++++  |++|.+.+|.|  .
T Consensus        96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~-~~~g~l~l~ik~-----------~G~~T~~L~~l~~--Gd~l~v~GP~GnG~  161 (320)
T PRK05802         96 YPGSFVFLRNKNSSSFFDVPISIMEAD-TEENIIKVAIEI-----------RGVKTKKIAKLNK--GDEILLRGPYWNGI  161 (320)
T ss_pred             CCCceEEEEEcCCCCEeEEeeEecccC-CCCCEEEEEEEe-----------cChhHHHHhcCCC--CCEEEEeCCCCcCc
Confidence            589998877753   346999999998 456889999943           4899999999999  99999999985  4


Q ss_pred             CCCC----CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCc
Q 006868          466 LPRP----PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGG  541 (628)
Q Consensus       466 F~lp----~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~  541 (628)
                      |.++    ....++|+||+|+||||+++++++...++     .+++|+||+|+++|++|.++|+++..+          .
T Consensus       162 F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~-----~~v~li~g~r~~~~~~~~~el~~~~~~----------~  226 (320)
T PRK05802        162 LGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG-----NKIIVIIDKGPFKNNFIKEYLELYNIE----------I  226 (320)
T ss_pred             CCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC-----CcEEEEEeCCCHHHHHHHHHHHHhhCc----------e
Confidence            7553    23468999999999999999999987654     579999999999999999999998655          1


Q ss_pred             EEEEEecCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          542 FYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       542 ~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                      ....+..++.    .+++|++++.+.         +...||+|||. .|.+.|.+.+.+.
T Consensus       227 ~~~~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP~-~M~k~v~~~l~~~  276 (320)
T PRK05802        227 IELNLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGSD-ILHYKIIEYLDKL  276 (320)
T ss_pred             EEEEecccCCCCccccchHHHHhcCC---------CCCEEEEECCH-HHHHHHHHHHhhh
Confidence            1121111221    234555554422         23689999998 9999998888764

>PLN02252 nitrate reductase [NADPH]

Probab=99.82  E-value=2.7e-20  Score=216.64  Aligned_cols=191  Identities=18%  Similarity=0.160  Sum_probs=141.2

Q ss_pred             CCHHHHHHhcC--C-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCC
Q 006868          391 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP  467 (628)
Q Consensus       391 ~p~~~l~~~lp--~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~  467 (628)
                      .|+||+...++  . ...|+|||+|.+ ...+.++|+|+++......+....|.+|+||.+|++  |+.|.+.+|.|.|.
T Consensus       666 ~pGQhV~l~~~~~g~~~~R~YSpaS~~-~~~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~v--Gd~V~V~GP~G~f~  742 (888)
T PLN02252        666 PVGKHVFLCATINGKLCMRAYTPTSSD-DEVGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPI--GDTIDVKGPLGHIE  742 (888)
T ss_pred             CCCCEEEEEEecCCeEEEeeeEecccC-CCCCEEEEEEEEEeccccCccCCCCchhhHHhcCCC--CCEEEEecCcccee
Confidence            47888766653  2 247999999998 456799999987621111112246999999999999  99999999999763


Q ss_pred             --------CC-C--CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcC-CCcc
Q 006868          468 --------RP-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFS  535 (628)
Q Consensus       468 --------lp-~--~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~  535 (628)
                              ++ .  ..++++|||+|||||||++++++.......  ..+++||||+|+.+|++|++||+++.+.+ +++ 
T Consensus       743 y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~d--~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~-  819 (888)
T PLN02252        743 YAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPED--KTEMSLVYANRTEDDILLREELDRWAAEHPDRL-  819 (888)
T ss_pred             ecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccCC--CCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCE-
Confidence                    33 1  247999999999999999999998765321  26899999999999999999999999875 466 


Q ss_pred             cCCCCcEEEEEecCC-C----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHH-HHHHHHH
Q 006868          536 EAKGGGFYVAFSRKQ-P----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSD-VWSTFEE  596 (628)
Q Consensus       536 ~~~~~~~~~a~Sr~~-~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~-v~~~L~~  596 (628)
                           +++.++|+.. +    .+++|++.+.+..  + .....+..+|+|||+ .|.+. ++..|.+
T Consensus       820 -----~v~~vls~~~~~~w~g~~GrV~~~ll~~~--l-~~~~~~~~vyiCGPp-~Mi~~av~~~L~~  877 (888)
T PLN02252        820 -----KVWYVVSQVKREGWKYSVGRVTEAMLREH--L-PEGGDETLALMCGPP-PMIEFACQPNLEK  877 (888)
T ss_pred             -----EEEEEecCCCcCCCCCcCCcCCHHHHHHh--c-ccCCCCeEEEEeCCH-HHHHHHHHHHHHH
Confidence                 7888888743 1    3577776443221  0 001236789999998 88874 6656644

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.81  E-value=2.9e-19  Score=180.69  Aligned_cols=159  Identities=19%  Similarity=0.224  Sum_probs=132.6

Q ss_pred             CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCC-CCCCCEEEEeCC
Q 006868          403 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PPSVPLILIGPG  481 (628)
Q Consensus       403 ~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp-~~~~piimIa~G  481 (628)
                      .--|+||-.|++. +.+.++|.|++         ...|.+|.||++|+.  ||+|.+++|.|.|.++ ...+.+.|||+|
T Consensus        98 ~vvRpYTPvs~~~-~~g~~~l~VK~---------Y~~G~mS~~l~~Lki--Gd~ve~rGP~G~~~~~~~~~~~l~miAgG  165 (286)
T KOG0534|consen   98 LVVRPYTPVSLDD-DKGYFDLVVKV---------YPKGKMSQHLDSLKI--GDTVEFRGPIGEFKYDPQKAKHLGMIAGG  165 (286)
T ss_pred             EEEEecCCccCcc-ccceEEEEEEe---------ccCCcccHHHhcCCC--CCEEEEecCccceEecCCCcceEEEEecc
Confidence            3689999999983 35899999944         567999999999999  9999999999998887 667899999999


Q ss_pred             CChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCcEEEEEecCCC----Cccch
Q 006868          482 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFSRKQP----QKVYV  556 (628)
Q Consensus       482 tGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~~a~Sr~~~----~k~yV  556 (628)
                      ||||||..++++.......  ..+++|+|.+++.+|.++++||+.+.++++ .+      ++..+.++.+.    .++||
T Consensus       166 tGItPmlqii~~il~~~~d--~tki~lly~N~te~DILlr~eL~~la~~~p~rf------~~~y~v~~~~~~w~~~~g~I  237 (286)
T KOG0534|consen  166 TGITPMLQLIRAILKDPED--TTKISLLYANKTEDDILLREELEELASKYPERF------KVWYVVDQPPEIWDGSVGFI  237 (286)
T ss_pred             cchhhHHHHHHHHhcCCCC--CcEEEEEEecCCccccchHHHHHHHHhhCcceE------EEEEEEcCCcccccCccCcc
Confidence            9999999999999886543  478999999999999999999999999877 66      78888887663    46777


Q ss_pred             hh-hHHHcHHHHHHHHhC----CCEEEEeCCCCCCHHH
Q 006868          557 QH-KMLEQSQRIWNLLLS----KASIYVAGSATKMPSD  589 (628)
Q Consensus       557 qd-~l~~~~~~v~~~l~~----~~~iyvCG~~~~M~~~  589 (628)
                      .. .|.++       +..    ...++||||+ +|.+.
T Consensus       238 t~~~i~~~-------l~~~~~~~~~~liCGPp-~m~~~  267 (286)
T KOG0534|consen  238 TKDLIKEH-------LPPPKEGETLVLICGPP-PMING  267 (286)
T ss_pred             CHHHHHhh-------CCCCCCCCeEEEEECCH-HHHhH
Confidence            64 33333       322    3789999999 99874

>PRK09267 flavodoxin FldA; Validated

Probab=99.80  E-value=9.2e-19  Score=167.38  Aligned_cols=144  Identities=24%  Similarity=0.313  Sum_probs=116.8

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL   85 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~   85 (628)
                      ||+++|+|+|.||||+++|+.|++.+..  ..+.++++++.+..++.+++.+||++|||+.|.+|+.+..|++.+.... 
T Consensus         1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~--~~~~~~~~~~~~~~~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~-   77 (169)
T PRK09267          1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK--DVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEID-   77 (169)
T ss_pred             CCeEEEEEECCCChHHHHHHHHHHHhCC--CceEEEEhhhCCHhhHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCC-
Confidence            5789999999999999999999999963  3578999998877788899999999999988999999999998874432 


Q ss_pred             cccccCCcEEEEEecCCc-Ch-hHHHHHHHHHHHHHHhcCCeEeecc---ee-----------------eeCCCC-CCch
Q 006868           86 SKQWLEGVRYAVFGLGDS-GY-QKFNFVAKKLDNRLLDLGATAVVER---GL-----------------GDDQHP-SGYE  142 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds-~y-~~f~~a~~~l~~~L~~lGa~~v~~~---~~-----------------~d~~~~-~g~~  142 (628)
                          ++|+++++||+||+ .| .+||.+.+.+.+.|++.|++.+...   +.                 .|...+ +-.+
T Consensus        78 ----l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~~~~~~~td  153 (169)
T PRK09267         78 ----FSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDEDNQSELTD  153 (169)
T ss_pred             ----CCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecCCCchhhhH
Confidence                78999999999987 58 5899999999999999998876441   11                 111111 1135


Q ss_pred             hhHHHHHHHHHHHH
Q 006868          143 GALDPWMRSLWRRL  156 (628)
Q Consensus       143 ~~~~~W~~~l~~~l  156 (628)
                      +.+++|+++|.+.+
T Consensus       154 ~~i~~w~~~i~~~~  167 (169)
T PRK09267        154 ERIEAWVKQIKPEF  167 (169)
T ss_pred             HHHHHHHHHHHHHh
Confidence            78889999887654

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.79  E-value=2.4e-19  Score=216.98  Aligned_cols=182  Identities=16%  Similarity=0.199  Sum_probs=140.8

Q ss_pred             CCCHHHHHHhcC--C-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecC--
Q 006868          390 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG--  464 (628)
Q Consensus       390 ~~p~~~l~~~lp--~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g--  464 (628)
                      ..||||+...++  + ...|+|||+|.| ...+.++|+|+          ...|.+|.||+++++  |++|.+.+|.|  
T Consensus       948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p-~~~~~i~l~Vr----------~~~G~~S~~L~~l~~--Gd~v~v~gp~G~~ 1014 (1167)
T PTZ00306        948 LTLGQFIAIRGDWDGQQLIGYYSPITLP-DDLGVISILAR----------GDKGTLKEWISALRP--GDSVEMKACGGLR 1014 (1167)
T ss_pred             CCCCeEEEEEeeeCCeEEEEEeccCCCC-CCCCeEEEEEE----------cCCChhHHHHhhCCC--CCEEEEeCCcCcc
Confidence            468999877764  2 246999999998 45678999883          246999999999999  99999998655  


Q ss_pred             --------CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-Cc
Q 006868          465 --------SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VF  534 (628)
Q Consensus       465 --------~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l  534 (628)
                              .|.++ ...+|+||||+|||||||++++++...........+++||||+|+.+|++|++||++|.++++ ++
T Consensus      1015 ~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f 1094 (1167)
T PTZ00306       1015 IERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKF 1094 (1167)
T ss_pred             ccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCE
Confidence                    35555 556899999999999999999998876431001268999999999999999999999988755 47


Q ss_pred             ccCCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHHHh---CCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          535 SEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLL---SKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       535 ~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~---~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                            ++++++|++++    ..++|++.+.+.      .+.   .+..+|+|||+ .|.+.+.+.|.+.
T Consensus      1095 ------~~~~~ls~~~~~w~~~~G~i~~~~l~~------~l~~~~~~~~vyiCGP~-~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306       1095 ------KCHFVLNNPPEGWTDGVGFVDRALLQS------ALQPPSKDLLVAICGPP-VMQRAVKADLLAL 1151 (1167)
T ss_pred             ------EEEEEECCCCcccCCCCCCCCHHHHHH------hcCCCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence                  78888887543    346776543222      222   36789999998 9999988877653

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=99.79  E-value=4.1e-19  Score=180.14  Aligned_cols=176  Identities=17%  Similarity=0.213  Sum_probs=137.4

Q ss_pred             CCCCHHHHHHhcCCC----cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeec
Q 006868          389 VQMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQK  463 (628)
Q Consensus       389 ~~~p~~~l~~~lp~~----~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~  463 (628)
                      ..-+||+-...++..    .|.+||||++.  ...++++.|           +.-|..|.-|. +|++  |+++.+.+|+
T Consensus       242 ~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~--~~sel~FsI-----------K~LGD~Tk~l~dnLk~--G~k~~vdGPY  306 (438)
T COG4097         242 LYQAGQFAFLKIEIEEFRMRPHPFTIACSH--EGSELRFSI-----------KALGDFTKTLKDNLKV--GTKLEVDGPY  306 (438)
T ss_pred             cccCCceEEEEeccccccCCCCCeeeeeCC--CCceEEEEe-----------hhhhhhhHHHHHhccC--CceEEEecCc
Confidence            356888877777754    49999999996  445788888           45699999897 5999  9999999999


Q ss_pred             CCCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEE
Q 006868          464 GSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY  543 (628)
Q Consensus       464 g~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~  543 (628)
                      |.|...+.....|.||+|+|||||+|+++........   .+++|||.||+.++.+|.+||+++.++.+++      .++
T Consensus       307 G~F~~~~g~~~QVWIAGGIGITPFis~l~~l~~~~s~---~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~------~lH  377 (438)
T COG4097         307 GKFDFERGLNTQVWIAGGIGITPFISMLFTLAERKSD---PPVHLFYCSRNWEEALYAEELRALAQKLPNV------VLH  377 (438)
T ss_pred             ceeecccCCcccEEEecCcCcchHHHHHHhhcccccC---CceEEEEEecCCchhHHHHHHHHHHhcCCCe------EEE
Confidence            9998884444499999999999999999999885543   8999999999999999999999999965766      677


Q ss_pred             EEEecCCCCccchhh-hHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          544 VAFSRKQPQKVYVQH-KMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       544 ~a~Sr~~~~k~yVqd-~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                      +.-|.   .++|+.. .+++..+.     ..--.||+|||. +|.+.+++.|++.
T Consensus       378 iiDSs---~~g~l~~e~ler~~~~-----~~~~sv~fCGP~-~m~dsL~r~l~~~  423 (438)
T COG4097         378 IIDSS---KDGYLDQEDLERYPDR-----PRTRSVFFCGPI-KMMDSLRRDLKKQ  423 (438)
T ss_pred             EecCC---CCCccCHHHhhccccc-----cCcceEEEEcCH-HHHHHHHHHHHHc
Confidence            74443   3556543 22222121     113489999998 9999888887764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.78  E-value=4.2e-19  Score=207.35  Aligned_cols=171  Identities=18%  Similarity=0.218  Sum_probs=135.0

Q ss_pred             CCCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceE-EEEeecCCCC
Q 006868          390 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLP  467 (628)
Q Consensus       390 ~~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~i~~~~g~F~  467 (628)
                      ..||||+...++.. .+|+|||+|.+ ...+.++|+|.+           .|..|.+|+++++  |+.| .+.+|.|+|.
T Consensus        28 ~~pGQFv~l~~~~~~~~rp~Si~~~~-~~~g~i~~~vk~-----------vG~~T~~L~~l~~--Gd~v~~v~GP~G~~~   93 (752)
T PRK12778         28 RKPGQFVIVRVGEKGERIPLTIADAD-PEKGTITLVIQE-----------VGLSTTKLCELNE--GDYITDVVGPLGNPS   93 (752)
T ss_pred             CCCCeeEEEEeCCCCCeeEEEeeeeC-CCCCEEEEEEEE-----------cCchHHHHhcCCC--CCEeCeEeCCCCCCc
Confidence            35999998887653 46899999997 456889999954           3899999999999  9999 7999999887


Q ss_pred             CCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868          468 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  547 (628)
Q Consensus       468 lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S  547 (628)
                      ......+++|||+|+|||||++++++....+     .++++|||+|+.+|++|.+||++|...           +.++ +
T Consensus        94 ~~~~~~~~llvaGG~GiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~~l~~~~el~~~~~~-----------~~~~-t  156 (752)
T PRK12778         94 EIENYGTVVCAGGGVGVAPMLPIVKALKAAG-----NRVITILGGRSKELIILEDEMRESSDE-----------VIIM-T  156 (752)
T ss_pred             cCCCCCeEEEEECCEeHHHHHHHHHHHHHCC-----CeEEEEeccCCHHHhhhHHHHHhhcCe-----------EEEE-E
Confidence            6633479999999999999999999887754     589999999999999999999987654           2222 2


Q ss_pred             cCCC--CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          548 RKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       548 r~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      .++.  .+++|++.+.+....    ..+...||+|||+ .|.+.+.+.+.+
T Consensus       157 ~dg~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~  202 (752)
T PRK12778        157 DDGSYGRKGLVTDGLEEVIKR----ETKVDKVFAIGPA-IMMKFVCLLTKK  202 (752)
T ss_pred             CCCCCCCcccHHHHHHHHhhc----CCCCCEEEEECCH-HHHHHHHHHHHH
Confidence            3322  468888876554221    1124579999998 999999887754

>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]

Probab=99.78  E-value=2.6e-18  Score=176.37  Aligned_cols=144  Identities=29%  Similarity=0.433  Sum_probs=125.3

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhc---
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK---   83 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~---   83 (628)
                      .+-.|+|+|+||+|+++|+.+++.+......+.+++++ +++.+++ ..+++|++.|+.+|++|  +.-|++||...   
T Consensus        47 ~~~~vfy~s~~GtA~~~A~~~~e~~~sld~~~~llnl~-y~~~d~p-en~~~~lv~~~~~~~~~--~d~~~~~L~Esa~D  122 (601)
T KOG1160|consen   47 IKSKVFYSSLTGTAKKAAKSVHEKLKSLDELPKLLNLD-YSDFDVP-ENALYFLVLPSYDIDPP--LDYFLQWLEESAND  122 (601)
T ss_pred             ccceEEEEeccchHHHHHHHHHHHHHhcccchhhcCCC-CCccCCC-cceEEEEEecccCCCCc--HHHHHHHHHhhhhc
Confidence            34489999999999999999999999888889999999 7777888 66777777777689988  88899999764   


Q ss_pred             -cCcccccCCcEEEEEecCCcCh-hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhh
Q 006868           84 -SLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI  159 (628)
Q Consensus        84 -~~~~~~l~~~~~aVfGlGds~y-~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~  159 (628)
                       .++..+|+|.+|||||+||+.| +.||..++..|+++..|||.|++|+|++|.++.     .+++|...+++.|+.-
T Consensus       123 FRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~~-----~id~W~~~~~~~Lk~g  195 (601)
T KOG1160|consen  123 FRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDSA-----KIDEWTSLVAETLKDG  195 (601)
T ss_pred             cccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCccccccc-----cHHHHHHHHHHHHcCC
Confidence             4456679999999999999977 689999999999999999999999999998743     6779999999999653

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=99.75  E-value=1.8e-18  Score=174.28  Aligned_cols=169  Identities=15%  Similarity=0.126  Sum_probs=121.0

Q ss_pred             CCHHHHHHhcCC----------------------CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCccc-ccccHHhh
Q 006868          391 MPIDWLVQLVPP----------------------LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLA  447 (628)
Q Consensus       391 ~p~~~l~~~lp~----------------------~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~-G~~S~~L~  447 (628)
                      .|+|++...+|.                      ...|.|||+|.+ ...++++|.|.+         ... |.+|+||+
T Consensus        28 ~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~-~~~~~l~~~v~~---------~~~~G~~s~~l~   97 (235)
T cd06193          28 GPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFD-PEAGELDIDFVL---------HGDEGPASRWAA   97 (235)
T ss_pred             CCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEc-CCCCEEEEEEEe---------CCCCCchHHHHh
Confidence            588888777653                      346999999987 356889999853         234 89999999


Q ss_pred             CcCCCCCceEEEEeecCCCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHh
Q 006868          448 GLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH  527 (628)
Q Consensus       448 ~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~  527 (628)
                      ++++  ||+|.+.+|.|.|.++....++||||+||||||+++++++....      .+++++||+|+++|.++.+++   
T Consensus        98 ~l~~--Gd~v~v~gP~G~~~~~~~~~~~vlia~GtGi~p~~~il~~~~~~------~~~~~~~~~~~~~d~~~l~~~---  166 (235)
T cd06193          98 SAQP--GDTLGIAGPGGSFLPPPDADWYLLAGDETALPAIAAILEELPAD------ARGTALIEVPDAADEQPLPAP---  166 (235)
T ss_pred             hCCC--CCEEEEECCCCCCCCCCCcceEEEEeccchHHHHHHHHHhCCCC------CeEEEEEEECCHHHccccCCC---
Confidence            9999  99999999999998774457999999999999999999977542      579999999998765543321   


Q ss_pred             HhcCCCcccCCCCcEEEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          528 SLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       528 ~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                          ..+      +++.+.+++.. .......+...    .....++..+|+||++ .|++.+++.|.+
T Consensus       167 ----~~~------~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~vyicGp~-~mv~~v~~~l~~  219 (235)
T cd06193         167 ----AGV------EVTWLHRGGAE-AGELALLAVRA----LAPPAGDGYVWIAGEA-GAVRALRRHLRE  219 (235)
T ss_pred             ----CCc------EEEEEeCCCCC-cchhHHHHHhc----ccCCCCCeEEEEEccH-HHHHHHHHHHHH
Confidence                234      55555443332 21111110000    0001236799999998 999888877654

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

Probab=99.74  E-value=5.9e-18  Score=167.47  Aligned_cols=160  Identities=16%  Similarity=0.199  Sum_probs=122.0

Q ss_pred             CCCHHHHHHhcCCC----cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcC------CCCCceEEE
Q 006868          390 QMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD------PQQGIYIPA  459 (628)
Q Consensus       390 ~~p~~~l~~~lp~~----~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~------~~~G~~v~i  459 (628)
                      ..||||+...+|..    +.|+|||+|+|....+.++|+|+.          ..|..|.++..+.      .  |++|.+
T Consensus        25 ~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~----------~~G~~t~~~~~~~~~~~~~~--~~~v~v   92 (210)
T cd06186          25 WKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRA----------KKGFTTRLLRKALKSPGGGV--SLKVLV   92 (210)
T ss_pred             cCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEe----------cCChHHHHHHHHHhCcCCCc--eeEEEE
Confidence            46899998888865    689999999983225899999943          2388888887776      6  999999


Q ss_pred             EeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCC-CCCCCeEEEEcCCCCCc-cccHHHHHHhHhcCCCccc
Q 006868          460 WFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS-GPAAPIIFFFGCRNEDD-FLYRELWLSHSLNDGVFSE  536 (628)
Q Consensus       460 ~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~-~~~~~~~L~~G~R~~~d-~ly~~el~~~~~~~g~l~~  536 (628)
                      .+|.|.|..+ ....++||||+||||||++++++++...... ....++.|+|++|+.+| ..|.++|.+..+. .... 
T Consensus        93 ~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~-~~~~-  170 (210)
T cd06186          93 EGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFLDELRAAQEL-EVDG-  170 (210)
T ss_pred             ECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHhHHHHHHHHhhhhc-cCCc-
Confidence            9999988745 5567999999999999999999998875410 01278999999999997 5799999761111 1100 


Q ss_pred             CCCCcEEEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          537 AKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       537 ~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                          ++.+.+++                            +|+|||. .|.+++++...+
T Consensus       171 ----~~~i~~T~----------------------------v~~CGp~-~~~~~~~~~~~~  197 (210)
T cd06186         171 ----EIEIYVTR----------------------------VVVCGPP-GLVDDVRNAVAK  197 (210)
T ss_pred             ----eEEEEEee----------------------------EEEECch-hhccHHHHHHhh
Confidence                23333333                            8999997 999999887766

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.

>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional

Probab=99.73  E-value=1.7e-17  Score=179.62  Aligned_cols=143  Identities=16%  Similarity=0.110  Sum_probs=125.7

Q ss_pred             cCCCcEEEEEECCcchHHHHHHHHHHHHH--hCCCCcEEeeCCCCCccCC----CCCCeEEEEEecCCCCCCChhHHHHH
Q 006868            4 EKRNKLLILYASQTGNALDAAERIGRESE--RRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFW   77 (628)
Q Consensus         4 ~~~~~v~I~Y~S~tGnte~~A~~l~~~l~--~~g~~v~~~~l~~~~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~   77 (628)
                      ..+++|+|+|+|+||||+++|+.|++.+.  ..|++++++++.+.+.+++    .+++.+||++|||+.|.+ +.+..|+
T Consensus       245 ~~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~GspT~~~~~~-~~~~~~l  323 (394)
T PRK11921        245 YQENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILVGSSTINRGIL-SSTAAIL  323 (394)
T ss_pred             CCcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEEECCCcCcccc-HHHHHHH
Confidence            35788999999999999999999999998  6789999999998886665    469999999999977766 5699999


Q ss_pred             HHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868           78 RFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus        78 ~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                      +++...+     ++|+.+++||    +|+|+|.+.+.+.++|+.+|++.+.+...+.....+...+.+++|.++|.+.+
T Consensus       324 ~~l~~~~-----~~~K~~a~FG----sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~~~  393 (394)
T PRK11921        324 EEIKGLG-----FKNKKAAAFG----SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAESL  393 (394)
T ss_pred             HHhhccC-----cCCCEEEEEe----cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHHhh
Confidence            9987654     7899999999    59999999999999999999999998888888876667788899999987655

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.73  E-value=2.3e-17  Score=194.73  Aligned_cols=181  Identities=12%  Similarity=0.027  Sum_probs=131.8

Q ss_pred             CCCHHHHHHhcC-CCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEE-EEeecCCCC
Q 006868          390 QMPIDWLVQLVP-PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP-AWFQKGSLP  467 (628)
Q Consensus       390 ~~p~~~l~~~lp-~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~-i~~~~g~F~  467 (628)
                      ..||||+...++ +...|+|||+|.+ ...+.++|+|+.           .|..|.+|.++++  |+.|. +.+|.|+|.
T Consensus       677 ~~PGQFv~L~~~~~ge~rP~SIas~~-~~~g~i~l~Vk~-----------vG~~T~~L~~lk~--Gd~l~~I~GPlG~~f  742 (944)
T PRK12779        677 AQAGQFVRVLPWEKGELIPLTLADWD-AEKGTIDLVVQG-----------MGTSSLEINRMAI--GDAFSGIAGPLGRAS  742 (944)
T ss_pred             CCCCceEEEEeCCCCCEEeEEccCCC-CCCCEEEEEEEe-----------eccHHHHHhcCCC--cCEEeeeecCCCCCc
Confidence            359999887764 3345999999987 456889999843           3888999999999  99995 999999864


Q ss_pred             -CCC--CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHH---HHhHhcCCCcccCCCCc
Q 006868          468 -RPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELW---LSHSLNDGVFSEAKGGG  541 (628)
Q Consensus       468 -lp~--~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el---~~~~~~~g~l~~~~~~~  541 (628)
                       ++.  ...++||||+|+||||+++++++....+     .+++|+||+|+++|++|.+++   ++|.+.++..-     .
T Consensus       743 ~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g-----~~V~li~G~Rs~edl~~~del~~L~~la~~~~~~~-----~  812 (944)
T PRK12779        743 ELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG-----NHVTLISGFRAKEFLFWTGDDERVGKLKAEFGDQL-----D  812 (944)
T ss_pred             CCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC-----CCEEEEEEeCCHHHhhhHHHHHHHHHHHHHcCCCe-----E
Confidence             432  3469999999999999999999887654     589999999999898887664   55655545321     4


Q ss_pred             EEEEEecCCC--CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          542 FYVAFSRKQP--QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       542 ~~~a~Sr~~~--~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ++++ +.++.  .+++|++.+.+........-. ....||+|||+ .|++.|.+.|.+
T Consensus       813 v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~-~Mmkav~~~l~~  868 (944)
T PRK12779        813 VIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPP-LMMRAVSDLTKP  868 (944)
T ss_pred             EEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECCH-HHHHHHHHHHHH
Confidence            4433 33322  468888876554221100000 13679999998 999999887754

>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI

Probab=99.71  E-value=5.3e-17  Score=145.25  Aligned_cols=92  Identities=23%  Similarity=0.351  Sum_probs=76.7

Q ss_pred             EEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCccccc
Q 006868           11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWL   90 (628)
Q Consensus        11 I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l   90 (628)
                      |+|+|+||||++++       ++.|+++....+++.+..++ +++.+++ ++|||+|+.|+.+.+|++.+.+        
T Consensus         1 IvY~S~TGNte~fv-------~~lg~~~~~i~~~~~d~~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n--------   63 (125)
T TIGR00333         1 IYFSSKTGNVQRFV-------EKLGFQHIRIPVDETDDIHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN--------   63 (125)
T ss_pred             CEEEcccccHHHHH-------HHcCCCcEEeecCCcchhhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh--------
Confidence            78999999999994       34566666677776555455 6777766 9999999999999999987632        


Q ss_pred             CCcEEEEEecCCcCh-hHHHHHHHHHHHHHHh
Q 006868           91 EGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLD  121 (628)
Q Consensus        91 ~~~~~aVfGlGds~y-~~f~~a~~~l~~~L~~  121 (628)
                        +.++|||+||++| +.||.|++.+.+++..
T Consensus        64 --~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~   93 (125)
T TIGR00333        64 --LLRGVAASGNKVWGDNFALAGDVISRKLNV   93 (125)
T ss_pred             --cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence              7899999999999 7999999999999977

Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.

>PRK05569 flavodoxin; Provisional

Probab=99.71  E-value=7.2e-17  Score=149.53  Aligned_cols=138  Identities=19%  Similarity=0.175  Sum_probs=113.3

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCC-ChhHHHHHHHHHhcc
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDT-PDSMKVFWRFLLQKS   84 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~-p~~~~~F~~~L~~~~   84 (628)
                      |++++|+|+|.||||+++|+.|++.+.+.|..+++.++++.+..++.+++.|||++|||+.|.+ |+.+..|++.+....
T Consensus         1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~   80 (141)
T PRK05569          1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTP   80 (141)
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccC
Confidence            5689999999999999999999999999999999999999888888999999999999976665 479999999885433


Q ss_pred             CcccccCCcEEEEEecCCcChhHH-HHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHH
Q 006868           85 LSKQWLEGVRYAVFGLGDSGYQKF-NFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW  153 (628)
Q Consensus        85 ~~~~~l~~~~~aVfGlGds~y~~f-~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~  153 (628)
                           ++|+++++||.+    +|. +.+.+.+.+.|+..|++.+.+ ..+...+++...+.+.+|.++|+
T Consensus        81 -----~~~K~v~~f~t~----g~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~p~~~~~~~~~~~g~~l~  140 (141)
T PRK05569         81 -----NENKKCILFGSY----GWDNGEFMKLWKDRMKDYGFNVIGD-LAVNESPNKEELNSAKELGKKLA  140 (141)
T ss_pred             -----cCCCEEEEEeCC----CCCCCcHHHHHHHHHHHCCCeEeee-EEEccCCCHHHHHHHHHHHHHHh
Confidence                 679999999964    432 556788999999999998765 66665554445666677776654

>PRK05568 flavodoxin; Provisional

Probab=99.70  E-value=1.1e-16  Score=148.42  Aligned_cols=139  Identities=19%  Similarity=0.183  Sum_probs=114.1

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCC-hhHHHHHHHHHhcc
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP-DSMKVFWRFLLQKS   84 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p-~~~~~F~~~L~~~~   84 (628)
                      |++++|+|.|+||||+++|+.|++.+.+.|+.++++++.+.+..++.+++.|||++|||+.|.+| +.+..|++.+... 
T Consensus         1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~-   79 (142)
T PRK05568          1 MKKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISSL-   79 (142)
T ss_pred             CCeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhhh-
Confidence            56899999999999999999999999999999999999998888889999999999999777654 7899999987432 


Q ss_pred             CcccccCCcEEEEEecCCcChhHH-HHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHH
Q 006868           85 LSKQWLEGVRYAVFGLGDSGYQKF-NFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR  154 (628)
Q Consensus        85 ~~~~~l~~~~~aVfGlGds~y~~f-~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~  154 (628)
                           ++++++++||+    |+|- ..+.+.+.+.|+++|++.+.+...+...+++...+.+.+|.++|.+
T Consensus        80 -----~~~k~~~~f~t----~G~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~l~~~~~~g~~l~~  141 (142)
T PRK05568         80 -----VKGKKLVLFGS----YGWGDGEWMRDWVERMEGYGANLVNEGLIVNNTPEGEGIEKCKALGEALAK  141 (142)
T ss_pred             -----hCCCEEEEEEc----cCCCCChHHHHHHHHHHHCCCEEeCCcEEEecCCCHHHHHHHHHHHHHHHh
Confidence                 67999999996    3331 3457889999999999998876666665544466667777776643

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.70  E-value=4.9e-17  Score=193.55  Aligned_cols=170  Identities=13%  Similarity=0.129  Sum_probs=130.7

Q ss_pred             CCCHHHHHHhcCC-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHh-hCcCCCCCceE-EEEeecCCC
Q 006868          390 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYI-PAWFQKGSL  466 (628)
Q Consensus       390 ~~p~~~l~~~lp~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v-~i~~~~g~F  466 (628)
                      ..||||++..++. ...|+|||++.+ ...+.++|.|.+           .|..|.|| .++++  ||.| .+.+|.|.|
T Consensus        28 ~~PGQFV~l~~~~~~errplSIa~~~-~~~g~i~l~vk~-----------vG~~T~~L~~~lk~--Gd~l~~v~GPlG~~   93 (1006)
T PRK12775         28 AEPGHFVMLRLYEGAERIPLTVADFD-RKKGTITMVVQA-----------LGKTTREMMTKFKA--GDTFEDFVGPLGLP   93 (1006)
T ss_pred             CCCCeeEEEEeCCCCeeEEEEecCcC-CCCCEEEEEEEe-----------cCcHHHHHHhcCCC--CCEEeeeecCCCCC
Confidence            3699999888753 346999999987 356788888843           48999998 68999  9999 799999976


Q ss_pred             CCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868          467 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  546 (628)
Q Consensus       467 ~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~  546 (628)
                      .......++||||+|+||||+++++++....+     .+++++||+|++++++|.+||+++...           ++++ 
T Consensus        94 ~~~~~~~~vllVaGGiGIAPl~s~~r~l~~~g-----~~v~li~g~R~~~~l~~~del~~~~~~-----------~~v~-  156 (1006)
T PRK12775         94 QHIDKAGHVVLVGGGLGVAPVYPQLRAFKEAG-----ARTTGIIGFRNKDLVFWEDKFGKYCDD-----------LIVC-  156 (1006)
T ss_pred             CCCCCCCeEEEEEEhHHHHHHHHHHHHHHhCC-----CcEEEEEeCCChHHcccHHHHHhhcCc-----------EEEE-
Confidence            54433468999999999999999999877654     579999999999999999999876543           2222 


Q ss_pred             ecCCC--CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          547 SRKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       547 Sr~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      +.++.  .+++|++.+.+....     .....||+|||. .|++.|.+.+++
T Consensus       157 tddgs~G~~G~vt~~l~~~l~~-----~~~d~vy~CGP~-~Mm~av~~~~~~  202 (1006)
T PRK12775        157 TDDGSYGKPGFVTAALKEVCEK-----DKPDLVVAIGPL-PMMNACVETTRP  202 (1006)
T ss_pred             ECCCCCCCCCChHHHHHHHhcc-----CCCCEEEEECCH-HHHHHHHHHHHH
Confidence            22322  468888877654211     124589999998 999999887754

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes

Probab=99.69  E-value=3.3e-17  Score=144.55  Aligned_cols=104  Identities=23%  Similarity=0.333  Sum_probs=81.3

Q ss_pred             EEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCC-cccCCCCcEEEEEecCCC----
Q 006868          477 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGV-FSEAKGGGFYVAFSRKQP----  551 (628)
Q Consensus       477 mIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~-l~~~~~~~~~~a~Sr~~~----  551 (628)
                      |||+|||||||+++++++......   .+++||||+|+++|++|+++|+++.+.++. +      .++.+ ++.+.    
T Consensus         1 lIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~~~-~~~~~~~~~   70 (109)
T PF00175_consen    1 LIAGGTGIAPFLSMLRYLLERNDN---RKVTLFYGARTPEDLLFRDELEALAQEYPNRF------HVVYV-SSPDDGWDG   70 (109)
T ss_dssp             EEEEGGGGHHHHHHHHHHHHHTCT---SEEEEEEEESSGGGSTTHHHHHHHHHHSTTCE------EEEEE-TTTTSSTTS
T ss_pred             CeecceeHHHHHHHHHHHHHhCCC---CCEEEEEEEcccccccchhHHHHHHhhccccc------ccccc-cccccccCC
Confidence            899999999999999999987443   899999999999999999999999987443 3      33333 44332    


Q ss_pred             CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHH
Q 006868          552 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWS  592 (628)
Q Consensus       552 ~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~  592 (628)
                      .++||++.+.+.... ...-..++.||||||+ .|.++|++
T Consensus        71 ~~g~v~~~~~~~~~~-~~~~~~~~~v~iCGp~-~m~~~v~~  109 (109)
T PF00175_consen   71 FKGRVTDLLLEDLLP-EKIDPDDTHVYICGPP-PMMKAVRK  109 (109)
T ss_dssp             EESSHHHHHHHHHHH-HHHCTTTEEEEEEEEH-HHHHHHHH
T ss_pred             ceeehhHHHHHhhcc-cccCCCCCEEEEECCH-HHHHHhcC
Confidence            378999988665433 2222448999999998 99988864

Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....

>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional

Probab=99.69  E-value=1.2e-16  Score=176.34  Aligned_cols=142  Identities=15%  Similarity=0.102  Sum_probs=124.4

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhC--CCCcEEeeCCCCCccCCC----CCCeEEEEEecCCCCCCChhHHHHHH
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERR--GCPVVVRPVDDYDARCLP----EEDTVIFVVSTTGQGDTPDSMKVFWR   78 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~--g~~v~~~~l~~~~~~~l~----~~~~vi~~~sT~g~G~~p~~~~~F~~   78 (628)
                      .+++++|+|+|+|||||++|+.|++.+++.  |+++++.++++.+.+++.    +++.|||+||||++|.+| .+..|++
T Consensus       250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vilGspT~~~~~~p-~~~~fl~  328 (479)
T PRK05452        250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGSSTMNNVMMP-KIAGLLE  328 (479)
T ss_pred             CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEEECCccCCcchH-HHHHHHH
Confidence            568899999999999999999999999976  678899999998876654    589999999999665555 7999999


Q ss_pred             HHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868           79 FLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH  157 (628)
Q Consensus        79 ~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~  157 (628)
                      .+...+     ++|+.+++||    +|+|+|.+++.+.++|+.+|++.+ +...++..+++...+.+.++.++|.+++.
T Consensus       329 ~l~~~~-----l~gK~~~vFG----Sygw~g~a~~~~~~~l~~~g~~~~-~~l~~~~~P~ee~~~~~~~~g~~la~~~~  397 (479)
T PRK05452        329 EITGLR-----FRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFEMS-LSLKAKWRPDQDALELCREHGREIARQWA  397 (479)
T ss_pred             HhhccC-----cCCCEEEEEE----CCCcCcHHHHHHHHHHHHCCCEEe-ccEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence            986654     7899999999    689999999999999999999986 56888888776678888999999998886

>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed

Probab=99.58  E-value=1.2e-14  Score=132.42  Aligned_cols=125  Identities=15%  Similarity=0.257  Sum_probs=94.3

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCC----CCCChhHHHHHHHHHh
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQ----GDTPDSMKVFWRFLLQ   82 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~----G~~p~~~~~F~~~L~~   82 (628)
                      +.+.|+|.|.||||+++|++|...       ...+++++.  ..+...+.+++++||||.    |+.|+.+.+|++...+
T Consensus         1 ~~~~I~Y~S~TGNt~~f~~kl~~~-------~~~i~i~~~--~~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~n   71 (134)
T PRK03600          1 MMMLVYFSSKTGNTHRFVQKLGLP-------ATRIPINER--ERLEVDEPYILITPTYGGGGTAGAVPKQVIRFLNDEHN   71 (134)
T ss_pred             CcEEEEEECCChhHHHHHHHhCCc-------ceEEecCCC--ccccCCCCEEEEEeccCCCCcCCcccHHHHHHHhcccc
Confidence            357899999999999999988654       235666542  245567789999999999    6999999999887422


Q ss_pred             ccCcccccCCcEEEEEecCCcCh-hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHH
Q 006868           83 KSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR  154 (628)
Q Consensus        83 ~~~~~~~l~~~~~aVfGlGds~y-~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~  154 (628)
                              ....++|||+||++| ..||.|++.+.+++.      +--...++-+.++.+.+.+.+|++++|.
T Consensus        72 --------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~------vp~l~k~El~gt~~Dv~~~~~~~~~~~~  130 (134)
T PRK03600         72 --------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ------VPLLYRFELSGTNEDVENVRKGVEEFWQ  130 (134)
T ss_pred             --------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC------CCeEEEEecCCCHHHHHHHHHHHHHHHh
Confidence                    246899999999999 589999999999876      2222344444333356677888888865

>PRK06242 flavodoxin; Provisional

Probab=99.52  E-value=7.8e-14  Score=130.54  Aligned_cols=133  Identities=22%  Similarity=0.197  Sum_probs=102.0

Q ss_pred             CcEEEEEECC-cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868            7 NKLLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL   85 (628)
Q Consensus         7 ~~v~I~Y~S~-tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~   85 (628)
                      |+++|+|.|. ||||+++|+.|++.+.     ++++++.+....++.++|.|||++||| .|.+|+.++.|++.+..   
T Consensus         1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-----~~~~~i~~~~~~~~~~~d~ii~g~pvy-~~~~~~~~~~fl~~~~~---   71 (150)
T PRK06242          1 MKALIVYASVHHGNTEKIAKAIAEVLD-----AEVIDPGDVNPEDLSEYDLIGFGSGIY-FGKFHKSLLKLIEKLPP---   71 (150)
T ss_pred             CcEEEEEeCCCCCCHHHHHHHHHHhcC-----cEEecHHHCCcccHhHCCEEEEeCchh-cCCcCHHHHHHHHhhhh---
Confidence            5689999999 7999999999999883     567788777667888999999999999 79999999999987632   


Q ss_pred             cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeeccee---------------eeCCCCCCchhhHHHHHH
Q 006868           86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL---------------GDDQHPSGYEGALDPWMR  150 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~---------------~d~~~~~g~~~~~~~W~~  150 (628)
                          +.++++++||.+....+.   +.+.+.+.|+.+|++.+.....               ++..+++...+.+.+|.+
T Consensus        72 ----~~~k~~~~f~t~g~~~~~---~~~~l~~~l~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~d~~~~~~~gk  144 (150)
T PRK06242         72 ----VSGKKAFIFSTSGLPFLK---YHKALKKKLKEKGFEIVGEFSCKGFDTFGPFKLIGGINKGHPNEKDLENAKEFAE  144 (150)
T ss_pred             ----hcCCeEEEEECCCCCcch---HHHHHHHHHHHCCCEEEEEEecCCcccccchhhcCCccCCCcCHHHHHHHHHHHH
Confidence                468999999986554432   3789999999999998765321               122222224566677877


Q ss_pred             HHHHH
Q 006868          151 SLWRR  155 (628)
Q Consensus       151 ~l~~~  155 (628)
                      +|.+.
T Consensus       145 ~l~~~  149 (150)
T PRK06242        145 NLKKK  149 (150)
T ss_pred             HHhhc
Confidence            76543

>PRK02551 flavoprotein NrdI; Provisional

Probab=99.50  E-value=1.9e-13  Score=126.61  Aligned_cols=135  Identities=14%  Similarity=0.242  Sum_probs=90.0

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhC--CCCcEEeeCCCCCcc---CCCCCCeEEEEEecC-CCCCC---------C
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERR--GCPVVVRPVDDYDAR---CLPEEDTVIFVVSTT-GQGDT---------P   70 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~--g~~v~~~~l~~~~~~---~l~~~~~vi~~~sT~-g~G~~---------p   70 (628)
                      |+++.|+|+|.||||+++|++|...+.+.  +..+..+++.++..+   .+.....+|+++||| |.|.+         |
T Consensus         1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~p~vli~pTY~~gG~~~~~~~~~~vp   80 (154)
T PRK02551          1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETTDFFPETEPFVAFLPTYLEGGNGIDNGDVEILT   80 (154)
T ss_pred             CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccccccccCCCEEEEEeeecCCCCCcccCccccch
Confidence            46789999999999999999999876542  444445664444221   255667899999999 77754         4


Q ss_pred             hhHHHHHHHHHhccCcccccCCcEEEEEecCCcChh-HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHH
Q 006868           71 DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWM  149 (628)
Q Consensus        71 ~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~  149 (628)
                      +.+.+|+..   ..     ..+..++|||+||++|+ .||.+|+.+++.+   +...+.. .+.-.  ...+.+.+.+++
T Consensus        81 ~~v~dFL~~---~~-----N~~~~~gVigsGNrNfg~~F~~aa~~ia~~~---~vP~L~~-fEl~G--T~~Dv~~v~~~~  146 (154)
T PRK02551         81 TPLGDFIAY---HD-----NAKRCLGIIGSGNRNFNNQYCLTAKQYAKRF---GFPMLAD-FELRG--TPSDIERIAAII  146 (154)
T ss_pred             HHHHHHHcc---hh-----hhhheEEEEeecccHHHHHHHHHHHHHHHHc---CCCEEEE-eeccC--CHHHHHHHHHHH
Confidence            445555421   11     35689999999999997 8999999999765   5555543 22211  111344455555


Q ss_pred             HHHHH
Q 006868          150 RSLWR  154 (628)
Q Consensus       150 ~~l~~  154 (628)
                      .+++.
T Consensus       147 ~~~~~  151 (154)
T PRK02551        147 AELYA  151 (154)
T ss_pred             HHHHH
Confidence            55443

>PLN02292 ferric-chelate reductase

Probab=99.50  E-value=1.2e-13  Score=156.76  Aligned_cols=174  Identities=18%  Similarity=0.200  Sum_probs=123.6

Q ss_pred             CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCc-----eEEEE
Q 006868          390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGI-----YIPAW  460 (628)
Q Consensus       390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~-----~v~i~  460 (628)
                      ..|||++...+|.   .+.|+|||+|+|..+++.++++|+           ..|..|++|. .++.  |+     +|.+.
T Consensus       352 ~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK-----------~~G~~T~~L~~~l~~--gd~i~~~~V~Ve  418 (702)
T PLN02292        352 YSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIK-----------SQGKWSTKLYHMLSS--SDQIDRLAVSVE  418 (702)
T ss_pred             cCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEE-----------cCCchhHHHHHhCCC--CCccccceEEEE
Confidence            3589988777775   478999999998445688999984           3477788886 4677  77     45799


Q ss_pred             eecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHh-------Hhc
Q 006868          461 FQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSH-------SLN  530 (628)
Q Consensus       461 ~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~-------~~~  530 (628)
                      ||.|.+..+ ....+++|||+|+||||+++++++...+....  ...++.|+|++|+.+|.++.+++...       .+.
T Consensus       419 GPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~  498 (702)
T PLN02292        419 GPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSF  498 (702)
T ss_pred             CCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhc
Confidence            999987655 44579999999999999999999987653211  12689999999999999887765532       233


Q ss_pred             CCCcccCCCCcEEEEEecCCCCcc-chhhhHHHcHHHHHHHHh-----CCCEEEEeCCCCCCH
Q 006868          531 DGVFSEAKGGGFYVAFSRKQPQKV-YVQHKMLEQSQRIWNLLL-----SKASIYVAGSATKMP  587 (628)
Q Consensus       531 ~g~l~~~~~~~~~~a~Sr~~~~k~-yVqd~l~~~~~~v~~~l~-----~~~~iyvCG~~~~M~  587 (628)
                       .++      ++.+.++|+.+.+. |-+.    ..+.+...+.     +...+.+|||++.+-
T Consensus       499 -~~~------~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~w  550 (702)
T PLN02292        499 -IDI------QIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPNSWLW  550 (702)
T ss_pred             -CCc------eEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCCchHH
Confidence             344      78888888765321 1111    2222222221     367899999985543

>PLN02844 oxidoreductase/ferric-chelate reductase

Probab=99.49  E-value=1.1e-13  Score=157.46  Aligned_cols=175  Identities=18%  Similarity=0.181  Sum_probs=125.2

Q ss_pred             CCHHHHHHhcCCC---cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-C----cCCCCC------ce
Q 006868          391 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-G----LDPQQG------IY  456 (628)
Q Consensus       391 ~p~~~l~~~lp~~---~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~----l~~~~G------~~  456 (628)
                      .|||++...+|..   +.|+|||+|+|..+++.++++|++          .+|. |+.|. .    +++  |      .+
T Consensus       340 ~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~----------~gG~-T~~L~~~i~~~l~~--g~~~~~~~~  406 (722)
T PLN02844        340 APTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKC----------EGGW-TNSLYNKIQAELDS--ETNQMNCIP  406 (722)
T ss_pred             CCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEe----------CCCc-hHHHHHHHHhhccC--CCCcccceE
Confidence            5899988888754   689999999875567788888843          2333 44442 2    333  4      37


Q ss_pred             EEEEeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHh-----H
Q 006868          457 IPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSH-----S  528 (628)
Q Consensus       457 v~i~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~-----~  528 (628)
                      +.+.+|.|.|..+ ....+++|||+|||||||++++++....+...  ...++.|+|++|+.+|..|.+++...     .
T Consensus       407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~  486 (722)
T PLN02844        407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSS  486 (722)
T ss_pred             EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHH
Confidence            8899999998766 44579999999999999999999998643210  12679999999999999999998632     2


Q ss_pred             hcCCCcccCCCCcEEEEEecCCCCccchhhhHHHc--HHHHHHHHhCCCEEEEeCCCCCC
Q 006868          529 LNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQ--SQRIWNLLLSKASIYVAGSATKM  586 (628)
Q Consensus       529 ~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~--~~~v~~~l~~~~~iyvCG~~~~M  586 (628)
                      +. .++      +++...+|+......+++.+...  ...++ +=.+...+.+||+.+.+
T Consensus       487 ~~-~~l------kl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~~~l  538 (722)
T PLN02844        487 NQ-LNL------KLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLESFL  538 (722)
T ss_pred             Hh-cCc------eEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCCchH
Confidence            22 344      78888999877655677766652  12222 11236789999997543

>PLN02631 ferric-chelate reductase

Probab=99.49  E-value=7.2e-14  Score=158.15  Aligned_cols=143  Identities=19%  Similarity=0.235  Sum_probs=111.2

Q ss_pred             CCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCc--eEEEEeecC
Q 006868          391 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGI--YIPAWFQKG  464 (628)
Q Consensus       391 ~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~--~v~i~~~~g  464 (628)
                      .|||++...+|.   .+.|+|||+|+|..+++.++|+|+           +.|-.|++|.+ ++. .|+  +|.+.||.|
T Consensus       336 ~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK-----------~~Gg~T~~L~~~l~~-~g~~i~V~VeGPYG  403 (699)
T PLN02631        336 TPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIR-----------RQGSWTQKLYTHLSS-SIDSLEVSTEGPYG  403 (699)
T ss_pred             CCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEE-----------cCChHHHHHHHhhhc-CCCeeEEEEECCCC
Confidence            689998888875   467999999998445688999983           35788998864 532 145  677789999


Q ss_pred             CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHh------HhcCCCcc
Q 006868          465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSH------SLNDGVFS  535 (628)
Q Consensus       465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~------~~~~g~l~  535 (628)
                      .|..+ ....++||||+|+||||+++++++...+....  ..++++|+||+|+.+|.+|.||++.+      .++ -++ 
T Consensus       404 ~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~-~ni-  481 (699)
T PLN02631        404 PNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISR-LNL-  481 (699)
T ss_pred             CCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhc-Cce-
Confidence            87766 55678999999999999999999998653221  23589999999999999999999863      233 356 


Q ss_pred             cCCCCcEEEEEecCCCC
Q 006868          536 EAKGGGFYVAFSRKQPQ  552 (628)
Q Consensus       536 ~~~~~~~~~a~Sr~~~~  552 (628)
                           ++...+||+++.
T Consensus       482 -----~i~iyVTR~~~~  493 (699)
T PLN02631        482 -----RIEAYITREDKK  493 (699)
T ss_pred             -----EEEEEEcCCCCC
Confidence                 888899997553

>PRK11104 hemG protoporphyrinogen oxidase; Provisional

Probab=99.48  E-value=3e-13  Score=130.01  Aligned_cols=87  Identities=24%  Similarity=0.272  Sum_probs=78.9

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS   86 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~   86 (628)
                      |+++|+|+|.||||+++|+.|++.|.. |+.+.++++++.+..++.+||.||||+||| .|.+++.+..|++....    
T Consensus         1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~-~G~~~~~~~~fl~~~~~----   74 (177)
T PRK11104          1 MKTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIR-YGHFHSALYKFVKKHAT----   74 (177)
T ss_pred             CcEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccc-cCCcCHHHHHHHHHHHH----
Confidence            578999999999999999999999988 999999999988777888999999999999 89999999999876533    


Q ss_pred             ccccCCcEEEEEecC
Q 006868           87 KQWLEGVRYAVFGLG  101 (628)
Q Consensus        87 ~~~l~~~~~aVfGlG  101 (628)
                        .|+++++++|++|
T Consensus        75 --~l~~K~v~~F~v~   87 (177)
T PRK11104         75 --QLNQMPSAFFSVN   87 (177)
T ss_pred             --HhCCCeEEEEEec
Confidence              2889999999988

>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional

Probab=99.39  E-value=5.1e-12  Score=124.12  Aligned_cols=125  Identities=22%  Similarity=0.188  Sum_probs=99.3

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHh-CCCCcEEeeCCCCC--------------------ccCCCCCCeEEEEEecC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESER-RGCPVVVRPVDDYD--------------------ARCLPEEDTVIFVVSTT   64 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~-~g~~v~~~~l~~~~--------------------~~~l~~~~~vi~~~sT~   64 (628)
                      ||+|+|+|+|.+|||+++|+.+++.+++ .|.+++++++.+..                    .+++.++|.|||++|||
T Consensus         1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty   80 (200)
T PRK03767          1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTR   80 (200)
T ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEeccc
Confidence            4689999999999999999999999998 89999999885421                    34566899999999999


Q ss_pred             CCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeeccee
Q 006868           65 GQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL  132 (628)
Q Consensus        65 g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~  132 (628)
                       .|.+|+.++.|++++..... ...+.++.+++|+......+---.+.+.+...|..+|+..+.+...
T Consensus        81 -~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~~~~  146 (200)
T PRK03767         81 -FGNMAGQMRNFLDQTGGLWA-KGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGLPYA  146 (200)
T ss_pred             -CCCchHHHHHHHHHhccccc-cCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCCCCc
Confidence             99999999999999854422 2348899999999754443334455677777778999987754333

>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV

Probab=99.34  E-value=8.3e-12  Score=122.25  Aligned_cols=121  Identities=23%  Similarity=0.185  Sum_probs=98.4

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhC-CCCcEEeeCCCCC--------------------ccCCCCCCeEEEEEecCC
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERR-GCPVVVRPVDDYD--------------------ARCLPEEDTVIFVVSTTG   65 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~-g~~v~~~~l~~~~--------------------~~~l~~~~~vi~~~sT~g   65 (628)
                      .+|+|+|+|++|||+++|+.+++.+++. |.+++++++.+..                    ..++.++|.|||++||| 
T Consensus         1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty-   79 (197)
T TIGR01755         1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR-   79 (197)
T ss_pred             CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc-
Confidence            3699999999999999999999999875 9999999886532                    24556899999999999 


Q ss_pred             CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868           66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE  129 (628)
Q Consensus        66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~  129 (628)
                      .|.+++.++.|++++..... ...+.|+.+++|+......+-...+...+...|..+|+..+..
T Consensus        80 ~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~  142 (197)
T TIGR01755        80 FGNMASQMRNFLDQTGGLWA-SGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPL  142 (197)
T ss_pred             ccCccHHHHHHHHhcccccc-ccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCC
Confidence            89999999999999864421 2248899999999765555556666777888888999987754

This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.

>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]

Probab=99.33  E-value=4.9e-12  Score=132.54  Aligned_cols=137  Identities=18%  Similarity=0.190  Sum_probs=116.4

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC----CCCCeEEEEEecCCCCCCChhHHHHHHHHH
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLL   81 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~   81 (628)
                      ..+|.|+|.|++|||+.+|+.|++.|.+.|+.|.++++++.+.+++    .+++.+++++||+ ++++++.+..++-.+.
T Consensus       246 ~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~-~~~~~p~i~~~l~~v~  324 (388)
T COG0426         246 KGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTI-NGGAHPPIQTALGYVL  324 (388)
T ss_pred             cceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcc-cCCCCchHHHHHHHHH
Confidence            3479999999999999999999999999999999999998776554    5889999999999 7888889999998887


Q ss_pred             hccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHH
Q 006868           82 QKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL  152 (628)
Q Consensus        82 ~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l  152 (628)
                      ..+     .+++..+|||    +|+|-..|.+.+.++|+.+|.+...+..++...+.+...+.+++-.+++
T Consensus       325 ~~~-----~~~k~~~vfg----S~GW~g~av~~i~~~l~~~g~~~~~~~i~vk~~P~~~~l~~c~e~g~~l  386 (388)
T COG0426         325 ALA-----PKNKLAGVFG----SYGWSGEAVDLIEEKLKDLGFEFGFDGIEVKFRPTEEDLKKCEEAGRDL  386 (388)
T ss_pred             hcc-----CcCceEEEEe----ccCCCCcchHHHHHHHHhcCcEEeccceEEEecCCHHHHHHHHHHHHHh
Confidence            665     5678899999    7999999999999999999999888878888876544444444444443

>PRK07116 flavodoxin; Provisional

Probab=99.15  E-value=2e-10  Score=108.75  Aligned_cols=127  Identities=20%  Similarity=0.283  Sum_probs=87.9

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC-----------------------------CccCCCCCCe
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-----------------------------DARCLPEEDT   56 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~-----------------------------~~~~l~~~~~   56 (628)
                      ||+++|+|.|.||||+++|+.|++.+....+.  +.....+                             ...++..++.
T Consensus         2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~~~--i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~D~   79 (160)
T PRK07116          2 NNKTLVAYFSATGTTKKVAEKLAEVTGADLFE--IKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEYDV   79 (160)
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhcCCeEE--EeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhCCE
Confidence            78999999999999999999999998643222  2221100                             0225568999


Q ss_pred             EEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEec-CCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeC
Q 006868           57 VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDD  135 (628)
Q Consensus        57 vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGl-Gds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~  135 (628)
                      |||++|+| .|.+|+.++.|++.+        .+.++++++|++ |.+.+   +.+...+.+.+   +...+.+...++.
T Consensus        80 Iiig~Pv~-~~~~p~~v~~fl~~~--------~l~~k~v~~f~T~g~~~~---g~~~~~~~~~~---~~~~~~~~~~~~~  144 (160)
T PRK07116         80 IFLGFPIW-WYVAPRIINTFLESY--------DFSGKTVIPFATSGGSGI---GNAEKELKKSY---PDANWKEGRLLNG  144 (160)
T ss_pred             EEEECChh-ccccHHHHHHHHHhc--------CCCCCEEEEEEeCCCCCc---CcHHHHHHHHC---CcCccccCeeecC
Confidence            99999999 699999999998753        277899999998 55544   44455555544   3333444444443


Q ss_pred             CCCCCchhhHHHHHHHH
Q 006868          136 QHPSGYEGALDPWMRSL  152 (628)
Q Consensus       136 ~~~~g~~~~~~~W~~~l  152 (628)
                      + .  ..++++.|++++
T Consensus       145 ~-~--~~~~i~~wl~~~  158 (160)
T PRK07116        145 G-A--SKEEIKEWINKL  158 (160)
T ss_pred             C-C--cHHHHHHHHHHc
Confidence            2 1  366899998764

>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis

Probab=99.13  E-value=1.9e-10  Score=102.34  Aligned_cols=95  Identities=22%  Similarity=0.416  Sum_probs=65.4

Q ss_pred             EEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCC----CChhHHHHHHHHHhccCc
Q 006868           11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGD----TPDSMKVFWRFLLQKSLS   86 (628)
Q Consensus        11 I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~----~p~~~~~F~~~L~~~~~~   86 (628)
                      |+|.|.||||++++++|...+.     ..-+.+...+. ++.-.+..|++++|||.|+    .|....+|++.-.+.   
T Consensus         1 I~Y~S~tGNt~rFv~kL~~~~~-----~~~i~~~~~~~-~~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~~~~N~---   71 (122)
T PF07972_consen    1 IYYSSLTGNTRRFVEKLGLYAP-----AIRIPIREISP-DLEVDEPFVLITPTYGFGENDGGVPKQVIRFLENPDNR---   71 (122)
T ss_dssp             EEE--SSSHHHHHHHHH-S--S-----EEEE-SSCTTS-TS--SS-EEEEEE-BTTTBSSTSS-HHHHHHHHSHHHG---
T ss_pred             CEEECCCcCHHHHHHHHcccch-----hcccccccccc-cccCCCCEEEEecccCCCCCCCCCCHHHHHHHHHHHHH---
Confidence            7999999999999999887553     22333333222 3445567999999999999    999999998854333   


Q ss_pred             ccccCCcEEEEEecCCcChh-HHHHHHHHHHHHH
Q 006868           87 KQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRL  119 (628)
Q Consensus        87 ~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L  119 (628)
                           ....+|+|.||++|. .||.|++.+.+.+
T Consensus        72 -----~~l~GVigSGNrNfg~~f~~aa~~ia~ky  100 (122)
T PF07972_consen   72 -----KLLRGVIGSGNRNFGDNFCLAADKIAEKY  100 (122)
T ss_dssp             -----GGEEEEEEEE-GGGGGGTTHHHHHHHHHH
T ss_pred             -----hhheeEEecCCcHHHHHHHHHHHHHHHHc
Confidence                 367789999999997 7999999999776

The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.

>PF12724 Flavodoxin_5: Flavodoxin domain

Probab=99.13  E-value=7.9e-10  Score=102.66  Aligned_cols=86  Identities=33%  Similarity=0.453  Sum_probs=70.4

Q ss_pred             EEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccc
Q 006868           10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW   89 (628)
Q Consensus        10 ~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~   89 (628)
                      +|+|+|.||||+++|+.|++.|.+.+..+.+.++.. ...++.++|.|||++|+| .|.+|..+.+|++.+...      
T Consensus         1 LIvY~S~~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~-~~~~~~~yD~vi~gspiy-~g~~~~~~~~fi~~~~~~------   72 (143)
T PF12724_consen    1 LIVYFSKTGNTKKIAEWIAEKLGEEGELVDLEKVEE-DEPDLSDYDAVIFGSPIY-AGRIPGEMREFIKKNKDN------   72 (143)
T ss_pred             CEEEECCCchHHHHHHHHHHHHhhhccEEEHHhhhh-cccccccCCEEEEEEEEE-CCcCCHHHHHHHHHHHHH------
Confidence            599999999999999999999997754444444321 345788999999999999 799999999999987442      


Q ss_pred             cCCcEEEEEecCCc
Q 006868           90 LEGVRYAVFGLGDS  103 (628)
Q Consensus        90 l~~~~~aVfGlGds  103 (628)
                      ++++++++|.+|-.
T Consensus        73 l~~k~v~~f~~~~~   86 (143)
T PF12724_consen   73 LKNKKVALFSVGGS   86 (143)
T ss_pred             HcCCcEEEEEEeCC
Confidence            78899999998644

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]

Probab=99.13  E-value=2.2e-11  Score=119.06  Aligned_cols=80  Identities=21%  Similarity=0.303  Sum_probs=66.3

Q ss_pred             cceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCCCC----CCCCCEEEEeC
Q 006868          406 RAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPRP----PPSVPLILIGP  480 (628)
Q Consensus       406 R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~lp----~~~~piimIa~  480 (628)
                      |.||.|+......|.++|.|+.         .-.|+.|+|++ ++++  ||.|.++.|.|+|.+.    +.++|+++.|+
T Consensus       202 ~~~~~S~~~~t~rN~~R~sVr~---------~A~G~VS~~~H~~~KV--GD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~  270 (385)
T KOG3378|consen  202 REYSLSNRVDTCRNQFRISVRR---------VAGGVVSNFVHDNLKV--GDIVGVSPPAGNFVYKRSEENVNRPLLCFAG  270 (385)
T ss_pred             HHHHHhhhhhhhccceeEEEee---------hhchhhHHHhhccccc--cceeeccCCCccceeehhhhccCCceEEecC
Confidence            4445544433467899999943         46799999997 7999  9999999999999765    57799999999


Q ss_pred             CCChHHHHHHHHHHHH
Q 006868          481 GTGCAPFRGFVEERAI  496 (628)
Q Consensus       481 GtGIAPfrs~l~~~~~  496 (628)
                      |+||+|++++++....
T Consensus       271 GiGiTPLi~iiE~~~~  286 (385)
T KOG3378|consen  271 GIGITPLIPIIETALL  286 (385)
T ss_pred             CcCccccHHHHHHHHh
Confidence            9999999999998765

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=99.11  E-value=4.2e-10  Score=102.21  Aligned_cols=110  Identities=20%  Similarity=0.221  Sum_probs=87.9

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS   86 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~   86 (628)
                      |+++|+|+|.+|+|.++|+.|+.+|.+.|++|++.++.....-++.+++.||+++|-+ .|.......+|++.-...   
T Consensus         1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~-~~h~~~~~~~Fv~k~~e~---   76 (175)
T COG4635           1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIR-YGHFHEAVQSFVKKHAEA---   76 (175)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchh-hhhhHHHHHHHHHHHHHH---
Confidence            6799999999999999999999999999999999999987755788999999999999 899999999998875443   


Q ss_pred             ccccCCcEEEEEecCCcChhHH---HHHHHHHHHHHHhcCC
Q 006868           87 KQWLEGVRYAVFGLGDSGYQKF---NFVAKKLDNRLLDLGA  124 (628)
Q Consensus        87 ~~~l~~~~~aVfGlGds~y~~f---~~a~~~l~~~L~~lGa  124 (628)
                         |.++..|+|.++=+ |..+   -.+-..+++.|.+.-.
T Consensus        77 ---L~~kP~A~f~vnl~-a~k~k~~~e~~~yv~kfl~~~~W  113 (175)
T COG4635          77 ---LSTKPSAFFSVNLT-ARKEKRTPETNSYVRKFLMKSPW  113 (175)
T ss_pred             ---HhcCCceEEEeehh-hcccccCchHHHHHHHHHhcCCC
Confidence               78888899887532 2222   2233355555554333

>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]

Probab=99.04  E-value=1.9e-09  Score=95.68  Aligned_cols=129  Identities=16%  Similarity=0.291  Sum_probs=90.8

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCC----CCChhHHHHHHHHHh
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG----DTPDSMKVFWRFLLQ   82 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G----~~p~~~~~F~~~L~~   82 (628)
                      +.+.|+|.|.||||.++++++.  +.+  +.+.+....    +.+.-.+..|++++|||.|    ..|....+|+..-  
T Consensus         1 ~~~~v~f~S~SgNt~RFv~kL~--~~~--~~I~~~~~~----~~~~v~epyvlitpTyg~G~~~~~Vp~~vi~FLn~~--   70 (141)
T COG1780           1 MMLLVYFSSLSGNTHRFVEKLG--LPA--VRIPLNREE----DPIEVDEPYVLITPTYGGGGTVGAVPKQVIRFLNNE--   70 (141)
T ss_pred             CceEEEEEecCccHHHHHHHhC--CCc--eeccccccc----CCccCCCCeEEEeccccCCCccCccCHHHHHHhccc--
Confidence            3478999999999999999987  111  111122111    1245556799999999999    9999999997531  


Q ss_pred             ccCcccccCCcEEEEEecCCcChh-HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868           83 KSLSKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH  157 (628)
Q Consensus        83 ~~~~~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~  157 (628)
                       +     ...+.-+|.|.|+++|+ .||.|++.+.+++   |.-.++..-+. .  ...+-+.+.+|+.++|+...
T Consensus        71 -~-----Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~FEL~-G--T~~Dv~~v~~~v~~~~~~~~  134 (141)
T COG1780          71 -H-----NRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRFELL-G--TAEDVAAVRKGVTEFWKRAP  134 (141)
T ss_pred             -c-----chhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEEecc-C--CHHHHHHHHHHHHHHHHhCC
Confidence             1     34578899999999997 7999999998765   55555443221 1  11256788889998887653

>PF12641 Flavodoxin_3: Flavodoxin domain

Probab=99.03  E-value=1.8e-09  Score=101.58  Aligned_cols=108  Identities=23%  Similarity=0.338  Sum_probs=79.8

Q ss_pred             EEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccc
Q 006868           10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW   89 (628)
Q Consensus        10 ~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~   89 (628)
                      +|+|.|.||||+++|+.|++.|..    ..++++++.... +.++|+|++|++++ .|.+++.+++|++.          
T Consensus         1 lIvYsS~TGNTkkvA~aI~~~l~~----~~~~~~~~~~~~-~~~yD~i~lG~w~d-~G~~d~~~~~fl~~----------   64 (160)
T PF12641_consen    1 LIVYSSRTGNTKKVAEAIAEALGA----KDIVSVEEPPED-LEDYDLIFLGFWID-KGTPDKDMKEFLKK----------   64 (160)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC----ceeEeccccccC-CCCCCEEEEEcCcc-CCCCCHHHHHHHHH----------
Confidence            589999999999999999998864    478888887643 88999999999999 79999999999886          


Q ss_pred             cCCcEEEEEecCCc--ChhHHHHHHHHHHHHHHhcCCeEeecceeeeC
Q 006868           90 LEGVRYAVFGLGDS--GYQKFNFVAKKLDNRLLDLGATAVVERGLGDD  135 (628)
Q Consensus        90 l~~~~~aVfGlGds--~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~  135 (628)
                      |+|+++++||..-.  +=.++....+.+...+.+ + ..+.....|..
T Consensus        65 l~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~-~-~~~lg~f~CqG  110 (160)
T PF12641_consen   65 LKGKKVALFGTAGAGPDSEYAKKILKNVEALLPK-G-NEILGTFMCQG  110 (160)
T ss_pred             ccCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc-C-CeecceEEeCC
Confidence            45788999997311  112455555555555544 3 33433344443

>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1

Probab=98.73  E-value=3.2e-08  Score=92.62  Aligned_cols=119  Identities=26%  Similarity=0.294  Sum_probs=95.0

Q ss_pred             CcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCC---------------------ccCCCCCCeEEEEEec
Q 006868            7 NKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYD---------------------ARCLPEEDTVIFVVST   63 (628)
Q Consensus         7 ~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~---------------------~~~l~~~~~vi~~~sT   63 (628)
                      |+|+|++||..  |||+.+|+.+.+.+++.|++++++++.++.                     .+.+.+.|.+||++|+
T Consensus         1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~   80 (152)
T PF03358_consen    1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPV   80 (152)
T ss_dssp             -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEE
T ss_pred             CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecE
Confidence            68999999985  999999999999999999999999999861                     1123478999999999


Q ss_pred             CCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868           64 TGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE  129 (628)
Q Consensus        64 ~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~  129 (628)
                      | .|.+|..++.|++++..  .....+.++.+++++.|.+.... ..+...+...|..+|+..+..
T Consensus        81 y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~~  142 (152)
T PF03358_consen   81 Y-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVPS  142 (152)
T ss_dssp             B-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEECC
T ss_pred             E-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcCC
Confidence            9 99999999999999963  11224889999999887554433 335678888888999987754

5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....

>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A

Probab=98.54  E-value=3e-07  Score=86.48  Aligned_cols=123  Identities=24%  Similarity=0.388  Sum_probs=73.2

Q ss_pred             cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCC---CCC-----------------------------ccCCCCCC
Q 006868            8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD---DYD-----------------------------ARCLPEED   55 (628)
Q Consensus         8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~---~~~-----------------------------~~~l~~~~   55 (628)
                      |++|+|-|.||||+++|+.|++.+.     +.++.+.   .++                             ..++.+||
T Consensus         1 K~LVvYyS~tGnT~~vA~~Ia~~~g-----adi~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD   75 (156)
T PF12682_consen    1 KTLVVYYSRTGNTKKVAEKIAEKTG-----ADIFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYD   75 (156)
T ss_dssp             -EEEEE--SSSHHHHHHHHHHHCCT------EEEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-S
T ss_pred             CEEEEEECCCchHHHHHHHHHHHHC-----CCEEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCC
Confidence            5799999999999999999998664     2222221   111                             11445899


Q ss_pred             eEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEec-CCcChhHHHHHHHHHHHHHHhcCCeEeecceeee
Q 006868           56 TVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGD  134 (628)
Q Consensus        56 ~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGl-Gds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d  134 (628)
                      .|++|+|++ .|.+|..+..|++..   +     ++|+.++.|.+ |.+.   ++.+.+.+.+.+.  +++ +.+...+.
T Consensus        76 ~I~lG~PvW-~~~~~~pv~tFL~~~---~-----~~gK~v~~F~T~ggs~---~~~~~~~l~~~~~--~a~-i~~g~~~~  140 (156)
T PF12682_consen   76 TIFLGTPVW-WGTPPPPVRTFLEQY---D-----FSGKTVIPFCTSGGSG---FGNSLEDLKKLCP--GAT-ILEGLAIN  140 (156)
T ss_dssp             EEEEEEEEE-TTEE-CHHHHHHHCT---T-----TTTSEEEEEEE-SS-----CHHHHHHHHHH-T--TSE-E---EE--
T ss_pred             EEEEechHH-cCCCCHHHHHHHHhc---C-----CCCCcEEEEEeeCCCC---hhHHHHHHHHHCC--CCE-eecCeEEe
Confidence            999999999 899999999998742   2     78999999965 3333   3344455554332  343 44544443


Q ss_pred             CCCCCCchhhHHHHHHHH
Q 006868          135 DQHPSGYEGALDPWMRSL  152 (628)
Q Consensus       135 ~~~~~g~~~~~~~W~~~l  152 (628)
                      ...-  .++++..|+++|
T Consensus       141 ~~~~--~~~~i~~Wl~~i  156 (156)
T PF12682_consen  141 RGSV--SEEEIKEWLKKI  156 (156)
T ss_dssp             -S-----HHHHHHHHHHT
T ss_pred             CCCc--CHHHHHHHHHhC
Confidence            2211  567899998864

>PRK10569 NAD(P)H-dependent FMN reductase; Provisional

Probab=98.48  E-value=2.8e-06  Score=82.66  Aligned_cols=116  Identities=16%  Similarity=0.152  Sum_probs=93.8

Q ss_pred             CcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccC-----------------CCCCCeEEEEEecCCCC
Q 006868            7 NKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDARC-----------------LPEEDTVIFVVSTTGQG   67 (628)
Q Consensus         7 ~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~-----------------l~~~~~vi~~~sT~g~G   67 (628)
                      |+|+++.||-  .++|.++++.+.+.+.+.|.+++++++.+++..+                 +.+.|.+||++|.| .|
T Consensus         1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~~   79 (191)
T PRK10569          1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY-KA   79 (191)
T ss_pred             CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-CC
Confidence            5799999998  4899999999999999999999999887765422                 23679999999999 99


Q ss_pred             CCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868           68 DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE  129 (628)
Q Consensus        68 ~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~  129 (628)
                      .+|.-++.|++|+..     ..+.|+.+++++.| ...++.-..-..+...|..+||..+..
T Consensus        80 s~pg~LKn~iD~l~~-----~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~~~  135 (191)
T PRK10569         80 SFSGALKTLLDLLPE-----RALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEILH  135 (191)
T ss_pred             CCCHHHHHHHHhCCh-----hhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeecCc
Confidence            999999999999832     34889999999998 445544433356778888999986543

>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins

Probab=98.46  E-value=2.7e-07  Score=86.61  Aligned_cols=72  Identities=15%  Similarity=0.263  Sum_probs=48.5

Q ss_pred             CEEEEeCCCChHHHHHHHHHHHHhcC--CCCCCCeEEEEcCCCCCcc-ccHHHHHHhHhcC--CCcccCCCCcEEEEEec
Q 006868          474 PLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNEDDF-LYRELWLSHSLND--GVFSEAKGGGFYVAFSR  548 (628)
Q Consensus       474 piimIa~GtGIAPfrs~l~~~~~~~~--~~~~~~~~L~~G~R~~~d~-ly~~el~~~~~~~--g~l~~~~~~~~~~a~Sr  548 (628)
                      .++|||||+||+|+.+++++......  .....++.|+|-+|+.+++ .|.++|.++....  ..+      ++.+.+++
T Consensus         3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~------~~~iyvT~   76 (156)
T PF08030_consen    3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNV------EVHIYVTR   76 (156)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSE------EEEEEETT
T ss_pred             EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccc------eEEEEEcC
Confidence            58999999999999999999976543  1135789999999999954 5675665554331  355      67777777


Q ss_pred             CCC
Q 006868          549 KQP  551 (628)
Q Consensus       549 ~~~  551 (628)
                      +..
T Consensus        77 ~~~   79 (156)
T PF08030_consen   77 ESS   79 (156)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            543

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family

Probab=98.42  E-value=4.7e-06  Score=79.79  Aligned_cols=116  Identities=19%  Similarity=0.222  Sum_probs=91.3

Q ss_pred             cEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC-----------------CCCCeEEEEEecCCCCC
Q 006868            8 KLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-----------------PEEDTVIFVVSTTGQGD   68 (628)
Q Consensus         8 ~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l-----------------~~~~~vi~~~sT~g~G~   68 (628)
                      +|+++.||-  .|+|.++++.+.+.+.+.|..++.+++.+++..++                 .+.|.+||++|.| +|.
T Consensus         1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~~s   79 (171)
T TIGR03567         1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-KAS   79 (171)
T ss_pred             CEEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-cCC
Confidence            588999995  78999999999999998898888888877553222                 2679999999999 999


Q ss_pred             CChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc
Q 006868           69 TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER  130 (628)
Q Consensus        69 ~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~  130 (628)
                      +|...+.|++++..     ..+.++.+++++.| ..+..+...-..+...|..+|+..+.+.
T Consensus        80 ip~~LK~~iD~~~~-----~~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~~~~  135 (171)
T TIGR03567        80 YSGVLKALLDLLPQ-----RALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHILPG  135 (171)
T ss_pred             CCHHHHHHHHhCCh-----hhhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccccce
Confidence            99999999999842     23889999998887 4455544333468888999999654443

Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain

Probab=98.39  E-value=8e-08  Score=83.10  Aligned_cols=66  Identities=23%  Similarity=0.290  Sum_probs=55.8

Q ss_pred             CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCC
Q 006868          390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  466 (628)
Q Consensus       390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F  466 (628)
                      ..|||++...++.   ...|+|||+|.| ...+.++|+|+.         .+.|..|+||+++++  ||.|.+.+|.|.|
T Consensus        30 ~~pGQ~v~v~~~~~~~~~~R~yS~~s~~-~~~~~~~~~ik~---------~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f   97 (99)
T PF00970_consen   30 FKPGQFVSVRVPINGKQVSRPYSPASSP-DDKGYLEFAIKR---------YPNGRVSRYLHQLKP--GDEVEIRGPYGNF   97 (99)
T ss_dssp             STTT-EEEEEEEETTEEEEEEEEBCSST-TSSSEEEEEEEE---------CTTSHHHHHHHTSCT--TSEEEEEEEESSE
T ss_pred             cCcceEEEEEEccCCcceecceeEeeec-CCCCcEEEEEEe---------ccCCHHHHHHHhCCC--CCEEEEEEccccc
Confidence            3689999888882   246999999999 567799999944         478999999999999  9999999999998


Q ss_pred             C
Q 006868          467 P  467 (628)
Q Consensus       467 ~  467 (628)
                      .
T Consensus        98 ~   98 (99)
T PF00970_consen   98 T   98 (99)
T ss_dssp             E
T ss_pred             C
Confidence            5

To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.35  E-value=8.7e-07  Score=103.41  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=82.0

Q ss_pred             CHhhHhhhCCCC---CCCHHHHHHhcCC-----C-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC
Q 006868          378 TVLEVLEDFPSV---QMPIDWLVQLVPP-----L-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG  448 (628)
Q Consensus       378 ~~~d~l~~f~~~---~~p~~~l~~~lp~-----~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~  448 (628)
                      +++.+....|.+   ..||||++...+.     + .||++||++.+ ...+.++|+|.+|           |.+|.+|++
T Consensus       804 ~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD-~e~g~It~i~rvV-----------GkgT~~Ls~  871 (1028)
T PRK06567        804 KTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDID-VEKGLISFIVFEV-----------GKSTSLCKT  871 (1028)
T ss_pred             CEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccC-CCCCEEEEEEEEE-----------ChHHHHHhc
Confidence            444444445531   3599999887742     3 67899999986 4568899999776           999999999


Q ss_pred             cCCCCCceEEEEeecC-CCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEc
Q 006868          449 LDPQQGIYIPAWFQKG-SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFG  511 (628)
Q Consensus       449 l~~~~G~~v~i~~~~g-~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G  511 (628)
                      +++  |+.|.+.||.| .|.++. ...+++||+|+|+||   +.++....+     .++..|.+
T Consensus       872 l~~--Gd~v~v~GPLG~pF~i~~-~k~vLLVgGGVGiAp---Lak~Lk~~G-----~~V~~~~~  924 (1028)
T PRK06567        872 LSE--NEKVVLMGPTGSPLEIPQ-NKKIVIVDFEVGNIG---LLKVLKENN-----NEVIFVTY  924 (1028)
T ss_pred             CCC--CCEEEEEcccCCCCCCCC-CCeEEEEEccccHHH---HHHHHHHCC-----CeEEEEEc
Confidence            999  99999999998 487763 357999999999997   444444433     44555544

>PRK00170 azoreductase; Reviewed

Probab=98.24  E-value=2e-05  Score=77.37  Aligned_cols=147  Identities=10%  Similarity=0.056  Sum_probs=101.3

Q ss_pred             CCcEEEEEECC--c-chHHHHHHHHHHHHHhC--CCCcEEeeCCCCCc--------------------------------
Q 006868            6 RNKLLILYASQ--T-GNALDAAERIGRESERR--GCPVVVRPVDDYDA--------------------------------   48 (628)
Q Consensus         6 ~~~v~I~Y~S~--t-Gnte~~A~~l~~~l~~~--g~~v~~~~l~~~~~--------------------------------   48 (628)
                      ||+|+|++||-  . |+|.++|+.+.+.+++.  |..++++++.+.+.                                
T Consensus         1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l   80 (201)
T PRK00170          1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL   80 (201)
T ss_pred             CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence            68899999996  3 89999999999999988  88899999865432                                


Q ss_pred             -cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc--------CcccccCCcEEEEEecCCcCh--hHHHHHHHHHHH
Q 006868           49 -RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS--------LSKQWLEGVRYAVFGLGDSGY--QKFNFVAKKLDN  117 (628)
Q Consensus        49 -~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~--------~~~~~l~~~~~aVfGlGds~y--~~f~~a~~~l~~  117 (628)
                       +++.+.|.|||++|.| .+.+|.-++.|++++....        .+...++|+++.++......+  ..+..+...+..
T Consensus        81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~  159 (201)
T PRK00170         81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT  159 (201)
T ss_pred             HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence             1134679999999999 9999999999999975321        112347899998888632222  122445666777


Q ss_pred             HHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868          118 RLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus       118 ~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                      .|.-+|++.+.. ..+.....  ..+.-+.|.++....+
T Consensus       160 ~~~~~G~~~~~~-~~~~g~~~--~~~~~~~~~~~a~~~~  195 (201)
T PRK00170        160 FLGFIGITDVEF-VFAEGHNY--GPEKAAKIISAAKAAA  195 (201)
T ss_pred             HHHhcCCCceEE-EEEecccC--CchHHHHHHHHHHHHH
Confidence            888899885543 23222211  2233455665554444

>PRK06934 flavodoxin; Provisional

Probab=98.20  E-value=8.9e-06  Score=80.31  Aligned_cols=135  Identities=16%  Similarity=0.168  Sum_probs=86.4

Q ss_pred             cCCCcEEEEEECCc------------------------chHHHHHHHHHHHHHhCCCCcEEeeC--CCC-----------
Q 006868            4 EKRNKLLILYASQT------------------------GNALDAAERIGRESERRGCPVVVRPV--DDY-----------   46 (628)
Q Consensus         4 ~~~~~v~I~Y~S~t------------------------Gnte~~A~~l~~~l~~~g~~v~~~~l--~~~-----------   46 (628)
                      ....+++|+|-|.+                        |||+++|+.|++.+...=++++..+.  +++           
T Consensus        33 ~~~~k~Lv~yfs~~~~~~~~~~~~~~~~s~~~~~~~~~GnTk~vAe~Ia~~~gaDl~eI~~~~~Y~~~yd~~~~~a~~E~  112 (221)
T PRK06934         33 RNARRVLIVYFSQPEDVKLEGVDGVSGASILQKNGEVLGSTQYVAQIIQEETGGDLFRIETVKPYPRQHDPLLKYAEQEV  112 (221)
T ss_pred             ccCCceEEEEEeccCCcccccccccccccccccCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCCCCchhhhHHHHhh
Confidence            35678999999988                        89999999999987532222222211  011           


Q ss_pred             ----C------ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEec-CCcChhHHHHHHHHH
Q 006868           47 ----D------ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKL  115 (628)
Q Consensus        47 ----~------~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGl-Gds~y~~f~~a~~~l  115 (628)
                          .      ..++.+||.|+|+.|.+ -|.+|.-++.|++..   .     ++|+.++.|.. |-+..   ..+.+.+
T Consensus       113 ~~~~~P~L~~~~~dl~~YD~I~IG~PIW-wg~~P~~V~tFLe~~---d-----~~GK~I~pF~T~ggsg~---g~s~~~i  180 (221)
T PRK06934        113 KEGGRPEMREKIQNLADYDQIFIGYPIW-WYKMPMVMYSFFEQH---D-----FSGKTLIPFTTHGGSRF---SDSLREI  180 (221)
T ss_pred             hcCCCHHHHHHHHhHHhCCEEEEEcchh-hccccHHHHHHHHhc---C-----CCCCEEEEEEecCCCCc---cchHHHH
Confidence                1      13455899999999999 899999999998754   2     78999999976 22333   3334444


Q ss_pred             HHHHHhcCCeEeecceeeeCC--CCCCchhhHHHHHHHH
Q 006868          116 DNRLLDLGATAVVERGLGDDQ--HPSGYEGALDPWMRSL  152 (628)
Q Consensus       116 ~~~L~~lGa~~v~~~~~~d~~--~~~g~~~~~~~W~~~l  152 (628)
                      .+.+.  +++.+.+...+...  .+...++++..|++++
T Consensus       181 ~~l~~--~a~~v~~Gl~i~~~~~~~~~~~~~I~~Wl~~l  217 (221)
T PRK06934        181 KRLQP--NAQLVTQGLAISRNDVTDDDTPKEIINWLNTL  217 (221)
T ss_pred             HHHcC--CcceeccceeeecCcccccchHHHHHHHHHHc
Confidence            43322  44344444333221  1112467899998764

>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.20  E-value=4.5e-06  Score=95.71  Aligned_cols=125  Identities=20%  Similarity=0.322  Sum_probs=87.6

Q ss_pred             CCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcC----C--CC----Cce
Q 006868          391 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLD----P--QQ----GIY  456 (628)
Q Consensus       391 ~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~----~--~~----G~~  456 (628)
                      -|||++...+|.   ++..+|||+|+|  +++.+.+.|+..           |--|.-|. .+.    +  .+    .-+
T Consensus       383 ~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~  449 (646)
T KOG0039|consen  383 KPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPK  449 (646)
T ss_pred             CCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCce
Confidence            479999888885   589999999999  788999999653           44444442 111    1  01    346


Q ss_pred             EEEEeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC-------------CCCCeEEEEcCCCCCccc-cH
Q 006868          457 IPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-------------PAAPIIFFFGCRNEDDFL-YR  521 (628)
Q Consensus       457 v~i~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~-------------~~~~~~L~~G~R~~~d~l-y~  521 (628)
                      +.+.||.|.=.-+ ..-..++|||+|.|++||.+++++...+...+             ..+++..+|-||...++. +.
T Consensus       450 i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~  529 (646)
T KOG0039|consen  450 ILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFK  529 (646)
T ss_pred             EEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHH
Confidence            8889998853333 33346799999999999999999998654221             246677777788877653 55


Q ss_pred             HHHHHhH
Q 006868          522 ELWLSHS  528 (628)
Q Consensus       522 ~el~~~~  528 (628)
                      +.+.+..
T Consensus       530 ~~l~~v~  536 (646)
T KOG0039|consen  530 GLLTEVE  536 (646)
T ss_pred             HHHHHHH
Confidence            5555554

>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily

Probab=98.15  E-value=1.9e-05  Score=75.78  Aligned_cols=115  Identities=16%  Similarity=0.125  Sum_probs=87.0

Q ss_pred             cEEEEEECC--cchHHHHHHHHHHHHH-hCCCCcEEeeCCCCCc-------------------cCCCCCCeEEEEEecCC
Q 006868            8 KLLILYASQ--TGNALDAAERIGRESE-RRGCPVVVRPVDDYDA-------------------RCLPEEDTVIFVVSTTG   65 (628)
Q Consensus         8 ~v~I~Y~S~--tGnte~~A~~l~~~l~-~~g~~v~~~~l~~~~~-------------------~~l~~~~~vi~~~sT~g   65 (628)
                      +|+++.||.  .|+|..+|+.+.+.+. +.|.+++++++.++.+                   +.+.+.|.+||++|.| 
T Consensus         1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-   79 (174)
T TIGR03566         1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY-   79 (174)
T ss_pred             CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC-
Confidence            589999998  5999999999999986 5688888888866521                   0123789999999999 


Q ss_pred             CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868           66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE  129 (628)
Q Consensus        66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~  129 (628)
                      +|.+|..++.|++++..     ..+.|+++++++.|..... ...+-..+...|..+|+..+..
T Consensus        80 ~~s~~~~LKn~lD~~~~-----~~l~~K~~~~v~~~g~~~~-~~~~~~~l~~~~~~l~~~~~~~  137 (174)
T TIGR03566        80 RGSYTGLFKHLFDLVDP-----NALIGKPVLLAATGGSERH-ALMVEHQLRPLFGFFQALTLPT  137 (174)
T ss_pred             cCcCcHHHHHHHHhcCH-----hHhCCCEEEEEEecCCccc-hHHHHHHHHHHHHHhCcccccc
Confidence            99999999999998743     2388999999998754332 1123345667777788775533

Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.

>PRK01355 azoreductase; Reviewed

Probab=98.13  E-value=5.5e-05  Score=74.27  Aligned_cols=152  Identities=11%  Similarity=0.129  Sum_probs=103.5

Q ss_pred             CCcEEEEEECCc----chHHHHHHHHHHHHHhC--CCCcEEeeCCCCCcc-----------------------CCCCCCe
Q 006868            6 RNKLLILYASQT----GNALDAAERIGRESERR--GCPVVVRPVDDYDAR-----------------------CLPEEDT   56 (628)
Q Consensus         6 ~~~v~I~Y~S~t----Gnte~~A~~l~~~l~~~--g~~v~~~~l~~~~~~-----------------------~l~~~~~   56 (628)
                      |++|+|+.||-.    |+|..+|+.+.+.+++.  |.+++.+++.+....                       .+.+.|.
T Consensus         1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~   80 (199)
T PRK01355          1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK   80 (199)
T ss_pred             CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence            689999999984    89999999999999874  577888888664431                       1226799


Q ss_pred             EEEEEecCCCCCCChhHHHHHHHHHhccC-----------cccccCCcEEEEEecCCcChh--HHHHHHHHHHHHHHhcC
Q 006868           57 VIFVVSTTGQGDTPDSMKVFWRFLLQKSL-----------SKQWLEGVRYAVFGLGDSGYQ--KFNFVAKKLDNRLLDLG  123 (628)
Q Consensus        57 vi~~~sT~g~G~~p~~~~~F~~~L~~~~~-----------~~~~l~~~~~aVfGlGds~y~--~f~~a~~~l~~~L~~lG  123 (628)
                      |||++|.| .+.+|..++.|++++.....           +...+.++++.|+........  .+..+...+...+.-+|
T Consensus        81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G  159 (199)
T PRK01355         81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG  159 (199)
T ss_pred             EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence            99999999 99999999999999854310           113477888877655432221  13445677888888899


Q ss_pred             CeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHh
Q 006868          124 ATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ  158 (628)
Q Consensus       124 a~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~  158 (628)
                      ++.+............-..+...+|+++-.+.+.+
T Consensus       160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~  194 (199)
T PRK01355        160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIE  194 (199)
T ss_pred             CCceeEEEEecccCCccccccHHHHHHHHHHHHHH
Confidence            98664433322221100113366777766666554

>PRK09739 hypothetical protein; Provisional

Probab=98.09  E-value=5e-05  Score=74.56  Aligned_cols=151  Identities=15%  Similarity=0.085  Sum_probs=100.2

Q ss_pred             CCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc---------------------------cCCCCCCe
Q 006868            6 RNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDA---------------------------RCLPEEDT   56 (628)
Q Consensus         6 ~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~---------------------------~~l~~~~~   56 (628)
                      ||+|+|++||-  .|+|..+++.+.+.+.+.|.+++++++.+...                           +.+.+.|.
T Consensus         3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~   82 (199)
T PRK09739          3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDA   82 (199)
T ss_pred             CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCE
Confidence            88999999997  57899999999999999998888888765321                           12337899


Q ss_pred             EEEEEecCCCCCCChhHHHHHHHHHhccCc---ccccCCcEEEEEecCCcChhHH-----HH-HHHHHH-HHHHhcCCeE
Q 006868           57 VIFVVSTTGQGDTPDSMKVFWRFLLQKSLS---KQWLEGVRYAVFGLGDSGYQKF-----NF-VAKKLD-NRLLDLGATA  126 (628)
Q Consensus        57 vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~---~~~l~~~~~aVfGlGds~y~~f-----~~-a~~~l~-~~L~~lGa~~  126 (628)
                      |||++|.| .+.+|.-.+.|++++......   ...+.+++..++.+....+..|     .. +...+. ..+.-+|.+.
T Consensus        83 iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~~  161 (199)
T PRK09739         83 LVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGIED  161 (199)
T ss_pred             EEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCccc
Confidence            99999999 999999999999987533211   1247788887776533344433     22 223444 4445578765


Q ss_pred             eecceeeeCCCC---CCchhhHHHHHHHHHHHHH
Q 006868          127 VVERGLGDDQHP---SGYEGALDPWMRSLWRRLH  157 (628)
Q Consensus       127 v~~~~~~d~~~~---~g~~~~~~~W~~~l~~~l~  157 (628)
                      +...........   ....+..+.|.++..+...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~  195 (199)
T PRK09739        162 SDVTFLYNTLVFDGEELHASHYQSLLSQAREMVD  195 (199)
T ss_pred             cceEEEecccccccccCCHHHHHHHHHHHHHHHH
Confidence            433322222100   1135567788887666553

>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]

Probab=98.02  E-value=1.9e-05  Score=78.00  Aligned_cols=120  Identities=23%  Similarity=0.092  Sum_probs=89.4

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc----------------------cC----CCCCCeEEE
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA----------------------RC----LPEEDTVIF   59 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~----------------------~~----l~~~~~vi~   59 (628)
                      +..|.+.|-| +|||+.+++.+.+.+++.|.+++++.+.+.+.                      .+    +.++|.+||
T Consensus         3 i~~I~gs~r~-~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~   81 (207)
T COG0655           3 ILGINGSPRS-NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIF   81 (207)
T ss_pred             eeEEEecCCC-CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEE
Confidence            4566777777 89999999999999999999999998886521                      11    345799999


Q ss_pred             EEecCCCCCCChhHHHHHHH-HHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868           60 VVSTTGQGDTPDSMKVFWRF-LLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV  128 (628)
Q Consensus        60 ~~sT~g~G~~p~~~~~F~~~-L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~  128 (628)
                      ++||| .|.++..++.|++. ...... ...+.++..++|..+-+.-..-..+...+...+...|...+.
T Consensus        82 gsPvy-~g~vsa~~K~fiDR~~~~~~~-~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v~  149 (207)
T COG0655          82 GSPVY-FGNVSAQMKAFIDRSTGPLWA-PGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVVG  149 (207)
T ss_pred             eCCee-cCCchHHHHHHHhhcchhhcc-cchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEec
Confidence            99999 99999999999998 332222 245888888888776544332224556777777777776553

>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold

Probab=97.93  E-value=0.00011  Score=72.05  Aligned_cols=148  Identities=18%  Similarity=0.177  Sum_probs=107.5

Q ss_pred             CcEEEEEECCcc---hHHHHHHHHHHHHHhCC-CCcEEeeCCCC-------------------C--------ccCCCCCC
Q 006868            7 NKLLILYASQTG---NALDAAERIGRESERRG-CPVVVRPVDDY-------------------D--------ARCLPEED   55 (628)
Q Consensus         7 ~~v~I~Y~S~tG---nte~~A~~l~~~l~~~g-~~v~~~~l~~~-------------------~--------~~~l~~~~   55 (628)
                      |+|+|++||-.+   ++.++++.+.+.+++.| .++++++|...                   .        .+.+...|
T Consensus         1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD   80 (199)
T PF02525_consen    1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWAD   80 (199)
T ss_dssp             EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHcC
Confidence            689999999987   58999999999999999 88999999874                   0        13445789


Q ss_pred             eEEEEEecCCCCCCChhHHHHHHHHHhccC----------cccccCCcEEEEEec-CCcC--hh-------HHHHHHHHH
Q 006868           56 TVIFVVSTTGQGDTPDSMKVFWRFLLQKSL----------SKQWLEGVRYAVFGL-GDSG--YQ-------KFNFVAKKL  115 (628)
Q Consensus        56 ~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~----------~~~~l~~~~~aVfGl-Gds~--y~-------~f~~a~~~l  115 (628)
                      .|||++|.| .+.+|.-++.|++.+.....          ....|.|+++.++-. |...  |.       .+..+...+
T Consensus        81 ~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~  159 (199)
T PF02525_consen   81 HIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYL  159 (199)
T ss_dssp             EEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHH
T ss_pred             cceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHHH
Confidence            999999999 99999999999998744322          134688988887654 4442  22       345566668


Q ss_pred             HHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868          116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus       116 ~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                      ...++-+|++.+...........+ .++.++++++++-+.|
T Consensus       160 ~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  199 (199)
T PF02525_consen  160 RGILKFCGIKDVESFSFEGVDNPD-REEALEKALERAAEHL  199 (199)
T ss_dssp             HHHHHHTTEEEEEEEEEESTTTCC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCceeeEEEEeCCCCCC-hHHHHHHHHHHHHhhC
Confidence            888889999988665443433222 3677888888877654

The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....

>PRK13556 azoreductase; Provisional

Probab=97.83  E-value=0.00041  Score=68.55  Aligned_cols=148  Identities=11%  Similarity=0.121  Sum_probs=101.8

Q ss_pred             CCcEEEEEECC----cchHHHHHHHHHHHHHhC--CCCcEEeeCCCCCc-------------------------------
Q 006868            6 RNKLLILYASQ----TGNALDAAERIGRESERR--GCPVVVRPVDDYDA-------------------------------   48 (628)
Q Consensus         6 ~~~v~I~Y~S~----tGnte~~A~~l~~~l~~~--g~~v~~~~l~~~~~-------------------------------   48 (628)
                      |++|+|+.+|-    .++|.++++.+.+.+.+.  |.+|+++++.+.+.                               
T Consensus         1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (208)
T PRK13556          1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA   80 (208)
T ss_pred             CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence            67899999996    478999999999999875  77888888863211                               


Q ss_pred             ----cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcCh-----hHHHHH
Q 006868           49 ----RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGY-----QKFNFV  111 (628)
Q Consensus        49 ----~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~y-----~~f~~a  111 (628)
                          .++.+.|.|||++|-| ++.+|.-.+.+++++.....        +.+.+.++++.|+...-..|     ..+..+
T Consensus        81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~  159 (208)
T PRK13556         81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA  159 (208)
T ss_pred             HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence                0122679999999999 99999999999999876421        12358899999987633345     234445


Q ss_pred             HHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868          112 AKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH  157 (628)
Q Consensus       112 ~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~  157 (628)
                      ...+...|.-+|++.+- ...+....  ...+..+.+.++....+.
T Consensus       160 ~~~l~~il~~~G~~~~~-~v~~~~~~--~~~~~~~~~~~~a~~~~~  202 (208)
T PRK13556        160 VKYVASMMGFFGVTNME-TVVIEGHN--QFPDKAEEIITAGLEEAA  202 (208)
T ss_pred             HHHHHHHHHhcCCCcee-EEEEehhh--cChhHHHHHHHHHHHHHH
Confidence            56788888889988653 34443221  123334455554444443

>TIGR02690 resist_ArsH arsenical resistance protein ArsH

Probab=97.63  E-value=0.00083  Score=66.55  Aligned_cols=122  Identities=14%  Similarity=0.031  Sum_probs=92.3

Q ss_pred             cCCCcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCccC---------------CCCCCeEEEEEecCCC
Q 006868            4 EKRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDARC---------------LPEEDTVIFVVSTTGQ   66 (628)
Q Consensus         4 ~~~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~---------------l~~~~~vi~~~sT~g~   66 (628)
                      +.+++|+++.||.-  =++..+|+.+.+.+.+.|++++++++.+++.-+               +...|.+||++|-| +
T Consensus        24 ~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY-n  102 (219)
T TIGR02690        24 PHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPER-H  102 (219)
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc-c
Confidence            45789999999874  356789999999998789999999887654211               12689999999999 9


Q ss_pred             CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868           67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV  128 (628)
Q Consensus        67 G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~  128 (628)
                      |.+|...+.+++|+....-+...+.+|.++|+|.. .... --.+...+...|..+|+..+-
T Consensus       103 ~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaS-gg~~-g~ra~~~LR~vl~~l~a~v~p  162 (219)
T TIGR02690       103 GAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVS-GGSQ-SFNAVNILRRLGRWMRMPTIP  162 (219)
T ss_pred             cCcCHHHHHHHHhcccCcccccccCCCcEEEEEeC-CcHh-HHHHHHHHHHHHHHCCCcccc
Confidence            99999999999999653211124889999999853 1111 234568888889899987653

Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.

>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]

Probab=97.52  E-value=0.00086  Score=67.64  Aligned_cols=165  Identities=16%  Similarity=0.201  Sum_probs=107.7

Q ss_pred             CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCCCCCCCEEEEeCCC
Q 006868          403 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT  482 (628)
Q Consensus       403 ~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~Gt  482 (628)
                      ...|.|||.+-. ...+++.|-|.+        +...|.+|.|-.+.++  ||+|.+.+|.|.+..+....-++|||==|
T Consensus        85 ~~~R~YTiR~~d-~~~~e~~vDfVl--------H~~~gpas~WA~~a~~--GD~l~i~GP~g~~~p~~~~~~~lLigDet  153 (265)
T COG2375          85 PPQRTYTIRAVD-AAAGELDVDFVL--------HGEGGPASRWARTAQP--GDTLTIMGPRGSLVPPEAADWYLLIGDET  153 (265)
T ss_pred             CCcccceeeeec-ccccEEEEEEEE--------cCCCCcchhhHhhCCC--CCEEEEeCCCCCCCCCCCcceEEEecccc
Confidence            368999998653 344555555433        2367999999999999  99999999999977665566899999999


Q ss_pred             ChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhHHH
Q 006868          483 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLE  562 (628)
Q Consensus       483 GIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~  562 (628)
                      ++-.+.++|++.-..      .+...|.-.++..|..   +   +... +.+      ++.... |++..  +.| ++..
T Consensus       154 AlPAIa~iLE~lp~~------~~~~a~lev~d~ad~~---~---l~~~-~~l------~~~Wl~-r~~~~--~~~-ll~~  210 (265)
T COG2375         154 ALPAIARILETLPAD------TPAEAFLEVDDAADRD---E---LPSP-DDL------ELEWLA-RDDAP--TEQ-LLAA  210 (265)
T ss_pred             chHHHHHHHHhCCCC------CceEEEEEeCChHHhh---c---cCCC-Cce------eEEEec-CCCcc--chH-HHHH
Confidence            999999999987553      3457788888777652   2   2222 444      444443 33321  211 2222


Q ss_pred             cHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHH
Q 006868          563 QSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDS  608 (628)
Q Consensus       563 ~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~  608 (628)
                      ...+.  .+.. +.++||.|-. .+.+.    +++.|.++.|++...
T Consensus       211 a~~~~--~~P~~~~~vwiagE~-~~v~~----~Rk~L~~e~g~dk~~  250 (265)
T COG2375         211 ALAQA--ALPAGDYYVWIAGEA-SAVKA----IRKFLRNERGFDKSR  250 (265)
T ss_pred             HHhcc--cCCCCceEEEEeccH-HHHHH----HHHHHhhhcCCCHHH
Confidence            21110  1122 4799999987 66554    455555566776543

>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional

Probab=97.16  E-value=0.014  Score=56.29  Aligned_cols=152  Identities=16%  Similarity=0.147  Sum_probs=97.6

Q ss_pred             cCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc----------CCCCCCeEEEEEecCCCCCCChhH
Q 006868            4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR----------CLPEEDTVIFVVSTTGQGDTPDSM   73 (628)
Q Consensus         4 ~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~----------~l~~~~~vi~~~sT~g~G~~p~~~   73 (628)
                      +.||+++|++++-.+.. ..+++....+.+.+..+++.++...-+.          .|...|.|||..|.| ...+|.-+
T Consensus         3 ~~~~kiLiI~aHP~~~~-S~~n~~l~~~~~~~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa~L   80 (184)
T PRK04930          3 SQPPKVLLLYAHPESQD-SVANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPALL   80 (184)
T ss_pred             CCCCEEEEEECCCCccc-CHHHHHHHHHHHcCCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcHHH
Confidence            35789999999998652 3344444444444567888888664221          234789999999999 89999999


Q ss_pred             HHHHHHHHhccCc----ccccCCcEEEEEe-cCCc--ChhH--HHH-----HHHHHHHHHHhcCCeEeecceeeeCCCCC
Q 006868           74 KVFWRFLLQKSLS----KQWLEGVRYAVFG-LGDS--GYQK--FNF-----VAKKLDNRLLDLGATAVVERGLGDDQHPS  139 (628)
Q Consensus        74 ~~F~~~L~~~~~~----~~~l~~~~~aVfG-lGds--~y~~--f~~-----a~~~l~~~L~~lGa~~v~~~~~~d~~~~~  139 (628)
                      +.+++........    ...++|+++.++- .|..  .|..  ++.     .-.-+...+.-+|.+.+-+....+...  
T Consensus        81 K~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~--  158 (184)
T PRK04930         81 KEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWARR--  158 (184)
T ss_pred             HHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCC--
Confidence            9999887653221    1248899888864 3443  2321  221     223334445567988776655444432  


Q ss_pred             CchhhHHHHHHHHHHHHHhh
Q 006868          140 GYEGALDPWMRSLWRRLHQI  159 (628)
Q Consensus       140 g~~~~~~~W~~~l~~~l~~~  159 (628)
                      ..+++.++|+++..+.|...
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~  178 (184)
T PRK04930        159 QSPEELASHARAYGDWLANP  178 (184)
T ss_pred             CCHHHHHHHHHHHHHHHhhh
Confidence            24567888888877777543

>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]

Probab=97.10  E-value=0.0012  Score=60.99  Aligned_cols=127  Identities=23%  Similarity=0.206  Sum_probs=87.1

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC---------------------CccCCCCCCeEEEEEecC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---------------------DARCLPEEDTVIFVVSTT   64 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~---------------------~~~~l~~~~~vi~~~sT~   64 (628)
                      |.+|.|+|-|.+|.-+.+|+.+.+.++..|-+.+++.+.+.                     +++.|.++|.++|+.||-
T Consensus         1 ~~kv~iv~ys~yghv~~lAe~~kkGie~a~geA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PTR   80 (203)
T KOG3135|consen    1 MPKVAIVIYSTYGHVAKLAEAEKKGIESAGGEATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPTR   80 (203)
T ss_pred             CceEEEEEEEcccHHHHHHHHHHhhhhccCCeeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeeccccc
Confidence            46899999999999999999999999877657777665542                     233455899999999999


Q ss_pred             CCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeC
Q 006868           65 GQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDD  135 (628)
Q Consensus        65 g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~  135 (628)
                       .|.+|..++.||+.--.. -....|.|+..++|=.+-+.=+-=-..+..--..|..+|.- +.|++.-+.
T Consensus        81 -fG~~~AQ~kaF~D~TggL-W~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGmi-fVPlGYkn~  148 (203)
T KOG3135|consen   81 -FGNMPAQWKAFWDSTGGL-WAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGMI-FVPLGYKNF  148 (203)
T ss_pred             -ccCcHHHHHHHHhccCch-hhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcceE-EEecccchh
Confidence             899999999999851110 01234889999998654321111111123333456677754 457766543

>PRK13555 azoreductase; Provisional

Probab=97.01  E-value=0.017  Score=57.04  Aligned_cols=121  Identities=17%  Similarity=0.173  Sum_probs=87.9

Q ss_pred             CCcEEEEEECCc----chHHHHHHHHHHHHHhCC--CCcEEeeCCCCCc-------------------------------
Q 006868            6 RNKLLILYASQT----GNALDAAERIGRESERRG--CPVVVRPVDDYDA-------------------------------   48 (628)
Q Consensus         6 ~~~v~I~Y~S~t----Gnte~~A~~l~~~l~~~g--~~v~~~~l~~~~~-------------------------------   48 (628)
                      |++++++++|-.    -.+.++|+.+.+.+++.+  ..|+..||-+.+.                               
T Consensus         1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~   80 (208)
T PRK13555          1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV   80 (208)
T ss_pred             CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence            678999999943    568899999999998776  6788888754211                               


Q ss_pred             ----cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc--------CcccccCCcEEEEEecCCcChhH-----HHHH
Q 006868           49 ----RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS--------LSKQWLEGVRYAVFGLGDSGYQK-----FNFV  111 (628)
Q Consensus        49 ----~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~--------~~~~~l~~~~~aVfGlGds~y~~-----f~~a  111 (628)
                          +++...|.|||++|-| ++.+|.-.+.|++++....        .+.+.++|++..|++.....|..     ....
T Consensus        81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~  159 (208)
T PRK13555         81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA  159 (208)
T ss_pred             HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence                0122579999999999 9999999999999987541        12245889999999773333532     1223


Q ss_pred             HHHHHHHHHhcCCeEe
Q 006868          112 AKKLDNRLLDLGATAV  127 (628)
Q Consensus       112 ~~~l~~~L~~lGa~~v  127 (628)
                      ...+...|.-+|.+.+
T Consensus       160 ~~yl~~il~~~Gi~~v  175 (208)
T PRK13555        160 VNYVTTVLGFWGITNP  175 (208)
T ss_pred             HHHHHHHHHhcCCCce
Confidence            4677778888898744

>COG0431 Predicted flavoprotein [General function prediction only]

Probab=95.95  E-value=0.19  Score=48.64  Aligned_cols=116  Identities=22%  Similarity=0.204  Sum_probs=81.8

Q ss_pred             CcEEEEEECCc--chHHHHHHHHHHHHHhCCCC-cEEeeCC----CCCcc--C-----------CCCCCeEEEEEecCCC
Q 006868            7 NKLLILYASQT--GNALDAAERIGRESERRGCP-VVVRPVD----DYDAR--C-----------LPEEDTVIFVVSTTGQ   66 (628)
Q Consensus         7 ~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~-v~~~~l~----~~~~~--~-----------l~~~~~vi~~~sT~g~   66 (628)
                      |+|++++||..  --+..+|+.+.+.+...+.. +...+++    +.+.+  .           +...|.+||+||.| +
T Consensus         1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY-n   79 (184)
T COG0431           1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY-N   79 (184)
T ss_pred             CeEEEEeccCcccchHHHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc-C
Confidence            57999999976  44678899999998877643 2222221    11111  1           23689999999999 9


Q ss_pred             CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868           67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE  129 (628)
Q Consensus        67 G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~  129 (628)
                      |..|.-.+..++||...     .+.++.+++++.+-.... .-.+...+...|..+|+..+..
T Consensus        80 ~s~pg~lKnaiD~l~~~-----~~~~Kpv~~~~~s~g~~~-~~~a~~~Lr~vl~~~~~~~~~~  136 (184)
T COG0431          80 GSYPGALKNAIDWLSRE-----ALGGKPVLLLGTSGGGAG-GLRAQNQLRPVLSFLGARVIPA  136 (184)
T ss_pred             CCCCHHHHHHHHhCCHh-----HhCCCcEEEEecCCCchh-HHHHHHHHHHHHHhcCceeccc
Confidence            99999999999998654     388999888886533322 2234577778888888876644

>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional

Probab=94.75  E-value=0.66  Score=44.53  Aligned_cols=145  Identities=17%  Similarity=0.190  Sum_probs=90.6

Q ss_pred             EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc----------CCCCCCeEEEEEecCCCCCCChhHHHHHH
Q 006868            9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR----------CLPEEDTVIFVVSTTGQGDTPDSMKVFWR   78 (628)
Q Consensus         9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~----------~l~~~~~vi~~~sT~g~G~~p~~~~~F~~   78 (628)
                      |+|+++.-......+-+.|.+.+.+. ..|++.+|.+..+.          .|...|.|||..|-| ...+|.-.+.+++
T Consensus         2 iLvi~aHP~~~~S~~n~al~~~~~~~-~~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~wiD   79 (176)
T PRK00871          2 ILIIYAHPYPHHSHANKRMLEQARTL-EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLWID   79 (176)
T ss_pred             EEEEEcCCCCccChHHHHHHHHHHhc-CCeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHHHH
Confidence            89999998876555666666666643 35888887653321          234789999999999 8999999999998


Q ss_pred             HHHhccC----cccccCCcEE-EEEecCCc--Chh-----HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHH
Q 006868           79 FLLQKSL----SKQWLEGVRY-AVFGLGDS--GYQ-----KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALD  146 (628)
Q Consensus        79 ~L~~~~~----~~~~l~~~~~-aVfGlGds--~y~-----~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~  146 (628)
                      ..-....    ....++|+++ .++..|..  .|.     .+.....-+...+.-+|++.+-+........  -.+++++
T Consensus        80 ~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~--~~~~~~~  157 (176)
T PRK00871         80 KVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFI--CDDETLE  157 (176)
T ss_pred             HHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeecc--CCHHHHH
Confidence            7654322    1234788876 44555654  332     1233345556666678999776654322211  1244555


Q ss_pred             HHHHHHHHHHH
Q 006868          147 PWMRSLWRRLH  157 (628)
Q Consensus       147 ~W~~~l~~~l~  157 (628)
                      +.+++..+.|.
T Consensus       158 ~~~~~~~~~L~  168 (176)
T PRK00871        158 GQARHYKQRLL  168 (176)
T ss_pred             HHHHHHHHHHH
Confidence            55555555543

>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]

Probab=93.05  E-value=1.6  Score=42.34  Aligned_cols=150  Identities=11%  Similarity=0.092  Sum_probs=97.0

Q ss_pred             CcEEEEEECCc-chHHHHHHHHHHHHHhCCCCcEEeeCCC-------------CC------ccCCCCCCeEEEEEecCCC
Q 006868            7 NKLLILYASQT-GNALDAAERIGRESERRGCPVVVRPVDD-------------YD------ARCLPEEDTVIFVVSTTGQ   66 (628)
Q Consensus         7 ~~v~I~Y~S~t-Gnte~~A~~l~~~l~~~g~~v~~~~l~~-------------~~------~~~l~~~~~vi~~~sT~g~   66 (628)
                      |+|+|+||--- .-+...++.+.+.+.+.|+++...++..             +.      .+.|...|.|||.-|.| =
T Consensus         1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw-W   79 (189)
T COG2249           1 MKILIIYAHPNESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW-W   79 (189)
T ss_pred             CcEEEEEeCchhhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch-h
Confidence            67999999986 5556666666667766666554333211             11      11234789999999999 8


Q ss_pred             CCCChhHHHHHHHHHhccC----cc----cccCCcEEEEEecCCcChhHHHHHH---------HHHHHHHHhcCCeEeec
Q 006868           67 GDTPDSMKVFWRFLLQKSL----SK----QWLEGVRYAVFGLGDSGYQKFNFVA---------KKLDNRLLDLGATAVVE  129 (628)
Q Consensus        67 G~~p~~~~~F~~~L~~~~~----~~----~~l~~~~~aVfGlGds~y~~f~~a~---------~~l~~~L~~lGa~~v~~  129 (628)
                      +..|.-.+.+++..-....    ..    +.|.|+++.++.+-...-..|...+         ..+.-.+.-+|...+-+
T Consensus        80 ~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~  159 (189)
T COG2249          80 YSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWLPP  159 (189)
T ss_pred             ccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccccc
Confidence            8899999999988654421    11    4588998888776433222222222         22334456678777666


Q ss_pred             ceeeeCCCCCCchhhHHHHHHHHHHHHHhh
Q 006868          130 RGLGDDQHPSGYEGALDPWMRSLWRRLHQI  159 (628)
Q Consensus       130 ~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~  159 (628)
                      .........  .++....|.+++.+.+.+.
T Consensus       160 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~  187 (189)
T COG2249         160 FTFYGADVI--DDETRAAYLERYRAHLKEI  187 (189)
T ss_pred             eeEeecccC--CHHHHHHHHHHHHHHHHhh
Confidence            655555432  6789999999988887654

>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins

Probab=92.74  E-value=0.087  Score=47.01  Aligned_cols=52  Identities=15%  Similarity=0.291  Sum_probs=30.9

Q ss_pred             cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCC
Q 006868          404 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  466 (628)
Q Consensus       404 ~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F  466 (628)
                      ..|.|||.+.. ...+++.|-|.+.        ...|.+|.|..+.++  ||.|.+.+|.|.|
T Consensus        66 ~~R~YTvR~~d-~~~~~l~iDfv~H--------g~~Gpas~WA~~A~p--Gd~v~v~gP~g~~  117 (117)
T PF08021_consen   66 VMRTYTVRRFD-PETGELDIDFVLH--------GDEGPASRWARSARP--GDRVGVTGPRGSF  117 (117)
T ss_dssp             EEEEEE--EEE-TT--EEEEEEE----------SS--HHHHHHHH--T--T-EEEEEEEE---
T ss_pred             CCCCcCEeeEc-CCCCEEEEEEEEC--------CCCCchHHHHhhCCC--CCEEEEeCCCCCC
Confidence            68999999875 3455666655332        334999999999999  9999999999887

This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.

>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245

Probab=91.28  E-value=0.033  Score=48.66  Aligned_cols=34  Identities=26%  Similarity=0.524  Sum_probs=0.0

Q ss_pred             CCHHHHHHhcCCC-----cccceeeccCCCCCCCeEEEEEE
Q 006868          391 MPIDWLVQLVPPL-----KTRAFSISSSPLAHPNQVHLTVS  426 (628)
Q Consensus       391 ~p~~~l~~~lp~~-----~~R~YSIaSsp~~~~~~i~l~V~  426 (628)
                      -|||++...+|.+     +..+|||+|+|  .++.+.|+|+
T Consensus        31 ~pGq~v~l~~p~~s~~~~q~HPFTIas~~--~~~~i~l~ik   69 (105)
T PF08022_consen   31 KPGQYVFLSFPSISKWFWQWHPFTIASSP--EDNSITLIIK   69 (105)
T ss_dssp             -----------------------------------------
T ss_pred             CCceEEEEEEcCcCcCcccccccEeeccC--CCCEEEEEEE
Confidence            5899999999864     56699999998  4788998884

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases

Probab=89.10  E-value=10  Score=36.68  Aligned_cols=117  Identities=16%  Similarity=0.137  Sum_probs=69.3

Q ss_pred             CCcEEEE----EECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeE-EEEEecCCCCC---CChhHHHHH
Q 006868            6 RNKLLIL----YASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTV-IFVVSTTGQGD---TPDSMKVFW   77 (628)
Q Consensus         6 ~~~v~I~----Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~v-i~~~sT~g~G~---~p~~~~~F~   77 (628)
                      |++|.|+    +-+.+|--|.+|+.|+..+.+.|+++++....+........+..+ ++-.++-..|.   ..-++..++
T Consensus         1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~   80 (185)
T PF09314_consen    1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPAPKNGSAESIIYDFLSLL   80 (185)
T ss_pred             CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCCCCCCchHHHHHHHHHHH
Confidence            5677776    557799999999999999999999999998876554444555432 44445554552   222233333


Q ss_pred             HHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc
Q 006868           78 RFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER  130 (628)
Q Consensus        78 ~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~  130 (628)
                      ..+....  .+..+.--+-|+|.+...+      .-.+-+.|...|.+.+..+
T Consensus        81 ~al~~~~--~~~~~~~ii~ilg~~~g~~------~~~~~r~~~~~g~~v~vN~  125 (185)
T PF09314_consen   81 HALRFIK--QDKIKYDIILILGYGIGPF------FLPFLRKLRKKGGKVVVNM  125 (185)
T ss_pred             HHHHHHh--hccccCCEEEEEcCCccHH------HHHHHHhhhhcCCcEEECC
Confidence            3331111  0012233566777652221      2344456667787776553

>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]

Probab=87.78  E-value=0.26  Score=53.14  Aligned_cols=63  Identities=41%  Similarity=0.571  Sum_probs=56.8

Q ss_pred             EEecCCcChh------HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhh
Q 006868           97 VFGLGDSGYQ------KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI  159 (628)
Q Consensus        97 VfGlGds~y~------~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~  159 (628)
                      |||+||+-|-      .|++-.+.+..+|.+++|.....++.+++++++++..+...|--.||+++...
T Consensus         1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~   69 (638)
T KOG0560|consen    1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKG   69 (638)
T ss_pred             CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCC
Confidence            6899998773      48888899999999999999999999999999999999999999999999654

>KOG4530 consensus Predicted flavoprotein [General function prediction only]

Probab=84.56  E-value=6.5  Score=36.56  Aligned_cols=87  Identities=16%  Similarity=0.164  Sum_probs=56.9

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHH------hCCCCcEEeeCCCCCcc-------------------------CCCCC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESE------RRGCPVVVRPVDDYDAR-------------------------CLPEE   54 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~------~~g~~v~~~~l~~~~~~-------------------------~l~~~   54 (628)
                      .++|.++-||.-  +.+++-.|++...      ..|++.+.+|+.+....                         .+...
T Consensus        10 ~~kv~~imGSvR--~kr~cp~ia~~v~e~~ke~~~~l~ie~vDls~lPL~~~D~e~~pi~~vd~y~~~~t~aw~~ki~~a   87 (199)
T KOG4530|consen   10 LIKVAAIMGSVR--KKRFCPGIARAVIELTKESVPGLQIEYVDLSPLPLINTDLEVNPIKSVDEYYPPVTEAWRQKILEA   87 (199)
T ss_pred             hHHHHHHhhhhh--hcccCHHHHHHHHHhhhccCCCCceEEEeccCCccccCCcccCccccccccCcHHHHHHHHHHhhc
Confidence            356677777764  4455555544443      23677788887664311                         12367


Q ss_pred             CeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecC
Q 006868           55 DTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLG  101 (628)
Q Consensus        55 ~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlG  101 (628)
                      |.++|++|-| ++.-|...+.-++||...      ..|+...|+..|
T Consensus        88 D~ivFvtPqY-N~gypA~LKNAlD~lyhe------W~gKPalivSyG  127 (199)
T KOG4530|consen   88 DSIVFVTPQY-NFGYPAPLKNALDWLYHE------WAGKPALIVSYG  127 (199)
T ss_pred             ceEEEecccc-cCCCchHHHHHHHHhhhh------hcCCceEEEEec
Confidence            8999999999 888999888888888543      556666665443

>PRK02261 methylaspartate mutase subunit S; Provisional

Probab=81.04  E-value=27  Score=32.01  Aligned_cols=124  Identities=13%  Similarity=0.134  Sum_probs=74.1

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHH-HhCCCCcEEeeCC-CCCccCCC----CCCeEEEEEecCCCCCCChhHHHHHHHH
Q 006868            7 NKLLILYASQTGNALDAAERIGRES-ERRGCPVVVRPVD-DYDARCLP----EEDTVIFVVSTTGQGDTPDSMKVFWRFL   80 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l-~~~g~~v~~~~l~-~~~~~~l~----~~~~vi~~~sT~g~G~~p~~~~~F~~~L   80 (628)
                      ++-.|+-++.-|-.-.+...+...+ +..|++  ++++- +.+++++.    +.+.=+++.|+. .+..-..++.+.+.|
T Consensus         2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~e--Vi~LG~~vp~e~i~~~a~~~~~d~V~lS~~-~~~~~~~~~~~~~~L   78 (137)
T PRK02261          2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFE--VINLGVMTSQEEFIDAAIETDADAILVSSL-YGHGEIDCRGLREKC   78 (137)
T ss_pred             CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCE--EEECCCCCCHHHHHHHHHHcCCCEEEEcCc-cccCHHHHHHHHHHH
Confidence            4445788888888888887666554 577876  44443 23334442    344434444444 456667788888888


Q ss_pred             HhccCcccccCCcEEEEEec---CCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHH
Q 006868           81 LQKSLSKQWLEGVRYAVFGL---GDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW  153 (628)
Q Consensus        81 ~~~~~~~~~l~~~~~aVfGl---Gds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~  153 (628)
                      +...     +.+.++.+=|.   +++.|       ....++|+++|...+++.+.        ..+++..|+++.+
T Consensus        79 ~~~~-----~~~~~i~vGG~~~~~~~~~-------~~~~~~l~~~G~~~vf~~~~--------~~~~i~~~l~~~~  134 (137)
T PRK02261         79 IEAG-----LGDILLYVGGNLVVGKHDF-------EEVEKKFKEMGFDRVFPPGT--------DPEEAIDDLKKDL  134 (137)
T ss_pred             HhcC-----CCCCeEEEECCCCCCccCh-------HHHHHHHHHcCCCEEECcCC--------CHHHHHHHHHHHh
Confidence            6653     44555555443   22223       45667889999888887432        2345666666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	628
3qe2_A	618	Crystal Structure Of Human Nadph-Cytochrome P450 Re		3e-79
3qfc_A	618	Crystal Structure Of Human Nadph-Cytochrome P450 (V		1e-78
3qfr_A	618	Crystal Structure Of Human Nadph-Cytochrome P450 Re		2e-78
1ja1_A	622	Cypor-Triple Mutant Length = 622		5e-77
1amo_A	615	Three-Dimensional Structure Of Nadph-Cytochrome P45		5e-77
3es9_A	618	Nadph-Cytochrome P450 Reductase In An Open Conforma		3e-76
1j9z_A	622	Cypor-W677g Length = 622		8e-76
1ja0_A	620	Cypor-W677x Length = 620		2e-75
3ojx_A	622	Disulfide Crosslinked Cytochrome P450 Reductase Ina		2e-75
3fjo_A	637	Structure Of Chimeric Yh Cpr Length = 637		7e-74
3qfs_A	458	Crystal Structure Of Nadph-Cytochrome P450 Reductas		1e-57
3qft_A	458	Crystal Structure Of Nadph-Cytochrome P450 Reductas		6e-57
1tll_A	688	Crystal Structure Of Rat Neuronal Nitric-Oxide Synt		4e-49
2bf4_A	682	A Second Fmn-Binding Site In Yeast Nadph-Cytochrome		1e-45
2bpo_A	682	Crystal Structure Of The Yeast Cpr Triple Mutant: D		3e-44
1f20_A	435	Crystal Structure Of Rat Neuronal Nitric-Oxide Synt		6e-40
4dqk_A	391	Crystal Structure Of The Fad Binding Domain Of Cyto		1e-38
4dql_A	393	Crystal Structure Of The Fad Binding Domain Of Cyto		4e-38
1ddg_A	374	Crystal Structure Of Sir-Fp60 Length = 374		7e-38
2qtz_A	539	Crystal Structure Of The Nadp+-Bound Fad-Containing		2e-37
2qtl_A	539	Crystal Structure Of The Fad-Containing Fnr-Like Mo		2e-37
1b1c_A	181	Crystal Structure Of The Fmn-Binding Domain Of Huma		8e-19
3hr4_A	219	Human Inos Reductase And Calmodulin Complex Length		7e-13
3vo1_A	314	Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+		6e-12
1ykg_A	167	Solution Structure Of The Flavodoxin-Like Domain Fr		1e-11
3vo2_A	310	Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+		8e-11
3lvb_A	311	Crystal Structure Of The Ferredoxin:nadp+ Reductase		2e-10
1jb9_A	316	Crystal Structure Of The Ferredoxin:nadp+ Reductase		3e-10
1bvy_F	191	Complex Of The Heme And Fmn-Binding Domains Of The		4e-10
3lo8_A	311	Crystal Structure Of The Oxidized Form Of Ferredoxi		5e-10
1gaq_A	314	Crystal Structure Of The Complex Between Ferredoxin		7e-10
1sm4_A	296	Crystal Structure Analysis Of The Ferredoxin-Nadp+		8e-10
1w35_A	304	Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Leng		1e-09
1h85_A	295	Ferredoxin:nadp+ Reductase Mutant With Val 136 Repl		7e-09
1qga_A	308	Pea Fnr Y308w Mutant In Complex With Nadp+ Length =		8e-09
1quf_A	304	X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+		9e-09
1go2_A	304	Structure Of Ferredoxin-nadp+ Reductase With Lys 72		9e-09
1bjk_A	295	Ferredoxin:nadp+ Reductase Mutant With Arg 264 Repl		9e-09
1qh0_A	295	Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutat		9e-09
1gr1_A	303	Structure Of Ferredoxin-Nadp+ Reductase With Glu 13		9e-09
1gjr_A	304	Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By		9e-09
1que_A	303	X-Ray Structure Of The Ferredoxin:nadp+ Reductase F		1e-08
1ogj_A	303	Ferredoxin:nadp+ Reductase Mutant With Leu 263 Repl		1e-08
1qgz_A	295	Ferredoxin:nadp+ Reductase Mutant With Leu 78 Repla		1e-08
1ewy_A	303	Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reduct		1e-08
1bqe_A	295	Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl		1e-08
1w34_A	304	Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Lengt		2e-08
2x3u_A	303	Ferredoxin-Nadp Reductase Mutant With Tyr 303 Repla		2e-08
1e62_A	304	Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla		2e-08
2bsa_A	303	Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Compl		2e-08
1e64_A	304	Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla		2e-08
1qgy_A	295	Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla		3e-08
1e63_A	304	Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla		4e-08
1h42_A	304	Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl		4e-08
1ogi_A	303	Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl		4e-08
2bmw_A	304	Ferredoxin: Nadp+reductase Mutant With Thr 155 Repl		4e-08
4af6_A	308	Pea Fnr L268v Mutant Length = 308		4e-08
1b2r_A	304	Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Leng		5e-08
3mhp_A	296	Fnr-Recruitment To The Thylakoid Length = 296		5e-08
1qg0_A	308	Wild-type Pea Fnr Length = 308		6e-08
4af7_A	308	Pea Fnr C266m Mutant Length = 308		7e-08
2vyq_A	304	Ferredoxin:nadp Reductase Mutant With Thr 155 Repla		9e-08
1qfy_A	308	Pea Fnr Y308s Mutant In Complex With Nadp+ Length =		1e-07
1j9e_A	147	Low Temperature (100k) Crystal Structure Of Flavodo		1e-07
1j8q_A	147	Low Temperature (100k) Crystal Structure Of Flavodo		1e-07
1bu5_A	147	X-Ray Crystal Structure Of The Desulfovibrio Vulgar		1e-07
1fx1_A	148	A Crystallographic Structural Study Of The Oxidatio		2e-07
1c7e_A	147	D95e Hydroquinone Flavodoxin Mutant From D. Vulgari		5e-07
1akt_A	147	G61n Oxidized Flavodoxin Mutant Length = 147		5e-07
1wsb_A	148	Flavodoxin Mutant- S64c Length = 148		6e-07
1j9g_A	147	Low Temperature (100k) Crystal Structure Of Flavodo		6e-07
1f4p_A	147	Y98w Flavodoxin Mutant 1.5a (D. Vulgaris) Length =		6e-07
1i1o_A	147	Room Temperature Crystal Structure Flavodoxin D. Vu		6e-07
4heq_A	146	The Crystal Structure Of Flavodoxin From Desulfovib		6e-07
1akr_A	147	G61a Oxidized Flavodoxin Mutant Length = 147		6e-07
2xnc_A	315	Crystal Structure Of An Engineered Ferredoxin Nadp		8e-07
1fnb_A	314	Refined Crystal Structure Of Spinach Ferredoxin Red		9e-07
1akw_A	147	G61l Oxidized Flavodoxin Mutant Length = 147		1e-06
1azl_A	147	G61v Flavodoxin Mutant From Desulfovibrio Vulgaris		1e-06
1akq_A	147	D95a Oxidized Flavodoxin Mutant From D. Vulgaris Le		1e-06
1bx1_A	314	Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta		1e-06
1frn_A	314	The Involvement Of Ser96 In The Catalytic Mechanism		2e-06
1bx0_A	314	Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta		3e-06
1frq_A	314	Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta		3e-06
2rc5_A	314	Refined Structure Of Fnr From Leptospira Interrogan		2e-05
3f6r_A	148	Desulfovibrio Desulfuricans (Atcc 29577) Oxidized F		8e-04

>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase Length = 618

Iteration: 1
 Score =  292 bits (748), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 198/648 (30%), Positives = 323/648 (49%), Gaps = 63/648 (9%)
Query: 1   MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
           M++  RN +++ Y SQTG A + A R+ +++ R   RG        D  D   LPE D  
Sbjct: 14  MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNA 72
Query: 57  -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
            V+F ++T G+GD  D+ + F+ +L +  +    L GV++AVFGLG+  Y+ FN + K +
Sbjct: 73  LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYV 129
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEM 175
           D RL  LGA  + E GLGDD      E     W    W  + +        G +  I + 
Sbjct: 130 DKRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWLAVCE-HFGVEATGEESSIRQY 186
Query: 176 KLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKA------V 229
           +L+    VH                +D++  ++ +        G+L +Y N+        
Sbjct: 187 ELV----VH----------------TDIDAAKVYMG-----EMGRLKSYENQKPPFDAKN 221
Query: 230 CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNL 289
            FL  +        G+ + + H E +   + I YE GD + + P+ D A V+   +    
Sbjct: 222 PFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGA 281
Query: 290 DPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATA 349
           D D ++++ + + ++      K+    P   RT +   +D+T+  PR      ++ +A+ 
Sbjct: 282 DLDVVMSLNNLDEESN----KKHPFPCPTSYRTALTYYLDITNP-PRTNVLYELAQYASE 336
Query: 350 EHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRA 407
             E+E L+  AS   EG++    +  + RR +L +L+D PS++ PID L +L+P L+ R 
Sbjct: 337 PSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARY 396
Query: 408 FSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQK 463
           +SI+SS   HPN VH+   VV + T   R   G+ + WL   +P  + G    +P + +K
Sbjct: 397 YSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRK 456
Query: 464 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLY 520
                P   + P+I++GPGTG APF GF++ERA ++         + ++GCR  D D+LY
Sbjct: 457 SQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLY 516
Query: 521 RELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVA 580
           RE  L+    DG  ++       VAFSR+Q  KVYVQH + +  + +W L+   A IYV 
Sbjct: 517 RE-ELAQFHRDGALTQLN-----VAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVC 570
Query: 581 GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           G A  M  DV +TF +IV++ G      A +++K L   GRY ++ WS
Sbjct: 571 GDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 618

>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e Mutant) Length = 618

Iteration: 1
 Score =  291 bits (744), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 198/648 (30%), Positives = 322/648 (49%), Gaps = 63/648 (9%)
Query: 1   MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
           M++  RN +++ Y SQTG A + A R+ +++ R   RG        D  D   LPE D  
Sbjct: 14  MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNA 72
Query: 57  -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
            V+F ++T G+GD  D+ + F+ +L +  +    L GV++AVFGLG+  Y+ FN + K +
Sbjct: 73  LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYV 129
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEM 175
           D RL  LGA  + E GLGDD      E     W    W  + +        G +  I + 
Sbjct: 130 DKRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWLAVCE-HFGVEATGEESSIRQY 186
Query: 176 KLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKA------V 229
           +L+    VH                +D++  ++ +        G+L +Y N+        
Sbjct: 187 ELV----VH----------------TDIDAAKVYMG-----EMGRLKSYENQKPPFDAKN 221
Query: 230 CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNL 289
            FL  +        G+ + + H E +   + I YE GD + + P+ D A V+   +    
Sbjct: 222 PFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGA 281
Query: 290 DPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATA 349
           D D ++++ + + ++      K+    P   RT +   +D+T+  PR      ++ +A+ 
Sbjct: 282 DLDVVMSLNNLDEESN----KKHPFPCPTSYRTALTYYLDITNP-PRTNVLYELAQYASE 336
Query: 350 EHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRA 407
             E+E L+  AS   EG++    +  + RR +L +L+D PS++ PID L +L+P L+ R 
Sbjct: 337 PSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARY 396
Query: 408 FSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQK 463
           +SI+SS   HPN VH+   VV + T   R   G  + WL   +P  + G    +P + +K
Sbjct: 397 YSIASSSKVHPNSVHICAVVVEYETKAGRINKGEATNWLRAKEPVGENGGRALVPMFVRK 456
Query: 464 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLY 520
                P   + P+I++GPGTG APF GF++ERA ++         + ++GCR  D D+LY
Sbjct: 457 SQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLY 516
Query: 521 RELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVA 580
           RE  L+    DG  ++       VAFSR+Q  KVYVQH + +  + +W L+   A IYV 
Sbjct: 517 RE-ELAQFHRDGALTQLN-----VAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVC 570
Query: 581 GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           G A  M  DV +TF +IV++ G      A +++K L   GRY ++ WS
Sbjct: 571 GDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 618

>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase (R457h Mutant) Length = 618

Iteration: 1
 Score =  290 bits (741), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 198/648 (30%), Positives = 317/648 (48%), Gaps = 63/648 (9%)
Query: 1   MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
           M++  RN +++ Y SQTG A + A R+ +++ R   RG        D  D   LPE D  
Sbjct: 14  MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNA 72
Query: 57  -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
            V+F ++T G+GD  D+ + F+ +L +  +    L GV++AVFGLG+  Y+ FN + K +
Sbjct: 73  LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYV 129
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEM 175
           D RL  LGA  + E GLGDD      E     W    W       P+           E 
Sbjct: 130 DKRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFW-------PAVCEHFGVEATGEE 180
Query: 176 KLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKA------V 229
             I Q ++ + +  ID A   +                     G+L +Y N+        
Sbjct: 181 SSIRQYEL-VVHTDIDAAKVYMG------------------EMGRLKSYENQKPPFDAKN 221
Query: 230 CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNL 289
            FL  +        G+ + + H E +   + I YE GD + + P+ D A V+   +    
Sbjct: 222 PFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGA 281
Query: 290 DPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATA 349
           D D ++++ + + ++      K+    P   RT +   +D+T+  PR      ++ +A+ 
Sbjct: 282 DLDVVMSLNNLDEESN----KKHPFPCPTSYRTALTYYLDITNP-PRTNVLYELAQYASE 336
Query: 350 EHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRA 407
             E+E L+  AS   EG++    +  + RR +L +L+D PS++ PID L +L+P L+   
Sbjct: 337 PSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQAHY 396
Query: 408 FSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQK 463
           +SI+SS   HPN VH+   VV + T   R   G+ + WL   +P  + G    +P + +K
Sbjct: 397 YSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPAGENGGRALVPMFVRK 456
Query: 464 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLY 520
                P   + P+I++GPGTG APF GF++ERA ++         + ++GCR  D D+LY
Sbjct: 457 SQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLY 516
Query: 521 RELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVA 580
           RE  L+    DG  ++       VAFSR+Q  KVYVQH + +  + +W L+   A IYV 
Sbjct: 517 RE-ELAQFHRDGALTQLN-----VAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVC 570
Query: 581 GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           G A  M  DV +TF +IV++ G      A +++K L   GRY ++ WS
Sbjct: 571 GDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 618

>pdb|1JA1|A Chain A, Cypor-Triple Mutant Length = 622

Iteration: 1
 Score =  285 bits (730), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 198/652 (30%), Positives = 318/652 (48%), Gaps = 70/652 (10%)
Query: 1   MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
           M++  RN +++ Y SQTG A + A R+ +++ R   RG        D  D   LPE D  
Sbjct: 17  MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKS 75
Query: 57  -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
            V+F ++T G+GD  D+ + F+ +L +  +    L GV++AVFGLG+  Y+ FN + K +
Sbjct: 76  LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYV 132
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF---PQGPDHVI 172
           D RL  LGA  + E GLGDD      E     W    W  + +    FF     G +  I
Sbjct: 133 DQRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWPAVCE----FFGVEATGEESSI 186
Query: 173 EEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKA---- 228
            + +L+    VH                       M +    +   G+L +Y N+     
Sbjct: 187 RQYELV----VHED---------------------MDVAKVYTGEMGRLKSYENQKPPFD 221
Query: 229 --VCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQR 286
               FL  +        G+ + + H E +   + I YE GD + + P+ D A V+   + 
Sbjct: 222 AKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEI 281
Query: 287 CNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYF 346
              D D ++++ + + ++      K+    P   RT +   +D+T+  PR      ++ +
Sbjct: 282 LGADLDVIMSLNNLDEESN----KKHPFPCPTTYRTALTYYLDITN-PPRTNVLYELAQY 336
Query: 347 ATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLK 404
           A+   E+E L   AS   EG++    +  + RR +L +L+D+PS++ PID L +L+P L+
Sbjct: 337 ASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQ 396
Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP--QQG--IYIPAW 460
            R ++I+SS   HPN VH+    V +     R   G+ + WL   +P  + G    +P +
Sbjct: 397 ARYYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMF 456
Query: 461 FQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAAPIIFFFGCRNED-D 517
            +K     P   + P+I++GPGTG APF GF++ERA ++         + ++GCR  D D
Sbjct: 457 VRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDED 516
Query: 518 FLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLL-SKAS 576
           +LYRE  L+    DG  ++       VAFSR+Q  KVYVQH +    + +W L+    A 
Sbjct: 517 YLYRE-ELARFHKDGALTQLN-----VAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAH 570
Query: 577 IYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           IYVAG A  M  DV +TF +IV++ G      A +++K L   GRY +  WS
Sbjct: 571 IYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVWS 622

>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450 Reductase: Prototype For Fmn-And Fad-Containing Enzymes Length = 615

Iteration: 1
 Score =  285 bits (729), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 198/652 (30%), Positives = 318/652 (48%), Gaps = 70/652 (10%)
Query: 1   MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
           M++  RN +++ Y SQTG A + A R+ +++ R   RG        D  D   LPE D  
Sbjct: 10  MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKS 68
Query: 57  -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
            V+F ++T G+GD  D+ + F+ +L +  +    L GV++AVFGLG+  Y+ FN + K +
Sbjct: 69  LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYV 125
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF---PQGPDHVI 172
           D RL  LGA  + E GLGDD      E     W    W  + +    FF     G +  I
Sbjct: 126 DQRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWPAVCE----FFGVEATGEESSI 179
Query: 173 EEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKA---- 228
            + +L+    VH                       M +    +   G+L +Y N+     
Sbjct: 180 RQYELV----VHED---------------------MDVAKVYTGEMGRLKSYENQKPPFD 214
Query: 229 --VCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQR 286
               FL  +        G+ + + H E +   + I YE GD + + P+ D A V+   + 
Sbjct: 215 AKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEI 274
Query: 287 CNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYF 346
              D D ++++ + + ++      K+    P   RT +   +D+T+  PR      ++ +
Sbjct: 275 LGADLDVIMSLNNLDEESN----KKHPFPCPTTYRTALTYYLDITNP-PRTNVLYELAQY 329
Query: 347 ATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLK 404
           A+   E+E L   AS   EG++    +  + RR +L +L+D+PS++ PID L +L+P L+
Sbjct: 330 ASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQ 389
Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP--QQG--IYIPAW 460
            R +SI+SS   HPN VH+    V +     R   G+ + WL   +P  + G    +P +
Sbjct: 390 ARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMF 449
Query: 461 FQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAAPIIFFFGCRNED-D 517
            +K     P   + P+I++GPGTG APF GF++ERA ++         + ++GCR  D D
Sbjct: 450 VRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDED 509
Query: 518 FLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLL-SKAS 576
           +LYRE  L+    DG  ++       VAFSR+Q  KVYVQH +    + +W L+    A 
Sbjct: 510 YLYRE-ELARFHKDGALTQLN-----VAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAH 563
Query: 577 IYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           IYV G A  M  DV +TF +IV++ G      A +++K L   GRY ++ WS
Sbjct: 564 IYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS 615

>pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation Length = 618

Iteration: 1
 Score =  283 bits (723), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 198/649 (30%), Positives = 321/649 (49%), Gaps = 68/649 (10%)
Query: 1   MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
           M++  RN +++ Y SQTG A + A R+ +++ R   RG        D  D   LPE D  
Sbjct: 17  MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKS 75
Query: 57  -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
            V+F ++T G+GD  D+ + F+ +L +  +    L GV++AVFGLG+  Y+ FN + K +
Sbjct: 76  LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYV 132
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEM 175
           D RL  LGA  + E GLGDD      +G L+    + WR        F+P   +    E 
Sbjct: 133 DQRLEQLGAQRIFELGLGDD------DGNLEEDFIT-WRE------QFWPAVCEFFGVEA 179
Query: 176 KLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKA------V 229
             I Q ++ + +  +D A                     +   G+L +Y N+        
Sbjct: 180 SSIRQYEL-VVHEDMDVA------------------KVYTGEMGRLKSYENQKPPFDAKN 220
Query: 230 CFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNL 289
            FL  +        G+ + + H E +   + I YE GD + + P+ D A V+   +    
Sbjct: 221 PFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGA 280
Query: 290 DPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATA 349
           D D ++++ + + ++      K+    P   RT +   +D+T+  PR      ++ +A+ 
Sbjct: 281 DLDVIMSLNNLDEESN----KKHPFPCPTTYRTALTYYLDITNP-PRTNVLYELAQYASE 335
Query: 350 EHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRA 407
             E+E L   AS   EG++    +  + RR +L +L+D+PS++ PID L +L+P L+ R 
Sbjct: 336 PSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARY 395
Query: 408 FSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQK 463
           +SI+SS   HPN VH+    V +     R   G+ + WL   +P  + G    +P + +K
Sbjct: 396 YSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRK 455
Query: 464 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLY 520
                P   + P+I++GPGTG APF GF++ERA ++         + ++GCR  D D+LY
Sbjct: 456 SQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLY 515
Query: 521 RELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLL-SKASIYV 579
           RE  L+    DG  ++       VAFSR+Q  KVYVQH +    + +W L+    A IYV
Sbjct: 516 RE-ELARFHKDGALTQLN-----VAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYV 569
Query: 580 AGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
            G A  M  DV +TF +IV++ G      A +++K L   GRY ++ WS
Sbjct: 570 CGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS 618

>pdb|1J9Z|A Chain A, Cypor-W677g Length = 622

Iteration: 1
 Score =  281 bits (719), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 197/652 (30%), Positives = 317/652 (48%), Gaps = 70/652 (10%)
Query: 1   MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
           M++  RN +++ Y SQTG A + A R+ +++ R   RG        D  D   LPE D  
Sbjct: 17  MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKS 75
Query: 57  -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
            V+F ++T G+GD  D+ + F+ +L +  +    L GV++AVFGLG+  Y+ FN + K +
Sbjct: 76  LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYV 132
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF---PQGPDHVI 172
           D RL  LGA  + E GLGDD      E     W    W  + +    FF     G +  I
Sbjct: 133 DQRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWPAVCE----FFGVEATGEESSI 186
Query: 173 EEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKA---- 228
            + +L+    VH                       M +    +   G+L +Y N+     
Sbjct: 187 RQYELV----VHED---------------------MDVAKVYTGEMGRLKSYENQKPPFD 221
Query: 229 --VCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQR 286
               FL  +        G+ + + H E +   + I YE GD + + P+ D A V+   + 
Sbjct: 222 AKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEI 281
Query: 287 CNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYF 346
              D D ++++ + + ++      K+    P   RT +   +D+T+  PR      ++ +
Sbjct: 282 LGADLDVIMSLNNLDEESN----KKHPFPCPTTYRTALTYYLDITNP-PRTNVLYELAQY 336
Query: 347 ATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLK 404
           A+   E+E L   AS   EG++    +  + RR +L +L+D+PS++ PID L +L+P L+
Sbjct: 337 ASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQ 396
Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP--QQG--IYIPAW 460
            R +SI+SS   HPN VH+    V +     R   G+ + WL   +P  + G    +P +
Sbjct: 397 ARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMF 456
Query: 461 FQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAAPIIFFFGCRNED-D 517
            +K     P   + P+I++GPGTG APF GF++ERA ++         + ++GCR  D D
Sbjct: 457 VRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDED 516
Query: 518 FLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLL-SKAS 576
           +LYRE  L+    DG  ++       VAFSR+Q  KVYVQH +    + +W L+    A 
Sbjct: 517 YLYRE-ELARFHKDGALTQLN-----VAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAH 570
Query: 577 IYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           IYV G A  M  DV +TF +IV++ G      A +++K L   GRY ++  S
Sbjct: 571 IYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVGS 622

>pdb|1JA0|A Chain A, Cypor-W677x Length = 620

Iteration: 1
 Score =  280 bits (716), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 196/649 (30%), Positives = 316/649 (48%), Gaps = 70/649 (10%)
Query: 1   MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
           M++  RN +++ Y SQTG A + A R+ +++ R   RG        D  D   LPE D  
Sbjct: 17  MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKS 75
Query: 57  -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
            V+F ++T G+GD  D+ + F+ +L +  +    L GV++AVFGLG+  Y+ FN + K +
Sbjct: 76  LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYV 132
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF---PQGPDHVI 172
           D RL  LGA  + E GLGDD      E     W    W  + +    FF     G +  I
Sbjct: 133 DQRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWPAVCE----FFGVEATGEESSI 186
Query: 173 EEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKA---- 228
            + +L+    VH                       M +    +   G+L +Y N+     
Sbjct: 187 RQYELV----VHED---------------------MDVAKVYTGEMGRLKSYENQKPPFD 221
Query: 229 --VCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQR 286
               FL  +        G+ + + H E +   + I YE GD + + P+ D A V+   + 
Sbjct: 222 AKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEI 281
Query: 287 CNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYF 346
              D D ++++ + + ++      K+    P   RT +   +D+T+  PR      ++ +
Sbjct: 282 LGADLDVIMSLNNLDEESN----KKHPFPCPTTYRTALTYYLDITNP-PRTNVLYELAQY 336
Query: 347 ATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLK 404
           A+   E+E L   AS   EG++    +  + RR +L +L+D+PS++ PID L +L+P L+
Sbjct: 337 ASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQ 396
Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP--QQG--IYIPAW 460
            R +SI+SS   HPN VH+    V +     R   G+ + WL   +P  + G    +P +
Sbjct: 397 ARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMF 456
Query: 461 FQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAAPIIFFFGCRNED-D 517
            +K     P   + P+I++GPGTG APF GF++ERA ++         + ++GCR  D D
Sbjct: 457 VRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDED 516
Query: 518 FLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLL-SKAS 576
           +LYRE  L+    DG  ++       VAFSR+Q  KVYVQH +    + +W L+    A 
Sbjct: 517 YLYRE-ELARFHKDGALTQLN-----VAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAH 570
Query: 577 IYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVE 625
           IYV G A  M  DV +TF +IV++ G      A +++K L   GRY ++
Sbjct: 571 IYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLD 619

>pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive Length = 622

Iteration: 1
 Score =  280 bits (716), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 197/652 (30%), Positives = 317/652 (48%), Gaps = 70/652 (10%)
Query: 1   MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
           M++  RN +++ Y SQTG A + A R+ +++ R   RG        D  D   LPE D  
Sbjct: 17  MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKS 75
Query: 57  -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
            V+F ++T G+GD   + + F+ +L +  +    L GV++AVFGLG+  Y+ FN + K +
Sbjct: 76  LVVFAMATYGEGDPTCNAQDFYDWLQETDVD---LTGVKFAVFGLGNKTYEHFNAMGKYV 132
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF---PQGPDHVI 172
           D RL  LGA  + E GLGDD      E     W    W  + +    FF     G +  I
Sbjct: 133 DQRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFWPAVAE----FFGVEATGEESSI 186
Query: 173 EEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKA---- 228
            + +L+    VH                       M +    +   G+L +Y N+     
Sbjct: 187 RQYELV----VHED---------------------MDVAKVYTGEMGRLKSYENQKPPFD 221
Query: 229 --VCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQR 286
               FL  +        G+ + + H E +   + I YE GD + + P+ D A V+   + 
Sbjct: 222 AKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEI 281
Query: 287 CNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYF 346
              D D ++++ + + ++      K+    P   RT +   +D+T+  PR      ++ +
Sbjct: 282 LGADLDVIMSLNNLDEESN----KKHPFPTPTTYRTALTYYLDITN-PPRTNVLYELAQY 336
Query: 347 ATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLK 404
           A+   E+E L   AS   EG++    +  + RR +L +L+D+PS++ PID L++L+P L+
Sbjct: 337 ASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLLELLPRLQ 396
Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP--QQG--IYIPAW 460
            R +SI+SS   HPN VH+T   V +     R   G+ + WL   +P  + G    +P +
Sbjct: 397 ARYYSIASSSKVHPNSVHITAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMF 456
Query: 461 FQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAAPIIFFFGCRNED-D 517
             K     P   + P+I++GPGTG APF GF++ERA ++         + ++G R  D D
Sbjct: 457 VCKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGARRSDED 516
Query: 518 FLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLL-SKAS 576
           +LYRE  L+    DG  ++       VAFSR+Q  KVYVQH +    + +W L+    A 
Sbjct: 517 YLYRE-ELARFHKDGALTQLN-----VAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAH 570
Query: 577 IYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           IYV G A  M  DV +TF +IV++ G      A +++K L   GRY ++ WS
Sbjct: 571 IYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS 622

>pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr Length = 637

Iteration: 1
 Score =  275 bits (702), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 192/642 (29%), Positives = 313/642 (48%), Gaps = 57/642 (8%)
Query: 4   EKRNKLLILYASQTGNALDAAERIGRE-SERRGCPVVVRPVDDYDARCLPEEDTVIFV-V 61
           E     L+LYASQTG A D A++  +E   +    V+   V++YD   L +   ++ + +
Sbjct: 36  ENNKNYLVLYASQTGTAEDYAKKFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFI 95
Query: 62  STTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121
           ST G+GD PD    F  F+         L  +RY +FGLG+S Y+ FN  AKK +  L  
Sbjct: 96  STYGEGDFPDGAVNFEDFICNAEAGA--LSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSA 153
Query: 122 LGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQP 181
            GA  + + G  DD   +  E  +       W+              D ++E +K  D+ 
Sbjct: 154 AGAIRLGKLGEADDGAGTTDEDYM------AWK--------------DSILEVLK--DEL 191
Query: 182 KVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKA------VCFLKMI 235
            V  T          L   +D++  ++ +        G+L +Y N+         FL  +
Sbjct: 192 GVEATGEESSIRQYELVVHTDIDAAKVYMG-----EMGRLKSYENQKPPFDAKNPFLAAV 246
Query: 236 KNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALI 295
                   G+ + + H E +   + I YE GD + + P+ D A V+   +    D D ++
Sbjct: 247 TTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVM 306
Query: 296 TVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKER 355
           ++ + + ++      K+    P   RT +   +D+T+  PR      ++ +A+   E+E 
Sbjct: 307 SLNNLDEESN----KKHPFPCPTSYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQEL 361
Query: 356 LQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSS 413
           L+  AS   EG++    +  + RR +L +L+D PS++ PID L +L+P L+ R +SI+SS
Sbjct: 362 LRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASS 421
Query: 414 PLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP 469
              HPN VH+   VV + T   R   G+ + WL   +P  + G    +P + +K     P
Sbjct: 422 SKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPAGENGGRALVPMFVRKSQFRLP 481
Query: 470 -PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLS 526
              + P+I++GPGTG APF GF++ERA ++         + ++GCR  D D+LYRE  L+
Sbjct: 482 FKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYRE-ELA 540
Query: 527 HSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKM 586
               DG  ++       VAFSR+Q  KVYVQH + +  + +W L+   A IYV G A  M
Sbjct: 541 QFHRDGALTQ-----LNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNM 595
Query: 587 PSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
             DV +TF +IV++ G      A +++K L   GRY ++ WS
Sbjct: 596 ARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 637

>pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH Domain) Length = 458

Iteration: 1
 Score =  221 bits (562), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 135/425 (31%), Positives = 221/425 (52%), Gaps = 26/425 (6%)
Query: 219 GKLSNYNNKA------VCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEIL 272
           G+L +Y N+         FL  +        G+ + + H E +   + I YE GD + + 
Sbjct: 45  GRLKSYENQKPPFDAKNPFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVY 104
Query: 273 PSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTS 332
           P+ D A V+   +    D D ++++ + + ++      K+    P   RT +   +D+T+
Sbjct: 105 PANDSALVNQLGKILGADLDVVMSLNNLDEESN----KKHPFPCPTSYRTALTYYLDITN 160
Query: 333 ASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQ 390
             PR      ++ +A+   E+E L+  AS   EG++    +  + RR +L +L+D PS++
Sbjct: 161 -PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLR 219
Query: 391 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD 450
            PID L +L+P L+ R +SI+SS   HPN VH+   VV + T   R   G+ + WL   +
Sbjct: 220 PPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKE 279
Query: 451 P--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAA 504
           P  + G    +P + +K     P   + P+I++GPGTG APF GF++ERA ++       
Sbjct: 280 PVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVG 339
Query: 505 PIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQ 563
             + ++GCR  D D+LYRE  L+    DG  ++       VAFSR+Q  KVYVQH + + 
Sbjct: 340 ETLLYYGCRRSDEDYLYRE-ELAQFHRDGALTQ-----LNVAFSREQSHKVYVQHLLKQD 393
Query: 564 SQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            + +W L+   A IYV G A  M  DV +TF +IV++ G      A +++K L   GRY 
Sbjct: 394 REHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYS 453
Query: 624 VEAWS 628
           ++ WS
Sbjct: 454 LDVWS 458

>pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH DOMAIN And R457h Mutant) Length = 458

Iteration: 1
 Score =  218 bits (556), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 134/425 (31%), Positives = 220/425 (51%), Gaps = 26/425 (6%)
Query: 219 GKLSNYNNKA------VCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEIL 272
           G+L +Y N+         FL  +        G+ + + H E +   + I YE GD + + 
Sbjct: 45  GRLKSYENQKPPFDAKNPFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVY 104
Query: 273 PSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTS 332
           P+ D A V+   +    D D ++++ + + ++      K+    P   RT +   +D+T+
Sbjct: 105 PANDSALVNQLGKILGADLDVVMSLNNLDEESN----KKHPFPCPTSYRTALTYYLDITN 160
Query: 333 ASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQ 390
             PR      ++ +A+   E+E L+  AS   EG++    +  + RR +L +L+D PS++
Sbjct: 161 -PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLR 219
Query: 391 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD 450
            PID L +L+P L+   +SI+SS   HPN VH+   VV + T   R   G+ + WL   +
Sbjct: 220 PPIDHLCELLPRLQAHYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKE 279
Query: 451 P--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERA-IQSSSGPAA 504
           P  + G    +P + +K     P   + P+I++GPGTG APF GF++ERA ++       
Sbjct: 280 PVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVG 339
Query: 505 PIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQ 563
             + ++GCR  D D+LYRE  L+    DG  ++       VAFSR+Q  KVYVQH + + 
Sbjct: 340 ETLLYYGCRRSDEDYLYRE-ELAQFHRDGALTQ-----LNVAFSREQSHKVYVQHLLKQD 393
Query: 564 SQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            + +W L+   A IYV G A  M  DV +TF +IV++ G      A +++K L   GRY 
Sbjct: 394 REHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYS 453
Query: 624 VEAWS 628
           ++ WS
Sbjct: 454 LDVWS 458

>pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase Reductase Module At 2.3 A Resolution. Length = 688

Iteration: 1
 Score =  192 bits (489), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 196/678 (28%), Positives = 310/678 (45%), Gaps = 96/678 (14%)
Query: 5   KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTT 64
           KR K  ILYA++TG +   A+ +  E  +         +++YD   L  E  V+ V ST 
Sbjct: 10  KRVKATILYATETGKSQAYAKTLC-EIFKHAFDAKAMSMEEYDIVHLEHEALVLVVTSTF 68
Query: 65  GQGDTPDSMKVFWRFLLQ-----------KSLSKQW------------------------ 89
           G GD P++ + F   L++           KS   ++                        
Sbjct: 69  GNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFE 128
Query: 90  ----LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGAL 145
               L  VR++VFGLG   Y  F      +D  L +LG   +++   GD+    G E A 
Sbjct: 129 STGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDEL--CGQEEAF 186
Query: 146 DPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEG 205
             W + +++    +    F  G D  IE      +P   +    I N  S   N   L  
Sbjct: 187 RTWAKKVFKAACDV----FCVGDDVNIE------KPNNSL----ISNDRSWKRNKFRL-- 230
Query: 206 IRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFV-SAAIEYE 264
               +  A  ++ G LSN + K V   +++  Q L    S +           +  ++Y+
Sbjct: 231 --TYVAEAPDLTQG-LSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQ 287
Query: 265 VGDVLEILPSQDPAAVDTFIQRCNLDPDA--LITVQHKEMKNYLPDIHKNTTEV----PI 318
            GD L + P      V+  I+R    P A  ++ V+  E +N    +  N  +     P 
Sbjct: 288 PGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPC 347
Query: 319 KLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRT 378
            +    +  +D+T+  P     +  +  AT E EK+RL   +  +G  +  ++   +  T
Sbjct: 348 TIFQAFKYYLDITTP-PTPLQLQQFASLATNEKEKQRLLVLS--KGLQEYEEWKWGKNPT 404
Query: 379 VLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRK- 437
           ++EVLE+FPS+QMP   L+  +  L+ R +SISSSP  +P++VHLTV++VS+ T      
Sbjct: 405 MVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGP 464
Query: 438 -RTGLCSVWLAGLDPQQGIYIPAWFQKGS----LPRPPPSVPLILIGPGTGCAPFRGFVE 492
              G+CS WL  +  Q    +P  F +G+    LPR  P VP IL+GPGTG APFR F +
Sbjct: 465 VHHGVCSSWLNRI--QADDVVPC-FVRGAPSFHLPR-NPQVPCILVGPGTGIAPFRSFWQ 520
Query: 493 ERA--IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK 549
           +R   IQ       P++  FGCR    D +YRE  L  + N GVF E      Y A+SR+
Sbjct: 521 QRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETL-QAKNKGVFRE-----LYTAYSRE 574
Query: 550 --QPQKVYVQHKMLEQ-SQRIWNLLLSKAS-IYVAGSATKMPSDVWSTFEEIVSKEGEAS 605
             +P+K YVQ  + EQ ++ ++  L  +   IYV G  T M +DV    + I++++G+ S
Sbjct: 575 PDRPKK-YVQDVLQEQLAESVYRALKEQGGHIYVCGDVT-MAADVLKAIQRIMTQQGKLS 632
Query: 606 RDSAANWLKALQRAGRYH 623
            + A  ++  L+   RYH
Sbjct: 633 EEDAGVFISRLRDDNRYH 650

>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450 Reductase Suggests A Novel Mechanism Of Electron Transfer By Diflavin Reductases. Length = 682

Iteration: 1
 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 177/670 (26%), Positives = 292/670 (43%), Gaps = 80/670 (11%)
Query: 4   EKRNKLLILYASQTGNALDAAERIGRE-SERRGCPVVVRPVDDYDARCLPEEDTVIFV-V 61
           E     L+LYASQTG A D A++  +E   +    V+   V++YD   L +   ++ + +
Sbjct: 47  ENNKNYLVLYASQTGTAEDYAKKFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFI 106
Query: 62  STTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121
           ST G+GD PD    F  F+         L  +RY +FGLG+S Y+ FN  AKK +  L  
Sbjct: 107 STYGEGDFPDGAVNFEDFICNAEAGA--LSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSA 164
Query: 122 LGATAVVERGLGDDQHPSGYEGAL---DPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLI 178
            GA  + + G  DD   +  E  +   D  +  L   LH  +            +E K  
Sbjct: 165 AGAIRLGKLGEADDGAGTTDEDYMAWKDSILEVLKDELHLDE------------QEAKFT 212
Query: 179 DQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQ 238
            Q +  +     D+ +    +A  L   ++     R+    +L  ++        ++K++
Sbjct: 213 SQFQYTVLNEITDSMSLGEPSAHYLPSHQLN----RNADGIQLGPFDLSQPYIAPIVKSR 268
Query: 239 PLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQ 298
            L  S   ++  H EF+   + I+Y  GD L + PS     V+ F+   NLDP+ +  ++
Sbjct: 269 ELFSSND-RNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLK 327
Query: 299 HKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQY 358
             +    +P      T +   ++ ++E+T  V+     R  F  +  FA     KE+L  
Sbjct: 328 PLDPTVKVP--FPTPTTIGAAIKHYLEITGPVS-----RQLFSSLIQFAPNADVKEKLTL 380
Query: 359 FASPEGRDDLYKYNQKERRTVLEVLEDFPSV----QMPIDWLVQLVPPLKTRAFSISSSP 414
            +  + +D        +   + + L+          +P+ +LV+ VP +  R +SISSS 
Sbjct: 381 LS--KDKDQFAVEITSKYFNIADALKYLSDGAKWDTVPMQFLVESVPQMTPRYYSISSSS 438
Query: 415 LAHPNQVHLTVSVVSWTTPYKRKR---TGLCSVWLAGLDPQQ------------------ 453
           L+    VH+T  V ++  P         G+ +  L  +   Q                  
Sbjct: 439 LSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNG 498
Query: 454 ------GIYIPAWFQKGSLPRPP-PSVPLILIGPGTGCAPFRGFVEERAI----QSSSGP 502
                    +P   ++ +   P  PS P+I+IGPGTG APFRGF+ ER      Q   G 
Sbjct: 499 PRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGN 558
Query: 503 AAPI---IFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGGFYVAFSR-KQPQKVYVQ 557
              +   I F+G RN DDFLY++ W  ++   DG F         VA SR    +KVYVQ
Sbjct: 559 NVSLGKHILFYGSRNTDDFLYQDEWPEYAKKLDGSFE------MVVAHSRLPNTKKVYVQ 612
Query: 558 HKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQ 617
            K+ +   +++ ++ + A IYV G A  M   V +    I+S+    + D A   +K L+
Sbjct: 613 DKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLK 672
Query: 618 RAGRYHVEAW 627
            +GRY  + W
Sbjct: 673 TSGRYQEDVW 682

>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g, Y75f, K78a. Length = 682

Iteration: 1
 Score =  176 bits (447), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 176/670 (26%), Positives = 290/670 (43%), Gaps = 80/670 (11%)
Query: 4   EKRNKLLILYASQTGNALDAAERIGRE-SERRGCPVVVRPVDDYDARCLPEEDTVIFV-V 61
           E     L+LYASQTG A   A+   +E   +    V+   V++YD   L +   ++ + +
Sbjct: 47  ENNKNYLVLYASQTGTAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFI 106
Query: 62  STTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121
           ST G+GD PD    F  F+         L  +RY +FGLG+S Y+ FN  AKK +  L  
Sbjct: 107 STYGEGDFPDGAVNFEDFICNAEAGA--LSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSA 164
Query: 122 LGATAVVERGLGDDQHPSGYEGAL---DPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLI 178
            GA  + + G  DD   +  E  +   D  +  L   LH  +            +E K  
Sbjct: 165 AGAIRLGKLGEADDGAGTTDEDYMAWKDSILEVLKDELHLDE------------QEAKFT 212
Query: 179 DQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQ 238
            Q +  +     D+ +    +A  L   ++     R+    +L  ++        ++K++
Sbjct: 213 SQFQYTVLNEITDSMSLGEPSAHYLPSHQLN----RNADGIQLGPFDLSQPYIAPIVKSR 268
Query: 239 PLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQ 298
            L  S   ++  H EF+   + I+Y  GD L + PS     V+ F+   NLDP+ +  ++
Sbjct: 269 ELFSSND-RNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLK 327
Query: 299 HKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQY 358
             +    +P      T +   ++ ++E+T  V+     R  F  +  FA     KE+L  
Sbjct: 328 PLDPTVKVP--FPTPTTIGAAIKHYLEITGPVS-----RQLFSSLIQFAPNADVKEKLTL 380
Query: 359 FASPEGRDDLYKYNQKERRTVLEVLEDFPSV----QMPIDWLVQLVPPLKTRAFSISSSP 414
            +  + +D        +   + + L+          +P+ +LV+ VP +  R +SISSS 
Sbjct: 381 LS--KDKDQFAVEITSKYFNIADALKYLSDGAKWDTVPMQFLVESVPQMTPRYYSISSSS 438
Query: 415 LAHPNQVHLTVSVVSWTTPYKRKR---TGLCSVWLAGLDPQQ------------------ 453
           L+    VH+T  V ++  P         G+ +  L  +   Q                  
Sbjct: 439 LSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNG 498
Query: 454 ------GIYIPAWFQKGSLPRPP-PSVPLILIGPGTGCAPFRGFVEERAI----QSSSGP 502
                    +P   ++ +   P  PS P+I+IGPGTG APFRGF+ ER      Q   G 
Sbjct: 499 PRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGN 558
Query: 503 AAPI---IFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGGFYVAFSR-KQPQKVYVQ 557
              +   I F+G RN DDFLY++ W  ++   DG F         VA SR    +KVYVQ
Sbjct: 559 NVSLGKHILFYGSRNTDDFLYQDEWPEYAKKLDGSFE------MVVAHSRLPNTKKVYVQ 612
Query: 558 HKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQ 617
            K+ +   +++ ++ + A IYV G A  M   V +    I+S+    + D A   +K L+
Sbjct: 613 DKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLK 672
Query: 618 RAGRYHVEAW 627
            +GRY  + W
Sbjct: 673 TSGRYQEDVW 682

>pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase FadNADP+ Domain At 1.9a Resolution Length = 435

Iteration: 1
 Score =  162 bits (410), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 215/423 (50%), Gaps = 35/423 (8%)
Query: 221 LSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFV-SAAIEYEVGDVLEILPSQDPAA 279
           LSN + K V   +++  Q L    S +           +  ++Y+ GD L + P      
Sbjct: 22  LSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDL 81
Query: 280 VDTFIQRCNLDPDA--LITVQHKEMKNYLPDIHKNTTEV----PIKLRTFVELTMDVTSA 333
           V+  I+R    P A  ++ V+  E +N    +  N  +     P  +    +  +D+T+ 
Sbjct: 82  VNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTP 141
Query: 334 SPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPI 393
            P     +  +  AT E EK+RL   +  +G  +  ++   +  T++EVLE+FPS+QMP 
Sbjct: 142 -PTPLQLQQFASLATNEKEKQRLLVLS--KGLQEYEEWKWGKNPTMVEVLEEFPSIQMPA 198
Query: 394 DWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRK--RTGLCSVWLAGLDP 451
             L+  +  L+ R +SISSSP  +P++VHLTV++VS+ T         G+CS WL  +  
Sbjct: 199 TLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRI-- 256
Query: 452 QQGIYIPAWFQKGS----LPRPPPSVPLILIGPGTGCAPFRGFVEERA--IQSSSGPAAP 505
           Q    +P  F +G+    LPR  P VP IL+GPGTG APFR F ++R   IQ       P
Sbjct: 257 QADDVVPC-FVRGAPSFHLPR-NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCP 314
Query: 506 IIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK--QPQKVYVQHKMLE 562
           ++  FGCR    D +YRE  L  + N GVF E      Y A+SR+  +P+K YVQ  + E
Sbjct: 315 MVLVFGCRQSKIDHIYREETL-QAKNKGVFRE-----LYTAYSREPDRPKK-YVQDVLQE 367
Query: 563 Q-SQRIWNLLLSKAS-IYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAG 620
           Q ++ ++  L  +   IYV G  T M +DV    + I++++G+ S + A  ++  L+   
Sbjct: 368 QLAESVYRALKEQGGHIYVCGDVT-MAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDN 426
Query: 621 RYH 623
           RYH
Sbjct: 427 RYH 429

>pdb|4DQK|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 Length = 391

Iteration: 1
 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/408 (31%), Positives = 201/408 (49%), Gaps = 39/408 (9%)
Query: 234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDA 293
           ++ ++ L + GS +   H E E    A  Y+ GD L ++P      V+    R  LD   
Sbjct: 9   VVASKELQQPGSARSTRHLEIELPKEA-SYQEGDHLGVIPRNYEGIVNRVTARFGLDASQ 67
Query: 294 LITVQHKEMK-NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHE 352
            I ++ +E K  +LP     + E   +L  +VEL   VT     R     M+    A   
Sbjct: 68  QIRLEAEEEKLAHLPLAKTVSVE---ELLQYVELQDPVT-----RTQLRAMAAKTVAPPH 119
Query: 353 KERLQYFASPEGRDDLYKYNQKERR-TVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSIS 411
           K  L+     +     YK     +R T+LE+LE +P+ +M     + L+P ++ R +SIS
Sbjct: 120 KVELEALLEKQA----YKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSIS 175
Query: 412 SSPLAHPNQVHLTVSVVS---WTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF----QKG 464
           SSP     Q  +TVSVVS   W+   + K  G+ S +LA L  Q+G  I  +      + 
Sbjct: 176 SSPRVDEKQASITVSVVSGEAWSGYGEYK--GIASNYLAEL--QEGDTITCFISTPQSEF 231
Query: 465 SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPA-APIIFFFGCRN-EDDFLYRE 522
           +LP+ P + PLI++GPGTG APFRGFV+ R      G +      +FGCR+  +D+LY+E
Sbjct: 232 TLPKDPET-PLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQE 290
Query: 523 LWLSHSLNDGVFSEAKGGGFYVAFSR--KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVA 580
             L ++ ++G+ +       + AFSR   QP K YVQH M +  +++  LL   A  Y+ 
Sbjct: 291 -ELENAQSEGIIT------LHTAFSRMPNQP-KTYVQHVMEQDGKKLIELLDQGAHFYIC 342
Query: 581 GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           G  ++M   V +T  +  +   + S   A  WL+ L+  GRY  + W+
Sbjct: 343 GDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWA 390

>pdb|4DQL|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 In Complex With Nadp+ Length = 393

Iteration: 1
 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 127/408 (31%), Positives = 200/408 (49%), Gaps = 39/408 (9%)
Query: 234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDA 293
           ++ ++ L + GS +   H E E    A  Y+ GD L ++P      V+    R  LD   
Sbjct: 11  VVASKELQQPGSARSTRHLEIELPKEA-SYQEGDHLGVIPRNYEGIVNRVTARFGLDASQ 69
Query: 294 LITVQHKEMK-NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHE 352
            I ++ +E K  +LP     + E   +L  +VEL   VT     R     M+        
Sbjct: 70  QIRLEAEEEKLAHLPLAKTVSVE---ELLQYVELQDPVT-----RTQLRAMAAKTVCPPH 121
Query: 353 KERLQYFASPEGRDDLYKYNQKERR-TVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSIS 411
           K  L+     +     YK     +R T+LE+LE +P+ +M     + L+P ++ R +SIS
Sbjct: 122 KVELEALLEKQA----YKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSIS 177
Query: 412 SSPLAHPNQVHLTVSVVS---WTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF----QKG 464
           SSP     Q  +TVSVVS   W+   + K  G+ S +LA L  Q+G  I  +      + 
Sbjct: 178 SSPRVDEKQASITVSVVSGEAWSGYGEYK--GIASNYLAEL--QEGDTITCFISTPQSEF 233
Query: 465 SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPA-APIIFFFGCRN-EDDFLYRE 522
           +LP+ P + PLI++GPGTG APFRGFV+ R      G +      +FGCR+  +D+LY+E
Sbjct: 234 TLPKDPET-PLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQE 292
Query: 523 LWLSHSLNDGVFSEAKGGGFYVAFSR--KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVA 580
             L ++ ++G+ +       + AFSR   QP K YVQH M +  +++  LL   A  Y+ 
Sbjct: 293 -ELENAQSEGIIT------LHTAFSRMPNQP-KTYVQHVMEQDGKKLIELLDQGAHFYIC 344
Query: 581 GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           G  ++M   V +T  +  +   + S   A  WL+ L+  GRY  + W+
Sbjct: 345 GDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWA 392

>pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60 Length = 374

Iteration: 1
 Score =  155 bits (392), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 186/408 (45%), Gaps = 39/408 (9%)
Query: 222 SNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVD 281
           S Y+  A     +  NQ +T   S KDV H E +   + + Y+ GD L +    DPA V 
Sbjct: 4   SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVK 63
Query: 282 TFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFE 341
             ++   L  D  +TV+ K            T  +   L+   ELT++  +         
Sbjct: 64  ELVELLWLKGDEPVTVEGK------------TLPLNEALQWHFELTVNTANIVENYATLT 111
Query: 342 VMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVP 401
                     +K +LQ++A+     D+ +               F   Q+  + L+ L+ 
Sbjct: 112 RSETLLPLVGDKAKLQHYAATTPIVDMVR---------------FSPAQLDAEALINLLR 156
Query: 402 PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF 461
           PL  R +SI+SS     N+VH+TV VV +     R R G  S +LA    ++G  +  + 
Sbjct: 157 PLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEG-EVRVFI 214
Query: 462 QKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFL 519
           +     R P  P  P+I+IGPGTG APFR F+++RA  +   P    +FF      +DFL
Sbjct: 215 EHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRA--ADEAPGKNWLFFGNPHFTEDFL 272
Query: 520 YRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYV 579
           Y+  W  + + +GV +        +A+SR Q +KVYVQ K+ EQ   +W  +   A IYV
Sbjct: 273 YQVEWQRY-VKEGVLTRID-----LAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYV 326
Query: 580 AGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
            G A +M  DV     E++++ G    ++A  +L  L+   RY  + +
Sbjct: 327 CGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 374

>pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539

Iteration: 1
 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 205/463 (44%), Gaps = 50/463 (10%)
Query: 204 EGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEY 263
           E +++ L+ +      ++S  +   V  + + K   LT + + K     E +  +    Y
Sbjct: 89  EYLQVHLQESLGQEESQVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSY 148
Query: 264 EVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTF 323
           + GD   ++     + V + +QR  L+       +H  +     D  K    +P  +   
Sbjct: 149 QPGDAFSVICPNSDSEVQSLLQRLQLEDKR----EHXVLLKIKADTKKKGATLPQHIPAG 204
Query: 324 VELTMDVT-----SASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRT 378
             L    T      A P++ F   +  + +   EK RLQ   S +G  D  ++ +     
Sbjct: 205 CSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAXAC 264
Query: 379 VLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSW--TTPYKR 436
           +L++L  FPS Q P+  L++ +P L+ R +S +SS L HP ++H   ++V +  T   + 
Sbjct: 265 LLDLLLAFPSCQPPLSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEV 324
Query: 437 KRTGLCSVWLA--------------------GLDPQQGIYIPAWFQKGSLPRPPPSVPLI 476
            R G+C+ WLA                     L P+  I+ P       LP   PS+P+I
Sbjct: 325 LRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIF-PRTTNSFHLPD-DPSIPII 382
Query: 477 LIGPGTGCAPFRGFVEERAI---QSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDG 532
           ++GPGTG APF GF++ R     Q   G    +  FFGCR++D D+L+R+  L H L  G
Sbjct: 383 MVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRK-ELRHFLKHG 441
Query: 533 VFSEAKGGGFYVAFSRKQP------QKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATK 585
           + +  K     V+FSR  P         YVQ  +    Q++  +LL +   IYV G A  
Sbjct: 442 ILTHLK-----VSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKN 496
Query: 586 MPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           M  DV     +I+SKE    +  A   L  L+   RY  + WS
Sbjct: 497 MAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIWS 539

>pdb|2QTL|A Chain A, Crystal Structure Of The Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539

Iteration: 1
 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 205/463 (44%), Gaps = 50/463 (10%)
Query: 204 EGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEY 263
           E +++ L+ +      ++S  +   V  + + K   LT + + K     E +  +    Y
Sbjct: 89  EYLQVHLQESLGQEESQVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSY 148
Query: 264 EVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTF 323
           + GD   ++     + V + +QR  L+       +H  +     D  K    +P  +   
Sbjct: 149 QPGDAFSVICPNSDSEVQSLLQRLQLEDKR----EHXVLLKIKADTKKKGATLPQHIPAG 204
Query: 324 VELTMDVT-----SASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRT 378
             L    T      A P++ F   +  + +   EK RLQ   S +G  D  ++ +     
Sbjct: 205 XSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAXAC 264
Query: 379 VLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSW--TTPYKR 436
           +L++L  FPS Q P+  L++ +P L+ R +S +SS L HP ++H   ++V +  T   + 
Sbjct: 265 LLDLLLAFPSCQPPLSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEV 324
Query: 437 KRTGLCSVWLA--------------------GLDPQQGIYIPAWFQKGSLPRPPPSVPLI 476
            R G+C+ WLA                     L P+  I+ P       LP   PS+P+I
Sbjct: 325 LRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIF-PRTTNSFHLPD-DPSIPII 382
Query: 477 LIGPGTGCAPFRGFVEERAI---QSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDG 532
           ++GPGTG APF GF++ R     Q   G    +  FFGCR++D D+L+R+  L H L  G
Sbjct: 383 MVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRK-ELRHFLKHG 441
Query: 533 VFSEAKGGGFYVAFSRKQP------QKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATK 585
           + +  K     V+FSR  P         YVQ  +    Q++  +LL +   IYV G A  
Sbjct: 442 ILTHLK-----VSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKN 496
Query: 586 MPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           M  DV     +I+SKE    +  A   L  L+   RY  + WS
Sbjct: 497 MAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIWS 539

>pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Domain Of Human Cytochrome P450 Reductase At 1.93a Resolution Length = 181

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 11/158 (6%)
Query: 1   MREEKRNKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDYDARCLPEEDT- 56
           M++  RN +++ Y SQTG A + A R+ +++ R   RG        D  D   LPE D  
Sbjct: 13  MKKTGRN-IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNA 71
Query: 57  -VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
            V+F ++T G+GD  D+ + F+ +L +  +    L GV++AVFGLG+  Y+ FN + K +
Sbjct: 72  LVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYV 128
Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 153
           D RL  LGA  + E GLGDD      E     W    W
Sbjct: 129 DKRLEQLGAQRIFELGLGDDD--GNLEEDFITWREQFW 164

>pdb|3HR4|A Chain A, Human Inos Reductase And Calmodulin Complex Length = 219

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
Query: 6   RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTG 65
           R ++ IL+A++TG +   A  +G        P VV  +D Y   CL EE  ++ V ST G
Sbjct: 40  RVRVTILFATETGKSEALAWDLGALFSCAFNPKVV-CMDKYRLSCLEEERLLLVVTSTFG 98
Query: 66  QGDTP-DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGA 124
            GD P +  K+     + K L+ ++    RYAVFGLG S Y +F   A  +D +L  LGA
Sbjct: 99  NGDCPGNGEKLKKSLFMLKELNNKF----RYAVFGLGSSMYPRFCAFAHDIDQKLSHLGA 154
Query: 125 TAVVERGLGDDQHPSGYEGALDPW 148
           + +   G GD+   SG E A   W
Sbjct: 155 SQLTPMGEGDEL--SGQEDAFRSW 176

>pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Ii Length = 314

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 89  PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEVVKGVCSNFLCDLKPGAEVKIT 148
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++  GTG APFR F+     EE      +G A     F G  
Sbjct: 149 GPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEEHEDYKYTGLA---WLFLGVP 205
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF--SRKQP----QKVYVQHKMLEQSQRI 567
             D  LY+E             E     F + F  SR+Q     +K+Y+Q +M E  + +
Sbjct: 206 TSDTLLYKEELEK-------MKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYKEEL 258
Query: 568 WNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYH 623
           W  LL K + YV     K M   +     ++ +K+G        NWL   K L+++ +++
Sbjct: 259 WE-LLKKDNTYVYMCGLKGMEKGIDDIMLDLAAKDG-------INWLDYKKQLKKSEQWN 310
Query: 624 VEAW 627
           VE +
Sbjct: 311 VEVY 314

>pdb|1YKG|A Chain A, Solution Structure Of The Flavodoxin-Like Domain From The Escherichia Coli Sulfite Reductase Length = 167

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
Query: 9   LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGD 68
           + I+ ASQTGNA   AE +  +       V +    DY  + +  E  +I V ST G+G+
Sbjct: 12  ITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGE 71
Query: 69  TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128
            P+      +FL  K   K  LE   +AVF LGD+ Y+ F    K  D++L +LG   ++
Sbjct: 72  PPEEAVALHKFLFSKKAPK--LENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLL 129
Query: 129 ERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFP 165
           +R   D +    Y+ A   W   +   L    P   P
Sbjct: 130 DRVDADVE----YQAAASEWRARVVDALKSRAPVAAP 162

>pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Iii Length = 310

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 102/244 (41%), Gaps = 36/244 (14%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 85  PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKIT 144
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRG-----FVEERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++  GTG APFR      F+EE      SG A     F G  
Sbjct: 145 GPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLA---WLFLGVP 201
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF--SRKQP----QKVYVQHKMLEQSQRI 567
             D  LY+E             E     F + F  SR+Q     +K+Y+Q +M E  + +
Sbjct: 202 TSDSLLYKEELEK-------MKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREEL 254
Query: 568 WNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYH 623
           W  LL K + YV     K M   +      + +K+G        +W+   K L++  +++
Sbjct: 255 WE-LLKKDNTYVYMCGLKGMEKGIDDIMLNLAAKDG-------IDWMQYKKQLKKGEQWN 306
Query: 624 VEAW 627
           VE +
Sbjct: 307 VEVY 310

>pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms - Test Set Withheld Length = 311

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 17/197 (8%)
Query: 438 RTGLCSVWLAGLDPQQGIYIPAWFQKGSL-PRPPPSVPLILIGPGTGCAPFRGFVEERAI 496
           + G+CS +L    P   I +     K  L P   P+   I+I  GTG APFRG++    +
Sbjct: 125 KNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFM 184
Query: 497 QSSSGP--AAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-- 552
           +             F G  N D  LY E + S+     +        +  A SR+Q    
Sbjct: 185 EDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSY-----LKQYPDNFRYDKALSREQKNRS 239
Query: 553 --KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 610
             K+YVQ K+ E S  I+ LL   A IY  G    MP  +  T +++  + GE    S  
Sbjct: 240 GGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPG-IQDTLKKVAERRGE----SWD 294
Query: 611 NWLKALQRAGRYHVEAW 627
             L  L++  ++HVE +
Sbjct: 295 QKLAQLKKNKQWHVEVY 311

>pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms Length = 316

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 17/197 (8%)
Query: 438 RTGLCSVWLAGLDPQQGIYIPAWFQKGSL-PRPPPSVPLILIGPGTGCAPFRGFVEERAI 496
           + G+CS +L    P   I +     K  L P   P+   I+I  GTG APFRG++    +
Sbjct: 130 KNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFM 189
Query: 497 QSSSGP--AAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-- 552
           +             F G  N D  LY E + S+     +        +  A SR+Q    
Sbjct: 190 EDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSY-----LKQYPDNFRYDKALSREQKNRS 244
Query: 553 --KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 610
             K+YVQ K+ E S  I+ LL   A IY  G    MP  +  T +++  + GE    S  
Sbjct: 245 GGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPG-IQDTLKKVAERRGE----SWD 299
Query: 611 NWLKALQRAGRYHVEAW 627
             L  L++  ++HVE +
Sbjct: 300 QKLAQLKKNKQWHVEVY 316

>pdb|1BVY|F Chain F, Complex Of The Heme And Fmn-Binding Domains Of The Cytochrome P450(Bm-3) Length = 191

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Query: 9   LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGD 68
           LL+LY S  G A   A  +   +  +G    V  +D + A  LP E  V+ +V+ +  G 
Sbjct: 24  LLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSH-AGNLPREGAVL-IVTASYNGH 81
Query: 69  TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGD----SGYQKFNFVAKKLDNRLLDLGA 124
            PD+ K F  +L Q S  +  ++GVRY+VFG GD    + YQK   V   +D  L   GA
Sbjct: 82  PPDNAKQFVDWLDQASADE--VKGVRYSVFGCGDKNWATTYQK---VPAFIDETLAAKGA 136
Query: 125 TAVVERGLGDDQHPSGYEGALDPWMRSLW 153
             + +RG  D      +EG  + W   +W
Sbjct: 137 ENIADRGEAD--ASDDFEGTYEEWREHMW 163

>pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+ Reductase From Maize Root At 1.05 Angstroms Length = 311

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 17/195 (8%)
Query: 438 RTGLCSVWLAGLDPQQGIYIPAWFQKGSL-PRPPPSVPLILIGPGTGCAPFRGFVEERAI 496
           + G+CS +L    P   I +     K  L P   P+   I+I  GTG APFRG++    +
Sbjct: 125 KNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFM 184
Query: 497 QSSSGP--AAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-- 552
           +             F G  N D  LY E + S+     +        +  A SR+Q    
Sbjct: 185 EDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSY-----LKQYPDNFRYDKALSREQKNRS 239
Query: 553 --KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 610
             K+YVQ K+ E S  I+ LL   A IY  G    MP  +  T +++  + GE    S  
Sbjct: 240 GGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPG-IQDTLKKVAERRGE----SWD 294
Query: 611 NWLKALQRAGRYHVE 625
             L  L++  ++HVE
Sbjct: 295 QKLAQLKKNKQWHVE 309

>pdb|1GAQ|A Chain A, Crystal Structure Of The Complex Between Ferredoxin And Ferredoxin-Nadp+ Reductase Length = 314

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 30/241 (12%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS +        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 89  PHKVRLYSIASSAIGDFGDSKTVSLCVKRLIYTNDAGEIVKGVCSNFLCDLQPGDNVQIT 148
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPII--FFFGCRNED 516
               K  L    P+  +I++  GTG APFR F+ +   +         +   F G     
Sbjct: 149 GPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLGWLFLGVPTSS 208
Query: 517 DFLYRELWLSHSLNDGVFSEAKGGGFYV--AFSRKQP----QKVYVQHKMLEQSQRIWNL 570
             LY+E +       G   E     F V  A SR+Q     +++Y+Q +M E  + +W  
Sbjct: 209 SLLYKEEF-------GKMKERAPENFRVDYAVSREQTNAAGERMYIQTRMAEYKEELWE- 260
Query: 571 LLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 626
           LL K + YV     K M   +      +  K+G        +W    K L+R  +++VE 
Sbjct: 261 LLKKDNTYVYMCGLKGMEKGIDDIMVSLAEKDG-------IDWFDYKKQLKRGDQWNVEV 313
Query: 627 W 627
           +
Sbjct: 314 Y 314

>pdb|1SM4|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+ Reductase From Paprika Length = 296

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 100/238 (42%), Gaps = 24/238 (10%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS L        V L V  + +T     +  G+CS +L  L P   + I 
Sbjct: 71  PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDKGEEVKGVCSNFLCDLKPGADVKIT 130
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 131 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLA---WLFLGVP 187
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWN 569
                LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 188 TSSSLLYKEEFEKMKE-----KAPENFRLDFAVSREQTNEKGEKMYIQTRMAQYAEELWT 242
Query: 570 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
           LL    +         M   +      + +KEG       A++ K L++A +++VE +
Sbjct: 243 LLKKDNTFVYMCGLKGMEQGIDDIMSSLAAKEG----IDWADYKKQLKKAEQWNVEVY 296

>pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Length = 304

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 245
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 624 VEAW 627
           VE W
Sbjct: 301 VETW 304

>pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By Leu (V136l) Length = 295

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 65  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 122
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 123 KITGPLGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 181
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 182 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 236
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 237 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 291
Query: 624 VEAW 627
           VE +
Sbjct: 292 VETY 295

>pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+ Length = 308

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 30/241 (12%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS +        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 83  PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLAW---LFLGVP 199
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWN 569
                LY                 +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 200 TSSSLLY-----KEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWE 254
Query: 570 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 626
           LL    +         M   +      + +K+G        +W+   + L++A +++VE 
Sbjct: 255 LLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEV 307
Query: 627 W 627
           W
Sbjct: 308 W 308

>pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 2.25 Angstroms Length = 304

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 245
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNEKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 624 VEAW 627
           VE +
Sbjct: 301 VETY 304

>pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72 Replaced By Glu (k72e) Length = 304

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 245
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 624 VEAW 627
           VE +
Sbjct: 301 VETY 304

>pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By Glu (r264e) Length = 295

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 65  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 122
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 123 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 181
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 182 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 236
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 237 DQLWQLIKNQKTHTYICG-LEGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 291
Query: 624 VEAW 627
           VE +
Sbjct: 292 VETY 295

>pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By Asp And Leu 78 Mutated By Asp Length = 295

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 65  PEKDRDYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 122
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 123 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 181
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 182 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 236
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 237 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 291
Query: 624 VEAW 627
           VE +
Sbjct: 292 VETY 295

>pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139 Replaced By Lys (E139k) Length = 303

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 130
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKKMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 244
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 624 VEAW 627
           VE +
Sbjct: 300 VETY 303

>pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By Cocrystallization Length = 304

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 245
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 624 VEAW 627
           VE +
Sbjct: 301 VETY 304

>pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms Length = 303

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 130
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 244
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 624 VEAW 627
           VE +
Sbjct: 300 VETY 303

>pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By Pro (L263p) Length = 303

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 130
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 244
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DQLWQLIKNQKTHTYICGPRG-MEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 624 VEAW 627
           VE +
Sbjct: 300 VETY 303

>pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By Asp (L78d) Length = 295

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 65  PEKLRDYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 122
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 123 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 181
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 182 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 236
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 237 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 291
Query: 624 VEAW 627
           VE +
Sbjct: 292 VETY 295

>pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase Complex Length = 303

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 130
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 244
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
             +W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DELWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 624 VEAW 627
           VE +
Sbjct: 300 VETY 303

>pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly (T155g) Length = 295

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 65  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 122
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 123 KITGPVGKEMLLPDDPEANVIMLAGGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 181
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 182 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 236
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 237 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 291
Query: 624 VEAW 627
           VE +
Sbjct: 292 VETY 295

>pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Length = 304

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 31/243 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 245
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 624 VEA 626
           VE 
Sbjct: 301 VET 303

>pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By Phe (Y303f) Length = 303

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 130
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 244
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
             +W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DELWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 624 VEAW 627
           VE +
Sbjct: 300 VETF 303

>pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Arg (K75r) Length = 304

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P + R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PERLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 245
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 624 VEAW 627
           VE +
Sbjct: 301 VETY 304

>pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed With Nadp Length = 303

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 31/243 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGATVYGVCSTYLTHIEPGSEV 130
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 244
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 624 VEA 626
           VE 
Sbjct: 300 VET 302

>pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Gln (K75q) Length = 304

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P + R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEQLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 245
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 624 VEAW 627
           VE +
Sbjct: 301 VETY 304

>pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Glu (K75e) Length = 295

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P + R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 65  PEELRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 122
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 123 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 181
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 182 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 236
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 237 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 291
Query: 624 VEAW 627
           VE +
Sbjct: 292 VETY 295

>pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Ser (K75s) Length = 304

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P   R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PESLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 245
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 624 VEAW 627
           VE +
Sbjct: 301 VETY 304

>pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro (T155g-A160t-L263p) Length = 304

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG  P R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 245
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICGPRG-MEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 624 VEAW 627
           VE +
Sbjct: 301 VETY 304

>pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly And Ala 160 Replaced By Thr (T155g-A160t) Length = 303

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 130
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG  P R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 244
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 624 VEAW 627
           VE +
Sbjct: 300 VETY 303

>pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro, Arg 264 Replaced By Pro And Gly 265 Replaced By Pro (T155g- A160t-L263p-R264p-G265p) Length = 304

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG  P R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 245
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICGPPP-MEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 624 VEAW 627
           VE +
Sbjct: 301 VETY 304

>pdb|4AF6|A Chain A, Pea Fnr L268v Mutant Length = 308

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 30/241 (12%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS +        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 83  PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLAW---LFLGVP 199
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWN 569
                LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 200 TSSSLLYKEEFEKMKE-----KAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWE 254
Query: 570 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 626
           LL    +         M   +      + +K+G        +W+   + L++A +++VE 
Sbjct: 255 LLKKDNTFVYMCGVKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEV 307
Query: 627 W 627
           +
Sbjct: 308 Y 308

>pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Length = 304

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 245
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 624 VEAW 627
           V  +
Sbjct: 301 VATY 304

>pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid Length = 296

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 30/241 (12%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS +        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 70  PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 129
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 130 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLAW---LFLGVP 186
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWN 569
                LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 187 TSSSLLYKEEFEKMKE-----KAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWE 241
Query: 570 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 626
           LL    +         M   +      + +K+G        +W+   + L++A +++VE 
Sbjct: 242 LLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEV 294
Query: 627 W 627
           +
Sbjct: 295 Y 295

>pdb|1QG0|A Chain A, Wild-type Pea Fnr Length = 308

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 30/241 (12%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS +        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 83  PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLAW---LFLGVP 199
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWN 569
                LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 200 TSSSLLYKEEFEKMKE-----KAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWE 254
Query: 570 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 626
           LL    +         M   +      + +K+G        +W+   + L++A +++VE 
Sbjct: 255 LLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEV 307
Query: 627 W 627
           +
Sbjct: 308 Y 308

>pdb|4AF7|A Chain A, Pea Fnr C266m Mutant Length = 308

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 30/241 (12%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS +        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 83  PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLAW---LFLGVP 199
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWN 569
                LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 200 TSSSLLYKEEFEKMKE-----KAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWE 254
Query: 570 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 626
           LL    +         M   +      + +K+G        +W+   + L++A +++VE 
Sbjct: 255 LLKKDNTFVYMMGLKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEV 307
Query: 627 W 627
           +
Sbjct: 308 Y 308

>pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s) Length = 304

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 31/243 (12%)
Query: 402 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 455
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 456 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 509
            I     K  L    P   +I++  GTG  P R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 510 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 564
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 245
Query: 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 623
             +W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DELWQLIKNQKTHTYICGPRG-MEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 624 VEA 626
           VE 
Sbjct: 301 VET 303

>pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+ Length = 308

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 98/240 (40%), Gaps = 30/240 (12%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS +        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 83  PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLAW---LFLGVP 199
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWN 569
                LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 200 TSSSLLYKEEFEKMKE-----KAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWE 254
Query: 570 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 626
           LL    +         M   +      + +K+G        +W+   + L++A +++VE 
Sbjct: 255 LLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEV 307

>pdb|1J9E|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin D. Vulgaris S35c Mutant At 1.44 Angstrom Resolution Length = 147

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E  D V+   ST G 
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDCRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67  GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
               DS+++   F+ L  SL +   +G + A FG GDS Y+ F      ++ +L +LGA 
Sbjct: 62  ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGA- 116
Query: 126 AVVERGLGDDQHPSGYEGALDPW 148
            +V+ GL  D  P      +  W
Sbjct: 117 EIVQDGLRIDGDPRAARDDIVGW 139

>pdb|1J8Q|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin D. Vulgaris Wild-Type At 1.35 Angstrom Resolution Length = 147

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E  D V+   ST G 
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67  GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
               DS+++   F+ L  SL +   +G + A FG GDS Y+ F      ++ +L +LGA 
Sbjct: 62  ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGA- 116
Query: 126 AVVERGLGDDQHPSGYEGALDPW 148
            +V+ GL  D  P      +  W
Sbjct: 117 EIVQDGLRIDGDPRAARDDIVGW 139

>pdb|1BU5|A Chain A, X-Ray Crystal Structure Of The Desulfovibrio Vulgaris (Hildenborough) Apoflavodoxin-Riboflavin Complex Length = 147

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E  D V+   ST G 
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67  GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
               DS+++   F+ L  SL +   +G + A FG GDS Y+ F      ++ +L +LGA 
Sbjct: 62  ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGA- 116
Query: 126 AVVERGLGDDQHPSGYEGALDPW 148
            +V+ GL  D  P      +  W
Sbjct: 117 EIVQDGLRIDGDPRAARDDIVGW 139

>pdb|1FX1|A Chain A, A Crystallographic Structural Study Of The Oxidation States Of Desulfovibrio Vulgaris Flavodoxin Length = 148

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
           K LI+Y S TGN    AE I R+    G  V  R     +A  L E  D V+   ST G 
Sbjct: 3   KALIVYGSTTGNTEYTAETIARQLANAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 62
Query: 67  GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
               DS+++   F+ L  SL +   +G + A FG GDS Y+ F      ++ +L +LGA 
Sbjct: 63  ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGA- 117
Query: 126 AVVERGLGDDQHPSGYEGALDPW 148
            +V+ GL  D  P      +  W
Sbjct: 118 EIVQDGLRIDGDPRAARDDIVGW 140

>pdb|1C7E|A Chain A, D95e Hydroquinone Flavodoxin Mutant From D. Vulgaris Length = 147

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E  D V+   ST G 
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67  GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
               DS+++   F+ L  SL +   +G + A FG G+S Y+ F      ++ +L +LGA 
Sbjct: 62  ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGESSYEYFCGAVDAIEEKLKNLGA- 116
Query: 126 AVVERGLGDDQHPSGYEGALDPW 148
            +V+ GL  D  P      +  W
Sbjct: 117 EIVQDGLRIDGDPRAARDDIVGW 139

>pdb|1AKT|A Chain A, G61n Oxidized Flavodoxin Mutant Length = 147

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E   ++ +  +T   
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWND 61
Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           D+ +    F    L  SL +   +G + A FG GDS Y+ F      ++ +L +LGA  +
Sbjct: 62  DSIELQDDF--IPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGA-EI 118
Query: 128 VERGLGDDQHPSGYEGALDPW 148
           V+ GL  D  P      +  W
Sbjct: 119 VQDGLRIDGDPRAARDDIVGW 139

>pdb|1WSB|A Chain A, Flavodoxin Mutant- S64c Length = 148

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E  D V+   ST G 
Sbjct: 3   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 62
Query: 67  GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
               D +++   F+ L  SL +   +G + A FG GDS Y+ F      ++ +L +LGA 
Sbjct: 63  ----DCIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGA- 117
Query: 126 AVVERGLGDDQHPSGYEGALDPW 148
            +V+ GL  D  P      +  W
Sbjct: 118 EIVQDGLRIDGDPRAARDDIVGW 140

>pdb|1J9G|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin D. Vulgaris S64c Mutant, Monomer Oxidised, At 2.4 Angstrom Resolution Length = 147

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E  D V+   ST G 
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67  GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
               D +++   F+ L  SL +   +G + A FG GDS Y+ F      ++ +L +LGA 
Sbjct: 62  ----DCIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGA- 116
Query: 126 AVVERGLGDDQHPSGYEGALDPW 148
            +V+ GL  D  P      +  W
Sbjct: 117 EIVQDGLRIDGDPRAARDDIVGW 139

>pdb|1F4P|A Chain A, Y98w Flavodoxin Mutant 1.5a (D. Vulgaris) Length = 147

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E  D V+   ST G 
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67  GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
               DS+++   F+ L  SL +   +G + A FG GDS ++ F      ++ +L +LGA 
Sbjct: 62  ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGA- 116
Query: 126 AVVERGLGDDQHPSGYEGALDPW 148
            +V+ GL  D  P      +  W
Sbjct: 117 EIVQDGLRIDGDPRAARDDIVGW 139

>pdb|1I1O|A Chain A, Room Temperature Crystal Structure Flavodoxin D. Vulgaris Mutant Y98h At 2.0 Ang. Resolution Length = 147

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E  D V+   ST G 
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67  GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
               DS+++   F+ L  SL +   +G + A FG GDS ++ F      ++ +L +LGA 
Sbjct: 62  ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSHEYFCGAVDAIEEKLKNLGA- 116
Query: 126 AVVERGLGDDQHPSGYEGALDPW 148
            +V+ GL  D  P      +  W
Sbjct: 117 EIVQDGLRIDGDPRAARDDIVGW 139

>pdb|4HEQ|A Chain A, The Crystal Structure Of Flavodoxin From Desulfovibrio Gigas Length = 146

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPE-EDTVIFVVSTTGQ 66
           K LI+Y S TGN    AE I +     G    V  V D  A  L E  D V+   ST G 
Sbjct: 3   KALIVYGSTTGNTEGVAEAIAKTLNSEGMETTVVNVADVTAPGLAEGYDVVLLGCSTWGD 62
Query: 67  GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
               D +++   F+ L + L +  L+  +  VFG GDS Y  F      ++ +  +LGAT
Sbjct: 63  ----DEIELQEDFVPLYEDLDRAGLKDKKVGVFGCGDSSYTYFCGAVDVIEKKAEELGAT 118
Query: 126 AVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156
            +V   L  D  P   E  LD W R +  R+
Sbjct: 119 -LVASSLKIDGEPDSAE-VLD-WAREVLARV 146

>pdb|1AKR|A Chain A, G61a Oxidized Flavodoxin Mutant Length = 147

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E   ++ +  +T   
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWAD 61
Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           D+ +    F    L  SL +   +G + A FG GDS Y+ F      ++ +L +LGA  +
Sbjct: 62  DSIELQDDF--IPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGA-EI 118
Query: 128 VERGLGDDQHPSGYEGALDPW 148
           V+ GL  D  P      +  W
Sbjct: 119 VQDGLRIDGDPRAARDDIVGW 139

>pdb|2XNC|A Chain A, Crystal Structure Of An Engineered Ferredoxin Nadp Reductase (Fnr) From Pisum Sativum Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 96/238 (40%), Gaps = 33/238 (13%)
Query: 402 PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF 461
           P K R +SI+SS +        TVS+       KR   G+CS +L  L P   + I    
Sbjct: 98  PHKLRLYSIASSAIGDFGDSK-TVSLC-----VKRVPDGVCSNFLCDLKPGSEVKITGPV 151
Query: 462 QKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCRNED 516
            K  L    P+  +I++G GTG APFR F+     E+      +G A     F G     
Sbjct: 152 GKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLA---WLFLGVPTSS 208
Query: 517 DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWNLLL 572
             LY                 +      A SR+Q     +K+Y+Q +M + ++ +W LL 
Sbjct: 209 SLLY-----KEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWELLK 263
Query: 573 SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEAW 627
              +         M   +      + +K+G        +W+   + L++A +++VE +
Sbjct: 264 KDNTFVYMCGLKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEVY 314

>pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'- Phospho-5'-Amp Bound States Length = 314

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 32/242 (13%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + + 
Sbjct: 89  PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLA---WLFLGVP 205
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWN 569
                LY+E +                    A SR+Q     +K+Y+Q +M + +  +W 
Sbjct: 206 TSSSLLYKEEFEKMKE-----KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWE 260
Query: 570 LLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVE 625
            +L K + YV     K M   +      + + EG        +W+   + L++A +++VE
Sbjct: 261 -MLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEG-------IDWIEYKRQLKKAEQWNVE 312
Query: 626 AW 627
            +
Sbjct: 313 VY 314

>pdb|1AKW|A Chain A, G61l Oxidized Flavodoxin Mutant Length = 147

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E   ++ +  +T   
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWLD 61
Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           D+ +    F    L  SL +   +G + A FG GDS Y+ F      ++ +L +LGA  +
Sbjct: 62  DSIELQDDF--IPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGA-EI 118
Query: 128 VERGLGDDQHPSGYEGALDPW 148
           V+ GL  D  P      +  W
Sbjct: 119 VQDGLRIDGDPRAARDDIVGW 139

>pdb|1AZL|A Chain A, G61v Flavodoxin Mutant From Desulfovibrio Vulgaris Length = 147

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E   ++ +  +T   
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWVD 61
Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           D+ +    F    L  SL +   +G + A FG GDS Y+ F      ++ +L +LGA  +
Sbjct: 62  DSIELQDDF--IPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGA-EI 118
Query: 128 VERGLGDDQHPSGYEGALDPW 148
           V+ GL  D  P      +  W
Sbjct: 119 VQDGLRIDGDPRAARDDIVGW 139

>pdb|1AKQ|A Chain A, D95a Oxidized Flavodoxin Mutant From D. Vulgaris Length = 147

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E  D V+   ST G 
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61
Query: 67  GDTPDSMKVFWRFL-LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
               DS+++   F+ L  SL +   +G + A FG G S Y+ F      ++ +L +LGA 
Sbjct: 62  ----DSIELQDDFIPLFDSLEETGAQGRKVACFGCGASSYEYFCGAVDAIEEKLKNLGA- 116
Query: 126 AVVERGLGDDQHPSGYEGALDPW 148
            +V+ GL  D  P      +  W
Sbjct: 117 EIVQDGLRIDGDPRAARDDIVGW 139

>pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312q Length = 314

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 30/241 (12%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + + 
Sbjct: 89  PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLA---WLFLGVP 205
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWN 569
                LY+E +                    A SR+Q     +K+Y+Q +M + +  +W 
Sbjct: 206 TSSSLLYKEEFEKMKE-----KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWE 260
Query: 570 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 626
           +L    + +       M   +      + + EG        +W+   + L++A +++V+ 
Sbjct: 261 MLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEG-------IDWIEYKRQLKKAEQWNVQV 313
Query: 627 W 627
           +
Sbjct: 314 Y 314

>pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of Ferredoxin-Nadp+ Reductase: Structure-Function Relationship As Studied By Site-Directed Mutagenesis And X- Ray Crystallography Length = 314

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 96/241 (39%), Gaps = 30/241 (12%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R + I+SS L        V L V  + +T        G+CS +L  L P   + + 
Sbjct: 89  PHKLRLYVIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLA---WLFLGVP 205
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWN 569
                LY+E +                    A SR+Q     +K+Y+Q +M + +  +W 
Sbjct: 206 TSSSLLYKEEFEKMKE-----KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWE 260
Query: 570 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 626
           +L    + +       M   +      + + EG        +W+   + L++A +++VE 
Sbjct: 261 MLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEG-------IDWIEYKRQLKKAEQWNVEV 313
Query: 627 W 627
           +
Sbjct: 314 Y 314

>pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312l Length = 314

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 83/213 (38%), Gaps = 20/213 (9%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + + 
Sbjct: 89  PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLA---WLFLGVP 205
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWN 569
                LY+E +                    A SR+Q     +K+Y+Q +M + +  +W 
Sbjct: 206 TSSSLLYKEEFEKMKE-----KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWE 260
Query: 570 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG 602
           +L    + +       M   +      + + EG
Sbjct: 261 MLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEG 293

>pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312a Length = 314

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 96/241 (39%), Gaps = 30/241 (12%)
Query: 402 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 458
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + + 
Sbjct: 89  PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 459 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 513
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLA---WLFLGVP 205
Query: 514 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWN 569
                LY+E +                    A SR+Q     +K+Y+Q +M + +  +W 
Sbjct: 206 TSSSLLYKEEFEKMKE-----KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWE 260
Query: 570 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 626
           +L    + +       M   +      + + EG        +W+   + L++A +++V  
Sbjct: 261 MLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEG-------IDWIEYKRQLKKAEQWNVAV 313
Query: 627 W 627
           +
Sbjct: 314 Y 314

>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Length = 314

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 440 GLCSVWLAGLDPQQGIYIPA-WFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQS 498
           G+CS ++  L P   + +     +K  LP    S  ++ +  GTG APF G  EE     
Sbjct: 132 GVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHK 191
Query: 499 SSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-----K 553
                  I   +G    D+ +  +         G+ S+ K      A SR++       +
Sbjct: 192 LIKFTGNITLVYGAPYSDELVMMDYL------KGLESKHKNFKLITAISREEKNSFDGGR 245
Query: 554 VYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG 602
           +Y+ H++ EQ++ +  +L      Y+ G    M   V    ++I    G
Sbjct: 246 MYISHRVREQAEAVKKILNGGGRFYICGGPKGMEKGVIEEIQKISGNTG 294

>pdb|3F6R|A Chain A, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized Flavodoxin Length = 148

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 7   NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPE-EDTVIFVVSTTG 65
           +K+LI++ S TGN    A+++       G  V +    D  A  L +  D V+F  S  G
Sbjct: 2   SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWG 61
Query: 66  QGD---TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122
             D     D + +F  F       +  L G + A F  GD  Y+ F      ++ R  +L
Sbjct: 62  MEDLEMQDDFLSLFEEF------DRIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKEL 115
Query: 123 GATAVVE 129
           GAT + E
Sbjct: 116 GATIIAE 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	628
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	0.0
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	0.0
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	0.0
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	1e-156
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	1e-156
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	1e-146
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	1e-143
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	1e-138
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	4e-79
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	4e-76
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	4e-75
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	9e-75
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	4e-67
1ykg_A	167	SIR-FP, sulfite reductase [NADPH] flavoprotein alp	6e-66
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	1e-65
2hna_A	147	Protein MIOC, flavodoxin; alpha-beta sandwich, fla	1e-59
3hr4_A	219	Nitric oxide synthase, inducible; inducible nitric	8e-59
1bvy_F	191	Protein (cytochrome P450 BM-3); fatty acid monooxy	6e-57
1f4p_A	147	Flavodoxin; electron transport, flavoprotein, FMN,	1e-47
3f6r_A	148	Flavodoxin; FMN binding, oxidized, electron transp	2e-34
2fcr_A	173	Flavodoxin; electron transport; HET: FMN; 1.80A {C	1e-31
1yob_A	179	Flavodoxin 2, flavodoxin II; alpha-beta fold, non-	1e-22
2wc1_A	182	Flavodoxin; electron transport, flavoprotein; HET:	2e-22
1czn_A	169	Flavodoxin; FMN binding, redox potential, electron	5e-22
1ag9_A	175	Flavodoxin; electron transport, reductive activati	1e-20
2bmv_A	164	Flavodoxin; electron transport, flavoprotein, FMN,	7e-20
1obo_A	169	Flavodoxin; electron transfer, flavoprotein, elect	1e-19
2fz5_A	137	Flavodoxin; alpha/beta doubly-wound topology, non-	1e-13
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	2e-10
5nul_A	138	Flavodoxin; electron transport, flavoprotein, FMN;	2e-10
1tvc_A	250	Methane monooxygenase component C, methane monooxy	7e-10
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	8e-10
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	6e-08
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	7e-08
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	3e-07
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	1e-06
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	5e-06
3hly_A	161	Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein	1e-05
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	1e-05
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	2e-05
1rlj_A	139	NRDI protein; flavoprotein, FMN, thioredoxin, alph	3e-05
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	1e-04
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	3e-04
2ark_A	188	Flavodoxin; FMN, structural genomics, PSI, structu	5e-04
2xod_A	119	NRDI protein, NRDI; flavoprotein, redox protein, r	6e-04

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* Length = 618

 Score =  646 bits (1669), Expect = 0.0
 Identities = 181/641 (28%), Positives = 301/641 (46%), Gaps = 52/641 (8%)

Query: 3   EEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-----PEEDTV 57
           ++    +++ Y SQTG A + A R+ +++ R G   +    ++YD   L      +   V
Sbjct: 15  KKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALV 74

Query: 58  IFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDN 117
           +F ++T G+GD  D+ + F+ +L +  +    L GV++AVFGLG+  Y+ FN + K +D 
Sbjct: 75  VFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYVDK 131

Query: 118 RLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKL 177
           RL  LGA  + E GLGDD      E     W    W  + +            + +    
Sbjct: 132 RLEQLGAQRIFELGLGDDDG--NLEEDFITWREQFWLAVCEHFGVEATGEESSIRQ---- 185

Query: 178 IDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKN 237
                              +    D   + M           +   ++ K      +  N
Sbjct: 186 ---------------YELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTN 230

Query: 238 QPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITV 297
           + L + G+ + + H E +   + I YE GD + + P+ D A V+   +    D D ++++
Sbjct: 231 RKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSL 289

Query: 298 QHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQ 357
            + + ++         T     L  ++++T       PR      ++ +A+   E+E L+
Sbjct: 290 NNLDEESNKKHPFPCPTSYRTALTYYLDIT-----NPPRTNVLYELAQYASEPSEQELLR 344

Query: 358 YFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPL 415
             AS   EG++    +  + RR +L +L+D PS++ PID L +L+P L+ R +SI+SS  
Sbjct: 345 KMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSK 404

Query: 416 AHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP----QQGIYIPAWFQKGSLPRPP- 470
            HPN VH+   VV + T   R   G+ + WL   +P         +P + +K    R P 
Sbjct: 405 VHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQF-RLPF 463

Query: 471 -PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPA-APIIFFFGCRNED-DFLYRELWLSH 527
             + P+I++GPGTG APF GF++ERA     G      + ++GCR  D D+LYRE     
Sbjct: 464 KATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQF 523

Query: 528 SLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMP 587
              DG  ++       VAFSR+Q  KVYVQH + +  + +W L+   A IYV G A  M 
Sbjct: 524 -HRDGALTQ-----LNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMA 577

Query: 588 SDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
            DV +TF +IV++ G      A +++K L   GRY ++ WS
Sbjct: 578 RDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 618

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* Length = 682

 Score =  599 bits (1547), Expect = 0.0
 Identities = 168/668 (25%), Positives = 278/668 (41%), Gaps = 74/668 (11%)

Query: 3   EEKRNKLLILYASQTGNALDAAERIGRE-SERRGCPVVVRPVDDYDARCLPEEDTVI-FV 60
            E     L+LYASQTG A   A+   +E   +    V+   V++YD   L +   ++   
Sbjct: 46  TENNKNYLVLYASQTGTAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIF 105

Query: 61  VSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLL 120
           +ST G+GD PD    F  F+         L  +RY +FGLG+S Y+ FN  AKK +  L 
Sbjct: 106 ISTYGEGDFPDGAVNFEDFICNAE--AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLS 163

Query: 121 DLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQ 180
             GA  + + G  DD   +  +     W  S+   L               ++E +    
Sbjct: 164 AAGAIRLGKLGEADDGAGT-TDEDYMAWKDSILEVLKDELH----------LDEQEAKFT 212

Query: 181 PKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPL 240
            +   T   ++     +S            +  R+    +L  ++        ++K++ L
Sbjct: 213 SQFQYTV--LNEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVKSREL 270

Query: 241 TKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHK 300
             S + ++  H EF+   + I+Y  GD L + PS     V+ F+   NLDP+ +  ++  
Sbjct: 271 F-SSNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPL 329

Query: 301 EMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFA 360
           +    +P     T  +   ++ ++E+T         R  F  +  FA     KE+L   +
Sbjct: 330 DPTVKVPFPTPTT--IGAAIKHYLEIT-----GPVSRQLFSSLIQFAPNADVKEKLTLLS 382

Query: 361 SPEGRDDLYKYNQKERRTVLEVLEDF----PSVQMPIDWLVQLVPPLKTRAFSISSSPLA 416
               +D        +   + + L+          +P+ +LV+ VP +  R +SISSS L+
Sbjct: 383 K--DKDQFAVEITSKYFNIADALKYLSDGAKWDTVPMQFLVESVPQMTPRYYSISSSSLS 440

Query: 417 HPNQVHLTVSVVSWTTP---YKRKRTGLCSVWLAGLDPQQ-------------------- 453
               VH+T  V ++  P         G+ +  L  +   Q                    
Sbjct: 441 EKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPR 500

Query: 454 ----GIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSG------ 501
                  +P   ++ +  R P  PS P+I+IGPGTG APFRGF+ ER     S       
Sbjct: 501 KLFANYKLPVHVRRSNF-RLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNN 559

Query: 502 -PAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK-QPQKVYVQHK 559
                 I F+G RN DDFLY++ W  ++       E       VA SR    +KVYVQ K
Sbjct: 560 VSLGKHILFYGSRNTDDFLYQDEWPEYAKKLDGSFE-----MVVAHSRLPNTKKVYVQDK 614

Query: 560 MLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRA 619
           + +   +++ ++ + A IYV G A  M   V +    I+S+    + D A   +K L+ +
Sbjct: 615 LKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTS 674

Query: 620 GRYHVEAW 627
           GRY  + W
Sbjct: 675 GRYQEDVW 682

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 Length = 688

 Score =  591 bits (1524), Expect = 0.0
 Identities = 175/680 (25%), Positives = 286/680 (42%), Gaps = 90/680 (13%)

Query: 5   KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTT 64
           KR K  ILYA++TG +   A+ +     +         +++YD   L  E  V+ V ST 
Sbjct: 10  KRVKATILYATETGKSQAYAKTLCEI-FKHAFDAKAMSMEEYDIVHLEHEALVLVVTSTF 68

Query: 65  GQGDTPDSMKVFWRFLLQKSLSKQ------------------------------------ 88
           G GD P++ + F   L++                                          
Sbjct: 69  GNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFE 128

Query: 89  ---WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGAL 145
               L  VR++VFGLG   Y  F      +D  L +LG   +++   GD+    G E A 
Sbjct: 129 STGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELC--GQEEAF 186

Query: 146 DPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEG 205
             W + +++    +    F  G D  IE+                +N+      +     
Sbjct: 187 RTWAKKVFKAACDV----FCVGDDVNIEK---------------PNNSLISNDRSWKRNK 227

Query: 206 IRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFV-SAAIEYE 264
            R+            LSN + K V   +++  Q L    S +           +  ++Y+
Sbjct: 228 FRLTYVAEAPDLTQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQ 287

Query: 265 VGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK------NYLPDIHKNTTEVPI 318
            GD L + P      V+  I+R    P A   V+ + ++        + +    +   P 
Sbjct: 288 PGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPC 347

Query: 319 KLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRT 378
            +    +  +D+T   P     +  +  AT E EK+RL      +G  +  ++   +  T
Sbjct: 348 TIFQAFKYYLDIT-TPPTPLQLQQFASLATNEKEKQRLL--VLSKGLQEYEEWKWGKNPT 404

Query: 379 VLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK--R 436
           ++EVLE+FPS+QMP   L+  +  L+ R +SISSSP  +P++VHLTV++VS+ T      
Sbjct: 405 MVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGP 464

Query: 437 KRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEER 494
              G+CS WL  +       +P + +       P  P VP IL+GPGTG APFR F ++R
Sbjct: 465 VHHGVCSSWLNRIQA--DDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQR 522

Query: 495 AIQ--SSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP 551
                       P++  FGCR    D +YRE  L    N GVF E      Y A+SR+  
Sbjct: 523 QFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQA-KNKGVFRE-----LYTAYSREPD 576

Query: 552 Q-KVYVQHKMLEQ-SQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDS 608
           + K YVQ  + EQ ++ ++  L  +   IYV G    M +DV    + I++++G+ S + 
Sbjct: 577 RPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV-TMAADVLKAIQRIMTQQGKLSEED 635

Query: 609 AANWLKALQRAGRYHVEAWS 628
           A  ++  L+   RYH + + 
Sbjct: 636 AGVFISRLRDDNRYHEDIFG 655

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* Length = 539

 Score =  459 bits (1184), Expect = e-156
 Identities = 124/567 (21%), Positives = 220/567 (38%), Gaps = 65/567 (11%)

Query: 95  YAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR 154
           +    +      + + V  +L +    +      + G  D +     + A++    ++  
Sbjct: 5   FGALPVASPASLRTDLVKSELLHIESQVELLRFDDSGRKDSE--VLKQNAVNSNQSNVV- 61

Query: 155 RLHQIDPSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETAR 214
                                 L                AS        E +++ L+ + 
Sbjct: 62  --------IEDFESSLTRSVPPLSQ--------------ASLNIPGLPPEYLQVHLQESL 99

Query: 215 SMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 274
                ++S  +   V  + + K   LT + + K     E +  +    Y+ GD   ++  
Sbjct: 100 GQEESQVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICP 159

Query: 275 QDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPD--IHKNTTEVPIKLRTFVELTMDVTS 332
              + V + +QR  L+      V  K   +                 L+      +++  
Sbjct: 160 NSDSEVQSLLQRLQLEDKREHCVLLKIKADTKKKGATLPQHIPAGCSLQFIFTWCLEIR- 218

Query: 333 ASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 392
           A P++ F   +  + +   EK RLQ   S +G  D  ++ +     +L++L  FPS Q P
Sbjct: 219 AIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDACACLLDLLLAFPSCQPP 278

Query: 393 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP--YKRKRTGLCSVWLAGLD 450
           +  L++ +P L+ R +S +SS L HP ++H   ++V + +    +  R G+C+ WLA L 
Sbjct: 279 LSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLV 338

Query: 451 PQQ----------------GIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVE 492
                                 I  + +  +    P  PS+P+I++GPGTG APF GF++
Sbjct: 339 ASVLQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQ 398

Query: 493 ERA---IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 548
            R     Q   G    +  FFGCR++D D+L+R+      L  G+ +        V+FSR
Sbjct: 399 HREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHF-LKHGILTH-----LKVSFSR 452

Query: 549 KQP------QKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKE 601
             P         YVQ  +    Q++  +LL +   IYV G A  M  DV     +I+SKE
Sbjct: 453 DAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQIISKE 512

Query: 602 GEASRDSAANWLKALQRAGRYHVEAWS 628
               +  A   L  L+   RY  + WS
Sbjct: 513 VGVEKLEAMKTLATLKEEKRYLQDIWS 539

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A* Length = 458

 Score =  456 bits (1175), Expect = e-156
 Identities = 129/415 (31%), Positives = 211/415 (50%), Gaps = 23/415 (5%)

Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTF 283
           ++ K      +  N+ L + G+ + + H E +   + I YE GD + + P+ D A V+  
Sbjct: 57  FDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQL 115

Query: 284 IQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVM 343
            +    D D ++++ + + ++         T     L  ++++T       PR      +
Sbjct: 116 GKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALTYYLDIT-----NPPRTNVLYEL 170

Query: 344 SYFATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVP 401
           + +A+   E+E L+  AS   EG++    +  + RR +L +L+D PS++ PID L +L+P
Sbjct: 171 AQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLP 230

Query: 402 PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP----QQGIYI 457
            L+ R +SI+SS   HPN VH+   VV + T   R   G+ + WL   +P         +
Sbjct: 231 RLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALV 290

Query: 458 PAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRN 514
           P + +K    R P   + P+I++GPGTG APF GF++ERA     G      + ++GCR 
Sbjct: 291 PMFVRKSQF-RLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRR 349

Query: 515 ED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLS 573
            D D+LYRE        DG  ++       VAFSR+Q  KVYVQH + +  + +W L+  
Sbjct: 350 SDEDYLYREELAQF-HRDGALTQ-----LNVAFSREQSHKVYVQHLLKQDREHLWKLIEG 403

Query: 574 KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
            A IYV G A  M  DV +TF +IV++ G      A +++K L   GRY ++ WS
Sbjct: 404 GAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 458

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4 Length = 435

 Score =  430 bits (1108), Expect = e-146
 Identities = 128/436 (29%), Positives = 210/436 (48%), Gaps = 30/436 (6%)

Query: 209 QLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFV-SAAIEYEVGD 267
            +  A  ++ G LSN + K V   +++  Q L    S +           +  ++Y+ GD
Sbjct: 11  YVAEAPDLTQG-LSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGD 69

Query: 268 VLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK------NYLPDIHKNTTEVPIKLR 321
            L + P      V+  I+R    P A   V+ + ++        + +    +   P  + 
Sbjct: 70  HLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIF 129

Query: 322 TFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLE 381
              +  +D+T+  P     +  +  AT E EK+RL      +G  +  ++   +  T++E
Sbjct: 130 QAFKYYLDITT-PPTPLQLQQFASLATNEKEKQRLL--VLSKGLQEYEEWKWGKNPTMVE 186

Query: 382 VLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK--RKRT 439
           VLE+FPS+QMP   L+  +  L+ R +SISSSP  +P++VHLTV++VS+ T         
Sbjct: 187 VLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHH 246

Query: 440 GLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERA-- 495
           G+CS WL  +       +P + +       P  P VP IL+GPGTG APFR F ++R   
Sbjct: 247 GVCSSWLNRIQA--DDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFD 304

Query: 496 IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-K 553
           IQ       P++  FGCR    D +YRE  L    N GVF E      Y A+SR+  + K
Sbjct: 305 IQHKGMNPCPMVLVFGCRQSKIDHIYREETLQA-KNKGVFRE-----LYTAYSREPDRPK 358

Query: 554 VYVQHKMLEQ-SQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAAN 611
            YVQ  + EQ ++ ++  L  +   IYV G    M +DV    + I++++G+ S + A  
Sbjct: 359 KYVQDVLQEQLAESVYRALKEQGGHIYVCGDV-TMAADVLKAIQRIMTQQGKLSEEDAGV 417

Query: 612 WLKALQRAGRYHVEAW 627
           ++  L+   RYH + +
Sbjct: 418 FISRLRDDNRYHEDIF 433

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A* Length = 393

 Score =  420 bits (1081), Expect = e-143
 Identities = 113/408 (27%), Positives = 179/408 (43%), Gaps = 25/408 (6%)

Query: 227 KAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQR 286
                  ++ ++ L + GS +   H E E +     Y+ GD L ++P      V+    R
Sbjct: 4   HGAFSTNVVASKELQQPGSARSTRHLEIE-LPKEASYQEGDHLGVIPRNYEGIVNRVTAR 62

Query: 287 CNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYF 346
             LD    I ++ +E K  L  +    T    +L  +VEL          R     M+  
Sbjct: 63  FGLDASQQIRLEAEEEK--LAHLPLAKTVSVEELLQYVELQ-----DPVTRTQLRAMAAK 115

Query: 347 ATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTR 406
                 K  L+     +   +       +R T+LE+LE +P+ +M     + L+P ++ R
Sbjct: 116 TVCPPHKVELEALLEKQAYKE---QVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPR 172

Query: 407 AFSISSSPLAHPNQVHLTVSVVSWTTPY-KRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS 465
            +SISSSP     Q  +TVSVVS        +  G+ S +LA L     I       +  
Sbjct: 173 YYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSE 232

Query: 466 LPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNED-DFLYR 521
               P  P  PLI++GPGTG APFRGFV+ R      G        +FGCR+   D+LY+
Sbjct: 233 F-TLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQ 291

Query: 522 ELWLSHSLNDGVFSEAKGGGFYVAFSRK-QPQKVYVQHKMLEQSQRIWNLLLSKASIYVA 580
           E    ++ ++G+ +       + AFSR     K YVQH M +  +++  LL   A  Y+ 
Sbjct: 292 EEL-ENAQSEGIIT------LHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYIC 344

Query: 581 GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           G  ++M   V +T  +  +   + S   A  WL+ L+  GRY  + W+
Sbjct: 345 GDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWA 392

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A* Length = 374

 Score =  406 bits (1047), Expect = e-138
 Identities = 117/409 (28%), Positives = 183/409 (44%), Gaps = 41/409 (10%)

Query: 222 SNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVD 281
           S Y+  A     +  NQ +T   S KDV H E +   + + Y+ GD L +    DPA V 
Sbjct: 4   SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVK 63

Query: 282 TFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFE 341
             ++   L  D  +TV+ K +   L +           L+   ELT             E
Sbjct: 64  ELVELLWLKGDEPVTVEGKTLP--LNEA----------LQWHFELT------VNTANIVE 105

Query: 342 VMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVP 401
               +AT    +  L                      +++++  F   Q+  + L+ L+ 
Sbjct: 106 ---NYATLTRSETLLPLVGDKAKLQHY-----AATTPIVDMVR-FSPAQLDAEALINLLR 156

Query: 402 PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF 461
           PL  R +SI+SS     N+VH+TV VV +     R R G  S +LA    ++G  +  + 
Sbjct: 157 PLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEGE-VRVFI 214

Query: 462 QKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DF 518
           +     R P  P  P+I+IGPGTG APFR F+++RA   + G       FFG  +   DF
Sbjct: 215 EHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKN---WLFFGNPHFTEDF 271

Query: 519 LYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIY 578
           LY+  W  + + +GV +        +A+SR Q +KVYVQ K+ EQ   +W  +   A IY
Sbjct: 272 LYQVEWQRY-VKEGVLTR-----IDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIY 325

Query: 579 VAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
           V G A +M  DV     E++++ G    ++A  +L  L+   RY  + +
Sbjct: 326 VCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 374

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* Length = 314

 Score =  252 bits (645), Expect = 4e-79
 Identities = 45/251 (17%), Positives = 85/251 (33%), Gaps = 21/251 (8%)

Query: 387 PSVQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRK-RTGLC 442
           P                  R +SI+S   +     + +   +   +           G+C
Sbjct: 75  PGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVC 134

Query: 443 SVWLAGLDPQQGIYIPAWFQKG-SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSG 501
           S ++  L P   + +     K   LP    S  ++ +  GTG APF G  EE        
Sbjct: 135 SNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLIK 194

Query: 502 PAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-----KVYV 556
               I   +G    D+ +  + +L    +     +        A SR++       ++Y+
Sbjct: 195 FTGNITLVYGAPYSDELVMMD-YLKGLESKHKNFK-----LITAISREEKNSFDGGRMYI 248

Query: 557 QHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKAL 616
            H++ EQ++ +  +L      Y+ G    M   V    ++I    G         +   L
Sbjct: 249 SHRVREQAEAVKKILNGGGRFYICGGPKGMEKGVIEEIQKISGNTGTYE-----EFKHHL 303

Query: 617 QRAGRYHVEAW 627
           + A +  VE +
Sbjct: 304 EGAHQLFVETY 314

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... Length = 304

 Score =  244 bits (624), Expect = 4e-76
 Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 25/260 (9%)

Query: 383 LEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYK-RKR 438
             +  S+ +    + +   P K R +SI+S+          + L V  + +  P      
Sbjct: 55  YIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETV 114

Query: 439 TGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEER---- 494
            G+CS +L  ++P   + I     K  L    P   +I++  GTG  P R ++       
Sbjct: 115 YGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDA 174

Query: 495 --AIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ 552
             A              FG     + LY+E            +         A SR+Q  
Sbjct: 175 ERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEI-QQKYPDN----FRLTYAISREQKN 229

Query: 553 ----KVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRD 607
               ++Y+Q ++ E + ++W L+ + K   Y+ G    M   + +      +KEG     
Sbjct: 230 PQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPP-PMEEGIDAALSAAAAKEGVT--- 285

Query: 608 SAANWLKALQRAGRYHVEAW 627
             +++ K L++AGR+HVE +
Sbjct: 286 -WSDYQKDLKKAGRWHVETY 304

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* Length = 311

 Score =  241 bits (618), Expect = 4e-75
 Identities = 66/273 (24%), Positives = 102/273 (37%), Gaps = 31/273 (11%)

Query: 376 RRTVLEVLEDFP-------SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVV 428
              V++   + P        V  P +   +   P   R +SI+S+              V
Sbjct: 49  CHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCV 108

Query: 429 SWTTPYK-------RKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPRPPPSVPLILIGP 480
                Y          + G+CS +L    P   I +     K   LP   P+   I+I  
Sbjct: 109 RRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIAT 168

Query: 481 GTGCAPFRGFVEERAIQSSSGPAA--PIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAK 538
           GTG APFRG++    ++             F G  N D  LY E + S+           
Sbjct: 169 GTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFR-- 226

Query: 539 GGGFYVAFSRKQPQ----KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF 594
              +  A SR+Q      K+YVQ K+ E S  I+ LL   A IY  G    M   +  T 
Sbjct: 227 ---YDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLK-GMMPGIQDTL 282

Query: 595 EEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
           +++  + GE+        L  L++  ++HVE +
Sbjct: 283 KKVAERRGES----WDQKLAQLKKNKQWHVEVY 311

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A* Length = 314

 Score =  241 bits (616), Expect = 9e-75
 Identities = 58/257 (22%), Positives = 101/257 (39%), Gaps = 24/257 (9%)

Query: 383 LEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRT 439
             +  SV +  D   +   P K R +SI+SS L        V L V  + +T        
Sbjct: 70  YREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIK 129

Query: 440 GLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQ 497
           G+CS +L  L P   + +      G     P  P+  +I++G GTG APFR F+ +   +
Sbjct: 130 GVCSNFLCDLKPGAEVKL--TGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFE 187

Query: 498 SSSGPAA--PIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP---- 551
                        F G       LY+E +          +         A SR+Q     
Sbjct: 188 KHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKM-KEKAPDNFR----LDFAVSREQTNEKG 242

Query: 552 QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 610
           +K+Y+Q +M + +  +W +L      +Y+ G    M   +      + + EG        
Sbjct: 243 EKMYIQTRMAQYAVELWEMLKKDNTYVYMCG-LKGMEKGIDDIMVSLAAAEGID----WI 297

Query: 611 NWLKALQRAGRYHVEAW 627
            + + L++A +++VE +
Sbjct: 298 EYKRQLKKAEQWNVEVY 314

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316

 Score =  220 bits (563), Expect = 4e-67
 Identities = 52/289 (17%), Positives = 88/289 (30%), Gaps = 42/289 (14%)

Query: 357 QYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLA 416
                    ++L      +      ++            L  +      R +SISSS   
Sbjct: 52  HTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSSNNM 111

Query: 417 HPNQVHLTVSVVSWTTP-YKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS--LPRPP--P 471
               V + +     T         G CS ++  L       I      G   LP      
Sbjct: 112 ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKI--NDDIYLTGAHGYFNLPNDAIQK 169

Query: 472 SVPLILIGPGTGCAPFRGFVEERA-------IQSSSGPAAPIIFFFGCRNEDDFLYRELW 524
           +   I I  GTG +P+  F+++            +S     I  ++G  NED  LY    
Sbjct: 170 NTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNEL 229

Query: 525 LSHSLNDGVFSEAKGGGF--YVAFSRKQ---PQKVYVQHKMLEQSQRIWNLLL-SKASIY 578
                    F +        +  FS KQ       YVQ ++ ++     NL    K  +Y
Sbjct: 230 EY-------FQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELY 282

Query: 579 VAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
           + G  + +   V     +I+    +             ++  R HVE +
Sbjct: 283 ICGKKS-IRYKV----MDILKSHDQFD----------EKKKKRVHVEVY 316

>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 Length = 167

 Score =  212 bits (542), Expect = 6e-66
 Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 6/161 (3%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
            + I+ ASQTGNA   AE +  +       V +    DY  + +  E  +I V ST G+G
Sbjct: 11  GITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEG 70

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           + P+      +FL  K      LE   +AVF LGD+ Y+ F    K  D++L +LG   +
Sbjct: 71  EPPEEAVALHKFLFSKKA--PKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERL 128

Query: 128 VERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGP 168
           ++R   D +    Y+ A   W   +   L    P   P   
Sbjct: 129 LDRVDADVE----YQAAASEWRARVVDALKSRAPVAAPSQS 165

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402

 Score =  219 bits (560), Expect = 1e-65
 Identities = 51/257 (19%), Positives = 94/257 (36%), Gaps = 24/257 (9%)

Query: 384 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYK-RKRT 439
            +  S+ +      +   P K R +SI+S+          V L V  + +  P       
Sbjct: 157 LEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVY 216

Query: 440 GLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQ 497
           G+CS +L  L       +      G     P      ++++  GTG APFR F+     +
Sbjct: 217 GVCSTYLCNLPVGTDD-VKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKE 275

Query: 498 --SSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ--- 552
                         FG     + LY++ +      +   +         A SR+Q     
Sbjct: 276 QHEDYKFKGKAWLIFGVPYTANILYKDDFEKM-AAENPDNFR----LTYAISREQKTADG 330

Query: 553 -KVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 610
            KVYVQ ++ E +  ++ ++      +Y+ G    M   +  TF     K G     +  
Sbjct: 331 GKVYVQSRVSEYADELFEMIQKPNTHVYMCG-LKGMQPPIDETFTAEAEKRGL----NWE 385

Query: 611 NWLKALQRAGRYHVEAW 627
              +++++  R+HVE +
Sbjct: 386 EMRRSMKKEHRWHVEVY 402

>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A Length = 147

 Score =  195 bits (497), Expect = 1e-59
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 5/149 (3%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
            + ++  S  G A   AE +  + E  G       +       LP     + + ST G G
Sbjct: 3   DITLISGSTLGGAEYVAEHLAEKLEEAGFTTET--LHGPLLEDLPASGIWLVISSTHGAG 60

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           D PD++  F+  L ++      L  VR+   G+G   Y  F     KL+  L + GA   
Sbjct: 61  DIPDNLSPFYEALQEQKPD---LSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQT 117

Query: 128 VERGLGDDQHPSGYEGALDPWMRSLWRRL 156
            E    +       E   + W+ S    L
Sbjct: 118 GETLKINILDHDIPEDPAEEWLGSWVNLL 146

>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, alternative splicing, calcium, calmodulin-binding, FAD, FMN, heme, iron, metal-binding; HET: FMN; 2.50A {Homo sapiens} Length = 219

 Score =  195 bits (498), Expect = 8e-59
 Identities = 58/199 (29%), Positives = 86/199 (43%), Gaps = 16/199 (8%)

Query: 3   EEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVS 62
              R ++ IL+A++TG +   A  +G        P VV  +D Y   CL EE  ++ V S
Sbjct: 37  MASRVRVTILFATETGKSEALAWDLGALFSCAFNPKVV-CMDKYRLSCLEEERLLLVVTS 95

Query: 63  TTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122
           T G GD P + +   + L      K+     RYAVFGLG S Y +F   A  +D +L  L
Sbjct: 96  TFGNGDCPGNGEKLKKSLFML---KELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHL 152

Query: 123 GATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDHVIEEMKLIDQPK 182
           GA+ +   G GD+    G E A   W    ++   +     F       I+       PK
Sbjct: 153 GASQLTPMGEGDELS--GQEDAFRSWAVQTFKAACET----FDVRGKQHIQI------PK 200

Query: 183 VHITYHSIDNAASRLSNAS 201
           ++ +  + D    RL   S
Sbjct: 201 LYTSNVTWDPHHYRLVQDS 219

>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1 Length = 191

 Score =  189 bits (483), Expect = 6e-57
 Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 7/155 (4%)

Query: 3   EEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVS 62
                 LL+LY S  G A   A  +   +  +G    V  +D +    LP E  V+  V+
Sbjct: 18  NAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGN-LPREGAVLI-VT 75

Query: 63  TTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLD 121
            +  G  PD+ K F  +L     S   ++GVRY+VFG GD  +   +  V   +D  L  
Sbjct: 76  ASYNGHPPDNAKQFVDWL--DQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAA 133

Query: 122 LGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156
            GA  + +RG  D      +EG  + W   +W  +
Sbjct: 134 KGAENIADRGEADASD--DFEGTYEEWREHMWSDV 166

>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... Length = 147

 Score =  163 bits (414), Expect = 1e-47
 Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 9/152 (5%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E  D V+   ST G 
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61

Query: 67  G--DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGA 124
              +  D     +      SL +   +G + A FG GDS ++ F      ++ +L +LGA
Sbjct: 62  DSIELQDDFIPLF-----DSLEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGA 116

Query: 125 TAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156
             V +  L  D  P      +  W   +   +
Sbjct: 117 EIVQDG-LRIDGDPRAARDDIVGWAHDVRGAI 147

>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* Length = 148

 Score =  126 bits (319), Expect = 2e-34
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 9/152 (5%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQ 66
           K+LI++ S TGN    A+++       G  V +    D  A  L +  D V+F  S  G 
Sbjct: 3   KVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGM 62

Query: 67  GDT--PDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGA 124
            D    D     +     +   +  L G + A F  GD  Y+ F      ++ R  +LGA
Sbjct: 63  EDLEMQDDFLSLF-----EEFDRIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGA 117

Query: 125 TAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156
           T + E  L  +   S    A+  +   + ++L
Sbjct: 118 TIIAEG-LKMEGDASNDPEAVASFAEDVLKQL 148

>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1 Length = 173

 Score =  119 bits (301), Expect = 1e-31
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+ I +++ TGN  + A+ IG+    +     +   D  D + L + D +     T   G
Sbjct: 1   KIGIFFSTSTGNTTEVADFIGKTLGAKAD-APIDVDDVTDPQALKDYDLLFLGAPTWNTG 59

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFV--AKKLDNRLLDLGAT 125
              +     W   L   L +  ++ +  A+FGLGD+     NF    +++ +     GA 
Sbjct: 60  ADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAK 119

Query: 126 AVVERGLGDDQH 137
            V      D  +
Sbjct: 120 PVGFSNPDDYDY 131

>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1 Length = 179

 Score = 94.3 bits (234), Expect = 1e-22
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+ + + S TG     A+ I +  +          V+   A    +   +I    T G+G
Sbjct: 2   KIGLFFGSNTGKTRKVAKSIKKRFDDETM-SDALNVNRVSAEDFAQYQFLILGTPTLGEG 60

Query: 68  DTPDSMKVFWRFLLQ---KSLSKQWLEGVRYAVFGLGDSGYQKFNFV--AKKLDNRLLDL 122
           + P           +     +      G   A+FGLGD      N++    +L +   D 
Sbjct: 61  ELPGLSSDAENESWEEFLPKIEGLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDR 120

Query: 123 GATAVVER 130
           GA  V   
Sbjct: 121 GAKIVGSW 128

>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus} Length = 182

 Score = 93.9 bits (233), Expect = 2e-22
 Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 6/128 (4%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+ + + S TG     A++I ++            V+  D       D +I    T G G
Sbjct: 3   KIGLFFGSDTGTTRKIAKQI-KDMFDDEVMAKPLNVNRADVADFMAYDFLILGTPTLGDG 61

Query: 68  DTPDSMKVFWRFLLQ---KSLSKQWLEGVRYAVFGLGDSG--YQKFNFVAKKLDNRLLDL 122
             P           +     ++ Q   G   A+FGLGD      +F      L     D 
Sbjct: 62  QLPGLSANAASESWEEFLPRIADQDFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDR 121

Query: 123 GATAVVER 130
           GA  V   
Sbjct: 122 GANVVGRW 129

>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A* Length = 169

 Score = 92.7 bits (230), Expect = 5e-22
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 8/132 (6%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+ + Y +QTG     AE I +E       V +  + + DA  L   D +I    T   G
Sbjct: 2   KIGLFYGTQTGVTQTIAESIQQEFGGESI-VDLNDIANADASDLNAYDYLIIGCPTWNVG 60

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG--YQKFNFVAKKLDNRLLDLGAT 125
           +     +  +       L     +G + A FG GD       F      L+ ++  LG+ 
Sbjct: 61  ELQSDWEGIY-----DDLDSVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQ 115

Query: 126 AVVERGLGDDQH 137
            V    +     
Sbjct: 116 TVGYWPIEGYDF 127

>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A* Length = 175

 Score = 88.8 bits (220), Expect = 1e-20
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 9/125 (7%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
              I + S TGN  + A+ I ++  +      V  +       L   D ++  + T   G
Sbjct: 2   ITGIFFGSDTGNTENIAKMIQKQLGKDV--ADVHDIAKSSKEDLEAYDILLLGIPTWYYG 59

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG--YQKFNFVAKKLDNRLLDLGAT 125
           +       F+  L +   +     G   A+FG GD     + F      + + +   GAT
Sbjct: 60  EAQCDWDDFFPTLEEIDFN-----GKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGAT 114

Query: 126 AVVER 130
            V   
Sbjct: 115 IVGHW 119

>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A* Length = 164

 Score = 86.2 bits (213), Expect = 7e-20
 Identities = 25/130 (19%), Positives = 35/130 (26%), Gaps = 9/130 (6%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+ I + + +GNA   AE+I +          V  V             VI V  T G G
Sbjct: 3   KIGIFFGTDSGNAEAIAEKISKAIGN----AEVVDVAKASKEQFNSFTKVILVAPTAGAG 58

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           D     + F       +L           + GLGD       F                V
Sbjct: 59  DLQTDWEDFLG-----TLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKAGKVV 113

Query: 128 VERGLGDDQH 137
            +        
Sbjct: 114 GQTSTDGYHF 123

>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A* Length = 169

 Score = 85.7 bits (212), Expect = 1e-19
 Identities = 26/129 (20%), Positives = 39/129 (30%), Gaps = 9/129 (6%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+ + Y +QTG     AE I  E       V +  V   +   L +   +I    T   G
Sbjct: 3   KIGLFYGTQTGKTESVAEIIRDEFGNDV--VTLHDVSQAEVTDLNDYQYLIIGCPTLNIG 60

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS--GYQKFNFVAKKLDNRLLDLGAT 125
           +     +  +       L      G   A FG GD       F      L+ ++   G  
Sbjct: 61  ELQSDWEGLY-----SELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGK 115

Query: 126 AVVERGLGD 134
            V       
Sbjct: 116 TVGYWSTDG 124

>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 Length = 137

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 8/120 (6%)

Query: 10  LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDT 69
            I+Y S TGN    A  I    +  G  V     +D +   +  +D ++      G  + 
Sbjct: 3   EIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEEL 62

Query: 70  PDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129
            DS+   +   L   L  +     +  +FG    G  ++         R  D GAT +  
Sbjct: 63  EDSVVEPFFTDLAPKLKGK-----KVGLFGSYGWGSGEW---MDAWKQRTEDTGATVIGT 114

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 34/185 (18%), Positives = 58/185 (31%), Gaps = 35/185 (18%)

Query: 404 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYI--PAW 460
           +TR++S SS P          V         +    G  S +L+        +    P  
Sbjct: 154 ETRSYSFSSQP--GNRLTGFVV---------RNVPQGKMSEYLSVQAKAGDKMSFTGPF- 201

Query: 461 FQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLY 520
              GS        P++++  GTG APF   ++        G   P+   FG   + D + 
Sbjct: 202 ---GSFYLRDVKRPVLMLAGGTGIAPFLSMLQVLE---QKGSEHPVRLVFGVTQDCDLVA 255

Query: 521 RELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ---KVYVQHKMLEQSQRIWNLLLSKASI 577
            E   +       F       +    +  + Q   K YV   +         L   +  +
Sbjct: 256 LEQLDALQQKLPWFE------YRTVVAHAESQHERKGYVTGHIEYD-----WLNGGEVDV 304

Query: 578 YVAGS 582
           Y+ G 
Sbjct: 305 YLCGP 309

>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* Length = 138

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 8/120 (6%)

Query: 10  LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDT 69
            I+Y S TGN    AE I +     G  V    V D +   L  ED +I   S       
Sbjct: 2   KIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVL 61

Query: 70  PDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129
            +     +   +++  +K  + G + A+FG   S         +  + R+   G   V  
Sbjct: 62  EE---SEFEPFIEEISTK--ISGKKVALFG---SYGWGDGKWMRDFEERMNGYGCVVVET 113

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 27/126 (21%)

Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK 463
           +R++S ++ P     ++   +         +    G  S +L       Q + +      
Sbjct: 60  SRSYSPANLP-NPEGRLEFLI---------RVLPEGRFSDYLRNDARVGQVLSV------ 103

Query: 464 GSLP------RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDD 517
              P      +     P   +  GTG AP    V +               +FG   E +
Sbjct: 104 -KGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQ---EWTAPNETRIYFGVNTEPE 159

Query: 518 FLYREL 523
             Y + 
Sbjct: 160 LFYIDE 165

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232

 Score = 58.3 bits (142), Expect = 8e-10
 Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 28/136 (20%)

Query: 397 VQL-VPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQG 454
           + + +     R FS++S+P      + L +               L +  +   +     
Sbjct: 36  LMVVMDERDKRPFSMASTP-DEKGFIELHI---------GASEINLYAKAVMDRILKDHQ 85

Query: 455 IYIPAWFQKGSLP------RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIF 508
           I +        +P      R     P+ILI  GTG +  R  +       +  P   I  
Sbjct: 86  IVV-------DIPHGEAWLRDDEERPMILIAGGTGFSYARSILLT---ALARNPNRDITI 135

Query: 509 FFGCRNEDDFLYRELW 524
           ++G R E         
Sbjct: 136 YWGGREEQHLYDLCEL 151

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 25/142 (17%), Positives = 39/142 (27%), Gaps = 21/142 (14%)

Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI----PAW 460
            RA+SI+S          L            +   G  +  L  +   + I +       
Sbjct: 63  MRAYSIASPA----WDEELEFYS-------IKVPDGPLTSRLQHIKVGEQIILRPKPVGT 111

Query: 461 FQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLY 520
                +    P   L  +  GTG APF   + E            +I    CR   +  Y
Sbjct: 112 L---VIDALLPGKRLWFLATGTGIAPFASLMREPEAY---EKFDEVIMMHACRTVAELEY 165

Query: 521 RELWLSHSLNDGVFSEAKGGGF 542
               +     D +  E   G  
Sbjct: 166 GRQLVEALQEDPLIGELVEGKL 187

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 4e-08
 Identities = 64/409 (15%), Positives = 111/409 (27%), Gaps = 115/409 (28%)

Query: 250 HHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQ--RCNLDPDALITV-QHKEMKNYL 306
           HH +FE  +   +Y+  D+L +         D F+    C    D   ++   +E+ + +
Sbjct: 5   HHMDFE--TGEHQYQYKDILSVF-------EDAFVDNFDCKDVQDMPKSILSKEEIDHII 55

Query: 307 --PDIHKNTTEVPIKLRT--------FVELTMDVTSASPRRYFFEVMSYFATAEHEKERL 356
              D    T  +   L +        FVE  +         Y F +MS   T E  +  +
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR------INYKF-LMSPIKT-EQRQPSM 107

Query: 357 QYFASPEGRDDLY-------KYN------QKERRTVLEVLEDFPSVQ---MP---IDWLV 397
                 E RD LY       KYN        + R  L  L    +V    +      W+ 
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 398 QLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI 457
             V      ++ +         ++        W                  L+  Q +  
Sbjct: 168 LDV----CLSYKVQC---KMDFKIF-------WLNLKNCNSPETV------LEMLQKLLY 207

Query: 458 PAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEE--RAIQSSSGPAAPII-------- 507
                  S      ++ L                 E  R ++S       ++        
Sbjct: 208 QIDPNWTSRSDHSSNIKL----------RIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 508 ----FFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQ 563
               F   C+           L  +    V  +          S           ++   
Sbjct: 258 AWNAFNLSCKI----------LLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKS- 305

Query: 564 SQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANW 612
                  LL K   Y+      +P +V +T    +S   E+ RD  A W
Sbjct: 306 -------LLLK---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 9e-08
 Identities = 71/497 (14%), Positives = 134/497 (26%), Gaps = 151/497 (30%)

Query: 16  QTGNALDAAERIGRESERRGCPVVVRPVD-----DYD-------ARCL-PEEDTVIFVVS 62
            + +A+    R+      +   +V + V+     +Y             P   T +++  
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 63  TTG-QGDTPDSMKVF-WRFLLQKSLSKQWLEGVRYA----VFGLGDSGYQKFNFVAKKL- 115
                 D     K    R      L +Q L  +R A    + G+  SG  K         
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSG--KTWVALDVCL 172

Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSF-----FPQGPDH 170
             ++       +    L +   P       +  +  L + L+QIDP++            
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSP-------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 171 VIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRM------QLETARSMS-AGKLSN 223
            I  ++   + +  +     +N    L N  + +           L T R       LS 
Sbjct: 226 RIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 224 YNNKAVC----------------FLK------------MIKNQPLTKSGSGKDVH----- 250
                +                  LK            ++   P   S   + +      
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 251 -----HFEFEFVSAAIE--------------YEV-----------GDVLEIL----PSQD 276
                H   + ++  IE              ++              +L ++       D
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 277 PAA-VDTFIQRCNLDPDALITVQHKEMKNYLPDIH---KNTTEVPIKL-RTFVE-----L 326
               V+   +        L+  Q KE    +P I+   K   E    L R+ V+      
Sbjct: 404 VMVVVNKLHKYS------LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 327 TMDVTSASP---RRYFFEVMSY-FATAEHEKE----RLQYFASPEGRDDLYKYNQKERRT 378
           T D     P    +YF+  + +     EH +     R+ +        D     QK R  
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-------DFRFLEQKIRHD 510

Query: 379 ---------VLEVLEDF 386
                    +L  L+  
Sbjct: 511 STAWNASGSILNTLQQL 527

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290

 Score = 53.8 bits (129), Expect = 6e-08
 Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 396 LVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVS------WTTPYKRKRTGLCSVWLAGL 449
           L         RA+S+++ P A  N + L V + +              + G+ S ++  L
Sbjct: 77  LTCKNEEETVRAYSMANYP-AEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSL 135

Query: 450 DPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF 509
            P   + +   +  G          ++ IG G G AP R  +              + ++
Sbjct: 136 KPGDKVMMSGPY--GDFHIQDTDAEMLYIGGGAGMAPLRAQILHLFRTL--KTGRKVSYW 191

Query: 510 FGCRNEDDFLYREL 523
           +G R++++  Y E 
Sbjct: 192 YGARSKNEIFYEED 205

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 18/151 (11%)

Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI--PAWFQ 462
            RA+SI+S    +   +      V           G  +  L  L     + +       
Sbjct: 49  MRAYSIASPN--YEEHLEFFSIKV---------PDGPLTSRLQHLKEGDELMVSRKPT-G 96

Query: 463 KGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 522
                   P   L L+  GTG APF   +++            +I   G R   +  Y +
Sbjct: 97  TLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPET---YERYEKVILVHGVRWVSELAYAD 153

Query: 523 LWLSHSLNDGVFSEAKGGGF-YVAFSRKQPQ 552
                      F +       Y     ++P 
Sbjct: 154 FITKVLPEHEYFGDQVKEKLIYYPLVTREPF 184

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 28/140 (20%)

Query: 388 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA 447
            V +  +      P  + R +S++  P    +     ++V       KR+  G  S WL 
Sbjct: 190 GVWLKPEGF----PHQEIRQYSLTRKP----DGKGYRIAV-------KREEGGQVSNWLH 234

Query: 448 GLDPQQG----IYIPAWFQKGSL-PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGP 502
                 G    +  PA    G          P+ LI  G G  P    ++  A    +G 
Sbjct: 235 N-HANVGDVVKLVAPA----GDFFMAVADDTPVTLISAGVGQTPMLAMLDTLA---KAGH 286

Query: 503 AAPIIFFFGCRNEDDFLYRE 522
            A + +F    N D   + +
Sbjct: 287 TAQVNWFHAAENGDVHAFAD 306

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 19/148 (12%)

Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI--PAWFQ 462
           TRA+SI S       + HL            + + G  +  L  L     + I       
Sbjct: 65  TRAYSIVSPN----YEEHLEFFS-------IKVQNGPLTSRLQHLKVGDPVLIGKKPT-G 112

Query: 463 KGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 522
                   P   L ++  GTG APF   + +  I         ++    CR + +  Y +
Sbjct: 113 TLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIY---ERFDKVVLTHTCRLKGELAYMD 169

Query: 523 LWLSHSLNDGVFSEAKGGGF--YVAFSR 548
                        +        Y   +R
Sbjct: 170 YIKHDLPGHEYLGDVIREKLVYYPTVTR 197

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 31/145 (21%), Positives = 46/145 (31%), Gaps = 34/145 (23%)

Query: 388 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-----GLC 442
           SV + +  L       + R +S+S  P    N     +SV       KR+       G  
Sbjct: 192 SVAIDVPAL----GLQQIRQYSLSDMP----NGRTYRISV-------KREGGGPQPPGYV 236

Query: 443 SVWLAGLDPQQG----IYIPAWFQKGSL-PRPPPSVPLILIGPGTGCAPFRGFVEERAIQ 497
           S  L       G    +  P     GS         P++LI  G G  P    ++     
Sbjct: 237 SNLLHD-HVNVGDQVKLAAPY----GSFHIDVDAKTPIVLISGGVGLTPMVSMLKVAL-- 289

Query: 498 SSSGPAAPIIFFFGCRNEDDFLYRE 522
               P   ++F  G RN      R+
Sbjct: 290 --QAPPRQVVFVHGARNSAVHAMRD 312

>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} Length = 161

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 16/126 (12%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA----RCLPEEDTVIFVVST 63
            +LI Y S  G +   ++ IGR   + G  V +  +   D       +     ++     
Sbjct: 2   SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPP 61

Query: 64  TGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLG 123
                  +++      +   + +KQ        +F       +        L  +  +LG
Sbjct: 62  ---SQPSEAVATALSTIFAAAHNKQA-----IGLFDSYGGDDE----PIDALLAQFRNLG 109

Query: 124 ATAVVE 129
                 
Sbjct: 110 LHTAFP 115

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 11/127 (8%)

Query: 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI------- 457
            RA++ +S          L V V       K    GL + +L  L     I +       
Sbjct: 61  MRAYTPTSMVDE-IGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHV 119

Query: 458 --PAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNE 515
                       +   +  L +I  G+G  P    + +  ++        +   +  R E
Sbjct: 120 EYTGRGSFVINGKQRNARRLAMICGGSGITPMYQ-IIQAVLRDQPEDHTEMHLVYANRTE 178

Query: 516 DDFLYRE 522
           DD L R+
Sbjct: 179 DDILLRD 185

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* Length = 248

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/121 (19%), Positives = 36/121 (29%), Gaps = 19/121 (15%)

Query: 406 RAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI--PAW-FQ 462
           RA+S  +SP    +   L   +            G  S  LA L P   + +   A  F 
Sbjct: 50  RAYSYVNSP----DNPDLEFYL-------VTVPDGKLSPRLAALKPGDEVQVVSEAAGF- 97

Query: 463 KGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 522
              L   P    L ++  GT   P+   +              ++     R   D  Y  
Sbjct: 98  -FVLDEVPHCETLWMLATGTAIGPYLSILRLGKDL---DRFKNLVLVHAARYAADLSYLP 153

Query: 523 L 523
           L
Sbjct: 154 L 154

>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7 Length = 139

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 23/112 (20%)

Query: 9   LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGD 68
           + I++ S+TGN      + G +  R+                   +   + V  TT  G 
Sbjct: 11  VQIIFDSKTGNVQRFVNKTGFQQIRKVDE------------MDHVDTPFVLVTYTTNFGQ 58

Query: 69  TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRL 119
            P S + F    L+K         +   V   G+  +   F   A  +  + 
Sbjct: 59  VPASTQSF----LEK------YAHLLLGVAASGNKVWGDNFAKSADTISRQY 100

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} Length = 243

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 27/121 (22%), Positives = 40/121 (33%), Gaps = 21/121 (17%)

Query: 406 RAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS 465
           R ++  SS         L +         K    G  S ++  L+P   + +     +G 
Sbjct: 61  RPYTPVSSD-DEKGYFDLII---------KVYEKGQMSQYIDHLNPGDFLQV-----RGP 105

Query: 466 LPR----PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYR 521
             +    P     + +I  GTG  P       RAI  +      I   F   NEDD L R
Sbjct: 106 KGQFDYKPNMVKEMGMIAGGTGITPMLQVA--RAIIKNPKEKTIINLIFANVNEDDILLR 163

Query: 522 E 522
            
Sbjct: 164 T 164

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* Length = 275

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 29/132 (21%), Positives = 38/132 (28%), Gaps = 18/132 (13%)

Query: 406 RAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGI---------- 455
           R ++  SS       V L + V    T  K    G  S +L  +     I          
Sbjct: 66  RPYTPISSDDD-KGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLV 124

Query: 456 YIPAW-----FQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFF 510
           Y           K S P       + +I  GTG  P    +  RAI             F
Sbjct: 125 YQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVI--RAIMKDPDDHTVCHLLF 182

Query: 511 GCRNEDDFLYRE 522
             + E D L R 
Sbjct: 183 ANQTEKDILLRP 194

>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 Length = 188

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 8  KLLILYASQTGNALDAAERIGRESER-RGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQ 66
          K+L++Y ++TGN    AE +   +    G  V ++ VD+     +   D +    S T  
Sbjct: 6  KVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAV-GSPTNM 64

Query: 67 GDTPDSMKVFWRFLLQKSLSKQW--LEGVRYAVF 98
          G     MK F+       L   W  ++G     F
Sbjct: 65 GLVSWKMKRFF----DDVLGDLWGEIDGKIACAF 94

>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A* Length = 119

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 24/112 (21%)

Query: 9   LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGD 68
           +L+ Y S TGN      ++   + + G               L  ++  I +  TTG G+
Sbjct: 1   MLVAYDSMTGNVKRFIHKLNMPAVQIG-------------EDLVIDEDFILITYTTGFGN 47

Query: 69  TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRL 119
            P+ +  F    L+++  K         V   G+  +   F   A K+  + 
Sbjct: 48  VPERVLEF----LERNNEKL------KGVSASGNRNWGDMFGASADKISAKY 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	628
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	100.0
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	100.0
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	100.0
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	100.0
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	100.0
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	100.0
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	100.0
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	100.0
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	100.0
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	100.0
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	100.0
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	100.0
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	100.0
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	100.0
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	100.0
3hr4_A	219	Nitric oxide synthase, inducible; inducible nitric	99.98
1bvy_F	191	Protein (cytochrome P450 BM-3); fatty acid monooxy	99.95
1ykg_A	167	SIR-FP, sulfite reductase [NADPH] flavoprotein alp	99.94
2hna_A	147	Protein MIOC, flavodoxin; alpha-beta sandwich, fla	99.94
1tvc_A	250	Methane monooxygenase component C, methane monooxy	99.94
3f6r_A	148	Flavodoxin; FMN binding, oxidized, electron transp	99.93
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	99.93
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	99.93
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	99.93
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	99.92
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	99.92
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	99.92
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	99.92
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	99.92
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	99.91
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	99.91
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	99.91
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	99.91
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	99.91
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	99.9
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	99.9
1f4p_A	147	Flavodoxin; electron transport, flavoprotein, FMN,	99.9
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	99.89
2wc1_A	182	Flavodoxin; electron transport, flavoprotein; HET:	99.86
2bmv_A	164	Flavodoxin; electron transport, flavoprotein, FMN,	99.85
1yob_A	179	Flavodoxin 2, flavodoxin II; alpha-beta fold, non-	99.85
2fcr_A	173	Flavodoxin; electron transport; HET: FMN; 1.80A {C	99.84
5nul_A	138	Flavodoxin; electron transport, flavoprotein, FMN;	99.84
1obo_A	169	Flavodoxin; electron transfer, flavoprotein, elect	99.83
1czn_A	169	Flavodoxin; FMN binding, redox potential, electron	99.82
1ag9_A	175	Flavodoxin; electron transport, reductive activati	99.82
3hly_A	161	Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein	99.79
3fni_A	159	Putative diflavin flavoprotein A 3; alpha-beta pro	99.78
2gpj_A	252	Siderophore-interacting protein; structural genomi	99.75
2fz5_A	137	Flavodoxin; alpha/beta doubly-wound topology, non-	99.74
2xod_A	119	NRDI protein, NRDI; flavoprotein, redox protein, r	99.74
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	99.69
1rlj_A	139	NRDI protein; flavoprotein, FMN, thioredoxin, alph	99.66
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	99.64
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	99.62
2a5l_A	200	Trp repressor binding protein WRBA; APC5760, PA094	99.55
4dik_A	410	Flavoprotein; TM0755, electron transport, DI-iron	99.55
2ark_A	188	Flavodoxin; FMN, structural genomics, PSI, structu	99.54
3n3a_C	153	Protein NRDI; ribonucleotide reductase, four-helix	99.54
1e5d_A	402	Rubredoxin\:oxygen oxidoreductase; oxygenreductase	99.52
1ycg_A	398	Nitric oxide reductase; DIIRON site, oxidoreductas	99.5
3b6i_A	198	Flavoprotein WRBA; flavoproteins, NADH:quinone oxi	99.48
2ohh_A	404	Type A flavoprotein FPRA; beta-lactamase like doma	99.47
2q9u_A	414	A-type flavoprotein; flavodoxin like, beta lactama	99.46
3d7n_A	193	Flavodoxin, WRBA-like protein; structural genomics	99.43
2zki_A	199	199AA long hypothetical Trp repressor binding prot	99.43
1ydg_A	211	Trp repressor binding protein WRBA; tetramer, stru	99.42
4ici_A	171	Putative flavoprotein; PF12682 family protein, fla	99.36
2vzf_A	197	NADH-dependent FMN reductase; oxidoreductase; 2.50	99.31
3klb_A	162	Putative flavoprotein; structural genomi center fo	99.31
3edo_A	151	Flavoprotein, putative Trp repressor binding prote	99.18
1t5b_A	201	Acyl carrier protein phosphodiesterase; structural	99.07
3gfs_A	174	FMN-dependent NADPH-azoreductase; flavoproteins, q	99.03
1sqs_A	242	Conserved hypothetical protein; structural genomic	99.01
1rtt_A	193	Conserved hypothetical protein; protein structure	99.0
2q62_A	247	ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobi	98.94
1t0i_A	191	YLR011WP; FMN binding protein, flavodoxin, azoredu	98.92
2fzv_A	279	Putative arsenical resistance protein; flavin bind	98.78
2hpv_A	208	FMN-dependent NADH-azoreductase; structural genomi	98.77
3fvw_A	192	Putative NAD(P)H-dependent FMN reductase; Q8DWD8_s	98.74
3s2y_A	199	Chromate reductase; uranium reductase, oxidoreduct	98.17
4hs4_A	199	Chromate reductase; triple-layered, A/B/A structur	98.7
1rli_A	184	Trp repressor binding protein; structural genomics	98.65
3rpe_A	218	MDAB, modulator of drug activity B; structural gen	98.56
3r6w_A	212	FMN-dependent NADH-azoreductase 1; nitrofurazone,	98.51
3k1y_A	191	Oxidoreductase; structural genomics, PSI-2, protei	98.48
3lcm_A	196	SMU.1420, putative oxidoreductase; NADPH:quinone o	98.39
1d4a_A	273	DT-diaphorase, quinone reductase; flavoprotein, ro	98.38
3f2v_A	192	General stress protein 14; alpha-beta protein., st	98.35
3svl_A	193	Protein YIEF; E. coli CHRR enzyme, chromate biorem	98.34
2amj_A	204	Modulator of drug activity B; oxidoreductase, mena	98.32
3p0r_A	211	Azoreductase; structural genomics, center for stru	98.23
3u7r_A	190	NADPH-dependent FMN reductase; alpha/beta twisted	98.23
3tem_A	228	Ribosyldihydronicotinamide dehydrogenase [quinone;	98.16
3u7i_A	223	FMN-dependent NADH-azoreductase 1; structural geno	98.15
4gi5_A	280	Quinone reductase; protein structure initiative, F	97.61
3ha2_A	177	NADPH-quinone reductase; structural genomics, PSI-	97.61
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.49
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	87.33
1tvm_A	113	PTS system, galactitol-specific IIB component; pho	81.44

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=100.00  E-value=4.8e-109  Score=936.44  Aligned_cols=585  Identities=32%  Similarity=0.590  Sum_probs=502.9

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCC-----CCCeEEEEEecCCCCCCChhHHHHHHHH
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLP-----EEDTVIFVVSTTGQGDTPDSMKVFWRFL   80 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~-----~~~~vi~~~sT~g~G~~p~~~~~F~~~L   80 (628)
                      +++|+|+|||+|||||++|++|++.+.+.|+.+++.++++++..++.     +++.+||++||||+|++|+|+..|+++|
T Consensus        18 ~~~i~I~YgS~tGnte~~A~~la~~l~~~g~~~~v~~~~~~~~~~l~~~~~~~~~~vi~~~sT~G~G~~pd~~~~F~~~L   97 (618)
T 3qe2_A           18 GRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWL   97 (618)
T ss_dssp             TCSEEEEEECSSSHHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCEEEEEEECBGGGBCCGGGHHHHHHH
T ss_pred             CCeEEEEEECChhHHHHHHHHHHHHHHhCCCceEEechHHcCHHHhhhcccccCcEEEEEcCccCCCCCCHHHHHHHHHH
Confidence            56799999999999999999999999999999999999998877764     4789999999999999999999999999


Q ss_pred             HhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhC
Q 006868           81 LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQID  160 (628)
Q Consensus        81 ~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~  160 (628)
                      ....   ..|+|++|||||+||++|+|||.+++.++++|+++||+++.+++++|++.  +.+++|+.|.+.+|++|.+.+
T Consensus        98 ~~~~---~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~--~~~~~~~~W~~~l~~~l~~~~  172 (618)
T 3qe2_A           98 QETD---VDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDG--NLEEDFITWREQFWLAVCEHF  172 (618)
T ss_dssp             HHCC---CCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcc---ccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccccccCC--CcHHHHHHHHHHHHHHHHHHh
Confidence            8743   23899999999999999999999999999999999999999999999974  489999999999999999887


Q ss_pred             CCCCCCCCCcccccccccCCCceEEEEecccccccccccccchhhhhhhhhhhhccccccccCcCCCcccee-eeeeeee
Q 006868          161 PSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQP  239 (628)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~  239 (628)
                      +  +....     .+.  ..+.+.+..............  ...       .........  ..+...++|. +|++|++
T Consensus       173 ~--~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~--~~~~~~~~~~a~v~~n~~  232 (618)
T 3qe2_A          173 G--VEATG-----EES--SIRQYELVVHTDIDAAKVYMG--EMG-------RLKSYENQK--PPFDAKNPFLAAVTTNRK  232 (618)
T ss_dssp             T--CCCC--------C--CCCSEEEEECTTCCGGGSBCS--CCS-------STTTTTSCC--SCCSSSSCEEEEEEEEEE
T ss_pred             C--CCccc-----ccc--cccceeEEecccccccccccc--ccc-------ccccccccC--CCcccCCcEEEEEEeEEE
Confidence            6  22110     111  235666655322110000000  000       000000000  0112233555 9999999


Q ss_pred             cCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCCcccccc
Q 006868          240 LTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIK  319 (628)
Q Consensus       240 lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~~~~~~t  319 (628)
                      ||+ ++.++|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||+++++.|++.........    ..+++.|+|
T Consensus       233 Lt~-~~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~~----~~~~p~~~t  307 (618)
T 3qe2_A          233 LNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNK----KHPFPCPTS  307 (618)
T ss_dssp             CSC-CSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTTCSC----CSSSSSSEE
T ss_pred             cCC-CCCCcEEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCccccC----CCCCCCceE
Confidence            997 568999999999998889999999999999999999999999999999999999765432111    123668999


Q ss_pred             HHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhc--CccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHH
Q 006868          320 LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFA--SPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLV  397 (628)
Q Consensus       320 l~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~  397 (628)
                      ++++|++|+||++ +|++.||+.||.||+|+.+|++|++|+  +++|+++|.+|+.+++++++|+|++||++++|+++|+
T Consensus       308 l~~~l~~~~di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~~~p~~~l~  386 (618)
T 3qe2_A          308 YRTALTYYLDITN-PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLC  386 (618)
T ss_dssp             HHHHHHHTBCCSS-CCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHH
T ss_pred             HHHhhhhEeecCC-CCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHH
Confidence            9999999999999 999999999999999999999999999  6788999999999999999999999999999999999


Q ss_pred             HhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCc-----eEEEEeecCCCCCC-CC
Q 006868          398 QLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGI-----YIPAWFQKGSLPRP-PP  471 (628)
Q Consensus       398 ~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~-----~v~i~~~~g~F~lp-~~  471 (628)
                      +++|+++||+|||||+|..+++.++|+|++|+|.+..++.+.|+||+||+++.+. |+     +|.+++|.|.|++| ++
T Consensus       387 ~~lp~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~-Gd~~~~~~v~v~~p~g~F~lp~~~  465 (618)
T 3qe2_A          387 ELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPV-GENGGRALVPMFVRKSQFRLPFKA  465 (618)
T ss_dssp             HHSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC------CCEEEEEEECCSCCCCSST
T ss_pred             HhccccccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhccc-CCCCcceEEEEEEecCcccCCCCC
Confidence            9999999999999999977789999999999999988888999999999977541 66     99999999999999 77


Q ss_pred             CCCEEEEeCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecC
Q 006868          472 SVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK  549 (628)
Q Consensus       472 ~~piimIa~GtGIAPfrs~l~~~~~~~~~~-~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~  549 (628)
                      .+|+||||+||||||||+|++++......+ ..++++||||||+++ |++|++||++|.+. |.++     +++++|||+
T Consensus       466 ~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~-g~l~-----~l~~a~Srd  539 (618)
T 3qe2_A          466 TTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRD-GALT-----QLNVAFSRE  539 (618)
T ss_dssp             TSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHH-TSSS-----EEEEEETTS
T ss_pred             CCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhc-CCCc-----EEEEEEcCC
Confidence            899999999999999999999997643221 247899999999996 99999999999998 8876     899999999


Q ss_pred             CCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeecC
Q 006868          550 QPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS  628 (628)
Q Consensus       550 ~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvws  628 (628)
                      +..++||||+|.++.+.+++++.++++||||||++.|+++|.++|.+|++++++++.++|++|+++|+++|||++||||
T Consensus       540 ~~~k~yVqd~l~~~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~RY~~Dv~s  618 (618)
T 3qe2_A          540 QSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS  618 (618)
T ss_dssp             SSSCCCHHHHHHHTHHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred             CCCCCcHHHHHHHhHHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEeecC
Confidence            9889999999999999999999779999999997699999999999999999999999999999999999999999998

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=100.00  E-value=3e-105  Score=914.74  Aligned_cols=590  Identities=27%  Similarity=0.436  Sum_probs=495.0

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHH-hCCCCcEEeeCCCCCccCCCCC-CeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESE-RRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQGDTPDSMKVFWRFLLQ   82 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~-~~g~~v~~~~l~~~~~~~l~~~-~~vi~~~sT~g~G~~p~~~~~F~~~L~~   82 (628)
                      .|++++|+|+|+|||||++|++|++.+. +.|+.+.+.++++++..++.++ +.+||++||||+|++|+++..|+++|..
T Consensus        48 ~~~ki~IlY~S~tGnte~~A~~ia~~l~~~~g~~v~v~~l~~~~~~~l~~~~~~vi~~~sT~G~G~~p~~~~~F~~~l~~  127 (682)
T 2bpo_A           48 NNKNYLVLYASQTGTAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGDFPDGAVNFEDFICN  127 (682)
T ss_dssp             TTCSEEEEEECSSSHHHHHHHHHHHHHHHHHCCCEEEEETTSSCGGGGGGCCSEEEEEEECBTTTBCCSSCHHHHHHHHT
T ss_pred             CCCeEEEEEECCchHHHHHHHHHHHHhHHhcCCceEEeehHHCCHHHHhhcCCeEEEEeCccCCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999999998 8899999999999999889899 9999999999999999999999999976


Q ss_pred             ccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCC
Q 006868           83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPS  162 (628)
Q Consensus        83 ~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~  162 (628)
                      ...  ..|+|++|||||+||++|++||.+++.++++|+++||+++.+.+++|+++ ++.+++|++|.++||++|.+.++ 
T Consensus       128 ~~~--~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~-~~~~~~~~~W~~~l~~~l~~~~~-  203 (682)
T 2bpo_A          128 AEA--GALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGA-GTTDEDYMAWKDSILEVLKDELH-  203 (682)
T ss_dssp             CCT--TSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEETTT-TCHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             ccc--hhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEEecCC-cccHHHHHHHHHHHHHHHHhhcC-
Confidence            542  23899999999999999999999999999999999999999999999987 56899999999999999998876 


Q ss_pred             CCCCCCCcccccccccCCCceEEEEeccc-cccccccccc-chhhhhhhhhhhhccccccccCcCCCcccee-eeeeeee
Q 006868          163 FFPQGPDHVIEEMKLIDQPKVHITYHSID-NAASRLSNAS-DLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQP  239 (628)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~  239 (628)
                       ...+..       . ..|.+.+...+.. ......+... .+....  ... .......  ..+....+|. +|+.|++
T Consensus       204 -~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~--~~~~~~~p~~a~v~~~~~  269 (682)
T 2bpo_A          204 -LDEQEA-------K-FTSQFQYTVLNEITDSMSLGEPSAHYLPSHQ--LNR-NADGIQL--GPFDLSQPYIAPIVKSRE  269 (682)
T ss_dssp             -CCCCCC-------C-CCCSBCCEECSSCCTTSCSSCSSGGGSTTSC--CCC-CTTCCBC--SCCBTTBCCCEEEEEEEE
T ss_pred             -Cccccc-------c-cCCcceeEecccCCccccccCcccccccccc--ccc-ccccccc--CcccCCCceEEEEEEEEE
Confidence             322110       0 2344544332110 0000000000 000000  000 0000000  0111223455 9999999


Q ss_pred             cCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCCcccccc
Q 006868          240 LTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIK  319 (628)
Q Consensus       240 lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~~~~~~t  319 (628)
                      ||+ ++.++|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||+++++.|++++.......      +++.|+|
T Consensus       270 L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~~------p~p~~~t  342 (682)
T 2bpo_A          270 LFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDPTVKV------PFPTPTT  342 (682)
T ss_dssp             CCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSSTTCCC------SSCSSEE
T ss_pred             ccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEEecCCcccCC------CCCCCcc
Confidence            999 889999999999987899999999999999999999999999999999999998754432222      2669999


Q ss_pred             HHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCC----CCCCCHHH
Q 006868          320 LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP----SVQMPIDW  395 (628)
Q Consensus       320 l~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~----~~~~p~~~  395 (628)
                      |+++|++|+||++ +|++.||+.||.||+|+.+|++|++|+  +++++|.+|+...++|++|+|.+||    ++++|+++
T Consensus       343 l~~~l~~~ldi~~-~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~~~~s~~~p~~~  419 (682)
T 2bpo_A          343 IGAAIKHYLEITG-PVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSDGAKWDTVPMQF  419 (682)
T ss_dssp             HHHHHHHTBCCSS-CCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHTTCCCTTSCHHH
T ss_pred             HHHHHHHhhhccC-CCCHHHHHHHHHHCCCHHHHHHHHHhc--cCHHHHHHHHhcCCCCHHHHHHhccCcccccCCCHHH
Confidence            9999999999999 999999999999999999999999999  6999999999999999999999999    89999999


Q ss_pred             HHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCC---CCcccccccHHhhCcCCC----------CCc-------
Q 006868          396 LVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY---KRKRTGLCSVWLAGLDPQ----------QGI-------  455 (628)
Q Consensus       396 l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~---~~~~~G~~S~~L~~l~~~----------~G~-------  455 (628)
                      ++..+|+++||+|||||+|..+++.++|+|++++|.++.   ++.+.|+||+||+++++.          .|+       
T Consensus       420 l~~~lp~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~i~GP  499 (682)
T 2bpo_A          420 LVESVPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGP  499 (682)
T ss_dssp             HHHHSCBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCCCSSCG
T ss_pred             HHHhCcccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhcccccccccccccccccceeeccC
Confidence            999999999999999999966689999999999999876   577899999999877550          033       


Q ss_pred             -------eEEEEeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcC------CC-CCCCeEEEEcCCCCCcccc
Q 006868          456 -------YIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS------SG-PAAPIIFFFGCRNEDDFLY  520 (628)
Q Consensus       456 -------~v~i~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~------~~-~~~~~~L~~G~R~~~d~ly  520 (628)
                             .|.++++.+.|++| ++.+|+||||+||||||||+|+|++.....      .+ ..++++||||||+++|++|
T Consensus       500 ~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~D~ly  579 (682)
T 2bpo_A          500 RKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLY  579 (682)
T ss_dssp             GGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSSSSCTT
T ss_pred             cCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCChhhhhh
Confidence                   55666666667898 778999999999999999999999987542      11 2489999999999999999


Q ss_pred             HHHHHHhHhcCCCcccCCCCcEEEEEec-CCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 006868          521 RELWLSHSLNDGVFSEAKGGGFYVAFSR-KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVS  599 (628)
Q Consensus       521 ~~el~~~~~~~g~l~~~~~~~~~~a~Sr-~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~  599 (628)
                      ++||++|..+.|...     +++++||| ++..++||||+|.++.+.+++++.++++||||||+..|+++|.++|.+|++
T Consensus       580 ~dEl~~~~~~~g~~~-----~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~~V~~~L~~i~~  654 (682)
T 2bpo_A          580 QDEWPEYAKKLDGSF-----EMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILS  654 (682)
T ss_dssp             TTTHHHHHHHHGGGE-----EEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCce-----EEEEEECCCCCCCCcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHHHHHHHHHHHHH
Confidence            999999954325443     89999999 566799999999999999999997799999999954999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868          600 KEGEASRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       600 ~~~~~~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                      ++++++.++|++|+++|+++|||++|||
T Consensus       655 ~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw  682 (682)
T 2bpo_A          655 RGKSITTDEATELIKMLKTSGRYQEDVW  682 (682)
T ss_dssp             HHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence            9999999999999999999999999999

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=100.00  E-value=1.6e-100  Score=875.72  Aligned_cols=581  Identities=29%  Similarity=0.510  Sum_probs=489.0

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS   84 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~   84 (628)
                      .+++++|+|||+|||||.+|++|++.+. .|+.+++++|++++..+|..++++||++||||+|++|+|+..|+++|....
T Consensus        10 ~~~k~~IlY~S~TG~te~~A~~l~~~l~-~~~~~~v~~m~~~d~~~l~~~~~vl~vtsT~G~Gdpp~n~~~F~~~L~~~~   88 (688)
T 1tll_A           10 KRVKATILYATETGKSQAYAKTLCEIFK-HAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMR   88 (688)
T ss_dssp             CSCEEEEEEECSSSHHHHHHHHHHHHHT-TTSEEEEEETTTSCTTSGGGCSEEEEEECCBTTTBCCGGGHHHHHHHHHHT
T ss_pred             CCCeEEEEEECCchHHHHHHHHHHHHHh-cCCCcEEeecccCChhHhccCceEEEEEcccCCCcCCHHHHHHHHHHHhcc
Confidence            4578999999999999999999999985 789999999999999999999999999999999999999999999998652


Q ss_pred             ----------------------------Cc-----------ccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCe
Q 006868           85 ----------------------------LS-----------KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT  125 (628)
Q Consensus        85 ----------------------------~~-----------~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~  125 (628)
                                                  ++           ...|+|++||||||||++|++||.+++.++++|+++||+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~ld~~L~~lGa~  168 (688)
T 1tll_A           89 HPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGE  168 (688)
T ss_dssp             C-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCE
T ss_pred             CCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchHHHHHHHHHHHHHHHHcCCc
Confidence                                        11           234899999999999999999999999999999999999


Q ss_pred             EeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCCCCCCCCCc-c----c--ccccccCCCceEEEEecccccccccc
Q 006868          126 AVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDH-V----I--EEMKLIDQPKVHITYHSIDNAASRLS  198 (628)
Q Consensus       126 ~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~-~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (628)
                      ++.+.+++|+..  |+++.|++|.+++|+++.+.++  +..+... .    +  +.... .++.+.+......       
T Consensus       169 rl~~~~~~D~~~--g~e~~f~~W~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------  236 (688)
T 1tll_A          169 RILKMREGDELC--GQEEAFRTWAKKVFKAACDVFC--VGDDVNIEKPNNSLISNDRSW-KRNKFRLTYVAEA-------  236 (688)
T ss_dssp             ESSCCEEEETTT--THHHHHHHHHHHHHHHHHHHHT--CCSSSCCC-------CCSSSC-CTTTEEEEECSCC-------
T ss_pred             eeecceeeccCC--CcHHHHHHHHHHHHHHHHHhcC--CCccccccccccccccccccc-CCcceEEeccccc-------
Confidence            999999999973  5899999999999999988765  2221100 0    0  00001 1233444321110       


Q ss_pred             cccchhhhhhhhhhhhccccccccCcCCCcccee-eeeeeeecCCCCCCCcEEEEEEEecCC-CCccCCCCEEEEecCCC
Q 006868          199 NASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSA-AIEYEVGDVLEILPSQD  276 (628)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~i~p~N~  276 (628)
                        ..+..   ..   ...         ....++. +|++|++||+++++++|+||+|+++++ +++|+|||+|+|+|.|+
T Consensus       237 --~~~~~---~~---~~~---------~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~  299 (688)
T 1tll_A          237 --PDLTQ---GL---SNV---------HKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNH  299 (688)
T ss_dssp             --CCHHH---HH---HHH---------TTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCC
T ss_pred             --ccccc---cc---ccc---------ccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCC
Confidence              00000   00   000         1122444 999999999999999999999999754 69999999999999999


Q ss_pred             HHHHHHHHHHcCC--CCCceEEEeecCccC---C-CCc-ccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCC
Q 006868          277 PAAVDTFIQRCNL--DPDALITVQHKEMKN---Y-LPD-IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATA  349 (628)
Q Consensus       277 ~~~V~~~l~~l~l--~~~~~v~~~~~~~~~---~-~p~-~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~  349 (628)
                      ++.|+++|++||+  ++++.|+++......   + .+. ....++| ++||+++|++|+||++ +|++.||+.||.||+|
T Consensus       300 ~~~V~~~l~~l~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p-~~tl~~~l~~~lDi~~-~p~~~~l~~la~~a~~  377 (688)
T 1tll_A          300 EDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLP-PCTIFQAFKYYLDITT-PPTPLQLQQFASLATN  377 (688)
T ss_dssp             HHHHHHHHTTCSSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSC-SBCHHHHHHHTBCCSS-CCCHHHHHHHHTTBCC
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEeccccccCCCcccccccccCCCC-CccHHHHHHhheeCCC-CCCHHHHHHHHHHcCC
Confidence            9999999999986  677889886431110   0 000 0012355 9999999999999999 9999999999999999


Q ss_pred             hhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEE
Q 006868          350 EHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVS  429 (628)
Q Consensus       350 ~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~  429 (628)
                      +.+|++|++|++  +.++|.+|+...+++++|+|.+||++++|+++++..+|++++|+|||||+|..+++.++|+|++++
T Consensus       378 ~~ek~~L~~l~~--~~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~lp~l~~R~YSIsSsp~~~~~~i~l~V~vv~  455 (688)
T 1tll_A          378 EKEKQRLLVLSK--GLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVS  455 (688)
T ss_dssp             HHHHHHHHHHTT--CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHHSCBCCCEEEEBCSCTTTSTTEEEEEEECCE
T ss_pred             HHHHHHHHHHhc--CHHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHhCcccceeEEeecCCcccCCCeEEEEEEEEE
Confidence            999999999996  788999999999999999999999999999999999999999999999999655899999999999


Q ss_pred             eecCCC--CcccccccHHhhCcCCCCCceEEEEeec-CCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcC--CCCC
Q 006868          430 WTTPYK--RKRTGLCSVWLAGLDPQQGIYIPAWFQK-GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPA  503 (628)
Q Consensus       430 ~~~~~~--~~~~G~~S~~L~~l~~~~G~~v~i~~~~-g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~--~~~~  503 (628)
                      |.++.+  +.+.|.||+||+++++  |+.|.+.+++ |.|.+| +..+|+||||+|||||||++|++++.....  .+..
T Consensus       456 ~~~~~g~~~~~~G~~S~~L~~l~~--Gd~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~  533 (688)
T 1tll_A          456 YHTRDGEGPVHHGVCSSWLNRIQA--DDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNP  533 (688)
T ss_dssp             EETGGGTSCEEECHHHHHHTTCCT--TSEEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCC
T ss_pred             EecCCCCCCcCCCchhHHHHhCCC--CCEEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCC
Confidence            987543  4678999999999999  9999999965 599999 778999999999999999999999987410  0123


Q ss_pred             CCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCC-ccchhhhHHHc-HHHHHHHH-hCCCEEEE
Q 006868          504 APIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-KVYVQHKMLEQ-SQRIWNLL-LSKASIYV  579 (628)
Q Consensus       504 ~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~-k~yVqd~l~~~-~~~v~~~l-~~~~~iyv  579 (628)
                      ++++||||||+++ |++|++||++|.+. +.+.     +++++|||++.. ++||||+|.++ .+.+++++ .++++|||
T Consensus       534 ~~v~L~~G~R~~~~D~ly~dEL~~~~~~-~~~~-----~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYv  607 (688)
T 1tll_A          534 CPMVLVFGCRQSKIDHIYREETLQAKNK-GVFR-----ELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYV  607 (688)
T ss_dssp             CCEEEEEEESCTTTTCTTHHHHHHHHHT-TSEE-----EEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEE
T ss_pred             CCEEEEEEeccchhhhhHHHHHHHHHHc-CCce-----EEEEEECCCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEE
Confidence            8999999999998 99999999999988 5544     899999998764 89999999998 88888887 45899999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeecC
Q 006868          580 AGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS  628 (628)
Q Consensus       580 CG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvws  628 (628)
                      |||+ .|+++|.++|.++++++++++.++|++|+++|+.++||+.|+|+
T Consensus       608 CGp~-~M~~~V~~~L~~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf~  655 (688)
T 1tll_A          608 CGDV-TMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIFG  655 (688)
T ss_dssp             EEEH-HHHHHHHHHHHHHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred             eCCH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCCEEEEecC
Confidence            9998 89999999999999999999999999999999999999999995

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*

Probab=100.00  E-value=1.4e-81  Score=684.19  Aligned_cols=388  Identities=33%  Similarity=0.628  Sum_probs=353.8

Q ss_pred             Ccccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCC
Q 006868          227 KAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNY  305 (628)
Q Consensus       227 ~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~  305 (628)
                      ..++|. +|++|++||+ ++.++|+||+|++++++++|+|||+|+|||.|+++.|+++|++||+++++.|++........
T Consensus        59 ~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~~~  137 (458)
T 3qfs_A           59 AKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESN  137 (458)
T ss_dssp             SSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTTCS
T ss_pred             CCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCCEEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCcccc
Confidence            445676 9999999998 46899999999999889999999999999999999999999999999999999976433211


Q ss_pred             CCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcC--ccCHHHHHHHHHcCCCCHhhHh
Q 006868          306 LPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFAS--PEGRDDLYKYNQKERRTVLEVL  383 (628)
Q Consensus       306 ~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~~~d~l  383 (628)
                      .+    .+++.|+|++++|++|+||++ +|++.||+.||.||+|+.+|++|++|++  ++|+++|.+|+.+++++++|+|
T Consensus       138 ~~----~p~~~~~tl~~~l~~~~di~~-~p~~~~l~~la~~a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL  212 (458)
T 3qfs_A          138 KK----HPFPCPTSYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAIL  212 (458)
T ss_dssp             CC----CSSSSSEEHHHHHHHTBCCSS-CCCHHHHHHHGGGBCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHH
T ss_pred             cC----CCCCCCeeHHHHHHhcEeccC-CCCHHHHHHHHHHcCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHH
Confidence            11    236689999999999999999 9999999999999999999999999997  4688999999999999999999


Q ss_pred             hhCCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCc------eE
Q 006868          384 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGI------YI  457 (628)
Q Consensus       384 ~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~------~v  457 (628)
                      ++||++++|+++|++.+|+++||+|||||+|..+++.++|+|++|+|.+..++.+.|+||+||+++.+  |+      .|
T Consensus       213 ~~fps~~~p~~~ll~~lp~l~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~--gg~~~~~~~v  290 (458)
T 3qfs_A          213 QDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEP--VGENGGRALV  290 (458)
T ss_dssp             HHSTTBCCCHHHHHHHSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCS--SCSSCCCCEE
T ss_pred             HhCCccCCCHHHHHhhCCCCcceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhcc--CCccCCceEE
Confidence            99999999999999999999999999999997678999999999999998888999999999998876  54      69


Q ss_pred             EEEeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCc
Q 006868          458 PAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVF  534 (628)
Q Consensus       458 ~i~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l  534 (628)
                      .+.+|.|.|.+| ++.+|+||||+||||||||+|++++......+ ..++++||||||++ +|++|++||++|.+. |.+
T Consensus       291 ~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~-g~l  369 (458)
T 3qfs_A          291 PMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRD-GAL  369 (458)
T ss_dssp             EEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHH-TSS
T ss_pred             EEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHc-CCC
Confidence            999999999999 77899999999999999999999986321111 13789999999997 599999999999998 776


Q ss_pred             ccCCCCcEEEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006868          535 SEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLK  614 (628)
Q Consensus       535 ~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~  614 (628)
                      +     ++++||||++..++||||+|.++.+.+|+++.+++.||||||++.|+++|+++|.+|++++++++.++|++|++
T Consensus       370 ~-----~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~  444 (458)
T 3qfs_A          370 T-----QLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIK  444 (458)
T ss_dssp             S-----EEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             C-----EEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            5     89999999998899999999999999999998899999999976899999999999999999999999999999


Q ss_pred             HHHHcCCEEEeecC
Q 006868          615 ALQRAGRYHVEAWS  628 (628)
Q Consensus       615 ~l~~~~Ry~~dvws  628 (628)
                      +|+++|||++||||
T Consensus       445 ~l~~~~RY~~Dvws  458 (458)
T 3qfs_A          445 KLMTKGRYSLDVWS  458 (458)
T ss_dssp             HHHHTTSEEEEEEC
T ss_pred             HHHHCCCeEEEecC
Confidence            99999999999998

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=100.00  E-value=1.8e-78  Score=673.75  Aligned_cols=388  Identities=29%  Similarity=0.529  Sum_probs=345.8

Q ss_pred             cccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCC--ceEEEeecCcc-
Q 006868          228 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPD--ALITVQHKEMK-  303 (628)
Q Consensus       228 ~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~--~~v~~~~~~~~-  303 (628)
                      ..+|. +|++|++||+++++++|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||++++  ..|++++.... 
T Consensus       112 ~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~~~~~~~~  191 (539)
T 2qtl_A          112 DPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLLKIKADTK  191 (539)
T ss_dssp             -CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEEEECTTCC
T ss_pred             CCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEEecccccc
Confidence            34566 999999999999999999999999988899999999999999999999999999999864  67887654321 


Q ss_pred             ---CCCCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHh
Q 006868          304 ---NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVL  380 (628)
Q Consensus       304 ---~~~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~  380 (628)
                         ..+|    ++++.++|++++|++|+||++ +|++.||+.||.||+|+.+|++|++|++++|.++|++|+.+.+++++
T Consensus       192 ~~~~~~p----~~~p~~~tl~~~L~~~lDi~~-~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~~ll  266 (539)
T 2qtl_A          192 KKGATLP----QHIPAGCSLQFIFTWCLEIRA-IPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDACACLL  266 (539)
T ss_dssp             CTTCCCC----TTSCTTCBHHHHHHHTBCTTS-CCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTTCCHH
T ss_pred             CCCccCC----CCCCCcccHHHHHHHHhhhcC-CCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcCCCHH
Confidence               1223    346689999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hHhhhCCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecC--CCCcccccccHHhhCc---------
Q 006868          381 EVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP--YKRKRTGLCSVWLAGL---------  449 (628)
Q Consensus       381 d~l~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~--~~~~~~G~~S~~L~~l---------  449 (628)
                      |+|.+||++++|++++++.+|++++|+|||||+|..+++.++|+|++|+|.+.  .++.+.|+||+||+++         
T Consensus       267 dvL~~fps~~~p~~~ll~~lp~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~  346 (539)
T 2qtl_A          267 DLLLAFPSCQPPLSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNI  346 (539)
T ss_dssp             HHHHHSTTBCCCHHHHHHHSCBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC----
T ss_pred             HHHHhCCCcCCCHHHHHHhCcCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccc
Confidence            99999999999999999999999999999999996578999999999999543  3455789999999987         


Q ss_pred             --CCCCCc-------eEEEEeecC-CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCC---CCCCCeEEEEcCCCC
Q 006868          450 --DPQQGI-------YIPAWFQKG-SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS---GPAAPIIFFFGCRNE  515 (628)
Q Consensus       450 --~~~~G~-------~v~i~~~~g-~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~---~~~~~~~L~~G~R~~  515 (628)
                        ++  |+       .|.+.+|.| .|.+| +..+|+||||+||||||||||+|+|......   ...+++|||||||++
T Consensus       347 ~~~~--Gd~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~  424 (539)
T 2qtl_A          347 HASH--EDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHK  424 (539)
T ss_dssp             ------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCT
T ss_pred             cCCC--CCccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCc
Confidence              88  99       999999986 89999 7789999999999999999999998653211   124899999999999


Q ss_pred             C-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC------CccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCH
Q 006868          516 D-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMP  587 (628)
Q Consensus       516 ~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~  587 (628)
                      + |++|++||++|.+. |.+.     +++++|||++.      .++||||+|.++.+.+|+++ .++++||||||++.|+
T Consensus       425 ~~D~ly~dEL~~~~~~-g~~~-----~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~  498 (539)
T 2qtl_A          425 DRDYLFRKELRHFLKH-GILT-----HLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMA  498 (539)
T ss_dssp             TTCCTTHHHHHHHHHT-TSSC-----EEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred             chhhHHHHHHHHHHHh-CCCc-----EEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHH
Confidence            4 99999999999988 6554     89999999976      79999999999999999999 4599999999966899


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeecC
Q 006868          588 SDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS  628 (628)
Q Consensus       588 ~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvws  628 (628)
                      ++|.++|.+|++++++++.++|++|+++|+++|||++||||
T Consensus       499 ~~V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw~  539 (539)
T 2qtl_A          499 KDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIWS  539 (539)
T ss_dssp             HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcCC
Confidence            99999999999999999999999999999999999999997

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=100.00  E-value=2.8e-78  Score=649.76  Aligned_cols=375  Identities=29%  Similarity=0.512  Sum_probs=338.1

Q ss_pred             eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCcc-CCCCcccC
Q 006868          233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK-NYLPDIHK  311 (628)
Q Consensus       233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~-~~~p~~~~  311 (628)
                      +|++|++||+++++++|+||+|+++ ++++|+|||+|+|+|.|+++.|+++|++|||++++.|++...... ..+|    
T Consensus        10 ~v~~n~~Lt~~~~~~~~~hie~~l~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~~p----   84 (393)
T 4dql_A           10 NVVASKELQQPGSARSTRHLEIELP-KEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLP----   84 (393)
T ss_dssp             EEEEEEECSCTTCSCCEEEEEEECC-TTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC-------------
T ss_pred             EEEeEEEcCCCCCCceEEEEEEECC-CCCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCCccccCC----
Confidence            9999999999999999999999998 689999999999999999999999999999999998887543221 1233    


Q ss_pred             CCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCC
Q 006868          312 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQM  391 (628)
Q Consensus       312 ~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~  391 (628)
                        ++.|+|++++|++ +||++ +|++.||+.||.||+|+.+|++|++|++.   ++|.+++..+++|++|+|++||++++
T Consensus        85 --~~~~~tl~~~l~~-~di~~-~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~fps~~~  157 (393)
T 4dql_A           85 --LAKTVSVEELLQY-VELQD-PVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKYPACEM  157 (393)
T ss_dssp             ----CCEEHHHHTTS-BCSSS-BCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHCTTCCC
T ss_pred             --CCCcEEHHHHHHh-ccccC-CCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhCCCCCC
Confidence              6689999999999 99999 99999999999999999999999999974   37999999999999999999999999


Q ss_pred             CHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCC-cccccccHHhhCcCCCCCceEEE--EeecCCCCC
Q 006868          392 PIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKR-KRTGLCSVWLAGLDPQQGIYIPA--WFQKGSLPR  468 (628)
Q Consensus       392 p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~-~~~G~~S~~L~~l~~~~G~~v~i--~~~~g~F~l  468 (628)
                      |++++++.+|+++||+|||||+|..+++.++|+|+++.+.+..++ .+.|+||+||+++++  |+.|.+  .+|.|.|.+
T Consensus       158 p~~~~l~~lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~--Gd~v~v~v~~P~g~F~l  235 (393)
T 4dql_A          158 KFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQE--GDTITCFISTPQSEFTL  235 (393)
T ss_dssp             CHHHHHHTSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCT--TCEEEEEEECCSSCCCC
T ss_pred             CHHHHHHhCCCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCC--cCEEEEEEEcCCCCccc
Confidence            999999999999999999999996668999999999999876554 356999999999999  999995  567799999


Q ss_pred             C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868          469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVA  545 (628)
Q Consensus       469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a  545 (628)
                      | +..+|+||||+|||||||++|+++|......+ ..++++||||||++ +|++|++||+++.+. |.+      +++++
T Consensus       236 p~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~l------~l~~a  308 (393)
T 4dql_A          236 PKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSE-GII------TLHTA  308 (393)
T ss_dssp             CSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHT-TSC------EEEEE
T ss_pred             CccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhC-CCe------EEEEE
Confidence            9 77899999999999999999999986432221 24789999999996 599999999999988 988      89999


Q ss_pred             Eec-CCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEE
Q 006868          546 FSR-KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHV  624 (628)
Q Consensus       546 ~Sr-~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~  624 (628)
                      ||| ++..++||||++.++.+.+++++.++++||||||+..|.++|+++|.+|++++++++.++|++|+++|+++|||++
T Consensus       309 ~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~  388 (393)
T 4dql_A          309 FSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAK  388 (393)
T ss_dssp             ESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCEEE
T ss_pred             EeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEE
Confidence            999 5567999999999999999999999999999999768999999999999999999999999999999999999999


Q ss_pred             eecC
Q 006868          625 EAWS  628 (628)
Q Consensus       625 dvws  628 (628)
                      ||||
T Consensus       389 dv~s  392 (393)
T 4dql_A          389 DVWA  392 (393)
T ss_dssp             EEEC
T ss_pred             Eecc
Confidence            9997

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=100.00  E-value=3.4e-74  Score=626.72  Aligned_cols=386  Identities=30%  Similarity=0.562  Sum_probs=342.0

Q ss_pred             cee-eeeeeeecCCCCCCCcEEEEEEEecCC-CCccCCCCEEEEecCCCHHHHHHHHHHcCC--CCCceEEEeecCcc--
Q 006868          230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSA-AIEYEVGDVLEILPSQDPAAVDTFIQRCNL--DPDALITVQHKEMK--  303 (628)
Q Consensus       230 ~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l--~~~~~v~~~~~~~~--  303 (628)
                      +|. +|++|++||+++++++|+||+|+++++ +++|+|||+|+|+|.|+++.|+++|++||+  ++++.|+++...+.  
T Consensus        30 ~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~~~~~~~  109 (435)
T 1f20_A           30 VSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNT  109 (435)
T ss_dssp             CEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEEEEEESS
T ss_pred             cEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEeccccccC
Confidence            455 999999999999999999999999754 699999999999999999999999999976  67889988643110  


Q ss_pred             --CCCCc-ccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHh
Q 006868          304 --NYLPD-IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVL  380 (628)
Q Consensus       304 --~~~p~-~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~  380 (628)
                        ...++ ....++| ++|++++|++|+||++ +|++.||+.||.||+|+.+|++|++|++  +.++|.+|+...+++++
T Consensus       110 ~~~~~~~~~~~~~~p-~~tl~~~l~~~~di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~i~  185 (435)
T 1f20_A          110 ALGVISNWKDESRLP-PCTIFQAFKYYLDITT-PPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNPTMV  185 (435)
T ss_dssp             STTCEEEEEECCSSC-SBCHHHHHHHTBCCSS-CCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCCCHH
T ss_pred             CCCccccccccCCCC-CccHHHHHHhceecCC-CCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhccCCCHH
Confidence              00000 0012355 9999999999999999 9999999999999999999999999997  77899999999999999


Q ss_pred             hHhhhCCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCC--CcccccccHHhhCcCCCCCceEE
Q 006868          381 EVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK--RKRTGLCSVWLAGLDPQQGIYIP  458 (628)
Q Consensus       381 d~l~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~--~~~~G~~S~~L~~l~~~~G~~v~  458 (628)
                      |+|.+||++++|+++++..+|++++|+|||||+|..+++.++|+|++++|.++.+  +.+.|.||+||+++++  |+.|.
T Consensus       186 ~vl~~fps~~~p~~~l~~~lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~--Gd~v~  263 (435)
T 1f20_A          186 EVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQA--DDVVP  263 (435)
T ss_dssp             HHHHHSTTBCBCHHHHHHHSCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCT--TCEEE
T ss_pred             HHHHhCCcCCCCHHHHHHhCCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCC--CCEEE
Confidence            9999999999999999999999999999999999655899999999999987643  4568999999999999  99999


Q ss_pred             EEeec-CCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcC--CCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCC
Q 006868          459 AWFQK-GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGV  533 (628)
Q Consensus       459 i~~~~-g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~--~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~  533 (628)
                      +.+++ |.|.+| +..+|+||||+|||||||++|++++.....  ....++++||||||+++ |++|++||++|.+. +.
T Consensus       264 v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~-~~  342 (435)
T 1f20_A          264 CFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNK-GV  342 (435)
T ss_dssp             EEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHT-TS
T ss_pred             EEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHc-CC
Confidence            99965 599999 778999999999999999999999977420  01138999999999998 99999999999988 65


Q ss_pred             cccCCCCcEEEEEecCCCC-ccchhhhHHHc-HHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHH
Q 006868          534 FSEAKGGGFYVAFSRKQPQ-KVYVQHKMLEQ-SQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA  610 (628)
Q Consensus       534 l~~~~~~~~~~a~Sr~~~~-k~yVqd~l~~~-~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~  610 (628)
                      +.     +++++|||++.. ++||||+|.++ .+.+++++. +++.||||||+ .|+++|.++|.+++.++++++.++|+
T Consensus       343 ~~-----~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp~-~M~~~V~~~L~~i~~~~~~~~~~~a~  416 (435)
T 1f20_A          343 FR-----ELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV-TMAADVLKAIQRIMTQQGKLSEEDAG  416 (435)
T ss_dssp             EE-----EEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEECH-HHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             cc-----EEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCCh-hHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            54     899999998764 89999999988 888888884 58999999998 89999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEeecC
Q 006868          611 NWLKALQRAGRYHVEAWS  628 (628)
Q Consensus       611 ~~l~~l~~~~Ry~~dvws  628 (628)
                      +|+++|+++|||++|||+
T Consensus       417 ~~~~~l~~~~RY~~Dv~~  434 (435)
T 1f20_A          417 VFISRLRDDNRYHEDIFG  434 (435)
T ss_dssp             HHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHCCCEEEEecC
Confidence            999999999999999997

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*

Probab=100.00  E-value=1.7e-72  Score=601.82  Aligned_cols=361  Identities=30%  Similarity=0.519  Sum_probs=331.2

Q ss_pred             cccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCC
Q 006868          228 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYL  306 (628)
Q Consensus       228 ~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~  306 (628)
                      .++|. +|++|++||+++++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.|++.        
T Consensus         9 ~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~--------   80 (374)
T 1ddg_A            9 DAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE--------   80 (374)
T ss_dssp             TBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET--------
T ss_pred             CCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC--------
Confidence            44566 999999999999999999999999878899999999999999999999999999999999999873        


Q ss_pred             CcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhC
Q 006868          307 PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDF  386 (628)
Q Consensus       307 p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f  386 (628)
                      +        .++|++++|++|+||+  .|++.||+.||.||+|+.    |++|++  +++.|.+|+.  +++++|+|.+|
T Consensus        81 ~--------~~~tl~~~l~~~~di~--~p~~~~l~~la~~~~~~~----L~~l~~--~~~~~~~~~~--~~~~~~vl~~~  142 (374)
T 1ddg_A           81 G--------KTLPLNEALQWHFELT--VNTANIVENYATLTRSET----LLPLVG--DKAKLQHYAA--TTPIVDMVRFS  142 (374)
T ss_dssp             T--------EEEEHHHHHHHHBCCS--CCCHHHHHHHHHHHTCTT----TGGGTT--CTHHHHHHHH--HSCHHHHHHHS
T ss_pred             C--------CCccHHHHHHhcccCC--CCCHHHHHHHHHHCCCHH----HHHHhc--ChHHHHHHHc--CCCHHHHHHHC
Confidence            1        6899999999999999  689999999999999974    888884  7788999986  68999999999


Q ss_pred             CCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeec-C
Q 006868          387 PSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK-G  464 (628)
Q Consensus       387 ~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~-g  464 (628)
                      |+ +++.++++..++++++|+|||||+|..+++.++|+|++++|.+. ++.+.|.||+||++ +++  |++|.+.+++ |
T Consensus       143 p~-~~~~Gq~v~l~~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~g  218 (374)
T 1ddg_A          143 PA-QLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEE--EGEVRVFIEHND  218 (374)
T ss_dssp             CC-CCCHHHHHHHSCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCS--SCEEEEEEECCT
T ss_pred             CC-CCCHHHHHhhccCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCC--CCEEEEEEeeCC
Confidence            99 88888888888889999999999995558999999999999886 66688999999987 999  9999999966 5


Q ss_pred             CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCcccCCCCcE
Q 006868          465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGF  542 (628)
Q Consensus       465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~  542 (628)
                      .|.+| +..+|+||||+||||||||+|++++...+..   ++++||||||++ +|++|++||+++.+. +.+.     ++
T Consensus       219 ~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~~---~~~~L~~G~R~~~~d~ly~~El~~~~~~-~~~~-----~l  289 (374)
T 1ddg_A          219 NFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP---GKNWLFFGNPHFTEDFLYQVEWQRYVKE-GVLT-----RI  289 (374)
T ss_dssp             TSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTCC---SCEEEEEEESCHHHHCTTHHHHHHHHHT-TSCC-----EE
T ss_pred             CccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCCC---CCEEEEEEeCCchhhhhHHHHHHHHHHh-CCCc-----EE
Confidence            89999 7789999999999999999999999887644   899999999998 599999999999988 6554     89


Q ss_pred             EEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCE
Q 006868          543 YVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY  622 (628)
Q Consensus       543 ~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry  622 (628)
                      +++|||++..++|||++|.++.+.+++++.+++.|||||++..|+++|.++|.++++++++++.++|++|+++|+++|||
T Consensus       290 ~~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry  369 (374)
T 1ddg_A          290 DLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRY  369 (374)
T ss_dssp             EEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCE
T ss_pred             EEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCe
Confidence            99999998889999999999999999999889999999944499999999999999999999999999999999999999


Q ss_pred             EEeec
Q 006868          623 HVEAW  627 (628)
Q Consensus       623 ~~dvw  627 (628)
                      ++|||
T Consensus       370 ~~dv~  374 (374)
T 1ddg_A          370 QRDVY  374 (374)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99999

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...

Probab=100.00  E-value=2.8e-37  Score=321.62  Aligned_cols=265  Identities=26%  Similarity=0.478  Sum_probs=219.7

Q ss_pred             cee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCc
Q 006868          230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPD  308 (628)
Q Consensus       230 ~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~  308 (628)
                      ++. +|+++++|++.++.+++++++|++++..+.|+||+++.|.++|..                               
T Consensus        21 ~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~-------------------------------   69 (304)
T 2bmw_A           21 PFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD-------------------------------   69 (304)
T ss_dssp             CEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC-------------------------------
T ss_pred             CEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc-------------------------------
Confidence            344 999999999988999999999999855689999999999887421                               


Q ss_pred             ccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCC
Q 006868          309 IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPS  388 (628)
Q Consensus       309 ~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~  388 (628)
                                           ..+                                                        
T Consensus        70 ---------------------~~g--------------------------------------------------------   72 (304)
T 2bmw_A           70 ---------------------KNG--------------------------------------------------------   72 (304)
T ss_dssp             ---------------------TTS--------------------------------------------------------
T ss_pred             ---------------------ccC--------------------------------------------------------
Confidence                                 000                                                        


Q ss_pred             CCCCHHHHHHhcCCCcccceeeccCCCC---CCCeEEEEEEEEEeecCC-CCcccccccHHhhCcCCCCCceEEEEeecC
Q 006868          389 VQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPY-KRKRTGLCSVWLAGLDPQQGIYIPAWFQKG  464 (628)
Q Consensus       389 ~~~p~~~l~~~lp~~~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~-~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g  464 (628)
                                  .+..+|+|||+|+|..   +++.++|+|+.+.|.++. +..+.|.+|+||+++++  |+.|.+.+|.|
T Consensus        73 ------------~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G  138 (304)
T 2bmw_A           73 ------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEP--GSEVKITGPVG  138 (304)
T ss_dssp             ------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCT--TCEEEEEEEEC
T ss_pred             ------------CCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCC--CCEEEEEeccC
Confidence                        0136899999999842   368999999988776542 33457999999999999  99999999999


Q ss_pred             CC-CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcC----CC--CCCCeEEEEcCCCCCccccHHHHHHhHhcCC-Ccc
Q 006868          465 SL-PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS----SG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFS  535 (628)
Q Consensus       465 ~F-~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~----~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~  535 (628)
                      .| .+| +...|+||||+|||||||++|++++.....    ..  ..++++||||||+.+|++|.+||+++.+.++ ++ 
T Consensus       139 ~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~-  217 (304)
T 2bmw_A          139 KEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNF-  217 (304)
T ss_dssp             SSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTE-
T ss_pred             CceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcE-
Confidence            76 466 567899999999999999999998765420    00  1268999999999889999999999988754 56 


Q ss_pred             cCCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHH
Q 006868          536 EAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA  610 (628)
Q Consensus       536 ~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~  610 (628)
                           ++++++||+++    .+.|||+.+.++.+.+++++.. ++.||+|||+ .|+++|+++|.+++.+.| +.   ++
T Consensus       218 -----~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~~~~~~g-~~---~~  287 (304)
T 2bmw_A          218 -----RLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPP-PMEEGIDAALSAAAAKEG-VT---WS  287 (304)
T ss_dssp             -----EEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECT-THHHHHHHHHHHHHHTTT-CC---HH
T ss_pred             -----EEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhhcCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-cc---HH
Confidence                 89999999753    4789999999988888887755 7899999998 999999999999998654 44   57


Q ss_pred             HHHHHHHHcCCEEEeec
Q 006868          611 NWLKALQRAGRYHVEAW  627 (628)
Q Consensus       611 ~~l~~l~~~~Ry~~dvw  627 (628)
                      .++++|+++|||++|+|
T Consensus       288 ~~~~~m~~~~ry~~e~~  304 (304)
T 2bmw_A          288 DYQKDLKKAGRWHVETY  304 (304)
T ss_dssp             HHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHcCCeEEecC
Confidence            89999999999999999

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=100.00  E-value=4.8e-37  Score=320.85  Aligned_cols=211  Identities=27%  Similarity=0.466  Sum_probs=185.0

Q ss_pred             cccceeeccCCCC---CCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCC-CC-CCCCCEEEE
Q 006868          404 KTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP-RP-PPSVPLILI  478 (628)
Q Consensus       404 ~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~-lp-~~~~piimI  478 (628)
                      .+|+|||+|+|..   +++.++|+|+++.|.+..++.+.|.||+||+++++  |+.|.+.+|.|.|. +| +...|+|||
T Consensus        87 ~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~~~~~~~~~~~~vlI  164 (310)
T 3vo2_A           87 KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKP--GADVKITGPVGKEMLMPKDPNATVIML  164 (310)
T ss_dssp             CCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCT--TCEEEEEEEECSTTCCBSCTTCEEEEE
T ss_pred             cceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCC--CCEEEEEeccCCcccCCCCCCCCEEEE
Confidence            6899999999843   46899999999988887777778999999999999  99999999999765 56 567899999


Q ss_pred             eCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCcEEEEEecCCC----
Q 006868          479 GPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFSRKQP----  551 (628)
Q Consensus       479 a~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~~a~Sr~~~----  551 (628)
                      |+|||||||++|++++.......  ..++++||||||+.+|++|.+||+++.+.++ ++      ++++++||++.    
T Consensus       165 agGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~------~v~~~~sr~~~~~~g  238 (310)
T 3vo2_A          165 ATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNF------RLDFAVSREQTNAAG  238 (310)
T ss_dssp             EEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTE------EEEEEETTTCBCTTC
T ss_pred             eCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCE------EEEEEECCCCCCCCC
Confidence            99999999999999987654211  1368999999999999999999999998754 67      89999999864    


Q ss_pred             CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868          552 QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       552 ~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                      .++|||+.+.+..+.+++++. +++.||+|||+ .|.++|+++|.+++.+.+ +   +++.|+++|+++|||++|||
T Consensus       239 ~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp~-~M~~~v~~~L~~~~~~~g-~---~~~~~~~~l~~~~r~~~e~y  310 (310)
T 3vo2_A          239 EKMYIQTRMAEYREELWELLKKDNTYVYMCGLK-GMEKGIDDIMLNLAAKDG-I---DWMQYKKQLKKGEQWNVEVY  310 (310)
T ss_dssp             CBCCHHHHHHTTHHHHHHHHTSTTEEEEEEEST-THHHHHHHHHHHHHHHTT-C---CHHHHHHHHHHTTSEEEEEC
T ss_pred             cceehHHHHHHHHHHHHHhcccCCcEEEEeCCH-HHHHHHHHHHHHHHHHcC-c---CHHHHHHHHHHCCceEEecC
Confidence            578999999999889988886 48999999998 999999999999998775 3   47889999999999999999

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=100.00  E-value=3.3e-37  Score=322.67  Aligned_cols=263  Identities=25%  Similarity=0.459  Sum_probs=221.1

Q ss_pred             ee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcc
Q 006868          231 FL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDI  309 (628)
Q Consensus       231 ~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~  309 (628)
                      +. +|++++.+|+.++.+++++|+|+.++ .+.|+||+++.|.++|..                                
T Consensus        38 ~~~~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~--------------------------------   84 (314)
T 1fnb_A           38 YVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGED--------------------------------   84 (314)
T ss_dssp             EEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBC--------------------------------
T ss_pred             EEEEEEEEEEecCCCCCCcEEEEEEecCC-CCCcCCCCEEEEecCCCC--------------------------------
Confidence            44 99999999998888999999999884 489999999999876411                                


Q ss_pred             cCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCC
Q 006868          310 HKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSV  389 (628)
Q Consensus       310 ~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~  389 (628)
                                          ..+                                                         
T Consensus        85 --------------------~~g---------------------------------------------------------   87 (314)
T 1fnb_A           85 --------------------KNG---------------------------------------------------------   87 (314)
T ss_dssp             --------------------TTS---------------------------------------------------------
T ss_pred             --------------------cCC---------------------------------------------------------
Confidence                                000                                                         


Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCC---CCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  466 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F  466 (628)
                                 .+..+|+|||+|+|..   +++.++|+|+.+.|.+..++.+.|.+|+||+++++  |+.|.+.+|.|.|
T Consensus        88 -----------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~  154 (314)
T 1fnb_A           88 -----------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKP--GAEVKLTGPVGKE  154 (314)
T ss_dssp             -----------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCT--TCEEEEEEEECST
T ss_pred             -----------CcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCC--CCEEEEEeccCCc
Confidence                       0237899999999842   36899999998888876666678999999999999  9999999999986


Q ss_pred             C-CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCc
Q 006868          467 P-RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGG  541 (628)
Q Consensus       467 ~-lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~  541 (628)
                      . +| +...|+||||+|||||||++|++++......+  ..++++||||||+++|++|.+||+++.+.++ ++      +
T Consensus       155 ~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~------~  228 (314)
T 1fnb_A          155 MLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNF------R  228 (314)
T ss_dssp             TCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTE------E
T ss_pred             eeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcE------E
Confidence            4 56 45789999999999999999999987653210  1268999999999999999999999988744 57      8


Q ss_pred             EEEEEecCCC----CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006868          542 FYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKAL  616 (628)
Q Consensus       542 ~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l  616 (628)
                      +++++||+++    .++|||++|.+..+.+++.+. .++.||+|||+ .|+++|+++|.+++.+.+ .   ++++++++|
T Consensus       229 ~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~~~~~g-~---~~~~~~~~l  303 (314)
T 1fnb_A          229 LDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLK-GMEKGIDDIMVSLAAAEG-I---DWIEYKRQL  303 (314)
T ss_dssp             EEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEECT-THHHHHHHHHHHHHHTTT-C---CHHHHHHHH
T ss_pred             EEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECCH-HHHHHHHHHHHHHHHHhC-c---hHHHHHHHH
Confidence            9999999754    478999999988778777775 58899999998 999999999999988765 3   468999999


Q ss_pred             HHcCCEEEeec
Q 006868          617 QRAGRYHVEAW  627 (628)
Q Consensus       617 ~~~~Ry~~dvw  627 (628)
                      +++|||++|+|
T Consensus       304 ~~~~r~~~d~~  314 (314)
T 1fnb_A          304 KKAEQWNVEVY  314 (314)
T ss_dssp             HHTTCEEEEEC
T ss_pred             HHCCcEEEecC
Confidence            99999999999

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=100.00  E-value=4.2e-36  Score=324.23  Aligned_cols=265  Identities=25%  Similarity=0.427  Sum_probs=221.8

Q ss_pred             cee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCc
Q 006868          230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPD  308 (628)
Q Consensus       230 ~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~  308 (628)
                      .+. +|+++++++++++.+++++|+|+.++..+.|+||+++.|.+++..                               
T Consensus       122 ~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~-------------------------------  170 (402)
T 2b5o_A          122 PFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED-------------------------------  170 (402)
T ss_dssp             CEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE-------------------------------
T ss_pred             CEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC-------------------------------
Confidence            455 999999999988889999999998844589999999999876311                               


Q ss_pred             ccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCC
Q 006868          309 IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPS  388 (628)
Q Consensus       309 ~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~  388 (628)
                                           ..+                                                        
T Consensus       171 ---------------------~~g--------------------------------------------------------  173 (402)
T 2b5o_A          171 ---------------------KNG--------------------------------------------------------  173 (402)
T ss_dssp             ---------------------TTT--------------------------------------------------------
T ss_pred             ---------------------cCC--------------------------------------------------------
Confidence                                 000                                                        


Q ss_pred             CCCCHHHHHHhcCCCcccceeeccCCCC---CCCeEEEEEEEEEeecCC-CCcccccccHHhhCcCCCCC-ceEEEEeec
Q 006868          389 VQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPY-KRKRTGLCSVWLAGLDPQQG-IYIPAWFQK  463 (628)
Q Consensus       389 ~~~p~~~l~~~lp~~~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~-~~~~~G~~S~~L~~l~~~~G-~~v~i~~~~  463 (628)
                                  .+..+|+|||+|+|..   +++.++|+|+++.|.++. ++.+.|.||+||+++++  | +.|.+.+|.
T Consensus       174 ------------~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~--G~d~v~v~gP~  239 (402)
T 2b5o_A          174 ------------KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPV--GTDDVKITGPV  239 (402)
T ss_dssp             ------------EECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCT--TCCCEEEEEEE
T ss_pred             ------------CccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCC--CCceEEEEccc
Confidence                        0137899999999842   268999999988887632 33468999999999999  9 999999999


Q ss_pred             CCC-CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCC
Q 006868          464 GSL-PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAK  538 (628)
Q Consensus       464 g~F-~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~  538 (628)
                      |.| .+| +...|+||||+|||||||++|++++......+  ..++++||||||+.+|++|.+||+++.+.++ ++    
T Consensus       240 G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~----  315 (402)
T 2b5o_A          240 GKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNF----  315 (402)
T ss_dssp             CSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTE----
T ss_pred             CCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcE----
Confidence            986 566 56789999999999999999999987654211  1378999999999999999999999988755 67    


Q ss_pred             CCcEEEEEecCCC----CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006868          539 GGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL  613 (628)
Q Consensus       539 ~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l  613 (628)
                        ++++++||+++    .++|||++|.+..+.+++++. .++.||+|||+ .|.++|.++|.+++...+.    .++.++
T Consensus       316 --~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP~-~M~~~v~~~L~~~g~~~g~----~~~~~~  388 (402)
T 2b5o_A          316 --RLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGLK-GMQPPIDETFTAEAEKRGL----NWEEMR  388 (402)
T ss_dssp             --EEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECG-GGHHHHHHHHHHHHHHTTC----CHHHHH
T ss_pred             --EEEEEECCCCcccCCCccchHHHHHHhHHHHHHHhccCCcEEEEECCH-HHHHHHHHHHHHHHHHcCc----hHHHHH
Confidence              89999999753    478999999998888888885 48899999998 9999999999999988764    467899


Q ss_pred             HHHHHcCCEEEeec
Q 006868          614 KALQRAGRYHVEAW  627 (628)
Q Consensus       614 ~~l~~~~Ry~~dvw  627 (628)
                      ++|+++|||++|+|
T Consensus       389 ~~m~~~~Ry~~e~~  402 (402)
T 2b5o_A          389 RSMKKEHRWHVEVY  402 (402)
T ss_dssp             HHHHHTTCEEEEEC
T ss_pred             HHHHHCCCEEEecC
Confidence            99999999999999

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=100.00  E-value=9.1e-35  Score=304.06  Aligned_cols=211  Identities=20%  Similarity=0.342  Sum_probs=173.1

Q ss_pred             CcccceeeccCCCC---CCCeEEEEEEEEEeecCCCCc-ccccccHHhhCcCCCCCceEEEEeecCCCC-CCC--CCCCE
Q 006868          403 LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRK-RTGLCSVWLAGLDPQQGIYIPAWFQKGSLP-RPP--PSVPL  475 (628)
Q Consensus       403 ~~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~-~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~-lp~--~~~pi  475 (628)
                      +.+|+|||+|+|..   +++.++|+|+++.|.+..++. +.|.+|+||+++++  |+.|.+.+|.|.|. +|+  ...|+
T Consensus        91 ~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~~~~~~~~~~~~~  168 (314)
T 2rc5_A           91 YTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKP--GDEVTMTGPSGKKFLLPNTDFSGDI  168 (314)
T ss_dssp             CCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCT--TCEEEEEEEECSSSCCCSSCBCSCE
T ss_pred             CCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCC--cCEEEEEeccCCceeCCCCCCCCCE
Confidence            58899999999841   468999999887666543433 57999999999999  99999999999875 443  47899


Q ss_pred             EEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC----
Q 006868          476 ILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----  551 (628)
Q Consensus       476 imIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~----  551 (628)
                      ||||+|||||||++|++++.........++++||||||+++|++|.+||+++.+.++++      ++++++||++.    
T Consensus       169 vlIagGtGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~  242 (314)
T 2rc5_A          169 MFLATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKNF------KLITAISREEKNSFD  242 (314)
T ss_dssp             EEEEEGGGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHSSE------EEEEEETTTCBCTTT
T ss_pred             EEEECCccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCCcE------EEEEEECCCCCcccC
Confidence            99999999999999999997653211126899999999999999999999998764677      89999999743    


Q ss_pred             -CccchhhhHHHcHHHHHHHHhCCCEEEEe-CCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868          552 -QKVYVQHKMLEQSQRIWNLLLSKASIYVA-GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       552 -~k~yVqd~l~~~~~~v~~~l~~~~~iyvC-G~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                       .++|||+++.+..+.+++++.+...+||| ||+ .|+++|+++|.++..  .++   .++.|+.+|+++|||++|+|
T Consensus       243 g~~~~v~~~l~~~~~~l~~~~~~~~~~yvCGGp~-~m~~~v~~~L~~~g~--~~i---~~e~f~~~l~~~gr~~~e~~  314 (314)
T 2rc5_A          243 GGRMYISHRVREQAEAVKKILNGGGRFYICGGPK-GMEKGVIEEIQKISG--NTG---TYEEFKHHLEGAHQLFVETY  314 (314)
T ss_dssp             SSBCCHHHHHHHTHHHHHHHHHHTCEEEEEESST-TTHHHHHHHHHHHHT--CCS---CHHHHHHHHHHTTCEEEEEC
T ss_pred             CCceehhHHHHHhHHHHHHHhhcCCeEEEeCCcH-HHHHHHHHHHHHHHh--ccc---hHHHHHHHHHHCCCEEEecC
Confidence             46899999999888887777443345999 887 999999999999764  233   35789999999999999999

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=100.00  E-value=4.8e-35  Score=305.80  Aligned_cols=224  Identities=29%  Similarity=0.429  Sum_probs=187.3

Q ss_pred             CCHHHHHHhcCCC---------cccceeeccCCCC---CCCeEEEEEEEEEeecCCCC----cccccccHHhhCcCCCCC
Q 006868          391 MPIDWLVQLVPPL---------KTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKR----KRTGLCSVWLAGLDPQQG  454 (628)
Q Consensus       391 ~p~~~l~~~lp~~---------~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~----~~~G~~S~~L~~l~~~~G  454 (628)
                      .||||+...+|..         .+|+|||+|+|..   +++.++|+|+++.|.++...    .+.|.+|+||+++++  |
T Consensus        62 ~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~--G  139 (311)
T 3lo8_A           62 WEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKP--G  139 (311)
T ss_dssp             CTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCT--T
T ss_pred             cCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCC--c
Confidence            4788887777753         6899999999843   25899999987655433211    267999999999999  9


Q ss_pred             ceEEEEeecCCCCC-C--CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHhHh
Q 006868          455 IYIPAWFQKGSLPR-P--PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSL  529 (628)
Q Consensus       455 ~~v~i~~~~g~F~l-p--~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~  529 (628)
                      ++|.+.+|.|.|.+ |  +...|+||||+|||||||++|++++......+  ..++++||||||+.+|++|.+||+++.+
T Consensus       140 d~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~  219 (311)
T 3lo8_A          140 DKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLK  219 (311)
T ss_dssp             CEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHH
T ss_pred             CEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHH
Confidence            99999999998764 4  26789999999999999999999988754311  1267999999999999999999999998


Q ss_pred             cCC-CcccCCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCC
Q 006868          530 NDG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEA  604 (628)
Q Consensus       530 ~~g-~l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~  604 (628)
                      .++ ++      ++++++||++.    .++||++.+.+..+.+++++.+++.||+|||+ .|+++|+++|.+++.+.+  
T Consensus       220 ~~~~~~------~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~~~~~g--  290 (311)
T 3lo8_A          220 QYPDNF------RYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLK-GMMPGIQDTLKKVAERRG--  290 (311)
T ss_dssp             HCTTTE------EEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEECG-GGHHHHHHHHHHHHHHTT--
T ss_pred             hCCCcE------EEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECCH-HHHHHHHHHHHHHHHhcc--
Confidence            744 67      89999999864    47999999999988888888789999999998 999999999999998765  


Q ss_pred             CHHHHHHHHHHHHHcCCEEEeec
Q 006868          605 SRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       605 ~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                        +++++|+++|+++|||++|+|
T Consensus       291 --~~~~~~~~~l~~~~ry~~e~y  311 (311)
T 3lo8_A          291 --ESWDQKLAQLKKNKQWHVEVY  311 (311)
T ss_dssp             --CCHHHHHHHHHHTTCEEEEEC
T ss_pred             --HHHHHHHHHHHHCCcEEEecC
Confidence              357899999999999999999

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*

Probab=100.00  E-value=9.9e-34  Score=296.35  Aligned_cols=287  Identities=20%  Similarity=0.281  Sum_probs=207.7

Q ss_pred             CCCcccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCcc
Q 006868          225 NNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK  303 (628)
Q Consensus       225 ~~~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~  303 (628)
                      +...+++. +|+++.+|+.++...+|+||+|+.+ ..+.|.+|+.++|.|+..+..                  .+.+.+
T Consensus        10 ~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~GQ~~~i~~~~~~~~------------------~~~~~~   70 (316)
T 3jqq_A           10 YTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHN-GLFKYLEGHTCGIIPYYNELD------------------NNPNNQ   70 (316)
T ss_dssp             SCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECT-TCCCCCTTCEEEECTTCC---------------------------
T ss_pred             ecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCC-CCcceecCcEeEEECCCcccc------------------cccccc
Confidence            44555677 9999999999998999999999997 579999999999999864421                  000000


Q ss_pred             CCCCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHh
Q 006868          304 NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVL  383 (628)
Q Consensus       304 ~~~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l  383 (628)
                      +..|        .         .++-++             +.+.                   ...++           
T Consensus        71 ~~~~--------~---------~~~~~~-------------~~~~-------------------h~~~~-----------   90 (316)
T 3jqq_A           71 INKD--------H---------NIINTT-------------NHTN-------------------HNNIA-----------   90 (316)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc--------c---------cccccc-------------cccc-------------------ccccc-----------
Confidence            0000        0         000000             0000                   00000           


Q ss_pred             hhCCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecC---CCCcccccccHHhhCcCCCCCceEEEE
Q 006868          384 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP---YKRKRTGLCSVWLAGLDPQQGIYIPAW  460 (628)
Q Consensus       384 ~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~---~~~~~~G~~S~~L~~l~~~~G~~v~i~  460 (628)
                                  ....-+...+|+|||||+|  ..+.++|+|+++.|.+.   .++.+.|.||+||+++++  |++|.+.
T Consensus        91 ------------~~~~~g~~~~R~ySIaS~p--~~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~  154 (316)
T 3jqq_A           91 ------------LSHIKKQRCARLYSISSSN--NMENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKI--NDDIYLT  154 (316)
T ss_dssp             ------------------CCCCEEEEBCSCT--TSSSEEEEEECCBC---------CCBCHHHHHHHTCCT--TCEEEEE
T ss_pred             ------------cccCCCcccceeeecccCC--CCCeEEEEEEEEEecccccccCcCCCCchhHHHhhCCC--CCEEEEE
Confidence                        0001134589999999998  34789999998877643   234578999999999999  9999999


Q ss_pred             eecCCCCCC-C---CCCCEEEEeCCCChHHHHHHHHHHHHhcCC-------CCCCCeEEEEcCCCCCccccHHHHHHhHh
Q 006868          461 FQKGSLPRP-P---PSVPLILIGPGTGCAPFRGFVEERAIQSSS-------GPAAPIIFFFGCRNEDDFLYRELWLSHSL  529 (628)
Q Consensus       461 ~~~g~F~lp-~---~~~piimIa~GtGIAPfrs~l~~~~~~~~~-------~~~~~~~L~~G~R~~~d~ly~~el~~~~~  529 (628)
                      +|.|.|.++ +   ...|+||||+|||||||++|++++......       ...++++||||||+++|++|.+||+++.+
T Consensus       155 gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~  234 (316)
T 3jqq_A          155 GAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQK  234 (316)
T ss_dssp             EEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHH
T ss_pred             ecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHH
Confidence            999999998 4   378999999999999999999999865310       02378999999999999999999999988


Q ss_pred             cCC-CcccCCCCcEEEEEecCCC---CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCC
Q 006868          530 NDG-VFSEAKGGGFYVAFSRKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEA  604 (628)
Q Consensus       530 ~~g-~l~~~~~~~~~~a~Sr~~~---~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~  604 (628)
                      .++ ++      ++++++||++.   .++|||+.+.+..+.+++++. .++.||+|||+ .|.++++++|.+    .+.+
T Consensus       235 ~~~~~~------~~~~~~s~~~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~-~m~~~v~~~l~~----~G~~  303 (316)
T 3jqq_A          235 MYPNNI------NIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKK-SIRYKVMDILKS----HDQF  303 (316)
T ss_dssp             HCTTTE------EEEEEEGGGCC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECS-THHHHHHHHHHC--------
T ss_pred             hCCCcE------EEEEEECCCcccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCH-HHHHHHHHHHHH----cCCC
Confidence            754 67      89999999854   589999999999888888875 49999999998 999887766654    3433


Q ss_pred             CHHHHHHHHHHHHHcCCEEEeec
Q 006868          605 SRDSAANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       605 ~~~~a~~~l~~l~~~~Ry~~dvw  627 (628)
                      +.          ...+|++.|+|
T Consensus       304 ~~----------v~~~rih~E~f  316 (316)
T 3jqq_A          304 DE----------KKKKRVHVEVY  316 (316)
T ss_dssp             CH----------HHHTTEEEEEC
T ss_pred             cc----------cccccEEEEeC
Confidence            33          34578999886

>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}

Probab=99.98  E-value=1.6e-32  Score=268.95  Aligned_cols=151  Identities=31%  Similarity=0.473  Sum_probs=141.4

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS   84 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~   84 (628)
                      ..++++|+|||+|||||++|+.|++.+ +.|+.+++++++++++++|.+++.+||++||||+|++|+|+..|+++|....
T Consensus        39 ~~~kv~IlYgS~tGnte~~A~~La~~l-~~g~~v~v~~l~~~~~~~l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~~  117 (219)
T 3hr4_A           39 SRVRVTILFATETGKSEALAWDLGALF-SCAFNPKVVCMDKYRLSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFMLK  117 (219)
T ss_dssp             TSCEEEEEEECSSSHHHHHHHHHHHHH-TTTSEEEEEEGGGCCGGGGGTCSEEEEEEECBTTTBCCGGGHHHHHHHHHCC
T ss_pred             cCCcEEEEEECCchHHHHHHHHHHHHH-HcCCCeEEEEcccCCHhHhccCCeEEEEEeccCCCcCCHHHHHHHHHHHhcc
Confidence            467899999999999999999999998 5789999999999998899999999999999999999999999999997642


Q ss_pred             CcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCC
Q 006868           85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP  161 (628)
Q Consensus        85 ~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~  161 (628)
                         ..++|++|||||+||++|++||.+++.++++|+++||+++.|++++|++.  +.+++|+.|.+.+|++|.+.++
T Consensus       118 ---~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~~D~~~--~~e~~~~~W~~~l~~~l~~~~~  189 (219)
T 3hr4_A          118 ---ELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELS--GQEDAFRSWAVQTFKAACETFD  189 (219)
T ss_dssp             ---CCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEETTS--CHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ---hhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEEEecCC--CcHHHHHHHHHHHHHHHHHHcC
Confidence               23789999999999999999999999999999999999999999999974  4899999999999999999988

>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1

Probab=99.95  E-value=1e-27  Score=231.97  Aligned_cols=147  Identities=31%  Similarity=0.565  Sum_probs=132.4

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS   84 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~   84 (628)
                      .+++++|+|+|+||||+++|+.|++.|.+.|+.+++.+++++. .++..++.+||++||| +|++|+++..|+++|....
T Consensus        20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~~-~~l~~~d~vi~g~~Ty-~G~~p~~~~~fl~~L~~~~   97 (191)
T 1bvy_F           20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHA-GNLPREGAVLIVTASY-NGHPPDNAKQFVDWLDQAS   97 (191)
T ss_dssp             -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGST-TCCCSSSEEEEEECCB-TTBCCTTTHHHHHHHHTCC
T ss_pred             CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHHhh-hhhhhCCeEEEEEeec-CCCcCHHHHHHHHHHHhcc
Confidence            5788999999999999999999999999999999999999863 4788999999999999 9999999999999997643


Q ss_pred             CcccccCCcEEEEEecCCcChh-HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868           85 LSKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH  157 (628)
Q Consensus        85 ~~~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~  157 (628)
                      .  ..|+|++|+|||+||++|+ +||.+++.++++|+++||+++.+.+++|..  .+.+..+++|.+.||+.|.
T Consensus        98 ~--~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~~d~~--~d~e~~~~~w~~~l~~~l~  167 (191)
T 1bvy_F           98 A--DEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADAS--DDFEGTYEEWREHMWSDVA  167 (191)
T ss_dssp             S--SCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETT--SCHHHHHHHHHHHHHHHHH
T ss_pred             c--hhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEEEecC--CChHHHHHHHHHHHHHHhc
Confidence            2  2388999999999999995 999999999999999999999999999982  3366669999999999996

>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2

Probab=99.94  E-value=3.2e-27  Score=224.09  Aligned_cols=152  Identities=30%  Similarity=0.473  Sum_probs=133.9

Q ss_pred             cCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhc
Q 006868            4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK   83 (628)
Q Consensus         4 ~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~   83 (628)
                      .+|++++|+|+|+||||+++|+.|++.+.+.|+.+++.++++++..++.+++.|||++||||.|++|+++..|+++|...
T Consensus         7 ~~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~   86 (167)
T 1ykg_A            7 AEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSK   86 (167)
T ss_dssp             -----CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTST
T ss_pred             CCCCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhccCCeEEEEEcccCCCcCChhHHHHHHHHHhc
Confidence            35789999999999999999999999999989999999999988888889999999999999999999999999998653


Q ss_pred             cCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCC
Q 006868           84 SLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP  161 (628)
Q Consensus        84 ~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~  161 (628)
                      ..+  .+++++|+|||+||++|++||.+++.++++|+++|++++.+.+.+|.    +.++.+++|.+++++.|.+.++
T Consensus        87 ~~~--~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~~d~----~~~~~~~~w~~~l~~~l~~~~~  158 (167)
T 1ykg_A           87 KAP--KLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADV----EYQAAASEWRARVVDALKSRAP  158 (167)
T ss_dssp             TCC--CCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEECT----TCHHHHHHHHHHHHHHHHTCC-
T ss_pred             ccc--ccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecceecCC----CcHHHHHHHHHHHHHHHHhhcC
Confidence            212  38899999999999999999999999999999999999999888883    3788999999999999976554

>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A

Probab=99.94  E-value=1e-27  Score=222.52  Aligned_cols=146  Identities=24%  Similarity=0.309  Sum_probs=132.6

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL   85 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~   85 (628)
                      |++++|+|+|+||||+++|+.|++.+.+.|+.+.+++..  +..++.+++.+||++||||.|++|+++..|+++|.... 
T Consensus         1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~--~~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~-   77 (147)
T 2hna_A            1 MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGP--LLEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQK-   77 (147)
T ss_dssp             CCSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCT--TSCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHC-
T ss_pred             CCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCC--CHHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhhc-
Confidence            578999999999999999999999999999998888765  35578889999999999999999999999999997531 


Q ss_pred             cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868           86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                      +  .+++++|+|||+||++|++||.+++.++++|+++|++++.+.+.+|..++++.++.+++|.+++++.|
T Consensus        78 ~--~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l  146 (147)
T 2hna_A           78 P--DLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL  146 (147)
T ss_dssp             C--CTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred             c--ccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence            1  27899999999999999999999999999999999999999999998876678999999999999876

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=99.94  E-value=1.4e-26  Score=234.01  Aligned_cols=180  Identities=15%  Similarity=0.185  Sum_probs=150.8

Q ss_pred             CCHHHHHHhcCC-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCCC
Q 006868          391 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR  468 (628)
Q Consensus       391 ~p~~~l~~~lp~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~l  468 (628)
                      .|||++...+|. ..+|+|||+|+| ...+.++|+|         +....|.+|+||. ++++  |++|.+.+|.|.|.+
T Consensus        45 ~pGQ~v~l~~~~~~~~R~ySi~s~~-~~~~~l~i~v---------k~~~~G~~s~~l~~~l~~--Gd~v~v~gP~G~~~~  112 (250)
T 1tvc_A           45 EPGQFMDLTIPGTDVSRSYSPANLP-NPEGRLEFLI---------RVLPEGRFSDYLRNDARV--GQVLSVKGPLGVFGL  112 (250)
T ss_dssp             CSCCEEEECTTSCSSSEEECCBCCS-SSSCCEEEEE---------CCCTTSSSHHHHHHHSSS--SSEEEEEEEECCCSC
T ss_pred             CCCcEEEEEeCCCccccccccCCCC-CCCCeEEEEE---------EECCCCCchHHHHhcCCC--CCEEEEEcCcccccc
Confidence            689998888886 578999999998 3468899999         4445699999995 8999  999999999999998


Q ss_pred             C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868          469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  547 (628)
Q Consensus       469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S  547 (628)
                      + +...++||||+|||||||+++++++...+..   .+++|+||+|+.+|++|.+||+++.+.++++      +++.++|
T Consensus       113 ~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~s  183 (250)
T 1tvc_A          113 KERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAP---NETRIYFGVNTEPELFYIDELKSLERSMRNL------TVKACVW  183 (250)
T ss_dssp             CCCSSSCEEEEEESSTTHHHHHHHHHHHHHTCC---SCEEEEEECSSSTTCCCHHHHHHHHHHSSSC------EEEECCS
T ss_pred             CccCCceEEEEEeccCHHHHHHHHHHHHhcCCC---ceEEEEEEeCCHHHhhhHHHHHHHHHhCCCe------EEEEEec
Confidence            8 5558999999999999999999999876533   7899999999999999999999998765777      8888999


Q ss_pred             cCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          548 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       548 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      |+++    .++||++.+.+....    ...++.+|+|||+ .|.++|++.|.+
T Consensus       184 ~~~~~~~g~~g~v~~~l~~~~~~----~~~~~~vyvCGp~-~m~~~v~~~l~~  231 (250)
T 1tvc_A          184 HPSGDWEGEQGSPIDALREDLES----SDANPDIYLCGPP-GMIDAACELVRS  231 (250)
T ss_dssp             SCSSCCSSSSSSSSHHHHHHHHH----SSSSSEEEEESSH-HHHHHHHHHHHH
T ss_pred             cCCCCcCCccceehHHHHhhhhc----ccCCcEEEEeCCH-HHHHHHHHHHHH
Confidence            8533    478999887743211    1247899999998 999998887764

>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*

Probab=99.93  E-value=2e-26  Score=213.91  Aligned_cols=144  Identities=24%  Similarity=0.327  Sum_probs=132.4

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCC-CCCeEEEEEecCCC--CCCChhHHHHHHHHHh
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLP-EEDTVIFVVSTTGQ--GDTPDSMKVFWRFLLQ   82 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~-~~~~vi~~~sT~g~--G~~p~~~~~F~~~L~~   82 (628)
                      |++++|+|+|+||||+++|+.|++.+.+.|++++++++++++..++. +++.+||++||||.  |.+|++++.|+++|..
T Consensus         1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~   80 (148)
T 3f6r_A            1 MSKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDR   80 (148)
T ss_dssp             -CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGG
T ss_pred             CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhc
Confidence            57899999999999999999999999999999999999999888999 99999999999988  9999999999998864


Q ss_pred             ccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHH
Q 006868           83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRR  155 (628)
Q Consensus        83 ~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~  155 (628)
                      ..     +++++++|||+||++|++||.+++.+++.|+++|++++.+.+.++..+++ ..+.+++|.++|+++
T Consensus        81 ~~-----l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~-~~~~~~~~~~~l~~~  147 (148)
T 3f6r_A           81 IG-----LAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLKMEGDASN-DPEAVASFAEDVLKQ  147 (148)
T ss_dssp             TC-----CTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEEEESSGGG-CHHHHHHHHHHHHHT
T ss_pred             cC-----CCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceEeecCcch-HHHHHHHHHHHHHhh
Confidence            32     78999999999999999999999999999999999999998999988666 788888999888764

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=99.93  E-value=2.7e-26  Score=236.85  Aligned_cols=180  Identities=20%  Similarity=0.337  Sum_probs=141.5

Q ss_pred             CcccceeeccCCCCCCCeEEEEEEEEEe--ecC----CCCcccccccHHhhCcCCCCCceEEEEeecCCCCCCCCCCCEE
Q 006868          403 LKTRAFSISSSPLAHPNQVHLTVSVVSW--TTP----YKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLI  476 (628)
Q Consensus       403 ~~~R~YSIaSsp~~~~~~i~l~V~~v~~--~~~----~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~pii  476 (628)
                      ..+|+|||+|+| ...+.++|+|+++..  .+.    .++.+.|.+|+||+++++  |++|.+.+|.|.|.+++...|+|
T Consensus        84 ~~~R~ySi~s~~-~~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~--Gd~v~v~gP~G~f~~~~~~~~~v  160 (290)
T 2r6h_A           84 ETVRAYSMANYP-AEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKP--GDKVMMSGPYGDFHIQDTDAEML  160 (290)
T ss_dssp             CEEEEEECCSCT-TCCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCT--TCEEEEEEEECCCCCCSSSCEEE
T ss_pred             CcceeeeccCCC-CCCCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCC--CCEEEEEecccCCcCCCCCCeEE
Confidence            468999999998 456899999975321  110    012457999999999999  99999999999999886678999


Q ss_pred             EEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC-----
Q 006868          477 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP-----  551 (628)
Q Consensus       477 mIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~-----  551 (628)
                      |||+|||||||++|++++......  ..+++||||+|+.+|++|.+||+++.+.++++      ++++++||++.     
T Consensus       161 liagGtGitP~~s~l~~~~~~~~~--~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~  232 (290)
T 2r6h_A          161 YIGGGAGMAPLRAQILHLFRTLKT--GRKVSYWYGARSKNEIFYEEDFREIEREFPNF------KFHIALSDPQPEDNWT  232 (290)
T ss_dssp             EEEEGGGHHHHHHHHHHHHHTSCC--CSCEEEEEEESSGGGCCSHHHHHHHHHHCTTE------EEEEEESSCCGGGCCC
T ss_pred             EEECccCHHHHHHHHHHHHHhcCC--CCcEEEEEEcCCHHHHHHHHHHHHHHHhCCCe------EEEEEEccCCcccCCC
Confidence            999999999999999988765321  27899999999999999999999998765777      89999998642     


Q ss_pred             -CccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          552 -QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       552 -~k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                       .++||++.+.+..  +.++. ..++.+|+|||+ .|.++|++.|.+
T Consensus       233 g~~g~v~~~~~~~~--l~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~  276 (290)
T 2r6h_A          233 GYVGFIHQVIYDNY--LKDHDAPEDIEYYMCGPG-PMANAVKGMLEN  276 (290)
T ss_dssp             SCBSCHHHHHHHHT--TTTCSCGGGEEEEEECCH-HHHHHHHHHHHH
T ss_pred             CeeEecCHHHHHhH--HhhccCcCCcEEEEECCH-HHHHHHHHHHHH
Confidence             3678988764321  10001 136789999998 999999888765

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=99.93  E-value=1.7e-26  Score=230.53  Aligned_cols=178  Identities=19%  Similarity=0.230  Sum_probs=144.9

Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHH-hhCcCCCCCceEEEEeecCCCCC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW-LAGLDPQQGIYIPAWFQKGSLPR  468 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~-L~~l~~~~G~~v~i~~~~g~F~l  468 (628)
                      ..|||++...+|....|+|||+|+| ..++.++|+|++         ...|.+|++ +.++++  |++|.+.+|.|.|.+
T Consensus        30 ~~pGq~v~l~~~~~~~R~ySi~s~~-~~~~~l~l~i~~---------~~~G~~s~~~~~~l~~--Gd~v~v~gP~G~~~~   97 (232)
T 1qfj_A           30 FRAGQYLMVVMDERDKRPFSMASTP-DEKGFIELHIGA---------SEINLYAKAVMDRILK--DHQIVVDIPHGEAWL   97 (232)
T ss_dssp             CCTTCEEEEESSSSCEEEEECCSCT-TSTTCEEEEEC---------------CCHHHHHHHHH--HSEEEEEEEECSCCC
T ss_pred             cCCCCEEEEECCCCceeeeecCCCC-CCCCcEEEEEEE---------ccCCchhHHHHHhCCC--CCEEEEeCCccceEe
Confidence            3689999888888889999999998 356789999943         345666665 678999  999999999999998


Q ss_pred             C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868          469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  547 (628)
Q Consensus       469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S  547 (628)
                      + +...++||||+|||||||+++++++...+..   .+++|+||+|+.+|++|.+||+++.+.++++      +++.++|
T Consensus        98 ~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~s  168 (232)
T 1qfj_A           98 RDDEERPMILIAGGTGFSYARSILLTALARNPN---RDITIYWGGREEQHLYDLCELEALSLKHPGL------QVVPVVE  168 (232)
T ss_dssp             CSCSSSCEEEEEETTCHHHHHHHHHHHHHHCTT---CCEEEEEEESSGGGCTTHHHHHHHHHHCTTE------EEEEEES
T ss_pred             CCCCCCcEEEEEecccHhHHHHHHHHHHhcCCC---CcEEEEEeeCCHHHhhhHHHHHHHHHHCCCe------EEEEEEc
Confidence            8 5578999999999999999999999876533   7899999999999999999999998766777      8999999


Q ss_pred             cCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHH
Q 006868          548 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF  594 (628)
Q Consensus       548 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L  594 (628)
                      ++++    .++||++.+.+...   +  ..++.+|+|||+ .|.+++++.|
T Consensus       169 ~~~~~~~g~~g~v~~~~~~~~~---~--~~~~~vyvCGp~-~m~~~v~~~l  213 (232)
T 1qfj_A          169 QPEAGWRGRTGTVLTAVLQDHG---T--LAEHDIYIAGRF-EMAKIARDLF  213 (232)
T ss_dssp             SCCTTCCSEESCHHHHHHHHCS---C--CTTCEEEEESCH-HHHHHHHHHH
T ss_pred             CCCCCcCCceeeHHHHHHHhcC---C--ccccEEEEECCH-HHHHHHHHHH
Confidence            8654    36788887665310   0  137899999998 8999888777

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=99.93  E-value=3.6e-26  Score=230.45  Aligned_cols=184  Identities=16%  Similarity=0.173  Sum_probs=148.8

Q ss_pred             CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE-eecCC
Q 006868          390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGS  465 (628)
Q Consensus       390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~-~~~g~  465 (628)
                      ..|||++...+|.   ...|+|||+|+|.  .+.++|+|+.         .+.|.+|+||+++++  |++|.+. +|.|.
T Consensus        31 ~~pGq~v~l~~~~~g~~~~R~ySi~s~~~--~~~l~~~v~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gP~G~   97 (248)
T 1fdr_A           31 FTAGQFTKLGLEIDGERVQRAYSYVNSPD--NPDLEFYLVT---------VPDGKLSPRLAALKP--GDEVQVVSEAAGF   97 (248)
T ss_dssp             CCTTCEEEEEECC---CEEEEEECCSCTT--CSSEEEEEEC---------CTTCSSHHHHHTCCT--TCEEEEESSCBCC
T ss_pred             cCCCCcEEEEccCCCCeeeeeecccCCCC--CCcEEEEEEE---------eCCCchhhHHHhCCC--cCEEEEecCCcce
Confidence            3689998888873   4689999999983  4789999843         356999999999999  9999999 99999


Q ss_pred             CCCC-CC-CCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcC-CCcccCCCCcE
Q 006868          466 LPRP-PP-SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGF  542 (628)
Q Consensus       466 F~lp-~~-~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~~~~  542 (628)
                      |.++ .. ..++||||+|||||||+++++++...+.   ..+++|+||+|+.+|++|.+||+++.+.+ +++      ++
T Consensus        98 f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~---~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~------~~  168 (248)
T 1fdr_A           98 FVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDR---FKNLVLVHAARYAADLSYLPLMQELEKRYEGKL------RI  168 (248)
T ss_dssp             CSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCTT---CSEEEEEEEESSGGGCTTHHHHHHHHHHTTTSE------EE
T ss_pred             eEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhCC---CCcEEEEEEcCCHHHhhHHHHHHHHHHhCcCcE------EE
Confidence            9988 43 6899999999999999999998755432   27899999999999999999999998764 467      88


Q ss_pred             EEEEecCCC---CccchhhhHHHcH-HHHHHH-H-hCCCEEEEeCCCCCCHHHHHHHH-HH
Q 006868          543 YVAFSRKQP---QKVYVQHKMLEQS-QRIWNL-L-LSKASIYVAGSATKMPSDVWSTF-EE  596 (628)
Q Consensus       543 ~~a~Sr~~~---~k~yVqd~l~~~~-~~v~~~-l-~~~~~iyvCG~~~~M~~~v~~~L-~~  596 (628)
                      +.++|+++.   .+++|++.+.+.. +....+ . ..++.+|+|||+ .|.++|++.| .+
T Consensus       169 ~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp~-~m~~~v~~~l~~~  228 (248)
T 1fdr_A          169 QTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNP-QMVRDTQQLLKET  228 (248)
T ss_dssp             EEEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECH-HHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCCH-HHHHHHHHHHHHH
Confidence            899999764   3689999887642 222111 1 237899999998 9999998887 54

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=99.92  E-value=4.4e-26  Score=229.16  Aligned_cols=179  Identities=18%  Similarity=0.207  Sum_probs=146.1

Q ss_pred             CCHHHHHHhcC--C-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCC
Q 006868          391 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP  467 (628)
Q Consensus       391 ~p~~~l~~~lp--~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~  467 (628)
                      .|||++...+|  . ...|+|||+|+| .+.+.++|+|+         +...|.+|+||+++++  |++|.+.+|.|.|.
T Consensus        43 ~pGq~v~l~~~~~g~~~~R~ysi~s~~-~~~~~~~l~vk---------~~~~G~~S~~l~~l~~--Gd~v~v~gP~G~f~  110 (243)
T 2eix_A           43 PIGQHMSVKATVDGKEIYRPYTPVSSD-DEKGYFDLIIK---------VYEKGQMSQYIDHLNP--GDFLQVRGPKGQFD  110 (243)
T ss_dssp             CTTCEEEEEEEETTEEEEEEECCCSCT-TCCSEEEEEEE---------CCTTCHHHHHHHTCCT--TCEEEEEEEECSCC
T ss_pred             CCceEEEEEEeeCCCEEEeeeeecCCC-CCCCEEEEEEE---------EcCCCCcchHhhcCCC--CCEEEEECCeEEEE
Confidence            58888877776  2 368999999998 45689999994         3457999999999999  99999999999999


Q ss_pred             CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868          468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  546 (628)
Q Consensus       468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~  546 (628)
                      ++ +...+++|||+|||||||+++++++......  ..+++|+||+|+.+|++|.+||+++.+.++++      +++.++
T Consensus       111 ~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~--~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~  182 (243)
T 2eix_A          111 YKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKE--KTIINLIFANVNEDDILLRTELDDMAKKYSNF------KVYYVL  182 (243)
T ss_dssp             CCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTTC--CCEEEEEEEEEEGGGCTTHHHHHHHHHHCTTE------EEEEEE
T ss_pred             eCCCCCcEEEEEecCccHHHHHHHHHHHHhCCCC--CcEEEEEEEcCCHHHhhHHHHHHHHHHHCCCe------EEEEEe
Confidence            88 5578999999999999999999998764211  27899999999999999999999998875777      899999


Q ss_pred             ecCCC----CccchhhhHHHcHHHHHHHHh---CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          547 SRKQP----QKVYVQHKMLEQSQRIWNLLL---SKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       547 Sr~~~----~k~yVqd~l~~~~~~v~~~l~---~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      |++++    .++||++.+.+      +++.   .++.+|+|||+ .|.++|++.|.+
T Consensus       183 s~~~~~~~g~~g~v~~~~l~------~~~~~~~~~~~vy~CGp~-~m~~~v~~~l~~  232 (243)
T 2eix_A          183 NNPPAGWTGGVGFVSADMIK------QHFSPPSSDIKVMMCGPP-MMNKAMQGHLET  232 (243)
T ss_dssp             EECCTTCCSEESSCCHHHHH------HHSCCTTSSEEEEEESSH-HHHHHHHHHHHH
T ss_pred             CCCCccccCcCCccCHHHHH------HhcCCCCCCeEEEEECCH-HHHHHHHHHHHH
Confidence            98543    36788864322      1222   35689999998 899999888765

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=99.92  E-value=3.7e-26  Score=234.07  Aligned_cols=188  Identities=18%  Similarity=0.179  Sum_probs=148.6

Q ss_pred             CCHHHHHHhcC---CCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCC
Q 006868          391 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP  467 (628)
Q Consensus       391 ~p~~~l~~~lp---~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~  467 (628)
                      .|||++...+|   ...+|+|||+|+| .+++.++|+|+++.+.+..+....|.+|+||+++++  |++|.+.+|.|.|.
T Consensus        48 ~pGQ~v~l~~~~~g~~~~R~ySi~s~~-~~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~~  124 (275)
T 1umk_A           48 PVGQHIYLSARIDGNLVVRPYTPISSD-DDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQI--GDTIEFRGPSGLLV  124 (275)
T ss_dssp             CTTCEEEEEEEETTEEEEEEECCSSCT-TCCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCT--TCEEEEEEEECSEE
T ss_pred             CCCcEEEEEEeeCCcEEEeccccCCcc-CCCCeEEEEEEEeccCcccccCCCChhHHHHhcCCC--CCEEEEEcCccceE
Confidence            57888776654   2478999999998 457899999987655544333467999999999999  99999999999874


Q ss_pred             C--------C-C--------CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhc
Q 006868          468 R--------P-P--------PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN  530 (628)
Q Consensus       468 l--------p-~--------~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~  530 (628)
                      +        + +        ...++||||+|||||||+++++++.....  ...+++|+||+|+.+|++|.+||+++.+.
T Consensus       125 ~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~~--~~~~v~l~~~~r~~~d~~~~~el~~l~~~  202 (275)
T 1umk_A          125 YQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPD--DHTVCHLLFANQTEKDILLRPELEELRNK  202 (275)
T ss_dssp             EEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTT--CCCEEEEEEEESSGGGCTTHHHHHHHHHH
T ss_pred             ecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhCCC--CCcEEEEEEEcCCHHHhhHHHHHHHHHHh
Confidence            3        2 1        35799999999999999999999876421  12789999999999999999999999876


Q ss_pred             CC-CcccCCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHHH---hCCCEEEEeCCCCCCHH-HHHHHHHH
Q 006868          531 DG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLL---LSKASIYVAGSATKMPS-DVWSTFEE  596 (628)
Q Consensus       531 ~g-~l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l---~~~~~iyvCG~~~~M~~-~v~~~L~~  596 (628)
                      ++ ++      +++.++|+++.    .++||++.+.+.      .+   .+++.+|+|||+ .|++ ++++.|.+
T Consensus       203 ~~~~~------~~~~~~s~~~~~~~~~~g~v~~~~l~~------~l~~~~~~~~vyvCGp~-~m~~~~v~~~L~~  264 (275)
T 1umk_A          203 HSARF------KLWYTLDRAPEAWDYGQGFVNEEMIRD------HLPPPEEEPLVLMCGPP-PMIQYACLPNLDH  264 (275)
T ss_dssp             CTTTE------EEEEEESSCCSSCSSEESSCCHHHHHH------HSCCGGGCCEEEEESCH-HHHHHTTHHHHHH
T ss_pred             CcCcE------EEEEEEcCCCccccCccCccCHHHHHH------hcCCCCCCeEEEEECCH-HHHHHHHHHHHHH
Confidence            54 56      78889998653    367888754322      22   247899999998 8998 88887765

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.92  E-value=1.6e-25  Score=236.41  Aligned_cols=177  Identities=21%  Similarity=0.283  Sum_probs=149.8

Q ss_pred             CCHHHHHHhcCC-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHh-hCcCCCCCceEEEEeecCCCCC
Q 006868          391 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYIPAWFQKGSLPR  468 (628)
Q Consensus       391 ~p~~~l~~~lp~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v~i~~~~g~F~l  468 (628)
                      .||||+...+|. ..+|+|||+|+|.  .+.++|+|+         +...|.+|+|| .++++  |+.|.+.+|.|.|.+
T Consensus       140 ~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk---------~~~~G~~S~~L~~~l~~--Gd~v~v~gP~G~f~~  206 (338)
T 1krh_A          140 LAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVR---------NVPQGKMSEYLSVQAKA--GDKMSFTGPFGSFYL  206 (338)
T ss_dssp             CTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEE---------CCTTCHHHHHHHTTCCT--TCEEEEEEEECSCSC
T ss_pred             CCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEE---------EcCCCCchhhHhhccCC--CCEEEEECCccceEe
Confidence            589998888886 5789999999983  789999994         34569999999 58999  999999999999998


Q ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006868          469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR  548 (628)
Q Consensus       469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr  548 (628)
                      +....|+||||+|||||||+++++++...+..   .+++||||+|+++|++|.+||+++.+.++++      +++.++|+
T Consensus       207 ~~~~~~~vliagGtGiaP~~s~l~~l~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~  277 (338)
T 1krh_A          207 RDVKRPVLMLAGGTGIAPFLSMLQVLEQKGSE---HPVRLVFGVTQDCDLVALEQLDALQQKLPWF------EYRTVVAH  277 (338)
T ss_dssp             CCCSSCEEEEEEGGGHHHHHHHHHHHHHHCCS---SCEEEEEEESSGGGCCCHHHHHHHHHHCTTE------EEEEEETT
T ss_pred             CCCCceEEEEEccccHhHHHHHHHHHHHcCCC---CeEEEEEEeCCHHHhhhHHHHHHHHHhCCCe------EEEEEEec
Confidence            83348999999999999999999999876533   7899999999999999999999998876777      89999998


Q ss_pred             CCC---CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          549 KQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       549 ~~~---~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ++.   .++||++.+.+.      .+. .+..+|+|||+ .|.+++++.|.+
T Consensus       278 ~~~~~~~~g~v~~~l~~~------~~~~~~~~vy~CGp~-~m~~~v~~~l~~  322 (338)
T 1krh_A          278 AESQHERKGYVTGHIEYD------WLNGGEVDVYLCGPV-PMVEAVRSWLDT  322 (338)
T ss_dssp             CCSSSSEESCSGGGCCGG------GGGGGCSEEEEEEEH-HHHHHHHHHHHH
T ss_pred             CCCCCCccCccCHHHHHh------hcccCCcEEEEECCH-HHHHHHHHHHHH
Confidence            654   368999887642      112 47799999998 999998887765

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=99.92  E-value=2.6e-26  Score=234.75  Aligned_cols=200  Identities=17%  Similarity=0.234  Sum_probs=154.4

Q ss_pred             CCHHHHHHhcC---CCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE-eecCCC
Q 006868          391 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGSL  466 (628)
Q Consensus       391 ~p~~~l~~~lp---~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~-~~~g~F  466 (628)
                      .|||++...+|   ....|+|||+|+|  ..+.++|+|.         +...|.+|+||+++++  |++|.+. +|.|.|
T Consensus        48 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~--~~~~~~~~v~---------~~~~G~~s~~l~~l~~--Gd~v~v~~gP~G~~  114 (271)
T 4fk8_A           48 NNGEFTMVGLEVDGKPLTRAYSIVSPN--YEEHLEFFSI---------KVQNGPLTSRLQHLKV--GDPVLIGKKPTGTL  114 (271)
T ss_dssp             CTTCEEEEEEEETTEEEEEEEECCSCT--TSSSEEEEEE---------CCTTCTTHHHHTTCCT--TCEEEEESCCBCSC
T ss_pred             CCCCEEEEEccCCCceeeeeEeccCCC--CCCcEEEEEE---------EECCCchhhHHhcCCC--CCEEEEecCCCcce
Confidence            58999888887   2358999999998  4577888883         3357999999999999  9999999 999999


Q ss_pred             CCCC--CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC--------Cccc
Q 006868          467 PRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG--------VFSE  536 (628)
Q Consensus       467 ~lp~--~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g--------~l~~  536 (628)
                      .++.  ...++||||+|||||||+++++++......   .+++|+||+|+.+|++|.+||+++.+++.        ++  
T Consensus       115 ~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~--  189 (271)
T 4fk8_A          115 VADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERF---DKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKL--  189 (271)
T ss_dssp             CGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHHC---SEEEEEECCCSHHHHHHHHHHHTCCTTCTTHHHHHHHHE--
T ss_pred             ecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCCC---CCEEEEEecCCHHHHhHHHHHHHHHHhCccccccccceE--
Confidence            8873  678999999999999999999998765433   78999999999999999999999887643        35  


Q ss_pred             CCCCcEEEEEecCCC-CccchhhhHHHcHHHHHHHH------hCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHH
Q 006868          537 AKGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLL------LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSA  609 (628)
Q Consensus       537 ~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~~~v~~~l------~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a  609 (628)
                          +++.++|+++. .+++|++.+.+.  .+.+.+      .+++.+|+|||+ .|.++|++.|.+..     ++.   
T Consensus       190 ----~~~~~~s~~~~~~~G~v~~~~~~~--~l~~~~~~~~~~~~~~~v~vCGp~-~m~~~v~~~l~~~g-----v~~---  254 (271)
T 4fk8_A          190 ----VYYPTVTREEFENEGRITDLIASG--KLFTDLDMPPFSPEQDRVMLCGST-AMLKDTTELLKKAG-----LVE---  254 (271)
T ss_dssp             ----EEEECC-------CCHHHHHHHHS--HHHHHTTCCCCCTTTEEEEEEECH-HHHHHHHHHHHHTT-----CCB---
T ss_pred             ----EEEEEecCCccccccccChHHhcc--hhhhhcccccCCCCCCEEEEECCH-HHHHHHHHHHHHcC-----Cch---
Confidence                68888888764 578999887653  111111      247899999998 99999998887543     322   


Q ss_pred             HHHHHHHHHcCCEEEeec
Q 006868          610 ANWLKALQRAGRYHVEAW  627 (628)
Q Consensus       610 ~~~l~~l~~~~Ry~~dvw  627 (628)
                          .++...|+|+.|.|
T Consensus       255 ----~~i~~~~~~~~E~y  268 (271)
T 4fk8_A          255 ----GKNSAPGHYVIERA  268 (271)
T ss_dssp             ----CBTTBCBSEEEEES
T ss_pred             ----hhcCCCCcEEEEEe
Confidence                12334678888875

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=99.92  E-value=1.6e-25  Score=224.98  Aligned_cols=180  Identities=17%  Similarity=0.276  Sum_probs=145.8

Q ss_pred             CCHHHHHHhcCCC-----cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecC
Q 006868          391 MPIDWLVQLVPPL-----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG  464 (628)
Q Consensus       391 ~p~~~l~~~lp~~-----~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g  464 (628)
                      .|+|++...+|..     .+|+|||+|+|  ..+.++|+|+.+..    +....|.+|+||+ .+++  |++|.+.+|.|
T Consensus        35 ~pGq~v~l~~~~~~~~~~~~R~ySi~s~~--~~~~~~i~vk~~~~----~~~~~G~~S~~l~~~l~~--G~~v~v~gP~G  106 (243)
T 4eh1_A           35 QPGQYIGIEVTPEGSDYREIRQYSLSHAS--NGREYRISVKREGV----GSDNPGLVSHYLHNNVKV--GDSVKLYAPAG  106 (243)
T ss_dssp             CTTCEEEEEECCSSCSSCEEEEEEBCSCC--CSSCEEEEEECTTT----TSSSCCHHHHHHHHHCCT--TCEEEEEEEEC
T ss_pred             CCCCEEEEEEecCCCccccceeeEeccCC--CCCeEEEEEEEeec----CCCCCCeehhHHHhcCCC--CCEEEEEccCc
Confidence            5899998888742     46999999998  45789999843210    1126699999996 6999  99999999999


Q ss_pred             CCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006868          465 SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  544 (628)
Q Consensus       465 ~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~  544 (628)
                      .|.+++...|+||||+|||||||+++++++..+...   . ++|+||+|+.+|++|.+||+++.+.+ ++      ++++
T Consensus       107 ~~~~~~~~~~~vliagGtGitp~~~~l~~l~~~~~~---~-v~l~~~~r~~~~~~~~~el~~l~~~~-~~------~~~~  175 (243)
T 4eh1_A          107 DFFYVERERPVVLISAGVGATPMQAILHTLAKQNKS---G-VTYLYACNSAKEHTFAQETAQLIAQQ-GW------MQQV  175 (243)
T ss_dssp             SCCCCCCSSCEEEEEEGGGHHHHHHHHHHHHHTTCC---S-EEEEEEESSGGGCTTHHHHHHHHHHH-TC------EEEE
T ss_pred             ccCcCCCCCCEEEEEccccHHHHHHHHHHHHHcCCC---e-EEEEEEeCChhhhhHHHHHHHHHHhC-Ce------EEEE
Confidence            999886678999999999999999999999886542   4 99999999999999999999999884 67      8999


Q ss_pred             EEecCCC---CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          545 AFSRKQP---QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       545 a~Sr~~~---~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                      ++|++..   .++++++.+. .      +-..++.||+|||+ .|.++|++.|.+.
T Consensus       176 ~~s~~~~~~~~~g~~~~~~~-~------~~~~~~~vyvCGp~-~m~~~v~~~l~~~  223 (243)
T 4eh1_A          176 WYRDESADDVLQGEMQLAEL-I------LPIEDGDFYLCGPI-GFMQYVVKQLLAL  223 (243)
T ss_dssp             EESSCCCTTCEESSCCCTTS-C------CCTTTCEEEEEECH-HHHHHHHHHHHHH
T ss_pred             EEccCCCcccccCCccHHHe-e------ccCCCcEEEEECCH-HHHHHHHHHHHHc
Confidence            9998654   3567665443 1      11248899999998 8999998888753

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=99.91  E-value=2.7e-25  Score=227.43  Aligned_cols=183  Identities=17%  Similarity=0.219  Sum_probs=146.7

Q ss_pred             CCHHHHHHhcCC----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE-eecCC
Q 006868          391 MPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGS  465 (628)
Q Consensus       391 ~p~~~l~~~lp~----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~-~~~g~  465 (628)
                      .||||+...+|.    ..+|+|||+|+|.  .+.++|+|+.         .+.|.+|+||+++++  |+.|.+. +|.|.
T Consensus        45 ~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~--~~~~~l~v~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gP~G~  111 (272)
T 2bgi_A           45 RSGEFVMIGLLDDNGKPIMRAYSIASPAW--DEELEFYSIK---------VPDGPLTSRLQHIKV--GEQIILRPKPVGT  111 (272)
T ss_dssp             CTTCEEEEEEECTTSCEEEEEEECCSCTT--CSEEEEEEEC---------CTTCTTHHHHTTCCT--TCEEEEEEEEECS
T ss_pred             CCCCEEEEEeccCCCCeeeeeeeeccCCC--CCeEEEEEEE---------ccCCCchhHHHhCCC--CCEEEEeeCCCCc
Confidence            589998887772    3689999999983  4789998843         356999999999999  9999999 89999


Q ss_pred             CCCC-CC-CCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHH-HhHh-----cC--CCcc
Q 006868          466 LPRP-PP-SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWL-SHSL-----ND--GVFS  535 (628)
Q Consensus       466 F~lp-~~-~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~-~~~~-----~~--g~l~  535 (628)
                      |.++ .. ..++||||+|||||||+++++++......   .+++|+||+|+.+|++|.+||+ ++.+     .+  +++ 
T Consensus       112 f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~-  187 (272)
T 2bgi_A          112 LVIDALLPGKRLWFLATGTGIAPFASLMREPEAYEKF---DEVIMMHACRTVAELEYGRQLVEALQEDPLIGELVEGKL-  187 (272)
T ss_dssp             CCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGTSC---SEEEEEEEESSSGGGHHHHHHHHHHHHCTTTTTTSTTTE-
T ss_pred             ccccccccCCeEEEEeecccHHHHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhHHHHHHHHHHhcchhhcccCCcE-
Confidence            9887 43 68999999999999999999987654332   7899999999999999999999 8876     32  566 


Q ss_pred             cCCCCcEEEEEecCCC-CccchhhhHHHcH-HHHHHH--H-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          536 EAKGGGFYVAFSRKQP-QKVYVQHKMLEQS-QRIWNL--L-LSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       536 ~~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~-~~v~~~--l-~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                           +++.++||++. .++||++.+.+.. +....+  + .+++.+|+|||+ .|.++|++.|.+
T Consensus       188 -----~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~  247 (272)
T 2bgi_A          188 -----KYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGSL-AFNVDVMKVLES  247 (272)
T ss_dssp             -----EEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEECH-HHHHHHHHHHHT
T ss_pred             -----EEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECCH-HHHHHHHHHHHH
Confidence                 78889998743 4789999887542 111100  1 147899999998 999998877754

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=99.91  E-value=1.5e-24  Score=234.01  Aligned_cols=180  Identities=17%  Similarity=0.225  Sum_probs=145.6

Q ss_pred             CCHHHHHHhc--C--C---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEee
Q 006868          391 MPIDWLVQLV--P--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQ  462 (628)
Q Consensus       391 ~p~~~l~~~l--p--~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~  462 (628)
                      .||||+...+  |  .   ..+|+|||+|+|  .++.++|+|+....   ....+.|.+|+||+ ++++  ||+|.+.+|
T Consensus       185 ~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p--~~~~~~i~Vk~~~~---~~~~~~G~~S~~L~~~l~~--Gd~v~v~gP  257 (399)
T 4g1v_A          185 TPGQYITVNTHPIRQENQYDALRHYSLCSAS--TKNGLRFAVKMEAA---RENFPAGLVSEYLHKDAKV--GDEIKLSAP  257 (399)
T ss_dssp             CTTCEEEEEECCCSTTCCSCEEEEEEBSCSC--CTTCEEEEEECCCC---BTTBCCCHHHHHHHHTCCT--TCEEEEEEE
T ss_pred             CCCCEEEEEEeCCCCCCccceeeeecccCCC--CCCeEEEEEEeccC---CCCCCCCEehhHHHhCCCC--CCEEEEEec
Confidence            4888887765  3  3   358999999998  45789999854210   01135899999996 8999  999999999


Q ss_pred             cCCCCCC-C----CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccC
Q 006868          463 KGSLPRP-P----PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEA  537 (628)
Q Consensus       463 ~g~F~lp-~----~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~  537 (628)
                      .|.|.++ +    ...|+||||+|||||||++|++++...+..   .+++|+||+|+.+|++|.++|+++.+.++++   
T Consensus       258 ~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~---  331 (399)
T 4g1v_A          258 AGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNPN---RPIYWIQSSYDEKTQAFKKHVDELLAECANV---  331 (399)
T ss_dssp             ECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCTT---SCEEEEEEESSSTTSTTHHHHHHHHTTCSSE---
T ss_pred             ccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCCC---CCEEEEEecCCHHHhhhHHHHHHHHHhCCCc---
Confidence            9999998 5    578999999999999999999999887644   7899999999999999999999999876777   


Q ss_pred             CCCcEEEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          538 KGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       538 ~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                         ++++++|+++   ++++.      +.+.+.+.+++.+|+|||. .|.++|++.|.+
T Consensus       332 ---~~~~~~s~~~---g~~~~------~~l~~~~~~~~~vyvCGp~-~m~~~v~~~L~~  377 (399)
T 4g1v_A          332 ---DKIIVHTDTE---PLINA------AFLKEKSPAHADVYTCGSL-AFMQAMIGHLKE  377 (399)
T ss_dssp             ---EEEEEETTTS---CCCCH------HHHHHHSCSSCEEEEEECH-HHHHHHHHHHHH
T ss_pred             ---EEEEEEeCCC---CcccH------HHHHhhCCCCCEEEEECCH-HHHHHHHHHHHH
Confidence               8999999864   45542      2223344558999999998 999998888754

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=99.91  E-value=8.7e-25  Score=235.70  Aligned_cols=177  Identities=15%  Similarity=0.222  Sum_probs=143.2

Q ss_pred             CCHHHHHHhcCC-----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecC
Q 006868          391 MPIDWLVQLVPP-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG  464 (628)
Q Consensus       391 ~p~~~l~~~lp~-----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g  464 (628)
                      .|||++...+|+     ..+|+|||+|+|  .++.++|+|+.         ...|.+|+||++ +++  ||+|.+.+|.|
T Consensus       184 ~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p--~~~~~~i~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~G  250 (396)
T 1gvh_A          184 RPGQYLGVWLKPEGFPHQEIRQYSLTRKP--DGKGYRIAVKR---------EEGGQVSNWLHNHANV--GDVVKLVAPAG  250 (396)
T ss_dssp             CTTCEEEEEECCTTCSSCEEEEEECCSCC--CSSCEEEEEEC---------CTTCHHHHHHHHTCCT--TCEEEEEEEEC
T ss_pred             CCCCeEEEEecCCCCccceeecceeccCC--CCCeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCCc
Confidence            478887777663     358999999998  36789999943         346999999985 999  99999999999


Q ss_pred             CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEE
Q 006868          465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY  543 (628)
Q Consensus       465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~  543 (628)
                      .|.++ +..+|+||||+|||||||+++++++...+..   .+++|+||+|+.+|++|++||+++.+.++++      +++
T Consensus       251 ~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~  321 (396)
T 1gvh_A          251 DFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGHT---AQVNWFHAAENGDVHAFADEVKELGQSLPRF------TAH  321 (396)
T ss_dssp             SCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTCC---SCEEEEEEESCTTTCCSHHHHHHHHHTSSSE------EEE
T ss_pred             ceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhhHHHHHHHHHHCCCe------EEE
Confidence            99998 6788999999999999999999999876543   7899999999999999999999998876777      889


Q ss_pred             EEEecCCC---------Cccchhhh-HHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          544 VAFSRKQP---------QKVYVQHK-MLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       544 ~a~Sr~~~---------~k~yVqd~-l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      +++|+++.         .+++++.. +.+..     . ..++.+|+|||+ .|.++|++.|.+
T Consensus       322 ~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~~-----~-~~~~~vyvCGp~-~m~~~v~~~L~~  377 (396)
T 1gvh_A          322 TWYRQPSEADRAKGQFDSEGLMDLSKLEGAF-----S-DPTMQFYLCGPV-GFMQFTAKQLVD  377 (396)
T ss_dssp             EEESSCCHHHHHHTCCSEESSCCGGGSSSCC-----C-CTTCEEEEESCH-HHHHHHHHHHHH
T ss_pred             EEECCCCccccccCccCccCcCCHHHHhhcc-----C-CCCCEEEEeCCH-HHHHHHHHHHHH
Confidence            99998653         23455432 22110     1 127899999998 899998887764

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=99.91  E-value=2.1e-25  Score=226.27  Aligned_cols=184  Identities=17%  Similarity=0.199  Sum_probs=146.4

Q ss_pred             CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE-eecCC
Q 006868          390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGS  465 (628)
Q Consensus       390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~-~~~g~  465 (628)
                      ..|||++...+|.   ...|+|||+|+|.  .+.++|+|..         .+.|.+|+||+++++  |++|.+. +|.|.
T Consensus        31 ~~pGq~v~l~~~~~g~~~~R~ySi~s~~~--~~~~~~~i~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gp~G~   97 (257)
T 2qdx_A           31 FKTGQFVMIGLEVDGRPLMRAYSIASPNY--EEHLEFFSIK---------VPDGPLTSRLQHLKE--GDELMVSRKPTGT   97 (257)
T ss_dssp             CCTTCEEEEEEEETTEEEEEEEECCSCTT--SSEEEEEEEC---------CTTCTTHHHHTTCCT--TCEEEECSCCBCS
T ss_pred             cCCCCEEEEEecCCCCceeeeeEeecCCC--CCeEEEEEEE---------eCCCcchhHHHhCCC--CCEEEEecCCCCC
Confidence            3589998777763   4689999999983  4789998843         357999999999999  9999999 79999


Q ss_pred             CCCC-C-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHH-HhHh-----cC--CCcc
Q 006868          466 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWL-SHSL-----ND--GVFS  535 (628)
Q Consensus       466 F~lp-~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~-~~~~-----~~--g~l~  535 (628)
                      |.++ . ...++||||+|||||||+++++++...+..   .+++|+||+|+.+|++|.+||+ ++.+     .+  +++ 
T Consensus        98 f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~-  173 (257)
T 2qdx_A           98 LVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERY---EKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKL-  173 (257)
T ss_dssp             CCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHHC---SEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHE-
T ss_pred             ccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCCC---CeEEEEEEcCCHHHhHhHHHHHHHHHhchhhhccCCCcE-
Confidence            9887 4 368999999999999999999988664322   6899999999999999999999 8876     21  456 


Q ss_pred             cCCCCcEEEEEecCCC-CccchhhhHHHcH-HHHHHH--H-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          536 EAKGGGFYVAFSRKQP-QKVYVQHKMLEQS-QRIWNL--L-LSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       536 ~~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~-~~v~~~--l-~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                           +++.++|+++. .+++|++.+.+.. +....+  + ..++.+|+|||+ .|.++|++.|.+
T Consensus       174 -----~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~  233 (257)
T 2qdx_A          174 -----IYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSP-SMLEETSAVLDS  233 (257)
T ss_dssp             -----EEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEECH-HHHHHHHHHHHH
T ss_pred             -----EEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECCH-HHHHHHHHHHHH
Confidence                 78889998743 4789999887542 111110  1 247899999998 999998887764

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=99.91  E-value=8.4e-25  Score=222.55  Aligned_cols=169  Identities=18%  Similarity=0.234  Sum_probs=138.2

Q ss_pred             CCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-C
Q 006868          391 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-L  466 (628)
Q Consensus       391 ~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F  466 (628)
                      .|+||+...+|.   ..+|+|||+|+| ...+.++|+|+.         .+.|.+|+||+++++  ||+|.+.+|.|. |
T Consensus        35 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~-~~~~~l~~~vk~---------~~~G~~S~~l~~l~~--Gd~v~v~gP~G~~f  102 (262)
T 1ep3_B           35 LPGQFLHLAVPNGAMLLRRPISISSWD-KRAKTCTILYRI---------GDETTGTYKLSKLES--GAKVDVMGPLGNGF  102 (262)
T ss_dssp             STTCEEEECCSCTTCCSCEEEECCEEE-TTTTEEEEEEEC---------CCTTSHHHHHHTCCT--TCEEEEEEEESBCC
T ss_pred             CCCceEEEEcCCCCceeeEEEEeeeec-CCCCEEEEEEEE---------ecCCchHHHHhcCCC--CCEEEEEcccCCCc
Confidence            589998877875   689999999998 357899999943         346999999999999  999999999998 9


Q ss_pred             CCC-C-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006868          467 PRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  544 (628)
Q Consensus       467 ~lp-~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~  544 (628)
                      .++ + ...|+||||+|||||||+++++++...+     .+++||||+|+++|++|.+||+++...          ++++
T Consensus       103 ~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~-----~~v~l~~~~r~~~~~~~~~el~~l~~~----------~~~~  167 (262)
T 1ep3_B          103 PVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG-----CQMTILLGFASENVKILENEFSNLKNV----------TLKI  167 (262)
T ss_dssp             CCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT-----CEEEEEEEESSGGGCCCHHHHHTSTTE----------EEEE
T ss_pred             cCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC-----CeEEEEEEcCCHHHhhhHHHHhhhccC----------cEEE
Confidence            988 3 4789999999999999999999998764     689999999999999999999886543          2333


Q ss_pred             EEecCCC--CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          545 AFSRKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       545 a~Sr~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      + ++++.  .++||++++.+.       +.+++.+|+|||+ .|.+++++ |.+
T Consensus       168 ~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp~-~m~~~v~~-l~~  211 (262)
T 1ep3_B          168 A-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGAP-AMLKAVAK-KYD  211 (262)
T ss_dssp             E-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESCH-HHHHHHHH-HTT
T ss_pred             E-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECCH-HHHHHHHH-HHh
Confidence            3 44432  468999876653       2447899999998 89998887 643

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=99.90  E-value=9.3e-25  Score=222.94  Aligned_cols=188  Identities=17%  Similarity=0.175  Sum_probs=141.3

Q ss_pred             CCHHHHHHhcC---CCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC--
Q 006868          391 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS--  465 (628)
Q Consensus       391 ~p~~~l~~~lp---~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~--  465 (628)
                      .|||++...++   ...+|+|||+|+| ..++.++|+|+++......+....|.+|+||+++++  |+.|.+.+|.|.  
T Consensus        44 ~pGQ~v~l~~~~~g~~~~R~ySi~s~~-~~~~~~~l~vk~~~~~~~~~~~~~G~~s~~l~~l~~--Gd~v~v~gP~G~~~  120 (270)
T 2cnd_A           44 PIGKHIFVCATIEGKLCMRAYTPTSMV-DEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPV--GSYIDVKGPLGHVE  120 (270)
T ss_dssp             CTTCEEEEEEEETTEEEEEEECCCSCT-TCCSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCT--TCEEEEEEEECSEE
T ss_pred             CCCCEEEEEeeeCCcEEEEeeccCCCc-cCCCEEEEEEEEeccCcccccCCCCchhhHHhcCCC--CCEEEEECCcccce
Confidence            57888766554   2468999999998 356899999976521111011135999999999999  999999999996  


Q ss_pred             ------CCCCC---CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-Ccc
Q 006868          466 ------LPRPP---PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFS  535 (628)
Q Consensus       466 ------F~lp~---~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~  535 (628)
                            |.++.   ...|+||||+|||||||+++++++...... ...+++||||+|+.+|++|.+||+++.+.++ .+ 
T Consensus       121 ~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~-~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~-  198 (270)
T 2cnd_A          121 YTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPE-DHTEMHLVYANRTEDDILLRDELDRWAAEYPDRL-  198 (270)
T ss_dssp             CCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTT-CCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTE-
T ss_pred             eccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCCC-CCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcE-
Confidence                  55552   468999999999999999999999875210 1278999999999999999999999987644 46 


Q ss_pred             cCCCCcEEEEEecC---CC----CccchhhhHHHcHHHHHHHHh---CCCEEEEeCCCCCCHHH-HHHHHH
Q 006868          536 EAKGGGFYVAFSRK---QP----QKVYVQHKMLEQSQRIWNLLL---SKASIYVAGSATKMPSD-VWSTFE  595 (628)
Q Consensus       536 ~~~~~~~~~a~Sr~---~~----~k~yVqd~l~~~~~~v~~~l~---~~~~iyvCG~~~~M~~~-v~~~L~  595 (628)
                           +++.++|++   ++    .++||++.+.+.      .+.   .++.+|+|||+ .|++. +++.|.
T Consensus       199 -----~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~------~l~~~~~~~~vyvCGp~-~m~~~~~~~~L~  257 (270)
T 2cnd_A          199 -----KVWYVIDQVKRPEEGWKYSVGFVTEAVLRE------HVPEGGDDTLALACGPP-PMIQFAISPNLE  257 (270)
T ss_dssp             -----EEEEEESCCSCGGGCCCSEESSCCHHHHHH------HSCCCSSSEEEEEECCH-HHHHTTTHHHHH
T ss_pred             -----EEEEEECCCCCCCCCcccccccCCHHHHHH------hcCCCcCCEEEEEECCH-HHHHHHHHHHHH
Confidence                 788888873   11    367888764332      222   25689999998 88886 466664

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=99.90  E-value=4.9e-24  Score=230.36  Aligned_cols=181  Identities=18%  Similarity=0.284  Sum_probs=142.6

Q ss_pred             CCHHHHHHhcC--C---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecC
Q 006868          391 MPIDWLVQLVP--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG  464 (628)
Q Consensus       391 ~p~~~l~~~lp--~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g  464 (628)
                      .|||++...+|  .   ..+|+|||+|+|  .++.++|+|+.+..    ...+.|.+|+||+ ++++  ||.|.+.+|.|
T Consensus       186 ~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p--~~~~~~i~Vk~~~~----~~~~~G~~S~~L~~~l~~--Gd~v~v~gP~G  257 (403)
T 1cqx_A          186 EPGQYTSVAIDVPALGLQQIRQYSLSDMP--NGRTYRISVKREGG----GPQPPGYVSNLLHDHVNV--GDQVKLAAPYG  257 (403)
T ss_dssp             CTTCEEEEEEEETTTTEEEEEEEECCSCC--CSSCEEEEEECCCB----TTBCCCHHHHHHHHHCCT--TCEEEECCCBC
T ss_pred             CCCCEEEEEEecCCCCcceeecceecCCC--CCCeEEEEEEECCC----CCCCCCeehHHHhhCCCC--CCEEEEecCcc
Confidence            47888766665  2   357999999998  36789999964310    1123699999998 5999  99999999999


Q ss_pred             CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEE
Q 006868          465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY  543 (628)
Q Consensus       465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~  543 (628)
                      .|.++ +..+|+||||+|||||||+++++++.. ..   ..+++|+||+|+.+|++|++||+++.+.++++      +++
T Consensus       258 ~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~~---~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~  327 (403)
T 1cqx_A          258 SFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-AP---PRQVVFVHGARNSAVHAMRDRLREAAKTYENL------DLF  327 (403)
T ss_dssp             SCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-SS---CCCEEEEEEESCSSSCHHHHHHHHHHHHCTTE------EEE
T ss_pred             CcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-CC---CCcEEEEEEeCChhhCcHHHHHHHHHHhCCCc------EEE
Confidence            99998 677899999999999999999999876 32   27899999999999999999999998876777      889


Q ss_pred             EEEecCCCC---------ccchhhh-HHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          544 VAFSRKQPQ---------KVYVQHK-MLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       544 ~a~Sr~~~~---------k~yVqd~-l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      +++|+++..         .++++.. +.+.   +   ...++.+|+|||+ .|.++|++.|.+
T Consensus       328 ~~~s~~~~~~~~~~~~~~~G~i~~~~l~~~---~---~~~~~~vyvCGp~-~m~~~v~~~L~~  383 (403)
T 1cqx_A          328 VFYDQPLPEDVQGRDYDYPGLVDVKQIEKS---I---LLPDADYYICGPI-PFMRMQHDALKN  383 (403)
T ss_dssp             EEESSCCTTCCBTTTBSEESSCCGGGSHHH---H---CCTTCEEEEESSH-HHHHHHHHHHHH
T ss_pred             EEECCCCcccccccccCcCCCcCHHHHhhc---c---CCCCCEEEEeCCH-HHHHHHHHHHHH
Confidence            999986542         2344432 2211   0   1237899999998 899988887764

>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...

Probab=99.90  E-value=9.3e-24  Score=195.48  Aligned_cols=143  Identities=29%  Similarity=0.355  Sum_probs=129.0

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCC-CCeEEEEEecCCCCC--CChhHHHHHHHHHhc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPE-EDTVIFVVSTTGQGD--TPDSMKVFWRFLLQK   83 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~-~~~vi~~~sT~g~G~--~p~~~~~F~~~L~~~   83 (628)
                      |+++|+|+|+||||+++|+.|++.+.+.|++++++++++.++.++.+ ++.+||++||||.|.  +|++++.|++++...
T Consensus         1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~   80 (147)
T 1f4p_A            1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEET   80 (147)
T ss_dssp             CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGS
T ss_pred             CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHhc
Confidence            57999999999999999999999999899999999999988888988 999999999999999  999999999998643


Q ss_pred             cCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHH
Q 006868           84 SLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRR  155 (628)
Q Consensus        84 ~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~  155 (628)
                      .     +++++++|||+|+++|++||.+.+.+++.|+.+|++.+.+.+.+|...++ ..+.+.+|.++++++
T Consensus        81 ~-----l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~p~~-~~~~~~~~~~~l~~~  146 (147)
T 1f4p_A           81 G-----AQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRA-ARDDIVGWAHDVRGA  146 (147)
T ss_dssp             C-----CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGGG-GHHHHHHHHHHHHTT
T ss_pred             c-----cCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccccccCchh-HHHHHHHHHHHHHhh
Confidence            2     78999999999999999999999999999999999999888888876443 677889999888653

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.89  E-value=7.4e-24  Score=221.99  Aligned_cols=172  Identities=14%  Similarity=0.214  Sum_probs=140.7

Q ss_pred             CCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCccccc-ccHHhh-CcCCCCCceEEEEeecCCCCC
Q 006868          391 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGL-CSVWLA-GLDPQQGIYIPAWFQKGSLPR  468 (628)
Q Consensus       391 ~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~-~S~~L~-~l~~~~G~~v~i~~~~g~F~l  468 (628)
                      .||||+...+|....|+|||+|+| .+.+.++|+|         ++...|. +|+||+ ++++  |+.|.+.+|.|.|.+
T Consensus        40 ~pGQ~v~l~~~~g~~R~ySi~s~~-~~~~~l~i~V---------k~~~~G~g~S~~L~~~l~~--Gd~v~v~gP~g~f~l  107 (321)
T 2pia_A           40 EAGANLTVAVPNGSRRTYSLCNDS-QERNRYVIAV---------KRDSNGRGGSISFIDDTSE--GDAVEVSLPRNEFPL  107 (321)
T ss_dssp             CTTCEEEEECTTSCEEEEECCSCT-TCCSEEEEEE---------ECCTTSCSHHHHHHHSCCT--TCEEEECCCBCCSCC
T ss_pred             CCCCEEEEECCCCCcEEEEeCCCC-CCCCeEEEEE---------EEecCCcchhHHHHhcCCC--CCEEEEeCCcccccc
Confidence            589998888887789999999998 4567899999         3345688 899998 8999  999999999999999


Q ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006868          469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR  548 (628)
Q Consensus       469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr  548 (628)
                      +....++||||+|||||||++|++++...+.    .+++|+||+|+++|++|.+||+++... .        ++.+.+++
T Consensus       108 ~~~~~~~vliagG~GItP~~s~l~~l~~~~~----~~v~l~~~~r~~~~~~~~~el~~l~~~-~--------~~~~~~~~  174 (321)
T 2pia_A          108 DKRAKSFILVAGGIGITPMLSMARQLRAEGL----RSFRLYYLTRDPEGTAFFDELTSDEWR-S--------DVKIHHDH  174 (321)
T ss_dssp             CTTCSEEEEEEEGGGHHHHHHHHHHHHHHCS----SEEEEEEEESCGGGCTTHHHHHSTTTT-T--------TEEEEECT
T ss_pred             CCCCCCEEEEEecccHhHHHHHHHHHHHcCC----CcEEEEEEECChhhhHHHHHHhcCccC-C--------eEEEEECC
Confidence            8446899999999999999999999987641    689999999999999999999988622 3        45556666


Q ss_pred             CCC-CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          549 KQP-QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       549 ~~~-~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      +.. .+.++++++.+.        ..+..+|+|||+ .|.++|++.|.+
T Consensus       175 ~~~~g~~~~~~ll~~~--------~~~~~vyvCGP~-~m~~~v~~~l~~  214 (321)
T 2pia_A          175 GDPTKAFDFWSVFEKS--------KPAQHVYCCGPQ-ALMDTVRDMTGH  214 (321)
T ss_dssp             TCTTSCCCHHHHHSSC--------CTTEEEEEESCH-HHHHHHHHHTTT
T ss_pred             CcccCccCHHHHhccc--------CCCCEEEEECCH-HHHHHHHHHHHh
Confidence            432 345666555431        347899999998 999999888876

>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}

Probab=99.86  E-value=1.4e-22  Score=194.67  Aligned_cols=149  Identities=24%  Similarity=0.283  Sum_probs=125.6

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCC--------hhHHHHH
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP--------DSMKVFW   77 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p--------~~~~~F~   77 (628)
                      |++++|+|+|+||||+++|+.|++.+... +.++++++++.+..++.+++.|||++|||+.|.+|        ++++.|+
T Consensus         1 M~kilIiY~S~tGnT~~iA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~~d~ii~g~pty~~G~~pg~~~~~~~~~~~~f~   79 (182)
T 2wc1_A            1 MAKIGLFFGSDTGTTRKIAKQIKDMFDDE-VMAKPLNVNRADVADFMAYDFLILGTPTLGDGQLPGLSANAASESWEEFL   79 (182)
T ss_dssp             CCSEEEEECCSSSHHHHHHHHHHTTSCTT-TBCCCEEGGGCCHHHHHHCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHG
T ss_pred             CcEEEEEEECCCchHHHHHHHHHHHhccc-CceEEEEcccCCHHHHhhCCeEEEEEeeCCCCCCCccccccchhHHHHHH
Confidence            57899999999999999999999998754 66788898887777788999999999999889999        9999999


Q ss_pred             HHHHhccCcccccCCcEEEEEecCCcC-hh-HHHHHHHHHHHHHHhcCCeEeecc-------------------eeeeCC
Q 006868           78 RFLLQKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GLGDDQ  136 (628)
Q Consensus        78 ~~L~~~~~~~~~l~~~~~aVfGlGds~-y~-~f~~a~~~l~~~L~~lGa~~v~~~-------------------~~~d~~  136 (628)
                      ++|...     .++|+++++||+|+++ |+ +||.+.+.+++.|.++|++.+.+.                   +...+.
T Consensus        80 ~~l~~~-----~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~~~gl~~d~  154 (182)
T 2wc1_A           80 PRIADQ-----DFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGLALDQ  154 (182)
T ss_dssp             GGGTTC-----CCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTEESSEEECT
T ss_pred             HHhhhc-----cCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCceeeeeccC
Confidence            887543     3889999999999997 86 799999999999999999998763                   343332


Q ss_pred             CC--CCchhhHHHHHHHHHHHHHhhC
Q 006868          137 HP--SGYEGALDPWMRSLWRRLHQID  160 (628)
Q Consensus       137 ~~--~g~~~~~~~W~~~l~~~l~~~~  160 (628)
                      ++  +..++.+++|.++|++.|...+
T Consensus       155 ~~~~~~~~~~~~~w~~~l~~~l~~~~  180 (182)
T 2wc1_A          155 DNQAALTPERLKGWLSLIAADFGLVL  180 (182)
T ss_dssp             TTCGGGHHHHHHHHHHHTHHHHTCCC
T ss_pred             CCCccccHHHHHHHHHHHHHHHhccc
Confidence            21  1258889999999999986543

>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*

Probab=99.85  E-value=2.3e-22  Score=189.80  Aligned_cols=140  Identities=21%  Similarity=0.277  Sum_probs=116.1

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL   85 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~   85 (628)
                      |++++|+|+|+||||+++|+.|++.+   |. +++.++++++..++.+++.|||++||||.|.+|+++..|+++|...  
T Consensus         1 M~k~~I~Y~S~tGnT~~~A~~ia~~l---g~-~~~~~~~~~~~~~l~~~d~ii~g~pt~~~g~~p~~~~~f~~~l~~~--   74 (164)
T 2bmv_A            1 MGKIGIFFGTDSGNAEAIAEKISKAI---GN-AEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLEAS--   74 (164)
T ss_dssp             -CCEEEEECCSSSHHHHHHHHHHHHH---CS-EEEEEGGGCCHHHHTTCSEEEEEEEEETTTEECHHHHHHHTTCCTH--
T ss_pred             CCeEEEEEECCCchHHHHHHHHHHHc---CC-cEEEecccCCHhHHhhCCEEEEEECCcCCCcCcHHHHHHHHHHhhh--
Confidence            57899999999999999999999998   55 8899999888888889999999999999999999999999887532  


Q ss_pred             cccccCCcEEEEEecCCcC-hh-HHHHHHHHHHHHHHhcCCeEeecc--------------------eeeeCCCC-CCch
Q 006868           86 SKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER--------------------GLGDDQHP-SGYE  142 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds~-y~-~f~~a~~~l~~~L~~lGa~~v~~~--------------------~~~d~~~~-~g~~  142 (628)
                         .+++++++|||+||+. |+ .||.+++.++++|++  ++++.+.                    ...|...+ +..+
T Consensus        75 ---~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~~~  149 (164)
T 2bmv_A           75 ---DFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTD  149 (164)
T ss_dssp             ---HHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSEEECTTTCGGGHH
T ss_pred             ---hcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCccCCCCCccccCH
Confidence               2789999999999995 98 499999999999988  7777652                    22333222 2357


Q ss_pred             hhHHHHHHHHHHHH
Q 006868          143 GALDPWMRSLWRRL  156 (628)
Q Consensus       143 ~~~~~W~~~l~~~l  156 (628)
                      +.+++|.+++++.|
T Consensus       150 ~~~~~w~~~l~~~l  163 (164)
T 2bmv_A          150 ERISKWVEQVKGSF  163 (164)
T ss_dssp             HHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            88999999886543

>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1

Probab=99.85  E-value=5.9e-22  Score=189.87  Aligned_cols=145  Identities=22%  Similarity=0.309  Sum_probs=122.6

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCC--------hhHHHHHH
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP--------DSMKVFWR   78 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p--------~~~~~F~~   78 (628)
                      ++++|+|+|+||||+++|+.|++.+.. ++.++++++++.+..++.+++.|||++|||+.|++|        ++++.|++
T Consensus         1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~-~~~v~~~~~~~~~~~~l~~~d~iilg~pt~~~G~~pg~~~~~~~~~~~~fl~   79 (179)
T 1yob_A            1 AKIGLFFGSNTGKTRKVAKSIKKRFDD-ETMSDALNVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFLP   79 (179)
T ss_dssp             CCEEEEECCSSSHHHHHHHHHHTTSCT-TTBCCCEEGGGCCHHHHHTCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHH
T ss_pred             CeEEEEEECCCcHHHHHHHHHHHHhCC-CCceEEEEhhhCCHHHHhcCCEEEEEeccCCCCcCCcccccccchHHHHHHH
Confidence            479999999999999999999999865 566788899887777788999999999999889999        99999999


Q ss_pred             HHHhccCcccccCCcEEEEEecCCcC-hh-HHHHHHHHHHHHHHhcCCeEeecc-------------------ee-eeCC
Q 006868           79 FLLQKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQ  136 (628)
Q Consensus        79 ~L~~~~~~~~~l~~~~~aVfGlGds~-y~-~f~~a~~~l~~~L~~lGa~~v~~~-------------------~~-~d~~  136 (628)
                      +|....     ++|+++++||+||+. |+ +||.+++.+++.|+++|++.+.+.                   +. +|..
T Consensus        80 ~l~~~~-----l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f~gl~~d~~  154 (179)
T 1yob_A           80 KIEGLD-----FSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGLALDLD  154 (179)
T ss_dssp             HHTTCC-----CTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBSSEEECTT
T ss_pred             Hhhhcc-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCceeccccCCC
Confidence            985432     889999999999997 97 699999999999999999998653                   22 3432


Q ss_pred             C-CCCchhhHHHHHHHHHHHHH
Q 006868          137 H-PSGYEGALDPWMRSLWRRLH  157 (628)
Q Consensus       137 ~-~~g~~~~~~~W~~~l~~~l~  157 (628)
                      + ++..++.+++|.+++++.|.
T Consensus       155 ~~~~~~~~~i~~w~~~l~~~~~  176 (179)
T 1yob_A          155 NQSGKTDERVAAWLAQIAPEFG  176 (179)
T ss_dssp             TCGGGHHHHHHHHHHHHGGGGT
T ss_pred             CCCcccHHHHHHHHHHHHHHHh
Confidence            1 12368899999999887663

>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1

Probab=99.84  E-value=7e-21  Score=181.35  Aligned_cols=142  Identities=25%  Similarity=0.357  Sum_probs=119.2

Q ss_pred             cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC-CccCCCCCCeEEEEEecCCCCCC----ChhHHHHH-HHHH
Q 006868            8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARCLPEEDTVIFVVSTTGQGDT----PDSMKVFW-RFLL   81 (628)
Q Consensus         8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~-~~~~l~~~~~vi~~~sT~g~G~~----p~~~~~F~-~~L~   81 (628)
                      +++|+|+|+||||+++|+.|++.+.+.  .+++.++++. +..++.+++.|||++||||.|.+    |+++..|+ ++|.
T Consensus         1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~--~~~~~~~~~~~~~~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~   78 (173)
T 2fcr_A            1 KIGIFFSTSTGNTTEVADFIGKTLGAK--ADAPIDVDDVTDPQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLP   78 (173)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHGGG--BCCCEEGGGCSCGGGGGGCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGG
T ss_pred             CEEEEEECCCchHHHHHHHHHHHhccC--CcEEEehhhcCChhHHccCCEEEEEEeecCCCCcCccCcHHHHHHHHhhcc
Confidence            589999999999999999999999764  5678888887 67788899999999999988999    99999999 8775


Q ss_pred             hccCcccccCCcEEEEEecCCcC-hh-HHHHHHHHHHHHHHhcCCeEeecc-------------------ee-eeCC-CC
Q 006868           82 QKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQ-HP  138 (628)
Q Consensus        82 ~~~~~~~~l~~~~~aVfGlGds~-y~-~f~~a~~~l~~~L~~lGa~~v~~~-------------------~~-~d~~-~~  138 (628)
                      ...     ++|++++|||+||++ |+ +||.+++.+++.|+++|++.+.+.                   +. +|.. .+
T Consensus        79 ~~~-----l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~  153 (173)
T 2fcr_A           79 EVD-----MKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDMVNDQ  153 (173)
T ss_dssp             GCC-----CTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSEEEETTTCS
T ss_pred             ccc-----cCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccchhhhCCeeeeeeecCCCCc
Confidence            432     889999999999998 85 899999999999999999988652                   11 2322 12


Q ss_pred             CCchhhHHHHHHHHHHHH
Q 006868          139 SGYEGALDPWMRSLWRRL  156 (628)
Q Consensus       139 ~g~~~~~~~W~~~l~~~l  156 (628)
                      +..++.++.|.+++.+.|
T Consensus       154 ~~~~~~i~~w~~~i~~~~  171 (173)
T 2fcr_A          154 IPMEKRVAGWVEAVVSET  171 (173)
T ss_dssp             SCHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHh
Confidence            236888999999998776

>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*

Probab=99.84  E-value=8.9e-21  Score=173.49  Aligned_cols=135  Identities=21%  Similarity=0.208  Sum_probs=118.7

Q ss_pred             EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCCh-hHHHHHHHHHhccCcc
Q 006868            9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPD-SMKVFWRFLLQKSLSK   87 (628)
Q Consensus         9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~-~~~~F~~~L~~~~~~~   87 (628)
                      |+|+|+|+||||+++|+.|++.+.+.|++++++++++.+..++.+++.+||++|||+.|.+|+ +++.|+++|...    
T Consensus         1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~----   76 (138)
T 5nul_A            1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK----   76 (138)
T ss_dssp             CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG----
T ss_pred             CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh----
Confidence            589999999999999999999999999999999999998888999999999999998888887 999999998542    


Q ss_pred             cccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHH
Q 006868           88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW  153 (628)
Q Consensus        88 ~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~  153 (628)
                        ++|+++++||+++..|   |.+.+.+++.|+++|++.+.+...++..+++.. +.+++|.+++.
T Consensus        77 --l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d-~~~~~~~~~l~  136 (138)
T 5nul_A           77 --ISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVVVETPLIVQNEPDEAE-QDCIEFGKKIA  136 (138)
T ss_dssp             --CTTCEEEEEEEESSSC---SHHHHHHHHHHHHTTCEECSCCEEEESSCGGGH-HHHHHHHHHHH
T ss_pred             --cCCCEEEEEEecCCCC---ChHHHHHHHHHHHCCCEEECCceEEecCCCHHH-HHHHHHHHHHh
Confidence              7899999999865543   788999999999999999988888888766555 77777777654

>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*

Probab=99.83  E-value=1.2e-20  Score=178.73  Aligned_cols=143  Identities=23%  Similarity=0.324  Sum_probs=121.7

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS   86 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~   86 (628)
                      |+++|+|+|+||||+++|+.|++.+.+.  .++++++++++..++.+++.|||++|||+.|.+|+++..|+++|...   
T Consensus         2 mkilIiY~S~tGnT~~vA~~ia~~l~~~--~v~~~~~~~~~~~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~---   76 (169)
T 1obo_A            2 KKIGLFYGTQTGKTESVAEIIRDEFGND--VVTLHDVSQAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDV---   76 (169)
T ss_dssp             CSEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEETTTCCGGGGGGCSEEEEEEEEETTTEECHHHHHHHTTGGGC---
T ss_pred             CeEEEEEECCCchHHHHHHHHHHHhCcC--CcEEEEcccCCHHHHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhhc---
Confidence            6799999999999999999999999754  68899999988888999999999999999999999999999987543   


Q ss_pred             ccccCCcEEEEEecCCc-Chh-HHHHHHHHHHHHHHhcCCeEeecc-------------------ee-eeCC-CCCCchh
Q 006868           87 KQWLEGVRYAVFGLGDS-GYQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQ-HPSGYEG  143 (628)
Q Consensus        87 ~~~l~~~~~aVfGlGds-~y~-~f~~a~~~l~~~L~~lGa~~v~~~-------------------~~-~d~~-~~~g~~~  143 (628)
                        .++|+++++||+|++ .|+ +||.+.+.+++.|+++|++.+...                   +. .+.. .++..++
T Consensus        77 --~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~  154 (169)
T 1obo_A           77 --DFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDD  154 (169)
T ss_dssp             --CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTTCGGGHHH
T ss_pred             --CcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcCCceeeEEeeCCCccccCHH
Confidence              278999999999998 598 799999999999999999988641                   11 2221 1223678


Q ss_pred             hHHHHHHHHHHHH
Q 006868          144 ALDPWMRSLWRRL  156 (628)
Q Consensus       144 ~~~~W~~~l~~~l  156 (628)
                      .+++|.+++++.|
T Consensus       155 ~~~~w~~~~~~~l  167 (169)
T 1obo_A          155 RIKSWVAQLKSEF  167 (169)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            8999999998877

>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*

Probab=99.82  E-value=1.3e-20  Score=178.54  Aligned_cols=144  Identities=25%  Similarity=0.338  Sum_probs=122.1

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS   86 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~   86 (628)
                      |+++|+|+|+||||+++|+.|++.+... +.+++.++++++..++.+++.+||++|||+.|.+|++++.|+++|...   
T Consensus         1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l~~~---   76 (169)
T 1czn_A            1 AKIGLFYGTQTGVTQTIAESIQQEFGGE-SIVDLNDIANADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDSV---   76 (169)
T ss_dssp             CCEEEEECCSSSHHHHHHHHHHHHHTST-TTEEEEEGGGCCGGGGGGCSEEEEECCEETTTEECHHHHHHGGGGGGS---
T ss_pred             CeEEEEEECCCcHHHHHHHHHHHHhCcc-cceEEEEhhhCCHhHHhhCCEEEEEecccCCCcCCHHHHHHHHHhhhh---
Confidence            5799999999999999999999999765 678999999888888889999999999998899999999999988543   


Q ss_pred             ccccCCcEEEEEecCCcC-hh-HHHHHHHHHHHHHHhcCCeEeecc-------------------ee-eeCC-CCCCchh
Q 006868           87 KQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQ-HPSGYEG  143 (628)
Q Consensus        87 ~~~l~~~~~aVfGlGds~-y~-~f~~a~~~l~~~L~~lGa~~v~~~-------------------~~-~d~~-~~~g~~~  143 (628)
                        .++|+++++||+|++. |+ +||.+.+.+++.|+++|++.+...                   +. +|.. .++..++
T Consensus        77 --~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~gl~~~~~~~~~~~~~  154 (169)
T 1czn_A           77 --NFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDEDNQPDLTKN  154 (169)
T ss_dssp             --CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTTCGGGHHH
T ss_pred             --ccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeCCeeeeeeecCCCccccCHH
Confidence              2889999999999995 98 799999999999999999988521                   11 2322 1223688


Q ss_pred             hHHHHHHHHHHHH
Q 006868          144 ALDPWMRSLWRRL  156 (628)
Q Consensus       144 ~~~~W~~~l~~~l  156 (628)
                      .+++|.+++++.|
T Consensus       155 ~~~~w~~~~~~~~  167 (169)
T 1czn_A          155 RIKTWVSQLKSEF  167 (169)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            8999999998766

>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*

Probab=99.82  E-value=1.1e-20  Score=180.24  Aligned_cols=144  Identities=22%  Similarity=0.296  Sum_probs=119.8

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS   86 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~   86 (628)
                      |+++|+|+|+||||+++|+.|++.+...  .+++.++++.+..++.+++.|||++|||+.|.+|+++..|+++|....  
T Consensus         1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~--~v~i~~~~~~~~~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~~~--   76 (175)
T 1ag9_A            1 AITGIFFGSDTGNTENIAKMIQKQLGKD--VADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEID--   76 (175)
T ss_dssp             CCEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEEGGGCCHHHHHTCSEEEEECCEETTTEECHHHHHHHHHHTTCC--
T ss_pred             CEEEEEEECCCchHHHHHHHHHHHhccC--ceEEEEcccCChhHhhhCCEEEEEEeecCCCcChHHHHHHHhhhhhcc--
Confidence            5799999999999999999999999754  578889888777778899999999999989999999999999986432  


Q ss_pred             ccccCCcEEEEEecCCcC-hh-HHHHHHHHHHHHHHhcCCeEeecc--------------------ee-eeCCCC-CCch
Q 006868           87 KQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER--------------------GL-GDDQHP-SGYE  142 (628)
Q Consensus        87 ~~~l~~~~~aVfGlGds~-y~-~f~~a~~~l~~~L~~lGa~~v~~~--------------------~~-~d~~~~-~g~~  142 (628)
                         ++|+++++||+||+. |+ +||.+.+.+++.|++.|++.+...                    +. .|..+. +..+
T Consensus        77 ---l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~~~~~~~~~  153 (175)
T 1ag9_A           77 ---FNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTA  153 (175)
T ss_dssp             ---CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECTTTCHHHHH
T ss_pred             ---cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCCCCcccccH
Confidence               889999999999985 84 899999999999999999988641                    11 222111 1246


Q ss_pred             hhHHHHHHHHHHHHH
Q 006868          143 GALDPWMRSLWRRLH  157 (628)
Q Consensus       143 ~~~~~W~~~l~~~l~  157 (628)
                      +.+++|.++|++.+.
T Consensus       154 ~~i~~w~~~i~~~~~  168 (175)
T 1ag9_A          154 ERVEKWVKQISEELH  168 (175)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            788899999998874

>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}

Probab=99.79  E-value=1.2e-19  Score=170.76  Aligned_cols=141  Identities=15%  Similarity=0.109  Sum_probs=120.9

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC----CCCCeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ   82 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~   82 (628)
                      |+++|+|+|+||||+++|+.|++.+.+.|++++++++.+.+..++    .+++.+||++|||+ |.+|.  ..|++.|..
T Consensus         1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~-g~~p~--~~fl~~l~~   77 (161)
T 3hly_A            1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQ-PSEAV--ATALSTIFA   77 (161)
T ss_dssp             -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSS-CCHHH--HHHHHHHHH
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCcC-CchhH--HHHHHHHHh
Confidence            579999999999999999999999999999999999998876655    37999999999995 77764  889988865


Q ss_pred             ccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhh
Q 006868           83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI  159 (628)
Q Consensus        83 ~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~  159 (628)
                      ..     ++|+++++||+    |+|+|.+.+.+++.|+++|++.+.+...+...+++...+.+++|.+++.+.|.+.
T Consensus        78 ~~-----l~gk~v~~fgs----~g~~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~l~~~  145 (161)
T 3hly_A           78 AA-----HNKQAIGLFDS----YGGDDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLGQWLTRA  145 (161)
T ss_dssp             HC-----CTTSEEEEECC----CCSSBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hh-----hCCCEEEEEEc----CCCCcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            43     78999999995    5667889999999999999999988777777766656788889999999988653

>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A

Probab=99.78  E-value=8.2e-20  Score=171.46  Aligned_cols=141  Identities=13%  Similarity=0.050  Sum_probs=122.0

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC-CccCC----CCCCeEEEEEecCCCCCCChhHHHHHHHH
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFL   80 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~-~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~~~L   80 (628)
                      +++|+|+|+|+||||+++|+.|++.+.+.|++++++++.+. +.+++    .+++.|||++|||+ |.+|  +..|++.|
T Consensus         4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~-g~~p--~~~~l~~l   80 (159)
T 3fni_A            4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAA-SAAS--IQGALSTI   80 (159)
T ss_dssp             CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTT-SHHH--HHHHHHHH
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCC-CCcc--HHHHHHHH
Confidence            56899999999999999999999999999999999999987 65543    46899999999996 8766  48899888


Q ss_pred             HhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHh
Q 006868           81 LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ  158 (628)
Q Consensus        81 ~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~  158 (628)
                      ....     ++|+.+++||+    |+|+|.+.+.+.+.|+++|++.+.+...++..+++...+.+++|.++|.+.+..
T Consensus        81 ~~~~-----~~~k~va~fgs----~g~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~~~~  149 (159)
T 3fni_A           81 LGSV-----NEKQAVGIFET----GGGDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLGQWVTR  149 (159)
T ss_dssp             HHHC-----CTTSEEEEECC----SSSCBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhhc-----ccCCEEEEEEc----CCCCcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence            6543     68999999994    567888899999999999999998888888877766778888999999988854

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=99.75  E-value=3.1e-19  Score=180.41  Aligned_cols=166  Identities=11%  Similarity=0.058  Sum_probs=121.4

Q ss_pred             CCCHHHHHHhcCC----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCccc-ccccHHhhCcCCCCCceEEEEeecC
Q 006868          390 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLAGLDPQQGIYIPAWFQKG  464 (628)
Q Consensus       390 ~~p~~~l~~~lp~----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~-G~~S~~L~~l~~~~G~~v~i~~~~g  464 (628)
                      ..|+||+...+|.    ...|+|||+|.+  . +.++|.|.+         ... |.+|+||+++++  ||+|.+.+|.|
T Consensus        39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~--~-~~~~i~~~~---------~~~~G~~S~~l~~l~~--Gd~l~v~gP~G  104 (252)
T 2gpj_A           39 DQESAYIKLLFPQAGERPLMRTYTIRQQR--D-DEIDVDFVL---------HDTDGPASSWAKTAQV--GELIQIGGPGL  104 (252)
T ss_dssp             CCTTCEEEEEECCTTSCCEEEEEECCEEE--T-TEEEEEEEC---------CSSCCHHHHHHHHCCT--TCEEEEEEEEC
T ss_pred             CCCCCeEEEEcccCCCCCCCCceeeeccC--C-CEEEEEEEE---------eCCCCcHHHHHhhCCC--CCEEEEecCCC
Confidence            3689998888874    467999999987  2 677777733         223 899999999999  99999999999


Q ss_pred             CCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006868          465 SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  544 (628)
Q Consensus       465 ~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~  544 (628)
                      .|.++....+++|||+|||||||++++++...   .   .++++|+++|+.+|.++   |   ... ..+      +++.
T Consensus       105 ~f~l~~~~~~~lliagGtGitPi~s~l~~l~~---~---~~~~~~~~~~~~~d~~~---l---~~~-~~~------~v~~  165 (252)
T 2gpj_A          105 KKLINFEADWFLLAGDMTALPAISVNLAKLPN---N---AVGYAVIEVLSEADIQP---L---VHP-EHV------ELHW  165 (252)
T ss_dssp             CCCCCSSSSEEEEEEEGGGHHHHHHHHHHSCT---T---CEEEEEEEESSGGGCCC---C---CCC-TEE------EEEE
T ss_pred             CCcCCCCCceEEEEcchhhHHHHHHHHHhCCC---C---CcEEEEEEECCHHHhhc---c---cCC-CCc------EEEE
Confidence            99988445799999999999999999998733   1   56789999999877553   1   111 334      6666


Q ss_pred             EEecCCCC-ccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHH
Q 006868          545 AFSRKQPQ-KVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFE  595 (628)
Q Consensus       545 a~Sr~~~~-k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~  595 (628)
                      +++.+... ...+.+.+.+.      .+ ..+..+|+|||+ .|++.+++.|.
T Consensus       166 ~~~~~~~~~g~~~~~~l~~~------~~~~~~~~vy~CGP~-~m~~av~~~l~  211 (252)
T 2gpj_A          166 VINPEADPEGRPLVERIAQL------PWLAGEPAVWIACEF-NSMRALRRHFK  211 (252)
T ss_dssp             EECSSCCTTCHHHHHHHTTS------CCCSSCEEEEEEEEH-HHHHHHHHHHH
T ss_pred             EeCCCCCcccHHHHHHHHhc------cCCCCCcEEEEEcCH-HHHHHHHHHHH
Confidence            66554321 22333333221      01 125689999998 99999988886

>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1

Probab=99.74  E-value=9.8e-18  Score=152.55  Aligned_cols=132  Identities=20%  Similarity=0.237  Sum_probs=113.9

Q ss_pred             EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCCh-hHHHHHHHHHhccCcc
Q 006868            9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPD-SMKVFWRFLLQKSLSK   87 (628)
Q Consensus         9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~-~~~~F~~~L~~~~~~~   87 (628)
                      ++|+|+|.||||+++|+.|++.+.+.|++++++++++.+..++.++|.+||++|||+.|.+|+ +++.|++++..     
T Consensus         2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~-----   76 (137)
T 2fz5_A            2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-----   76 (137)
T ss_dssp             EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-----
T ss_pred             EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-----
Confidence            789999999999999999999999999999999999988778889999999999998777777 49999999853     


Q ss_pred             cccCCcEEEEEecCCcChhH-HHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHH
Q 006868           88 QWLEGVRYAVFGLGDSGYQK-FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW  153 (628)
Q Consensus        88 ~~l~~~~~aVfGlGds~y~~-f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~  153 (628)
                       .++|+++++||+    |++ ||.+.+.+++.|+.+|++.+ +...++...++  .+.+++|.+++.
T Consensus        77 -~l~~k~~~~~~t----~g~~~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~~--~~~~~~~~~~l~  135 (137)
T 2fz5_A           77 -KLKGKKVGLFGS----YGWGSGEWMDAWKQRTEDTGATVI-GTAIVNEMPDN--APECKELGEAAA  135 (137)
T ss_dssp             -GCSSCEEEEEEE----ESSCCSHHHHHHHHHHHHTTCEEE-EEEEEESSSSS--CTHHHHHHHHHH
T ss_pred             -hcCCCEEEEEEe----cCCCCchHHHHHHHHHHHCCCEEc-CcEEEeeCCCh--HHHHHHHHHHHh
Confidence             278999999996    333 78899999999999999988 66677665443  778888888765

>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*

Probab=99.74  E-value=2.8e-18  Score=152.96  Aligned_cols=116  Identities=17%  Similarity=0.229  Sum_probs=90.0

Q ss_pred             EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCccc
Q 006868            9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQ   88 (628)
Q Consensus         9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~   88 (628)
                      ++|+|+|+||||+++|+.|+  +.  |  +   ++++   ..+ .++.+||++||||+|++|+++..|++.         
T Consensus         1 ~~I~Y~S~tGnT~~~A~~ia--~~--~--~---~i~~---~~~-~~~~ii~g~pt~~~g~~p~~~~~fl~~---------   58 (119)
T 2xod_A            1 MLVAYDSMTGNVKRFIHKLN--MP--A--V---QIGE---DLV-IDEDFILITYTTGFGNVPERVLEFLER---------   58 (119)
T ss_dssp             CEEEECCSSSHHHHHHHHHT--SC--E--E---ECCT---TCC-CCSCEEEEECCBTTTBCCHHHHHHHHH---------
T ss_pred             CEEEEECCChhHHHHHHHhc--cc--C--C---CcCc---ccc-cCCCEEEEEeecCCCcCCHHHHHHHHH---------
Confidence            47999999999999999999  32  3  2   3333   233 589999999999999999999999865         


Q ss_pred             ccCCcEEEEEecCCcChhH-HHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHH
Q 006868           89 WLEGVRYAVFGLGDSGYQK-FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW  153 (628)
Q Consensus        89 ~l~~~~~aVfGlGds~y~~-f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~  153 (628)
                       +++++++|||+||++|++ ||.+++.++++|..   ..   ...++..+++...+.+++|.++++
T Consensus        59 -~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~~---~~---~~~~~~~~~~~d~~~~~~~~~~i~  117 (119)
T 2xod_A           59 -NNEKLKGVSASGNRNWGDMFGASADKISAKYEV---PI---VSKFELSGTNNDVEYFKERVREIA  117 (119)
T ss_dssp             -HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CE---EEEEETTCCHHHHHHHHHHHHHHT
T ss_pred             -cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhCC---cc---EEEEecCCCHHHHHHHHHHHHHhc
Confidence             457899999999999997 99999999999743   22   233443333335567889988875

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}

Probab=99.69  E-value=1e-17  Score=156.97  Aligned_cols=125  Identities=10%  Similarity=0.006  Sum_probs=84.6

Q ss_pred             cCCCCCce-EEEEeecCCCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHh
Q 006868          449 LDPQQGIY-IPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH  527 (628)
Q Consensus       449 l~~~~G~~-v~i~~~~g~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~  527 (628)
                      |++  ||+ |.+.+|.|+|...+..+|++|||+||||||+++++++....+     .+++|+ |+|+++|.+|.+||+++
T Consensus         1 L~~--Gd~vl~v~gP~G~~f~~~~~~~~llIaGG~GItPl~sm~~~l~~~~-----~~v~l~-g~r~~~d~~~~~el~~l   72 (158)
T 3lrx_A            1 MKE--GDSLLNVAGPLGTPVPMEKFGKILAIGAYTGIVEVYPIAKAWQEIG-----NDVTTL-HVTFEPMVILKEELEKA   72 (158)
T ss_dssp             -------------CCCCCCBCCCCCSEEEEEEETTHHHHHHHHHHHHHHHT-----CEEEEE-EECBGGGCCSHHHHHHH
T ss_pred             CcC--CCEeeEEECCCCCCCccCCCCeEEEEEccCcHHHHHHHHHHHHhcC-----CcEEEE-EeCCHHHhhHHHHHHHH
Confidence            456  999 599999998654445689999999999999999999987654     579999 99999999999999987


Q ss_pred             HhcCCCcccCCCCcEEEEEecCC--------CCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          528 SLNDGVFSEAKGGGFYVAFSRKQ--------PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       528 ~~~~g~l~~~~~~~~~~a~Sr~~--------~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ..+   +      .+..++++..        ..+++|++.+.+....     .+...||+|||+ .|.+.+.+.|.+
T Consensus        73 ~~~---~------~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~l~~-----~~~~~vy~CGP~-~mm~~v~~~l~~  134 (158)
T 3lrx_A           73 VTR---H------IVEPVPLNPNQDFLANMKNVSQRLKEKVRELLES-----EDWDLVFMVGPV-GDQKQVFEVVKE  134 (158)
T ss_dssp             SSE---E------EECCBCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-----SCCSEEEEESCH-HHHHHHHHHHGG
T ss_pred             Hhc---e------EEEEeeccccccCCCCCCCCcccccHHHHHhhcc-----CCCCEEEEECCH-HHHHHHHHHHHH
Confidence            643   2      2222233211        1256777655443211     246789999998 999988877654

>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7

Probab=99.66  E-value=6.2e-17  Score=147.85  Aligned_cols=123  Identities=17%  Similarity=0.200  Sum_probs=92.3

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL   85 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~   85 (628)
                      .|++.|+|+|.||||+++|++|+..+        .+++.+    .+..++.+|+++||||.|++|+++.+|++.      
T Consensus         8 ~m~i~I~Y~S~TGNt~~vA~~l~~~~--------~~~i~~----~~~~~~~~ilv~pTyG~G~~P~~v~~Fl~~------   69 (139)
T 1rlj_A            8 NAMVQIIFDSKTGNVQRFVNKTGFQQ--------IRKVDE----MDHVDTPFVLVTYTTNFGQVPASTQSFLEK------   69 (139)
T ss_dssp             HSCCEEEECCSSSHHHHHHTTSCCSE--------EEETTS----CSCCCSCEEEEECCBGGGBCCHHHHHHHHH------
T ss_pred             CCEEEEEEECCChhHHHHHHHhcccc--------ceEecc----ccccCCCEEEEEcCcCCCcCcHHHHHHHHh------
Confidence            45689999999999999999997421        234433    356678899999999999999999999853      


Q ss_pred             cccccCCcEEEEEecCCcChh-HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868           86 SKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                          ..++.|+|+|+||++|+ .||.+++.+++++   |...+. ..+.+  ....+.+.+.+|++++|.+-
T Consensus        70 ----~~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~~-~~el~--g~~~D~~~~~~~~~~~~~~~  131 (139)
T 1rlj_A           70 ----YAHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILH-KFELS--GTSKDVELFTQEVERVVTKS  131 (139)
T ss_dssp             ----HGGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEE-EEETT--CCHHHHHHHHHHHHHHHHHH
T ss_pred             ----CCCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCcc-eEEEc--CCHHHHHHHHHHHHHHHHHh
Confidence                13478999999999995 7999999988776   444332 22332  22225677889999988643

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=99.64  E-value=2.1e-16  Score=145.30  Aligned_cols=120  Identities=10%  Similarity=-0.004  Sum_probs=86.0

Q ss_pred             EEEEeecCCCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCccc
Q 006868          457 IPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSE  536 (628)
Q Consensus       457 v~i~~~~g~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~  536 (628)
                      +.+.+|.|+|...+..++++|||+||||||+++++++....+     .+++++ |+|+++|++|.+||+++.++   +  
T Consensus         3 ~~v~GP~G~~~~~~~~~~~llIaGG~GiaPl~sm~~~l~~~~-----~~v~l~-g~R~~~~~~~~~el~~l~~~---~--   71 (142)
T 3lyu_A            3 LNVAGPLGTPVPMEKFGKILAIGAYTGIVEVYPIAKAWQEIG-----NDVTTL-HVTFEPMVILKEELEKAVTR---H--   71 (142)
T ss_dssp             ----CCCSCCBCCCCCSEEEEEEETTHHHHHHHHHHHHHHTT-----CEEEEE-EEEEGGGCCSHHHHHTTSSE---E--
T ss_pred             eeeeCCCCCCccCCCCCeEEEEECcCcHHHHHHHHHHHHhcC-----CcEEEE-EeCCHHHhhHHHHHHHHHhh---e--
Confidence            468899998765544689999999999999999999987654     578999 99999999999999987654   2  


Q ss_pred             CCCCcEEEEEecCCC--------CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          537 AKGGGFYVAFSRKQP--------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       537 ~~~~~~~~a~Sr~~~--------~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                          .+..++++...        .+++|++.+.+....     .+...||+|||+ .|.+.|.+.+.+.
T Consensus        72 ----~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~~~~-----~~~~~vy~CGP~-~Mm~av~~~l~~~  130 (142)
T 3lyu_A           72 ----IVEPVPLNPNQDFLANMKNVSQRLKEKVRELLES-----EDWDLVFMVGPV-GDQKQVFEVVKEY  130 (142)
T ss_dssp             ----EEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHS-----SCCSEEEEESCH-HHHHHHHHHHHHH
T ss_pred             ----EEEEeecccccCCCCCCCCCccchhHHHHHhccc-----CCCCEEEEECCH-HHHHHHHHHHHHc
Confidence                33334443211        256676655443111     235689999998 9999888777653

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}

Probab=99.62  E-value=1e-16  Score=153.43  Aligned_cols=133  Identities=14%  Similarity=0.228  Sum_probs=91.4

Q ss_pred             EEEeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcC----CCCCCCeEEEEcCCCCCccc-cHHHHHHhHhcC
Q 006868          458 PAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS----SGPAAPIIFFFGCRNEDDFL-YRELWLSHSLND  531 (628)
Q Consensus       458 ~i~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~----~~~~~~~~L~~G~R~~~d~l-y~~el~~~~~~~  531 (628)
                      .+.+|.|.|.++ ....|+||||+|||||||+++++++.....    .....+++|+||+|+.++++ |.+||+++.+.+
T Consensus         2 ~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~~   81 (186)
T 3a1f_A            2 AVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQM   81 (186)
T ss_dssp             CTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHHH
T ss_pred             eEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHHH
Confidence            456788988765 566899999999999999999999876520    00137899999999999988 999999998752


Q ss_pred             ------CCcccCCCCcEEEEEecCCC---Cccchhh-----hHH----------HcHHH----HHHHHh-CCCEEEEeCC
Q 006868          532 ------GVFSEAKGGGFYVAFSRKQP---QKVYVQH-----KML----------EQSQR----IWNLLL-SKASIYVAGS  582 (628)
Q Consensus       532 ------g~l~~~~~~~~~~a~Sr~~~---~k~yVqd-----~l~----------~~~~~----v~~~l~-~~~~iyvCG~  582 (628)
                            +++      ++++++|++..   .+.|++.     .+.          -+.+.    +..... .+..||+|||
T Consensus        82 ~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP  155 (186)
T 3a1f_A           82 QERNNAGFL------SYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP  155 (186)
T ss_dssp             HHTTCTTSE------EEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC
T ss_pred             hhccCCCeE------EEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC
Confidence                  356      78889998532   1223321     000          00111    111122 3678999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 006868          583 ATKMPSDVWSTFEEI  597 (628)
Q Consensus       583 ~~~M~~~v~~~L~~i  597 (628)
                      + .|.++|+++|.+.
T Consensus       156 ~-~m~~~v~~~l~~~  169 (186)
T 3a1f_A          156 E-ALAETLSKQSISN  169 (186)
T ss_dssp             H-HHHHHHHHHHHHT
T ss_pred             H-HHHHHHHHHHHHh
Confidence            8 9999999888764

>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*

Probab=99.55  E-value=2e-14  Score=139.28  Aligned_cols=124  Identities=22%  Similarity=0.141  Sum_probs=103.2

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC-------------------CccCCCCCCeEEEEEecCC
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-------------------DARCLPEEDTVIFVVSTTG   65 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~-------------------~~~~l~~~~~vi~~~sT~g   65 (628)
                      .||+|+|+|+|.+|||+++|+.+++.+.+.|++++++++.+.                   ...++.++|.|||++|+| 
T Consensus         4 ~M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-   82 (200)
T 2a5l_A            4 SSPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR-   82 (200)
T ss_dssp             -CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECB-
T ss_pred             CcceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChh-
Confidence            478999999999999999999999999999999999999872                   233456899999999999 


Q ss_pred             CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc
Q 006868           66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER  130 (628)
Q Consensus        66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~  130 (628)
                      .|.+|..++.|++++.... ....++|+++++|+.+...+..++.+.+.+.+.|..+|+..+.+.
T Consensus        83 ~~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~~  146 (200)
T 2a5l_A           83 FGNMASPLKYFLDGTSSLW-LTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIP  146 (200)
T ss_dssp             TTBCCHHHHHHHHTCHHHH-HHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCCC
T ss_pred             ccCccHHHHHHHHHHHHHh-hccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECCC
Confidence            7999999999999875421 112378999999999877666667788999999999999987543

>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*

Probab=99.55  E-value=9.9e-15  Score=157.06  Aligned_cols=139  Identities=17%  Similarity=0.159  Sum_probs=110.9

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC---c----cCCCCCCeEEEEEecCCCCCCChhHHHHH
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD---A----RCLPEEDTVIFVVSTTGQGDTPDSMKVFW   77 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~---~----~~l~~~~~vi~~~sT~g~G~~p~~~~~F~   77 (628)
                      +.++|+|+|+|++|||+++|+.|++.+.+.|+++.++.+.+.+   .    .++.+++.+||++||| +|++++.+..|+
T Consensus       264 ~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~-~~~~~p~~~~~l  342 (410)
T 4dik_A          264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTY-EAEIHPLMRFTL  342 (410)
T ss_dssp             CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCT-TSSSCHHHHHHH
T ss_pred             cccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCc-CCcCCHHHHHHH
Confidence            3568999999999999999999999999999987766554433   2    3466899999999999 688889999999


Q ss_pred             HHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868           78 RFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus        78 ~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                      ..+....     ++|+.+++||    +|+|.+.+.+.+.++|+++|++.+.+ ..+.....  .++.+++-.+.+.+.|
T Consensus       343 ~~l~~~~-----~~~K~~~~FG----SyGWsg~a~~~~~~~l~~~~~~~v~~-~~~~~~~~--de~~lee~~~~~~~~l  409 (410)
T 4dik_A          343 LEIIDKA-----NYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSF-TEIKGSNM--DERKIEEAISLLKKEL  409 (410)
T ss_dssp             HHHHHHC-----CCCCEEEEEE----ECCCCCTTSCCHHHHHTTSSCEEEEE-EEECSTTC--CHHHHHHHHHHHHHHH
T ss_pred             HHHHhcc-----cCCCEEEEEE----CCCCCcHHHHHHHHHHHHCCCEEECc-EEEECCCC--CHHHHHHHHHHHHHhh
Confidence            9887654     6799999999    68899999999999999999998765 44444433  3556666555544443

>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8

Probab=99.54  E-value=3.1e-14  Score=137.04  Aligned_cols=152  Identities=18%  Similarity=0.162  Sum_probs=118.0

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHh-CCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhc
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESER-RGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK   83 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~-~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~   83 (628)
                      .||+|+|+|+|.||||+++|+.|++.+.+ .|++++++++.+.+..++.++|.|||++||| .|.+|+.++.|++++...
T Consensus         3 ~M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~aD~ii~gsP~y-~g~~~~~lk~fld~~~~~   81 (188)
T 2ark_A            3 AMGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTN-MGLVSWKMKRFFDDVLGD   81 (188)
T ss_dssp             CCEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHTGGG
T ss_pred             CCCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhCCEEEEEeCcc-CCcCCHHHHHHHHHHhhh
Confidence            57899999999999999999999999998 8999999999998877888999999999999 899999999999998541


Q ss_pred             cCcccccCCcEEEEEec-CCcChhHHHHHHHHHHHHHHhcCCeEeec------cee------eeCCCC-CCchhhHHHHH
Q 006868           84 SLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVE------RGL------GDDQHP-SGYEGALDPWM  149 (628)
Q Consensus        84 ~~~~~~l~~~~~aVfGl-Gds~y~~f~~a~~~l~~~L~~lGa~~v~~------~~~------~d~~~~-~g~~~~~~~W~  149 (628)
                      ..  ..++|+++++||+ |+.. +.+..+.+.+.+.|..+|+..+..      ...      .....+ +...+.+..|.
T Consensus        82 ~~--~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~g  158 (188)
T 2ark_A           82 LW--GEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSEEEKEACRRLG  158 (188)
T ss_dssp             TT--TSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESSCCSHHHHHHHHHHH
T ss_pred             hH--HHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCccccccccCCCcceeecCCCcHHHHHHHHHHH
Confidence            10  2378999999998 5432 224566778888888899876531      111      112222 22456777899


Q ss_pred             HHHHHHHHhhC
Q 006868          150 RSLWRRLHQID  160 (628)
Q Consensus       150 ~~l~~~l~~~~  160 (628)
                      +++.+.+....
T Consensus       159 ~~la~~~~~~~  169 (188)
T 2ark_A          159 RRLAEWVAIFV  169 (188)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99888886543

>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*

Probab=99.54  E-value=2e-14  Score=131.15  Aligned_cols=126  Identities=14%  Similarity=0.238  Sum_probs=90.8

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCC----CCCCChhHHHHHHHHH
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTG----QGDTPDSMKVFWRFLL   81 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g----~G~~p~~~~~F~~~L~   81 (628)
                      ||..+|+|+|.||||++++++|..       +..-+++.+  ..++..++.+|+++||||    .|+.|+.+.+|++.+.
T Consensus        20 ~~~~ivYfsS~TGNT~rFv~kL~~-------~~~~I~~~~--~~~~~~~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~   90 (153)
T 3n3a_C           20 HMSQLVYFSSSSENTQRFIERLGL-------PAVRIPLNE--RERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEH   90 (153)
T ss_dssp             ---CEEECCCTTCHHHHHHHHHCS-------CCEECCSST--TCCCCCCSCEEEEEECCTTSSSSSSSCHHHHHHHTSHH
T ss_pred             cceeEEEEECCCcCHHHHHHHhCC-------ccccccccc--CcccccCCCEEEEEeccCCCCcCCcCcHHHHHHHhhhc
Confidence            455578999999999999999843       222223332  234556778999999998    5999999999997653


Q ss_pred             hccCcccccCCcEEEEEecCCcCh-hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHH
Q 006868           82 QKSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR  154 (628)
Q Consensus        82 ~~~~~~~~l~~~~~aVfGlGds~y-~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~  154 (628)
                      +        .++.++|+|+||++| ..||.|++.+.+++..   ..+   ..++-..++.+.+.+.+|++++|+
T Consensus        91 n--------~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~v---P~l---~kfEL~Gt~eDv~~v~~~~~~~~~  150 (153)
T 3n3a_C           91 N--------RALLRGVIASGNRNFGEAYGRAGDVIARKCGV---PWL---YRFELMGTQSDIENVRKGVTEFWQ  150 (153)
T ss_dssp             H--------HHHEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEE---EEEETTCCHHHHHHHHHHHHHHHH
T ss_pred             c--------cCcEEEEEecCCCchhHHHHHHHHHHHHHhCC---CeE---EEEeCCCCHHHHHHHHHHHHHHHh
Confidence            2        256899999999999 5899999999999862   211   344444433356677777777775

>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3

Probab=99.52  E-value=3e-14  Score=153.16  Aligned_cols=143  Identities=15%  Similarity=0.113  Sum_probs=120.1

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC----CCCCeEEEEEecCCCCCCChhHHHHHHHHH
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLL   81 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~   81 (628)
                      +++++|+|+|+||||+++|+.|++.+.+.|+.++++++++.+..++    .+++.+||++|||+. ..|+.++.|++++.
T Consensus       252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~~~-~~~~~~~~~l~~l~  330 (402)
T 1e5d_A          252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNN-GILPYVAGTLQYIK  330 (402)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBTT-BCCHHHHHHHHHHH
T ss_pred             CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCC-CchHHHHHHHHHhh
Confidence            5899999999999999999999999999999999999998775553    689999999999954 45667999999986


Q ss_pred             hccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHh
Q 006868           82 QKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ  158 (628)
Q Consensus        82 ~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~  158 (628)
                      ...     ++|+.+++||.    |+++|.+.+.+.+.|..+|++.+.+...++...++...+.+.+|.+++.+.+++
T Consensus       331 ~~~-----l~~k~~~~f~t----~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~  398 (402)
T 1e5d_A          331 GLR-----PQNKIGGAFGS----FGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALKA  398 (402)
T ss_dssp             HTC-----CCSCEEEEEEE----ESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcc-----cCCCEEEEEEc----CCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHhh
Confidence            543     78999999995    667899999999999999999987666676654444566778898888887754

>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*

Probab=99.50  E-value=1.9e-14  Score=154.57  Aligned_cols=141  Identities=16%  Similarity=0.045  Sum_probs=115.7

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC----CCCCeEEEEEecCCCCCCChhHHHHHHHHH
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLL   81 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~   81 (628)
                      +++++|+|+|+||||+++|+.+++.+.+.|+.++++++.+.+..++    .+++.+||++|||+ |..|+.++.|++++.
T Consensus       251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~p~y~-~~~~~~~~~~l~~l~  329 (398)
T 1ycg_A          251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTIN-NDILPVVSPLLDDLV  329 (398)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCCBT-TBCCGGGHHHHHHHH
T ss_pred             cCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccC-ccchHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999987765443    58899999999995 555557999999986


Q ss_pred             hccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc-eeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868           82 QKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER-GLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus        82 ~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~-~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                      ...     ++|+.+++||+    |+++|.+.+.+++.|+.+|++.+.+. ..++...++...+.+++|.+++.+.+
T Consensus       330 ~~~-----~~~k~~~~~~s----~g~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~  396 (398)
T 1ycg_A          330 GLR-----PKNKVGLAFGA----YGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARI  396 (398)
T ss_dssp             HHC-----CSSCEEEEEEE----ESSSCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccc-----cCCCEEEEEEe----CCCchHHHHHHHHHHHHCCeEEecCceEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence            543     78999999994    67789999999999999999998765 66665544334566667777776654

>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*

Probab=99.48  E-value=1.4e-13  Score=133.04  Aligned_cols=121  Identities=23%  Similarity=0.243  Sum_probs=99.4

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHh-CCCCcEEeeCCCC-------------------CccCCCCCCeEEEEEecCC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESER-RGCPVVVRPVDDY-------------------DARCLPEEDTVIFVVSTTG   65 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~-~g~~v~~~~l~~~-------------------~~~~l~~~~~vi~~~sT~g   65 (628)
                      ||+|+|+|+|.+|||+++|+.|++.+.+ .|++++++++.+.                   ...++.++|.|||++||| 
T Consensus         1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-   79 (198)
T 3b6i_A            1 MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTR-   79 (198)
T ss_dssp             -CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEE-
T ss_pred             CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeChh-
Confidence            5789999999999999999999999998 8999999999763                   245677899999999999 


Q ss_pred             CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868           66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE  129 (628)
Q Consensus        66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~  129 (628)
                      .|.+|..++.|++++.... ....++|+++++|+.+... +....+.+.+...|..+|+..+.+
T Consensus        80 ~~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~~  141 (198)
T 3b6i_A           80 FGNMSGQMRTFLDQTGGLW-ASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVPI  141 (198)
T ss_dssp             TTEECHHHHHHHTTCHHHH-HHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECCC
T ss_pred             cCCchHHHHHHHHHhhhhh-hhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEECC
Confidence            8999999999999875321 1123789999999987654 445567788888999999987754

>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*

Probab=99.47  E-value=7.8e-14  Score=150.01  Aligned_cols=145  Identities=14%  Similarity=0.091  Sum_probs=118.9

Q ss_pred             cCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc----CCCCCCeEEEEEecCCCCCCChhHHHHHHH
Q 006868            4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR----CLPEEDTVIFVVSTTGQGDTPDSMKVFWRF   79 (628)
Q Consensus         4 ~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~----~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~   79 (628)
                      +++++++|+|+|.||||+++|+.|++.+.+.|++++++++.+.+..    ++.++|.+||++||| .|.+|+.++.|+++
T Consensus       254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y-~~~~~~~~k~~ld~  332 (404)
T 2ohh_A          254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTI-YDEPYPSVGDLLMY  332 (404)
T ss_dssp             CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEE-TTEECTHHHHHHHH
T ss_pred             CCCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccc-cccchHHHHHHHHH
Confidence            4568999999999999999999999999988999999999987754    567899999999999 68888889999999


Q ss_pred             HHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868           80 LLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus        80 L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                      +.......  ++|+++++||+|+..    +.+.+.+.+.|..+|++.+.+ ..++...++...+.+++|.+++.+.+
T Consensus       333 l~~~~~~~--l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (404)
T 2ohh_A          333 LRGLKFNR--TLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVACE-EEVYYVPTGDELDACFEAGRKLAAEI  402 (404)
T ss_dssp             HHHHCGGG--TCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEEEE-EEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccc--cCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEEeE-EEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence            87543222  689999999986543    567889999999999998876 55555443335667778888877655

>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}

Probab=99.46  E-value=1.3e-13  Score=148.99  Aligned_cols=144  Identities=16%  Similarity=0.074  Sum_probs=118.6

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc----CCCCCCeEEEEEecCCCCCCChhHHHHHHHH
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR----CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFL   80 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~----~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L   80 (628)
                      .|++++|+|+|.||||+++|+.|++.+.+.|++++++++.+.+..    ++.++|.|||++||| .|.+|+.++.|++++
T Consensus       255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y-~~~~~~~~k~fld~l  333 (414)
T 2q9u_A          255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTL-NNTMMPSVAAALNYV  333 (414)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCB-TTBCCHHHHHHHHHH
T ss_pred             cCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCcc-CcCchHHHHHHHHHH
Confidence            478999999999999999999999999999999999999887754    577999999999999 778888899999998


Q ss_pred             HhccCccccc-CCcEEEEEecCCcChhHHHHHHHHHHHHHHh-cCCeEeecc-eeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868           81 LQKSLSKQWL-EGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD-LGATAVVER-GLGDDQHPSGYEGALDPWMRSLWRRLH  157 (628)
Q Consensus        81 ~~~~~~~~~l-~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~-lGa~~v~~~-~~~d~~~~~g~~~~~~~W~~~l~~~l~  157 (628)
                      ....     + +|+++++||+|...    +.+.+.+.+.|.. +|++.+.+. ..+....++...+.+.+|.+++.+.+.
T Consensus       334 ~~~~-----~~~~K~~~~~~t~g~~----~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~  404 (414)
T 2q9u_A          334 RGLT-----LIKGKPAFAFGAFGWS----NRAVPDIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAGVDLGKRAI  404 (414)
T ss_dssp             HHHT-----TTTTSBEEEEEEESSS----CCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhhc-----ccCCCEEEEEEecCCC----chhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHHHHHHHHHHHHHHHHHH
Confidence            6543     5 79999999986543    5577899999999 999988754 455554444456777788888877664


Q ss_pred             h
Q 006868          158 Q  158 (628)
Q Consensus       158 ~  158 (628)
                      .
T Consensus       405 ~  405 (414)
T 2q9u_A          405 A  405 (414)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}

Probab=99.43  E-value=6.3e-14  Score=135.51  Aligned_cols=121  Identities=17%  Similarity=0.097  Sum_probs=94.0

Q ss_pred             CCccCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCC---CCc---cCCCCCCeEEEEEecCCCCCCChhHH
Q 006868            1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD---YDA---RCLPEEDTVIFVVSTTGQGDTPDSMK   74 (628)
Q Consensus         1 ~~~~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~---~~~---~~l~~~~~vi~~~sT~g~G~~p~~~~   74 (628)
                      |+...|++|+|+|+|.||||+++|+.|++.+.+.+     +++.+   ++.   .++.++|.|||++||| .|.+|..++
T Consensus         1 ~~~~~~~kiliiy~S~~GnT~~lA~~ia~~l~~~~-----~~v~~~~~~~~~~~~~l~~~D~ii~gsP~y-~g~~~~~~k   74 (193)
T 3d7n_A            1 MTTNSSSNTVVVYHSGYGHTHRMAEAVAEGAEATL-----HAIDAEGNLSEDGWAALDAADAIIFGTPTY-MGGPSWQFK   74 (193)
T ss_dssp             -----CCCEEEEECCSSSHHHHHHHHHHHHHTCEE-----EECCTTSCCCHHHHHHHHHCSEEEEEEEEE-TTEECHHHH
T ss_pred             CCCCCCCEEEEEEECCChHHHHHHHHHHHHhhhcc-----eEeeecCCCCHhHHHHHHHCCEEEEEeCcc-CCCccHHHH
Confidence            78778999999999999999999999999997643     34433   221   4566899999999999 699999999


Q ss_pred             HHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868           75 VFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV  128 (628)
Q Consensus        75 ~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~  128 (628)
                      .|++++...- ....++|+++++|+++...++.+..+...+...|..+|+..+.
T Consensus        75 ~fld~~~~~~-~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~vg  127 (193)
T 3d7n_A           75 KFADASSKPW-FSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVS  127 (193)
T ss_dssp             HHHHHTHHHH-HTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred             HHHHHhhhhc-cccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence            9999875211 0123789999999998777777778889999999999988653

>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}

Probab=99.43  E-value=2.6e-13  Score=131.48  Aligned_cols=151  Identities=14%  Similarity=0.091  Sum_probs=114.2

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC--------------------CccCCCCCCeEEEEEecC
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY--------------------DARCLPEEDTVIFVVSTT   64 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~--------------------~~~~l~~~~~vi~~~sT~   64 (628)
                      .||+|+|+|+| +|||+++|+.+++.+.+.|.+++++++.+.                    ...++.++|.|||++|+|
T Consensus         3 ~mmkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP~y   81 (199)
T 2zki_A            3 CKPNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTR   81 (199)
T ss_dssp             CCCEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECB
T ss_pred             CCcEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHHhCCEEEEECCcc
Confidence            46899999999 999999999999999988999999998875                    122345789999999999


Q ss_pred             CCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeeccee------------
Q 006868           65 GQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL------------  132 (628)
Q Consensus        65 g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~------------  132 (628)
                       .|.+|..++.|++++.... ....++|+++++|+.+...++....+.+.+...|..+|+..+.....            
T Consensus        82 -~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  159 (199)
T 2zki_A           82 -YGNMAGGLKTFLDTTAILW-KDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPIGYGIPELFQTTTGGG  159 (199)
T ss_dssp             -TTBCCHHHHHHHHTTHHHH-HTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCCTTCSTHHHHCSSSCC
T ss_pred             -ccCccHHHHHHHHHhhhcc-cccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCCCcCCccccccccCCC
Confidence             7999999999999874321 11238899999999866554434567889999999999987754321            


Q ss_pred             ------ee--CCCCCCchhhHHHHHHHHHHHHHh
Q 006868          133 ------GD--DQHPSGYEGALDPWMRSLWRRLHQ  158 (628)
Q Consensus       133 ------~d--~~~~~g~~~~~~~W~~~l~~~l~~  158 (628)
                            +.  +..++...+.+..|.+++.+.+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~~~  193 (199)
T 2zki_A          160 PYGATHLGSKEELDEMERKIARFQGKRITEVAKA  193 (199)
T ss_dssp             SSCCCCBSSCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceeeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                  10  022222456677888888877654

>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*

Probab=99.42  E-value=2.8e-13  Score=132.60  Aligned_cols=156  Identities=16%  Similarity=0.119  Sum_probs=116.1

Q ss_pred             CCccCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC--------------------C-----ccCCCCCC
Q 006868            1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY--------------------D-----ARCLPEED   55 (628)
Q Consensus         1 ~~~~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~--------------------~-----~~~l~~~~   55 (628)
                      |.-..||+|+|+|+|.+|||+++|+.|++.+.+.|.+++++++.+.                    +     ..++.++|
T Consensus         1 ~~~~~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD   80 (211)
T 1ydg_A            1 MSLTAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAE   80 (211)
T ss_dssp             ----CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCS
T ss_pred             CCcCCCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCC
Confidence            4545689999999999999999999999999999999999999774                    2     12344789


Q ss_pred             eEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeeccee---
Q 006868           56 TVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL---  132 (628)
Q Consensus        56 ~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~---  132 (628)
                      .|||++|+| .|.+|..++.|++++.... ....++|+++++|+.+...+.....+...+...|..+|+..+.+...   
T Consensus        81 ~ii~gsP~y-~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~  158 (211)
T 1ydg_A           81 AIVFSSPTR-FGGATSQMRAFIDTLGGLW-SSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEV  158 (211)
T ss_dssp             EEEEEEEEE-TTEECHHHHHHHHTTHHHH-HTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCCTTCSHH
T ss_pred             EEEEEcCcc-ccCccHHHHHHHHHhcccc-ccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCCCCCChh
Confidence            999999999 7999999999999875320 11237899999999876655444677889999999999987754211   


Q ss_pred             -------------ee--CCCCCCchhhHHHHHHHHHHHHHh
Q 006868          133 -------------GD--DQHPSGYEGALDPWMRSLWRRLHQ  158 (628)
Q Consensus       133 -------------~d--~~~~~g~~~~~~~W~~~l~~~l~~  158 (628)
                                   +.  ...++...+.+.+|.++|.+.+..
T Consensus       159 ~~~~~~~~~g~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~  199 (211)
T 1ydg_A          159 IFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAK  199 (211)
T ss_dssp             HHHTTCCSSSCEEECCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCCCccceeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                         11  111223456677888888877654

>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}

Probab=99.36  E-value=4.9e-12  Score=119.74  Aligned_cols=126  Identities=21%  Similarity=0.242  Sum_probs=93.3

Q ss_pred             cCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC---C-----------------------------ccCC
Q 006868            4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---D-----------------------------ARCL   51 (628)
Q Consensus         4 ~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~---~-----------------------------~~~l   51 (628)
                      +.+|+++|+|.|.||||+++|+.|++.+..     .++++...   +                             ..++
T Consensus        11 ~~~mkilIvY~S~tGnT~~vA~~Ia~~l~~-----d~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l   85 (171)
T 4ici_A           11 HSNSKILVAYFSATGTTARAAEKLGAAVGG-----DLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENI   85 (171)
T ss_dssp             --CCCEEEEECCSSSHHHHHHHHHHHHHTC-----EEEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTG
T ss_pred             cCCCCEEEEEECCCChHHHHHHHHHHHhCC-----CeEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccH
Confidence            457899999999999999999999999852     34444321   1                             1356


Q ss_pred             CCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecce
Q 006868           52 PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG  131 (628)
Q Consensus        52 ~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~  131 (628)
                      .++|.|||++||| .|.+|+.+..|++.+   .     ++|+++++|+++...  .++.+.+.+.+.|.  |++ +.+..
T Consensus        86 ~~yD~iilg~Pvy-~g~~~~~~~~fl~~~---~-----l~gk~v~~f~t~g~~--~~g~a~~~l~~~l~--~~~-~~~g~  151 (171)
T 4ici_A           86 GTYDVVFIGYPIW-WDLAPRIINTFIEGH---S-----LKGKTVVPFATSGGS--SIGNSATVLKKTYP--DLN-WKEGR  151 (171)
T ss_dssp             GGCSEEEEEEECB-TTBCCHHHHHHHHHS---C-----CTTSEEEEEEECSSC--CSHHHHHHHHHHST--TSE-ECCCE
T ss_pred             hHCCEEEEecccc-cCCchHHHHHHHHHc---C-----CCcCEEEEEEecCCC--CcchHHHHHHHHcC--CCe-eccCe
Confidence            6899999999999 699999999998875   2     789999999974321  24567788887775  555 44555


Q ss_pred             eeeCCCCCCchhhHHHHHHHH
Q 006868          132 LGDDQHPSGYEGALDPWMRSL  152 (628)
Q Consensus       132 ~~d~~~~~g~~~~~~~W~~~l  152 (628)
                      .++..    .+.++..|++++
T Consensus       152 ~~~~~----~~~~i~~Wl~~~  168 (171)
T 4ici_A          152 LLNRT----DEKAIRAWLDVI  168 (171)
T ss_dssp             ECSSC----CHHHHHHHHHHH
T ss_pred             EecCC----CHHHHHHHHHHh
Confidence            55542    467899999875

>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*

Probab=99.31  E-value=1.6e-12  Score=125.94  Aligned_cols=121  Identities=18%  Similarity=0.103  Sum_probs=97.9

Q ss_pred             CCcEEEEEECC--cchHHHHHHHHHHH-HHhCCCCcEEeeCCCCCc-----------------cCCCCCCeEEEEEecCC
Q 006868            6 RNKLLILYASQ--TGNALDAAERIGRE-SERRGCPVVVRPVDDYDA-----------------RCLPEEDTVIFVVSTTG   65 (628)
Q Consensus         6 ~~~v~I~Y~S~--tGnte~~A~~l~~~-l~~~g~~v~~~~l~~~~~-----------------~~l~~~~~vi~~~sT~g   65 (628)
                      ||+|+|+|||.  +|||+++|+.+++. +.+.|.+++++++.+++.                 .++.++|.+||++|+| 
T Consensus         2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y-   80 (197)
T 2vzf_A            2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIY-   80 (197)
T ss_dssp             CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECB-
T ss_pred             CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCcc-
Confidence            57999999997  89999999999999 998899999999987642                 2355899999999999 


Q ss_pred             CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceee
Q 006868           66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLG  133 (628)
Q Consensus        66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~  133 (628)
                      .|.+|..++.|++++...     .++|+++++|+.|... ..++.....+...|..+|++.+.+.+.+
T Consensus        81 ~~~~p~~lK~~ld~l~~~-----~~~gK~~~~~~tgg~~-~~~~a~~~~l~~~l~~~g~~~v~~~v~~  142 (197)
T 2vzf_A           81 KASYTGLLKAFLDILPQF-----ALAGKAALPLATGGSP-AHVLALDYGLRPVLHSMGVRHVVQSFFL  142 (197)
T ss_dssp             TTBCCHHHHHHHTTSCTT-----TTTTCEEEEEEEESSG-GGGGHHHHTHHHHHHTTTCSEECCCEEE
T ss_pred             CCCCCHHHHHHHHhcccc-----ccCCCEEEEEEECCCc-chhhHHHHHHHHHHHHcCCEeccceEEE
Confidence            799999999999987432     3889999999997543 3333222468999999999987654443

>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}

Probab=99.31  E-value=8.4e-12  Score=117.09  Aligned_cols=125  Identities=16%  Similarity=0.180  Sum_probs=92.3

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCC---CC-----------------------------CccCCC
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD---DY-----------------------------DARCLP   52 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~---~~-----------------------------~~~~l~   52 (628)
                      .|++++|+|.|.||||+++|+.|++.+..     .++.+.   .+                             ...++.
T Consensus         3 ~~~kilIvY~S~tG~T~~vA~~Ia~~l~~-----~~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~   77 (162)
T 3klb_A            3 NDRKILVAYFSCSGVTKAVAEKLAAITGA-----DLYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPE   77 (162)
T ss_dssp             GGSCEEEEECCSSSHHHHHHHHHHHHHTC-----EEEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGG
T ss_pred             CCCCEEEEEECCCchHHHHHHHHHHHhCC-----CeEEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChh
Confidence            47899999999999999999999998853     232221   10                             123566


Q ss_pred             CCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEec-CCcChhHHHHHHHHHHHHHHhcCCeEeecce
Q 006868           53 EEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERG  131 (628)
Q Consensus        53 ~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGl-Gds~y~~f~~a~~~l~~~L~~lGa~~v~~~~  131 (628)
                      ++|.|||++||| .|.+|+.+..|++.+        .++|+++++|++ |.+.+   ..+.+.+.+.|.  |++.+ +..
T Consensus        78 ~yd~iilG~P~~-~g~~~~~~~~fl~~~--------~l~gk~v~~f~t~g~~~~---g~~~~~l~~~l~--~~~~~-~g~  142 (162)
T 3klb_A           78 KYEVLFVGFPVW-WYIAPTIINTFLESY--------DFAGKIVVPFATSGGSGI---GNCEKNLHKAYP--DIVWK-DGK  142 (162)
T ss_dssp             GCSEEEEEEECB-TTBCCHHHHHHHHTS--------CCTTCEEEEEEECSSCCS---HHHHHHHHHHCT--TSEEC-CCE
T ss_pred             hCCEEEEEcccc-cCCCCHHHHHHHHhc--------CCCCCEEEEEEEeCCCCc---cHHHHHHHHHcC--CCEee-cce
Confidence            899999999999 799999999998764        278999999997 44444   456677777775  56643 545


Q ss_pred             eeeCCCCCCchhhHHHHHHHH
Q 006868          132 LGDDQHPSGYEGALDPWMRSL  152 (628)
Q Consensus       132 ~~d~~~~~g~~~~~~~W~~~l  152 (628)
                      .+....   .+++++.|++++
T Consensus       143 ~~~g~~---~~~~v~~W~~~~  160 (162)
T 3klb_A          143 LLNGQI---TRDLVTEWFEKI  160 (162)
T ss_dssp             ECCSCC---CHHHHHHHHHHT
T ss_pred             EEeCCC---CHHHHHHHHHHh
Confidence            555432   578899999864

>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}

Probab=99.18  E-value=7.9e-11  Score=109.04  Aligned_cols=122  Identities=19%  Similarity=0.213  Sum_probs=86.0

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCC-CCcEE----eeC-------------------CC--CCccCCCCCCeEEE
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRG-CPVVV----RPV-------------------DD--YDARCLPEEDTVIF   59 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g-~~v~~----~~l-------------------~~--~~~~~l~~~~~vi~   59 (628)
                      |++++|+|.|.||||+++|+.|++.+...+ +++++    ++.                   .+  ....++.++|.|||
T Consensus         3 ~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d~iil   82 (151)
T 3edo_A            3 AKKTLILYYSWSGETKKMAEKINSEIKDSELKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYDLILI   82 (151)
T ss_dssp             CCCEEEEECCSSSHHHHHHHHHHHHSTTCEEEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCSEEEE
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHhccCCCEEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCCEEEE
Confidence            468999999999999999999999885443 22222    110                   00  12345668999999


Q ss_pred             EEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCC
Q 006868           60 VVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPS  139 (628)
Q Consensus        60 ~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~  139 (628)
                      ++||| .|.+|+.+..|++.+.       .+.++.+++|++|....   ..+.+.+.+.+.  +++.+ +...++     
T Consensus        83 G~P~~-~g~~~~~~~~fl~~~~-------~~~~k~~~~~t~gg~~~---g~~~~~l~~~~~--~~~~~-~g~~~~-----  143 (151)
T 3edo_A           83 GSPVW-SGYPATPIKTLLDQMK-------NYRGEVASFFTSAGTNH---KAYVSHFNEWAD--GLNVI-GVARDD-----  143 (151)
T ss_dssp             EEEEE-TTEECTHHHHHHHHTT-------TCCSEEEEEEECSSCCH---HHHHHHHHHHTT--TSEEE-EEEETT-----
T ss_pred             Eccee-cccccHHHHHHHHhch-------hcCCEEEEEEEeCCCCC---CcHHHHHHHHcC--CCeee-cccccH-----
Confidence            99999 6999999999999863       16789999999886654   345667777764  44433 333332     


Q ss_pred             CchhhHHHHH
Q 006868          140 GYEGALDPWM  149 (628)
Q Consensus       140 g~~~~~~~W~  149 (628)
                         .++..|+
T Consensus       144 ---~~~~~w~  150 (151)
T 3edo_A          144 ---SEVDKWS  150 (151)
T ss_dssp             ---TTHHHHH
T ss_pred             ---HHHHHHh
Confidence               2588886

>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*

Probab=99.07  E-value=4.8e-10  Score=108.30  Aligned_cols=148  Identities=13%  Similarity=0.108  Sum_probs=110.4

Q ss_pred             CCcEEEEEECCc---chHHHHHHHHHHHHHhCC--CCcEEeeCCCCCc--------------------------------
Q 006868            6 RNKLLILYASQT---GNALDAAERIGRESERRG--CPVVVRPVDDYDA--------------------------------   48 (628)
Q Consensus         6 ~~~v~I~Y~S~t---Gnte~~A~~l~~~l~~~g--~~v~~~~l~~~~~--------------------------------   48 (628)
                      ||+|+|+|+|..   |||+++|+.+.+.+.+.|  .+++++++.+.+.                                
T Consensus         1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   80 (201)
T 1t5b_A            1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDEL   80 (201)
T ss_dssp             CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence            578999999998   999999999999999876  7899999977532                                


Q ss_pred             -cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcChhH--HHHHHHHHHH
Q 006868           49 -RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGYQK--FNFVAKKLDN  117 (628)
Q Consensus        49 -~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~y~~--f~~a~~~l~~  117 (628)
                       +++.++|.|||++|+| .+.+|..++.|++++.....        +...++|+++++|+.+...|..  |+.+...+..
T Consensus        81 ~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~  159 (201)
T 1t5b_A           81 IAELKAHDVIVIAAPMY-NFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKV  159 (201)
T ss_dssp             HHHHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHH
T ss_pred             HHHHHhCCEEEEEeCcc-cCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHH
Confidence             2344789999999999 89999999999999863211        1234889999999986665643  5557788889


Q ss_pred             HHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868          118 RLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH  157 (628)
Q Consensus       118 ~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~  157 (628)
                      .|..+|++.+.. ..+.....  .++..++|.++..+.+.
T Consensus       160 ~l~~~G~~~~~~-~~~~~~~~--~~~~~~~~l~~a~~~~~  196 (201)
T 1t5b_A          160 FLGFIGITDVNF-VFAEGIAY--GPEVAAKAQADAKAAID  196 (201)
T ss_dssp             HHHHTTCCCEEE-EEECCGGG--CHHHHHHHHHHHHHHHH
T ss_pred             HHhhcCcceeEE-EEEecccC--ChHHHHHHHHHHHHHHH
Confidence            999999997743 33322211  23344677776655553

>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*

Probab=99.03  E-value=2.5e-10  Score=108.14  Aligned_cols=114  Identities=11%  Similarity=0.121  Sum_probs=88.3

Q ss_pred             CcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc-------------------CCCCCCeEEEEEecCC
Q 006868            7 NKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDAR-------------------CLPEEDTVIFVVSTTG   65 (628)
Q Consensus         7 ~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~-------------------~l~~~~~vi~~~sT~g   65 (628)
                      |+|+|+|||..  |||+++|+.+++.+..     +++++.+++..                   ++.++|.+||++|+| 
T Consensus         1 Mkilii~gS~~~~g~t~~la~~i~~~l~~-----~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~y-   74 (174)
T 3gfs_A            1 MNMLVINGTPRKHGRTRIAASYIAALYHT-----DLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEY-   74 (174)
T ss_dssp             --CEEEECCCCTTCHHHHHHHHHHHHTTC-----EEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEECS-
T ss_pred             CEEEEEECCCCCCCcHHHHHHHHHHhCcc-----eEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCCc-
Confidence            57999999998  9999999999998763     56666554331                   344789999999999 


Q ss_pred             CCCCChhHHHHHHHHHhccCcccccCCcEEEEEec-CCcChhHHHHHHHHHHHHHHhcCCeEeecceee
Q 006868           66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERGLG  133 (628)
Q Consensus        66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGl-Gds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~  133 (628)
                      +|.+|..++.|++++...     .++|+.+++|+. |..  ..+..+...+...|..+|+..+.+.+.+
T Consensus        75 ~~~~p~~lk~~lD~l~~~-----~~~gK~~~~~~~sgg~--~g~~~a~~~l~~~l~~~g~~~v~~~v~i  136 (174)
T 3gfs_A           75 HSGMSGALKNALDFLSSE-----QFKYKPVALLAVAGGG--DGGINALNNMRTVMRGVYANVIPKQLVL  136 (174)
T ss_dssp             SSSCCHHHHHHHHTCCHH-----HHTTCEEEEEEECCST--TCSHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHhCHh-----hhCCCcEEEEEECCCC--hhHHHHHHHHHHHHHHcCCEEecceEEe
Confidence            999999999999987542     388999999984 322  1245678899999999999977554444

>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*

Probab=99.01  E-value=1e-09  Score=109.70  Aligned_cols=148  Identities=16%  Similarity=0.113  Sum_probs=112.6

Q ss_pred             CCcEEEEEECCc--chHHHHHHHHHHHHHhC-CCCcEEeeCCCCCc---------------------c-------CCCCC
Q 006868            6 RNKLLILYASQT--GNALDAAERIGRESERR-GCPVVVRPVDDYDA---------------------R-------CLPEE   54 (628)
Q Consensus         6 ~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~-g~~v~~~~l~~~~~---------------------~-------~l~~~   54 (628)
                      ||+|+|+|||..  |||+++|+.+.+.+.+. |.+++++++.+.++                     .       ++.++
T Consensus         1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~A   80 (242)
T 1sqs_A            1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLES   80 (242)
T ss_dssp             CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHC
Confidence            578999999986  99999999999999987 99999999887532                     1       13478


Q ss_pred             CeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeee
Q 006868           55 DTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGD  134 (628)
Q Consensus        55 ~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d  134 (628)
                      |.|||++|+| .|.+|..++.|++++.... ....+.|+++++|+.+...  ....+.+.+...|..+|++.+.+....+
T Consensus        81 D~iI~~sP~y-~~~~p~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~G~~~v~~~~~~~  156 (242)
T 1sqs_A           81 DIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYMGGQILHQVSITN  156 (242)
T ss_dssp             SEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHTTCEEEEEEEEEG
T ss_pred             CEEEEEcccc-ccCCCHHHHHHHHHHHHhc-cccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHCCCeeeeEEEEec
Confidence            9999999999 9999999999999984321 1124889999999864321  1224567889999999999876543333


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHh
Q 006868          135 DQHPSGYEGALDPWMRSLWRRLHQ  158 (628)
Q Consensus       135 ~~~~~g~~~~~~~W~~~l~~~l~~  158 (628)
                      ..++ ...+.++++.+++.+.+..
T Consensus       157 ~~~~-~~~~~~~~~~~~la~~i~~  179 (242)
T 1sqs_A          157 SLKD-IAEAQLMEATYKIEDVLEG  179 (242)
T ss_dssp             GGGG-GHHHHHHHHHHHHHHHHTT
T ss_pred             cCCh-HHHHHHHHHHHHHHHHHhc
Confidence            2122 3667888899988888854

>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*

Probab=99.00  E-value=9.6e-10  Score=105.82  Aligned_cols=119  Identities=13%  Similarity=0.087  Sum_probs=95.2

Q ss_pred             CCCcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCc------------------cCCCCCCeEEEEEecC
Q 006868            5 KRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDA------------------RCLPEEDTVIFVVSTT   64 (628)
Q Consensus         5 ~~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~------------------~~l~~~~~vi~~~sT~   64 (628)
                      .+|+|+|+|||..  |||+++|+.+++.+. .|.+++++++.+++.                  +++.++|.|||++|+|
T Consensus         5 ~~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y   83 (193)
T 1rtt_A            5 DDIKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEY   83 (193)
T ss_dssp             --CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEE
T ss_pred             CCceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccc
Confidence            4578999999985  999999999999988 788899999887432                  2345789999999999


Q ss_pred             CCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868           65 GQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV  128 (628)
Q Consensus        65 g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~  128 (628)
                       .|.+|..++.|++++.....  ..++|+++++|+.+...++ ...+...+...|..+|++.+.
T Consensus        84 -~~~~p~~lK~~iD~~~~~~~--~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~  143 (193)
T 1rtt_A           84 -NYSMAGVLKNAIDWASRPPE--QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN  143 (193)
T ss_dssp             -TTEECHHHHHHHHHHTCSSS--CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred             -ccCcCHHHHHHHHHhccccC--cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence             88999999999999864311  2488999999998644333 235678899999999998876

>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}

Probab=98.94  E-value=7.7e-09  Score=103.42  Aligned_cols=123  Identities=19%  Similarity=0.124  Sum_probs=98.0

Q ss_pred             cCCCcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc---------------CCCCCCeEEEEEecCCC
Q 006868            4 EKRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDAR---------------CLPEEDTVIFVVSTTGQ   66 (628)
Q Consensus         4 ~~~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~---------------~l~~~~~vi~~~sT~g~   66 (628)
                      ..||+|+|+|||..  |+|+.+|+.+.+.+.+.|++++++++.+++..               .+.+.|.|||++|+| +
T Consensus        32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y-n  110 (247)
T 2q62_A           32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPER-H  110 (247)
T ss_dssp             CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS-S
T ss_pred             CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC-C
Confidence            35789999999985  99999999999999999999999999887521               233789999999999 9


Q ss_pred             CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868           67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE  129 (628)
Q Consensus        67 G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~  129 (628)
                      |.+|..++.|++++.........++|+.+++++.+-.. +.. .+...+...|..+|+..+.+
T Consensus       111 ~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg~-~a~~~Lr~~l~~lg~~~v~~  171 (247)
T 2q62_A          111 GAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QSF-NAVNQMRILGRWMRMITIPN  171 (247)
T ss_dssp             SSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEECSC
T ss_pred             CCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cHH-HHHHHHHHHHHHCCCEEeCC
Confidence            99999999999998543211234899999999985322 211 45678889999999987643

>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4

Probab=98.92  E-value=2.8e-09  Score=102.26  Aligned_cols=112  Identities=19%  Similarity=0.175  Sum_probs=92.0

Q ss_pred             CcEEEEEECCc--chHHHHHHHHHHHHHhC------CCCcEEeeCCCCCc-----------------------------c
Q 006868            7 NKLLILYASQT--GNALDAAERIGRESERR------GCPVVVRPVDDYDA-----------------------------R   49 (628)
Q Consensus         7 ~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~------g~~v~~~~l~~~~~-----------------------------~   49 (628)
                      |+|+|+|||..  |||+++|+.+.+.+.+.      |.+++++++.+.+.                             +
T Consensus         1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (191)
T 1t0i_A            1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR   80 (191)
T ss_dssp             CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred             CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHH
Confidence            57999999998  99999999999999876      68888888765221                             1


Q ss_pred             CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868           50 CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV  128 (628)
Q Consensus        50 ~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~  128 (628)
                      ++.++|.|||++|+| .|.+|..++.|++++..      .++|+++++|+.|... .  ..+...+...|..+|++.+.
T Consensus        81 ~l~~aD~iI~~sP~y-~~~~p~~lK~~iD~~~~------~l~gK~~~~~~~G~~~-~--~~~~~~l~~~l~~~G~~~~~  149 (191)
T 1t0i_A           81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLYH------EWHGKPALVVSYGGHG-G--SKCNDQLQEVLHGLKMNVIG  149 (191)
T ss_dssp             HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCST------TTTTCEEEEEEEETTT-T--HHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHhCCEEEEEeceE-CCCCCHHHHHHHHHHHh------hcCCCEEEEEEeCCcc-h--hhHHHHHHHHHHHCCCEEcc
Confidence            244889999999999 89999999999998743      2789999999887643 2  35678899999999998775

>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4

Probab=98.78  E-value=3.1e-08  Score=100.33  Aligned_cols=121  Identities=16%  Similarity=0.086  Sum_probs=97.0

Q ss_pred             CCCcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc----------------CCCCCCeEEEEEecCCC
Q 006868            5 KRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDAR----------------CLPEEDTVIFVVSTTGQ   66 (628)
Q Consensus         5 ~~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~----------------~l~~~~~vi~~~sT~g~   66 (628)
                      .+|+|+|+|||..  |+|+.+|+.+++.+.+.|.+++++++.+.+..                .+...|.+||++|+| +
T Consensus        57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Y-n  135 (279)
T 2fzv_A           57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPER-H  135 (279)
T ss_dssp             SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEE-T
T ss_pred             CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCcc-c
Confidence            4789999999986  99999999999999999999999999886521                223689999999999 9


Q ss_pred             CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868           67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV  128 (628)
Q Consensus        67 G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~  128 (628)
                      |.+|..++.|++|+.........++|+.+++++.+... +.. .+...+...|..+|+..+.
T Consensus       136 ~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv~  195 (279)
T 2fzv_A          136 GQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTIP  195 (279)
T ss_dssp             TEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEECS
T ss_pred             cCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEeC
Confidence            99999999999998543211234899999999985332 222 3567888899999998763

>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}

Probab=98.77  E-value=4.9e-08  Score=94.87  Aligned_cols=147  Identities=12%  Similarity=0.109  Sum_probs=104.9

Q ss_pred             CCcEEEEEECCc----chHHHHHHHHHHHHHhCC--CCcEEeeCC--CCCcc----------------------------
Q 006868            6 RNKLLILYASQT----GNALDAAERIGRESERRG--CPVVVRPVD--DYDAR----------------------------   49 (628)
Q Consensus         6 ~~~v~I~Y~S~t----Gnte~~A~~l~~~l~~~g--~~v~~~~l~--~~~~~----------------------------   49 (628)
                      ||+|+|+|||..    |+|.++|+.+.+.+++.|  .+++++++.  +....                            
T Consensus         1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   80 (208)
T 2hpv_A            1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQ   80 (208)
T ss_dssp             -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHH
T ss_pred             CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHh
Confidence            578999999987    999999999999999887  889999998  64321                            


Q ss_pred             ----------CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcChhHHHHH
Q 006868           50 ----------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGYQKFNFV  111 (628)
Q Consensus        50 ----------~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~y~~f~~a  111 (628)
                                ++.++|.|||++|+| .+.+|..++.|++++.....        +...++|++++++......|.+-..+
T Consensus        81 ~~~~~~~~~~~l~~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~  159 (208)
T 2hpv_A           81 KVARFNELTDQFLSADKVVIANPMW-NLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFA  159 (208)
T ss_dssp             HHHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHH
T ss_pred             hHHHHHHHHHHHHhCCEEEEEeccc-cCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchH
Confidence                      244789999999999 99999999999999864211        12347899999987633344421234


Q ss_pred             HHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868          112 AKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus       112 ~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                      ...+...|.-+|++.+.. ..+.....  ..+..++|.++..+..
T Consensus       160 ~~~l~~~~~~~G~~~~~~-~~~~~~~~--~~~~~~~~l~~a~~~~  201 (208)
T 2hpv_A          160 SQYIKAILNFIGVDQVDG-LFIEGIDH--FPDRAEELLNTAMTKA  201 (208)
T ss_dssp             HHHHHHHHHHTTCCEEEE-EEEECTTT--CGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeeeE-EEEccccC--CHHHHHHHHHHHHHHH
Confidence            567777888999987754 33332221  2245666666554443

>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}

Probab=98.74  E-value=5.1e-08  Score=93.76  Aligned_cols=124  Identities=12%  Similarity=0.021  Sum_probs=96.2

Q ss_pred             CCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc-----------------cCCCCCCeEEEEEecCCC
Q 006868            6 RNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDA-----------------RCLPEEDTVIFVVSTTGQ   66 (628)
Q Consensus         6 ~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~-----------------~~l~~~~~vi~~~sT~g~   66 (628)
                      |++|+|++||.  .|+|.++|+.+.+.+. .|.+++++++.+.+.                 +.+.++|.+||++|+| +
T Consensus         2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y-~   79 (192)
T 3fvw_A            2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY-N   79 (192)
T ss_dssp             -CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB-T
T ss_pred             CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc-c
Confidence            67999999998  7999999999999997 688899999877542                 1234789999999999 9


Q ss_pred             CCCChhHHHHHHHHHhccC-----cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceee
Q 006868           67 GDTPDSMKVFWRFLLQKSL-----SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLG  133 (628)
Q Consensus        67 G~~p~~~~~F~~~L~~~~~-----~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~  133 (628)
                      +.+|..++.|++++.....     ....++|+++++++.+...  .+..+...+...|..+|++.+.....+
T Consensus        80 ~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v~~~v~~  149 (192)
T 3fvw_A           80 YAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLVDQLTGV  149 (192)
T ss_dssp             TBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCCCEEE
T ss_pred             cCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeeecceeec
Confidence            9999999999999975321     1125899999999886542  123345788889999999987554443

>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}

Probab=98.17  E-value=1.5e-09  Score=105.15  Aligned_cols=124  Identities=16%  Similarity=0.126  Sum_probs=98.3

Q ss_pred             CCccCCCcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEe-eCCCCC------------------ccCCCCCCeEEE
Q 006868            1 MREEKRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVR-PVDDYD------------------ARCLPEEDTVIF   59 (628)
Q Consensus         1 ~~~~~~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~-~l~~~~------------------~~~l~~~~~vi~   59 (628)
                      |+...+|+|+|+|||..  |+|+++|+.+.+.+.+ |.+++++ ++.+++                  .+.+.+.|.|||
T Consensus         1 ~~~~~~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi   79 (199)
T 3s2y_A            1 MTTTSPLHFVTLLGSLRKASFNAAVARALPEIAPE-GIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVI   79 (199)
Confidence            66666789999999986  8999999999999987 8888888 886621                  124558899999


Q ss_pred             EEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868           60 VVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE  129 (628)
Q Consensus        60 ~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~  129 (628)
                      ++|+| ++.+|..++.|++++.....+  .+.|+++++++.+...++ ...+...+...|..+|+..+..
T Consensus        80 ~tP~Y-~~s~p~~lK~~iD~l~~~~~~--~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~~l~~lg~~~v~~  145 (199)
T 3s2y_A           80 VTPEY-NYSVPGVLKNAIDWLSRVSPQ--PLAGKPVALVTASPGMIG-GARAQYHLRQSLVFLDAYVLNR  145 (199)
Confidence            99999 899999999999998653211  488999999996433333 3346688888899999987754

>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*

Probab=98.70  E-value=7.7e-08  Score=93.07  Aligned_cols=123  Identities=16%  Similarity=0.156  Sum_probs=94.6

Q ss_pred             CCccCCCcEEEEEEC--CcchHHHHHHHHHHHHHhCCCCcE-EeeCCCCCcc------------------CCCCCCeEEE
Q 006868            1 MREEKRNKLLILYAS--QTGNALDAAERIGRESERRGCPVV-VRPVDDYDAR------------------CLPEEDTVIF   59 (628)
Q Consensus         1 ~~~~~~~~v~I~Y~S--~tGnte~~A~~l~~~l~~~g~~v~-~~~l~~~~~~------------------~l~~~~~vi~   59 (628)
                      |..+.+|+|++++||  ..|+|+.+|+.+.+.+. .|.+++ ++++.+++.-                  .+.+.|.+||
T Consensus         1 m~~M~~mkIl~I~GS~r~~s~t~~la~~~~~~~~-~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi   79 (199)
T 4hs4_A            1 MTTTSPLHFVTLLGSLRKASFNAAVARALPEIAP-EGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVI   79 (199)
T ss_dssp             ----CCEEEEEEECCCSTTCHHHHHHHHHHHHCC-TTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEE
T ss_pred             CCCCCCCEEEEEEcCCCCCChHHHHHHHHHHHcc-CCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEE
Confidence            444456799999999  67999999999999885 577888 8887654320                  1347899999


Q ss_pred             EEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868           60 VVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV  128 (628)
Q Consensus        60 ~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~  128 (628)
                      ++|+| ++.+|.-++.|++|+...  ....+.||++++++.+...++.. .+...+...|..+|+..+.
T Consensus        80 ~tP~Y-~~s~p~~LK~~iD~~~~~--~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~  144 (199)
T 4hs4_A           80 VTPEY-NYSVPGVLKNAIDWLSRV--SPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLN  144 (199)
T ss_dssp             EECCB-TTBCCHHHHHHHHHHTTS--SSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECC
T ss_pred             EcCcc-CCCcCHHHHHHHHHhccc--CCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcC
Confidence            99999 999999999999999662  22458999999999864444422 3567889999999998774

>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6

Probab=98.65  E-value=5.3e-08  Score=92.44  Aligned_cols=119  Identities=14%  Similarity=0.072  Sum_probs=84.6

Q ss_pred             CCCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc------------------------cCCCCCCeEE
Q 006868            5 KRNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDA------------------------RCLPEEDTVI   58 (628)
Q Consensus         5 ~~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~------------------------~~l~~~~~vi   58 (628)
                      +||+|+|+|+|.  +|||+++|+.+++.+     .++.+++.+.+.                        +++.++|.||
T Consensus         2 ~mMkilii~~S~r~~g~t~~la~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii   76 (184)
T 1rli_A            2 NAMKIAVINGGTRSGGNTDVLAEKAVQGF-----DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILI   76 (184)
T ss_dssp             ---CEEEEESSCSSCCHHHHHHHHHHTTT-----CCEEEEC-----------------------CHHHHHHHHHTCSEEE
T ss_pred             CCcEEEEEECCCCCCccHHHHHHHHHcCC-----eEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEE
Confidence            467999999995  499999999998754     466666655322                        1345899999


Q ss_pred             EEEecCCCCCCChhHHHHHHHHHhccCc------ccccCCcEEEEEecCCcChh-HHHHHHHHHHHHHHhcCCeEeec
Q 006868           59 FVVSTTGQGDTPDSMKVFWRFLLQKSLS------KQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVE  129 (628)
Q Consensus        59 ~~~sT~g~G~~p~~~~~F~~~L~~~~~~------~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L~~lGa~~v~~  129 (628)
                      |++|+| .|.+|..++.|++++......      ...++|+++++|+.+..... .+..+.+.+...|..+|++.+..
T Consensus        77 ~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~~  153 (184)
T 1rli_A           77 FATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGY  153 (184)
T ss_dssp             EEEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEEE
T ss_pred             EEeCcc-ccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccceE
Confidence            999999 899999999999987542111      12378999999988644211 23446788888999999987753

>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}

Probab=98.56  E-value=8e-07  Score=86.82  Aligned_cols=153  Identities=16%  Similarity=0.113  Sum_probs=112.4

Q ss_pred             cCCCcEEEEEECC------cchHHHHHHHHHHHHHhCCCCcEEeeCCC-CCc----cCCCCCCeEEEEEecCCCCCCChh
Q 006868            4 EKRNKLLILYASQ------TGNALDAAERIGRESERRGCPVVVRPVDD-YDA----RCLPEEDTVIFVVSTTGQGDTPDS   72 (628)
Q Consensus         4 ~~~~~v~I~Y~S~------tGnte~~A~~l~~~l~~~g~~v~~~~l~~-~~~----~~l~~~~~vi~~~sT~g~G~~p~~   72 (628)
                      ..||+|+|++||.      .+++..+|+.+.+.+++.|.++++.++++ ++.    +.+...|.|||++|.| .+.+|.-
T Consensus        23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~~P~y-~~~~p~~  101 (218)
T 3rpe_A           23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQMPAW-WMGEPWI  101 (218)
T ss_dssp             -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEEEECB-TTBCCHH
T ss_pred             ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEECChH-hccCCHH
Confidence            3688999999997      37899999999999999999999999975 222    2345899999999999 9999999


Q ss_pred             HHHHHHHHHhccC-------------------cccccCCcEEEEEecCCcChhHH-------HH-----HHHHHHHHHHh
Q 006868           73 MKVFWRFLLQKSL-------------------SKQWLEGVRYAVFGLGDSGYQKF-------NF-----VAKKLDNRLLD  121 (628)
Q Consensus        73 ~~~F~~~L~~~~~-------------------~~~~l~~~~~aVfGlGds~y~~f-------~~-----a~~~l~~~L~~  121 (628)
                      ++.|++++.....                   +...|+|+++.|+-........|       +.     ...-+...|.-
T Consensus       102 lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~~~~l~p~~~~l~f  181 (218)
T 3rpe_A          102 LKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKANQF  181 (218)
T ss_dssp             HHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCHHHHHHHHHHHHHh
Confidence            9999998754321                   12357899988876644432222       21     22335667778


Q ss_pred             cCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCC
Q 006868          122 LGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP  161 (628)
Q Consensus       122 lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~  161 (628)
                      +|++.+-+....+...    ++++++|++++.+.|.+.++
T Consensus       182 ~G~~~l~~~~~~g~~~----~~~~~~~~~~~~~~L~~~~~  217 (218)
T 3rpe_A          182 LGMKPLPTFMCNDVIK----QPDIEGDIARYRQHLAENVN  217 (218)
T ss_dssp             TTCEECCCEEECSTTT----SCCHHHHHHHHHHHHHHHTC
T ss_pred             CCCEEeceEEEeCCCC----hHHHHHHHHHHHHHHHHhcc
Confidence            9999886554444432    34889999998888876654

>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*

Probab=98.51  E-value=6e-07  Score=87.48  Aligned_cols=148  Identities=16%  Similarity=0.118  Sum_probs=105.2

Q ss_pred             CCcEEEEEECCcc---hHHHHHHHHHHHHHhC--CCCcEEeeCCCCCc--------------------------------
Q 006868            6 RNKLLILYASQTG---NALDAAERIGRESERR--GCPVVVRPVDDYDA--------------------------------   48 (628)
Q Consensus         6 ~~~v~I~Y~S~tG---nte~~A~~l~~~l~~~--g~~v~~~~l~~~~~--------------------------------   48 (628)
                      ||+|+|+|||..+   +|.++|+.+.+.+++.  |.+++++++.+.+.                                
T Consensus         1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (212)
T 3r6w_A            1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQ   80 (212)
T ss_dssp             CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence            6899999999765   6999999999999987  89999999865421                                


Q ss_pred             --cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc---------Cc---ccccCCcEEEEEec-CC-cChh-----H
Q 006868           49 --RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS---------LS---KQWLEGVRYAVFGL-GD-SGYQ-----K  107 (628)
Q Consensus        49 --~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~---------~~---~~~l~~~~~aVfGl-Gd-s~y~-----~  107 (628)
                        +++...|.|||++|+| .+.+|..++.|++++....         -+   ...++|+++.++.. |. ..|+     .
T Consensus        81 ~~~~l~~AD~iV~~~P~y-~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~  159 (212)
T 3r6w_A           81 LVGELFDSDLLVISTPMY-NFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQA  159 (212)
T ss_dssp             HHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGG
T ss_pred             HHHHHHhCCEEEEEcCcc-cccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCc
Confidence              1134689999999999 9999999999999985321         11   33588999888876 42 2332     1


Q ss_pred             HHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868          108 FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH  157 (628)
Q Consensus       108 f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~  157 (628)
                      +......+...|.-+|++.+.. ..+.....  ..+..++|.++..+.+.
T Consensus       160 ~~~~~~~l~~~l~~~G~~~~~~-v~~~g~~~--~~~~~~~~l~~a~~~~~  206 (212)
T 3r6w_A          160 MNHADPWLRTALGFIGIDEVTV-VAAEGEES--GGRSFEDSCDEAEQRLL  206 (212)
T ss_dssp             GCCSHHHHHHHHHHHTCCEEEE-EEECCTTT--CHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHCCCceeEE-EEEecccC--CHHHHHHHHHHHHHHHH
Confidence            2334567788888899988743 33333221  34556667666555443

>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A

Probab=98.48  E-value=4.3e-07  Score=87.14  Aligned_cols=123  Identities=15%  Similarity=0.152  Sum_probs=94.2

Q ss_pred             CCCcEEEEEECCc--chHHHHHHHHHH----HHHhC--CCCcEEeeCCCCCcc-------------------CCCCCCeE
Q 006868            5 KRNKLLILYASQT--GNALDAAERIGR----ESERR--GCPVVVRPVDDYDAR-------------------CLPEEDTV   57 (628)
Q Consensus         5 ~~~~v~I~Y~S~t--Gnte~~A~~l~~----~l~~~--g~~v~~~~l~~~~~~-------------------~l~~~~~v   57 (628)
                      -|++|+++.||..  |+|..+|+.+.+    .+++.  |.+++++++.+.++.                   ++.+.|.+
T Consensus        10 ~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~i   89 (191)
T 3k1y_A           10 HMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGL   89 (191)
T ss_dssp             CSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEE
T ss_pred             hhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEE
Confidence            5889999999974  899999999999    66666  778899998765421                   12278999


Q ss_pred             EEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeee
Q 006868           58 IFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGD  134 (628)
Q Consensus        58 i~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d  134 (628)
                      ||++|+| ++.+|..++.|++++..     ..+.|+++++++.|.. +.........+...|..+|+..+.+.+.+.
T Consensus        90 vi~sP~Y-~~~~~~~lK~~iD~~~~-----~~l~gK~~~~v~t~G~-~~~~~~~~~~L~~il~~lg~~vv~~~v~~~  159 (191)
T 3k1y_A           90 VVATPVF-KASYTGLFKMFFDILDT-----DALTGMPTIIAATAGS-ARHSLVLDYALRPLLSYMRAVVVPTGVFAA  159 (191)
T ss_dssp             EEEEECB-TTBSCHHHHHHHHHSCT-----TTTTTCEEEEEEEESS-STTTTHHHHTHHHHHHHTTCEECSCCEEEE
T ss_pred             EEEcCcc-CCcCcHHHHHHHHHhhh-----hhcCCCEEEEEEeCCC-cchhhHHHHHHHHHHHHCCCEEcCcEEEec
Confidence            9999999 99999999999999854     2489999999998743 222222223488889999999875544443

>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*

Probab=98.39  E-value=1.1e-06  Score=84.52  Aligned_cols=150  Identities=12%  Similarity=0.074  Sum_probs=107.7

Q ss_pred             CcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc-------------------------CCCCCCeEEE
Q 006868            7 NKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDAR-------------------------CLPEEDTVIF   59 (628)
Q Consensus         7 ~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~-------------------------~l~~~~~vi~   59 (628)
                      |+|+|++||-  .++|..+|+.+.+.+ +.|.+++++++.+....                         ++.+.|.|||
T Consensus         1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~   79 (196)
T 3lcm_A            1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIF   79 (196)
T ss_dssp             CEEEEEECCSCTTSHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEE
T ss_pred             CEEEEEEeCCCCCChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEE
Confidence            5799999996  457899999999999 78999999999765321                         1236899999


Q ss_pred             EEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcC--hhH--HHHHHHHHHHHHHhcCCeEe
Q 006868           60 VVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSG--YQK--FNFVAKKLDNRLLDLGATAV  127 (628)
Q Consensus        60 ~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~--y~~--f~~a~~~l~~~L~~lGa~~v  127 (628)
                      ++|.| .+.+|..++.|++++.....        +...++|+++.++..+...  |..  +......+...|.-+|++.+
T Consensus        80 ~~P~y-~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~~~  158 (196)
T 3lcm_A           80 IFPIW-WSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAISPV  158 (196)
T ss_dssp             EEECB-TTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCCCE
T ss_pred             ECchh-hccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCcee
Confidence            99999 99999999999999854211        1235899999998886655  421  11112456666777899876


Q ss_pred             ecceeeeCCCCCCchhhHHHHHHHHHHHHHhhC
Q 006868          128 VERGLGDDQHPSGYEGALDPWMRSLWRRLHQID  160 (628)
Q Consensus       128 ~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~  160 (628)
                      ..........  ..++...+|++++.+...+.+
T Consensus       159 ~~~~~~g~~~--~~~~~~~~~l~~~~~~~~~~~  189 (196)
T 3lcm_A          159 KLTELTSIEK--ISDDERQKLLHKVAQITRNIL  189 (196)
T ss_dssp             EEEEECSTTT--SCHHHHHHHHHHHHHHHHTCC
T ss_pred             eEEEEeCcCC--CCHHHHHHHHHHHHHHHHHHH
Confidence            5443333321  246778899998887776544

>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*

Probab=98.38  E-value=1.6e-06  Score=87.92  Aligned_cols=151  Identities=15%  Similarity=0.097  Sum_probs=103.5

Q ss_pred             CCcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCc-----------------------------------
Q 006868            6 RNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDA-----------------------------------   48 (628)
Q Consensus         6 ~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~-----------------------------------   48 (628)
                      ||+|+|+|||..  |+|..+|+.+.+.+++.|.+|+++++.+...                                   
T Consensus         2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (273)
T 1d4a_A            2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLS   81 (273)
T ss_dssp             CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBC
T ss_pred             CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCc
Confidence            679999999986  6999999999999999999999999976542                                   


Q ss_pred             cC-------CCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcC---hhH--H
Q 006868           49 RC-------LPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSG---YQK--F  108 (628)
Q Consensus        49 ~~-------l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~---y~~--f  108 (628)
                      .+       |..+|.|||++|.| .+.+|..++.|++++.....        +...++|+++.++......   |.+  .
T Consensus        82 dd~~~~~~~l~~AD~IV~~~P~y-~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~g~  160 (273)
T 1d4a_A           82 PDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGI  160 (273)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTTBT
T ss_pred             HHHHHHHHHHHhCCEEEEECchh-hccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhccccc
Confidence            01       34678999999999 99999999999999854321        1245889999888764333   421  1


Q ss_pred             ----HHHHHHHH-HHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhh
Q 006868          109 ----NFVAKKLD-NRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI  159 (628)
Q Consensus       109 ----~~a~~~l~-~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~  159 (628)
                          ......+. ..|.-+|++.+.+....... .. .++..+.|.++..+.+.+.
T Consensus       161 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~l~~l  214 (273)
T 1d4a_A          161 HGDMNVILWPIQSGILHFCGFQVLEPQLTYSIG-HT-PADARIQILEGWKKRLENI  214 (273)
T ss_dssp             TCCHHHHHHHHHTTTTGGGTCEECCCEEETTGG-GS-CHHHHHHHHHHHHHHHTTG
T ss_pred             CCCHHHHHHHHHHHHHHhCCCeeeeEEEEeccc-cC-CHHHHHHHHHHHHHHHHHH
Confidence                11222222 34566898876443332221 11 2345666777766666543

>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}

Probab=98.35  E-value=1.1e-06  Score=84.40  Aligned_cols=154  Identities=11%  Similarity=0.049  Sum_probs=105.5

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc----------cCCCCCCeEEEEEecCCCCCCChhHHH
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA----------RCLPEEDTVIFVVSTTGQGDTPDSMKV   75 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~----------~~l~~~~~vi~~~sT~g~G~~p~~~~~   75 (628)
                      ||+|+|++||..++...+++.+.+.+++.|.+++++++.+..+          +.+...|.|||++|.| .+.+|.-++.
T Consensus         1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~lK~   79 (192)
T 3f2v_A            1 MPKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLLKQ   79 (192)
T ss_dssp             -CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHHHH
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHHHH
Confidence            6889999999998866899999999998898899998864322          2345899999999999 9999999999


Q ss_pred             HHHHHHhccC----cccccCCcEEEEEecCCcC---hh-------HHHHHHHHHHHHHHhcCCeEeecceeeeCCCC---
Q 006868           76 FWRFLLQKSL----SKQWLEGVRYAVFGLGDSG---YQ-------KFNFVAKKLDNRLLDLGATAVVERGLGDDQHP---  138 (628)
Q Consensus        76 F~~~L~~~~~----~~~~l~~~~~aVfGlGds~---y~-------~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~---  138 (628)
                      |++++.....    ....|+|+++.++......   |.       .......-+...|.-+|++.+-+....+....   
T Consensus        80 ~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~~~~g~~~~~~~  159 (192)
T 3f2v_A           80 WLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPFTFHTIDSNAGY  159 (192)
T ss_dssp             HHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCEEEEC-------
T ss_pred             HHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeEEEecccccccc
Confidence            9999754321    1235899999988774443   32       12233344677788899997755444333210   


Q ss_pred             -CCchhhHHHHHHHHHHHHHhhC
Q 006868          139 -SGYEGALDPWMRSLWRRLHQID  160 (628)
Q Consensus       139 -~g~~~~~~~W~~~l~~~l~~~~  160 (628)
                       .-.+++++..+++..+.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~y~~~l~~~~  182 (192)
T 3f2v_A          160 SEAARQEVERSARDYLAWLDALQ  182 (192)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHH
Confidence             0024556666666556565443

>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}

Probab=98.34  E-value=1.6e-06  Score=83.26  Aligned_cols=150  Identities=13%  Similarity=0.044  Sum_probs=102.7

Q ss_pred             CCCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcE-EeeCCCCCc-------------------cCCCCCCeEEEEEe
Q 006868            5 KRNKLLILYASQ--TGNALDAAERIGRESERRGCPVV-VRPVDDYDA-------------------RCLPEEDTVIFVVS   62 (628)
Q Consensus         5 ~~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~-~~~l~~~~~-------------------~~l~~~~~vi~~~s   62 (628)
                      .+|+|++++||.  .++|..+|+.+.+.+ +.|++++ ++++.+.+.                   +.+.+.|.+||++|
T Consensus         3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~-~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~sP   81 (193)
T 3svl_A            3 EKLQVVTLLGSLRKGSFNGMVARTLPKIA-PASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTP   81 (193)
T ss_dssp             -CEEEEEEECCCSTTCHHHHHHHHGGGTS-CTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEEC
T ss_pred             CCCEEEEEEccCCCCCHHHHHHHHHHHHc-cCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEEec
Confidence            458899999995  689999999887644 5678888 888876532                   11237899999999


Q ss_pred             cCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee-cce-------eee
Q 006868           63 TTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV-ERG-------LGD  134 (628)
Q Consensus        63 T~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~-~~~-------~~d  134 (628)
                      +| ++.+|..++.|++|+....  ...+.|+++++++..-..++. ..+...+...|..+|+..+- |..       ..|
T Consensus        82 ~y-~~~~~~~lK~~iD~~~~~~--~~~~~gK~~~~~~~s~g~~gg-~~a~~~Lr~~l~~lg~~v~~~~~~~~~~~~~~f~  157 (193)
T 3svl_A           82 EY-NYSVPGGLKNAIDWLSRLP--DQPLAGKPVLIQTSSMGVIGG-ARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVD  157 (193)
T ss_dssp             CB-TTBCCHHHHHHHHHHHTST--TCTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHTTCEECCSSCEEETTGGGGEE
T ss_pred             cc-CCCCCHHHHHHHHHHhhcC--ccccCCCeEEEEEeCCCCcch-HHHHHHHHHHHHHCCCEEcCCCeEeecchhhhcC
Confidence            99 9999999999999997632  234899999999862222222 14567888999999998763 212       223


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHhh
Q 006868          135 DQHPSGYEGALDPWMRSLWRRLHQI  159 (628)
Q Consensus       135 ~~~~~g~~~~~~~W~~~l~~~l~~~  159 (628)
                      +++.+-.+++..+..+.+.+.+...
T Consensus       158 ~~~g~l~d~~~~~~l~~~~~~~~~~  182 (193)
T 3svl_A          158 PQTGEVIDQGTLDHLTGQLTAFGEF  182 (193)
T ss_dssp             TTTTEECCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHH
Confidence            2200102345555666666665543

>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*

Probab=98.32  E-value=8.2e-06  Score=79.01  Aligned_cols=145  Identities=14%  Similarity=0.075  Sum_probs=100.4

Q ss_pred             CCcEEEEEECCc------chHHHHHHHHHHHHHhCCCCcEEeeCCCC-Cc----cCCCCCCeEEEEEecCCCCCCChhHH
Q 006868            6 RNKLLILYASQT------GNALDAAERIGRESERRGCPVVVRPVDDY-DA----RCLPEEDTVIFVVSTTGQGDTPDSMK   74 (628)
Q Consensus         6 ~~~v~I~Y~S~t------Gnte~~A~~l~~~l~~~g~~v~~~~l~~~-~~----~~l~~~~~vi~~~sT~g~G~~p~~~~   74 (628)
                      ..+|+|+.||--      ++|..+|+.+.+.+++.|.+++++++.+- +.    +.+...|.|||++|.| .+.+|.-++
T Consensus        12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~~P~y-~~s~pa~LK   90 (204)
T 2amj_A           12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGW-WMGAPWTVK   90 (204)
T ss_dssp             CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEEEECB-TTBCCHHHH
T ss_pred             CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEECCcc-ccCCCHHHH
Confidence            468999999988      99999999999999988999999999752 21    2345889999999999 999999999


Q ss_pred             HHHHHHHhcc-------------------CcccccCCcEEEEEecCCcChhHH------------HHHHHHHHHHHHhcC
Q 006868           75 VFWRFLLQKS-------------------LSKQWLEGVRYAVFGLGDSGYQKF------------NFVAKKLDNRLLDLG  123 (628)
Q Consensus        75 ~F~~~L~~~~-------------------~~~~~l~~~~~aVfGlGds~y~~f------------~~a~~~l~~~L~~lG  123 (628)
                      .|++++....                   -+...++|++++++.........|            ..+...+...|.-+|
T Consensus        91 ~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~~~l~~l~~~l~~~G  170 (204)
T 2amj_A           91 KYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLG  170 (204)
T ss_dssp             HHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHHHHTHHHHHHHHHTT
T ss_pred             HHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCHHHHHHHHHHHHHHcC
Confidence            9999764321                   022458899999988754432222            122234677888899


Q ss_pred             CeEeecceeeeCCCCCCchhhHHHHHHH
Q 006868          124 ATAVVERGLGDDQHPSGYEGALDPWMRS  151 (628)
Q Consensus       124 a~~v~~~~~~d~~~~~g~~~~~~~W~~~  151 (628)
                      ++.+.+....+.......+..++++.+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (204)
T 2amj_A          171 MEPLPTFIANDVIKMPDVPRYTEEYRKH  198 (204)
T ss_dssp             CEECCCEEECSTTTSCCTTTHHHHHHHH
T ss_pred             CeecceEEEeCCCCcHHHHHHHHHHHHH
Confidence            9977544333222111234444444443

>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}

Probab=98.23  E-value=6.1e-06  Score=80.38  Aligned_cols=148  Identities=12%  Similarity=0.120  Sum_probs=106.2

Q ss_pred             CCcEEEEEECCc----chHHHHHHHHHHHHHhC--CCCcEEeeCCCCCcc------------------------------
Q 006868            6 RNKLLILYASQT----GNALDAAERIGRESERR--GCPVVVRPVDDYDAR------------------------------   49 (628)
Q Consensus         6 ~~~v~I~Y~S~t----Gnte~~A~~l~~~l~~~--g~~v~~~~l~~~~~~------------------------------   49 (628)
                      ||+|+|++||-.    ++|.++|+.+.+.+++.  |.+++++++.+.+..                              
T Consensus         4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (211)
T 3p0r_A            4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVA   83 (211)
T ss_dssp             CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHH
Confidence            689999999955    89999999999999987  888999988653310                              


Q ss_pred             -----CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcChhH-----HHHH
Q 006868           50 -----CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGYQK-----FNFV  111 (628)
Q Consensus        50 -----~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~y~~-----f~~a  111 (628)
                           ++...|.|||++|.| .+.+|..++.|++++.....        +...++|+++.++..-...|..     +..+
T Consensus        84 ~~~~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~  162 (211)
T 3p0r_A           84 DKYLNQFLEADKVVFGFPLW-NLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMA  162 (211)
T ss_dssp             HHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBS
T ss_pred             HHHHHHHHhCCEEEEEcChh-cccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHH
Confidence                 133689999999999 99999999999999854321        2335889999988763333532     2334


Q ss_pred             HHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868          112 AKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH  157 (628)
Q Consensus       112 ~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~  157 (628)
                      ...+...|.-+|++.+.. ..+.....  ..+.-++|+++..+.+.
T Consensus       163 ~~~l~~~l~~~G~~~v~~-i~~~g~~~--~~~~~~~~l~~a~~~~~  205 (211)
T 3p0r_A          163 VKYVASMMGFFGATNMET-VVIEGHNQ--FPDKAEEIITAGLEEAA  205 (211)
T ss_dssp             HHHHHHHHHHTTCCSCEE-EEEECTTT--SGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeeeE-EEEecccc--CchHHHHHHHHHHHHHH
Confidence            567788888899987643 33332211  23466778777666554

>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}

Probab=98.23  E-value=1.5e-05  Score=76.19  Aligned_cols=119  Identities=13%  Similarity=0.150  Sum_probs=89.3

Q ss_pred             CCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc-----------------CCCCCCeEEEEEecCCC
Q 006868            6 RNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDAR-----------------CLPEEDTVIFVVSTTGQ   66 (628)
Q Consensus         6 ~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~-----------------~l~~~~~vi~~~sT~g~   66 (628)
                      +++|+|+.||.  ...+.++|+.+++.+. .|++++++++.+++.-                 .+...|.+||++|.| +
T Consensus         2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY-n   79 (190)
T 3u7r_A            2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAE-GRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY-N   79 (190)
T ss_dssp             CEEEEEEESCCSTTCHHHHHHHHHHHHHT-TTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB-T
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHhcc-CCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh-c
Confidence            46799999994  5568899999887664 5788888888765321                 123789999999999 9


Q ss_pred             CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868           67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV  128 (628)
Q Consensus        67 G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~  128 (628)
                      |..|.-.+.|++|+.+.. ....+.||.++++|.+-...+.. .+...+...|..+|+..+.
T Consensus        80 ~s~pg~LKn~iDwlsr~~-~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~~  139 (190)
T 3u7r_A           80 RSYPGMIKNAIDWATRPY-GQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMMS  139 (190)
T ss_dssp             TBCCHHHHHHHHHHHCST-TCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEECC
T ss_pred             ccCCHHHHHHHHHhcccc-cCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEcc
Confidence            999999999999996531 23458999999998643333322 3456688888999998763

>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...

Probab=98.16  E-value=6.6e-06  Score=81.13  Aligned_cols=151  Identities=21%  Similarity=0.162  Sum_probs=106.0

Q ss_pred             CcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCc-----------------------------------c
Q 006868            7 NKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDA-----------------------------------R   49 (628)
Q Consensus         7 ~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~-----------------------------------~   49 (628)
                      |+|+|++||-.  |+|..+|+.+.+.+++.|.+|+++++.+...                                   .
T Consensus         2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d   81 (228)
T 3tem_A            2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLAS   81 (228)
T ss_dssp             CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCH
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcH
Confidence            68999999976  4599999999999998899999999976431                                   0


Q ss_pred             C-------CCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcC---hhH--HH
Q 006868           50 C-------LPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSG---YQK--FN  109 (628)
Q Consensus        50 ~-------l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~---y~~--f~  109 (628)
                      +       +...|.|||++|.| .+.+|.-++.|++++.....        +.+.|+|+++.++......   |..  ++
T Consensus        82 d~~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~g~~  160 (228)
T 3tem_A           82 DITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVN  160 (228)
T ss_dssp             HHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTTSTT
T ss_pred             HHHHHHHHHHhCCEEEEECChh-hcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhcccc
Confidence            0       23689999999999 99999999999999854321        1246899999988664332   422  11


Q ss_pred             HHHHH----HH-HHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhC
Q 006868          110 FVAKK----LD-NRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQID  160 (628)
Q Consensus       110 ~a~~~----l~-~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~  160 (628)
                      ...+.    +. ..|.-+|.+.+-+....+...  ..++...+|++++.+.|....
T Consensus       161 ~~~~~~l~p~~~~~~~~~G~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~  214 (228)
T 3tem_A          161 GDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEI--ASEEERKGMVAAWSQRLQTIW  214 (228)
T ss_dssp             CCHHHHHHHHHCCCCCTTTCEECCCEEECCTTT--SCHHHHHHHHHHHHHHHHTGG
T ss_pred             CCHHHHHHHHHHHHHHhCCceEcCeEEEcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence            11222    21 123347888775554444432  256788899999888887543

>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}

Probab=98.15  E-value=3.2e-05  Score=75.90  Aligned_cols=151  Identities=14%  Similarity=0.091  Sum_probs=105.4

Q ss_pred             cCCCcEEEEEECC-----cchHHHHHHHHHHHHHhC--CC-CcEEeeCCCCCcc--------------------------
Q 006868            4 EKRNKLLILYASQ-----TGNALDAAERIGRESERR--GC-PVVVRPVDDYDAR--------------------------   49 (628)
Q Consensus         4 ~~~~~v~I~Y~S~-----tGnte~~A~~l~~~l~~~--g~-~v~~~~l~~~~~~--------------------------   49 (628)
                      ..||+|+|++||-     .++|.++++.+.+.+++.  |. +++++++.+.+..                          
T Consensus         2 ~~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (223)
T 3u7i_A            2 NAMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKV   81 (223)
T ss_dssp             -CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred             CccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHH
Confidence            3589999999994     589999999999999876  57 8999998754321                          


Q ss_pred             ---------CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------ccccc-CCcEEEEEecCCcChh-----
Q 006868           50 ---------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWL-EGVRYAVFGLGDSGYQ-----  106 (628)
Q Consensus        50 ---------~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l-~~~~~aVfGlGds~y~-----  106 (628)
                               .+...|.|||++|.| .+.+|..++.|++++.....        +...+ .|+++.++......|.     
T Consensus        82 ~d~~~~l~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~  160 (223)
T 3u7i_A           82 TERMSEILQQFKSANTYVIVLPLH-NFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWY  160 (223)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHH
T ss_pred             HHHHHHHHHHHHhCCEEEEEcChh-hccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCcc
Confidence                     112578999999999 99999999999999865321        11346 7899888876333342     


Q ss_pred             -HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868          107 -KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus       107 -~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                       .+..+...+...|.-+|++.+.. ..+........++.+++..+++.+..
T Consensus       161 ~~~~~~~~~l~~~l~~~G~~~~~~-i~~~g~~~~~~~~~~~~a~~~~~~~~  210 (223)
T 3u7i_A          161 TDVEYSHKYLKAMFNFLGIEDYQI-VRAQGTAVLDPTEVLQNAYKEVEEAA  210 (223)
T ss_dssp             HHTCHHHHHHHHHHHHHTCCEEEE-EEECCTTTSCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCCCceeEE-EEEcCccCCCHHHHHHHHHHHHHHHH
Confidence             23345567888888899987743 33332222225566666666654444

>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}

Probab=97.61  E-value=0.0011  Score=67.07  Aligned_cols=154  Identities=17%  Similarity=0.077  Sum_probs=104.1

Q ss_pred             CCCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc---------------------------------
Q 006868            5 KRNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDAR---------------------------------   49 (628)
Q Consensus         5 ~~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~---------------------------------   49 (628)
                      ..|+|+|+||+-  .+.+..+++.+.+.+++.|.+|++++|-+....                                 
T Consensus        21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (280)
T 4gi5_A           21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQS  100 (280)
T ss_dssp             -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSC
T ss_pred             hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCc
Confidence            467899999984  467899999999999999999999998543211                                 


Q ss_pred             --------CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc----------------CcccccCCcEEEEEecCCc--
Q 006868           50 --------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS----------------LSKQWLEGVRYAVFGLGDS--  103 (628)
Q Consensus        50 --------~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~----------------~~~~~l~~~~~aVfGlGds--  103 (628)
                              .+...|.|||++|.| .+.+|.-++.|++......                .+.+.|+|+++.++-.-+.  
T Consensus       101 ~dv~~~~~~l~~aD~iv~~~P~~-w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~~~  179 (280)
T 4gi5_A          101 ADIVAEQEKLLWADTVIFQFPLW-WFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGGWA  179 (280)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSSCG
T ss_pred             HHHHHHHHHHHhCCEEEEEeccc-cccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCCCh
Confidence                    123578999999999 9999999999999875421                1234578888876544332  


Q ss_pred             -ChhH--HHHHHHHHHHHH-----HhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCC
Q 006868          104 -GYQK--FNFVAKKLDNRL-----LDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP  161 (628)
Q Consensus       104 -~y~~--f~~a~~~l~~~L-----~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~  161 (628)
                       .|..  |+.....+-..+     .=+|.+.+-+...-+...  ..++++.+|++++.+.|...+.
T Consensus       180 ~~y~~~g~~~~~~~~l~~~~~~~~~~~Gm~~l~~f~~~~~~~--~~~~~~~~~~~~~~~~L~~l~~  243 (280)
T 4gi5_A          180 EHYSPRGINGPIDDILFPIQHGMLFYPGFEVLPPLVFYRTDK--TDAGQFADQCAALAERLDTLWQ  243 (280)
T ss_dssp             GGGSTTBTTCCHHHHTHHHHCCCCCTTTCEECCCEEECSGGG--CCHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHccccccCCCHHHHHHHHHHHHHHcCCCeECCcEEEecCCC--CCHHHHHHHHHHHHHHHhhhhh
Confidence             2321  222222221111     225888776655433322  2577889999999999876543

>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}

Probab=97.61  E-value=0.00033  Score=66.02  Aligned_cols=146  Identities=11%  Similarity=0.060  Sum_probs=98.3

Q ss_pred             CcEEEEEECCc---chHHHHHHHHHHHHHhCCCCcEEeeCCC-CCc----cCCCCCCeEEEEEecCCCCCCChhHHHHHH
Q 006868            7 NKLLILYASQT---GNALDAAERIGRESERRGCPVVVRPVDD-YDA----RCLPEEDTVIFVVSTTGQGDTPDSMKVFWR   78 (628)
Q Consensus         7 ~~v~I~Y~S~t---Gnte~~A~~l~~~l~~~g~~v~~~~l~~-~~~----~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~   78 (628)
                      |+++|++||-.   +.+.+++....+.    ..++++.++.+ .+.    +.+...|.|||++|.| .+.+|.-++.|++
T Consensus         1 MkiLii~ghP~~~~S~~~~~l~~~~~~----~~~v~v~dL~~~~D~~~~~~~l~~aD~iV~~~P~y-~~~~pa~lK~~iD   75 (177)
T 3ha2_A            1 MQTLIIVAHPELARSNTQPFFKAAIEN----FSNVTWHPLVADFNVEQEQSLLLQNDRIILEFPLY-WYSAPALLKQWMD   75 (177)
T ss_dssp             CCEEEEECCTTTTTCSSHHHHHHHHTT----CTTEEEEECCTTCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHHHHHHH
T ss_pred             CeEEEEEcCCCcccCHHHHHHHHHHhc----CCCEEEEECCCcccHHHHHHHHHhCCEEEEECChh-hccCCHHHHHHHH
Confidence            56999999965   4555555544443    24689999985 221    2345899999999999 9999999999999


Q ss_pred             HHHhccC---cccccCCcEEEEEecCCcC---hhH-------HHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhH
Q 006868           79 FLLQKSL---SKQWLEGVRYAVFGLGDSG---YQK-------FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGAL  145 (628)
Q Consensus        79 ~L~~~~~---~~~~l~~~~~aVfGlGds~---y~~-------f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~  145 (628)
                      ++.....   ..+.++|+++.++......   |..       .....+-+...+.-+|.+.+-+........  ..+++.
T Consensus        76 rv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~--~~~~~~  153 (177)
T 3ha2_A           76 TVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLY--LEPDAQ  153 (177)
T ss_dssp             HHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGG--SCHHHH
T ss_pred             HHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCC--CCHHHH
Confidence            8743210   1235899999988764433   321       233445556677788999875544332221  146788


Q ss_pred             HHHHHHHHHHHHhh
Q 006868          146 DPWMRSLWRRLHQI  159 (628)
Q Consensus       146 ~~W~~~l~~~l~~~  159 (628)
                      ++|+++..+.|...
T Consensus       154 ~~~l~~~~~~l~~~  167 (177)
T 3ha2_A          154 QRLLVAYQQYATNV  167 (177)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHccc
Confidence            99999998888653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.49  E-value=0.0006  Score=73.05  Aligned_cols=154  Identities=14%  Similarity=0.160  Sum_probs=96.5

Q ss_pred             CCccCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc----------cCCCCCCeEEEEEecCCCCCCC
Q 006868            1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA----------RCLPEEDTVIFVVSTTGQGDTP   70 (628)
Q Consensus         1 ~~~~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~----------~~l~~~~~vi~~~sT~g~G~~p   70 (628)
                      |....+|+|+|++||-.+++..+.+.+.+.+.+ ...+++.++.+..+          +.+...|.|||++|.| .+.+|
T Consensus       231 m~~~~~mkiLvi~gspr~~ss~~n~~l~~~~~~-~~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~~~P~y-w~~~P  308 (413)
T 3l9w_A          231 VPRGSSGMILIIYAHPYPHHSHANKRMLEQART-LEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIP  308 (413)
T ss_dssp             ------CCEEEEECCSCGGGCSHHHHHHHHHHT-SSSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEEEEECB-TTBCC
T ss_pred             CCCCCCCCEEEEEECCCcchHHHHHHHHHHHhc-CCCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEEECchh-hccCC
Confidence            444456899999999888776677778877764 35688887732111          1234899999999999 99999


Q ss_pred             hhHHHHHHHHHhccC----cccccCCcEEEEEec-CCc--Chh-----HHHHHHHHHHHHHHhcCCeEeecceeeeCCCC
Q 006868           71 DSMKVFWRFLLQKSL----SKQWLEGVRYAVFGL-GDS--GYQ-----KFNFVAKKLDNRLLDLGATAVVERGLGDDQHP  138 (628)
Q Consensus        71 ~~~~~F~~~L~~~~~----~~~~l~~~~~aVfGl-Gds--~y~-----~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~  138 (628)
                      .-++.|++++.....    ....++|+++.++.. |..  .|.     .|......+...|.-+|++.+-+........ 
T Consensus       309 a~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g~~~-  387 (413)
T 3l9w_A          309 PLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFI-  387 (413)
T ss_dssp             HHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECCSTT-
T ss_pred             HHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcCCCC-
Confidence            999999999854321    122488999887755 332  221     1222346677778889999775443332221 


Q ss_pred             CCchhhHHHHHHHHHHHHHh
Q 006868          139 SGYEGALDPWMRSLWRRLHQ  158 (628)
Q Consensus       139 ~g~~~~~~~W~~~l~~~l~~  158 (628)
                       -.++.+..+.++..+.|.+
T Consensus       388 -~~d~~~~~~~~~~~~~L~~  406 (413)
T 3l9w_A          388 -CDDETLEGQARHYKQRLLE  406 (413)
T ss_dssp             -CCHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHHH
Confidence             1344555555555555543

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=87.33  E-value=0.6  Score=46.31  Aligned_cols=82  Identities=13%  Similarity=0.082  Sum_probs=50.8

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC--CccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY--DARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ   82 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~--~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~   82 (628)
                      .|++|+|+=++.   -+.-|..|.+.|++.|++|++++.+++  +..+|.++|+||+.- +..+.-.+...+.+.++.. 
T Consensus         3 ~m~~vLiV~g~~---~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d-~~~~~l~~~~~~~L~~yV~-   77 (259)
T 3rht_A            3 AMTRVLYCGDTS---LETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSD-YPAERMTAQAIDQLVTMVK-   77 (259)
T ss_dssp             ---CEEEEESSC---TTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEES-CCGGGBCHHHHHHHHHHHH-
T ss_pred             CCceEEEECCCC---chhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcC-CccccCCHHHHHHHHHHHH-
Confidence            478899992222   245677788888899999999998877  346788999888872 2212223334444444442 


Q ss_pred             ccCcccccCCcEEEEEe
Q 006868           83 KSLSKQWLEGVRYAVFG   99 (628)
Q Consensus        83 ~~~~~~~l~~~~~aVfG   99 (628)
                              .|--+.++|
T Consensus        78 --------~GGgLi~~g   86 (259)
T 3rht_A           78 --------AGCGLVMLG   86 (259)
T ss_dssp             --------TTCEEEEEC
T ss_pred             --------hCCeEEEec
Confidence                    255566665

>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}

Probab=81.44  E-value=3.6  Score=35.04  Aligned_cols=57  Identities=14%  Similarity=0.240  Sum_probs=43.2

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCc--EEeeCCCCCccCCCCCCeEEEEEe
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPV--VVRPVDDYDARCLPEEDTVIFVVS   62 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v--~~~~l~~~~~~~l~~~~~vi~~~s   62 (628)
                      .+++|+++=+|--|++.-++.+|.+.+.+.|+.+  ...++.++.. .+.++|++|....
T Consensus        20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~-~~~~~DlIist~~   78 (113)
T 1tvm_A           20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET-YMDGVHLICTTAR   78 (113)
T ss_dssp             SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT-STTSCSEEEESSC
T ss_pred             cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh-ccCCCCEEEECCc
Confidence            4678999999999999999999999999999874  5566666542 3456774444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	628
d1ja1a1	279	b.43.4.1 (A:240-518) NADPH-cytochrome p450 reducta	1e-59
d1f20a1	270	b.43.4.1 (A:963-1232) Neuronal nitric-oxide syntha	6e-56
d1ddga1	221	b.43.4.1 (A:226-446) Sulfite reductase flavoprotei	2e-43
d1ja1a2	177	c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductas	5e-42
d1ja1a3	160	c.25.1.4 (A:519-678) NADPH-cytochrome p450 reducta	4e-41
d1ykga1	146	c.23.5.2 (A:63-208) Sulfite reductase alpha-compon	6e-38
d1tlla2	202	c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FM	1e-35
d1bvyf_	152	c.23.5.1 (F:) FMN-binding domain of the cytochrome	2e-35
d1ddga2	153	c.25.1.4 (A:447-599) Sulfite reductase flavoprotei	2e-33
d1f20a2	165	c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth	7e-32
d1f4pa_	147	c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [	5e-31
d2fcra_	173	c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId:	2e-29
d1yoba1	179	c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelan	6e-29
d1jb9a2	154	c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo	1e-26
d1fnda2	160	c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo	3e-26
d1czna_	169	c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus	3e-23
d1fuea_	163	c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [Tax	3e-22
d1ag9a_	175	c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId:	6e-22
d2bmwa2	162	c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo	1e-21
d2fz5a1	137	c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdeni	5e-21
d1oboa_	169	c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7	3e-20
d1rlja_	135	c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis	4e-19
d5nula_	138	c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii	7e-19
d1vmea1	148	c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755,	2e-15
d1ycga1	149	c.23.5.1 (A:251-399) Nitric oxide reductase C-term	1e-13
d1e5da1	152	c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreduct	1e-12
d1jb9a1	157	b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxi	3e-12
d1a8pa2	158	c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo	5e-12
d1gvha3	143	c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d	1e-09
d1cqxa3	142	c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d	5e-09
d1fdra2	148	c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo	5e-09
d2cnda2	146	c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea	9e-08
d1fnda1	136	b.43.4.2 (A:19-154) Ferredoxin reductase (flavodox	9e-08
d1fnda1	136	b.43.4.2 (A:19-154) Ferredoxin reductase (flavodox	0.001
d1tvca2	141	c.25.1.2 (A:111-251) Methane monooxygenase compone	1e-06
d1krha2	133	c.25.1.2 (A:206-338) Benzoate dioxygenase reductas	2e-06
d1qfja2	135	c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase	2e-06
d1umka2	147	c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma	5e-06
d2bmwa1	133	b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxi	8e-05
d2arka1	184	c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolic	1e-04
d1ep3b2	160	c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase	2e-04
d2piaa2	120	c.25.1.2 (A:104-223) Phthalate dioxygenase reducta	2e-04
d2a5la1	196	c.23.5.8 (A:3-198) Trp repressor binding protein W	0.002
d1ydga_	201	c.23.5.8 (A:) Trp repressor binding protein WrbA {	0.004

>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 279

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  198 bits (505), Expect = 1e-59
 Identities = 62/246 (25%), Positives = 119/246 (48%), Gaps = 12/246 (4%)

Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTF 283
           ++ K      +  N+ L + G+ + + H E +   + I YE GD + + P+ D A V+  
Sbjct: 37  FDAKNPFLAAVTANRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQI 95

Query: 284 IQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVM 343
            +    D D ++++ + + ++       +    P   RT +   +D+T+  PR      +
Sbjct: 96  GEILGADLDVIMSLNNLDEESNKK----HPFPCPTTYRTALTYYLDITN-PPRTNVLYEL 150

Query: 344 SYFATAEHEKERLQYFASPEG--RDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVP 401
           + +A+   E+E L   AS  G  ++    +  + RR +L +L+D+PS++ PID L +L+P
Sbjct: 151 AQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLP 210

Query: 402 PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDP----QQGIYI 457
            L+ R ++I+SS   HPN VH+    V +     R   G+ + WL   +P         +
Sbjct: 211 RLQARYYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALV 270

Query: 458 PAWFQK 463
           P + +K
Sbjct: 271 PMFVRK 276

>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 270

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  188 bits (479), Expect = 6e-56
 Identities = 65/246 (26%), Positives = 115/246 (46%), Gaps = 12/246 (4%)

Query: 221 LSNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEF-VSAAIEYEVGDVLEILPSQDPAA 279
           LSN + K V   +++  Q L    S +           +  ++Y+ GD L + P      
Sbjct: 22  LSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDL 81

Query: 280 VDTFIQRCNLDPDALITVQHKEMKNY------LPDIHKNTTEVPIKLRTFVELTMDVTSA 333
           V+  I+R    P A   V+ + ++        + +    +   P  +    +  +D+T+ 
Sbjct: 82  VNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITT- 140

Query: 334 SPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPI 393
            P     +  +  AT E EK+RL   +  +G  +  ++   +  T++EVLE+FPS+QMP 
Sbjct: 141 PPTPLQLQQFASLATNEKEKQRLLVLS--KGLQEYEEWKWGKNPTMVEVLEEFPSIQMPA 198

Query: 394 DWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK--RKRTGLCSVWLAGLDP 451
             L+  +  L+ R +SISSSP  +P++VHLTV++VS+ T         G+CS WL  +  
Sbjct: 199 TLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQA 258

Query: 452 QQGIYI 457
              +  
Sbjct: 259 DDVVPC 264

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 221

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

 Score =  152 bits (386), Expect = 2e-43
 Identities = 58/242 (23%), Positives = 93/242 (38%), Gaps = 29/242 (11%)

Query: 222 SNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVD 281
           S Y+  A     +  NQ +T   S KDV H E +   + + Y+ GD L +    DPA V 
Sbjct: 4   SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVK 63

Query: 282 TFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFE 341
             ++   L  D  +TV+ K +             +   L+   ELT+            E
Sbjct: 64  ELVELLWLKGDEPVTVEGKTLP------------LNEALQWHFELTV------NTANIVE 105

Query: 342 VMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVP 401
             +    +E     +          D  K       T +  +  F   Q+  + L+ L+ 
Sbjct: 106 NYATLTRSETLLPLVG---------DKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLR 156

Query: 402 PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF 461
           PL  R +SI+SS     N+VH+TV VV +     R R G  S +LA     +   +  + 
Sbjct: 157 PLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVE-EEGEVRVFI 214

Query: 462 QK 463
           + 
Sbjct: 215 EH 216

>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Cytochrome p450 reductase N-terminal domain-like
domain: NADPH-cytochrome p450 reductase, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  147 bits (372), Expect = 5e-42
 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 11/161 (6%)

Query: 1   MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC-----LPEED 55
           M++  R  +++ Y SQTG A + A R+ +++ R G   +    ++YD          ++ 
Sbjct: 11  MKKTGR-NIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKS 69

Query: 56  TVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115
            V+F ++T G+GD  D+ + F+ +L +       L GV++AVFGLG+  Y+ FN + K +
Sbjct: 70  LVVFCMATYGEGDPTDNAQDFYDWLQET---DVDLTGVKFAVFGLGNKTYEHFNAMGKYV 126

Query: 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156
           D RL  LGA  + E GLGDD      E     W    W  +
Sbjct: 127 DQRLEQLGAQRIFELGLGDDDG--NLEEDFITWREQFWPAV 165

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  144 bits (364), Expect = 4e-41
 Identities = 66/166 (39%), Positives = 93/166 (56%), Gaps = 10/166 (6%)

Query: 466 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYREL 523
           LP    + P+I++GPGTG APF GF++ERA     G      + ++GCR   +D+LYRE 
Sbjct: 2   LP-FKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYRE- 59

Query: 524 WLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGS 582
            L+    DG  ++       VAFSR+Q  KVYVQH +    + +W L+    A IYVAG 
Sbjct: 60  ELARFHKDGALTQ-----LNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGD 114

Query: 583 ATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628
           A  M  DV +TF +IV++ G      A +++K L   GRY +  WS
Sbjct: 115 ARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVWS 160

>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Cytochrome p450 reductase N-terminal domain-like
domain: Sulfite reductase alpha-component CysJ N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  135 bits (340), Expect = 6e-38
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 6/148 (4%)

Query: 9   LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGD 68
           + I+ ASQTGNA   AE +  +       V +    DY  + +  E  +I V ST G+G+
Sbjct: 1   ITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGE 60

Query: 69  TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128
            P+      +FL  K   K  LE   +AVF LGD+ Y+ F    K  D++L +LG   ++
Sbjct: 61  PPEEAVALHKFLFSKKAPK--LENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLL 118

Query: 129 ERGLGDDQHPSGYEGALDPWMRSLWRRL 156
           +R   D +    Y+ A   W   +   L
Sbjct: 119 DRVDADVE----YQAAASEWRARVVDAL 142

>d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 202

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Cytochrome p450 reductase N-terminal domain-like
domain: Nitric oxide (NO) synthase FMN domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  130 bits (328), Expect = 1e-35
 Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 46/208 (22%)

Query: 5   KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTT 64
           KR K  ILYA++TG +   A+ +     +         +++YD   L  E  V+ V ST 
Sbjct: 2   KRVKATILYATETGKSQAYAKTLCEIF-KHAFDAKAMSMEEYDIVHLEHEALVLVVTSTF 60

Query: 65  GQGDTPDSMKVFWRFLLQKSLSKQ------------------------------------ 88
           G GD P++ + F   L++                                          
Sbjct: 61  GNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFE 120

Query: 89  ---WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGAL 145
               L  VR++VFGLG   Y  F      +D  L +LG   +++   GD+    G E A 
Sbjct: 121 STGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDEL--CGQEEAF 178

Query: 146 DPWMRSLWRRLHQIDPSFFPQGPDHVIE 173
             W + +++    +    F  G D  IE
Sbjct: 179 RTWAKKVFKAACDV----FCVGDDVNIE 202

>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} Length = 152

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: FMN-binding domain of the cytochrome P450bm-3
species: Bacillus megaterium [TaxId: 1404]

 Score =  128 bits (323), Expect = 2e-35
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 7/150 (4%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
            LL+LY S  G A   A  +   +  +G    V  +D +    LP E   + +V+ +  G
Sbjct: 3   PLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAG-NLPREG-AVLIVTASYNG 60

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNF-VAKKLDNRLLDLGATA 126
             PD+ K F  +L     S   ++GVRY+VFG GD  +      V   +D  L   GA  
Sbjct: 61  HPPDNAKQFVDWL--DQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAEN 118

Query: 127 VVERGLGDDQHPSGYEGALDPWMRSLWRRL 156
           + +RG  D      +EG  + W   +W  +
Sbjct: 119 IADRGEADASD--DFEGTYEEWREHMWSDV 146

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

 Score =  123 bits (308), Expect = 2e-33
 Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 9/162 (5%)

Query: 466 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWL 525
           LP   P  P+I+IGPGTG APFR F+++RA   +  P    +FF      +DFLY+  W 
Sbjct: 1   LP-ANPETPVIMIGPGTGIAPFRAFMQQRAADEA--PGKNWLFFGNPHFTEDFLYQVEWQ 57

Query: 526 SHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATK 585
            + + +GV +        +A+SR Q +KVYVQ K+ EQ   +W  +   A IYV G A +
Sbjct: 58  RY-VKEGVLTR-----IDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANR 111

Query: 586 MPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
           M  DV     E++++ G    ++A  +L  L+   RY  + +
Sbjct: 112 MAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 153

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  119 bits (298), Expect = 7e-32
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 13/163 (7%)

Query: 471 PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAP---IIFFFGCRNEDDFLYRELWLSH 527
           P VP IL+GPGTG APFR F ++R          P   ++ F   +++ D +YRE  L  
Sbjct: 8   PQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQA 67

Query: 528 SLNDGVFSEAKGGGFYVAFSRKQPQ-KVYVQHKMLEQSQRI--WNLLLSKASIYVAGSAT 584
                          Y A+SR+  + K YVQ  + EQ        L      IYV G   
Sbjct: 68  KNKGVFRE------LYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV- 120

Query: 585 KMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
            M +DV    + I++++G+ S + A  ++  L+   RYH + +
Sbjct: 121 TMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 163

>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Desulfovibrio vulgaris [TaxId: 881]

 Score =  116 bits (290), Expect = 5e-31
 Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 3/149 (2%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K LI+Y S TGN    AE I RE    G  V  R     +A  L E   ++ +  +T   
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           D+ +    F       SL +   +G + A FG GDS ++ F      ++ +L +LGA  V
Sbjct: 62  DSIELQDDFIPL--FDSLEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIV 119

Query: 128 VERGLGDDQHPSGYEGALDPWMRSLWRRL 156
            + GL  D  P      +  W   +   +
Sbjct: 120 QD-GLRIDGDPRAARDDIVGWAHDVRGAI 147

>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]} Length = 173

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Chondrus crispus [TaxId: 2769]

 Score =  112 bits (282), Expect = 2e-29
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 24/172 (13%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+ I +++ TGN  + A+ IG+    +     +   D  D + L + D +     T   G
Sbjct: 1   KIGIFFSTSTGNTTEVADFIGKTLGAKAD-APIDVDDVTDPQALKDYDLLFLGAPTWNTG 59

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFV--AKKLDNRLLDLGAT 125
              +     W   L   L +  ++ +  A+FGLGD+     NF    +++ +     GA 
Sbjct: 60  ADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAK 119

Query: 126 AVVER---------------------GLGDDQHPSGYEGALDPWMRSLWRRL 156
            V                         L         E  +  W+ ++    
Sbjct: 120 PVGFSNPDDYDYEESKSVRDGKFLGLPLDMVNDQIPMEKRVAGWVEAVVSET 171

>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Azotobacter vinelandii [TaxId: 354]

 Score =  111 bits (278), Expect = 6e-29
 Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 27/172 (15%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+ + + S TG     A+ I +  +          V+   A    +   +I    T G+G
Sbjct: 2   KIGLFFGSNTGKTRKVAKSIKKRFDDET-MSDALNVNRVSAEDFAQYQFLILGTPTLGEG 60

Query: 68  DTPDSMKVFWRFLLQ---KSLSKQWLEGVRYAVFGLGDSGYQKFNFV--AKKLDNRLLDL 122
           + P           +     +      G   A+FGLGD      N++    +L +   D 
Sbjct: 61  ELPGLSSDAENESWEEFLPKIEGLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDR 120

Query: 123 GATAVVER---------------------GLGDDQHPSGYEGALDPWMRSLW 153
           GA  V                         L  D      +  +  W+  + 
Sbjct: 121 GAKIVGSWSTDGYEFESSEAVVDGKFVGLALDLDNQSGKTDERVAAWLAQIA 172

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score =  104 bits (259), Expect = 1e-26
 Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 16/163 (9%)

Query: 471 PSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNEDDFLYRELWLSHS 528
           P+   I+I  GTG APFRG++    ++             F G  N D  LY E + S+ 
Sbjct: 2   PNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYL 61

Query: 529 LNDGVFSEAKGGGFYVAFSRKQPQ----KVYVQHKMLEQSQRIWNLLLSKASIYVAGSAT 584
                        +  A SR+Q      K+YVQ K+ E S  I+ LL   A IY  G   
Sbjct: 62  KQYPDNFR-----YDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKG 116

Query: 585 KMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
            MP  +  T +++  + GE    S    L  L++  ++HVE +
Sbjct: 117 MMP-GIQDTLKKVAERRGE----SWDQKLAQLKKNKQWHVEVY 154

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  103 bits (256), Expect = 3e-26
 Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 10/165 (6%)

Query: 466 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAP--IIFFFGCRNEDDFLYREL 523
           +P   P+  +I++G GTG APFR F+ +   +             F G       LY+E 
Sbjct: 3   MP-KDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEE 61

Query: 524 WLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGS 582
           +          +           + ++ +K+Y+Q +M + +  +W +L      +Y+ G 
Sbjct: 62  FEKM-KEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL 120

Query: 583 ATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
              M   +      + + EG         + + L++A +++VE +
Sbjct: 121 K-GMEKGIDDIMVSLAAAEGI----DWIEYKRQLKKAEQWNVEVY 160

>d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Synechococcus elongatus PCC 7942 [TaxId: 1140]

 Score = 94.7 bits (235), Expect = 3e-23
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 8/132 (6%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+ + Y +QTG     AE I +E       V +  + + DA  L   D +I    T   G
Sbjct: 2   KIGLFYGTQTGVTQTIAESIQQEFGGESI-VDLNDIANADASDLNAYDYLIIGCPTWNVG 60

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAV--FGLGDSGYQKFNFVAKKLDNRLLDLGAT 125
           +     +  +       L     +G + A    G        F      L+ ++  LG+ 
Sbjct: 61  ELQSDWEGIYD-----DLDSVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQ 115

Query: 126 AVVERGLGDDQH 137
            V    +     
Sbjct: 116 TVGYWPIEGYDF 127

>d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Helicobacter pylori [TaxId: 210]

 Score = 91.7 bits (227), Expect = 3e-22
 Identities = 27/167 (16%), Positives = 43/167 (25%), Gaps = 30/167 (17%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+ I + + +GNA   AE+I +          V  V             VI V  T G G
Sbjct: 2   KIGIFFGTDSGNAEAIAEKISKA----IGNAEVVDVAKASKEQFNGFTKVILVAPTAGAG 57

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127
           D     + F       +L           + GLGD       F                V
Sbjct: 58  DLQTDWEDFLG-----TLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKAGKVV 112

Query: 128 VER---------------------GLGDDQHPSGYEGALDPWMRSLW 153
            +                       + +D      +  +  W+  + 
Sbjct: 113 GQTSTDGYHFAASKAVEGGKFVGLVIDEDNQDDLTDERIAKWVEQVR 159

>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]} Length = 175

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Escherichia coli [TaxId: 562]

 Score = 90.9 bits (225), Expect = 6e-22
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 31/171 (18%)

Query: 11  ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP 70
           I + S TGN  + A+ I ++  +    V    +       L   D ++  + T   G+  
Sbjct: 5   IFFGSDTGNTENIAKMIQKQLGKDVADVH--DIAKSSKEDLEAYDILLLGIPTWYYGEAQ 62

Query: 71  DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFV--AKKLDNRLLDLGATAVV 128
                F+      +L +    G   A+FG GD       F      + + +   GAT V 
Sbjct: 63  CDWDDFFP-----TLEEIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVG 117

Query: 129 ER----------------------GLGDDQHPSGYEGALDPWMRSLWRRLH 157
                                    + +D+ P      ++ W++ +   LH
Sbjct: 118 HWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELH 168

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 90.0 bits (222), Expect = 1e-21
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 22/173 (12%)

Query: 466 LPRPPPSVPLILIGPGTGCAPFRGFVEER------AIQSSSGPAAPIIFFFGCRNEDDFL 519
           LP   P   +I++  GTG  P R ++         A              FG     + L
Sbjct: 1   LP-DDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNIL 59

Query: 520 YRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ----KVYVQHKMLEQSQRIWNL-LLSK 574
           Y+E                      A SR+Q      ++Y+Q ++ E + ++W L    K
Sbjct: 60  YKEELEEIQQKYPDNFR-----LTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQK 114

Query: 575 ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
              Y+ G    M   + +      +KEG     + +++ K L++AGR+HVE +
Sbjct: 115 THTYICGPP-PMEEGIDAALSAAAAKEGV----TWSDYQKDLKKAGRWHVETY 162

>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Megasphaera elsdenii [TaxId: 907]

 Score = 87.1 bits (215), Expect = 5e-21
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 8/121 (6%)

Query: 10  LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDT 69
            I+Y S TGN    A  I    +  G  V     +D +   +  +D ++      G  + 
Sbjct: 3   EIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEEL 62

Query: 70  PDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129
            DS+   +   L   L      G +  +FG    G  ++         R  D GAT +  
Sbjct: 63  EDSVVEPFFTDLAPKLK-----GKKVGLFGSYGWGSGEW---MDAWKQRTEDTGATVIGT 114

Query: 130 R 130
            
Sbjct: 115 A 115

>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Anabaena, pcc 7119 and 7120 [TaxId: 1163]

 Score = 85.9 bits (212), Expect = 3e-20
 Identities = 27/132 (20%), Positives = 41/132 (31%), Gaps = 9/132 (6%)

Query: 8   KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG 67
           K+ + Y +QTG     AE I  E       V +  V   +   L +   +I    T   G
Sbjct: 3   KIGLFYGTQTGKTESVAEIIRDEFGNDV--VTLHDVSQAEVTDLNDYQYLIIGCPTLNIG 60

Query: 68  DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVA--KKLDNRLLDLGAT 125
           +     +  +  L     +     G   A FG GD      NF      L+ ++   G  
Sbjct: 61  ELQSDWEGLYSELDDVDFN-----GKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGK 115

Query: 126 AVVERGLGDDQH 137
            V          
Sbjct: 116 TVGYWSTDGYDF 127

>d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavoprotein NrdI
domain: Flavoprotein NrdI
species: Bacillus subtilis [TaxId: 1423]

 Score = 81.5 bits (201), Expect = 4e-19
 Identities = 20/156 (12%), Positives = 40/156 (25%), Gaps = 29/156 (18%)

Query: 4   EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVST 63
           +    + I++ S+TGN      + G +  R+                   +   + V  T
Sbjct: 6   QSNAMVQIIFDSKTGNVQRFVNKTGFQQIRKVDE------------MDHVDTPFVLVTYT 53

Query: 64  TGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDL 122
           T  G  P S + F           +    +   V   G+  +   F   A  +  +    
Sbjct: 54  TNFGQVPASTQSFL----------EKYAHLLLGVAASGNKVWGDNFAKSADTISRQYQVP 103

Query: 123 GATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ 158
                   G   D             +  +  +   
Sbjct: 104 ILHKFELSGTSKD------VELFTQEVERVVTKSSA 133

>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} Length = 138

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 80.9 bits (199), Expect = 7e-19
 Identities = 28/120 (23%), Positives = 42/120 (35%), Gaps = 8/120 (6%)

Query: 11  ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP 70
           I+Y S TGN    AE I +     G  V    V D +   L  ED +I   S        
Sbjct: 3   IVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLE 62

Query: 71  DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130
           +S   F  F+ + S      +   +  +G GD  +       +  + R+   G   V   
Sbjct: 63  ESE--FEPFIEEISTKISGKKVALFGSYGWGDGKW------MRDFEERMNGYGCVVVETP 114

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 71.4 bits (174), Expect = 2e-15
 Identities = 20/132 (15%), Positives = 41/132 (31%), Gaps = 17/132 (12%)

Query: 5   KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA-------RCLPEEDTV 57
           K+ K+ ++Y S  G   +  ++     + +G   VV    D +        + +P+ + +
Sbjct: 2   KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEAL 61

Query: 58  IFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDN 117
           IF VST      P              +  +        VFG     +       +    
Sbjct: 62  IFGVSTYEAEIHPLMRFTLLE------IIDKANYEKPVLVFG----VHGWAPSAERTAGE 111

Query: 118 RLLDLGATAVVE 129
            L +     +  
Sbjct: 112 LLKETKFRILSF 123

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

 Score = 66.3 bits (161), Expect = 1e-13
 Identities = 24/140 (17%), Positives = 39/140 (27%), Gaps = 12/140 (8%)

Query: 6   RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---DARCLPEEDTVIFVVS 62
           + K +I Y +   +    A  +       GC V +  +      D      +   + V S
Sbjct: 2   KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGS 61

Query: 63  TTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122
            T   D    +      L+         +      FG     Y       K L+ RL   
Sbjct: 62  PTINNDILPVVSPLLDDLVGL-----RPKNKVGLAFG----AYGWGGGAQKILEERLKAA 112

Query: 123 GATAVVERGLGDDQHPSGYE 142
               + E G      P G +
Sbjct: 113 KIELIAEPGPTVQWVPRGED 132

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} Length = 152

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

 Score = 63.6 bits (154), Expect = 1e-12
 Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 15/137 (10%)

Query: 7   NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA---RCLPEEDTVIFVVST 63
           NK++I Y S   +    A  +       GC V +                +   + V S 
Sbjct: 3   NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSP 62

Query: 64  TGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDL 122
           T        +    +++          +      FG  G SG        K L   L  +
Sbjct: 63  THNNGILPYVAGTLQYIKGL-----RPQNKIGGAFGSFGWSGES-----TKVLAEWLTGM 112

Query: 123 GATAVVERGLGDDQHPS 139
           G   +    +     P+
Sbjct: 113 GFD-MPATPVKVKNVPT 128

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 157

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score = 62.7 bits (152), Expect = 3e-12
 Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 7/81 (8%)

Query: 384 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-------R 436
                V  P +   +   P   R +SI+S+              V     Y         
Sbjct: 64  GQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDP 123

Query: 437 KRTGLCSVWLAGLDPQQGIYI 457
            + G+CS +L    P   I +
Sbjct: 124 SKNGVCSNFLCNSKPGDKIQL 144

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

 Score = 61.9 bits (149), Expect = 5e-12
 Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 23/165 (13%)

Query: 471 PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN 530
           P   L ++  GTG APF   +++  +         ++   G R  ++  Y++    H   
Sbjct: 6   PGKHLYMLSTGTGLAPFMSLIQDPEVY---ERFEKVVLIHGVRQVNELAYQQFITEHLPQ 62

Query: 531 DGVFSEAKGGGFYVAFSRKQ-------PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSA 583
              F EA         +  +            ++   L +   +  +        + GS 
Sbjct: 63  SEYFGEAVKEKLIYYPTVTRESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICGSP 122

Query: 584 TKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVE-AW 627
             M  +     +    K      +            G Y +E A+
Sbjct: 123 -SMLDESCEVLDGFGLKISPRMGE-----------PGDYLIERAF 155

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 54.9 bits (131), Expect = 1e-09
 Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 6/123 (4%)

Query: 474 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGV 533
           P+ LI  G G  P    ++  A     G  A + +F    N D   + +       +   
Sbjct: 8   PVTLISAGVGQTPMLAMLDTLAKA---GHTAQVNWFHAAENGDVHAFADEVKELGQSLPR 64

Query: 534 FSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWST 593
           F+      +Y   S     K     + L    ++          +               
Sbjct: 65  FTAHT---WYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQ 121

Query: 594 FEE 596
             +
Sbjct: 122 LVD 124

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 53.0 bits (126), Expect = 5e-09
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 471 PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN 530
              P++LI  G G  P    ++         P   ++F  G RN      R+     +  
Sbjct: 4   AKTPIVLISGGVGLTPMVSMLKVAL----QAPPRQVVFVHGARNSAVHAMRDRLREAAKT 59

Query: 531 DGVFSEAKGGGFYVAFSRKQPQKV----YVQHKMLEQSQRIWNLLLSKASIYVAGSATKM 586
                       +V + +  P+ V    Y    +++  Q   ++LL  A  Y+ G    M
Sbjct: 60  YENLD------LFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPIPFM 113

Query: 587 PS 588
             
Sbjct: 114 RM 115

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

 Score = 53.1 bits (126), Expect = 5e-09
 Identities = 18/158 (11%), Positives = 35/158 (22%), Gaps = 14/158 (8%)

Query: 470 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSL 529
           P    L ++  GT   P+   +              ++     R   D  Y  L      
Sbjct: 4   PHCETLWMLATGTAIGPYLSILRLGKDL---DRFKNLVLVHAARYAADLSYLPLMQELEK 60

Query: 530 NDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSD 589
                   +        +     ++    +  E    I   +  + S  +     +M  D
Sbjct: 61  RYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRD 120

Query: 590 VWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627
                +E         R             G    E +
Sbjct: 121 TQQLLKETRQMTKHLRRR-----------PGHMTAEHY 147

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

 Score = 49.6 bits (117), Expect = 9e-08
 Identities = 17/134 (12%), Positives = 40/134 (29%), Gaps = 8/134 (5%)

Query: 467 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLS 526
            +   +  L +I  G+G  P    ++   ++        +   +  R EDD L R+    
Sbjct: 7   GKQRNARRLAMICGGSGITPMYQIIQA-VLRDQPEDHTEMHLVYANRTEDDILLRDELDR 65

Query: 527 HSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKM---LEQSQRIWNLLLSKASIYVAGSA 583
            +       +     +YV    K+P++ +            +               G  
Sbjct: 66  WAAEYPDRLK----VWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPP 121

Query: 584 TKMPSDVWSTFEEI 597
             +   +    E++
Sbjct: 122 PMIQFAISPNLEKM 135

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 136

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 49.3 bits (117), Expect = 9e-08
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 391 MPIDWLVQLVP-------PLKTRAFSISSSPLAHP---NQVHLTVSVVSWTTPYKRKRTG 440
                +  +         P K R +SI+SS L        V L V  + +T        G
Sbjct: 53  REGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKG 112

Query: 441 LCSVWLAGLDPQQGIYI 457
           +CS +L  L P   + +
Sbjct: 113 VCSNFLCDLKPGAEVKL 129

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 136

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 1/70 (1%)

Query: 224 YNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTF 283
           +  K     + + N  +T   +  +  H  F      I Y  G  + ++P  +       
Sbjct: 14  FKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGEDKNGKPH 72

Query: 284 IQRCNLDPDA 293
             R      +
Sbjct: 73  KLRLYSIASS 82

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 17/129 (13%), Positives = 30/129 (23%), Gaps = 10/129 (7%)

Query: 468 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH 527
           +     P   +  GTG AP    V +               +FG   E +  Y +   S 
Sbjct: 4   KERGMAPRYFVAGGTGLAPVVSMVRQMQ---EWTAPNETRIYFGVNTEPELFYIDELKSL 60

Query: 528 SLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMP 587
             +    +                     Q   ++  +       +   IY+ G    M 
Sbjct: 61  ERSMRNLT------VKACVWHPSGDWEGEQGSPIDALREDLESSDANPDIYLCGPP-GMI 113

Query: 588 SDVWSTFEE 596
                    
Sbjct: 114 DAACELVRS 122

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 12/123 (9%)

Query: 474 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGV 533
           P++++  GTG APF   ++    +   G   P+   FG   + D +  E   +       
Sbjct: 7   PVLMLAGGTGIAPFLSMLQVLEQK---GSEHPVRLVFGVTQDCDLVALEQLDALQQKLPW 63

Query: 534 FSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWST 593
           F              +  +K YV   +                +Y+ G    M   V S 
Sbjct: 64  FEYRT---VVAHAESQHERKGYVTGHIEYDWLNGGE-----VDVYLCGPV-PMVEAVRSW 114

Query: 594 FEE 596
            + 
Sbjct: 115 LDT 117

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 468 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELW 524
           R     P+ILI  GTG +  R  +       +  P   I  ++G R E         
Sbjct: 1   RDDEERPMILIAGGTGFSYARSILLTAL---ARNPNRDITIYWGGREEQHLYDLCEL 54

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 13/143 (9%)

Query: 463 KGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 522
           K S P       + +I  GTG  P    +  RAI             F  + E D L R 
Sbjct: 9   KKSNPIIRTVKSVGMIAGGTGITPMLQVI--RAIMKDPDDHTVCHLLFANQTEKDILLRP 66

Query: 523 LWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLL---LSKASIYV 579
                              F + ++  +  + +   +     + I + L     +  + +
Sbjct: 67  ELEELRNKHSAR-------FKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLM 119

Query: 580 AGSATKMPSDVWSTFEEI-VSKE 601
            G    +        + +    E
Sbjct: 120 CGPPPMIQYACLPNLDHVGHPTE 142

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 133

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 385 DFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRK----RTG 440
               +  P   + +   P K R +SI+S+              V        +      G
Sbjct: 50  QSIGIIPP--GVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYG 107

Query: 441 LCSVWLAGLDPQQGIYI 457
           +CS +L  ++P   + I
Sbjct: 108 VCSTYLTHIEPGSEVKI 124

>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Flavodoxin FldA
species: Aquifex aeolicus [TaxId: 63363]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 4/137 (2%)

Query: 8   KLLILYASQTGNALDAAERIGRESERR-GCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQ 66
           K+L++Y ++TGN    AE +   +    G  V ++ VD+            + V S T  
Sbjct: 3   KVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKE-DVLWADGLAVGSPTNM 61

Query: 67  GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126
           G     MK F+  +L     +  ++G     F                +   L++ G   
Sbjct: 62  GLVSWKMKRFFDDVLGDLWGE--IDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLV 119

Query: 127 VVERGLGDDQHPSGYEG 143
                    +    Y  
Sbjct: 120 FGVTDYVGKKFTLHYGA 136

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 5/51 (9%)

Query: 474 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELW 524
            +++IG G G  P     ++            +    G  +E+  +    +
Sbjct: 10  KILIIGGGIGVPPLYELAKQLEKTG-----CQMTILLGFASENVKILENEF 55

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 4/68 (5%)

Query: 467 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLS 526
           P    +   IL+  G G  P      +   +           ++  R+ +   + +   S
Sbjct: 3   PLDKRAKSFILVAGGIGITPMLSMARQLRAE----GLRSFRLYYLTRDPEGTAFFDELTS 58

Query: 527 HSLNDGVF 534
                 V 
Sbjct: 59  DEWRSDVK 66

>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 8  KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEED 55
           +L+LY S+ G   + A +I R  E+ G    VR V      C     
Sbjct: 3  YILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAP 50

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} Length = 201

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 8  KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC 50
          KL I++ S TG     A+         G  V +  V +   + 
Sbjct: 4  KLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQD 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	628
d1ja1a1	279	NADPH-cytochrome p450 reductase {Rat (Rattus norve	100.0
d1f20a1	270	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	100.0
d1ddga1	221	Sulfite reductase flavoprotein {Escherichia coli [	100.0
d1ja1a3	160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	100.0
d1ykga1	146	Sulfite reductase alpha-component CysJ N-terminal	100.0
d1ja1a2	177	NADPH-cytochrome p450 reductase, N-terminal domain	100.0
d1tlla2	202	Nitric oxide (NO) synthase FMN domain {Rat (Rattus	99.97
d1bvyf_	152	FMN-binding domain of the cytochrome P450bm-3 {Bac	99.97
d1f20a2	165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	99.97
d1ddga2	153	Sulfite reductase flavoprotein {Escherichia coli [	99.97
d1f4pa_	147	Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}	99.96
d1jb9a2	154	Ferredoxin reductase (flavodoxin reductase) {Maize	99.95
d1fnda2	160	Ferredoxin reductase (flavodoxin reductase) {Spina	99.95
d2bmwa2	162	Ferredoxin reductase (flavodoxin reductase) {Cyano	99.93
d1czna_	169	Flavodoxin {Synechococcus elongatus PCC 7942 [TaxI	99.93
d2fcra_	173	Flavodoxin {Chondrus crispus [TaxId: 2769]}	99.93
d1yoba1	179	Flavodoxin {Azotobacter vinelandii [TaxId: 354]}	99.92
d1ag9a_	175	Flavodoxin {Escherichia coli [TaxId: 562]}	99.91
d1oboa_	169	Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 11	99.89
d1rlja_	135	Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]	99.85
d2fz5a1	137	Flavodoxin {Megasphaera elsdenii [TaxId: 907]}	99.85
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	99.84
d1fuea_	163	Flavodoxin {Helicobacter pylori [TaxId: 210]}	99.84
d1tvca2	141	Methane monooxygenase component C, MmoC {Methyloco	99.84
d5nula_	138	Flavodoxin {Clostridium beijerinckii [TaxId: 1520]	99.83
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	99.83
d1krha2	133	Benzoate dioxygenase reductase {Acinetobacter sp.	99.81
d1ycga1	149	Nitric oxide reductase C-terminal domain {Moorella	99.8
d1fdra2	148	Ferredoxin reductase (flavodoxin reductase) {Esche	99.77
d1qfja2	135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.77
d1jb9a1	157	Ferredoxin reductase (flavodoxin reductase) N-term	99.75
d1cqxa3	142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	99.72
d1gvha3	143	Flavohemoglobin, C-terminal domain {Escherichia co	99.72
d2piaa2	120	Phthalate dioxygenase reductase {Pseudomonas cepac	99.72
d1umka2	147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.7
d2cnda2	146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	99.67
d1fnda1	136	Ferredoxin reductase (flavodoxin reductase) N-term	99.65
d2arka1	184	Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}	99.6
d2bmwa1	133	Ferredoxin reductase (flavodoxin reductase) N-term	99.58
d1a8pa2	158	Ferredoxin reductase (flavodoxin reductase) {Azoto	99.58
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.46
d1ydga_	201	Trp repressor binding protein WrbA {Deinococcus ra	99.25
d2a5la1	196	Trp repressor binding protein WrbA {Pseudomonas ae	99.22
d1sqsa_	232	Hypothetical protein SP1951 {(Streptococcus pneumo	98.53
d2fzva1	233	Putative arsenical resistance protein {Shigella fl	98.53
d1fdra1	99	Ferredoxin reductase (flavodoxin reductase) N-term	98.51
d1nni1_	171	Azobenzene reductase {Bacillus subtilis [TaxId: 14	98.5
d1t0ia_	185	Hypothetical protein Ylr011wp {Baker's yeast (Sacc	98.45
d1qfja1	97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	98.4
d1a8pa1	99	Ferredoxin reductase (flavodoxin reductase) N-term	98.39
d1rtta_	174	Hypothetical protein PA1204 {Pseudomonas aeruginos	98.31
d1cqxa2	111	Flavohemoglobin, central domain {Alcaligenes eutro	98.31
d2cnda1	114	Nitrate reductase core domain {Corn (Zea mays) [Ta	98.28
d1krha1	100	Benzoate dioxygenase reductase {Acinetobacter sp.	98.27
d1rlia_	179	Hypothetical protein YwqN {Bacillus subtilis [TaxI	98.26
d2piaa1	103	Phthalate dioxygenase reductase {Pseudomonas cepac	98.24
d1tvca1	109	Methane monooxygenase component C, MmoC {Methyloco	98.17
d1gvha2	107	Flavohemoglobin, central domain {Escherichia coli	98.15
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	98.08
d2qwxa1	230	Quinone reductase type 2 (menadione reductase) {Hu	97.97
d1d4aa_	273	NAD(P)H:quinone reductase {Human (Homo sapiens) [T	97.8
d1umka1	124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	97.79
d2z98a1	200	ACP phosphodiesterase AcpD {Escherichia coli [TaxI	97.55
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	87.0

>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-47  Score=388.77  Aligned_cols=233  Identities=28%  Similarity=0.537  Sum_probs=212.6

Q ss_pred             CCcccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccC
Q 006868          226 NKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKN  304 (628)
Q Consensus       226 ~~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~  304 (628)
                      ...++|. +|++|++|++ ++.|+++||+||++++++.|+|||+|+|+|+|+++.|+++|++||+++++.|++.......
T Consensus        38 ~~~nP~~A~v~~n~~L~~-~s~k~~~Hie~dl~~s~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~~~  116 (279)
T d1ja1a1          38 DAKNPFLAAVTANRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEES  116 (279)
T ss_dssp             BTTBCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTTC
T ss_pred             CCCCCEEeEEEEEEEeCC-CCCccEEEEEEEcCCCCceecCCCEEEEEeCCCHHHHHHHHHHcCCCCceEEEeccCCCcc
Confidence            3455677 9999999995 6789999999999988999999999999999999999999999999999999997654322


Q ss_pred             CCCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCc--cCHHHHHHHHHcCCCCHhhH
Q 006868          305 YLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEV  382 (628)
Q Consensus       305 ~~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~--~~~~~~~~~~~~~~~~~~d~  382 (628)
                      ..    ..+++.|+|++++|++|+||++ +|++.||+.||.||+|+.+|++|+.|++.  ++.++|++|+.+.+++++|+
T Consensus       117 ~~----~~p~p~~~tl~~lL~~~~Di~~-~p~k~~l~~La~~a~~~~~k~~L~~l~~~~~~~~~~y~~~~~~~~~~ildl  191 (279)
T d1ja1a1         117 NK----KHPFPCPTTYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAI  191 (279)
T ss_dssp             SC----CCSSSSSEEHHHHHHHTBCCSS-CCCHHHHHHHGGGBCSHHHHHHHHGGGCSSSHHHHHHHHHTTTTTCCHHHH
T ss_pred             cc----ccCCCCchhHHHHHHhhccccC-CCcHHHHHHHHHHcCChHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHH
Confidence            11    1337799999999999999999 99999999999999999999999999875  46788999999999999999


Q ss_pred             hhhCCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCc------e
Q 006868          383 LEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGI------Y  456 (628)
Q Consensus       383 l~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~------~  456 (628)
                      |++||++++|+++|++.+|+++||+|||||||..++++++|||++|+|.+..++.+.|+||+||+++.+  |+      .
T Consensus       192 L~~fps~~~pl~~ll~~lp~L~PR~YSISSSp~~~p~~v~ltv~vV~y~~~~g~~r~GvcS~~L~~l~~--~~~~~~~~~  269 (279)
T d1ja1a1         192 LQDYPSLRPPIDHLCELLPRLQARYYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEP--AGENGGRAL  269 (279)
T ss_dssp             HHHSTTBCCCHHHHHHHSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSEEECHHHHHHHHCCC--CSTTSSCCE
T ss_pred             HhhCcccCCCHHHHHHhCccCCCceeeEecCcccCCCEEEEEEEEEEeecCCCCcccccchHHHhhcCC--CCCcCCceE
Confidence            999999999999999999999999999999998899999999999999999899999999999998887  65      6


Q ss_pred             EEEEeecCCC
Q 006868          457 IPAWFQKGSL  466 (628)
Q Consensus       457 v~i~~~~g~F  466 (628)
                      |+|++++++|
T Consensus       270 vpifir~s~F  279 (279)
T d1ja1a1         270 VPMFVRKSQF  279 (279)
T ss_dssp             EEEEEECCSC
T ss_pred             EEEEEcCCCC
Confidence            9999999887

>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-46  Score=379.32  Aligned_cols=231  Identities=27%  Similarity=0.467  Sum_probs=203.1

Q ss_pred             ccee-eeeeeeecCCCCCCCcEEEEEEEecCC-CCccCCCCEEEEecCCCHHHHHHHHHHcCCCCC--ceEEEeecCccC
Q 006868          229 VCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSA-AIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPD--ALITVQHKEMKN  304 (628)
Q Consensus       229 ~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~--~~v~~~~~~~~~  304 (628)
                      ++|. +|+.|++||.++++|+++||+||++++ +++|+|||+|+|+|.|+++.|+++|++||++++  ..|+++......
T Consensus        29 ~~~~a~v~~~~~L~~~~s~r~t~hield~~g~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~~~~~~~~  108 (270)
T d1f20a1          29 RVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERN  108 (270)
T ss_dssp             CCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEEEEEES
T ss_pred             CcEeeEEEEEEeccCCCCCccEEEEEEEcCCCCCCeEcCCCEEEEEeCCCHHHHHHHHHHhCCCCccCEEEEeeeccccc
Confidence            3566 999999999999999999999999854 799999999999999999999999999999876  556654322211


Q ss_pred             ---C-CCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHh
Q 006868          305 ---Y-LPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVL  380 (628)
Q Consensus       305 ---~-~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~  380 (628)
                         . .++.....+..|+|++++|++|+||++ +|++.||+.||.||+|+.+|++|++|++  |.++|.+|+...+++++
T Consensus       109 ~~~~~~~~~~~~~~~~p~tl~~~l~~~~Di~~-~p~~~~l~~La~~~~~~~ek~~L~~l~~--~~~~~~~~~~~~~~tll  185 (270)
T d1f20a1         109 TALGVISNWKDESRLPPCTIFQAFKYYLDITT-PPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNPTMV  185 (270)
T ss_dssp             SSTTCEEEEEECCSSCSBCHHHHHHHTBCCSS-CCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCCCHH
T ss_pred             ccccccccccccCCCCCccHHHHHHhheeccc-CCCHHHHHHHHHHCCCHHHHHHHHhhcc--cHHHHHHHHhccCCcHH
Confidence               0 110011224468999999999999999 9999999999999999999999999984  78899999999999999


Q ss_pred             hHhhhCCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCC--cccccccHHhhCcCCCCCceEE
Q 006868          381 EVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKR--KRTGLCSVWLAGLDPQQGIYIP  458 (628)
Q Consensus       381 d~l~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~--~~~G~~S~~L~~l~~~~G~~v~  458 (628)
                      |+|++||++++|++.|++.+|+++||+|||||||..++++++|||++|+|.+..++  .+.|+||+||++|++  |++|.
T Consensus       186 dvL~~fps~~~pl~~ll~~lp~L~PR~YSIsSSp~~~p~~v~Ltv~vV~y~~~~~~g~~r~GvcS~~L~~l~~--Gd~v~  263 (270)
T d1f20a1         186 EVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQA--DDVVP  263 (270)
T ss_dssp             HHHHHSTTBCBCHHHHHHHSCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCT--TCEEE
T ss_pred             HHHHhccccCCCHHHHHHhccccccceeEEecCccCCCCEEEEEEEEEEEeccCCCCCeeeeechHHHhcCCC--CCEEE
Confidence            99999999999999999999999999999999998899999999999999987644  578999999999999  99999


Q ss_pred             EEeecC
Q 006868          459 AWFQKG  464 (628)
Q Consensus       459 i~~~~g  464 (628)
                      ++++++
T Consensus       264 v~vr~s  269 (270)
T d1f20a1         264 CFVRGA  269 (270)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999864

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.7e-40  Score=323.74  Aligned_cols=211  Identities=25%  Similarity=0.388  Sum_probs=183.0

Q ss_pred             Ccccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCC
Q 006868          227 KAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNY  305 (628)
Q Consensus       227 ~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~  305 (628)
                      ..++|. +|++|++||+++++++++||+|+++++++.|+|||+|+|+|+|+++.|+++|++|||++++.+++..      
T Consensus         8 ~~~p~~a~v~~n~~Lt~~~~~~~~~hleldl~~~~~~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~~~~------   81 (221)
T d1ddga1           8 KDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEG------   81 (221)
T ss_dssp             TTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEETT------
T ss_pred             CCCCEEEEEEeEEEecCCCCCceEEEEEEEcCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCcccccccCC------
Confidence            455677 9999999999999999999999999779999999999999999999999999999999999988732      


Q ss_pred             CCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhh
Q 006868          306 LPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLED  385 (628)
Q Consensus       306 ~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~  385 (628)
                                .++|++++|++|+||+  .|++.+|+.++.++.++.   .+..+++   .+.+.+|..  ... ++.|.+
T Consensus        82 ----------~~~~l~~~l~~~~di~--~~~~~~l~~~a~~~~~~~---~~~~~~d---~~~~~~~~~--~~~-~~~l~~  140 (221)
T d1ddga1          82 ----------KTLPLNEALQWHFELT--VNTANIVENYATLTRSET---LLPLVGD---KAKLQHYAA--TTP-IVDMVR  140 (221)
T ss_dssp             ----------EEEEHHHHHHHHBCCS--CCCHHHHHHHHHHHTCTT---TGGGTTC---THHHHHHHH--HSC-HHHHHH
T ss_pred             ----------CcccHHHHhccccccc--CCcHHHHHHHHHhcCCHH---HhhccCC---HHHHHHHhc--ccc-hhHHhh
Confidence                      6789999999999998  578999999999998864   2333333   344455553  344 455567


Q ss_pred             CCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecC
Q 006868          386 FPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG  464 (628)
Q Consensus       386 f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g  464 (628)
                      ||++++|++.|++.+|+++||+|||||||..++++++|||++|+|.+. ++.+.|+||+||+ .+++  |++|.|+++++
T Consensus       141 ~~~~~~pl~~ll~~lp~l~PR~YSIsSSp~~~p~~i~ltv~vv~~~~~-~~~r~GvcS~~L~~~l~~--g~~V~v~ir~s  217 (221)
T d1ddga1         141 FSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEE--EGEVRVFIEHN  217 (221)
T ss_dssp             HSCCCCCHHHHHHHSCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCS--SCEEEEEEECC
T ss_pred             cccCCCCHHHHHHhhhccCceeeeeccccccCCCeeeEEEEEEEeeCC-CCccceecHHHHHhhCCC--CCEEEEEEecC
Confidence            999999999999999999999999999998899999999999999875 7788999999997 6999  99999999886


Q ss_pred             -CCC
Q 006868          465 -SLP  467 (628)
Q Consensus       465 -~F~  467 (628)
                       .|+
T Consensus       218 ~~FR  221 (221)
T d1ddga1         218 DNFR  221 (221)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence             575

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.5e-38  Score=291.64  Aligned_cols=156  Identities=41%  Similarity=0.791  Sum_probs=143.1

Q ss_pred             CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEE
Q 006868          467 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFY  543 (628)
Q Consensus       467 ~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~-~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~  543 (628)
                      +|| ++.+|+||||+||||||||||||++......+ ..++++||||||+++ |++|++||+.+.+. +.+.     +++
T Consensus         1 rlP~~~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~~~~g~~~L~~G~R~~~~d~~y~~el~~~~~~-~~~~-----~~~   74 (160)
T d1ja1a3           1 RLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKD-GALT-----QLN   74 (160)
T ss_dssp             CCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHT-TSSS-----EEE
T ss_pred             CcCcCCCCCEEEEEccHhHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCccccHHHHHHHHHHHHc-CCCc-----eeE
Confidence            578 88999999999999999999999987543222 358999999999987 99999999999998 6664     899


Q ss_pred             EEEecCCCCccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCE
Q 006868          544 VAFSRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY  622 (628)
Q Consensus       544 ~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry  622 (628)
                      +|+||++.++.|||+.+.++.+.+++++.+ ++.||||||++.|+++|+++|.+++.+.++++.++|+.|+++|+++|||
T Consensus        75 ~a~Sr~~~~~~yvq~~~~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~l~~~~r~  154 (160)
T d1ja1a3          75 VAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRY  154 (160)
T ss_dssp             EEETTSSSSCCCHHHHHHHTHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSE
T ss_pred             EEeeccccCccccchHHHHHHHHHHHHHhcCCcEEEEeCCCccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCe
Confidence            999999988999999999999999999977 9999999987689999999999999999999999999999999999999


Q ss_pred             EEeecC
Q 006868          623 HVEAWS  628 (628)
Q Consensus       623 ~~dvws  628 (628)
                      ++||||
T Consensus       155 ~~dv~~  160 (160)
T d1ja1a3         155 SLNVWS  160 (160)
T ss_dssp             EEEEEC
T ss_pred             EEeccC
Confidence            999997

>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Cytochrome p450 reductase N-terminal domain-like
domain: Sulfite reductase alpha-component CysJ N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.6e-35  Score=267.34  Aligned_cols=144  Identities=32%  Similarity=0.515  Sum_probs=135.9

Q ss_pred             EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCccc
Q 006868            9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQ   88 (628)
Q Consensus         9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~   88 (628)
                      |+|+|||+|||||++|+.|++.|.+.|+.+++.+++++++.++.+++.+||++||||+|++|+|++.|+++|.....+. 
T Consensus         1 I~I~ygS~tGnae~~A~~l~~~l~~~g~~~~~~~~~~~~~~~l~~~~~~i~~~sT~g~G~~P~~~~~f~~~l~~~~~~~-   79 (146)
T d1ykga1           1 ITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPK-   79 (146)
T ss_dssp             CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTSTTCCC-
T ss_pred             CEEEEECCchHHHHHHHHHHHHHHHCCCCceEeeccccchhhcccccceEEEEeecCCCcCchhHHHHHHHHHcccccc-
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999997654443 


Q ss_pred             ccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHh
Q 006868           89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ  158 (628)
Q Consensus        89 ~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~  158 (628)
                       |+|++|||||+||++|++||.+++.++++|+++||++++|++++|++    .++.+++|.++++++|+.
T Consensus        80 -l~~~~~aVfGlGds~Y~~Fc~~~~~l~~~l~~lGa~~i~~~~~~D~~----~e~~~~~W~~~~~~~L~~  144 (146)
T d1ykga1          80 -LENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVE----YQAAASEWRARVVDALKS  144 (146)
T ss_dssp             -CTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEECTT----CHHHHHHHHHHHHHHHHT
T ss_pred             -cCCCeEEEEcCcchhHHHHHHHHHHHHHHHHHCCCcEeeCceecCCC----CHHHHHHHHHHHHHHHHh
Confidence             89999999999999999999999999999999999999999999864    688999999999999975

>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Cytochrome p450 reductase N-terminal domain-like
domain: NADPH-cytochrome p450 reductase, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.9e-33  Score=265.72  Aligned_cols=151  Identities=33%  Similarity=0.636  Sum_probs=139.7

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCC-----CCCeEEEEEecCCCCCCChhHHHHHHHH
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLP-----EEDTVIFVVSTTGQGDTPDSMKVFWRFL   80 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~-----~~~~vi~~~sT~g~G~~p~~~~~F~~~L   80 (628)
                      .++|+|+|||+|||||++|+.|++.|.+.|+++.++++++++..++.     +++.+||++||||+|++|+|+++|+++|
T Consensus        15 ~k~i~IlygS~tGnae~~A~~l~~~l~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ST~g~G~~P~n~~~F~~~L   94 (177)
T d1ja1a2          15 GRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFYDWL   94 (177)
T ss_dssp             TCCEEEEEECSSSHHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCEEEEEEEEETTTEECGGGHHHHHHH
T ss_pred             CCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeeccccchhhhhhhhccccceEEEEEeccCCCCCCHhHHHHHHHH
Confidence            57899999999999999999999999999999999999998876663     5678999999999999999999999999


Q ss_pred             HhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhC
Q 006868           81 LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQID  160 (628)
Q Consensus        81 ~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~  160 (628)
                      +..+.   .|++++|||||+||++|++||.+++.++++|+++||++++|++++|+.+  +.+++++.|.+++|++|++.+
T Consensus        95 ~~~~~---~l~~~~yaVfGlGds~Y~~Fc~a~~~l~~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~L~~~~  169 (177)
T d1ja1a2          95 QETDV---DLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDG--NLEEDFITWREQFWPAVCEFF  169 (177)
T ss_dssp             HHCCC---CCTTCEEEEEEEECSSSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTT--CHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhccc---cccCceEEEEecCCccHHHHHHHHHHHHHHHHHcCCcEEEcceeecCCC--CcHHHHHHHHHHHHHHHHHHc
Confidence            87542   3899999999999999999999999999999999999999999999874  478899999999999999988


Q ss_pred             C
Q 006868          161 P  161 (628)
Q Consensus       161 ~  161 (628)
                      +
T Consensus       170 ~  170 (177)
T d1ja1a2         170 G  170 (177)
T ss_dssp             T
T ss_pred             C
Confidence            7

>d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Cytochrome p450 reductase N-terminal domain-like
domain: Nitric oxide (NO) synthase FMN domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=6.4e-32  Score=261.52  Aligned_cols=154  Identities=28%  Similarity=0.435  Sum_probs=142.0

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS   84 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~   84 (628)
                      ++.||+|+|||+|||||++|+.|++.+. .|+.+++.+++++++.++.+++.+||++||||+|++|+|++.|+++|.+.+
T Consensus         2 ~~~ki~I~YgS~TG~te~~A~~la~~l~-~~~~~~v~~~~~~~~~~l~~~~~~i~~~sT~g~Ge~p~~~~~f~~~l~~~~   80 (202)
T d1tlla2           2 KRVKATILYATETGKSQAYAKTLCEIFK-HAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMR   80 (202)
T ss_dssp             CSCEEEEEEECSSSHHHHHHHHHHHHHT-TTSEEEEEETTTSCTTSGGGCSEEEEEECCBTTTBCCGGGHHHHHHHHHHT
T ss_pred             CCCcEEEEEECCchHHHHHHHHHHHHHh-CCCCcEEechhhCCHHHhccccceEEeccccCCCCCChhHHHHHHHHHhcc
Confidence            3578999999999999999999999885 699999999999999999999999999999999999999999999997654


Q ss_pred             Cc---------------------------------------ccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCe
Q 006868           85 LS---------------------------------------KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT  125 (628)
Q Consensus        85 ~~---------------------------------------~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~  125 (628)
                      .+                                       ...|+|++|+|||+||++|++||.+++.++++|.++||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~faV~GlGds~y~~Fc~~ak~ld~~l~~LGA~  160 (202)
T d1tlla2          81 HPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGE  160 (202)
T ss_dssp             C-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCE
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccchhcCceeEEEccCcccHHHHhhhHHHHHHHHHhCCCc
Confidence            32                                       225899999999999999999999999999999999999


Q ss_pred             EeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCC
Q 006868          126 AVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP  161 (628)
Q Consensus       126 ~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~  161 (628)
                      +++|++++|++.+  .++.+++|.++||++|.+.++
T Consensus       161 ri~~~g~~D~~~~--~e~~~~~W~~~l~~~l~~~~~  194 (202)
T d1tlla2         161 RILKMREGDELCG--QEEAFRTWAKKVFKAACDVFC  194 (202)
T ss_dssp             ESSCCEEEETTTT--HHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchhccCCCC--cHHHHHHHHHHHHHHHHHHcC
Confidence            9999999998854  799999999999999999987

>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: FMN-binding domain of the cytochrome P450bm-3
species: Bacillus megaterium [TaxId: 1404]

Probab=99.97  E-value=2.8e-31  Score=245.38  Aligned_cols=149  Identities=30%  Similarity=0.534  Sum_probs=132.7

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS   86 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~   86 (628)
                      .+|+|+|||+|||||++|+.|++.|.+.|+.+.+.++++.. .++..+..+||+++| |+|++|+|+.+|+++|.+...+
T Consensus         2 tpi~I~ygS~tGnae~~A~~l~~~l~~~g~~~~v~~~~~~~-~~~~~~~~i~~~stt-~~G~~p~~~~~f~~~l~~~~~~   79 (152)
T d1bvyf_           2 TPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHA-GNLPREGAVLIVTAS-YNGHPPDNAKQFVDWLDQASAD   79 (152)
T ss_dssp             CCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGST-TCCCSSSEEEEEECC-BTTBCCTTTHHHHHHHHTCCSS
T ss_pred             CcEEEEEECCchHHHHHHHHHHHHHHhCCCCceeccchhhh-hhhhhccceEEEecc-ccCCCcccHHHHHHHHHhcchh
Confidence            57999999999999999999999999999999999998754 567777766666555 5899999999999999765432


Q ss_pred             ccccCCcEEEEEecCCcChh-HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCC
Q 006868           87 KQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP  161 (628)
Q Consensus        87 ~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~  161 (628)
                        .+++++|||||+||++|+ +||.+++.++++|+++||++++|++++|+.++  .++.++.|.++||++|.+.++
T Consensus        80 --~~~~~~~aV~GlGds~Y~~~fc~~~~~ld~~l~~lGA~~i~~~~~~D~~~~--~e~~~~~W~~~l~~~L~~~~~  151 (152)
T d1bvyf_          80 --EVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDD--FEGTYEEWREHMWSDVAAYFN  151 (152)
T ss_dssp             --CCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETTSC--HHHHHHHHHHHHHHHHHHHSC
T ss_pred             --hccCceeeeeeccccchhhhhhhHHHHHHHHHHHcCCeEeECceeecCCCC--cHHHHHHHHHHHHHHHHHHcC
Confidence              479999999999999997 79999999999999999999999999998754  899999999999999998876

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=5.2e-31  Score=247.37  Aligned_cols=157  Identities=34%  Similarity=0.653  Sum_probs=135.7

Q ss_pred             CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcC--CCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCC
Q 006868          465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGG  540 (628)
Q Consensus       465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~--~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~  540 (628)
                      +|+|| ++.+|+||||+|||||||+|||+++.....  .....++++|||+|+.. +++|.+|++++.+....+      
T Consensus         1 sF~Lp~~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~------   74 (165)
T d1f20a2           1 SFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFR------   74 (165)
T ss_dssp             TSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEE------
T ss_pred             CCCCCCCCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccHHHHHHHHHHHHHHhcCCce------
Confidence            59999 889999999999999999999999864321  11347889999998877 789999999999884444      


Q ss_pred             cEEEEEecCCC-CccchhhhHHHc-HHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006868          541 GFYVAFSRKQP-QKVYVQHKMLEQ-SQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQ  617 (628)
Q Consensus       541 ~~~~a~Sr~~~-~k~yVqd~l~~~-~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~  617 (628)
                      ++++++||+.+ ..+|+++.+.+. .+.+++.+.+ ++.+|||||+ .|.++|+++|.+++.++++++.++|++++++|+
T Consensus        75 ~~~~~~sr~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~yiCGp~-~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~  153 (165)
T d1f20a2          75 ELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV-TMAADVLKAIQRIMTQQGKLSEEDAGVFISRLR  153 (165)
T ss_dssp             EEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEECH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             EEEEEEeccccCCCCcccchHHHHHHHHHHhhccCCCcEEEEECCc-chHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            89999999765 457888887764 6677777765 8999999998 999999999999999999999999999999999


Q ss_pred             HcCCEEEeecC
Q 006868          618 RAGRYHVEAWS  628 (628)
Q Consensus       618 ~~~Ry~~dvws  628 (628)
                      ++|||++|||.
T Consensus       154 ~~~r~~~ev~~  164 (165)
T d1f20a2         154 DDNRYHEDIFG  164 (165)
T ss_dssp             HTTCEEEEECC
T ss_pred             HCCCEEEeccC
Confidence            99999999995

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2e-30  Score=240.05  Aligned_cols=151  Identities=37%  Similarity=0.686  Sum_probs=138.2

Q ss_pred             CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868          468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVA  545 (628)
Q Consensus       468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a  545 (628)
                      || ++++|+||||+|||||||+|||+++......   .++++|||+|+.. +++|.+|++.+.+. +...     +++++
T Consensus         1 LP~d~~~plvlIa~GtGIaP~~s~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~el~~~~~~-~~~~-----~~~~~   71 (153)
T d1ddga2           1 LPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP---GKNWLFFGNPHFTEDFLYQVEWQRYVKE-GVLT-----RIDLA   71 (153)
T ss_dssp             CCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTCC---SCEEEEEEESCHHHHCTTHHHHHHHHHT-TSCC-----EEEEE
T ss_pred             CCcCCCCCEEEEECchhHHHHHHHHHHHHHhcCC---CceEEeecccCcHHHHHhHHHHHHHHHc-CCCc-----eEEEE
Confidence            57 8899999999999999999999999887654   7888888888776 89999999999998 4443     89999


Q ss_pred             EecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEe
Q 006868          546 FSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVE  625 (628)
Q Consensus       546 ~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~d  625 (628)
                      +||+.....|+++.+..+...+...+..++.+|+||++..|.++|+++|.+++.+.++++.++|++++.+|+++|||++|
T Consensus        72 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yiCG~p~~~~~~v~~~L~~~~~~~~~~~~e~a~~~~~~l~~~gR~~~e  151 (153)
T d1ddga2          72 WSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRD  151 (153)
T ss_dssp             ETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             EEecccCcccccchHHHHHHHHHhhhccCCEEEEECCCcchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEe
Confidence            99999889999999999999888888889999999998567899999999999999999999999999999999999999


Q ss_pred             ec
Q 006868          626 AW  627 (628)
Q Consensus       626 vw  627 (628)
                      ||
T Consensus       152 ~~  153 (153)
T d1ddga2         152 VY  153 (153)
T ss_dssp             EC
T ss_pred             cC
Confidence            99

>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=99.96  E-value=1.8e-30  Score=238.89  Aligned_cols=144  Identities=28%  Similarity=0.355  Sum_probs=129.6

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCC-CCCeEEEEEecCCCC--CCChhHHHHHHHHHhc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLP-EEDTVIFVVSTTGQG--DTPDSMKVFWRFLLQK   83 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~-~~~~vi~~~sT~g~G--~~p~~~~~F~~~L~~~   83 (628)
                      .||+|+|+|+|||||++|+.|++.|.+.|+++++.++++++..++. +++.|||++||||+|  ++|+++..|++.|...
T Consensus         1 pkv~I~Y~S~tG~te~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~vii~~sT~g~g~~~~~~~~~~f~~~l~~~   80 (147)
T d1f4pa_           1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEET   80 (147)
T ss_dssp             CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGS
T ss_pred             CcEEEEEECCChhHHHHHHHHHHHHHHCCCeEEEEeccccchhhhhcccCeEEEEecccCCcCCChhhhHHHhhhccccc
Confidence            4799999999999999999999999999999999999999887764 678999999999877  5588999999988654


Q ss_pred             cCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868           84 SLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus        84 ~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                      .     ++|++|+|||+||++|++||.+++.++++|+++||+++.+.+++|.+. .+.++.+..|.++|+++|
T Consensus        81 ~-----l~~~~~avfGlGds~y~~f~~a~~~l~~~l~~lGa~~v~~~~~~d~~~-~~~~~~~~~W~~~l~~al  147 (147)
T d1f4pa_          81 G-----AQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDP-RAARDDIVGWAHDVRGAI  147 (147)
T ss_dssp             C-----CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCG-GGGHHHHHHHHHHHHTTC
T ss_pred             c-----ccCCcEEEEecCCccHHHHhHHHHHHHHHHHhCCCEEeeCCEEEecCC-ccchHHHHHHHHHHHHhC
Confidence            3     889999999999999999999999999999999999999999998654 347889999999998653

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.95  E-value=4.5e-28  Score=224.20  Aligned_cols=148  Identities=32%  Similarity=0.482  Sum_probs=125.7

Q ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868          470 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  547 (628)
Q Consensus       470 ~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S  547 (628)
                      |+++|+||||+|||||||+|||+++..+....  ..++++||||||+..|++|.+|+.++.+.+....     .+..+++
T Consensus         1 Dp~~plllIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~-----~~~~~~~   75 (154)
T d1jb9a2           1 DPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNF-----RYDKALS   75 (154)
T ss_dssp             CTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTE-----EEEEEET
T ss_pred             CCCCCEEEEEcceeHHHHHHHHHHHHHhccccccCCceEEEEEEecccchhHHHHHHHHHHHhCCCCE-----EEEEEec
Confidence            46799999999999999999999998754321  3468999999999999999999999998833332     4566666


Q ss_pred             cCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEE
Q 006868          548 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH  623 (628)
Q Consensus       548 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~  623 (628)
                      +...    .+.++++.+....+.+..++.+++.+|||||+ .|+++|.++|.+++.+.+.    .+++++.+|+++|||+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~-~mm~~v~~~L~~~~~~~g~----~~~~~~~~l~~~~r~~  150 (154)
T d1jb9a2          76 REQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLK-GMMPGIQDTLKKVAERRGE----SWDQKLAQLKKNKQWH  150 (154)
T ss_dssp             TTCC----CCCCHHHHHHHTHHHHHHHHHTTCEEEEEECG-GGHHHHHHHHHHHHHHHTC----CHHHHHHHHHHTTCEE
T ss_pred             cCCcCcCCcccccchHHHHhHHHhhhcccCCCEEEEECCH-HHHHHHHHHHHHHHHHcCc----hHHHHHHHHHHCCCEE
Confidence            6543    46889999999999999998899999999998 8999999999999988763    3667999999999999


Q ss_pred             Eeec
Q 006868          624 VEAW  627 (628)
Q Consensus       624 ~dvw  627 (628)
                      +|+|
T Consensus       151 ~d~w  154 (154)
T d1jb9a2         151 VEVY  154 (154)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            9999

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.95  E-value=2.4e-28  Score=227.51  Aligned_cols=151  Identities=24%  Similarity=0.452  Sum_probs=128.5

Q ss_pred             CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEE
Q 006868          467 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY  543 (628)
Q Consensus       467 ~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~  543 (628)
                      .|| ++.+|+||||+|||||||+|||+++..+...+  ..++++||||+|+.+|++|.+||.++.+.+....     .+.
T Consensus         2 ~LP~d~~~plilIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~-----~~~   76 (160)
T d1fnda2           2 LMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNF-----RLD   76 (160)
T ss_dssp             CCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSCCBTTBCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTE-----EEE
T ss_pred             CCCCCCCCCEEEEECchhHHHHHHHHHHHHHhhcccccCCceEEEEeecCcHHHHHHHHHHHHHHHhcCCce-----eEE
Confidence            578 88999999999999999999999998654321  3478999999999999999999999998833332     566


Q ss_pred             EEEecCCC----CccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006868          544 VAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQR  618 (628)
Q Consensus       544 ~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~  618 (628)
                      +++|++..    .+.|+++.+......+++++.. ++.||||||+ +|.++|+++|.+++..++.    .|++++++|++
T Consensus        77 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyiCGp~-~m~~~v~~~l~~~~~~~g~----~a~~~~~~l~~  151 (160)
T d1fnda2          77 FAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLK-GMEKGIDDIMVSLAAAEGI----DWIEYKRQLKK  151 (160)
T ss_dssp             EEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEECH-HHHHHHHHHHHHHHHTTTC----CHHHHHHHHHH
T ss_pred             EEEccchhccCCCcceehhhHHHHHHHHHHhhccCCCEEEEeCCH-HHHHHHHHHHHHHHHhcch----hHHHHHHHHHH
Confidence            77777543    5789999999999999888765 8999999998 9999999999999876653    47789999999


Q ss_pred             cCCEEEeec
Q 006868          619 AGRYHVEAW  627 (628)
Q Consensus       619 ~~Ry~~dvw  627 (628)
                      +|||++|+|
T Consensus       152 ~~ry~~e~~  160 (160)
T d1fnda2         152 AEQWNVEVY  160 (160)
T ss_dssp             TTCEEEEEC
T ss_pred             cCCeEEecC
Confidence            999999999

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.93  E-value=2.2e-26  Score=214.11  Aligned_cols=150  Identities=25%  Similarity=0.447  Sum_probs=125.4

Q ss_pred             CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcC------CCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCC
Q 006868          468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS------SGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGG  540 (628)
Q Consensus       468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~------~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~  540 (628)
                      || ++.+|+||||+|||||||+|||+++.....      ....++++||||||+.+|++|.+|+.++...+....     
T Consensus         1 lP~d~~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~d~~~~~e~~~~~~~~~~~~-----   75 (162)
T d2bmwa2           1 LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNF-----   75 (162)
T ss_dssp             CCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTE-----
T ss_pred             CCcCCCCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchhHHHHHHHHHHHHHhcCCce-----
Confidence            67 888999999999999999999999864321      113478999999999999999999999988744443     


Q ss_pred             cEEEEEecCCC----CccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006868          541 GFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA  615 (628)
Q Consensus       541 ~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~  615 (628)
                      .++++.++...    .+.++++...+..+.+...+.. ++.||||||+ .|.++|.++|.++....+..    +++++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~g~~~~~~----~~~~~~~  150 (162)
T d2bmwa2          76 RLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPP-PMEEGIDAALSAAAAKEGVT----WSDYQKD  150 (162)
T ss_dssp             EEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECT-THHHHHHHHHHHHHHTTTCC----HHHHHHH
T ss_pred             EEEEEeecccccccCCcchhhhhHHHHHHHHhhhcccCCCEEEEECCH-HHHHHHHHHHHHhhcccCcc----HHHHHHH
Confidence            56677777543    4689999999988888887765 8899999998 99999999999998766543    5679999


Q ss_pred             HHHcCCEEEeec
Q 006868          616 LQRAGRYHVEAW  627 (628)
Q Consensus       616 l~~~~Ry~~dvw  627 (628)
                      |++.|||++|+|
T Consensus       151 l~~~~r~~~e~~  162 (162)
T d2bmwa2         151 LKKAGRWHVETY  162 (162)
T ss_dssp             HHHTTCEEEEEC
T ss_pred             HHHCCCeEEecC
Confidence            999999999999

>d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Synechococcus elongatus PCC 7942 [TaxId: 1140]

Probab=99.93  E-value=1.1e-26  Score=217.72  Aligned_cols=118  Identities=25%  Similarity=0.291  Sum_probs=109.4

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS   86 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~   86 (628)
                      .||.|+|||+|||||.+|+.|++.+...|. +++.+++++++.++.+++.+||++||||+|++|+++..|+++|....  
T Consensus         1 aKI~I~YgS~tGnTe~vA~~ia~~l~~~~~-v~i~~~~~~~~~~l~~~d~li~g~sT~g~Ge~p~~~~~f~~~l~~~~--   77 (169)
T d1czna_           1 AKIGLFYGTQTGVTQTIAESIQQEFGGESI-VDLNDIANADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDSVN--   77 (169)
T ss_dssp             CCEEEEECCSSSHHHHHHHHHHHHHTSTTT-EEEEEGGGCCGGGGGGCSEEEEECCEETTTEECHHHHHHGGGGGGSC--
T ss_pred             CcEEEEEECCCchHHHHHHHHHHHhhhCCC-eeEEeccccccccccccCeEEEEecCCCCCCCcHHHHHHHhhhhccc--
Confidence            379999999999999999999999988775 89999999999999999999999999999999999999999886543  


Q ss_pred             ccccCCcEEEEEecCCcC--hhHHHHHHHHHHHHHHhcCCeEeecc
Q 006868           87 KQWLEGVRYAVFGLGDSG--YQKFNFVAKKLDNRLLDLGATAVVER  130 (628)
Q Consensus        87 ~~~l~~~~~aVfGlGds~--y~~f~~a~~~l~~~L~~lGa~~v~~~  130 (628)
                         ++++++++||+||+.  |.+||.+++.++++|+++||++|...
T Consensus        78 ---l~~k~~a~fglGd~~~~y~~F~~a~~~l~~~l~~~Ga~~ig~~  120 (169)
T d1czna_          78 ---FQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYW  120 (169)
T ss_dssp             ---CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCE
T ss_pred             ---CCCceEEEEEecCCcccchhhhhHHHHHHHHHHhCCCceecCc
Confidence               899999999999984  78999999999999999999999663

>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Chondrus crispus [TaxId: 2769]

Probab=99.93  E-value=3.7e-26  Score=214.85  Aligned_cols=147  Identities=21%  Similarity=0.295  Sum_probs=118.9

Q ss_pred             cEEEEEECCcchHHHHHHHHHHHHHhCCCC-cEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868            8 KLLILYASQTGNALDAAERIGRESERRGCP-VVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS   86 (628)
Q Consensus         8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~-v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~   86 (628)
                      ||.|+|||+|||||.+|+.|++.+.+.+.. +.+.  +..++.++.+++.+||++||||.|++|+++..||.++.....+
T Consensus         1 KI~I~YgS~TGnTe~vA~~Ia~~l~~~~~~~v~~~--~~~~~~~l~~~d~li~g~sT~g~Ge~p~~~~~~~~~l~~~~~~   78 (173)
T d2fcra_           1 KIGIFFSTSTGNTTEVADFIGKTLGAKADAPIDVD--DVTDPQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLP   78 (173)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHGGGBCCCEEGG--GCSCGGGGGGCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGG
T ss_pred             CEEEEEECCchHHHHHHHHHHHHHhhcCCCeEEEe--ccchhhccccCCeEEEEEeccCCCCCchhHHHHHHHHhhcccc
Confidence            689999999999999999999999876643 3332  3335668889999999999999999999999999998655555


Q ss_pred             ccccCCcEEEEEecCCcC--hhHHHHHHHHHHHHHHhcCCeEeecc--------------------eeeeCCCC-CCchh
Q 006868           87 KQWLEGVRYAVFGLGDSG--YQKFNFVAKKLDNRLLDLGATAVVER--------------------GLGDDQHP-SGYEG  143 (628)
Q Consensus        87 ~~~l~~~~~aVfGlGds~--y~~f~~a~~~l~~~L~~lGa~~v~~~--------------------~~~d~~~~-~g~~~  143 (628)
                      ...|+|++||||||||+.  |.+||.+++.++++|+++||++|...                    .-+|+... +..++
T Consensus        79 ~~~l~gk~~avFGlGD~~~y~~~F~~a~~~l~~~l~~~GA~~IG~~~~~gy~f~~s~a~~~~~f~gL~lD~dn~~~~t~~  158 (173)
T d2fcra_          79 EVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDMVNDQIPMEK  158 (173)
T ss_dssp             GCCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSEEEETTTCSSCHHH
T ss_pred             CCCCCCCeEEEEEecCCCcchhhHHHHHHHHHHHHHhCCCEEecccCCCCcccccChhhcCCccccccccccccchhhHH
Confidence            556999999999999998  56999999999999999999998431                    11344321 22467


Q ss_pred             hHHHHHHHHHHHH
Q 006868          144 ALDPWMRSLWRRL  156 (628)
Q Consensus       144 ~~~~W~~~l~~~l  156 (628)
                      .+++|+++|.+.+
T Consensus       159 ri~~W~~~l~~e~  171 (173)
T d2fcra_         159 RVAGWVEAVVSET  171 (173)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            7889999887765

>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.92  E-value=2.6e-26  Score=216.64  Aligned_cols=120  Identities=22%  Similarity=0.213  Sum_probs=103.5

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHH----H-HH
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWR----F-LL   81 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~----~-L~   81 (628)
                      .||.|+|||+|||||.+|+.|++.+...|. +++++++++++.++..++.+||++||||+|++|+++..|++    . +.
T Consensus         1 aKI~I~YgS~tGnte~vA~~ia~~l~~~~~-~~v~~~~~~~~~~l~~~d~~i~~~sT~G~Ge~Pd~~~~f~~~~w~~~~~   79 (179)
T d1yoba1           1 AKIGLFFGSNTGKTRKVAKSIKKRFDDETM-SDALNVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFLP   79 (179)
T ss_dssp             CCEEEEECCSSSHHHHHHHHHHTTSCTTTB-CCCEEGGGCCHHHHHTCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHH
T ss_pred             CeEEEEEECCchhHHHHHHHHHHHHhhCCC-ceEEeccccChhhccCcCEEEEEecccCCCCCCchhHHHHHHHHHHHHh
Confidence            379999999999999999999999987775 67889999998899999999999999999999999877642    1 21


Q ss_pred             hccCcccccCCcEEEEEecCCcCh--hHHHHHHHHHHHHHHhcCCeEeec
Q 006868           82 QKSLSKQWLEGVRYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVE  129 (628)
Q Consensus        82 ~~~~~~~~l~~~~~aVfGlGds~y--~~f~~a~~~l~~~L~~lGa~~v~~  129 (628)
                      ..  +...|+|++||||||||++|  .+||.+++.++++|+++||++|..
T Consensus        80 ~~--~~~~l~g~~~avfGlGDs~~~~~~Fc~a~~~l~~~l~~~GA~~iG~  127 (179)
T d1yoba1          80 KI--EGLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGS  127 (179)
T ss_dssp             HH--TTCCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECC
T ss_pred             hc--cccccCCcEEEEEEecCCcccchhHHHHHHHHHHHHHhCCCeEeec
Confidence            21  22348999999999999985  689999999999999999999943

>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.2e-25  Score=211.85  Aligned_cols=142  Identities=20%  Similarity=0.231  Sum_probs=119.2

Q ss_pred             cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcc
Q 006868            8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSK   87 (628)
Q Consensus         8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~   87 (628)
                      +|.|+|||+|||||.+|+.|++.+...+  +++.+++++++.++.+++.+||++||||+|++|++++.|+..+....   
T Consensus         2 ~vgIlYgS~TGnte~vA~~ia~~l~~~~--~~v~~~~~~~~~~l~~~~~~i~~~sT~g~Ge~p~~~~~~~~~l~~~~---   76 (175)
T d1ag9a_           2 ITGIFFGSDTGNTENIAKMIQKQLGKDV--ADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEID---   76 (175)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHCTTT--EEEEEGGGCCHHHHHTCSEEEEECCEETTTEECHHHHHHHHHHTTCC---
T ss_pred             cEEEEEECCChHHHHHHHHHHHHhccCC--cEEEEccchhhhccccccEEEEEecccCCCCCchHHHHHHhhccccc---
Confidence            5899999999999999999999998665  67889999998899999999999999999999999999999886543   


Q ss_pred             cccCCcEEEEEecCCcCh--hHHHHHHHHHHHHHHhcCCeEeecce---------------------eeeCCCC-CCchh
Q 006868           88 QWLEGVRYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVERG---------------------LGDDQHP-SGYEG  143 (628)
Q Consensus        88 ~~l~~~~~aVfGlGds~y--~~f~~a~~~l~~~L~~lGa~~v~~~~---------------------~~d~~~~-~g~~~  143 (628)
                        |++++|+|||+||++|  .+||.+++.++++|+++||+++....                     ..|+... +..++
T Consensus        77 --l~~~~~avfglGd~~~~~~~F~~a~~~l~~~l~~~Ga~~iG~~~~~gy~f~~s~a~~~~~~~~gL~~D~dn~~~~t~~  154 (175)
T d1ag9a_          77 --FNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAE  154 (175)
T ss_dssp             --CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECTTTCHHHHHH
T ss_pred             --cCCCcEEEEEccCCchhhhHHHHHHHHHHHHHHhcCCEEecccCCCCcccccchhhccCCeeeeeeeccccchhHHHH
Confidence              8999999999999986  58999999999999999999985421                     1122211 01245


Q ss_pred             hHHHHHHHHHHHH
Q 006868          144 ALDPWMRSLWRRL  156 (628)
Q Consensus       144 ~~~~W~~~l~~~l  156 (628)
                      .++.|+++|++.|
T Consensus       155 ri~~W~~~l~~e~  167 (175)
T d1ag9a_         155 RVEKWVKQISEEL  167 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            6778998888776

>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Anabaena, pcc 7119 and 7120 [TaxId: 1163]

Probab=99.89  E-value=1.2e-23  Score=197.25  Aligned_cols=143  Identities=22%  Similarity=0.286  Sum_probs=120.3

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS   86 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~   86 (628)
                      |+|.|+|||+|||||.+|+.|++.+...+  +++.+++++++.+|.+++.+||++||||.|++|+++..|+..+....  
T Consensus         2 KKI~I~YgS~tGnTe~vA~~I~~~l~~~~--~~v~~i~~~~~~~l~~~d~~i~g~sT~g~G~~p~~~~~~~~~l~~~~--   77 (169)
T d1oboa_           2 KKIGLFYGTQTGKTESVAEIIRDEFGNDV--VTLHDVSQAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDVD--   77 (169)
T ss_dssp             CSEEEEECCSSSHHHHHHHHHHHHHCTTT--EEEEETTTCCGGGGGGCSEEEEEEEEETTTEECHHHHHHHTTGGGCC--
T ss_pred             CEEEEEEECCCchHHHHHHHHHHHhccCC--ceEEEcccCChhhhccCCEEEEEEecCCCCCCChhHHHhhhhhcccC--
Confidence            68999999999999999999999997665  67899999999999999999999999999999999999999876543  


Q ss_pred             ccccCCcEEEEEecCCcC--hhHHHHHHHHHHHHHHhcCCeEeecc-------------------ee-eeCCCC-CCchh
Q 006868           87 KQWLEGVRYAVFGLGDSG--YQKFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQHP-SGYEG  143 (628)
Q Consensus        87 ~~~l~~~~~aVfGlGds~--y~~f~~a~~~l~~~L~~lGa~~v~~~-------------------~~-~d~~~~-~g~~~  143 (628)
                         ++++++++||+||+.  |.+||.|++.+.++|.++||+.+...                   +. .|+... +-.++
T Consensus        78 ---l~~k~~a~fg~Gd~~~~~e~f~~a~~~l~~~l~~~g~~~ig~~~~~g~~f~~s~~~~~~~fiGl~lD~d~~~e~t~e  154 (169)
T d1oboa_          78 ---FNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDD  154 (169)
T ss_dssp             ---CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTTCGGGHHH
T ss_pred             ---CCCCceeEEeccCCcchhhhHhhhHHHHHHHHHhcCCcccccccCCCccccccccccCCeEEecCcCccCcccccHH
Confidence               899999999999984  67999999999999999999988542                   11 232221 11246


Q ss_pred             hHHHHHHHHHHHH
Q 006868          144 ALDPWMRSLWRRL  156 (628)
Q Consensus       144 ~~~~W~~~l~~~l  156 (628)
                      .+++|+++|.+.+
T Consensus       155 ri~~Wv~~i~~e~  167 (169)
T d1oboa_         155 RIKSWVAQLKSEF  167 (169)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            6778888887655

>d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavoprotein NrdI
domain: Flavoprotein NrdI
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=1.2e-22  Score=182.19  Aligned_cols=125  Identities=14%  Similarity=0.138  Sum_probs=93.2

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL   85 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~   85 (628)
                      ...|.|+|||+||||+++|++|+.       +.....     ...+...+.+||++||||+|++|+++++|+++|     
T Consensus         8 ~~~i~I~Y~S~TGnae~~A~~l~~-------~~~~~~-----~~~~~~~~~~ilitsT~G~Ge~P~~~~~F~~~l-----   70 (135)
T d1rlja_           8 NAMVQIIFDSKTGNVQRFVNKTGF-------QQIRKV-----DEMDHVDTPFVLVTYTTNFGQVPASTQSFLEKY-----   70 (135)
T ss_dssp             HSCCEEEECCSSSHHHHHHTTSCC-------SEEEET-----TSCSCCCSCEEEEECCBGGGBCCHHHHHHHHHH-----
T ss_pred             CCeEEEEEECCchhHHHHHHHHhh-------hhhccc-----ccccccccceEEEecCCCCCCCCHHHHHHHHhc-----
Confidence            356899999999999999987742       222211     123344567899999999999999999999875     


Q ss_pred             cccccCCcEEEEEecCCcChh-HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHh
Q 006868           86 SKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ  158 (628)
Q Consensus        86 ~~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~  158 (628)
                           ++++|||||+||++|+ +||.+++.++++|.   +..+.. .+.  ..++.+.+.+.+|+++++..+..
T Consensus        71 -----~~~~~aV~G~Gd~~y~~~Fc~a~~~i~~~~~---~~~~~~-~E~--~g~~~D~e~~~~~v~~~~~~~~~  133 (135)
T d1rlja_          71 -----AHLLLGVAASGNKVWGDNFAKSADTISRQYQ---VPILHK-FEL--SGTSKDVELFTQEVERVVTKSSA  133 (135)
T ss_dssp             -----GGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---CCEEEE-EET--TCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             -----cccceEEEEeCCchHHHHHHHHHHHHHHHhC---CCceEe-eec--CCCHHHHHHHHHHHHHHHHHHHc
Confidence                 3578999999999995 89999999999884   333322 122  22222467888999999988754

>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Megasphaera elsdenii [TaxId: 907]

Probab=99.85  E-value=2.7e-21  Score=174.79  Aligned_cols=134  Identities=20%  Similarity=0.217  Sum_probs=115.0

Q ss_pred             EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhH-HHHHHHHHhccCcc
Q 006868            9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSM-KVFWRFLLQKSLSK   87 (628)
Q Consensus         9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~-~~F~~~L~~~~~~~   87 (628)
                      |.|+|+|+||||+++|+.|++.|.+.|++++++++++.++.++.+++.+||++||||.|.+|+++ ..|++.+..     
T Consensus         2 V~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~ii~g~pT~~~g~~p~~~~~~~~~~~~~-----   76 (137)
T d2fz5a1           2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-----   76 (137)
T ss_dssp             EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-----
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHhcCCceEEeehhhHHHhhhhccceEEEEEecccCCcCChhHHHHHHHHhcc-----
Confidence            78999999999999999999999999999999999999999999999999999999999998875 567777643     


Q ss_pred             cccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHH
Q 006868           88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR  154 (628)
Q Consensus        88 ~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~  154 (628)
                       .++|+++++||+|+..|   +.+.+.++++|+++|++.+.+....+..+   ..+.+.+|.+.|.+
T Consensus        77 -~~~gk~~~~fgs~g~~~---~~a~~~l~~~l~~~G~~~v~~~~~~~~~~---d~~~~~e~g~~lA~  136 (137)
T d2fz5a1          77 -KLKGKKVGLFGSYGWGS---GEWMDAWKQRTEDTGATVIGTAIVNEMPD---NAPECKELGEAAAK  136 (137)
T ss_dssp             -GCSSCEEEEEEEESSCC---SHHHHHHHHHHHHTTCEEEEEEEEESSSS---SCTHHHHHHHHHHT
T ss_pred             -ccCCCeEEEEEecCCCc---CHHHHHHHHHHHHCCCEEeeceeecCCCC---hHHHHHHHHHHHhc
Confidence             27899999999887766   45668999999999999999877776643   35567778777654

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=99.84  E-value=2.3e-21  Score=178.39  Aligned_cols=146  Identities=14%  Similarity=0.100  Sum_probs=129.9

Q ss_pred             CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc----CCCCCCeEEEEEecCCCCCCChhHHHHHHHH
Q 006868            5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR----CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFL   80 (628)
Q Consensus         5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~----~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L   80 (628)
                      ++++|+|+|+|+||||+++|+.|++.|.+.|+++.++++.+.+.+    ++.++|.+||++||| .|.+++.++.|++.+
T Consensus         1 p~~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~~~~~l~~~d~vi~Gspt~-~~~~~~~~~~~l~~~   79 (152)
T d1e5da1           1 PTNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTH-NNGILPYVAGTLQYI   79 (152)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCB-TTBCCHHHHHHHHHH
T ss_pred             CCCeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhhhccchhhCCEEEEecccc-CCccCchhHHHHHHh
Confidence            468899999999999999999999999999999999999987754    456899999999999 688999999999988


Q ss_pred             HhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhC
Q 006868           81 LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQID  160 (628)
Q Consensus        81 ~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~  160 (628)
                      ...+     ++++.+++||    +|+|+|.+.+.+++.|+++|++.+.+...++..+++...+.+.+|.++|.+.|++..
T Consensus        80 ~~~~-----~~~k~~~~fg----s~g~~~~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~e~g~~i~~~lk~k~  150 (152)
T d1e5da1          80 KGLR-----PQNKIGGAFG----SFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALKAKL  150 (152)
T ss_dssp             HHTC-----CCSCEEEEEE----EESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccC-----CCCCEEEEEE----eeCCCCccHHHHHHHHHHCCCEEecCcEEEecCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            7654     7899999999    578999999999999999999999998888877665577788899999999997653

>d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Helicobacter pylori [TaxId: 210]

Probab=99.84  E-value=1.9e-21  Score=180.57  Aligned_cols=111  Identities=23%  Similarity=0.263  Sum_probs=97.2

Q ss_pred             cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcc
Q 006868            8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSK   87 (628)
Q Consensus         8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~   87 (628)
                      ||.|+|||+|||||.+|+.|++.+.    .+++++++++++.++.+++.+||++||||+|++|+++..|++.+...    
T Consensus         2 KI~I~YgS~tGnte~vA~~ia~~~~----~~~v~~i~~~~~~~l~~~d~li~~~sT~g~G~~p~~~~~~~~~l~~~----   73 (163)
T d1fuea_           2 KIGIFFGTDSGNAEAIAEKISKAIG----NAEVVDVAKASKEQFNGFTKVILVAPTAGAGDLQTDWEDFLGTLEAS----   73 (163)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHC----SEEEEEGGGCCHHHHTTCSEEEEEEEBCGGGCBCHHHHHHHTTCCTH----
T ss_pred             eEEEEEECCCcHHHHHHHHHHHhcC----CCeEEehhhccchhhccCceEEEecccCCCCCCCHhHHHHHhhcccc----
Confidence            6999999999999999999999874    47899999999999999999999999999999999999999876443    


Q ss_pred             cccCCcEEEEEecCCcCh--hHHHHHHHHHHHHHHhcCCeEeec
Q 006868           88 QWLEGVRYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVE  129 (628)
Q Consensus        88 ~~l~~~~~aVfGlGds~y--~~f~~a~~~l~~~L~~lGa~~v~~  129 (628)
                       .|+|++|||||+||+.|  .+||.+...+...  ..||+.+..
T Consensus        74 -~l~g~~~avfglGd~~~~~~~f~~a~~~~~~~--~~ga~~vg~  114 (163)
T d1fuea_          74 -DFANKTIGLVGLGDQDTYSETFAEGIFHIYEK--AKAGKVVGQ  114 (163)
T ss_dssp             -HHHTSEEEEEEECCTTTTTBSTTCHHHHHHHH--HTTSEECCC
T ss_pred             -cCCCCeEEEEEecCcccccccchhhhHHHHHH--hcCCccccc
Confidence             38999999999999875  3899999888654  468887743

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.84  E-value=5.5e-21  Score=173.63  Aligned_cols=118  Identities=14%  Similarity=0.167  Sum_probs=98.8

Q ss_pred             CCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006868          466 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  544 (628)
Q Consensus       466 F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~  544 (628)
                      |.|+ +..+|+||||+|||||||+||+++....+..   .+++||||+|+.+|++|++||++|.+.++++      +++.
T Consensus         1 F~l~~~~~~p~vliagGtGItP~~s~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~------~~~~   71 (141)
T d1tvca2           1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAP---NETRIYFGVNTEPELFYIDELKSLERSMRNL------TVKA   71 (141)
T ss_dssp             CSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHTCC---SCEEEEEECSSSTTCCCHHHHHHHHHHSSSC------EEEE
T ss_pred             CCCCCCCCCcEEEEECchhHHHHHHHHHHHHHcCCC---CceEEEeecccchhhhhHHHHHHHHhhcccc------ccce
Confidence            7788 8899999999999999999999999887654   7999999999999999999999998877888      8999


Q ss_pred             EEecCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          545 AFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       545 a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                      +++|...    .++++++.+.+....    ...+..||||||+ .|.++|.+.|.+.
T Consensus        72 ~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~vyiCGp~-~m~~~v~~~l~~~  123 (141)
T d1tvca2          72 CVWHPSGDWEGEQGSPIDALREDLES----SDANPDIYLCGPP-GMIDAACELVRSR  123 (141)
T ss_dssp             CCSSCSSCCSSSSSSSSHHHHHHHHH----SSSSSEEEEESSH-HHHHHHHHHHHHH
T ss_pred             eecccccCcCCccchhHHHHHHhccc----ccccceeeccCCH-HHHHHHHHHHHHc
Confidence            9988654    467788877655221    1337899999998 9999888877553

>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.83  E-value=8.7e-21  Score=171.54  Aligned_cols=135  Identities=21%  Similarity=0.212  Sum_probs=116.8

Q ss_pred             EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChh-HHHHHHHHHhccCcc
Q 006868            9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDS-MKVFWRFLLQKSLSK   87 (628)
Q Consensus         9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~-~~~F~~~L~~~~~~~   87 (628)
                      |.|+|+|+||||+++|+.|++.|.+.|+.+++.++++++..++.+++.+||++||||.|.+|++ +..|++.+..     
T Consensus         1 i~IvY~S~tGnT~~vA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~~~i~g~pt~~~g~~p~~~~~~~~~~~~~-----   75 (138)
T d5nula_           1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEIST-----   75 (138)
T ss_dssp             CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGG-----
T ss_pred             CEEEEECcChHHHHHHHHHHHHHHhcCCcceecccccccccccccCCeEEEEEeccCCCCCChHHHHHHHHHhCc-----
Confidence            5799999999999999999999999999999999999999999999999999999999998876 5566665532     


Q ss_pred             cccCCcEEEEEecCCcChhH-HHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHH
Q 006868           88 QWLEGVRYAVFGLGDSGYQK-FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR  154 (628)
Q Consensus        88 ~~l~~~~~aVfGlGds~y~~-f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~  154 (628)
                       .++|+++++||+    |++ +|.+.+.++++|+++|++++.+...++..+++ ..+.+.+|.++|++
T Consensus        76 -~~~gk~~~~f~s----~g~~~~~~~~~~~~~l~~~G~~~v~~~~~~~~~p~e-~~~~~~~~g~~lA~  137 (138)
T d5nula_          76 -KISGKKVALFGS----YGWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPDE-AEQDCIEFGKKIAN  137 (138)
T ss_dssp             -GCTTCEEEEEEE----ESSSCSHHHHHHHHHHHHTTCEECSCCEEEESSCGG-GHHHHHHHHHHHHT
T ss_pred             -cCCCCcEEEEEE----ecCCCCHHHHHHHHHHHHCCCEEecCcEEECCCCcH-HHHHHHHHHHHHhc
Confidence             278999999995    443 57889999999999999999999999987653 66788889888753

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=9.1e-21  Score=173.59  Aligned_cols=140  Identities=17%  Similarity=0.149  Sum_probs=118.5

Q ss_pred             cCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc-------CCCCCCeEEEEEecCCCCCCChhHHHH
Q 006868            4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR-------CLPEEDTVIFVVSTTGQGDTPDSMKVF   76 (628)
Q Consensus         4 ~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~-------~l~~~~~vi~~~sT~g~G~~p~~~~~F   76 (628)
                      +++.+|+|+|+|+||||+++|+.|++.|.+.|+.+.++++.+++..       ++.+++.+||++||| .|.+|+.+..|
T Consensus         1 p~~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~iiigspt~-~~~~~~~~~~~   79 (148)
T d1vmea1           1 PKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTY-EAEIHPLMRFT   79 (148)
T ss_dssp             CCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECEE-TTEECHHHHHH
T ss_pred             CCCCEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEecccccccchhHhhhhHHHCCEeEEEeccc-CCccCchHHHH
Confidence            3578999999999999999999999999999999999999887744       477999999999999 58888899999


Q ss_pred             HHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868           77 WRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus        77 ~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                      +..+....     ++|+++++||    +|++||.+++.+++.|+++|++++.+ ..++...+  .++.+++|.+.+.+.|
T Consensus        80 l~~~~~~~-----~~~k~~~~fg----s~g~~~~a~~~~~~~l~~~G~~~v~~-~~~~~~~~--de~~~~e~~~~~~k~l  147 (148)
T d1vmea1          80 LLEIIDKA-----NYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSF-TEIKGSNM--DERKIEEAISLLKKEL  147 (148)
T ss_dssp             HHHHHHHC-----CCCCEEEEEE----ECCCCCCC-CCHHHHHHTSSCEEEEE-EEECSTTC--CTHHHHHHHHHHHHHH
T ss_pred             HHHHhhcc-----cCCCEEEEEE----cCCCccchHHHHHHHHHHcCCcEEee-EEEeCCCC--CHHHHHHHHHHHHHhc
Confidence            99886644     7899999999    57899999999999999999998865 45555433  4677888888777665

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.81  E-value=1e-20  Score=170.06  Aligned_cols=114  Identities=19%  Similarity=0.297  Sum_probs=95.7

Q ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006868          469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR  548 (628)
Q Consensus       469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr  548 (628)
                      .+..+|+||||+|||||||+|++++....+..   .+++|+||+|+++|++|.+||++|.++++++      ++..++|+
T Consensus         2 rd~~rplv~IAgG~GItP~~s~l~~~~~~~~~---~~i~l~~~~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~   72 (133)
T d1krha2           2 RDVKRPVLMLAGGTGIAPFLSMLQVLEQKGSE---HPVRLVFGVTQDCDLVALEQLDALQQKLPWF------EYRTVVAH   72 (133)
T ss_dssp             CCCSSCEEEEEEGGGHHHHHHHHHHHHHHCCS---SCEEEEEEESSGGGCCCHHHHHHHHHHCTTE------EEEEEETT
T ss_pred             CCCCCCEEEEEccHhHHHHHHHHHHHHHcCCC---CceEEEEeecchhHHHHHHHHHHHHHhCCce------eeeeeeec
Confidence            35678999999999999999999998887654   7899999999999999999999998887888      88899998


Q ss_pred             CCC---CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868          549 KQP---QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  597 (628)
Q Consensus       549 ~~~---~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  597 (628)
                      ++.   .++||++.+.+....     ..+..+|||||+ .|.++|++.|.+.
T Consensus        73 ~~~~~~~~g~v~~~i~~~~~~-----~~~~~vyiCGp~-~m~~~v~~~L~~~  118 (133)
T d1krha2          73 AESQHERKGYVTGHIEYDWLN-----GGEVDVYLCGPV-PMVEAVRSWLDTQ  118 (133)
T ss_dssp             CCSSSSEESCSGGGCCGGGGG-----GGCSEEEEEEEH-HHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHhhcc-----cccceEEEECCH-HHHHHHHHHHHHc
Confidence            654   367888877654211     238899999998 9999998887664

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=99.80  E-value=2.7e-20  Score=170.58  Aligned_cols=142  Identities=15%  Similarity=0.047  Sum_probs=122.9

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC----CCCCeEEEEEecCCCCCCChhHHHHHHHHH
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLL   81 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~   81 (628)
                      +.+++|+|+|+||||+++|+.|++.+.+.|+.++++++.+.+.+++    .++|.+||++||| .|.+|+.++.|++.+.
T Consensus         2 k~K~lIvY~S~~GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspt~-~g~~~~~~~~~l~~l~   80 (149)
T d1ycga1           2 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTI-NNDILPVVSPLLDDLV   80 (149)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCCB-TTBCCGGGHHHHHHHH
T ss_pred             CcEEEEEEECCCcHHHHHHHHHHHHHHhcCCeeEEEEccccchHHHhhhhhhCCeEEEEeecc-cCCCCHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999998886654    4799999999999 7999999999999987


Q ss_pred             hccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc-eeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868           82 QKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER-GLGDDQHPSGYEGALDPWMRSLWRRLH  157 (628)
Q Consensus        82 ~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~-~~~d~~~~~g~~~~~~~W~~~l~~~l~  157 (628)
                      ...     ++++.+++||    +|++++.+.+.+.+.|+.+|++.+.+. ..+...+++...+.+.+|.++|.+.|+
T Consensus        81 ~~~-----~~~k~~~~fg----s~g~~g~a~~~l~~~l~~~g~~~v~~~~~~~~~~P~~~dl~~~~e~g~~ia~kl~  148 (149)
T d1ycga1          81 GLR-----PKNKVGLAFG----AYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARIA  148 (149)
T ss_dssp             HHC-----CSSCEEEEEE----EESSSCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             ccc-----cCCCEEEEEe----cccCCchhHHHHHHHHHHCCCEEeccceEEEcccCCHHHHHHHHHHHHHHHHHhh
Confidence            654     7899999999    578889999999999999999998754 556555544456788889998888774

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=8e-20  Score=166.96  Aligned_cols=136  Identities=13%  Similarity=0.163  Sum_probs=97.2

Q ss_pred             CCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC
Q 006868          472 SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP  551 (628)
Q Consensus       472 ~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~  551 (628)
                      .+++||||+|||||||+||++++...+..   ++++||||+|+.+|++|.++++++.+.++++.     .+.++.++++.
T Consensus         6 ~k~lvlIa~GtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~-----~~~~~~~~~~~   77 (148)
T d1fdra2           6 CETLWMLATGTAIGPYLSILRLGKDLDRF---KNLVLVHAARYAADLSYLPLMQELEKRYEGKL-----RIQTVVSRETA   77 (148)
T ss_dssp             CSEEEEEEEGGGGHHHHHHHHHCCSCTTC---SEEEEEEEESSGGGCTTHHHHHHHHHHTTTSE-----EEEEEESSSCC
T ss_pred             CCEEEEEEcCeEHHHHHHHHHHHHHhCCC---CcEEEEEecCcHHHHHHHHHhhhHHHhccccc-----cccccccCccc
Confidence            46899999999999999999997665544   89999999999999999999999998867763     45566666654


Q ss_pred             C---ccchhhhHHHc--HHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEe
Q 006868          552 Q---KVYVQHKMLEQ--SQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVE  625 (628)
Q Consensus       552 ~---k~yVqd~l~~~--~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~d  625 (628)
                      .   .+++++.+...  .+.+...+ .+++.||||||+ .|.++|.+.|.+..    ++++       ....+.|+|+.|
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vyiCGp~-~m~~~v~~~L~e~~----g~~e-------~~~~~~g~i~~E  145 (148)
T d1fdra2          78 AGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNP-QMVRDTQQLLKETR----QMTK-------HLRRRPGHMTAE  145 (148)
T ss_dssp             TTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECH-HHHHHHHHHHHHHH----CCCB-------CBTTBCCSEEEE
T ss_pred             cccccccccchHHHHHHHHhhccccccccceEEEECCH-HHHHHHHHHHHHhc----CCCc-------cCCCCCCeEEEE
Confidence            3   34555544432  11221112 236779999998 99999988887643    2322       011335789988


Q ss_pred             ec
Q 006868          626 AW  627 (628)
Q Consensus       626 vw  627 (628)
                      -|
T Consensus       146 ~~  147 (148)
T d1fdra2         146 HY  147 (148)
T ss_dssp             EC
T ss_pred             eC
Confidence            74

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=3.1e-19  Score=160.48  Aligned_cols=111  Identities=21%  Similarity=0.267  Sum_probs=90.0

Q ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecC
Q 006868          470 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK  549 (628)
Q Consensus       470 ~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~  549 (628)
                      +..+|+||||+|||||||+|+++++......   .+++||||+|+.+|++|.+++.++...++.+      ......++.
T Consensus         3 d~~rplv~IagGtGiaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~~~~   73 (135)
T d1qfja2           3 DEERPMILIAGGTGFSYARSILLTALARNPN---RDITIYWGGREEQHLYDLCELEALSLKHPGL------QVVPVVEQP   73 (135)
T ss_dssp             CSSSCEEEEEETTCHHHHHHHHHHHHHHCTT---CCEEEEEEESSGGGCTTHHHHHHHHHHCTTE------EEEEEESSC
T ss_pred             CCCCCEEEEECceeHHHHHHHHHHHHHcccc---cceeEEEecccHhHHHHHHHHHHHHHhcCcc------ceeeeeccc
Confidence            5678999999999999999999999887654   8899999999999999999999999886666      666666665


Q ss_pred             CC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHH
Q 006868          550 QP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFE  595 (628)
Q Consensus       550 ~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~  595 (628)
                      ..    .++|+++.+.+....     ..+..+|||||+ .|.+++.+.|.
T Consensus        74 ~~~~~~~~g~~~~~~~~~~~~-----~~~~~~yvCGp~-~m~~~~~~~L~  117 (135)
T d1qfja2          74 EAGWRGRTGTVLTAVLQDHGT-----LAEHDIYIAGRF-EMAKIARDLFC  117 (135)
T ss_dssp             CTTCCSEESCHHHHHHHHCSC-----CTTCEEEEESCH-HHHHHHHHHHH
T ss_pred             CcccccccCchHHHHHHhccC-----cccCceEeeCCH-HHHHHHHHHHH
Confidence            43    357888776553111     238899999998 99988887764

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.75  E-value=1.6e-18  Score=158.65  Aligned_cols=124  Identities=19%  Similarity=0.290  Sum_probs=101.8

Q ss_pred             CCCcccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCcc
Q 006868          225 NNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK  303 (628)
Q Consensus       225 ~~~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~  303 (628)
                      +...++|. +|++|++||.+++.+.++||+|+++ .++.|+|||.|+|+|++.+                          
T Consensus        23 y~~~nP~~a~v~~n~~Lt~~~s~k~t~hie~dl~-~~~~y~~Gq~lgI~p~~~~--------------------------   75 (157)
T d1jb9a1          23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPGEN--------------------------   75 (157)
T ss_dssp             BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECT-TSSCCCTTCEEEEECSSBC--------------------------
T ss_pred             CCCCCCeEEEEEeEEEcccCCCCceEEEEEecCC-CCccEecCceEEEEcCCcc--------------------------
Confidence            34556788 9999999999999999999999997 5899999999999997532                          


Q ss_pred             CCCCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHh
Q 006868          304 NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVL  383 (628)
Q Consensus       304 ~~~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l  383 (628)
                        .                        ..                                                   
T Consensus        76 --~------------------------~~---------------------------------------------------   78 (157)
T d1jb9a1          76 --P------------------------KK---------------------------------------------------   78 (157)
T ss_dssp             --T------------------------TS---------------------------------------------------
T ss_pred             --c------------------------cc---------------------------------------------------
Confidence              0                        00                                                   


Q ss_pred             hhCCCCCCCHHHHHHhcCCCcccceeeccCCCCCC---CeEEEEEEEEEeecC----CCCcccccccHHhhCcCCCCCce
Q 006868          384 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHP---NQVHLTVSVVSWTTP----YKRKRTGLCSVWLAGLDPQQGIY  456 (628)
Q Consensus       384 ~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~---~~i~l~V~~v~~~~~----~~~~~~G~~S~~L~~l~~~~G~~  456 (628)
                                     .+.++++|.|||||+|..++   +.++++|+.+.|.++    .++.+.|+||+||++|++  ||.
T Consensus        79 ---------------~~~p~~~R~YSIaSSp~~~~~~~~~~~~~V~~v~~~~~~~~~~~r~~~GvcS~yL~~lk~--Gd~  141 (157)
T d1jb9a1          79 ---------------PGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKP--GDK  141 (157)
T ss_dssp             ---------------TTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCBCTTTCCBCGGGSCHHHHHHHTCCT--TCE
T ss_pred             ---------------cCccCCcCEEEecCCCcCCCCCCCEEEEEEEEeeccccccccCCcccCceeehhhccCCC--cCE
Confidence                           01356899999999996544   468888888877654    356789999999999999  999


Q ss_pred             EEEEeecCC-CCCC
Q 006868          457 IPAWFQKGS-LPRP  469 (628)
Q Consensus       457 v~i~~~~g~-F~lp  469 (628)
                      |.|+++.|. |.||
T Consensus       142 V~i~gp~g~~F~lP  155 (157)
T d1jb9a1         142 IQLTGPSGKIMLLP  155 (157)
T ss_dssp             EEEEEEECSTTCCC
T ss_pred             EEEEecCCCcccCC
Confidence            999999995 8888

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.72  E-value=2.6e-18  Score=155.58  Aligned_cols=115  Identities=17%  Similarity=0.336  Sum_probs=86.4

Q ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecC
Q 006868          470 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK  549 (628)
Q Consensus       470 ~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~  549 (628)
                      +..+|+||||+|||||||+|++++...+.    ..+++|+||+|+++|++|.+++.++.+.+.++      +++.+++++
T Consensus         3 d~~~plvliagGtGIaP~~sil~~~~~~~----~~~i~li~~~r~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~   72 (142)
T d1cqxa3           3 DAKTPIVLISGGVGLTPMVSMLKVALQAP----PRQVVFVHGARNSAVHAMRDRLREAAKTYENL------DLFVFYDQP   72 (142)
T ss_dssp             TCCSCEEEEESSCCHHHHHHHHHHHTCSS----CCCEEEEEEESCSSSCHHHHHHHHHHHHCTTE------EEEEEESSC
T ss_pred             CCCCCEEEEEcceeHHHHHHHHHHHHHcC----CCcEEEEeeccChhhhhhHHHHHHHHHhCCCe------EEEEEEccc
Confidence            46789999999999999999998865443    27899999999999999999999998887777      899999986


Q ss_pred             CCC----ccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          550 QPQ----KVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       550 ~~~----k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ...    ..+...... ..+.+.+.+ ..++.+|||||+ .|.+++.+.|.+
T Consensus        73 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~  122 (142)
T d1cqxa3          73 LPEDVQGRDYDYPGLV-DVKQIEKSILLPDADYYICGPI-PFMRMQHDALKN  122 (142)
T ss_dssp             CTTCCBTTTBSEESSC-CGGGSHHHHCCTTCEEEEESSH-HHHHHHHHHHHH
T ss_pred             CCcccccccccchhhh-HHHHHHhhcccCCceEEEECCh-hHHHHHHHHHHH
Confidence            542    111111110 011122222 348899999998 999988887765

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=8.9e-19  Score=159.00  Aligned_cols=117  Identities=14%  Similarity=0.180  Sum_probs=88.1

Q ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecC
Q 006868          470 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK  549 (628)
Q Consensus       470 ~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~  549 (628)
                      ..++|+||||+|||||||+|+++++...+..   ++++||||+|+.+|++|.+++.++.++++++      +++.+++++
T Consensus         4 ~~d~plv~IagGtGiaP~~s~l~~l~~~~~~---~~i~l~~~~r~~~d~~~~~el~~~~~~~~~~------~~~~~~~~~   74 (143)
T d1gvha3           4 ADDTPVTLISAGVGQTPMLAMLDTLAKAGHT---AQVNWFHAAENGDVHAFADEVKELGQSLPRF------TAHTWYRQP   74 (143)
T ss_dssp             CTTCCEEEEEEGGGGHHHHHHHHHHHHHTCC---SCEEEEEEESCTTTCCSHHHHHHHHHTSSSE------EEEEEESSC
T ss_pred             CCCCCEEEEEchhhHHHHHHHHHHHHHcCCC---ceEEEEeecCCHHHHHHHHHHHHHHHhCCce------EEEEEEecc
Confidence            3568999999999999999999998887654   8999999999999999999999999887888      788888876


Q ss_pred             CCC---ccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          550 QPQ---KVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       550 ~~~---k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                      ...   +.++++......+.+.+... ++..+|||||+ .|.++|.+.|.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iCGp~-~m~~~v~~~L~~  124 (143)
T d1gvha3          75 SEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPV-GFMQFTAKQLVD  124 (143)
T ss_dssp             CHHHHHHTCCSEESSCCGGGSSSCCCCTTCEEEEESCH-HHHHHHHHHHHH
T ss_pred             CcccccccceeeeccccHHHHHhcccccCcEEEEeCcH-HHHHHHHHHHHH
Confidence            541   11222111111111111122 38899999998 999888877766

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.72  E-value=1.8e-18  Score=152.15  Aligned_cols=110  Identities=10%  Similarity=0.153  Sum_probs=83.3

Q ss_pred             CCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006868          465 SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  544 (628)
Q Consensus       465 ~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~  544 (628)
                      .|.+++..+|+||||+|||||||+|+++++.....    .+++|+||+|+++|++|.++++++... ..+      .+..
T Consensus         1 dF~l~~~~~~~v~IagGtGiaP~~s~~~~l~~~~~----~~~~l~~~~r~~~~~~~~~~l~~~~~~-~~~------~~~~   69 (120)
T d2piaa2           1 EFPLDKRAKSFILVAGGIGITPMLSMARQLRAEGL----RSFRLYYLTRDPEGTAFFDELTSDEWR-SDV------KIHH   69 (120)
T ss_dssp             CSCCCTTCSEEEEEEEGGGHHHHHHHHHHHHHHCS----SEEEEEEEESCGGGCTTHHHHHSTTTT-TTE------EEEE
T ss_pred             CCCCCCCCCCEEEEEecccHHHHHHHHHHHHHhcC----CCeEEEEeeCCHHHhhhhHHHHHHhhC-CCe------EEee
Confidence            48888777899999999999999999999876643    689999999999999999999999876 544      3333


Q ss_pred             EEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHH
Q 006868          545 AFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFE  595 (628)
Q Consensus       545 a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~  595 (628)
                      ..++.+ ....+...+..        ..+++.+|+|||+ .|.++|++++.
T Consensus        70 ~~~~~~-~~~~~~~~~~~--------~~~~~~~y~CGp~-~mi~~v~~~~~  110 (120)
T d2piaa2          70 DHGDPT-KAFDFWSVFEK--------SKPAQHVYCCGPQ-ALMDTVRDMTG  110 (120)
T ss_dssp             CTTCTT-SCCCHHHHHSS--------CCTTEEEEEESCH-HHHHHHHHHTT
T ss_pred             ecCCCc-ccccHHHHhcc--------CCCcCEEEEeCCH-HHHHHHHHHHc
Confidence            333322 23333332222        2348899999998 99999887653

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9.9e-18  Score=152.88  Aligned_cols=119  Identities=14%  Similarity=0.228  Sum_probs=87.9

Q ss_pred             CCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcC-CCcccCCCCc
Q 006868          464 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGG  541 (628)
Q Consensus       464 g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~~~  541 (628)
                      +.+... +..++++|||+|||||||+|++++...+...  ..+++|+||+|+.+|++|++||+++.+.+ .++      +
T Consensus         9 ~~~~~~~~~~k~i~lIagGtGItP~~s~l~~~l~~~~~--~~~i~L~~~~r~~~~~~~~~el~~l~~~~~~~~------~   80 (147)
T d1umka2           9 KKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDD--HTVCHLLFANQTEKDILLRPELEELRNKHSARF------K   80 (147)
T ss_dssp             TTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTTC--CCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTE------E
T ss_pred             CCCCcccccCCeEEEEECCeecchHHHHHHHHHhcCCC--CceEEEEEEeCccccchhHHHHhhhhhhcCcce------E
Confidence            444433 5668899999999999999999998765432  36799999999999999999999998764 344      6


Q ss_pred             EEEEEecCCC----CccchhhhHHHcHHHHHHHH---hCCCEEEEeCCCCCCHHH-HHHHHHHH
Q 006868          542 FYVAFSRKQP----QKVYVQHKMLEQSQRIWNLL---LSKASIYVAGSATKMPSD-VWSTFEEI  597 (628)
Q Consensus       542 ~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l---~~~~~iyvCG~~~~M~~~-v~~~L~~i  597 (628)
                      ++.+.++...    .++++++.+.+      +.+   .++..+|||||+ .|.+. ++++|.+.
T Consensus        81 ~~~~~~~~~~~~~~~~g~~~~~~l~------~~~~~~~~~~~vyiCGP~-~m~~~~~~~~L~~~  137 (147)
T d1umka2          81 LWYTLDRAPEAWDYGQGFVNEEMIR------DHLPPPEEEPLVLMCGPP-PMIQYACLPNLDHV  137 (147)
T ss_dssp             EEEEESSCCSSCSSEESSCCHHHHH------HHSCCGGGCCEEEEESCH-HHHHHTTHHHHHHH
T ss_pred             EEEEecccccCcccceeehHHHHHH------HhcCCCcCCcEEEEeCCH-HHHHHHHHHHHHHc
Confidence            7777777654    24555443322      233   238899999998 89875 56666654

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.67  E-value=8.8e-18  Score=152.40  Aligned_cols=126  Identities=14%  Similarity=0.099  Sum_probs=83.3

Q ss_pred             CCCCCC---CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCC
Q 006868          464 GSLPRP---PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGG  540 (628)
Q Consensus       464 g~F~lp---~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~  540 (628)
                      |.|.++   ...+++||||+|||||||+|++++....... ..++++|+||+|+.++.+|.+++..+.+.++...     
T Consensus         1 G~f~l~~~~~~~k~lv~IAgGtGIaP~~s~l~~~~~~~~~-~~~~v~l~~g~r~~~~~~~~~~~~~~~~~~~~~~-----   74 (146)
T d2cnda2           1 GSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPE-DHTEMHLVYANRTEDDILLRDELDRWAAEYPDRL-----   74 (146)
T ss_dssp             SCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTT-CCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTE-----
T ss_pred             CeEEeCCCCCCCCEEEEEeceEEHhHHHHHHHHHHHhCCc-cCceEEEEEeecccccchhHHHHhhHHHhCCCce-----
Confidence            677775   3457999999999999999999998765421 1378999999999999999999999998755442     


Q ss_pred             cEEEEEecCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHH-HHHHHHH
Q 006868          541 GFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSD-VWSTFEE  596 (628)
Q Consensus       541 ~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~-v~~~L~~  596 (628)
                      ..+...+....    .+++......+..+.......+++.+|||||+ .|.+. |++.|.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~vyiCGp~-~m~~~av~~~L~~  134 (146)
T d2cnda2          75 KVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPP-PMIQFAISPNLEK  134 (146)
T ss_dssp             EEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCH-HHHHTTTHHHHHT
T ss_pred             eEEEeeccccCcccccccccCccchHHHHHhcccCCCCcEEEEECCH-HHHHHHHHHHHHH
Confidence            34444433222    12222222222212211111236789999998 88875 5555554

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.65  E-value=5.3e-16  Score=138.71  Aligned_cols=118  Identities=25%  Similarity=0.414  Sum_probs=99.7

Q ss_pred             CCCcccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCcc
Q 006868          225 NNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK  303 (628)
Q Consensus       225 ~~~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~  303 (628)
                      +.+.++|. +|+++++||.+++.+.++||+|+++ ..+.|+||++|+|.|++..+                         
T Consensus        14 y~p~~P~~a~V~~~~~lt~~~~~~~t~~i~~~~~-~~~~y~pGQ~v~v~~p~~~~-------------------------   67 (136)
T d1fnda1          14 FKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHE-GEIPYREGQSVGVIPDGEDK-------------------------   67 (136)
T ss_dssp             BBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECT-TCCCCCTTCEEEEECSSBCT-------------------------
T ss_pred             ecCCCCeEEEEEeEEEccCCCCCceEEEEecccC-CCCcccCCCEEEEECCCccc-------------------------
Confidence            34455677 9999999999999999999999997 68999999999999974220                         


Q ss_pred             CCCCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHh
Q 006868          304 NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVL  383 (628)
Q Consensus       304 ~~~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l  383 (628)
                                                    .                             +                   
T Consensus        68 ------------------------------~-----------------------------~-------------------   69 (136)
T d1fnda1          68 ------------------------------N-----------------------------G-------------------   69 (136)
T ss_dssp             ------------------------------T-----------------------------S-------------------
T ss_pred             ------------------------------c-----------------------------c-------------------
Confidence                                          0                             0                   


Q ss_pred             hhCCCCCCCHHHHHHhcCCCcccceeeccCCCC---CCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE
Q 006868          384 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW  460 (628)
Q Consensus       384 ~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~  460 (628)
                                       .++.+|.|||||+|..   ..+.++|+|+.+.|.+..++.+.|+||+||++|++  ||+|.+.
T Consensus        70 -----------------~~~~~R~YSIaSsP~~~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~dLk~--GD~V~v~  130 (136)
T d1fnda1          70 -----------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKP--GAEVKLT  130 (136)
T ss_dssp             -----------------SBCCCEEEECCSCTTCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHTCCT--TCEEEEE
T ss_pred             -----------------ccceeEEeecccCCcCCCCCCcEEEEEEEEeecccCCCcCCCceEehhhccCCC--cCEEEEe
Confidence                             1246899999999954   34789999999999988788889999999999999  9999999


Q ss_pred             eecCC
Q 006868          461 FQKGS  465 (628)
Q Consensus       461 ~~~g~  465 (628)
                      +|.|+
T Consensus       131 GP~Gk  135 (136)
T d1fnda1         131 GPVGK  135 (136)
T ss_dssp             EEECS
T ss_pred             CCCCC
Confidence            99985

>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Flavodoxin FldA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.60  E-value=2e-15  Score=142.35  Aligned_cols=119  Identities=19%  Similarity=0.218  Sum_probs=103.1

Q ss_pred             CCcEEEEEECCcchHHHHHHHHHHHHHh-CCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868            6 RNKLLILYASQTGNALDAAERIGRESER-RGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS   84 (628)
Q Consensus         6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~-~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~   84 (628)
                      |++|+|+|.|.||||+++|+.|++.+++ .|+++++.++++.+++++.++|.+||++||| .|.++..++.|++.+....
T Consensus         1 M~kilivy~S~~G~T~~~A~~ia~g~~~~~g~~v~~~~~~~~~~~dl~~~d~iiiGsPty-~g~~~~~~~~fld~~~~~~   79 (184)
T d2arka1           1 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTN-MGLVSWKMKRFFDDVLGDL   79 (184)
T ss_dssp             CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHTGGGT
T ss_pred             CCeEEEEEECCCcHHHHHHHHHHHhhhhccCceEEEeecccccccchhhCcEEEEecCcc-ccccCHHHHHHHHHHHHHH
Confidence            6789999999999999999999999987 6899999999999999999999999999999 9999999999999986532


Q ss_pred             CcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEe
Q 006868           85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV  127 (628)
Q Consensus        85 ~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v  127 (628)
                      ..  .++|+.+++||.+....+-...+...+.+.|..+|+..+
T Consensus        80 ~~--~l~gK~~a~f~s~g~~~gG~e~al~~~~~~l~~~G~~vv  120 (184)
T d2arka1          80 WG--EIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVF  120 (184)
T ss_dssp             TT--SCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEEC
T ss_pred             HH--HhCCeEEEEEEccCCCCccHHHHHHHhhhHhhhCCCEEe
Confidence            22  389999999998554443334467889999999999876

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.58  E-value=7.3e-15  Score=131.11  Aligned_cols=120  Identities=26%  Similarity=0.441  Sum_probs=98.3

Q ss_pred             Ccccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCC
Q 006868          227 KAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNY  305 (628)
Q Consensus       227 ~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~  305 (628)
                      ...+|. +|+++++||+++...+++||+|++++..+.|+|||+++|+|+|...                           
T Consensus         9 ~~~P~~a~V~~~~~lt~~~~~~~v~~i~~~~~~~~~~y~pGQ~v~v~~p~~~~---------------------------   61 (133)
T d2bmwa1           9 PNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK---------------------------   61 (133)
T ss_dssp             TTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCT---------------------------
T ss_pred             CCCCeEEEEEEEEEccCCCCCceEEEEEEccCCccCCccCCCEEEEEeccccc---------------------------
Confidence            345677 9999999999999999999999998778999999999999996320                           


Q ss_pred             CCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhh
Q 006868          306 LPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLED  385 (628)
Q Consensus       306 ~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~  385 (628)
                                               ..                                                     
T Consensus        62 -------------------------~~-----------------------------------------------------   63 (133)
T d2bmwa1          62 -------------------------NG-----------------------------------------------------   63 (133)
T ss_dssp             -------------------------TS-----------------------------------------------------
T ss_pred             -------------------------cc-----------------------------------------------------
Confidence                                     00                                                     


Q ss_pred             CCCCCCCHHHHHHhcCCCcccceeeccCCCCC---CCeEEEEEEEEEeecC-CCCcccccccHHhhCcCCCCCceEEEEe
Q 006868          386 FPSVQMPIDWLVQLVPPLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTP-YKRKRTGLCSVWLAGLDPQQGIYIPAWF  461 (628)
Q Consensus       386 f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~---~~~i~l~V~~v~~~~~-~~~~~~G~~S~~L~~l~~~~G~~v~i~~  461 (628)
                                     ....+|.|||||+|...   .+.++|+|+.+.+.+. .+..+.|+||+||++|++  ||+|.+.+
T Consensus        64 ---------------~~~~~R~YSias~p~~~~~~~~~~~~~Vk~~~~~~~~~~~~~~G~~S~yL~~lk~--GD~v~v~G  126 (133)
T d2bmwa1          64 ---------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEP--GSEVKITG  126 (133)
T ss_dssp             ---------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCT--TCEEEEEE
T ss_pred             ---------------cccceeeeeecCCCcCCCCCccEEEEEEEeccccccccCCCCCcEehhhHhhCCC--CCEEEEeC
Confidence                           01258999999998543   3579999988776443 355678999999999999  99999999


Q ss_pred             ecCCCCC
Q 006868          462 QKGSLPR  468 (628)
Q Consensus       462 ~~g~F~l  468 (628)
                      |.|+|.|
T Consensus       127 P~G~~fL  133 (133)
T d2bmwa1         127 PVGKEML  133 (133)
T ss_dssp             EECSSSC
T ss_pred             CccceeC
Confidence            9999865

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.58  E-value=5.3e-16  Score=142.51  Aligned_cols=128  Identities=18%  Similarity=0.315  Sum_probs=84.7

Q ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccC--CCCcEEEEEec
Q 006868          471 PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEA--KGGGFYVAFSR  548 (628)
Q Consensus       471 ~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~--~~~~~~~a~Sr  548 (628)
                      +.+++||||+|||||||+||++++......   ++++++||+|+.+|++|.++|..+...+......  ..+.+....++
T Consensus         6 p~~~lvlIagGtGIaP~~sil~~~~~~~~~---~~~~l~~g~r~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (158)
T d1a8pa2           6 PGKHLYMLSTGTGLAPFMSLIQDPEVYERF---EKVVLIHGVRQVNELAYQQFITEHLPQSEYFGEAVKEKLIYYPTVTR   82 (158)
T ss_dssp             CCSEEEEEEEGGGGHHHHHHTTCHHHHHHC---SEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESS
T ss_pred             CCCCEEEEEchhhHHHHHHHHHHHHHhCCC---CceeeeeccccHHHHhhHHHHHHHHhhhhhhhhccccceEEEEeccc
Confidence            357899999999999999999998776544   8999999999999999999999887753221000  00033444555


Q ss_pred             CCC-CccchhhhHHHcH--HHHH-HHH-hCCCEEEEeCCCCCCHHHHHHHHHHHHHHhC
Q 006868          549 KQP-QKVYVQHKMLEQS--QRIW-NLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEG  602 (628)
Q Consensus       549 ~~~-~k~yVqd~l~~~~--~~v~-~~l-~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~  602 (628)
                      ... ..+...+......  +.+. ..+ .+++.||||||+ +|.++|.++|.+......
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yiCGp~-~m~~~v~~~L~~~G~~~~  140 (158)
T d1a8pa2          83 ESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICGSP-SMLDESCEVLDGFGLKIS  140 (158)
T ss_dssp             SCCSSBSCHHHHHHSSHHHHHHTCCCCCTTTEEEEEEECH-HHHHHHHHHHHHTTCCBC
T ss_pred             ccccccccccchhccchhhhhhhccccCcccceEEEECCH-HHHHHHHHHHHHcCCCcc
Confidence            443 2222222221110  0100 011 237899999998 999999999988654443

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.46  E-value=2.2e-14  Score=132.28  Aligned_cols=103  Identities=16%  Similarity=0.239  Sum_probs=79.0

Q ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCC
Q 006868          471 PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ  550 (628)
Q Consensus       471 ~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~  550 (628)
                      ...++||||+|||||||++++++..+++     .+++++||+|+++|.+|.+||+++...          .+++......
T Consensus         7 ~~~kvllIAgG~GitPl~sm~~~l~~~~-----~~v~l~~g~r~~~~~~~~~el~~~~~~----------~~~~~~~~~~   71 (160)
T d1ep3b2           7 STDKILIIGGGIGVPPLYELAKQLEKTG-----CQMTILLGFASENVKILENEFSNLKNV----------TLKIATDDGS   71 (160)
T ss_dssp             TTSEEEEEEEGGGSHHHHHHHHHHHHHT-----CEEEEEEEESSGGGCCCHHHHHTSTTE----------EEEEEETTCS
T ss_pred             CCCEEEEEEeeeeHHHHHHHHHHHHhcc-----CceEEEEecCCHHHHHHHHHHHHhhCC----------CccccccCcc
Confidence            4457999999999999999999887654     689999999999999999999987665          4444443322


Q ss_pred             -CCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868          551 -PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  596 (628)
Q Consensus       551 -~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  596 (628)
                       ..+++|.+++.+.       ..+...+|+|||. .|.+.|.+.+.+
T Consensus        72 ~~~~g~v~~~~~~~-------~~~~~~vy~CGP~-~m~~~v~~~~~~  110 (160)
T d1ep3b2          72 YGTKGHVGMLMNEI-------DFEVDALYTCGAP-AMLKAVAKKYDQ  110 (160)
T ss_dssp             SSEESCHHHHHHHC-------CSCCSEEEEESCH-HHHHHHHHHTTT
T ss_pred             ccccccHHHHHHhh-------ccccceeeeeccc-hHHHHHHHHHHh
Confidence             2467777765443       2347899999998 998887766543

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.25  E-value=5.4e-12  Score=120.34  Aligned_cols=119  Identities=18%  Similarity=0.184  Sum_probs=91.2

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC-------------------------ccCCCCCCeEEEEE
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-------------------------ARCLPEEDTVIFVV   61 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~-------------------------~~~l~~~~~vi~~~   61 (628)
                      |||+|+|+|.||||+++|+.+++.+++.|.+++++++.+..                         .+++.++|.|||++
T Consensus         3 mkilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~aD~ii~gs   82 (201)
T d1ydga_           3 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS   82 (201)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE
T ss_pred             cEEEEEEeCCCcHHHHHHHHHHHHHHhcCCEEEEEEccccCccchhhhhhHhhcCCCcccCchhhhhhhHhhCCEeEEec
Confidence            78999999999999999999999999999999999987642                         23445899999999


Q ss_pred             ecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEe
Q 006868           62 STTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV  127 (628)
Q Consensus        62 sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v  127 (628)
                      ||| .|.++..++.|++++.... ....+.|+..++|+.+.....-...+...+...+...|...+
T Consensus        83 Pvy-~~~~s~~~k~flDr~~~~~-~~~~l~gK~~~~~~s~g~~~gg~e~~~~~~~~~~~~~g~~~v  146 (201)
T d1ydga_          83 PTR-FGGATSQMRAFIDTLGGLW-SSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLT  146 (201)
T ss_dssp             EEE-TTEECHHHHHHHHTTHHHH-HTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEEC
T ss_pred             cee-eeeccchhHHHHHHhhhHH-hccccCCceeeeeeccccCCCchHHHHHhHHHHHHHcCCccc
Confidence            999 8999999999999753221 112388999999998655443333344555555555555543

>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.22  E-value=1.8e-11  Score=115.98  Aligned_cols=119  Identities=24%  Similarity=0.185  Sum_probs=94.8

Q ss_pred             CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC-------------------ccCCCCCCeEEEEEecCCCC
Q 006868            7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-------------------ARCLPEEDTVIFVVSTTGQG   67 (628)
Q Consensus         7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~-------------------~~~l~~~~~vi~~~sT~g~G   67 (628)
                      +||+|+|+|.+|||+.+|+.+++.+++.|++++++++.+..                   .+++.++|.|||++||| .|
T Consensus         2 ~Kvliiy~S~~GnT~~la~~i~~g~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ii~gsP~y-~~   80 (196)
T d2a5la1           2 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR-FG   80 (196)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECB-TT
T ss_pred             CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCEEEEEeccccchHHHHhccccccccccccchhhhhhcCEEEEecchh-hc
Confidence            58999999999999999999999999999999999987642                   33456899999999999 89


Q ss_pred             CCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEe
Q 006868           68 DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV  127 (628)
Q Consensus        68 ~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v  127 (628)
                      .+|..++.|++++..... ...+.++..+.+..+-........+...+...+...|...+
T Consensus        81 ~~~~~~k~flDr~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v  139 (196)
T d2a5la1          81 NMASPLKYFLDGTSSLWL-TGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL  139 (196)
T ss_dssp             BCCHHHHHHHHTCHHHHH-HTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred             cccHHHHHHHHHhhhHhh-cCCccCceeEEeecccccCCchHHHHHHHHHHHhhhceeee
Confidence            999999999997643221 12356777777776666666666677777778888777655

>d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Hypothetical protein SP1951
domain: Hypothetical protein SP1951
species: (Streptococcus pneumoniae) [TaxId: 1313]

Probab=98.53  E-value=2.9e-07  Score=88.82  Aligned_cols=148  Identities=16%  Similarity=0.122  Sum_probs=105.8

Q ss_pred             CCcEEEEEECCc--chHHHHHHHHHHHHHhCC-CCcEEeeCCCCCccC----------------------------CCCC
Q 006868            6 RNKLLILYASQT--GNALDAAERIGRESERRG-CPVVVRPVDDYDARC----------------------------LPEE   54 (628)
Q Consensus         6 ~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g-~~v~~~~l~~~~~~~----------------------------l~~~   54 (628)
                      |++|+|+.||..  |+|.++|+.+.+.+++.| ++++++++.+.+...                            +.+.
T Consensus         1 MkkI~ii~gS~r~~s~t~~l~~~~~~~l~~~~~~e~~~~~l~~~~i~~~~~~~~~c~~~~~~~~~~~d~~~~i~~~i~~A   80 (232)
T d1sqsa_           1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLES   80 (232)
T ss_dssp             CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEEeccccccchhhhHHHHhhhcccccccchHHHHHHHHHHHhC
Confidence            789999999965  999999999999998776 578888876654311                            2258


Q ss_pred             CeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeee
Q 006868           55 DTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGD  134 (628)
Q Consensus        55 ~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d  134 (628)
                      |.+||++|+| .|..|..++.|++++.... ....+.|+..+++..+-.+-.  ..+...|...|..+|++.+...+...
T Consensus        81 D~iI~~sP~y-~~~~s~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~g~--~~~~~~l~~~l~~~G~~~v~~~~~~~  156 (232)
T d1sqsa_          81 DIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESNGS--DNVSEYLRDIFSYMGGQILHQVSITN  156 (232)
T ss_dssp             SEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSCCS--CCHHHHHHHHHHHTTCEEEEEEEEEG
T ss_pred             CEEEEEeccc-cCcchHHHHHHHHHhHhhh-ccccccCCeEEEEEEccCCcH--HHHHHHHHHHHHHCCCEEeceeEEec
Confidence            9999999999 8999999999999986432 223488999998876322211  12567888899999999886544433


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHh
Q 006868          135 DQHPSGYEGALDPWMRSLWRRLHQ  158 (628)
Q Consensus       135 ~~~~~g~~~~~~~W~~~l~~~l~~  158 (628)
                      ... ...++.+.+-...+.+.+..
T Consensus       157 ~~~-~~~~~~~~~~~~~~~~~i~~  179 (232)
T d1sqsa_         157 SLK-DIAEAQLMEATYKIEDVLEG  179 (232)
T ss_dssp             GGG-GGHHHHHHHHHHHHHHHHTT
T ss_pred             CCC-chhhHHHHHHHHHHHHHHhc
Confidence            222 22455555555555555543

>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Putative arsenical resistance protein
species: Shigella flexneri [TaxId: 623]

Probab=98.53  E-value=6.4e-07  Score=86.11  Aligned_cols=122  Identities=15%  Similarity=0.064  Sum_probs=96.8

Q ss_pred             cCCCcEEEEEEC--CcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccC----------------CCCCCeEEEEEecCC
Q 006868            4 EKRNKLLILYAS--QTGNALDAAERIGRESERRGCPVVVRPVDDYDARC----------------LPEEDTVIFVVSTTG   65 (628)
Q Consensus         4 ~~~~~v~I~Y~S--~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~----------------l~~~~~vi~~~sT~g   65 (628)
                      .+..||+|++||  ..+++.++|+.+.+.+++.|.+++++++.+++...                +...|.+||++|+| 
T Consensus        32 ~~~~KIl~I~GS~R~~s~s~~la~~~~~~l~~~G~ev~~idL~dlpl~~~~~~~~~~~v~~l~~~l~~AD~vIi~tP~Y-  110 (233)
T d2fzva1          32 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPER-  110 (233)
T ss_dssp             CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEE-
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHHHHhhhcCeEEEEEccCCCCCCCcccccCCHHHHHHHHHHhhcCeeEEEcccc-
Confidence            456799999999  57789999999999999999999999999876432                22689999999999 


Q ss_pred             CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868           66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV  128 (628)
Q Consensus        66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~  128 (628)
                      +|.+|..++.|++|+.........+.|+.+++++.+...-.. . +...+...|..+|+..+-
T Consensus       111 ~~~~~~~lKn~iD~~~~~~~~~~~~~gK~~~ii~~sgg~gg~-~-a~~~Lr~~l~~lg~~vvp  171 (233)
T d2fzva1         111 HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGSQSF-N-AVNTLRLLGRWMRMFTIP  171 (233)
T ss_dssp             TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSSCCC-H-HHHHHHHHHHHTTCEECS
T ss_pred             ccCcHHHHHhhHHhcccccccchhccCceeEeeeeccCcchH-H-HHHHHHHHHhhCCCEEEC
Confidence            999999999999998544333445889999999876543222 2 345677888899988663

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=1.3e-08  Score=84.92  Aligned_cols=65  Identities=18%  Similarity=0.111  Sum_probs=53.1

Q ss_pred             CCCHHHHHHhcCCC---cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecC-C
Q 006868          390 QMPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-S  465 (628)
Q Consensus       390 ~~p~~~l~~~lp~~---~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-~  465 (628)
                      ..||||+...+|..   ..|+|||+|+|  +++.++|+|         ++...|.+|+||+++++  ||+|.+.+|+| .
T Consensus        30 f~pGQ~v~l~~~~~g~~~~R~YSi~s~p--~~~~~~~~v---------k~~~~G~~S~~l~~lk~--GD~v~v~gP~~g~   96 (99)
T d1fdra1          30 FTAGQFTKLGLEIDGERVQRAYSYVNSP--DNPDLEFYL---------VTVPDGKLSPRLAALKP--GDEVQVVSEAAGF   96 (99)
T ss_dssp             CCTTCEEEEEECC---CEEEEEECCSCT--TCSSEEEEE---------ECCTTCSSHHHHHTCCT--TCEEEEESSCBCC
T ss_pred             CCCCcEEEeccCCCCCcEEEEEccCCCC--CCceeEEEE---------EEecCcHHHHHHhhCCC--CCEEEECcCCCCE
Confidence            46899987777743   57999999998  457899998         44577999999999999  99999999764 5


Q ss_pred             CC
Q 006868          466 LP  467 (628)
Q Consensus       466 F~  467 (628)
                      |.
T Consensus        97 F~   98 (99)
T d1fdra1          97 FV   98 (99)
T ss_dssp             CS
T ss_pred             EE
Confidence            54

>d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Azobenzene reductase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.50  E-value=7.4e-07  Score=81.54  Aligned_cols=138  Identities=11%  Similarity=0.138  Sum_probs=96.3

Q ss_pred             CcEEEEEEC--CcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccC-------------------CCCCCeEEEEEecCC
Q 006868            7 NKLLILYAS--QTGNALDAAERIGRESERRGCPVVVRPVDDYDARC-------------------LPEEDTVIFVVSTTG   65 (628)
Q Consensus         7 ~~v~I~Y~S--~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~-------------------l~~~~~vi~~~sT~g   65 (628)
                      |||++++||  ..|||+++++.+.+.++     ++++++.+++...                   +.+.|.+||++|.| 
T Consensus         1 MKIl~I~GS~r~~s~t~~l~~~~~~~~~-----~~~idl~~~~lp~~~~~~~~~~~~~~~~l~~~i~~aD~vIi~sP~Y-   74 (171)
T d1nni1_           1 MNMLVINGTPRKHGRTRIAASYIAALYH-----TDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEY-   74 (171)
T ss_dssp             CCEEEEECCCCTTCHHHHHHHHHHHHHT-----CEEEETTTSCCCCCCCCHHHHTSHHHHHHHHHHHHCSEEEEEEECB-
T ss_pred             CEEEEEECCCCCcChHHHHHHHHHhhCC-----ceEEEcccCCCCCccccccccccHHHHHHHHHhhccCceEEechHH-
Confidence            579999999  78999999999988764     6788887765321                   23789999999999 


Q ss_pred             CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc-----eeeeCCCCCC
Q 006868           66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER-----GLGDDQHPSG  140 (628)
Q Consensus        66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~-----~~~d~~~~~g  140 (628)
                      +|.+|..++.|++|+...     .+.++.+++++.+-....- -.+...+...|..+|+..+...     ...|..+. .
T Consensus        75 ~~~~~~~lKn~iD~~~~~-----~~~~K~~~~~~~s~g~~gg-~~~~~~l~~~l~~l~~~v~~~~~~~~~~~~~~~~~-~  147 (171)
T d1nni1_          75 HSGMSGALKNALDFLSSE-----QFKYKPVALLAVAGGGKGG-INALNNMRTVMRGVYANVIPKQLVLDPVHIDVENA-T  147 (171)
T ss_dssp             TTBCCHHHHHHHHHCCHH-----HHTTCEEEEEEECCSTTTT-HHHHHHHHHHHHHTTCEECSCCEEECGGGEEGGGT-E
T ss_pred             hcccchhHhHHHHHhccc-----ccCCCeEEEEEEeeCccch-HHHHHHHHHHHHHCCCEEECCeEEeccceeccCCC-c
Confidence            999999999999997432     3789999998874322222 2345667788889998865322     22222111 1


Q ss_pred             chhhHHHHHHHHHHHHH
Q 006868          141 YEGALDPWMRSLWRRLH  157 (628)
Q Consensus       141 ~~~~~~~W~~~l~~~l~  157 (628)
                      ..+.+.+.++.+.+.|.
T Consensus       148 ~~e~~~~~l~~~~~~l~  164 (171)
T d1nni1_         148 VAENIKESIKELVEELS  164 (171)
T ss_dssp             ECHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            33455556666666554

>d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Hypothetical protein Ylr011wp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=2e-07  Score=86.73  Aligned_cols=112  Identities=18%  Similarity=0.159  Sum_probs=88.8

Q ss_pred             CcEEEEEECC--cchHHHHHHHHHHHHHhC------CCCcEEeeCCCCCcc-----------------------------
Q 006868            7 NKLLILYASQ--TGNALDAAERIGRESERR------GCPVVVRPVDDYDAR-----------------------------   49 (628)
Q Consensus         7 ~~v~I~Y~S~--tGnte~~A~~l~~~l~~~------g~~v~~~~l~~~~~~-----------------------------   49 (628)
                      |||+|++||.  .|+|.++|+.+.+.+++.      |++++++++.+++..                             
T Consensus         1 MKIlvI~GS~R~~s~~~~la~~~~~~l~~~~~~~~~g~~v~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
T d1t0ia_           1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR   80 (185)
T ss_dssp             CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred             CEEEEEeCCCCCCChHHHHHHHHHHHHHHhhhhcCCCcEEEEEeccccCccccchhhhccccccccccccCCHHHHHHHH
Confidence            6799999995  689999999999999864      788899887543210                             


Q ss_pred             CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868           50 CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV  128 (628)
Q Consensus        50 ~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~  128 (628)
                      .+.+.|.+||++|.| +|.+|.-++.|++|+..      .+.||.+++++.|.+.  - -.+...+...|..+|+..+.
T Consensus        81 ~i~~AD~iIi~tP~Y-~~~~~~~lK~~iD~~~~------~~~gKpv~ivs~g~~g--g-~~a~~~L~~~l~~~g~~vv~  149 (185)
T d1t0ia_          81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLYH------EWHGKPALVVSYGGHG--G-SKCNDQLQEVLHGLKMNVIG  149 (185)
T ss_dssp             HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCST------TTTTCEEEEEEEETTT--T-HHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHhCCCeEEEEeee-cCCCcHHHHHHHHHhhH------HHCCCEEEEEEEcCcc--h-HHHHHHHHHHHHHCCCEEcC
Confidence            123689999999999 89999999999998743      2889999999876442  1 23456788999999998764

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=1.9e-08  Score=83.61  Aligned_cols=67  Identities=15%  Similarity=0.137  Sum_probs=54.3

Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCCC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR  468 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~l  468 (628)
                      ..||||+...+|....|+|||+|+| .+++.++|+|         +....|..|.||. .+++  |+.|.|.+|.|.|.|
T Consensus        30 f~~GQ~v~l~~~~~~~r~ySias~p-~~~~~l~l~i---------r~~~~g~~s~~l~~~l~~--G~~v~v~gP~G~~~l   97 (97)
T d1qfja1          30 FRAGQYLMVVMDERDKRPFSMASTP-DEKGFIELHI---------GASEINLYAKAVMDRILK--DHQIVVDIPHGEAWL   97 (97)
T ss_dssp             CCTTCEEEEESSSSCEEEEECCSCT-TSTTCEEEEE---------C------CCHHHHHHHHH--HSEEEEEEEECSCCC
T ss_pred             cCCCCEEEEEEcCCCcEEEEEEEcC-CCCcEEEEEE---------eEccCCchhHhHhhcCCC--CCEEEEeccCCceEC
Confidence            4689999999999999999999999 4678999999         4456799999995 6999  999999999998764

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.39  E-value=3.5e-08  Score=82.26  Aligned_cols=64  Identities=17%  Similarity=0.111  Sum_probs=52.7

Q ss_pred             CCCHHHHHHhcCCC---cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE-eecCC
Q 006868          390 QMPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGS  465 (628)
Q Consensus       390 ~~p~~~l~~~lp~~---~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~-~~~g~  465 (628)
                      ..||||+...+|..   ..|+|||+|+|  .++.++++|         ++...|.+|+||++|++  ||+|.+. +|.|.
T Consensus        31 f~aGQ~~~l~~~~~g~~~~R~ySi~S~p--~~~~~~~~i---------~~~~~G~~S~~L~~l~~--Gd~v~v~~gP~G~   97 (99)
T d1a8pa1          31 FENGQFVMIGLEVDGRPLMRAYSIASPN--YEEHLEFFS---------IKVQNGPLTSRLQHLKE--GDELMVSRKPTGT   97 (99)
T ss_dssp             CCTTCEEEEEEEETTEEEEEEEECCSCT--TSSEEEEEE---------ECCSSCSSHHHHTTCCT--TCEEEEESCCBCS
T ss_pred             cCCCcEEEEeccCCCceeEeeccccCCC--CCCcEEEEE---------EEeCCCChhHHHHhCCC--CCEEEECCCCcee
Confidence            35899988877743   35999999998  567888887         33467999999999999  9999997 89997


Q ss_pred             C
Q 006868          466 L  466 (628)
Q Consensus       466 F  466 (628)
                      |
T Consensus        98 l   98 (99)
T d1a8pa1          98 L   98 (99)
T ss_dssp             C
T ss_pred             E
Confidence            6

>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Hypothetical protein PA1204
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.31  E-value=1.1e-06  Score=80.67  Aligned_cols=117  Identities=13%  Similarity=0.098  Sum_probs=90.9

Q ss_pred             CcEEEEEEC--CcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc-------C-----------CCCCCeEEEEEecCCC
Q 006868            7 NKLLILYAS--QTGNALDAAERIGRESERRGCPVVVRPVDDYDAR-------C-----------LPEEDTVIFVVSTTGQ   66 (628)
Q Consensus         7 ~~v~I~Y~S--~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~-------~-----------l~~~~~vi~~~sT~g~   66 (628)
                      |||+++.||  ..++++.+|+.+.+.+. .|.+++++++.+++.-       .           +...|.+||++|.| +
T Consensus         1 MKIl~i~GS~r~~s~s~~l~~~~~~~~~-~~~ev~~idl~dlP~~~~d~~~~~~~~~~~~~~~~i~~aD~iii~sP~y-~   78 (174)
T d1rtta_           1 IKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEY-N   78 (174)
T ss_dssp             CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEE-T
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHhcC-CCCEEEEEecccCCCccccccccCCCHHHHHHHHHhhcCCeEEEEccch-h
Confidence            679999999  56779999999988765 4889999999886421       1           12679999999999 9


Q ss_pred             CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868           67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV  128 (628)
Q Consensus        67 G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~  128 (628)
                      |..|.-++.|++|+...  +...+.||.+++++.+-..+... .+...+...|..+|+..+.
T Consensus        79 ~s~~~~lKn~iD~l~~~--~~~~~~gK~~~~i~~sgG~~~~~-~~~~~l~~~l~~~g~~~i~  137 (174)
T d1rtta_          79 YSMAGVLKNAIDWASRP--PEQPFSGKPAAILGASAGRFGTA-RAQYHLRQTLVFLDVHPLN  137 (174)
T ss_dssp             TEECHHHHHHHHHHTCS--SSCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHHTCEECC
T ss_pred             ccccHHHHHHHHHHhcc--cccccCCCEEEEEEECCCccchH-HHHHHHHHHHHHCCCEEcC
Confidence            99999999999999643  23458999999998754333322 3556778888889998763

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=98.31  E-value=3.6e-08  Score=84.00  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=56.2

Q ss_pred             CCCHHHHHHhcCC-----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeec
Q 006868          390 QMPIDWLVQLVPP-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQK  463 (628)
Q Consensus       390 ~~p~~~l~~~lp~-----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~  463 (628)
                      ..||||+...++.     ...|+|||+|+|  .++.++|+|..+.    .+....|..|+||. +|++  ||.|.+.+|.
T Consensus        35 ~~~GQ~v~l~~~~~~~~~~~~R~ySi~s~p--~~~~~~~~v~~~~----~~~~~~G~~S~~l~~~l~~--Gd~v~v~gP~  106 (111)
T d1cqxa2          35 FEPGQYTSVAIDVPALGLQQIRQYSLSDMP--NGRTYRISVKREG----GGPQPPGYVSNLLHDHVNV--GDQVKLAAPY  106 (111)
T ss_dssp             CCTTCEEEEEEEETTTTEEEEEEEECCSCC--CSSCEEEEEECCC----BTTBCCCHHHHHHHHHCCT--TCEEEECCCB
T ss_pred             CCCCCEEEEEeecCCCcceeeeeccccCCc--cCCCeEEEEEEec----CCCcccchhHHHHHhcCCC--CCEEEEEccC
Confidence            3689998776652     358999999998  5678999985431    13445799999996 6999  9999999999


Q ss_pred             CCCCC
Q 006868          464 GSLPR  468 (628)
Q Consensus       464 g~F~l  468 (628)
                      |.|.|
T Consensus       107 G~F~L  111 (111)
T d1cqxa2         107 GSFHI  111 (111)
T ss_dssp             CSCSC
T ss_pred             eEeEC
Confidence            99976

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

Probab=98.28  E-value=6.1e-08  Score=82.88  Aligned_cols=76  Identities=20%  Similarity=0.090  Sum_probs=60.5

Q ss_pred             CCHHHHHHhcCCC---cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCC
Q 006868          391 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP  467 (628)
Q Consensus       391 ~p~~~l~~~lp~~---~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~  467 (628)
                      .|+|++...++..   ..|+||++|+| .+++.++|+|+........+....|..|.||.+|++  ||+|.+++|.|.|.
T Consensus        34 ~~Gq~v~v~~~~~~~~~~R~Ys~~s~~-~~~~~~~~~ik~~~~~~~~~~~~gG~~s~~l~~l~~--Gd~v~i~gP~G~F~  110 (114)
T d2cnda1          34 PIGKHIFVCATIEGKLCMRAYTPTSMV-DEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPV--GSYIDVKGPLGHVE  110 (114)
T ss_dssp             CTTCEEEEEEEETTEEEEEEECCCSCT-TCCSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCT--TCEEEEEEEECSEE
T ss_pred             cceEEEEEEeecccceEEeeeccCCCC-CCCCEEEEEEEeccCCCccccccCchhHHHHhhCCC--CCEEEEECCceeeE
Confidence            4788887766532   48999999998 567899999976543333344567999999999999  99999999999997


Q ss_pred             CC
Q 006868          468 RP  469 (628)
Q Consensus       468 lp  469 (628)
                      +.
T Consensus       111 y~  112 (114)
T d2cnda1         111 YT  112 (114)
T ss_dssp             CC
T ss_pred             EC
Confidence            64

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=98.27  E-value=1.5e-07  Score=78.47  Aligned_cols=64  Identities=22%  Similarity=0.227  Sum_probs=54.4

Q ss_pred             CCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCC
Q 006868          391 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLP  467 (628)
Q Consensus       391 ~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~  467 (628)
                      .||||+...+|.. ..|+|||+|+|  .++.++++|.         +...|.+|+||. .+++  ||+|.+.+|.|.|.
T Consensus        35 ~pGQ~v~l~i~g~~~~r~ys~~~~~--~~~~~~~~i~---------~~~~G~~s~~l~~~l~~--Gd~v~v~gP~G~Ff  100 (100)
T d1krha1          35 LAGQYVNVTLPGTTETRSYSFSSQP--GNRLTGFVVR---------NVPQGKMSEYLSVQAKA--GDKMSFTGPFGSFY  100 (100)
T ss_dssp             CTTCEEEEECTTSSCEEEEECCSCT--TCSEEEEEEE---------CCTTCHHHHHHHTTCCT--TCEEEEEEEECSCS
T ss_pred             CCCEEEEEEECCcceeEEeeccCCC--ccCceEEEEE---------EeeCCchhhhhhccCCC--CCEEEEeccccccC
Confidence            6999998888854 68999999998  5678899883         456799999996 6999  99999999999984

>d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Hypothetical protein YwqN
domain: Hypothetical protein YwqN
species: Bacillus subtilis [TaxId: 1423]

Probab=98.26  E-value=1.1e-06  Score=80.65  Aligned_cols=115  Identities=16%  Similarity=0.106  Sum_probs=83.5

Q ss_pred             cEEEEEEC--CcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc------------------------cCCCCCCeEEEEE
Q 006868            8 KLLILYAS--QTGNALDAAERIGRESERRGCPVVVRPVDDYDA------------------------RCLPEEDTVIFVV   61 (628)
Q Consensus         8 ~v~I~Y~S--~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~------------------------~~l~~~~~vi~~~   61 (628)
                      ||+|++||  ..|||+.+|+.+.+     |++++.+++.+++.                        +.+.+.|.+||++
T Consensus         1 KIlii~gSpr~~gnt~~l~~~~~~-----g~e~e~i~l~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD~ii~~s   75 (179)
T d1rlia_           1 KIAVINGGTRSGGNTDVLAEKAVQ-----GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFAT   75 (179)
T ss_dssp             CEEEEESSCSSCCHHHHHHHHHHT-----TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHc-----CCCeeEEEhhhhccCCccchhhhhcCCCCccHHHHHHHHHHHhCCeEEEee
Confidence            68999999  58999999998875     55677777765442                        1233799999999


Q ss_pred             ecCCCCCCChhHHHHHHHHHhccC------cccccCCcEEEEEecCCcChh-HHHHHHHHHHHHHHhcCCeEee
Q 006868           62 STTGQGDTPDSMKVFWRFLLQKSL------SKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVV  128 (628)
Q Consensus        62 sT~g~G~~p~~~~~F~~~L~~~~~------~~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L~~lGa~~v~  128 (628)
                      |+| .|.+|..++.|++++.....      ....++|++++++..|-..+. .+..+.+.+...|.-+|.+.+.
T Consensus        76 P~y-~~~~~a~lK~~iDr~~~~~~~~~~~~~~~~~~~K~~~~i~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~~  148 (179)
T d1rlia_          76 PIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKG  148 (179)
T ss_dssp             ECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEE
T ss_pred             ccc-CCCccHHHHHHHHHHHHhccccccCCcccccCCCEEEEEEecCCCCcchHHHHHHHHHHHHhhcCCEEcc
Confidence            999 99999999999998754211      112477888888887755554 3455667788888888988653

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=98.24  E-value=1.5e-07  Score=78.82  Aligned_cols=63  Identities=19%  Similarity=0.202  Sum_probs=53.5

Q ss_pred             CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCccccc-ccHHhh-CcCCCCCceEEEEeecC
Q 006868          390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGL-CSVWLA-GLDPQQGIYIPAWFQKG  464 (628)
Q Consensus       390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~-~S~~L~-~l~~~~G~~v~i~~~~g  464 (628)
                      ..||||+...+|.-..|+|||+|+| .+++.++|+|         ++...|. +|+||+ ++++  ||+|.+.+|.+
T Consensus        39 f~pGQ~v~v~~~~~~~R~YSl~s~p-~~~~~~~i~V---------k~~~~g~~~S~~l~~~l~~--Gd~v~v~~Prn  103 (103)
T d2piaa1          39 FEAGANLTVAVPNGSRRTYSLCNDS-QERNRYVIAV---------KRDSNGRGGSISFIDDTSE--GDAVEVSLPRN  103 (103)
T ss_dssp             CCTTCEEEEECTTSCEEEEECCSCT-TCCSEEEEEE---------ECCTTSCSHHHHHHHSCCT--TCEEEECCCBC
T ss_pred             CCCCceEEEEEecceeEEEEEecCC-CCCCEEEEEE---------EEECCCccchHHHHhcCCC--CCEEEEeCCcC
Confidence            4689999888988788999999998 4678999999         4556776 599996 8999  99999998864

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=98.17  E-value=2.6e-07  Score=78.18  Aligned_cols=62  Identities=16%  Similarity=0.225  Sum_probs=53.2

Q ss_pred             CCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecC
Q 006868          391 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG  464 (628)
Q Consensus       391 ~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g  464 (628)
                      .||||+...+|.. ..|+|||+|+| .+.+.++|+|         +....|.+|+||. ++++  |++|.+.+|.|
T Consensus        45 ~pGQ~v~l~~~g~~~~R~ySias~p-~~~~~~~~~i---------~~~~~G~~S~~l~~~l~~--Gd~v~i~gP~G  108 (109)
T d1tvca1          45 EPGQFMDLTIPGTDVSRSYSPANLP-NPEGRLEFLI---------RVLPEGRFSDYLRNDARV--GQVLSVKGPLG  108 (109)
T ss_dssp             CSCCEEEECTTSCSSSEEECCBCCS-SSSCCEEEEE---------CCCTTSSSHHHHHHHSSS--SSEEEEEEEEC
T ss_pred             CCCcEEEEEECCccccccceeccCC-cCCceeEEEE---------EEeCCchHHHHHHhhCCC--CCEEEEeCCcc
Confidence            5899987778754 68999999998 4667999998         5567899999995 6999  99999999987

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=2.9e-07  Score=77.59  Aligned_cols=65  Identities=23%  Similarity=0.365  Sum_probs=54.1

Q ss_pred             CCCHHHHHHhcCC-----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeec
Q 006868          390 QMPIDWLVQLVPP-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQK  463 (628)
Q Consensus       390 ~~p~~~l~~~lp~-----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~  463 (628)
                      ..|+|++...++.     ...|+|||+|.|  +.+.++|+|         ++...|..|+||+ +|++  ||+|.+.+|.
T Consensus        37 ~~pGQ~v~l~~~~~~~~~~~~r~~s~ss~~--~~~~~~i~v---------k~~~~G~~S~~l~~~l~~--Gd~v~v~gP~  103 (107)
T d1gvha2          37 YRPGQYLGVWLKPEGFPHQEIRQYSLTRKP--DGKGYRIAV---------KREEGGQVSNWLHNHANV--GDVVKLVAPA  103 (107)
T ss_dssp             CCTTCEEEEEECCTTCSSCEEEEEECCSCC--CSSCEEEEE---------ECCTTCHHHHHHHHTCCT--TCEEEEEEEE
T ss_pred             CCCCCEEEEEeeccccCceEEeeccccCCC--CCCceEEEE---------EEcCCcchhHHHHhcCCC--CCEEEEeCcc
Confidence            4689998777663     246999999987  677899998         4457899999996 7999  9999999999


Q ss_pred             CCCC
Q 006868          464 GSLP  467 (628)
Q Consensus       464 g~F~  467 (628)
                      |.|.
T Consensus       104 G~Ff  107 (107)
T d1gvha2         104 GDFF  107 (107)
T ss_dssp             CSCC
T ss_pred             ccCC
Confidence            9984

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=98.08  E-value=4.4e-07  Score=75.57  Aligned_cols=64  Identities=20%  Similarity=0.144  Sum_probs=53.7

Q ss_pred             CCHHHHHHhcCCC---cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCC
Q 006868          391 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  466 (628)
Q Consensus       391 ~p~~~l~~~lp~~---~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F  466 (628)
                      .||||+...+|..   ..|+|||+|++ ...+.++|.|.         ....|..|.||+++++  ||+|.+.+|.|++
T Consensus        34 ~pGQfv~l~~~~~~~~~~R~~Si~~~~-~~~~~i~~~i~---------~~~~g~~t~~l~~l~~--Gd~v~v~GP~G~~  100 (101)
T d1ep3b1          34 LPGQFLHLAVPNGAMLLRRPISISSWD-KRAKTCTILYR---------IGDETTGTYKLSKLES--GAKVDVMGPLGNG  100 (101)
T ss_dssp             STTCEEEECCSCTTCCSCEEEECCEEE-TTTTEEEEEEE---------CCCTTSHHHHHHTCCT--TCEEEEEEEESBC
T ss_pred             CCCceEEEEccCCccEeeccceeeeCC-CCCcEEEEEEe---------ecCcchhhHHHHhCCC--CCEEEEecccCCC
Confidence            5899998888743   46999999997 57789999883         3456889999999999  9999999999953

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: Quinone reductase type 2 (menadione reductase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.7e-05  Score=74.27  Aligned_cols=151  Identities=21%  Similarity=0.169  Sum_probs=99.8

Q ss_pred             CCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc----------------------------------
Q 006868            6 RNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDAR----------------------------------   49 (628)
Q Consensus         6 ~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~----------------------------------   49 (628)
                      .|||+|+|||-  .++|..+++.+.+.+++.|.+|++++|.+....                                  
T Consensus         2 ~mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (230)
T d2qwxa1           2 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLA   81 (230)
T ss_dssp             CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBC
T ss_pred             CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCEEEEEEccccCCcccchHHHhhhccCchhhhcchhhhhhhhhccccc
Confidence            58999999994  467999999999999999999999999654321                                  


Q ss_pred             --------CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc--------CcccccCCcEEEEEec-CCc--ChhH--H
Q 006868           50 --------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS--------LSKQWLEGVRYAVFGL-GDS--GYQK--F  108 (628)
Q Consensus        50 --------~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~--------~~~~~l~~~~~aVfGl-Gds--~y~~--f  108 (628)
                              .|...|.|||++|.| .+.+|.-++.|++++....        .+...++++++.++.. |..  .|..  +
T Consensus        82 ~di~~~~~~l~~AD~iv~~~P~y-~~~~pa~lK~~iDrV~~~g~af~~~~~~~~g~l~~kk~~~i~t~g~~~~~~~~~g~  160 (230)
T d2qwxa1          82 SDITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGV  160 (230)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTGGGSTTST
T ss_pred             HHHHHHHHHHHhCCEEEEEeCcc-cccCCHHHHHHHHHhcccCcccccCCCCCcccccCCeEEEEeccCCchhhcccccc
Confidence                    133589999999999 9999999999999864321        1233466777666544 332  2211  1


Q ss_pred             HHHHHHHH-----HHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhh
Q 006868          109 NFVAKKLD-----NRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI  159 (628)
Q Consensus       109 ~~a~~~l~-----~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~  159 (628)
                      ......+.     ..+.-+|.+.+.........  ...+++..+|.+++.+.|...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l  214 (230)
T d2qwxa1         161 NGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPE--IASEEERKGMVAAWSQRLQTI  214 (230)
T ss_dssp             TCCHHHHHHHHHCCCCCTTTCEECCCEEECCTT--TSCHHHHHHHHHHHHHHHHTG
T ss_pred             cccHHHHHHHHHHHHHHhCCCeEcceEEEecCC--CCCHHHHHHHHHHHHHHHHHH
Confidence            11122222     22334587766443332222  225667888888887777654

>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: NAD(P)H:quinone reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=6.2e-05  Score=73.68  Aligned_cols=153  Identities=17%  Similarity=0.110  Sum_probs=103.3

Q ss_pred             CCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc----------------------------------
Q 006868            6 RNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDAR----------------------------------   49 (628)
Q Consensus         6 ~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~----------------------------------   49 (628)
                      .|||+|+|||-  .++|..+|+.+.+.+++.|.+|++++|-+....                                  
T Consensus         2 ~KKiLiI~ahP~~~S~~~aL~~~~~~~l~~~G~eV~~~DLy~~~f~P~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (273)
T d1d4aa_           2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLS   81 (273)
T ss_dssp             CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBC
T ss_pred             CCeEEEEEcCCCCccHHHHHHHHHHHHHHHCCCEEEEEECcccCCCCcCCHHHHhhhhcccccccchhhhhhhhcccCCc
Confidence            47899999994  478999999999999999999999998653211                                  


Q ss_pred             --------CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc--------CcccccCCcEEEE-EecCCc--ChhH--H
Q 006868           50 --------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS--------LSKQWLEGVRYAV-FGLGDS--GYQK--F  108 (628)
Q Consensus        50 --------~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~--------~~~~~l~~~~~aV-fGlGds--~y~~--f  108 (628)
                              .|...|.|||++|.| .+.+|.-++.|++..-...        ...+.++|++..+ +..|..  .|..  +
T Consensus        82 dDi~~~~~~l~~AD~IV~~~P~y-w~s~PA~LK~~iDRV~~~G~af~~~~~~~~g~l~gKk~~~ivTtGg~~~~y~~~g~  160 (273)
T d1d4aa_          82 PDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGI  160 (273)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTTBT
T ss_pred             HHHHHHHHHHHhCCEEEEECChh-hcCCCHHHHHHHHHhccCCcccccCCCCCCCcccCCeEEEEEecCCChhhhccccc
Confidence                    133688999999999 8999999999999875321        1233567776655 544543  2321  2


Q ss_pred             HH----HHHHHHH-HHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCC
Q 006868          109 NF----VAKKLDN-RLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP  161 (628)
Q Consensus       109 ~~----a~~~l~~-~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~  161 (628)
                      +.    ..+.+.. .|.-+|.+.+.+........  ..++...+|++++.+.|...+.
T Consensus       161 ~~~~~~~l~~~~~~i~~f~G~~~l~~~~~~~~~~--~~~~~r~~~le~~~~~l~~L~~  216 (273)
T d1d4aa_         161 HGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGH--TPADARIQILEGWKKRLENIWD  216 (273)
T ss_dssp             TCCHHHHHHHHHTTTTGGGTCEECCCEEETTGGG--SCHHHHHHHHHHHHHHHTTGGG
T ss_pred             cCCHHHHHHHHHHHHHHhcCCeecceEEEecCCC--CCHHHHHHHHHHHHHHHHhhcc
Confidence            21    1222222 24447888776655433321  2567778888888887765443

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=6.2e-06  Score=70.99  Aligned_cols=62  Identities=24%  Similarity=0.129  Sum_probs=48.4

Q ss_pred             cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCC
Q 006868          404 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPR  468 (628)
Q Consensus       404 ~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~l  468 (628)
                      ..|+||++|++ ..++.++|+|++.......+...+|..|.||++|++  ||.|.|++|.|.|..
T Consensus        60 ~~R~Ys~~s~~-~~~g~~~~~vk~~~~~~~~~~~~Gg~~s~~l~~l~~--GD~v~v~gP~G~F~y  121 (124)
T d1umka1          60 VVRPYTPISSD-DDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQI--GDTIEFRGPSGLLVY  121 (124)
T ss_dssp             EEEEECCSSCT-TCCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCT--TCEEEEEEEECSEEE
T ss_pred             EEEeeccCCcc-cCCceEEEEEEecccccccccCCCcchHHHHhcCCC--CCEEEEECCeeeeEE
Confidence            56999999998 577899999965432222122356788899999999  999999999999864

>d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: ACP phosphodiesterase AcpD
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=0.00021  Score=66.38  Aligned_cols=145  Identities=12%  Similarity=0.080  Sum_probs=100.5

Q ss_pred             cEEEEEECCc--c-hHHHHHHHHHHHHHhC--CCCcEEeeCCCCCcc---------------------------------
Q 006868            8 KLLILYASQT--G-NALDAAERIGRESERR--GCPVVVRPVDDYDAR---------------------------------   49 (628)
Q Consensus         8 ~v~I~Y~S~t--G-nte~~A~~l~~~l~~~--g~~v~~~~l~~~~~~---------------------------------   49 (628)
                      ||+|+=||--  | +|.++++.+.+.+++.  +.+|..+|+.+.++.                                 
T Consensus         2 KiLvi~~Spr~~~S~S~~L~~~f~e~~~~~~~~~eV~~~DL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   81 (200)
T d2z98a1           2 KVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIA   81 (200)
T ss_dssp             EEEEEECCSSGGGCHHHHHHHHHHHHHHHHSTTSEEEEEETTTTTCCCCCHHHHHHC------CCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcCCHHHHhhhcCCccccCHHHHHHHHHHHHHHH
Confidence            6899999985  3 8899999999999877  456777887664431                                 


Q ss_pred             CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcChh--HHHHHHHHHHHHH
Q 006868           50 CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGYQ--KFNFVAKKLDNRL  119 (628)
Q Consensus        50 ~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~y~--~f~~a~~~l~~~L  119 (628)
                      ++...|.|||++|.| .+.+|..++.|++++.....        +...+.+++..|+..+...|.  .+..+...+...|
T Consensus        82 ~i~~AD~iv~~sP~y-~~~~pa~lK~~IDr~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (200)
T d2z98a1          82 ELKAHDVIVIAAPMY-NFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTFL  160 (200)
T ss_dssp             HHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEECCCSCEEEEEEECSSCCTTSTTCCHHHHHHHHH
T ss_pred             HHHhcCcEEEEEccc-cccCCHHHHHHHHHhhcCCccccccCCCchhcccCceEEEEEecCCCccccchhhhHHHHHHHH
Confidence            122589999999999 99999999999999853221        122466788888777655554  3455667778888


Q ss_pred             HhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868          120 LDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL  156 (628)
Q Consensus       120 ~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l  156 (628)
                      .-+|++.+.. ..++... . ..+..+++.++..+.+
T Consensus       161 ~~~G~~~v~~-i~~~g~~-~-~~e~~~~~~~~A~~~~  194 (200)
T d2z98a1         161 GFIGITDVKF-VFAEGIA-Y-GPEMAAKAQSDAKAAI  194 (200)
T ss_dssp             HHTTCCCEEE-EEECCTT-S-CHHHHHHHHHHHHHHH
T ss_pred             HhCCCeEEEE-EEEeccc-C-CHHHHHHHHHHHHHHH
Confidence            8999987644 3333221 1 3345556666544444

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.00  E-value=0.55  Score=41.98  Aligned_cols=70  Identities=14%  Similarity=0.151  Sum_probs=43.4

Q ss_pred             CCcEEEE-EECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006868            6 RNKLLIL-YASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ   82 (628)
Q Consensus         6 ~~~v~I~-Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~   82 (628)
                      |++|+|+ ||+.  +|..++    +.|++.|..++++.- +.+..++..++.+|+..+-.+.-+..+.+..+.+++..
T Consensus         1 m~ki~iiD~g~~--~~~~i~----r~l~~lg~~~~i~~~-d~~~~~~~~~dgiIl~Gg~~~~~~~~~~~~~l~~~~~~   71 (196)
T d2a9va1           1 MLKIYVVDNGGQ--WTHREW----RVLRELGVDTKIVPN-DIDSSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDD   71 (196)
T ss_dssp             CCBEEEEEESCC--TTCHHH----HHHHHTTCBCCEEET-TSCGGGGTTCSEEEEEEECSCGGGTGGGHHHHHHHHHH
T ss_pred             CCEEEEEECCCc--HHHHHH----HHHHHCCCeEEEEeC-CCCHHHHhcCCcEEEeccccccccccchhhhHHHHHhh
Confidence            6777776 7744  344444    455557888888763 44567788889888855433333444556666666544