Citrus Sinensis ID: 006876

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------
Protein Sequence
MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccccEEccccccccccHHHHHHHHHHHHcccccEEEEcccEEEcccccccccccccEEEEEcccccEEEEcccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccHHHHHHHHHccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHccEEEcccccccccHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHccccccccccccHHHHcccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccccccccEEEEccccccHHHHHHHHHHHHHHccccHHEEEHHHHHHHHHccccccccccEEEEEccccccEEEEEEcccccHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHcccccHHcccccEccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccEEEEccHHHHHHHccccHHHHccccccHHHHHHHHHcccccccHHHHHHHHccEEEcccccccccHHHHHHHHHHHHcccccEEEEEcccccccEEEHHHHHHHHHHHHcHHEEcHHHHHcccccEEEEccccccc
Coil and Loop (DISEMBL)
MEYILDFAFDrlgangseidhpvlitecvcnpvhsrSKMAELLFETygvpsvafgvDAAFSYkynqqygicnkdglaicpgfstthvipfvegepvyrgscrtniggyhITDYLKQLLslkhpqhmtKLTWEKVEDLKmehcyiapdyfseaqLFQKGTKEaehktrcwqlpwvpppteeppseEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFlsdtgyvsRQEIESTLVKLTQSLRKAKGERKVEQAELEKtdasmnekyplihipdnMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEerrlenpeLYVEQMRAKYKELSEKIDQRKrlktngnhtngnntsggvgrgerLNAAQRERMRLLTTAafdrgkgedtfgakdeDWQLYKLMsrdnddddeemDENEAELARISARLqevdptfvpkqesgptqsaaeiprvrpltkedFQIVLgverfrcpeilfrpnwvgidqvgldemtgvsirrlptkdeDLEQRLTSSilmtggcclfpGMSERLEAGIrmirpcgapikvvraldpvldawrGASVyatklqfpqqtfsrmdyYEKGENWLRRYQLQYTL
Flexible Loop (DISEMBL)
MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTrcwqlpwvpppteeppseEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTqslrkakgerkveqaelektdasmnekyplIHIPDNMLSLEQLKEKRRQIFLktttegrqrakqkrveeeleqekknqeeeerrlenpelyVEQMRAKYKELSEKIDQrkrlktngnhtngnntsggvgrgERLNAAQRERMRLLTtaafdrgkgedtfgakdedwqLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPtfvpkqesgptqsaaeiprvrpltkedFQIVLGVErfrcpeilfrpnwvgidqvgldemtgvsirrlptkdedLEQRLTssilmtggCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVyatklqfpqqtfsrMDYYEKGENWLRRYQLQYTL
Low Complexity Region (SEG)
MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVpppteeppseeeiarkaaikerQGQRLREMAEAKRSSRINELENQIHGlefllqqleqveeNDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVeeeleqekknqeeeerrlenPELYVEQMRAKYKELSEKIDQRKRLKtngnhtngnntsggvgrgERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRdnddddeemdeneaeLARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
Disordered region (IsUnstruct)
**YILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWV*******************************************NQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLV********************************LIHI************************************************************************************************************************************WQLY*******************************************************LTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPT****LEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQ***
Disordered Region (DISOPRED)
MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEA*************TRCWQLPWVPPPTEEPP*************************************IHGLEFL*******************GYVSRQEIESTLV*********************************IHIPDNMLSLEQLKEKRRQIF**************************************LYVEQMR******************************************************DRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFV*********************KEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
Disordered Region (DISEMBL)
MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQ*********TRCWQLPWVP************ARKAAIK****************SRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQS***************EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTT*****************************ENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRD*************ELARISARLQEVDPTFV***********AEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
Disordered Region (DISPRO)
*EYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKA*******************EKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLK*******************************LTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQ*TL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRxxxxxxxxxxxxxxxxxxxxxxxxDIAAFLSDTGYVSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELYxxxxxxxxxxxxxxxxxxxxxKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDxxxxxxxxxxxxxxxxxxxxxLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	627	2.2.26 [Sep-21-2011]
Q940Z2	724	Actin-related protein 5 O	yes	no	0.996	0.863	0.736	0.0
A2ZP58	575	Actin-related protein 5 O	yes	no	0.904	0.986	0.586	0.0
A2WKK5	575	Actin-related protein 5 O	N/A	no	0.904	0.986	0.586	0.0
Q9Y7X8	721	Actin-like protein arp5 O	yes	no	0.945	0.822	0.295	2e-70
Q9VEC3	648	Actin-related protein 5 O	yes	no	0.856	0.828	0.284	3e-62
Q54E71	684	Actin-related protein 5 O	yes	no	0.901	0.826	0.305	3e-61
P53946	755	Actin-related protein 5 O	yes	no	0.968	0.803	0.284	9e-61
Q9H9F9	607	Actin-related protein 5 O	yes	no	0.245	0.253	0.414	9e-34
Q80US4	605	Actin-related protein 5 O	yes	no	0.429	0.444	0.335	3e-33
Q293V2	651	Actin-related protein 5 O	yes	no	0.362	0.348	0.338	6e-33

>sp|Q940Z2|ARP5_ARATH Actin-related protein 5 OS=Arabidopsis thaliana GN=ARP5 PE=1 SV=2

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/627 (73%), Positives = 553/627 (88%), Gaps = 2/627 (0%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           MEYILD+AFDRLGANGS IDHP+LITEC CNPV SRSKMAELLFETYGVP+VAFGVDAAF
Sbjct: 97  MEYILDYAFDRLGANGSGIDHPILITECACNPVQSRSKMAELLFETYGVPAVAFGVDAAF 156

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           SYKYNQ +GIC KDG+ +CPGF+TTH IPFV+GEP+Y+GS RTNIGGYH+TDYLKQLLSL
Sbjct: 157 SYKYNQLHGICKKDGIVLCPGFTTTHSIPFVDGEPIYKGSSRTNIGGYHVTDYLKQLLSL 216

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P H ++ TWEK EDLK+EHCYIAPDY SE +LFQ+G KEAE KT  WQLPW+PPPTE 
Sbjct: 217 KYPFHSSRFTWEKAEDLKLEHCYIAPDYASEIRLFQEGRKEAEEKTSYWQLPWIPPPTEV 276

Query: 181 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
           PPSEEEIARKAAI+E+QGQRLREMAEAKR S+IN++ENQ+  L FLL+Q++QVEE+DI  
Sbjct: 277 PPSEEEIARKAAIREKQGQRLREMAEAKRVSKINDMENQLISLRFLLKQVDQVEEDDIPT 336

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASM-NEKYPLIHIPDNML 299
           FLSDTGY SRQE+EST+ K+TQSLRKA+GE K E AE E+   S+ NEKYPL+++PD++L
Sbjct: 337 FLSDTGYASRQELESTITKVTQSLRKARGEPKNEPAEYEENPDSLNNEKYPLMNVPDDIL 396

Query: 300 SLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAK 359
           + EQLK+K+RQ+FLKTT EGR RA+QKR EEELE+EK+NQ EEERR ENPE Y+E+++A+
Sbjct: 397 TPEQLKDKKRQMFLKTTAEGRLRARQKRNEEELEKEKRNQLEEERRRENPESYLEELQAQ 456

Query: 360 YKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDT 419
           YKE+ E+++Q+KRLKTNG+ +NGNN SGG+GRGERL+AAQRERMRLLTTAAFDRGKGEDT
Sbjct: 457 YKEVLERVEQKKRLKTNGS-SNGNNKSGGIGRGERLSAAQRERMRLLTTAAFDRGKGEDT 515

Query: 420 FGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE 479
           FG++DEDWQLYKLMS+DNDDDDE+ D +EAELAR+S+RLQE+DPTFV K E   +Q++ E
Sbjct: 516 FGSRDEDWQLYKLMSKDNDDDDEQPDSDEAELARLSSRLQEIDPTFVQKVEGELSQTSGE 575

Query: 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQ 539
           +PRVRPLT+ED++IV+G+ERFRCPEILF PN +GIDQVGLDEM G SIRRLP  +++LE+
Sbjct: 576 VPRVRPLTEEDYKIVIGIERFRCPEILFHPNLIGIDQVGLDEMAGTSIRRLPHDEKELEE 635

Query: 540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQ 599
           RLTSSILMTGGC L PGM+ERLE GIRMIRPCG+PI VVRA+DPVLDAWRGAS +A  L 
Sbjct: 636 RLTSSILMTGGCSLLPGMNERLECGIRMIRPCGSPINVVRAMDPVLDAWRGASAFAANLN 695

Query: 600 FPQQTFSRMDYYEKGENWLRRYQLQYT 626
           F    F++MDY EKGE+WLR YQ++Y 
Sbjct: 696 FLGNAFTKMDYDEKGEDWLRNYQIRYN 722

Probable subunit of a chromatin-remodeling complex. Involved in DNA repair. Required for multicellular development of all organs.
Arabidopsis thaliana (taxid: 3702)

>sp|A2ZP58|ARP5_ORYSJ Actin-related protein 5 OS=Oryza sativa subsp. japonica GN=ARP5 PE=3 SV=2

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/597 (58%), Positives = 445/597 (74%), Gaps = 30/597 (5%)

Query: 39  MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIP-------FV 91
           M+ELLFETYGVPS+            N  Y       L+I  G     ++        F+
Sbjct: 1   MSELLFETYGVPSIG-----------NDTYLFVPL--LSIVHGSFEVRIVDAKDVSSYFL 47

Query: 92  EGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSE 151
           +GEPV    CRTN+GG+HITD+L+QLLSLK+P H   +TWEK E+LK EHCY+A DY SE
Sbjct: 48  KGEPVLGACCRTNVGGFHITDFLRQLLSLKYPYHSASITWEKAEELKKEHCYVALDYMSE 107

Query: 152 AQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSS 211
            Q+F+   +EAE KTR WQLPWVPPP EEPPSEEE+ARKAA+KE+ GQRLR+MA AKRS 
Sbjct: 108 LQIFKNNKEEAEEKTRYWQLPWVPPPVEEPPSEEELARKAALKEKAGQRLRDMAAAKRSQ 167

Query: 212 RINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGER 271
           +I ELE Q+  LE L++QL+  EE +  A L  +GY+S+QEI+S ++K TQSLRKAKGE 
Sbjct: 168 KIAELEKQLSYLEELMEQLDGAEEEEATAILGRSGYLSQQEIKSAILKATQSLRKAKGES 227

Query: 272 KVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEE 331
              +   EK DAS  +KYPL+ +PD  L+ EQLKEK++QI LKTTTEGR RAKQ+R EEE
Sbjct: 228 NGNE---EKADASGVDKYPLVSVPDETLTPEQLKEKKKQILLKTTTEGRMRAKQRRAEEE 284

Query: 332 LEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGN-NTSGGVG 390
             +EK   +EEERRLENPELY+E++RA+Y ELS+++DQRKR K NG  TNGN N+SGGVG
Sbjct: 285 ALREK---QEEERRLENPELYLEELRARYSELSDRVDQRKRQKLNGGKTNGNHNSSGGVG 341

Query: 391 RGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAE 450
           RGERLNAAQ+ERMRLLT+AAFDRGKGEDTFG +DEDW +YK MS+DNDDDD+  D++E+E
Sbjct: 342 RGERLNAAQKERMRLLTSAAFDRGKGEDTFGTRDEDWLVYKKMSKDNDDDDDGNDDDESE 401

Query: 451 LARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPN 510
           LARI++++Q++DPTFV K E+   Q   E P+VR LT ED++I +G+ERFRCPEILF+P 
Sbjct: 402 LARIASKIQDMDPTFVNKAEA--VQQTPEPPKVRTLTAEDYRISIGIERFRCPEILFQPG 459

Query: 511 WVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP 570
            +GIDQ G+DEM  +S+RRL  +DE +++RL  SIL+TGGC L PGM  RLE+GIR  RP
Sbjct: 460 MIGIDQAGIDEMVSISLRRL-MEDEAVKERLCQSILVTGGCSLIPGMIPRLESGIRQFRP 518

Query: 571 CGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL 627
             +P+K+VRA DP++DAWRGA+ +A   +F + TFS  DY E GEN   RY + Y+L
Sbjct: 519 YLSPLKLVRAADPLIDAWRGAAAFAASSKFGRHTFSLADYREHGENLFHRYNIVYSL 575

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WKK5|ARP5_ORYSI Actin-related protein 5 OS=Oryza sativa subsp. indica GN=ARP5 PE=2 SV=2

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/597 (58%), Positives = 445/597 (74%), Gaps = 30/597 (5%)

Query: 39  MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIP-------FV 91
           M+ELLFETYGVPS+            N  Y       L+I  G     ++        F+
Sbjct: 1   MSELLFETYGVPSIG-----------NDTYLFVPL--LSIVHGSFEVRIVDAKDVSSYFL 47

Query: 92  EGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSE 151
           +GEPV    CRTN+GG+HITD+L+QLLSLK+P H   +TWEK E+LK EHCY+A DY SE
Sbjct: 48  KGEPVLGACCRTNVGGFHITDFLRQLLSLKYPYHSASITWEKAEELKKEHCYVALDYMSE 107

Query: 152 AQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSS 211
            Q+F+   +EAE KTR WQLPWVPPP EEPPSEEE+ARKAA+KE+ GQRLR+MA AKRS 
Sbjct: 108 LQIFKNNKEEAEEKTRYWQLPWVPPPVEEPPSEEELARKAALKEKAGQRLRDMAAAKRSQ 167

Query: 212 RINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGER 271
           +I ELE Q+  LE L++QL+  EE +  A L  +GY+S+QEI+S ++K TQSLRKAKGE 
Sbjct: 168 KIAELEKQLSYLEELMEQLDGAEEEEATAILGRSGYLSQQEIKSAILKATQSLRKAKGES 227

Query: 272 KVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEE 331
              +   EK DAS  +KYPL+ +PD  L+ EQLKEK++QI LKTTTEGR RAKQ+R EEE
Sbjct: 228 NGNE---EKADASGVDKYPLVSVPDETLTPEQLKEKKKQILLKTTTEGRMRAKQRRAEEE 284

Query: 332 LEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGN-NTSGGVG 390
             +EK   +EEERRLENPELY+E++RA+Y ELS+++DQRKR K NG  TNGN N+SGGVG
Sbjct: 285 ALREK---QEEERRLENPELYLEELRARYSELSDRVDQRKRQKLNGGKTNGNHNSSGGVG 341

Query: 391 RGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAE 450
           RGERLNAAQ+ERMRLLT+AAFDRGKGEDTFG +DEDW +YK MS+DNDDDD+  D++E+E
Sbjct: 342 RGERLNAAQKERMRLLTSAAFDRGKGEDTFGTRDEDWLVYKKMSKDNDDDDDGNDDDESE 401

Query: 451 LARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPN 510
           LARI++++Q++DPTFV K E+   Q   E P+VR LT ED++I +G+ERFRCPEILF+P 
Sbjct: 402 LARIASKIQDMDPTFVNKAEA--VQQTPEPPKVRTLTAEDYRISIGIERFRCPEILFQPG 459

Query: 511 WVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP 570
            +GIDQ G+DEM  +S+RRL  +DE +++RL  SIL+TGGC L PGM  RLE+GIR  RP
Sbjct: 460 MIGIDQAGIDEMVSISLRRL-MEDEAVKERLCQSILVTGGCSLIPGMIPRLESGIRQFRP 518

Query: 571 CGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL 627
             +P+K+VRA DP++DAWRGA+ +A   +F + TFS  DY E GEN   RY + Y+L
Sbjct: 519 YLSPLKLVRAADPLIDAWRGAAAFAASSKFGRHTFSLADYREHGENLFHRYNIVYSL 575

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9Y7X8|ARP5_SCHPO Actin-like protein arp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arp5 PE=1 SV=1

 Score =  267 bits (682), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 192/649 (29%), Positives = 328/649 (50%), Gaps = 56/649 (8%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           ME +LD+ F +LG +   ++HP+ +TE + NP + RS M ELLFE Y  PSVA+G+D  F
Sbjct: 98  MEQVLDYTFLKLGID--RMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLF 155

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           S+ +N +    +  G+ +  G + +HVIP + GE +   + R + GG   + YL +L  +
Sbjct: 156 SFYHNTK---PSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQI 212

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSE-AQLFQKGTKEAEHKTRCWQLPWVPPPTE 179
           K+P    K+   + E L  +HC+++ DY  + A    +   E +      Q P+     +
Sbjct: 213 KYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHALDRDILERDEI--VLQFPYTEAAAQ 270

Query: 180 EPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA 239
           E  S+EE+   A  K   G+RL+  A  KR  +  E + ++  L  L QQ   +      
Sbjct: 271 EK-SQEELELIAERKRESGRRLQAQAAIKRKEKAAERDRELATLTELQQQSLVLSRRAFQ 329

Query: 240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKV---EQAELEKTDASMNEKYPLIHIPD 296
             L + G+    ++ + +  +   +R+A+ +++     +  L+ T+  + + +PL+++PD
Sbjct: 330 RALEEAGFEDESQLNAQVKNVQAKIRRAQRDQQRQEESEGSLDVTEIDVEQAFPLLNVPD 389

Query: 297 NMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQM 356
             L    L++KR Q  +K   + R RAK ++  EE  + ++ + +E  RLEN   +V + 
Sbjct: 390 AELDEAGLRQKRHQRLMKANYDARVRAKAEKAIEEAAEAERAEADERLRLENFSTWVNEK 449

Query: 357 RAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFD---- 412
           R  +K L EKI + KRLK   N              +R + A + RM+ L T A +    
Sbjct: 450 RETHKILLEKISKNKRLKFELN--------------DRKSHASQMRMKSLATLASEQPIQ 495

Query: 413 ----RGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPK 468
               + + ED FGA+DEDW++Y  +    +  +EE  +   ++  +  +L E D  F   
Sbjct: 496 KRKRKDQSEDNFGARDEDWKVYHDV-LTAEQLEEERKKLLDQIYSLEKQLLEYDSQFT-- 552

Query: 469 QESGPTQSAAEIPRVRPL--------------TKEDFQIVLGVERFRCPEILFRPNWVGI 514
                T      PR   L                + FQ+ L VE+ R PE++F P+ VGI
Sbjct: 553 --QANTYDTLNDPRATLLYAFTRGVSDFDVNDVAQAFQLHLNVEQIRVPEVIFSPSIVGI 610

Query: 515 DQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAP 574
           DQ G+ E+    ++R   +++   Q+L S++L+TGG    PGM  R++  +  I P G+ 
Sbjct: 611 DQAGILEIMRSILQRHSLEEQ---QKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSS 667

Query: 575 IKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623
           I V RA +P+LDAW+GAS ++   +F     +R +Y EKG  +++ + L
Sbjct: 668 INVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYIKEHSL 716

Component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9VEC3|ARP5_DROME Actin-related protein 5 OS=Drosophila melanogaster GN=Arp5 PE=1 SV=1

 Score =  239 bits (611), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 178/625 (28%), Positives = 294/625 (47%), Gaps = 88/625 (14%)

Query: 2   EYILDFAFDRLGANGSE-IDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           E I D+ F ++G +G + IDHP+++TE + NP   R +M ELLFE YG+PSV++G+DA +
Sbjct: 95  EQIFDYIFTKMGFDGQDKIDHPIILTEALANPNFCRQQMNELLFECYGIPSVSYGIDALY 154

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           S+K++QQ      D L I  G+STTHVIP ++G+       R N+GGYHI  YL +L+ +
Sbjct: 155 SWKHHQQKQKNISDALIISFGYSTTHVIPVLDGKLQLEHVRRLNVGGYHIITYLFRLMQM 214

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P H+  +T  ++E L  EHC+IA DY  E   + +     EH  +  QLP+       
Sbjct: 215 KYPVHLNAITISRMEKLVHEHCHIAVDYKEELVQWAQMDYYDEHIMKI-QLPYNAVTATN 273

Query: 181 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
                E  +K   +     RL ++ + +   ++ E E Q+     L Q  EQ + +    
Sbjct: 274 AMLTAE--QKQEKRRELAHRLLDIKKNREQEKLREDEQQLFVYNKLRQLYEQKKLDKFER 331

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
            L      + ++++S +  +   +++A+     E+A+     +   E+   +  P   +S
Sbjct: 332 ALQQQQIGTLEDLDSLIATINSRIKRAQ-----ERAQSGPRPSKQQERLNKMPKPPEGMS 386

Query: 301 ----LEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQM 356
               L +L+ KR +I       GR++A+Q   ++  EQ K++    + R+          
Sbjct: 387 QADWLAELQGKREKIL------GRKQARQ---QQRSEQAKRHTHAAQERM---------- 427

Query: 357 RAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKG 416
               + +S      KR K NG                                     + 
Sbjct: 428 ----RIISSLAKNEKRRKANGE------------------------------------EE 447

Query: 417 EDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQS 476
           +D FG  D DW +YK ++R N  DD + D +  +L +    L   D        + P QS
Sbjct: 448 DDGFGMNDNDWDVYKRINRYN--DDSDSDADNEKLMQFDKILNHYDAN-TDGNSNVPPQS 504

Query: 477 AAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDED 536
           AA          E++Q+  GVE  R PE+LF+P+ +G  + GL E+    ++  P  +  
Sbjct: 505 AA----------ENYQLHFGVENIRVPEVLFQPSMIGCSEAGLAELIAFVLKLFPAAE-- 552

Query: 537 LEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 596
            +QRL   + +TGGC  F G+ ERL   +  +RP  +   +  + +P L AW GA V+A 
Sbjct: 553 -QQRLVEHVYLTGGCAQFKGLKERLIKELMEMRPFQSKFAIYESDEPTLSAWLGACVHAG 611

Query: 597 KLQFPQQTFSRMDYYEKGENWLRRY 621
           +  F Q   +R D+ E G  + R +
Sbjct: 612 EPTFGQTLTTRQDHQEHGREFFREH 636

Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Drosophila melanogaster (taxid: 7227)

>sp|Q54E71|ARP5_DICDI Actin-related protein 5 OS=Dictyostelium discoideum GN=arpE PE=3 SV=1

 Score =  236 bits (603), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 193/631 (30%), Positives = 322/631 (51%), Gaps = 66/631 (10%)

Query: 2   EYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFS 61
           E I D+ F + G   +EI++PVLITE   NP   R  M+ELLFE Y + SV +G+D+ FS
Sbjct: 101 ESIFDYIFHKFGIE-NEIENPVLITEPTSNPTFCRKYMSELLFECYNIKSVVYGIDSLFS 159

Query: 62  YKYNQ--QYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS 119
           + Y Q  Q+    K+ L I   F+TTH+         ++ + R NIGG   TDYL++L+ 
Sbjct: 160 F-YGQRDQFKDGGKNSLIIGSSFNTTHIYNVQNYNVSHQQTKRINIGGGASTDYLRKLIH 218

Query: 120 LKHPQHMTKLTWEKVEDLKMEHCYIAP-DYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPT 178
           LK+P+H +  T      +K EHCY++   Y  E + F+   + A+ K+   QLP+     
Sbjct: 219 LKYPKHKSYFTQNYTNKIKEEHCYVSQGQYIEELKEFE-NDQLAKEKSVIIQLPYQEIDF 277

Query: 179 EEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDI 238
           E+   EEE  RK   ++  G +LRE+A+ KR  +  ELE+++  LE +L  L+     + 
Sbjct: 278 EKL--EEERQRKIQNRKDLGAKLRELADKKRLEKKTELEDKLASLESIL-ALKTTNVEEF 334

Query: 239 AAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNM 298
              L    Y +    E  L++    L+     +K E  ++E T     E++PL+ I D+ 
Sbjct: 335 QQTLKSKSYAT----EKDLIRDIDDLKDKLFGKKKESEQVEDT-----EEFPLLFIADSE 385

Query: 299 LSLEQLKEKRRQIFLKTTTEGR----QRAKQKRVEEELEQEKKNQEEEERRLENPELYVE 354
           L+ +QLKEK++Q  LK+  +GR    ++  +++ +E+ ++E+++++EEE  L++PE Y++
Sbjct: 386 LNADQLKEKKKQRQLKSMKDGRLAQKRKRDEEKEKEKEKEEERDRQEEESFLKDPEHYLK 445

Query: 355 QMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRG 414
            + ++  ++ EK + R++ K   N    N+                 R+R +        
Sbjct: 446 DLHSRKSKILEKREARQKQKQKANIVQRNS-----------------RLRTIVNPTNHGN 488

Query: 415 KGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPT 474
            GE                 +  + +D E  E   E+A +   L + DPT +    S   
Sbjct: 489 YGE-----------------KGEEVEDPEEAEESREMAILDKLLNKFDPTSI---SSAIV 528

Query: 475 QSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPN-WVGIDQVGLDEMTGVSI-RRLPT 532
               + P     T EDFQ+ LGVER +CPE LF+P   +G+DQ+GL E    SI  +LP 
Sbjct: 529 SHDDQFPIGEYHTAEDFQVSLGVERIKCPETLFQPKAIIGVDQMGLVEAIISSILSQLPV 588

Query: 533 KDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGAS 592
              D  + +T +I +TGG        +R+   I+ IR   +P+ ++++ D  LDAW GA 
Sbjct: 589 ---DTRKLVTENIFLTGGNVNTKHFKDRIHYEIQQIREPYSPLTILKSKDSQLDAWLGAR 645

Query: 593 VYATKLQ--FPQQTFSRMDYYEKGENWLRRY 621
            +    Q  +   + S+ DY EKG ++++ +
Sbjct: 646 KWCLDNQDNWSNVSISKQDYQEKGYDYIKSH 676

Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Dictyostelium discoideum (taxid: 44689)

>sp|P53946|ARP5_YEAST Actin-related protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARP5 PE=1 SV=1

 Score =  235 bits (599), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 187/657 (28%), Positives = 323/657 (49%), Gaps = 50/657 (7%)

Query: 2   EYILDFAFDRLGA---NGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDA 58
           E ILD+ F  LG    NG  I +P+L+TE +      R+   ++LFETY VP V FG+D+
Sbjct: 112 EEILDYTFHHLGVVPDNG--IPNPILLTERLATVQSQRTNWYQILFETYNVPGVTFGIDS 169

Query: 59  AFS-YKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQL 117
            FS Y YN      NK GL I  G   T+VIP V+G  +   + R N GG+   DYL  L
Sbjct: 170 LFSFYNYNPS---GNKTGLVISCGHEDTNVIPVVDGAGILTDAKRINWGGHQAVDYLNDL 226

Query: 118 LSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPW--VP 175
           ++LK+P   TK+++ + E +  ++CY++ +Y  + +      +  +      + P+  V 
Sbjct: 227 MALKYPYFPTKMSYLQYETMYKDYCYVSRNYDEDIEKILT-LENLDTNDVVVEAPFTEVL 285

Query: 176 PPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEE 235
            P +   +EEE+  +A  ++  G+RL+E A  KR  ++ + + +      +  QL    +
Sbjct: 286 QPQK---TEEELRIQAEKRKETGKRLQEQARLKRMEKLVQKQEEFEYFSKVRDQLIDEPK 342

Query: 236 NDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL-EKTDASMNEKYPLIHI 294
             + + L + G+   ++ +  L  L QSL+KA+     + + L E  +    +K+ L+ I
Sbjct: 343 KKVLSVLQNAGFDDERDFKKYLHSLEQSLKKAQMVEAEDDSHLDEMNEDKTAQKFDLLDI 402

Query: 295 PDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVE 354
            D  L+ +Q+KEKR+Q FLK + + RQ+AK+++     E+E+K  +E++ R  +   +++
Sbjct: 403 ADEDLNEDQIKEKRKQRFLKASQDARQKAKEEKERVAKEEEEKKLKEQQWRETDLNGWIK 462

Query: 355 QMRAKYKEL----SEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAA 410
             R K  +L     EK+  R  +K   +  + N         E       +R R   T  
Sbjct: 463 DKRLKLNKLIKRRKEKLKLRDEMKDRKSQVSQNRMKNLASLAEDNVKQGAKRNRHQATID 522

Query: 411 FDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQE 470
            D     DTFGA DEDW +Y  ++++ +  +E ++    ++  +   L E DP F  +  
Sbjct: 523 NDPN---DTFGANDEDWLIYTDITQNPEAFEEALEYEYKDIVELERLLLEHDPNFTEEDT 579

Query: 471 ----------------SGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGI 514
                            GP    +E         E  Q+ L VER R PE++F+P   G 
Sbjct: 580 LEAQYDWRNSILHLFLRGPRPHDSEN------IHEQHQMHLNVERIRVPEVIFQPTMGGQ 633

Query: 515 DQVGLDEMT-GVSIRRLPTKDEDLEQR---LTSSILMTGGCCLFPGMSERLEAGIRMIRP 570
           DQ G+ E++  + +++  ++   L Q    + +++L+TGG    PG+ ER+        P
Sbjct: 634 DQAGICELSETILLKKFGSQPGKLSQTSIDMVNNVLITGGNAKVPGLKERIVKEFTGFLP 693

Query: 571 CGAPIKVVRALDPVLDAWRGASVYA-TKLQFPQQTFSRMDYYEKGENWLRRYQLQYT 626
            G  I V  + DP LDAW+G +  A  + Q+ +   S+ +Y E G  +++ ++L  T
Sbjct: 694 TGTNITVNMSSDPSLDAWKGMAALARNEEQYRKTVISKKEYEEYGPEYIKEHKLGNT 750

Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9H9F9|ARP5_HUMAN Actin-related protein 5 OS=Homo sapiens GN=ACTR5 PE=1 SV=2

 Score =  145 bits (366), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 105/169 (62%), Gaps = 15/169 (8%)

Query: 2   EYILDFAFDRLGANGSE-IDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           E +LD++F  LG +    +DHP+++TE VCNP++SR  M+ELLFE YG+P VA+G+D+ F
Sbjct: 110 ELLLDYSFQHLGVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYGIPKVAYGIDSLF 169

Query: 61  SYKYNQ-QYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS 119
           S+ +N+ +  +C+  GL I  G+  THV+P +EG    +   R N+GG     YL++LL 
Sbjct: 170 SFYHNKPKNSMCS--GLIISSGYQCTHVLPILEGRLDAKNCKRINLGGSQAAGYLQRLLQ 227

Query: 120 LKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRC 168
           LK+P H+  +T  ++E++  EH YIA DY  E            HK RC
Sbjct: 228 LKYPGHLAAITLSRMEEILHEHSYIAEDYVEEL-----------HKWRC 265

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Involved in DNA double-strand break repair and UV-damage excision repair.

Homo sapiens (taxid: 9606)

>sp|Q80US4|ARP5_MOUSE Actin-related protein 5 OS=Mus musculus GN=Actr5 PE=2 SV=3

 Score =  143 bits (361), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 159/277 (57%), Gaps = 8/277 (2%)

Query: 2   EYILDFAFDRLGANGSE-IDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           E +LD++F  LG +    +DHP+++TE VCNP++SR  M+ELLFE Y +P VA+G+D+ F
Sbjct: 110 ELLLDYSFQHLGVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYRIPKVAYGIDSLF 169

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           S+ +N      +  GL I  G+  TH++P +EG    +   R N+GG     YL++LL L
Sbjct: 170 SFYHNVPKNALSS-GLIISSGYQCTHILPVLEGRLDAKNCKRINLGGSQAAGYLQRLLQL 228

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P H+  +T  ++E++  EH YIA DY +E Q +Q      E+     QLP+       
Sbjct: 229 KYPGHLAAITLSRMEEILQEHSYIAEDYGAELQKWQ-CPDYYENNVHKMQLPFSSKLLGS 287

Query: 181 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
             + EE   K   +++Q +RL+E+   +R  ++   + ++  L ++ + LE+ + +    
Sbjct: 288 TLTAEE---KQERRQQQLRRLQELNARRREEKLQLDQERLERLLYVQELLEEGQMDQFHK 344

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAE 277
            L +    S +E++S + KLT ++ +AK  +K+ QAE
Sbjct: 345 ALIELNMDSPEELQSYIQKLTLAVEQAK--QKILQAE 379

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Involved in DNA double-strand break repair and UV-damage excision repair.

Mus musculus (taxid: 10090)

>sp|Q293V2|ARP5_DROPS Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2

 Score =  142 bits (359), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 133/239 (55%), Gaps = 12/239 (5%)

Query: 2   EYILDFAFDRLGANGSE-IDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           E I D+ F ++G  G + I +P+++TE + NP   R  M+ELLFE YG+P+V++G+DA +
Sbjct: 98  EQIFDYIFTKMGFEGEQSIANPIVLTEALANPNFCRQNMSELLFECYGIPAVSYGIDALY 157

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           S+++ Q       D L I  G+STTHVIP + G+   +   R N+GGYHI  YL  L+ +
Sbjct: 158 SWEHYQNRRKKVSDALIISLGYSTTHVIPVLNGKLQLQHVRRLNVGGYHIITYLLCLMQM 217

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P H+  ++  ++E L  EHC+IA DY  E   + +     EH  +  QLP+ P     
Sbjct: 218 KYPVHLNAISISRMEKLVHEHCHIAVDYREELLKWGQMDYYEEHIMKI-QLPYNPVTATN 276

Query: 181 P--PSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEEND 237
               +E+++ ++  +      RL E+   +   ++ E E Q+    F+  +L Q+ E D
Sbjct: 277 ALLTAEQKLEKRREL----AMRLLEIKNRREGEKLLEDEQQL----FVYNKLRQLYEQD 327

Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	627
255581531	639	conserved hypothetical protein [Ricinus	0.998	0.979	0.796	0.0
449459898	720	PREDICTED: actin-related protein 5-like	0.993	0.865	0.785	0.0
225449462	725	PREDICTED: actin-related protein 5 [Viti	1.0	0.864	0.782	0.0
356539860	730	PREDICTED: actin-related protein 5-like	0.998	0.857	0.776	0.0
356539858	724	PREDICTED: actin-related protein 5-like	0.998	0.864	0.776	0.0
356569368	723	PREDICTED: actin-related protein 5-like	0.998	0.865	0.791	0.0
356501071	728	PREDICTED: actin-related protein 5-like	0.998	0.859	0.781	0.0
356501069	722	PREDICTED: actin-related protein 5-like	0.998	0.867	0.781	0.0
334185284	730	actin-related protein 5 [Arabidopsis tha	0.996	0.856	0.736	0.0
227204397	730	AT3G12380 [Arabidopsis thaliana]	0.996	0.856	0.736	0.0

>gi|255581531|ref|XP_002531571.1| conserved hypothetical protein [Ricinus communis] gi|223528801|gb|EEF30807.1| conserved hypothetical protein [Ricinus communis]

 Score = 1010 bits (2612), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/638 (79%), Positives = 574/638 (89%), Gaps = 12/638 (1%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           MEYILDF FDRLGANGS+I+HPVLITECVCNPV SRSKMAELLFETYGVPSVAFGVDAAF
Sbjct: 1   MEYILDFGFDRLGANGSQIEHPVLITECVCNPVQSRSKMAELLFETYGVPSVAFGVDAAF 60

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           SYKYNQQ GIC+KDGLAICPGF+TTHVIPF++GEPVY+G CRTNIGG+H+TDYLKQLLSL
Sbjct: 61  SYKYNQQRGICDKDGLAICPGFTTTHVIPFIDGEPVYKGCCRTNIGGFHVTDYLKQLLSL 120

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P HM + TWEKVEDLKMEHCYIAPDY SEA+LFQKGTKEAE KT+CWQLPWVPPP EE
Sbjct: 121 KYPHHMARFTWEKVEDLKMEHCYIAPDYASEARLFQKGTKEAEDKTKCWQLPWVPPPVEE 180

Query: 181 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
           PPSEEE+ARKAA KERQGQRLREMA  K+S+RIN+LENQ+  L+FLLQQLEQVEE++I +
Sbjct: 181 PPSEEELARKAAAKERQGQRLREMAVLKKSTRINDLENQLRDLKFLLQQLEQVEEDEIPS 240

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELE-KTDASMNEKYPLIHIPDNML 299
           FL DTGYVS+QEIES +V+ TQSLRKAKGE K EQAELE K+D+S NE+YPL+ IPD+ L
Sbjct: 241 FLRDTGYVSKQEIESLIVQKTQSLRKAKGEPKAEQAELEEKSDSSTNERYPLLEIPDDEL 300

Query: 300 SLEQ-----------LKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLEN 348
           + EQ           LKEK++Q+FL+TT  GRQ+AKQKR EEELE+E+KNQ +EE+RLEN
Sbjct: 301 TSEQACSSFHDVSSQLKEKKKQLFLRTTALGRQQAKQKRREEELERERKNQLDEEKRLEN 360

Query: 349 PELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTT 408
           PELY+E+ RAKYKELSEK++QRKRLKTNGNH+NGNN SGGVGRGERLNAAQRERMRLLTT
Sbjct: 361 PELYLEETRAKYKELSEKVEQRKRLKTNGNHSNGNNVSGGVGRGERLNAAQRERMRLLTT 420

Query: 409 AAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPK 468
           AAFDRGKGEDTFGAKDEDWQLYKLMS+DNDDD E  DE+E ELARIS+RLQE+DPTF+PK
Sbjct: 421 AAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDGEGPDEDEVELARISSRLQEIDPTFIPK 480

Query: 469 QESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIR 528
            + GP+Q A E+P+ RPLTKEDFQ++LGVERFRCPEILF PN VGIDQ GLDEM GVSIR
Sbjct: 481 PDVGPSQPANEMPKPRPLTKEDFQVLLGVERFRCPEILFHPNLVGIDQAGLDEMAGVSIR 540

Query: 529 RLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAW 588
           RLP+K+EDLE+RLT+SI +TGG CL+PGMSERLE+GIRMIRP G+PIKVVRALDPVLDAW
Sbjct: 541 RLPSKEEDLEKRLTNSIFITGGSCLYPGMSERLESGIRMIRPNGSPIKVVRALDPVLDAW 600

Query: 589 RGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYT 626
           RGA+ YA  LQFPQQTFSRMDYYEKGE+WLRRYQ  YT
Sbjct: 601 RGAATYAAALQFPQQTFSRMDYYEKGEDWLRRYQFCYT 638

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459898|ref|XP_004147683.1| PREDICTED: actin-related protein 5-like [Cucumis sativus] gi|449503255|ref|XP_004161911.1| PREDICTED: actin-related protein 5-like [Cucumis sativus]

 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/628 (78%), Positives = 565/628 (89%), Gaps = 5/628 (0%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           MEY+LDF FDRLGA+G EIDHPVLITECVCNPV SRSKMAELLFETYGVPS+AFGVDAAF
Sbjct: 97  MEYVLDFGFDRLGASGPEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDAAF 156

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           SY YNQQ GIC+KDGLAICPGF+ +HVIPF++GEPVY+G CRTNIGGYH+TD LKQLLSL
Sbjct: 157 SYLYNQQLGICDKDGLAICPGFTASHVIPFIDGEPVYKGCCRTNIGGYHVTDSLKQLLSL 216

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P HM + TWEKVEDLKMEHCYIA DY SEAQLFQKGTKEAE KTRCWQLPW+PPPTEE
Sbjct: 217 KYPHHMARFTWEKVEDLKMEHCYIASDYASEAQLFQKGTKEAEEKTRCWQLPWIPPPTEE 276

Query: 181 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
           PPSEEEIARKAAIKE+QGQRLREMAEAKRSSRINELEN++ GLEFLL QL QV E+DI +
Sbjct: 277 PPSEEEIARKAAIKEKQGQRLREMAEAKRSSRINELENEVRGLEFLLHQLVQVAEDDIPS 336

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
           FLS+TGY+S+QEIES L K TQSLRKAKGE K EQAE E    ++NEK+ LI++PD++LS
Sbjct: 337 FLSETGYISKQEIESALTKATQSLRKAKGEPKDEQAEAEDHADAINEKFHLINVPDDVLS 396

Query: 301 LEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKY 360
            EQLKEKRRQ+FLKTT+EGRQRAKQKR E ELE+E++NQ +EERR+ENPELY+E++  KY
Sbjct: 397 PEQLKEKRRQLFLKTTSEGRQRAKQKRYEIELERERRNQLDEERRMENPELYLEELHVKY 456

Query: 361 KELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTF 420
           KELSEK++QRKRLKTNG HTNG+N SGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTF
Sbjct: 457 KELSEKVEQRKRLKTNGGHTNGHNVSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTF 516

Query: 421 GAKDEDWQLYKLMSRDND-DDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE 479
           GA+DEDWQLYKLMS+DN+ +DDE  DE+EAEL R+S+RLQ++DP+FVPK +   T    E
Sbjct: 517 GARDEDWQLYKLMSKDNNDEDDEGPDEDEAELVRLSSRLQDIDPSFVPKSDVQTT----E 572

Query: 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQ 539
           +P+ RPLTKEDFQIV+GVERFRCPEILF PNW+G+DQ GLDEMTGVS+RRLP+  +D+ +
Sbjct: 573 LPKFRPLTKEDFQIVMGVERFRCPEILFHPNWIGVDQTGLDEMTGVSLRRLPSYSDDIAE 632

Query: 540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQ 599
           RLT+SIL+TGG CLFPG+ ERLEAGIRMIRPCG+PI+VVRALDP+LDAWRGASVYA   Q
Sbjct: 633 RLTNSILITGGSCLFPGIRERLEAGIRMIRPCGSPIRVVRALDPILDAWRGASVYAAASQ 692

Query: 600 FPQQTFSRMDYYEKGENWLRRYQLQYTL 627
           F  QTFSR+DYYEKGE+WLRRYQL+Y+L
Sbjct: 693 FTTQTFSRLDYYEKGEDWLRRYQLRYSL 720

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449462|ref|XP_002283252.1| PREDICTED: actin-related protein 5 [Vitis vinifera] gi|296086213|emb|CBI31654.3| unnamed protein product [Vitis vinifera]

 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/629 (78%), Positives = 563/629 (89%), Gaps = 2/629 (0%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           MEYILD+ F+R+GA+GS++DHPVLITECVCNPV SRSKMAELLFETYGVPSVAFGVDAAF
Sbjct: 97  MEYILDYGFERMGADGSQVDHPVLITECVCNPVQSRSKMAELLFETYGVPSVAFGVDAAF 156

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           SYKYNQQ GIC+KDGL +CPGF+TTHVIPFV+GEPVY+  CRTNIGG+H++DYLKQLLSL
Sbjct: 157 SYKYNQQLGICDKDGLVVCPGFTTTHVIPFVDGEPVYKACCRTNIGGFHVSDYLKQLLSL 216

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P HM+++TWEKVEDLKMEHCYIA DY SEA+LFQKG KEAE KTRCWQLPWVPPP E 
Sbjct: 217 KYPHHMSRITWEKVEDLKMEHCYIATDYASEARLFQKGGKEAEDKTRCWQLPWVPPPVEG 276

Query: 181 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
            PSEEEIARKAAIKERQGQRLREMAEAKRSSRINELEN++ GLEFLLQQL  VEE DIA 
Sbjct: 277 LPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENELQGLEFLLQQLGNVEEKDIAC 336

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL-EKTDASMNEKYPLIHIPDNML 299
           FL++TGYVS+QEIES+  K+ QSLRKAKGE K EQAE  EK D S  EKYPLI+I DNML
Sbjct: 337 FLAETGYVSKQEIESSRAKVMQSLRKAKGEPKGEQAETEEKVDPSAAEKYPLINISDNML 396

Query: 300 SLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAK 359
           + EQLKEK++Q+FLKTT+EGRQRAKQKR EEELE+E++NQ++EE+RLENPELY+EQ+RAK
Sbjct: 397 TPEQLKEKKKQLFLKTTSEGRQRAKQKRFEEELERERQNQQDEEKRLENPELYLEQLRAK 456

Query: 360 YKELSEKIDQRKRLKTNGNHTNGNNT-SGGVGRGERLNAAQRERMRLLTTAAFDRGKGED 418
           ++ELSEK++QRKR KTNGNHTNGN+  SGGVGRGERLNAAQ+ERMRLLTTAAFDRGKGED
Sbjct: 457 HRELSEKVEQRKRHKTNGNHTNGNHNLSGGVGRGERLNAAQKERMRLLTTAAFDRGKGED 516

Query: 419 TFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAA 478
           TFGA+DEDWQLYKLMS+DND+D+E  D  EAELARIS+RLQ++DP FV K E  P Q   
Sbjct: 517 TFGARDEDWQLYKLMSKDNDEDEEGPDAYEAELARISSRLQDIDPNFVSKSELVPFQPVV 576

Query: 479 EIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLE 538
           E+P  RPL+KEDFQIV GVERFRCPEILF PN VG+DQVG+DEM GVSIRRLP++ + L 
Sbjct: 577 EVPSFRPLSKEDFQIVFGVERFRCPEILFHPNLVGVDQVGVDEMAGVSIRRLPSRSQGLN 636

Query: 539 QRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKL 598
           +R+T+SIL+TGG CLFPG+ ERLEAGIRMIRPCG+PI+VVRA DPVLDAWRGA+VYA  L
Sbjct: 637 ERMTNSILLTGGSCLFPGIRERLEAGIRMIRPCGSPIRVVRASDPVLDAWRGAAVYAASL 696

Query: 599 QFPQQTFSRMDYYEKGENWLRRYQLQYTL 627
           QFP QTFS+ DYYEKGE+WLRRY L+YTL
Sbjct: 697 QFPGQTFSKTDYYEKGEDWLRRYTLRYTL 725

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539860|ref|XP_003538411.1| PREDICTED: actin-related protein 5-like isoform 2 [Glycine max]

 Score =  994 bits (2569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/627 (77%), Positives = 559/627 (89%), Gaps = 1/627 (0%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           MEYILDF FDRLGA GSEIDHPVLITECV NPV SRSKM ELLFETYGVPS+AFGVDAAF
Sbjct: 103 MEYILDFGFDRLGATGSEIDHPVLITECVSNPVQSRSKMGELLFETYGVPSIAFGVDAAF 162

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           SYKYNQQ G+C+KDGLA+CPGF+TTHVIPFV+GEP+Y+G CRTNIGG+H+TDYLKQLLSL
Sbjct: 163 SYKYNQQQGVCDKDGLAMCPGFNTTHVIPFVDGEPIYKGCCRTNIGGFHVTDYLKQLLSL 222

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P HMT+ TWEKVEDLKMEHCYIAPDY SEA+LF KG +EAE KTRCWQLPWVPPPTEE
Sbjct: 223 KYPHHMTRFTWEKVEDLKMEHCYIAPDYASEARLFLKGAREAEEKTRCWQLPWVPPPTEE 282

Query: 181 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
           PPSEEEIARKAAIKERQGQRLREMAEAKRSS+INELEN++HGLEFLL+QLEQV+++++ +
Sbjct: 283 PPSEEEIARKAAIKERQGQRLREMAEAKRSSKINELENELHGLEFLLKQLEQVQDSNVPS 342

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
           FL++TGYVSRQEIES   K+TQSLRKAKGE K EQAE +K   + NEKY LI+IPD+ML+
Sbjct: 343 FLAETGYVSRQEIESARTKVTQSLRKAKGEPKNEQAETDKASPNANEKYSLINIPDDMLT 402

Query: 301 LEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKY 360
            +QL EK++Q+ LK+ +EGRQR KQKR EEELE+++K   EEE RLENPELY+EQ+RA+Y
Sbjct: 403 PDQLIEKKKQLSLKSMSEGRQRLKQKRYEEELERQRKQLLEEETRLENPELYLEQLRARY 462

Query: 361 KELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTF 420
           K+LS K+DQRKRLKTNG H+NGNN +G +GRGERLNA QRERMRLLTTAAFDRGKGEDTF
Sbjct: 463 KDLSVKVDQRKRLKTNGGHSNGNNLAGAIGRGERLNAVQRERMRLLTTAAFDRGKGEDTF 522

Query: 421 GAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVP-KQESGPTQSAAE 479
           GAKDEDWQLYKLMS+D DD DE  DE++AELARIS+RLQ++DPTFVP K E+G +Q AAE
Sbjct: 523 GAKDEDWQLYKLMSKDIDDGDEGPDEDDAELARISSRLQDLDPTFVPNKSEAGSSQPAAE 582

Query: 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQ 539
             R RPLTKEDFQIV GVERFRCPEILF PNW+ +DQ GL EM GVSIRRL  KDE LE+
Sbjct: 583 AQRARPLTKEDFQIVFGVERFRCPEILFNPNWIAVDQAGLHEMAGVSIRRLSCKDEGLEE 642

Query: 540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQ 599
           RLTSSIL+TGG  LFPG++ERLEAGIRMIRPCGAPIKVVRALDPV+DAWRGA+ +A+  Q
Sbjct: 643 RLTSSILVTGGSSLFPGITERLEAGIRMIRPCGAPIKVVRALDPVMDAWRGAAAFASAPQ 702

Query: 600 FPQQTFSRMDYYEKGENWLRRYQLQYT 626
           F  QTFSRMDY+EKGE+WLR YQ++Y+
Sbjct: 703 FHTQTFSRMDYFEKGEDWLRNYQIKYS 729

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539858|ref|XP_003538410.1| PREDICTED: actin-related protein 5-like isoform 1 [Glycine max]

 Score =  994 bits (2569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/627 (77%), Positives = 559/627 (89%), Gaps = 1/627 (0%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           MEYILDF FDRLGA GSEIDHPVLITECV NPV SRSKM ELLFETYGVPS+AFGVDAAF
Sbjct: 97  MEYILDFGFDRLGATGSEIDHPVLITECVSNPVQSRSKMGELLFETYGVPSIAFGVDAAF 156

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           SYKYNQQ G+C+KDGLA+CPGF+TTHVIPFV+GEP+Y+G CRTNIGG+H+TDYLKQLLSL
Sbjct: 157 SYKYNQQQGVCDKDGLAMCPGFNTTHVIPFVDGEPIYKGCCRTNIGGFHVTDYLKQLLSL 216

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P HMT+ TWEKVEDLKMEHCYIAPDY SEA+LF KG +EAE KTRCWQLPWVPPPTEE
Sbjct: 217 KYPHHMTRFTWEKVEDLKMEHCYIAPDYASEARLFLKGAREAEEKTRCWQLPWVPPPTEE 276

Query: 181 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
           PPSEEEIARKAAIKERQGQRLREMAEAKRSS+INELEN++HGLEFLL+QLEQV+++++ +
Sbjct: 277 PPSEEEIARKAAIKERQGQRLREMAEAKRSSKINELENELHGLEFLLKQLEQVQDSNVPS 336

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
           FL++TGYVSRQEIES   K+TQSLRKAKGE K EQAE +K   + NEKY LI+IPD+ML+
Sbjct: 337 FLAETGYVSRQEIESARTKVTQSLRKAKGEPKNEQAETDKASPNANEKYSLINIPDDMLT 396

Query: 301 LEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKY 360
            +QL EK++Q+ LK+ +EGRQR KQKR EEELE+++K   EEE RLENPELY+EQ+RA+Y
Sbjct: 397 PDQLIEKKKQLSLKSMSEGRQRLKQKRYEEELERQRKQLLEEETRLENPELYLEQLRARY 456

Query: 361 KELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTF 420
           K+LS K+DQRKRLKTNG H+NGNN +G +GRGERLNA QRERMRLLTTAAFDRGKGEDTF
Sbjct: 457 KDLSVKVDQRKRLKTNGGHSNGNNLAGAIGRGERLNAVQRERMRLLTTAAFDRGKGEDTF 516

Query: 421 GAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVP-KQESGPTQSAAE 479
           GAKDEDWQLYKLMS+D DD DE  DE++AELARIS+RLQ++DPTFVP K E+G +Q AAE
Sbjct: 517 GAKDEDWQLYKLMSKDIDDGDEGPDEDDAELARISSRLQDLDPTFVPNKSEAGSSQPAAE 576

Query: 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQ 539
             R RPLTKEDFQIV GVERFRCPEILF PNW+ +DQ GL EM GVSIRRL  KDE LE+
Sbjct: 577 AQRARPLTKEDFQIVFGVERFRCPEILFNPNWIAVDQAGLHEMAGVSIRRLSCKDEGLEE 636

Query: 540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQ 599
           RLTSSIL+TGG  LFPG++ERLEAGIRMIRPCGAPIKVVRALDPV+DAWRGA+ +A+  Q
Sbjct: 637 RLTSSILVTGGSSLFPGITERLEAGIRMIRPCGAPIKVVRALDPVMDAWRGAAAFASAPQ 696

Query: 600 FPQQTFSRMDYYEKGENWLRRYQLQYT 626
           F  QTFSRMDY+EKGE+WLR YQ++Y+
Sbjct: 697 FHTQTFSRMDYFEKGEDWLRNYQIKYS 723

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569368|ref|XP_003552874.1| PREDICTED: actin-related protein 5-like [Glycine max]

 Score =  984 bits (2544), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/628 (79%), Positives = 564/628 (89%), Gaps = 2/628 (0%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           MEYILDF FDRLGA GSEIDHPVLITECVCNPV SRSKM ELLFETYGVPS+AFGVDAAF
Sbjct: 97  MEYILDFGFDRLGATGSEIDHPVLITECVCNPVQSRSKMGELLFETYGVPSIAFGVDAAF 156

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           SYKYNQQ G+C+KDGLA+CPGF+TTHVIPFV+GEP+Y+G CRTNIGG+H+TDYLKQLLSL
Sbjct: 157 SYKYNQQQGVCDKDGLAMCPGFNTTHVIPFVDGEPIYKGCCRTNIGGFHVTDYLKQLLSL 216

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P HM + TWEKVEDLKMEHCYIAPDY SEA+LFQKG KEAE KTRCWQLPWVPPPTEE
Sbjct: 217 KYPYHMARFTWEKVEDLKMEHCYIAPDYASEARLFQKGAKEAEEKTRCWQLPWVPPPTEE 276

Query: 181 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
           PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELEN++HGLEFLL+QLEQVE++++ +
Sbjct: 277 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENELHGLEFLLKQLEQVEDSNVPS 336

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
           FL+ TGYVSRQEIES   K+TQSLRKAKGE K EQAE +K   + NEKY LI+IPD+ML+
Sbjct: 337 FLAATGYVSRQEIESARTKVTQSLRKAKGEPKNEQAETDKASPNANEKYSLINIPDDMLT 396

Query: 301 LEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKY 360
            +QL EK++Q+ LK+ +EGRQR KQKR EEELE+E+K Q E+E+RLENPELY+EQ+ A+Y
Sbjct: 397 TDQLIEKKKQLSLKSMSEGRQRLKQKRYEEELERERKQQLEDEKRLENPELYLEQLHARY 456

Query: 361 KELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTF 420
           K+LSEK+DQRKRLKTNG H+NGNN SGG+GRGERLNAAQRERMRLLTTAAFDRGKGEDTF
Sbjct: 457 KDLSEKVDQRKRLKTNGGHSNGNNLSGGIGRGERLNAAQRERMRLLTTAAFDRGKGEDTF 516

Query: 421 GAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVP-KQESGPTQSAAE 479
           GAKDEDWQLYKLM +DNDD DEE DE++AELARIS+RL ++DPTFVP K E+G +Q  AE
Sbjct: 517 GAKDEDWQLYKLMGKDNDDGDEEPDEDDAELARISSRLLDLDPTFVPNKSETGSSQ-PAE 575

Query: 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQ 539
            PR RPLTKEDFQIV GVERFRCPEILF PNW+ +DQ GLDEM GVSIRRL  KDE LE+
Sbjct: 576 APRARPLTKEDFQIVFGVERFRCPEILFNPNWIAVDQAGLDEMAGVSIRRLSCKDESLEE 635

Query: 540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQ 599
           RLTSSIL+TGG  LFPG+ ERLEAGIRMIRPCGAPIKVVRALDPV+DAWRGA+ +A+  Q
Sbjct: 636 RLTSSILVTGGSSLFPGIIERLEAGIRMIRPCGAPIKVVRALDPVMDAWRGAAAFASAPQ 695

Query: 600 FPQQTFSRMDYYEKGENWLRRYQLQYTL 627
           F  QTFSRMDY+EKGE+WLR YQ++Y+L
Sbjct: 696 FHTQTFSRMDYFEKGEDWLRSYQIKYSL 723

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501071|ref|XP_003519352.1| PREDICTED: actin-related protein 5-like isoform 2 [Glycine max]

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/627 (78%), Positives = 556/627 (88%), Gaps = 1/627 (0%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           MEYILDF FDR+GANG+EIDHPVLITECVCNPV SRSKMAELLFETYGVPS+AFGVD AF
Sbjct: 103 MEYILDFGFDRMGANGTEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDVAF 162

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           SYKYNQQ G+C KD LA+CPGF+TTHVIPFV+GEPVY G CRTN+GG+H+TD+LKQLLSL
Sbjct: 163 SYKYNQQQGVCAKDCLALCPGFNTTHVIPFVDGEPVYEGCCRTNVGGFHVTDHLKQLLSL 222

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P H+ + TWEKVEDLKMEHCYIAPDY SE +LFQKG KEAE KTRCWQLPWVPPP EE
Sbjct: 223 KYPYHLARFTWEKVEDLKMEHCYIAPDYVSEVRLFQKGAKEAEEKTRCWQLPWVPPPIEE 282

Query: 181 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
           PPSEEEIARKAAIKE+QGQRLREMAEAKRSS+INELEN++HGLEFL  QLEQVEE+ + +
Sbjct: 283 PPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELHGLEFLFHQLEQVEESKVLS 342

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
           FL++TGY SRQEIES   K+ QSLRKAKGE K EQ E EK D + NEKY LI+IPD+ML+
Sbjct: 343 FLAETGYGSRQEIESARNKVMQSLRKAKGEPKNEQDETEKVDPAANEKYSLINIPDDMLT 402

Query: 301 LEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKY 360
            EQL EK++Q+ LK+  EGRQR KQKR EEELE+E+K Q EEE+RLENPELY+EQ+ A+Y
Sbjct: 403 QEQLNEKKKQLSLKSMAEGRQRLKQKRHEEELERERKQQLEEEKRLENPELYLEQLHARY 462

Query: 361 KELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTF 420
           K+LSE++DQ+KRLKTNG H+NGNN SGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTF
Sbjct: 463 KDLSERLDQQKRLKTNGGHSNGNNLSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTF 522

Query: 421 GAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEI 480
           GA+DEDWQLYKLMS+D +DDDE  DE EAELA IS+RLQ++DPTF+PK E+G +Q  AE+
Sbjct: 523 GARDEDWQLYKLMSKDYNDDDEGPDEEEAELACISSRLQDLDPTFIPKLEAGISQ-PAEL 581

Query: 481 PRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQR 540
           P VRPLTKEDFQI LGVERFRCPE+LF PNW+ +DQVGLDEM GVSIRRLP KDE LEQR
Sbjct: 582 PHVRPLTKEDFQIFLGVERFRCPELLFNPNWIAVDQVGLDEMVGVSIRRLPYKDESLEQR 641

Query: 541 LTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQF 600
           LTSSIL+TGG  LFPG+ ERLEAGIRMIRPCG PIK+VRALDPV+DAWRGA+ +A+  QF
Sbjct: 642 LTSSILVTGGSSLFPGIVERLEAGIRMIRPCGTPIKIVRALDPVMDAWRGAASFASDPQF 701

Query: 601 PQQTFSRMDYYEKGENWLRRYQLQYTL 627
             QTFSR+DYYEKGE+WLR YQLQYTL
Sbjct: 702 HMQTFSRLDYYEKGEDWLRNYQLQYTL 728

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501069|ref|XP_003519351.1| PREDICTED: actin-related protein 5-like isoform 1 [Glycine max]

 Score =  973 bits (2515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/627 (78%), Positives = 556/627 (88%), Gaps = 1/627 (0%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           MEYILDF FDR+GANG+EIDHPVLITECVCNPV SRSKMAELLFETYGVPS+AFGVD AF
Sbjct: 97  MEYILDFGFDRMGANGTEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDVAF 156

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           SYKYNQQ G+C KD LA+CPGF+TTHVIPFV+GEPVY G CRTN+GG+H+TD+LKQLLSL
Sbjct: 157 SYKYNQQQGVCAKDCLALCPGFNTTHVIPFVDGEPVYEGCCRTNVGGFHVTDHLKQLLSL 216

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P H+ + TWEKVEDLKMEHCYIAPDY SE +LFQKG KEAE KTRCWQLPWVPPP EE
Sbjct: 217 KYPYHLARFTWEKVEDLKMEHCYIAPDYVSEVRLFQKGAKEAEEKTRCWQLPWVPPPIEE 276

Query: 181 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
           PPSEEEIARKAAIKE+QGQRLREMAEAKRSS+INELEN++HGLEFL  QLEQVEE+ + +
Sbjct: 277 PPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELHGLEFLFHQLEQVEESKVLS 336

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
           FL++TGY SRQEIES   K+ QSLRKAKGE K EQ E EK D + NEKY LI+IPD+ML+
Sbjct: 337 FLAETGYGSRQEIESARNKVMQSLRKAKGEPKNEQDETEKVDPAANEKYSLINIPDDMLT 396

Query: 301 LEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKY 360
            EQL EK++Q+ LK+  EGRQR KQKR EEELE+E+K Q EEE+RLENPELY+EQ+ A+Y
Sbjct: 397 QEQLNEKKKQLSLKSMAEGRQRLKQKRHEEELERERKQQLEEEKRLENPELYLEQLHARY 456

Query: 361 KELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTF 420
           K+LSE++DQ+KRLKTNG H+NGNN SGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTF
Sbjct: 457 KDLSERLDQQKRLKTNGGHSNGNNLSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTF 516

Query: 421 GAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEI 480
           GA+DEDWQLYKLMS+D +DDDE  DE EAELA IS+RLQ++DPTF+PK E+G +Q  AE+
Sbjct: 517 GARDEDWQLYKLMSKDYNDDDEGPDEEEAELACISSRLQDLDPTFIPKLEAGISQ-PAEL 575

Query: 481 PRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQR 540
           P VRPLTKEDFQI LGVERFRCPE+LF PNW+ +DQVGLDEM GVSIRRLP KDE LEQR
Sbjct: 576 PHVRPLTKEDFQIFLGVERFRCPELLFNPNWIAVDQVGLDEMVGVSIRRLPYKDESLEQR 635

Query: 541 LTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQF 600
           LTSSIL+TGG  LFPG+ ERLEAGIRMIRPCG PIK+VRALDPV+DAWRGA+ +A+  QF
Sbjct: 636 LTSSILVTGGSSLFPGIVERLEAGIRMIRPCGTPIKIVRALDPVMDAWRGAASFASDPQF 695

Query: 601 PQQTFSRMDYYEKGENWLRRYQLQYTL 627
             QTFSR+DYYEKGE+WLR YQLQYTL
Sbjct: 696 HMQTFSRLDYYEKGEDWLRNYQLQYTL 722

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185284|ref|NP_001189870.1| actin-related protein 5 [Arabidopsis thaliana] gi|332641670|gb|AEE75191.1| actin-related protein 5 [Arabidopsis thaliana]

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/627 (73%), Positives = 553/627 (88%), Gaps = 2/627 (0%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           MEYILD+AFDRLGANGS IDHP+LITEC CNPV SRSKMAELLFETYGVP+VAFGVDAAF
Sbjct: 103 MEYILDYAFDRLGANGSGIDHPILITECACNPVQSRSKMAELLFETYGVPAVAFGVDAAF 162

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           SYKYNQ +GIC KDG+ +CPGF+TTH IPFV+GEP+Y+GS RTNIGGYH+TDYLKQLLSL
Sbjct: 163 SYKYNQLHGICKKDGIVLCPGFTTTHSIPFVDGEPIYKGSSRTNIGGYHVTDYLKQLLSL 222

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P H ++ TWEK EDLK+EHCYIAPDY SE +LFQ+G KEAE KT  WQLPW+PPPTE 
Sbjct: 223 KYPFHSSRFTWEKAEDLKLEHCYIAPDYASEIRLFQEGRKEAEEKTSYWQLPWIPPPTEV 282

Query: 181 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
           PPSEEEIARKAAI+E+QGQRLREMAEAKR S+IN++ENQ+  L FLL+Q++QVEE+DI  
Sbjct: 283 PPSEEEIARKAAIREKQGQRLREMAEAKRVSKINDMENQLISLRFLLKQVDQVEEDDIPT 342

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASM-NEKYPLIHIPDNML 299
           FLSDTGY SRQE+EST+ K+TQSLRKA+GE K E AE E+   S+ NEKYPL+++PD++L
Sbjct: 343 FLSDTGYASRQELESTITKVTQSLRKARGEPKNEPAEYEENPDSLNNEKYPLMNVPDDIL 402

Query: 300 SLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAK 359
           + EQLK+K+RQ+FLKTT EGR RA+QKR EEELE+EK+NQ EEERR ENPE Y+E+++A+
Sbjct: 403 TPEQLKDKKRQMFLKTTAEGRLRARQKRNEEELEKEKRNQLEEERRRENPESYLEELQAQ 462

Query: 360 YKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDT 419
           YKE+ E+++Q+KRLKTNG+ +NGNN SGG+GRGERL+AAQRERMRLLTTAAFDRGKGEDT
Sbjct: 463 YKEVLERVEQKKRLKTNGS-SNGNNKSGGIGRGERLSAAQRERMRLLTTAAFDRGKGEDT 521

Query: 420 FGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE 479
           FG++DEDWQLYKLMS+DNDDDDE+ D +EAELAR+S+RLQE+DPTFV K E   +Q++ E
Sbjct: 522 FGSRDEDWQLYKLMSKDNDDDDEQPDSDEAELARLSSRLQEIDPTFVQKVEGELSQTSGE 581

Query: 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQ 539
           +PRVRPLT+ED++IV+G+ERFRCPEILF PN +GIDQVGLDEM G SIRRLP  +++LE+
Sbjct: 582 VPRVRPLTEEDYKIVIGIERFRCPEILFHPNLIGIDQVGLDEMAGTSIRRLPHDEKELEE 641

Query: 540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQ 599
           RLTSSILMTGGC L PGM+ERLE GIRMIRPCG+PI VVRA+DPVLDAWRGAS +A  L 
Sbjct: 642 RLTSSILMTGGCSLLPGMNERLECGIRMIRPCGSPINVVRAMDPVLDAWRGASAFAANLN 701

Query: 600 FPQQTFSRMDYYEKGENWLRRYQLQYT 626
           F    F++MDY EKGE+WLR YQ++Y 
Sbjct: 702 FLGNAFTKMDYDEKGEDWLRNYQIRYN 728

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227204397|dbj|BAH57050.1| AT3G12380 [Arabidopsis thaliana]

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/627 (73%), Positives = 553/627 (88%), Gaps = 2/627 (0%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           MEYILD+AFDRLGANGS IDHP+LITEC CNPV SRSKMAELLFETYGVP+VAFGVDAAF
Sbjct: 103 MEYILDYAFDRLGANGSGIDHPILITECACNPVQSRSKMAELLFETYGVPAVAFGVDAAF 162

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           SYKYNQ +GIC KDG+ +CPGF+TTH IPFV+GEP+Y+GS RTNIGGYH+TDYLKQLLSL
Sbjct: 163 SYKYNQLHGICKKDGIVLCPGFTTTHSIPFVDGEPIYKGSSRTNIGGYHVTDYLKQLLSL 222

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEE 180
           K+P H ++ TWEK EDLK+EHCYIAPDY SE +LFQ+G KEAE KT  WQLPW+PPPTE 
Sbjct: 223 KYPFHSSRFTWEKAEDLKLEHCYIAPDYASEIRLFQEGRKEAEEKTSYWQLPWIPPPTEV 282

Query: 181 PPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
           PPSEEEIARKAAI+E+QGQRLREMAEAKR S+IN++ENQ+  L FLL+Q++QVEE+DI  
Sbjct: 283 PPSEEEIARKAAIREKQGQRLREMAEAKRVSKINDMENQLISLRFLLKQVDQVEEDDIPT 342

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASM-NEKYPLIHIPDNML 299
           FLSDTGY SRQE+EST+ K+TQSLRKA+GE K E AE E+   S+ NEKYPL+++PD++L
Sbjct: 343 FLSDTGYASRQELESTITKVTQSLRKARGEPKNEPAEYEENPDSLNNEKYPLMNVPDDIL 402

Query: 300 SLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAK 359
           + EQLK+K+RQ+FLKTT EGR RA+QKR EEELE+EK+NQ EEERR ENPE Y+E+++A+
Sbjct: 403 TPEQLKDKKRQMFLKTTAEGRLRARQKRNEEELEKEKRNQLEEERRRENPESYLEELQAQ 462

Query: 360 YKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDT 419
           YKE+ E+++Q+KRLKTNG+ +NGNN SGG+GRGERL+AAQRERMRLLTTAAFDRGKGEDT
Sbjct: 463 YKEVLERVEQKKRLKTNGS-SNGNNKSGGIGRGERLSAAQRERMRLLTTAAFDRGKGEDT 521

Query: 420 FGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE 479
           FG++DEDWQLYKLMS+DNDDDDE+ D +EAELAR+S+RLQE+DPTFV K E   +Q++ E
Sbjct: 522 FGSRDEDWQLYKLMSKDNDDDDEQPDSDEAELARLSSRLQEIDPTFVQKVEGELSQTSGE 581

Query: 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQ 539
           +PRVRPLT+ED++IV+G+ERFRCPEILF PN +GIDQVGLDEM G SIRRLP  +++LE+
Sbjct: 582 VPRVRPLTEEDYKIVIGIERFRCPEILFHPNLIGIDQVGLDEMAGTSIRRLPHDEKELEE 641

Query: 540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQ 599
           RLTSSILMTGGC L PGM+ERLE GIRMIRPCG+PI VVRA+DPVLDAWRGAS +A  L 
Sbjct: 642 RLTSSILMTGGCSLLPGMNERLECGIRMIRPCGSPINVVRAMDPVLDAWRGASAFAANLN 701

Query: 600 FPQQTFSRMDYYEKGENWLRRYQLQYT 626
           F    F++MDY EKGE+WLR YQ++Y 
Sbjct: 702 FLGNAFTKMDYDEKGEDWLRNYQIRYN 728

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	627
ASPGD|ASPL0000051593	770	AN2487 [Emericella nidulans (t	0.963	0.784	0.28	1.1e-66
POMBASE|SPBC365.10	721	arp5 "actin-like protein Arp5"	0.964	0.839	0.268	3e-62
FB|FBgn0038576	648	Arp5 "Actin-related protein 5"	0.508	0.492	0.296	1.1e-60
DICTYBASE|DDB_G0291728	684	arpE "actin related protein 5"	0.569	0.521	0.299	4.3e-57
CGD|CAL0000047	776	orf19.504 [Candida albicans (t	0.671	0.542	0.266	8.5e-56
UNIPROTKB|Q293V2	651	Arp5 "Actin-related protein 5"	0.508	0.490	0.287	4.9e-55
SGD|S000005004	755	ARP5 "Nuclear actin-related pr	0.677	0.562	0.248	6.3e-55
UNIPROTKB|F1SDX1	608	ACTR5 "Uncharacterized protein	0.472	0.486	0.299	3e-54
UNIPROTKB|Q9H9F9	607	ACTR5 "Actin-related protein 5	0.460	0.476	0.307	6.1e-54
UNIPROTKB|G3N1W1	611	ACTR5 "Uncharacterized protein	0.462	0.474	0.304	7.4e-54

ASPGD|ASPL0000051593 AN2487 [Emericella nidulans (taxid:162425)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 182/650 (28%), Positives = 292/650 (44%)

Query:     1 MEYILDFAFDRLGANGSE--IDHPVLITECVCNPVHSRSK---------------MAELL 43
             ME +LD+ F +LG +G+   +D P+++TE + NP + R                 M E+L
Sbjct:   134 MEGVLDYLFIKLGVDGANGGVDRPIVMTEPIANPNYPRKSEKTACEVKLVLTSIVMNEIL 193

Query:    44 FETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRT 103
             FE Y  PSVA+G+D+ FSY+YN+       DGL +    ++THVIP +  + +     R 
Sbjct:   194 FECYSAPSVAYGIDSLFSYRYNR-----GTDGLIVDSSHTSTHVIPVLNSKALLSNCSRL 248

Query:   104 NIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAE 163
             N GG H ++YL +L+ LK+P    K+T  ++EDL   HCY++ DY  E   +   T   E
Sbjct:   249 NFGGMHASEYLLKLMRLKYPTFPGKMTEHQMEDLMHNHCYVSKDYDRELSGYLDWTG-LE 307

Query:   164 HKTRCWQLPWVXXXXXXXXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELENQIHGX 223
              +    Q P+                        G+RL+E A   R  ++ + E ++   
Sbjct:   308 DRDHVIQYPFTEHIVPEKTEEELARIAERKKES-GRRLQEQAAKMRLEKLMKKEQELEYY 366

Query:   224 XXXXXXXXXXXXNDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDA 283
                          +    L          +E  +  L +S+++++ +   +    E+ +A
Sbjct:   367 KDLQRGLQSETKKEKTRILDAEDLKDEAHLERLIRDLERSIKRSRNK---DLGNEEQEEA 423

Query:   284 SMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVXXXXXXXXXXXXXXX 343
             S    +PL+ +PD  L    LKEKR Q  +K+  + RQRAK+++                
Sbjct:   424 SEEMSFPLLDVPDEELDEAGLKEKRHQRLMKSNVDARQRAKEEKEREQARKDEELRLDRE 483

Query:   344 XXXXXPELYVEQMRAKYKELSEKIDQRKRLKXXXXXXXXXXXXXXXXXXERLNAAQRERM 403
                  PE +V + RA+ + L ++I +R R+K                    L A   ++ 
Sbjct:   484 KRENDPEGWVAERRAQRQNLLQRIKERDRMKADLGNRKSLASQMRMKTLANLAADGPKKR 543

Query:   404 RLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRXXXXXXXXXXXXXXXLARISARLQEVDP 463
             R        RG  +D FGA DEDW +Y+ ++                L  +   L E DP
Sbjct:   544 R--------RGGDDDDFGANDEDWGVYRTVATGEQSDDDEEEDLSGMLDSVERELLEYDP 595

Query:   464 TFVPKQ----ESGPTQSAAEI------PRVRPLTKEDFQIVLGVERFRCPEILFRPNWVG 513
              F        +S  T+S   +      P      +E  QI L VER R PE++F+P+  G
Sbjct:   596 EFTENHTLAAQSDWTKSLIHVFLRGPWPFDPESQREAHQIHLNVERIRVPEVVFKPSIAG 655

Query:   514 IDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGA 573
             IDQ G+ E+    + +  +  E+ + RL   + +TGG  LF    ER     R   P  A
Sbjct:   656 IDQAGIVEIAADIVNQRFSNPEE-QARLLRDVFLTGGNTLFQNFDERFRNDFRACLPLEA 714

Query:   574 PIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623
              + V RA DP+LDAW+GA+ +A+     + + SR +Y EKG  +L+ + L
Sbjct:   715 QLTVRRASDPILDAWKGAAQWASGSGLAKSSISREEYLEKGSEYLKEHDL 764

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

POMBASE|SPBC365.10 arp5 "actin-like protein Arp5" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 171/637 (26%), Positives = 292/637 (45%)

Query:     1 MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
             ME +LD+ F +LG +   ++HP+ +TE + NP + RS M ELLFE Y  PSVA+G+D  F
Sbjct:    98 MEQVLDYTFLKLGID--RMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLF 155

Query:    61 SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
             S+ +N +    +  G+ +  G + +HVIP + GE +   + R + GG   + YL +L  +
Sbjct:   156 SFYHNTKP---SSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQI 212

Query:   121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSE-AQLFQKGTKEAEHKTRCWQLPWVXXXXX 179
             K+P    K+   + E L  +HC+++ DY  + A    +   E +      Q P+      
Sbjct:   213 KYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHALDRDILERDEIVL--QFPYTEAAAQ 270

Query:   180 XXXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELENQIHGXXXXXXXXXXXXXNDIA 239
                               G+RL+  A  KR  +  E + ++                   
Sbjct:   271 EKSQEELELIAERKRES-GRRLQAQAAIKRKEKAAERDRELATLTELQQQSLVLSRRAFQ 329

Query:   240 AFLSDTGYVSRQEIESTLVKLTQSLRKA-KGERKVEQAE--LEKTDASMNEKYPLIHIPD 296
               L + G+    ++ + +  +   +R+A + +++ E++E  L+ T+  + + +PL+++PD
Sbjct:   330 RALEEAGFEDESQLNAQVKNVQAKIRRAQRDQQRQEESEGSLDVTEIDVEQAFPLLNVPD 389

Query:   297 NMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVXXXXXXXXXXXXXXXXXXXXPELYVEQM 356
               L    L++KR Q  +K   + R RAK ++                        +V + 
Sbjct:   390 AELDEAGLRQKRHQRLMKANYDARVRAKAEKAIEEAAEAERAEADERLRLENFSTWVNEK 449

Query:   357 RAKYKELSEKIDQRKRLKXXXXXXXXXXXXXXXXXXERLNAAQRERMRLLTTAAFDRGKG 416
             R  +K L EKI + KRLK                    L + Q  + R        + + 
Sbjct:   450 RETHKILLEKISKNKRLKFELNDRKSHASQMRMKSLATLASEQPIQKRKR------KDQS 503

Query:   417 EDTFGAKDEDWQLYKLMSRXXXXXXXXXXXXXXXLARISARLQEVDPTFVPKQE----SG 472
             ED FGA+DEDW++Y  +                 +  +  +L E D  F         + 
Sbjct:   504 EDNFGARDEDWKVYHDVL-TAEQLEEERKKLLDQIYSLEKQLLEYDSQFTQANTYDTLND 562

Query:   473 P--TQSAAEIPRVRPLTKED----FQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVS 526
             P  T   A    V      D    FQ+ L VE+ R PE++F P+ VGIDQ G+ E+    
Sbjct:   563 PRATLLYAFTRGVSDFDVNDVAQAFQLHLNVEQIRVPEVIFSPSIVGIDQAGILEIMRSI 622

Query:   527 IRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLD 586
             ++R   +++   Q+L S++L+TGG    PGM  R++  +  I P G+ I V RA +P+LD
Sbjct:   623 LQRHSLEEQ---QKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLD 679

Query:   587 AWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623
             AW+GAS ++   +F     +R +Y EKG  +++ + L
Sbjct:   680 AWKGASEWSVTEKFKAAKVTREEYLEKGPEYIKEHSL 716

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006281 "DNA repair" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IDA

FB|FBgn0038576 Arp5 "Actin-related protein 5" [Drosophila melanogaster (taxid:7227)]

 Score = 393 (143.4 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 98/330 (29%), Positives = 163/330 (49%)

Query:     2 EYILDFAFDRLGANGSE-IDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
             E I D+ F ++G +G + IDHP+++TE + NP   R +M ELLFE YG+PSV++G+DA +
Sbjct:    95 EQIFDYIFTKMGFDGQDKIDHPIILTEALANPNFCRQQMNELLFECYGIPSVSYGIDALY 154

Query:    61 SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
             S+K++QQ      D L I  G+STTHVIP ++G+       R N+GGYHI  YL +L+ +
Sbjct:   155 SWKHHQQKQKNISDALIISFGYSTTHVIPVLDGKLQLEHVRRLNVGGYHIITYLFRLMQM 214

Query:   121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVXXXXXX 180
             K+P H+  +T  ++E L  EHC+IA DY  E   + +     EH  +  QLP+       
Sbjct:   215 KYPVHLNAITISRMEKLVHEHCHIAVDYKEELVQWAQMDYYDEHIMKI-QLPY--NAVTA 271

Query:   181 XXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELENQIHGXXXXXXXXXXXXXNDIAA 240
                                RL ++ + +   ++ E E Q+               +    
Sbjct:   272 TNAMLTAEQKQEKRRELAHRLLDIKKNREQEKLREDEQQLFVYNKLRQLYEQKKLDKFER 331

Query:   241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
              L      + ++++S +  +   +++A+ ER        K    +N K P    P+ M  
Sbjct:   332 ALQQQQIGTLEDLDSLIATINSRIKRAQ-ERAQSGPRPSKQQERLN-KMP--KPPEGMSQ 387

Query:   301 ---LEQLKEKRRQIFLKTTTEGRQRAKQKR 327
                L +L+ KR +I  +     +QR++Q +
Sbjct:   388 ADWLAELQGKREKILGRKQARQQQRSEQAK 417

GO:0031011 "Ino80 complex" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0043140 "ATP-dependent 3'-5' DNA helicase activity" evidence=ISS

DICTYBASE|DDB_G0291728 arpE "actin related protein 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 397 (144.8 bits), Expect = 4.3e-57, Sum P(2) = 4.3e-57
 Identities = 114/381 (29%), Positives = 184/381 (48%)

Query:     2 EYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFS 61
             E I D+ F + G   +EI++PVLITE   NP   R  M+ELLFE Y + SV +G+D+ FS
Sbjct:   101 ESIFDYIFHKFGIE-NEIENPVLITEPTSNPTFCRKYMSELLFECYNIKSVVYGIDSLFS 159

Query:    62 YKYNQ--QYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS 119
             + Y Q  Q+    K+ L I   F+TTH+         ++ + R NIGG   TDYL++L+ 
Sbjct:   160 F-YGQRDQFKDGGKNSLIIGSSFNTTHIYNVQNYNVSHQQTKRINIGGGASTDYLRKLIH 218

Query:   120 LKHPQHMTKLTWEKVEDLKMEHCYIAP-DYFSEAQLFQKGTKEAEHKTRCWQLPWVXXXX 178
             LK+P+H +  T      +K EHCY++   Y  E + F+   + A+ K+   QLP+     
Sbjct:   219 LKYPKHKSYFTQNYTNKIKEEHCYVSQGQYIEELKEFEND-QLAKEKSVIIQLPYQEIDF 277

Query:   179 XXXXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELENQIHGXXXXXXXXXXXXXNDI 238
                                G +LRE+A+ KR  +  ELE+++                + 
Sbjct:   278 EKLEEERQRKIQNRKDL--GAKLRELADKKRLEKKTELEDKL-ASLESILALKTTNVEEF 334

Query:   239 AAFLSDTGYVSRQEIESTLVKLTQSLR-KAKGERKVEQAELEKTDASMNEKYPLIHIPDN 297
                L    Y +    E  L++    L+ K  G++K E  ++E T     E++PL+ I D+
Sbjct:   335 QQTLKSKSYAT----EKDLIRDIDDLKDKLFGKKK-ESEQVEDT-----EEFPLLFIADS 384

Query:   298 MLSLEQLKEKRRQIFLKTTTEGRQRAKQKR----VXXXXXXXXXXXXXXXXXXXXPELYV 353
              L+ +QLKEK++Q  LK+  +GR   K+KR                         PE Y+
Sbjct:   385 ELNADQLKEKKKQRQLKSMKDGRLAQKRKRDEEKEKEKEKEEERDRQEEESFLKDPEHYL 444

Query:   354 EQMRAKYKELSEKIDQRKRLK 374
             + + ++  ++ EK + R++ K
Sbjct:   445 KDLHSRKSKILEKREARQKQK 465

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

CGD|CAL0000047 orf19.504 [Candida albicans (taxid:5476)]

 Score = 412 (150.1 bits), Expect = 8.5e-56, Sum P(2) = 8.5e-56
 Identities = 118/443 (26%), Positives = 195/443 (44%)

Query:     1 MEYILDFAFDRLGA--NGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDA 58
             +EYILD++F+ LGA  +  ++++P+++TE +    + R  M ELLFE Y VP V+FG+D+
Sbjct:   115 IEYILDYSFEHLGATSDNGKLNNPIVMTEPITCTHNQRKSMYELLFEAYQVPKVSFGIDS 174

Query:    59 AFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL 118
              FS+ Y    G     GL I  G  +T ++P + G  +   + R + GG     YL +LL
Sbjct:   175 LFSF-YANSSG--KSSGLVIGAGNQSTSIMPVINGRGILSQAKRIDWGGEQSQQYLSKLL 231

Query:   119 SLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPW-VXXX 177
             +LK+P   +KL      +L  ++CYI+ DY  E +         E K    Q P  +   
Sbjct:   232 ALKYPYFPSKLNNYHTTNLFKDYCYISEDYQQEIKHILD-MDVLETKDVVVQAPVEINVS 290

Query:   178 XXXXXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELENQIHGXXXXXXXXXXXXXND 237
                                QG+RL++ A+ KR  ++ + + +                 +
Sbjct:   291 TEKKKTDEELAEQAAKRKEQGKRLQKQAQEKRLEKLAQKQEEWEYFSKFKEDNSSLSPEE 350

Query:   238 IAAFLSDTGYVSRQEIESTLVKLTQSLRKAK--GERKVEQAELEKTDASMNEKYPLIHIP 295
                 L + G+   ++ +  +  L +SL++A   GE   E+ E++ + A     +PL+ IP
Sbjct:   351 FETKLIENGFDDLEDFKKYMGSLERSLKRANQGGEDDHEEEEIDPSSA-----WPLVDIP 405

Query:   296 DNMLSLEQLKEKRRQIFLKTTTEGRQRAKQ-------KRVXXXXXXXXXXXXXXXXXXXX 348
             D+ L+ EQ+KEKR+Q   K   E R+R K+        R+                    
Sbjct:   406 DDQLTAEQIKEKRKQKLHKANFEARERNKEIKRQEEEARLQFEKEQQEWRDRDLDDWCTT 465

Query:   349 PELYVEQMRAKYKELSEKIDQRKRLKXXXXXXXXXXXXXXXXXXERLNAAQRERMRLLTT 408
               L + +  +KYKE  + ++  K  K                      + Q  + R    
Sbjct:   466 KRLKLAEAISKYKEKQKLLESFKDRKSAAAQQRMKYIADLANDENGSTSTQSRKRRRNAN 525

Query:   409 AAFDRGKGEDTFGAKDEDWQLYK 431
             A  D     DTFGA DEDW +Y+
Sbjct:   526 ATIDNDPN-DTFGANDEDWNMYR 547

GO:0005829 "cytosol" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0043140 "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA

GO:0042766 "nucleosome mobilization" evidence=IEA

UNIPROTKB|Q293V2 Arp5 "Actin-related protein 5" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 362 (132.5 bits), Expect = 4.9e-55, Sum P(2) = 4.9e-55
 Identities = 95/331 (28%), Positives = 159/331 (48%)

Query:     2 EYILDFAFDRLGANGSE-IDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
             E I D+ F ++G  G + I +P+++TE + NP   R  M+ELLFE YG+P+V++G+DA +
Sbjct:    98 EQIFDYIFTKMGFEGEQSIANPIVLTEALANPNFCRQNMSELLFECYGIPAVSYGIDALY 157

Query:    61 SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
             S+++ Q       D L I  G+STTHVIP + G+   +   R N+GGYHI  YL  L+ +
Sbjct:   158 SWEHYQNRRKKVSDALIISLGYSTTHVIPVLNGKLQLQHVRRLNVGGYHIITYLLCLMQM 217

Query:   121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVXXXXXX 180
             K+P H+  ++  ++E L  EHC+IA DY  E   + +     EH  +  QLP+       
Sbjct:   218 KYPVHLNAISISRMEKLVHEHCHIAVDYREELLKWGQMDYYEEHIMKI-QLPY--NPVTA 274

Query:   181 XXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELENQIHGXXXXXXXXXXXXXNDIAA 240
                                RL E+   +   ++ E E Q+                    
Sbjct:   275 TNALLTAEQKLEKRRELAMRLLEIKNRREGEKLLEDEQQLFVYNKLRQLYEQDKLQKFEL 334

Query:   241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
              L+     +  E++S +  ++  +++ K ER +   +  K    + +K P    P+ +  
Sbjct:   335 ALAQQQIGNLDELDSLISTISNRIKRIK-ERPLSSPKPSKQQEKI-DKMP--KAPEGVSQ 390

Query:   301 ---LEQLKEKRRQIFLKTTTEGRQRAKQ-KR 327
                L +L+ KR Q+  +  T  +QR +Q KR
Sbjct:   391 ADWLAELQSKREQLLQRKQTRQQQRQEQGKR 421

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

SGD|S000005004 ARP5 "Nuclear actin-related protein involved in chromatin remodeling" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 358 (131.1 bits), Expect = 6.3e-55, Sum P(2) = 6.3e-55
 Identities = 112/450 (24%), Positives = 197/450 (43%)

Query:   198 GQRLREMAEAKRSSRINELENQIHGXXXXXXXXXXXXXNDIAAFLSDTGYVSRQEIESTL 257
             G+RL+E A  KR  ++ + + +                  + + L + G+   ++ +  L
Sbjct:   305 GKRLQEQARLKRMEKLVQKQEEFEYFSKVRDQLIDEPKKKVLSVLQNAGFDDERDFKKYL 364

Query:   258 VKLTQSLRKAKGERKVEQAELEKTDASMN-EKYPLIHIPDNMLSLEQLKEKRRQIFLKTT 316
               L QSL+KA+     + + L++ +     +K+ L+ I D  L+ +Q+KEKR+Q FLK +
Sbjct:   365 HSLEQSLKKAQMVEAEDDSHLDEMNEDKTAQKFDLLDIADEDLNEDQIKEKRKQRFLKAS 424

Query:   317 TEGRQRAKQKRVXXXXXXXXXXXXXXXXXXXXPELYVEQMRAKYKEL----SEKIDQRKR 372
              + RQ+AK+++                        +++  R K  +L     EK+  R  
Sbjct:   425 QDARQKAKEEKERVAKEEEEKKLKEQQWRETDLNGWIKDKRLKLNKLIKRRKEKLKLRDE 484

Query:   373 LKXXXXXXXXXXXXXXXXXXERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKL 432
             +K                  E  N  Q  + R    A  D     DTFGA DEDW +Y  
Sbjct:   485 MKDRKSQVSQNRMKNLASLAED-NVKQGAK-RNRHQATIDNDPN-DTFGANDEDWLIYTD 541

Query:   433 MSRXXXXXXXXXXXXXXXLARISARLQEVDPTFVPKQESGPTQ-----SAAEI----PRV 483
             +++               +  +   L E DP F  ++++   Q     S   +    PR 
Sbjct:   542 ITQNPEAFEEALEYEYKDIVELERLLLEHDPNFT-EEDTLEAQYDWRNSILHLFLRGPRP 600

Query:   484 RPLTK--EDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTG-VSIRRLPTKDEDLEQR 540
                    E  Q+ L VER R PE++F+P   G DQ G+ E++  + +++  ++   L Q 
Sbjct:   601 HDSENIHEQHQMHLNVERIRVPEVIFQPTMGGQDQAGICELSETILLKKFGSQPGKLSQT 660

Query:   541 ---LTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA-T 596
                + +++L+TGG    PG+ ER+        P G  I V  + DP LDAW+G +  A  
Sbjct:   661 SIDMVNNVLITGGNAKVPGLKERIVKEFTGFLPTGTNITVNMSSDPSLDAWKGMAALARN 720

Query:   597 KLQFPQQTFSRMDYYEKGENWLRRYQLQYT 626
             + Q+ +   S+ +Y E G  +++ ++L  T
Sbjct:   721 EEQYRKTVISKKEYEEYGPEYIKEHKLGNT 750

GO:0042766 "nucleosome mobilization" evidence=IDA

GO:0031011 "Ino80 complex" evidence=IMP;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043140 "ATP-dependent 3'-5' DNA helicase activity" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IMP;IPI

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1SDX1 ACTR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 387 (141.3 bits), Expect = 3.0e-54, Sum P(2) = 3.0e-54
 Identities = 93/311 (29%), Positives = 159/311 (51%)

Query:     2 EYILDFAFDRLGANGSE-IDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
             E +LD++F  LG +    +DHP+++TE VCNP++SR  M+ELLFE YG+P VA+G+D+ F
Sbjct:   118 ELLLDYSFQHLGVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYGIPKVAYGIDSLF 177

Query:    61 SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
             S+ +N    + +  GL I  G+  TH++P +EG    +   R N+GG     YL++LL L
Sbjct:   178 SFYHNTPKNLISS-GLIISSGYQCTHILPILEGRLDAKNCKRINLGGSQAAGYLQRLLQL 236

Query:   121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVXXXXXX 180
             K+P H+  +T  ++E++  EH YIA DY  E Q + +     E+     QLP+       
Sbjct:   237 KYPGHLAAITLSRMEEILHEHSYIAEDYVEELQKW-RCPDYYENNVHKMQLPF---SSKL 292

Query:   181 XXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELENQIHGXXXXXXXXXXXXXNDIAA 240
                             Q +RL+E+   +R  ++   + ++               +    
Sbjct:   293 LGSTLTSEEKQERRQQQLRRLQELNARRREEKLQLDQERLDRLLYVQELLEDGQMDQFHK 352

Query:   241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
              L +    S +E++S + KL+ ++ +AK  +K+ QAE+   +  + +  P    PD    
Sbjct:   353 ALIELNMDSPEELQSYIQKLSAAVEQAK--QKMLQAEVS-LEVDVVDSKP--ETPD---- 403

Query:   301 LEQLKEKRRQI 311
             LEQL+    ++
Sbjct:   404 LEQLEPSLEEV 414

GO:0070914 "UV-damage excision repair" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9H9F9 ACTR5 "Actin-related protein 5" [Homo sapiens (taxid:9606)]

 Score = 383 (139.9 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 94/306 (30%), Positives = 159/306 (51%)

Query:     2 EYILDFAFDRLGANGSE-IDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
             E +LD++F  LG +    +DHP+++TE VCNP++SR  M+ELLFE YG+P VA+G+D+ F
Sbjct:   110 ELLLDYSFQHLGVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYGIPKVAYGIDSLF 169

Query:    61 SYKYNQ-QYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS 119
             S+ +N+ +  +C+  GL I  G+  THV+P +EG    +   R N+GG     YL++LL 
Sbjct:   170 SFYHNKPKNSMCS--GLIISSGYQCTHVLPILEGRLDAKNCKRINLGGSQAAGYLQRLLQ 227

Query:   120 LKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVXXXXX 179
             LK+P H+  +T  ++E++  EH YIA DY  E   + +     E+     QLP+      
Sbjct:   228 LKYPGHLAAITLSRMEEILHEHSYIAEDYVEELHKW-RCPDYYENNVHKMQLPF---SSK 283

Query:   180 XXXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELENQIHGXXXXXXXXXXXXXNDIA 239
                              Q +RL+E+   +R  ++   + ++               +   
Sbjct:   284 LLGSTLTSEEKQERRQQQLRRLQELNARRREEKLQLDQERLDRLLYVQELLEDGQMDQFH 343

Query:   240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNML 299
               L +    S +E++S + KL+ ++ +AK  +K+ QAE+   +  + +  P    PD   
Sbjct:   344 KALIELNMDSPEELQSYIQKLSIAVEQAK--QKILQAEVN-LEVDVVDSKP--ETPD--- 395

Query:   300 SLEQLK 305
              LEQL+
Sbjct:   396 -LEQLE 400

GO:0005524 "ATP binding" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0070914 "UV-damage excision repair" evidence=IMP

GO:0006302 "double-strand break repair" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|G3N1W1 ACTR5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 384 (140.2 bits), Expect = 7.4e-54, Sum P(2) = 7.4e-54
 Identities = 93/305 (30%), Positives = 156/305 (51%)

Query:     2 EYILDFAFDRLGANGSE-IDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
             E +LD++F  LG +    +DHP+++TE VC P++SR  M+ELLFE YG+P VA+G+D+ F
Sbjct:   114 ELLLDYSFQHLGVSSQGCVDHPIVLTEAVCTPLYSRQMMSELLFECYGIPKVAYGIDSLF 173

Query:    61 SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
             S+ +N    + +  GL I  G+  TH++P +EG    R   R N+GG     YL++LL L
Sbjct:   174 SFYHNNPKNMISS-GLIISSGYQCTHILPILEGRLDARNCKRINLGGSQAAGYLQRLLQL 232

Query:   121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVXXXXXX 180
             K+P H+  +T  ++E++  EH YIA DY  E Q + +     E+     QLP+       
Sbjct:   233 KYPGHLAAITLSRMEEILHEHSYIAEDYVEELQKW-RCPDYYENNVHKMQLPF---SSKL 288

Query:   181 XXXXXXXXXXXXXXXXQGQRLREMAEAKRSSRINELENQIHGXXXXXXXXXXXXXNDIAA 240
                             Q +RL+E+   +R  ++   + ++               +    
Sbjct:   289 LGSTLTSEEKQERRQQQLRRLQELNARRREEKLQLDQERLDRLLYVQELLEDGQMDQFHK 348

Query:   241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
              L +    S +E++S + KL+ ++ +AK  +K+ QAE+   +  + +  P    PD    
Sbjct:   349 ALIELNMDSPEELQSYIQKLSAAVEQAK--QKILQAEVS-LEVDVVDSKP--ETPD---- 399

Query:   301 LEQLK 305
             LEQL+
Sbjct:   400 LEQLE 404

GO:0070914 "UV-damage excision repair" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940Z2	ARP5_ARATH	No assigned EC number	0.7368	0.9968	0.8632	yes	no
A2WKK5	ARP5_ORYSI	No assigned EC number	0.5862	0.9043	0.9860	N/A	no
Q54E71	ARP5_DICDI	No assigned EC number	0.3058	0.9011	0.8260	yes	no
A2ZP58	ARP5_ORYSJ	No assigned EC number	0.5862	0.9043	0.9860	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018458001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (725 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00024530001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (454 aa)				•	•				0.450
	GSVIVG00020181001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (602 aa)							•		0.436

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	627
pfam00022	367	pfam00022, Actin, Actin	9e-28
smart00268	373	smart00268, ACTIN, Actin	1e-25
pfam00022	367	pfam00022, Actin, Actin	2e-23
smart00268	373	smart00268, ACTIN, Actin	4e-23
PTZ00004	378	PTZ00004, PTZ00004, actin-2; Provisional	5e-20
COG5277	444	COG5277, COG5277, Actin and related proteins [Cyto	2e-19
PTZ00281	376	PTZ00281, PTZ00281, actin; Provisional	6e-19
COG5277	444	COG5277, COG5277, Actin and related proteins [Cyto	1e-18
PTZ00004	378	PTZ00004, PTZ00004, actin-2; Provisional	2e-16
PTZ00466	380	PTZ00466, PTZ00466, actin-like protein; Provisiona	5e-16
PTZ00281	376	PTZ00281, PTZ00281, actin; Provisional	1e-15
PTZ00452	375	PTZ00452, PTZ00452, actin; Provisional	2e-14
PTZ00466	380	PTZ00466, PTZ00466, actin-like protein; Provisiona	3e-14
PTZ00280	414	PTZ00280, PTZ00280, Actin-related protein 3; Provi	1e-11
PTZ00452	375	PTZ00452, PTZ00452, actin; Provisional	2e-10
PTZ00280	414	PTZ00280, PTZ00280, Actin-related protein 3; Provi	3e-08
cd00012	185	cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	5e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	7e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	9e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.001
COG1293	564	COG1293, COG1293, Predicted RNA-binding protein ho	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003

>gnl|CDD|200935 pfam00022, Actin, Actin

 Score =  114 bits (288), Expect = 9e-28
 Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 8/155 (5%)

Query: 1   MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAA 59
           ME I +  F + L  +    +HP+L+TE   NP  +R K  E++FET+GVP++     A 
Sbjct: 75  MEKIWEHTFFEELRVD--PEEHPLLLTEPPLNPPANREKATEIMFETFGVPALYLAKQAV 132

Query: 60  FSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS 119
            S  Y    G     GL +  G   T V+P  EG  + +   R+++ G  +TDYL++LLS
Sbjct: 133 LSA-YA--SGRTT--GLVVDSGAGVTSVVPVYEGYVLQKAIRRSDLAGDDLTDYLRKLLS 187

Query: 120 LKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQL 154
            +     T    E V D+K   CY++ D F +   
Sbjct: 188 SRTYSFNTYAEEEVVRDIKESLCYVSDDPFGDTAA 222

Length = 367

>gnl|CDD|214592 smart00268, ACTIN, Actin

 Score =  108 bits (272), Expect = 1e-25
 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 9/173 (5%)

Query: 1   MEYILDFAFDR-LGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAA 59
           ME I D+ F   L       +HPVL+TE   NP  +R K+ E++FET+  P++   + A 
Sbjct: 77  MEKIWDYTFFNELRV--EPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAV 134

Query: 60  FSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS 119
            S      Y      GL I  G   THV+P V+G  +     R +I G  ITDYLK+LLS
Sbjct: 135 LSL-----YASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDITDYLKELLS 189

Query: 120 LKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLP 172
            +  Q  +   +E V ++K + CY+A D+  E +L ++ ++ ++   + ++LP
Sbjct: 190 ERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKLARESSESSKL-EKTYELP 241

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373

>gnl|CDD|200935 pfam00022, Actin, Actin

 Score =  101 bits (255), Expect = 2e-23
 Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 465 FVPKQESGPTQSAAEIPRVRPLTKEDFQ-IVLGVERFRCPEILFRPNWVGIDQVGLDEMT 523
           +V     G T +++  P        D   I+LG ERFR PEILF P+ +G +  G+ E+ 
Sbjct: 211 YVSDDPFGDTAASSSPP-TVSYELPDGYVIILGNERFRVPEILFNPSLIGSESAGIPELI 269

Query: 524 GVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRA-LD 582
             SI        DL   L ++I++TGG  LFPG +ERLE  +  + P G  +K++    +
Sbjct: 270 YDSINACDV---DLRPSLLANIVVTGGTTLFPGFTERLEKELAQLAPSGVKVKIIAPPNE 326

Query: 583 PVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRY 621
               AW G S+ A+   F Q   S+ +Y E G + + R 
Sbjct: 327 RKYSAWIGGSILASLGTFQQMWVSKQEYEEHGSSVVERK 365

Length = 367

>gnl|CDD|214592 smart00268, ACTIN, Actin

 Score =  101 bits (253), Expect = 4e-23
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 487 TKEDFQIV-LGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSI 545
              D   + +G ERFR PEILF P  +G++Q G+ E+   SI++    D D+ + L  +I
Sbjct: 239 ELPDGNTIKVGNERFRIPEILFSPELIGLEQKGIHELVYESIQK---CDIDVRKDLYENI 295

Query: 546 LMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTF 605
           +++GG  L PG  ERLE  ++ + P    +KV+   +     W G S+ A+   F     
Sbjct: 296 VLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWI 355

Query: 606 SRMDYYEKGENWLRR 620
           ++ +Y E G   + R
Sbjct: 356 TKKEYEESGSQIVER 370

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373

>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional

 Score = 92.1 bits (229), Expect = 5e-20
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 14/167 (8%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           ME I    F       +  +HPVL+TE   NP  +R KM +++FET+ VP++   + A  
Sbjct: 83  MEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVL 141

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS- 119
           S  Y    G     G+ +  G   +H +P  EG  +     R ++ G  +T+Y+ ++L  
Sbjct: 142 SL-YAS--GRTT--GIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHE 196

Query: 120 ---LKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAE 163
                          E V D+K + CYIA D+  E       + + E
Sbjct: 197 RGTTFTTTAEK----EIVRDIKEKLCYIALDFDEEMGNSAGSSDKYE 239

Length = 378

>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton]

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 70/238 (29%), Positives = 103/238 (43%), Gaps = 26/238 (10%)

Query: 1   MEYILDFAFDRLGA-NGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAA 59
           ME I D+ F   G    S  +HP+L+TE   NP  +R K+ ELLFET  VP++   + A 
Sbjct: 86  MEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAV 145

Query: 60  FSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS 119
            S       G  ++ GL I  G S THVIP V+G  + +   R +IGG  ITDYLK+LL 
Sbjct: 146 LS---LYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLR 202

Query: 120 LKHP--------QHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQL 171
            K+P          + + + E V ++K E C    +   E+       +E   +      
Sbjct: 203 EKYPPSRGYNLKSELVEYSSEIVNEIKEEVC----ETDDESAYVSLDAEEEFEEEEEKPA 258

Query: 172 PWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEA---------KRSSRINELENQI 220
                 T +   E  IA+++      G+ +    E          K    I+ LE   
Sbjct: 259 EKSTESTFQLSKETSIAKESKELPD-GEEIEFGNEERFKAPEILFKPELPISGLEEAG 315

Length = 444

>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional

 Score = 88.6 bits (219), Expect = 6e-19
 Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 9/175 (5%)

Query: 448 EAELAR-ISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIV-LGVERFRCPEI 505
           E E+ R I  +L  V   F  + ++  + SA E     P    D Q++ +G ERFRCPE 
Sbjct: 206 EREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELP----DGQVITIGNERFRCPEA 261

Query: 506 LFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGI 565
           LF+P+++G++  G+ E T  SI +    D D+ + L  +++++GG  +FPG+++R+   +
Sbjct: 262 LFQPSFLGMESAGIHETTYNSIMKC---DVDIRKDLYGNVVLSGGTTMFPGIADRMNKEL 318

Query: 566 RMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
             + P    IK++   +     W G S+ A+   F Q   S+ +Y E G + + R
Sbjct: 319 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHR 373

Length = 376

>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton]

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 34/231 (14%)

Query: 423 KDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPR 482
            +   ++   +  +  + D+E     +  A      +E  P     + +        I +
Sbjct: 218 VEYSSEIVNEIKEEVCETDDES-AYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAK 276

Query: 483 VRPLTKEDFQIVLGVE-RFRCPEILFRP-----------------------------NWV 512
                 +  +I  G E RF+ PEILF+P                               +
Sbjct: 277 ESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNL 336

Query: 513 GIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCG 572
           G D  GL E+   SI+     DED+ + L S+I++TGG    PG +ERL+  +  + P  
Sbjct: 337 GNDIAGLPELVYQSIQI---CDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSI 393

Query: 573 APIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623
             + V+   DP LDAW GAS+ A+   F Q   ++ +Y E G + L+  + 
Sbjct: 394 WKVSVIPPPDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444

Length = 444

>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 470 ESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQ-VGLDEMTGVSIR 528
           E G +  +++         +   I +G ERFRCPE LF+P+ +G ++  G+ E+T  SI 
Sbjct: 227 EMGNSAGSSDKYEESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSIN 286

Query: 529 RLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAW 588
           +    D D+ + L  +I+++GG  ++ G+ ERL   +  + P    IKVV   +     W
Sbjct: 287 KC---DIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVW 343

Query: 589 RGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
            G S+ ++   F Q   ++ +Y E G + + R
Sbjct: 344 IGGSILSSLPTFQQMWVTKEEYDESGPSIVHR 375

Length = 378

>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional

 Score = 80.0 bits (197), Expect = 5e-16
 Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 7/158 (4%)

Query: 464 TFVPKQESGPTQSA-AEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEM 522
           +F   +E   ++ A   +P + P   +  QI++G ER+R PE+LF P+ +G++ +GL E+
Sbjct: 226 SFNMNKEKNSSEKALTTLPYILP---DGSQILIGSERYRAPEVLFNPSILGLEYLGLSEL 282

Query: 523 TGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALD 582
              SI R    D DL + L S I+++GG  +F G  +RL   IR   P    I++    +
Sbjct: 283 IVTSITRA---DMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPE 339

Query: 583 PVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
                + G S+ A+   F +   S+ ++ E G   L R
Sbjct: 340 RKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHR 377

Length = 380

>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional

 Score = 78.6 bits (193), Expect = 1e-15
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 9/153 (5%)

Query: 20  DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79
           +HPVL+TE   NP  +R KM +++FET+  P++   + A  S      Y      G+ + 
Sbjct: 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL-----YASGRTTGIVMD 155

Query: 80  PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKM 139
            G   +H +P  EG  +     R ++ G  +TDY+ ++L+ +     T    E V D+K 
Sbjct: 156 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKE 215

Query: 140 EHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLP 172
           +  Y+A D+  EA++    +  A  K+  ++LP
Sbjct: 216 KLAYVALDF--EAEMQTAASSSALEKS--YELP 244

Length = 376

>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional

 Score = 75.2 bits (184), Expect = 2e-14
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 10/152 (6%)

Query: 469 QESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIR 528
           +ES    S  ++P    LT       +  ++FRC EILF+P  +G++  G+  +   SI+
Sbjct: 231 KESNSQDSPYKLPDGNILT-------IKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIK 283

Query: 529 RLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAW 588
           +    D DL Q L  +I+++GG  LFPG++ RL   +  + P    I+V    D    AW
Sbjct: 284 KC---DLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAW 340

Query: 589 RGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
            G S+  T      Q   R +Y E+G + + R
Sbjct: 341 IGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHR 372

Length = 375

>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional

 Score = 74.2 bits (182), Expect = 3e-14
 Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 7/145 (4%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           ME I    ++ +  N  E  HPVL+TE   NP  ++ K+AE+ FET+ VP++   + A  
Sbjct: 89  MENIWIHVYNSMKINSEE--HPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAIL 146

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           S      Y     +G  +  G    H +   EG  +     RT++ G  IT YL  LL  
Sbjct: 147 SL-----YSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRK 201

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIA 145
                 T    E V+++K   CY++
Sbjct: 202 NGHLFNTSAEMEVVKNMKENCCYVS 226

Length = 380

>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 20  DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNK-----D 74
           +H  ++TE   NP  +R   AE++FET+ V  +   V A  + + +       +      
Sbjct: 102 EHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLT 161

Query: 75  GLAICPGFSTTHVIPFVEGEPVYRGSCRTNI--GGYHITDYLKQLLSLKHPQHMTKLTWE 132
           G  I  G   THVIP V+G  +  GS   +I   G  IT++++Q+L  +      +    
Sbjct: 162 GTVIDSGDGVTHVIPVVDGYVI--GSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILL 219

Query: 133 KVEDLKMEHCYIAPDYFSEAQLFQKGTKE 161
             + +K ++CY+APD   E + +    K 
Sbjct: 220 LAQRIKEKYCYVAPDIAKEFEKYDSDPKN 248

Length = 414

>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 19/158 (12%)

Query: 20  DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79
           D PV +T+   N   +R +M +++FET+  P +    +A  S      Y      GL + 
Sbjct: 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSL-----YTSGKTIGLVVD 154

Query: 80  PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL-----SLKHPQHMTKLTWEKV 134
            G   TH +P  EG  + +   + N+ G   TDYL Q+L     SL  P          V
Sbjct: 155 SGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRI-----IV 209

Query: 135 EDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLP 172
           +++K   CY A D   E +++    KE+  +   ++LP
Sbjct: 210 KNIKERLCYTALDPQDEKRIY----KESNSQDSPYKLP 243

Length = 375

>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 20/170 (11%)

Query: 468 KQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGID-QVGLDEMTGVS 526
           K +S P     +   V  +TK+ + + +G ERF  PE+ F P     +    L E+   +
Sbjct: 241 KYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDA 300

Query: 527 IRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMI--------------RPCG 572
           I+  P    D  + L  +I+++GG  +F G  +RL+  +R                +   
Sbjct: 301 IQSCPI---DCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKP 357

Query: 573 APIKVVRALDPV--LDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
            PI V     P      W G S+ A+  +F +   ++ +Y E G +  R 
Sbjct: 358 IPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRY 407

Length = 414

>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 9/115 (7%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKM---------AELLFETYGVPS 51
           +E  L                 V ITE    P  +R  +           L  E  G   
Sbjct: 43  LEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVP 102

Query: 52  VAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIG 106
           VA   DA  +      +G      L +  G  TT +    +G+     +    I 
Sbjct: 103 VAVVNDAVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGKGGVGAAGELGIA 157

This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 55/285 (19%), Positives = 119/285 (41%), Gaps = 28/285 (9%)

Query: 183 SEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQL--EQVEENDIAA 240
             EE+ R+    ERQ + L+    A     + +L++++  LE  L++L  E  E  +   
Sbjct: 703 LLEELRRQLEELERQLEELKR-ELAALEEELEQLQSRLEELEEELEELEEELEELQERLE 761

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
            L +      + +E  L KL + + + + +R+  Q ELE+ +                  
Sbjct: 762 ELEEE----LESLEEALAKLKEEIEELEEKRQALQEELEELE------------------ 799

Query: 301 LEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKY 360
            E+L+E  R++            +++R+E+E+E+ ++  EE E +L+  E  +E++  + 
Sbjct: 800 -EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKEL 858

Query: 361 KELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTF 420
           +EL E++++ +  K                  E L   + E   L       R + E+  
Sbjct: 859 EELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELE 918

Query: 421 GAKDEDWQLYKLMSRDNDDDDEEMDENEAE--LARISARLQEVDP 463
              +        +  + +++ E+  E E E  + R+   ++ + P
Sbjct: 919 AKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGP 963

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 14/178 (7%)

Query: 199 QRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLV 258
             L E+ E K   ++ +L+ ++  LE  LQ+L+++ E                 +  T  
Sbjct: 540 NLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLE--------------ELRLLRTRK 585

Query: 259 KLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTE 318
           +  + LR+   E K +  ELE+  + + E    + + +    LE+ +E+      K   +
Sbjct: 586 EELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQ 645

Query: 319 GRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTN 376
                  +   EELE++ +  E E RR        EQ+  K +EL +  ++ ++L+  
Sbjct: 646 AELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREE 703

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 52/293 (17%), Positives = 109/293 (37%), Gaps = 33/293 (11%)

Query: 195 ERQGQRLREMAE-AKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEI 253
           ERQ + L   AE A+R   +     ++  L  L+ +LE++ E                E 
Sbjct: 199 ERQLKSLERQAEKAERYKELKAELRELE-LALLVLRLEELREELEELQEELKEAEEELEE 257

Query: 254 ESTLVKLTQS----LRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRR 309
            +  ++  +     LR    E + E  EL+K    +      I   +    + + +    
Sbjct: 258 LTAELQELEEKLEELRLEVSELEEEIEELQKE---LYALANEISRLEQQKQILRERLANL 314

Query: 310 QIFLKTTTEGRQRAKQKR---------VEEELEQEKKNQEEEERRLENPELYVEQMRAKY 360
           +  L+      +  + K          +EE+LE+ K+  E  E  LE  E  +E++ ++ 
Sbjct: 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374

Query: 361 KELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLL---TTAAFDRGKGE 417
           +EL E+++  +                 +         + ER+           +R + E
Sbjct: 375 EELEEQLETLRSK------------VAQLELQIASLNNEIERLEARLERLEDRRERLQQE 422

Query: 418 DTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQE 470
                K  +    K +  + ++ +EE++E + EL R+   L+E+       ++
Sbjct: 423 IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 49/268 (18%)

Query: 184 EEEIARK----AAIKERQGQRLREMAEAKRS------------SRINELENQIHGLEFLL 227
           ++EIA         ++++ +  +++   +                + +L  QI  L   L
Sbjct: 44  QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103

Query: 228 QQLE--QVEENDIAAFLSDTGYVSRQEIESTLVKLTQ-----SLRKAKGERKVEQAELEK 280
             LE  + E+    A        S +      + ++      S+R A     +  A  E+
Sbjct: 104 NALEVQEREQRRRLAEQLAALQRSGRN-PPPALLVSPEDAQRSVRLAIYYGALNPARAER 162

Query: 281 TDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLK----TTTEGRQRAKQKRVEEELEQEK 336
            DA                 L+QL   R +I  +    TT    QRA+Q ++ + LE+ K
Sbjct: 163 IDALKAT-------------LKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERK 209

Query: 337 KNQEEEERRLENPELYVEQMRAKYKELSEKI--------DQRKRLKTNGNHTNGNNTSGG 388
           K   +    L   +  +E++RA    L  +I          R+              +  
Sbjct: 210 KTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEA 269

Query: 389 VGRGERLNAAQRERMRLLTTAAFDRGKG 416
              GE       E+M + +T  F   +G
Sbjct: 270 KRTGETYKPTAPEKMLISSTGGFGALRG 297

Length = 420

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 57/310 (18%), Positives = 111/310 (35%), Gaps = 42/310 (13%)

Query: 185 EEIARKAAIKERQGQRLREMAEAKR-----SSRINELENQIHGLEFLLQQLEQVEE---- 235
           EE A  +  KER+ +  R++   +         + ELE Q+  LE   +Q E+ E     
Sbjct: 162 EEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLE---RQAEKAERYQEL 218

Query: 236 -NDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHI 294
             ++            +E+   L +L + L + + E +  Q ELE+ +  + E       
Sbjct: 219 KAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEEL------ 272

Query: 295 PDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVE 354
                   +L+E R ++          + + + +E E+   ++  EE E  LE  E  +E
Sbjct: 273 ------KSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLE 326

Query: 355 Q--------------MRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQR 400
           +                   +EL + + + +  K                  E L     
Sbjct: 327 ELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386

Query: 401 ERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQE 460
           E    L     +  + +      +   +  + +S   +D  EE+ E EAEL  +   L+E
Sbjct: 387 ELEAELAEIRNELEELKRE---IESLEERLERLSERLEDLKEELKELEAELEELQTELEE 443

Query: 461 VDPTFVPKQE 470
           ++      +E
Sbjct: 444 LNEELEELEE 453

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 39/190 (20%), Positives = 85/190 (44%), Gaps = 16/190 (8%)

Query: 185 EEIARKAAIKERQGQRLREMAEAKR---SSRINELENQIHGLEFLLQQLEQVEENDIAAF 241
            EI ++    E++ ++L+E  E      SS   E+EN    L+ L  ++E++EE D+   
Sbjct: 719 GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE-DLHKL 777

Query: 242 LSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSL 301
                 +  +   S + ++   L K + E    +A L + +  +N         +    +
Sbjct: 778 EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK--EI 835

Query: 302 EQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYK 361
           ++L+E+R  +          + + K +E+E+E     +EE E  LE  E  +  + ++  
Sbjct: 836 QELQEQRIDL----------KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885

Query: 362 ELSEKIDQRK 371
           +L ++ D+ +
Sbjct: 886 DLKKERDELE 895

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 15/191 (7%)

Query: 184 EEEIAR-KAAIKERQGQRLREMAE--AKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240
           E EIA  + +I E++ + L +  E  AK  + I++L  +I  LE  +++ E+   + +  
Sbjct: 300 EAEIASLERSIAEKE-RELEDAEERLAKLEAEIDKLLAEIEELEREIEE-ERKRRDKLTE 357

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL-EKTDASMNEKYPLIHIPDNML 299
                 Y   +E    L    + + K   E + E  +  EK +    E   L    D + 
Sbjct: 358 -----EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412

Query: 300 S-LEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRA 358
             L++L E+   +           AK   +EEE E +    +++E +LE     + +   
Sbjct: 413 EELQRLSEELADLNAAIA---GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469

Query: 359 KYKELSEKIDQ 369
           +  +L E+ D+
Sbjct: 470 ELYDLKEEYDR 480

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 54/281 (19%), Positives = 98/281 (34%), Gaps = 41/281 (14%)

Query: 183 SEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEEN--DIAA 240
            +     KA  + R+     E    +    + EL  QI  L   L +LE   E   +  A
Sbjct: 691 EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750

Query: 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
            LS        EIE    +L +   +   E + E  ELE     + E        +    
Sbjct: 751 QLSKELTELEAEIEELEERLEE-AEEELAEAEAEIEELEAQIEQLKE--------ELKAL 801

Query: 301 LEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKY 360
            E L E R ++ L        R + + +E  +   ++  E+ E ++E     +E + A+ 
Sbjct: 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861

Query: 361 KELSEKIDQ-RKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDT 419
           +EL E I++    L+   N                  A+  E + LL +   +  +    
Sbjct: 862 EELEELIEELESELEALLN----------------ERASLEEALALLRSELEELSEELRE 905

Query: 420 FGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQE 460
                        +     +   E++E   +LA++  RL+ 
Sbjct: 906 -------------LESKRSELRRELEELREKLAQLELRLEG 933

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 43/259 (16%), Positives = 100/259 (38%), Gaps = 41/259 (15%)

Query: 211 SRINELENQIHGLEFLLQQLEQ------VEENDIAAFLSDTGYVSRQEIESTLVKLTQSL 264
            ++  LE ++  L   + +LE+          ++   + D G   +  ++  + +L   +
Sbjct: 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEI 303

Query: 265 RKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAK 324
              +     ++ ELE  +  + +    I        L +++E  R+I         +R +
Sbjct: 304 ASLERSIAEKERELEDAEERLAKLEAEID-----KLLAEIEELEREI-------EEERKR 351

Query: 325 QKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNN 384
           + ++ EE  + K+  E+    LE  +    + R + K+  EK+++ KR            
Sbjct: 352 RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR------------ 399

Query: 385 TSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGA-KDEDWQLYKLMSRDNDDDDEE 443
                     +N  +RE  RL         +  D   A    + ++ +L     +D   E
Sbjct: 400 ---------EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE-KEDKALE 449

Query: 444 MDENEAELARISARLQEVD 462
           + + E +L +++A L + +
Sbjct: 450 IKKQEWKLEQLAADLSKYE 468

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 37/187 (19%), Positives = 83/187 (44%), Gaps = 5/187 (2%)

Query: 184 EEEIARKAAIKERQGQRLR-EMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFL 242
           E+  A K  ++ER+      E   A+      ELE ++  L   L++L +    ++A   
Sbjct: 330 EKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELE 389

Query: 243 SDTGYVSRQ--EIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300
           ++   +  +  E++  +  L + L +     +  + EL++ +A + E      + +    
Sbjct: 390 AELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQT--ELEELNEE 447

Query: 301 LEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKY 360
           LE+L+E+  ++  +     R+ A+ +   + LE+E  + E    RLE  +   + +RA  
Sbjct: 448 LEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVL 507

Query: 361 KELSEKI 367
           + L   +
Sbjct: 508 EALESGL 514

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 7e-04
 Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 15/202 (7%)

Query: 184 EEEIARKAAIKERQGQRLREMAEA--KRSSRINELENQIHGLEFLLQQLEQVEE--NDIA 239
           E EI+      E     L E+ E   +   +I  L+ ++   E LL++LEQ+     +  
Sbjct: 301 EGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAK 360

Query: 240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNML 299
             L +      +E+E     L + L + + E    + ELE+    +      +      L
Sbjct: 361 EELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL 420

Query: 300 -----SLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVE 354
                 L++L+ +  ++  +      +  + +   EEL    K  E E   L+      E
Sbjct: 421 EDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQ------E 474

Query: 355 QMRAKYKELSEKIDQRKRLKTN 376
           +++   KELS    +  RL+  
Sbjct: 475 ELQRLEKELSSLEARLDRLEAE 496

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 54/220 (24%), Positives = 107/220 (48%), Gaps = 32/220 (14%)

Query: 185 EEIARKAAIKERQGQRLREMAE-----AKRSSRINELENQIHGLEFLLQQLEQVEENDIA 239
           EE+ +KA   E+  ++L ++        K   ++ EL+ ++  LE  L +LE+ E  ++ 
Sbjct: 518 EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEE-ELAELL 576

Query: 240 AFLSDTGYVSRQEIESTLVKLTQ------SLRKAKGERKVEQAELEKTDASMNEKYPLIH 293
             L + G+ S +E+E  L +L         L+ A+ E + E+ EL+K +  +++ +  + 
Sbjct: 577 KELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELA 636

Query: 294 IPDNMLS-----LEQLK--------EKRRQIFLKTTTE-GRQRAKQKRVEEELEQEKKNQ 339
             +  L      LE+L+        E+ R+ +L+ + E    RA+ + +E+  E+ KK  
Sbjct: 637 ETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696

Query: 340 EEEERRLENPELY------VEQMRAKYKELSEKIDQRKRL 373
           E+ +  LE  E        +E+   + +EL EK+ + K L
Sbjct: 697 EKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKAL 736

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 9e-04
 Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 32/208 (15%)

Query: 184 EEEIARKAAIKERQGQRLREMAE--AKRSSRINELENQIHGLEFLLQQLEQVEENDIAAF 241
            E  + +    + + + LRE+     +   +I  LE     +E L ++LE +        
Sbjct: 259 LEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRAL----- 313

Query: 242 LSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNML-- 299
                    +E+   L  L + L K + + +  ++ELE+     NE   L+      L  
Sbjct: 314 -----LEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEE 368

Query: 300 -----------SLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLEN 348
                      +LE+LK+    I           A  + ++EELE+ +K  EE ER L  
Sbjct: 369 RLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELEREL-- 426

Query: 349 PELYVEQMRAKYKELSEKIDQRKRLKTN 376
                E++  + K+L E+I+Q +  +  
Sbjct: 427 -----EELEEEIKKLEEQINQLESKELM 449

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 44/197 (22%), Positives = 87/197 (44%), Gaps = 16/197 (8%)

Query: 185 EEIARKAAIKERQGQRL-REMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLS 243
           + + R+    E++ +RL +E+ E +    I ELE ++  LE  L++LE+  E        
Sbjct: 810 DALERELESLEQRRERLEQEIEELEE--EIEELEEKLDELEEELEELEKELEELKEEL-- 865

Query: 244 DTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQ 303
                  +E+E+   +L   L++ + E++  + EL + ++ + E    I      L   +
Sbjct: 866 -------EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELE 918

Query: 304 LKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQM----RAK 359
            K +R ++ L    E  +   +  +E ELE+E +  EEE   L    L   +       +
Sbjct: 919 AKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEER 978

Query: 360 YKELSEKIDQRKRLKTN 376
           Y+EL  + +  +  K  
Sbjct: 979 YEELKSQREDLEEAKEK 995

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.1 bits (98), Expect = 0.001
 Identities = 43/262 (16%), Positives = 105/262 (40%), Gaps = 49/262 (18%)

Query: 151  EAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRS 210
            EA+  ++  K+AE   +  +        EE    +E  +KA   +++    ++ AEAK+ 
Sbjct: 1455 EAKKAEEAKKKAEEAKKADEAK---KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511

Query: 211  SRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGE 270
            +   +   +    +    + ++ EE   A          + +     +K  + L+KA+ +
Sbjct: 1512 ADEAKKAEEAKKAD----EAKKAEEAKKADEAKKAEEKKKAD----ELKKAEELKKAEEK 1563

Query: 271  RKVEQAELEKTDASMN---------------EKYPLIHIPDNMLSLEQLKE--------- 306
            +K E+A+  + D +M                E+   ++  +  +  E+ K+         
Sbjct: 1564 KKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE 1623

Query: 307  ---------KRRQIFLKTTTEGRQRAKQKRVEEEL-----EQEKKNQEEEERRLENPELY 352
                     K+ +   K   E +++A++ +  EE       +E K  EE++++ E  +  
Sbjct: 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683

Query: 353  VEQMRAKYKELSEKIDQRKRLK 374
             E  +   + L ++ ++ K+ +
Sbjct: 1684 EEDEKKAAEALKKEAEEAKKAE 1705

Length = 2084

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 27/177 (15%)

Query: 177 PTEEPPSEEEIARKAAIKERQGQRLREMAE------AKRSSRINELENQIHGLEFLLQQL 230
             E+P   E I  + ++ E +   LR   E       +  + +  L+ Q+  L   L+ +
Sbjct: 118 SAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVI 177

Query: 231 EQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYP 290
              EE +    L + G VSR E    L++L +   +A+GE    +AELE     ++E   
Sbjct: 178 S--EELEARRKLKEKGLVSRLE----LLELERERAEAQGELGRLEAELEVLKRQIDEL-- 229

Query: 291 LIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLE 347
                   L  +Q+++  R+  L+  TE + R        EL +      +  +RL 
Sbjct: 230 -------QLERQQIEQTFREEVLEELTEAQARL------AELRERLNKARDRLQRLI 273

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 25/182 (13%)

Query: 180 EPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA 239
           +  + E   +     ++   +L +  +          E +  G E L   L+ +EE   +
Sbjct: 281 KQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKG-ELLYANLQLIEEGLKS 339

Query: 240 AFLSDTGYVSRQEIE------STLVKLTQSLRKA--KGERKVEQAELEKTDASMNEKYPL 291
             L+D  +   +EI+       T  +  Q   K   K +      + + ++      Y  
Sbjct: 340 VRLAD--FYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAY-- 395

Query: 292 IHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPEL 351
                     E  K    +   K   E     +++ +EE L + KK + +++   E    
Sbjct: 396 ---------YESAKTALEKAEGKKAIEE---IREELIEEGLLKSKKKKRKKKEWFEKFRW 443

Query: 352 YV 353
           +V
Sbjct: 444 FV 445

Length = 564

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 38/193 (19%), Positives = 79/193 (40%), Gaps = 32/193 (16%)

Query: 184  EEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLS 243
            EE       +KE   +   E  E      + ELE +    E L ++L ++E         
Sbjct: 852  EELEKELEELKEELEELEAEKEEL--EDELKELEEEK---EELEEELRELESE------- 899

Query: 244  DTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQ 303
                    E++  + KL + L + + + +  + EL + +  + E+Y      +    +E+
Sbjct: 900  ------LAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIER 953

Query: 304  LKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKEL 363
            L+E+   +               R  EE E+ ++  EE + + E+    +E+ + K  E+
Sbjct: 954  LEEEIEAL----------GPVNLRAIEEYEEVEERYEELKSQRED----LEEAKEKLLEV 999

Query: 364  SEKIDQRKRLKTN 376
             E++D+ KR +  
Sbjct: 1000 IEELDKEKRERFK 1012

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 10/185 (5%)

Query: 190 KAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVS 249
           K  ++E +  R R+    +   R+ EL+ +   L+ L ++L Q+EE  + +         
Sbjct: 572 KELLEELRLLRTRKEELEELRERLKELKKK---LKELEERLSQLEE-LLQSLELSEAENE 627

Query: 250 RQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRR 309
            +E E  L    + L       ++ QA LE+ +  + E    I          Q  E   
Sbjct: 628 LEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIR------RELQRIENEE 681

Query: 310 QIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQ 369
           Q+  K     +   + +++ EELE+  K   E E+ +E  E    ++    KEL +    
Sbjct: 682 QLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKA 741

Query: 370 RKRLK 374
            + L+
Sbjct: 742 LELLE 746

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 18/194 (9%)

Query: 185 EEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHG----LEFLLQQLEQVEEN--DI 238
           + +         +   L E A A    R+  LE +I      LE L +Q+E++ E+   +
Sbjct: 799 KALREALDELRAELTLLNEEA-ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857

Query: 239 AAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNM 298
           AA + +      +E+ES L  L       +    + ++ELE+    + E      +    
Sbjct: 858 AAEIEELEE-LIEELESELEALLNERASLEEALALLRSELEELSEELRE------LESKR 910

Query: 299 LSLEQLKEKRRQIFLKTTTEGRQRAKQKR--VEEEL-EQEKKNQEEEERRLENPELYVEQ 355
             L +  E+ R+  L       +  + +   ++E L E+     EE E      E   E+
Sbjct: 911 SELRRELEELREK-LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969

Query: 356 MRAKYKELSEKIDQ 369
            R + K L  KI +
Sbjct: 970 ARRRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 0.003
 Identities = 36/201 (17%), Positives = 83/201 (41%), Gaps = 21/201 (10%)

Query: 179  EEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDI 238
            +E    EE   K A + ++ + L++  E K++    + E   +      ++ ++ EE  I
Sbjct: 1537 DEAKKAEEK--KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARI 1594

Query: 239  AAFLSDTGYVSRQEIESTLVKLTQSLRKAKGER----KVEQAELEKTDASMNEKYPLIHI 294
               +       + + E          +KA+  +    ++++AE EK      +K      
Sbjct: 1595 EEVMKLYEEEKKMKAEE--------AKKAEEAKIKAEELKKAEEEKKKVEQLKKKE---- 1642

Query: 295  PDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEEL---EQEKKNQEEEERRLENPEL 351
             +     E+LK+   +  +K   E ++  + K+  EE    E+++K   E  ++      
Sbjct: 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702

Query: 352  YVEQMRAKYKELSEKIDQRKR 372
              E+++ K  E  +K ++ K+
Sbjct: 1703 KAEELKKKEAEEKKKAEELKK 1723

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	627
KOG0681	645	consensus Actin-related protein - Arp5p [Cytoskele	100.0
KOG0676	372	consensus Actin and related proteins [Cytoskeleton	100.0
PTZ00452	375	actin; Provisional	100.0
PTZ00466	380	actin-like protein; Provisional	100.0
PTZ00281	376	actin; Provisional	100.0
PTZ00004	378	actin-2; Provisional	100.0
PTZ00280	414	Actin-related protein 3; Provisional	100.0
KOG0677	389	consensus Actin-related protein Arp2/3 complex, su	100.0
PF00022	393	Actin: Actin; InterPro: IPR004000 Actin [, ] is a	100.0
KOG0680	400	consensus Actin-related protein - Arp6p [Cytoskele	100.0
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	100.0
KOG0679	426	consensus Actin-related protein - Arp4p/Act3p [Cyt	100.0
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	100.0
COG5277	444	Actin and related proteins [Cytoskeleton]	100.0
KOG0678	415	consensus Actin-related protein Arp2/3 complex, su	100.0
KOG0797	618	consensus Actin-related protein [Cytoskeleton]	99.96
PRK13930	335	rod shape-determining protein MreB; Provisional	99.89
PRK13929	335	rod-share determining protein MreBH; Provisional	99.86
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	99.86
PRK13927	334	rod shape-determining protein MreB; Provisional	99.85
PRK13928	336	rod shape-determining protein Mbl; Provisional	99.74
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	99.5
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	98.82
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	98.49
COG1077	342	MreB Actin-like ATPase involved in cell morphogene	98.38
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	98.32
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	98.3
CHL00094	621	dnaK heat shock protein 70	98.29
PRK01433	595	hscA chaperone protein HscA; Provisional	98.28
PTZ00400	663	DnaK-type molecular chaperone; Provisional	98.24
PRK09472	420	ftsA cell division protein FtsA; Reviewed	98.23
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	98.21
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	98.21
PRK05183	616	hscA chaperone protein HscA; Provisional	98.19
PRK13410	668	molecular chaperone DnaK; Provisional	98.17
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	98.06
PRK13411	653	molecular chaperone DnaK; Provisional	98.03
PLN03184	673	chloroplast Hsp70; Provisional	98.02
PTZ00009	653	heat shock 70 kDa protein; Provisional	97.95
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	96.33
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	96.13
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	96.08
TIGR03739	320	PRTRC_D PRTRC system protein D. A novel genetic sy	95.86
PRK13917	344	plasmid segregation protein ParM; Provisional	95.28
PRK11678	450	putative chaperone; Provisional	95.26
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	94.99
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	91.0
PF06406	318	StbA: StbA protein; InterPro: IPR009440 This entry	90.3
COG4972	354	PilM Tfp pilus assembly protein, ATPase PilM [Cell	89.3
COG4820	277	EutJ Ethanolamine utilization protein, possible ch	88.5
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	85.54
PRK10719	475	eutA reactivating factor for ethanolamine ammonia	84.4
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	84.28
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	83.79
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	82.47
PRK13317	277	pantothenate kinase; Provisional	82.36

>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]

Probab=100.00  E-value=1.6e-97  Score=793.18  Aligned_cols=540  Identities=43%  Similarity=0.696  Sum_probs=477.1

Q ss_pred             CHHHHHHHHhhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEec
Q 006876            1 MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICP   80 (627)
Q Consensus         1 mE~iwd~if~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDi   80 (627)
                      ||.|+||+|.+||++....+|||+|||+.+||...|..|+|+|||+||||+|.++.++++|+|.+-.. ....+|+||++
T Consensus        97 ~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~-~~~~~~liis~  175 (645)
T KOG0681|consen   97 MEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGK-SSNKSGLIISM  175 (645)
T ss_pred             HHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCc-ccCcceEEEec
Confidence            69999999999999932379999999999999999999999999999999999999999999954311 11338999999


Q ss_pred             CCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCch
Q 006876           81 GFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTK  160 (627)
Q Consensus        81 G~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~~  160 (627)
                      ||++|||+||++|.++...++|+|+||.+++.||.+||+.+||.|...+++..++.+++.|||||.||.+|+.+|.. .+
T Consensus       176 g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~-~d  254 (645)
T KOG0681|consen  176 GHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILE-MD  254 (645)
T ss_pred             CCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhh-hh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             hhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHHH
Q 006876          161 EAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA  240 (627)
Q Consensus       161 ~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~  240 (627)
                      +++.+.+++|+||++++...     |+.+.||+|++  +|||+++.-||.+|+.+.|++-                    
T Consensus       255 ~~d~~~~~~qlP~~evl~~~-----e~~l~Ae~kqe--kRlq~~a~lkrv~k~~~re~~r--------------------  307 (645)
T KOG0681|consen  255 YYDENRNYFQLPYTEVLAEV-----ELALTAEKKQE--KRLQEQAALKRVEKINARENRR--------------------  307 (645)
T ss_pred             hhhccceEEecccccccchh-----hhhccHHHHHH--HHHHHHHHHhhHHHHHHHHhhh--------------------
Confidence            99999999999999975433     59999999998  9999999999999999998732                    


Q ss_pred             hhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhHH
Q 006876          241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGR  320 (627)
Q Consensus       241 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~r  320 (627)
                             +++++|+++ ++++           +.+++  +.|  -+.+|+|++|| ..|+++|||+||+|++||+++++|
T Consensus       308 -------edeqql~~~-~kaq-----------~e~e~--~~D--~~q~~~ll~v~-~eL~~d~lk~k~~qr~lkas~dar  363 (645)
T KOG0681|consen  308 -------EDEQQLESY-NKAQ-----------GEQES--NLD--LEQKFPLLNVP-AELDEDQLKEKKKQRILKASTDAR  363 (645)
T ss_pred             -------hhHHHHHHH-HHhh-----------hchhc--Ccc--Hhhhchhhcch-hhhCHHHHHHHHHHHHHHhhhhhh
Confidence                   355666666 3222           11110  122  24799999999 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHH
Q 006876          321 QRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQR  400 (627)
Q Consensus       321 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~~  400 (627)
                      .++|.+|+.||+.      ++++++.+|+.+|++++|.+++.|++++++++++++++              ++|+|.++|
T Consensus       364 ~rar~eke~Er~~------k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~--------------~~r~s~~Sq  423 (645)
T KOG0681|consen  364 LRARVEKELERLN------KLEEEREENLISWLEELREKLEKLLERISQKKRLKQEL--------------KDRKSHASQ  423 (645)
T ss_pred             ccccccchHHHhh------cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hhhhhhhhH
Confidence            9999999655544      55567779999999999999999999999999999999              999999999


Q ss_pred             HHHHhhhhhhcc---C----CCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCC
Q 006876          401 ERMRLLTTAAFD---R----GKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGP  473 (627)
Q Consensus       401 ~rm~~~~~~~~~---~----~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~  473 (627)
                      .||+.++.++.+   +    +-..|.||++|+||+||.++       ++.-+.++.+|..|++.|.+|||.|+... ...
T Consensus       424 ~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~l-------ee~~~~~~~dl~~l~~~L~e~Dp~F~~~~-~~~  495 (645)
T KOG0681|consen  424 LRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDL-------EEENKSILEDLKSLNHELLEFDPHFTQYV-EGT  495 (645)
T ss_pred             hhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHh-------hhhhhhHHHHHHHHHHHHHhhCccccccc-ccc
Confidence            999999999977   2    12377899999999999555       23334477899999999999999999875 112


Q ss_pred             CCccccCCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCC
Q 006876          474 TQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCL  553 (627)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~  553 (627)
                      .+|++...+.  ++++.+++++|.||++|||++|+|+++|.+++||.+++..++.++   |-+.+..|.+||+||||+|+
T Consensus       496 ~d~~~~~~p~--~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~---p~~eq~~lV~nVllTGG~s~  570 (645)
T KOG0681|consen  496 TDPRNGVLPG--FTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRY---PHDEQEKLVSNVLLTGGCSQ  570 (645)
T ss_pred             cCcccCcchh--HHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhC---chhhhHhhhhheEeeccccc
Confidence            2344442222  258899999999999999999999999999999999999999987   89999999999999999999


Q ss_pred             CcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhccCcC
Q 006876          554 FPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYT  626 (627)
Q Consensus       554 ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~~~~  626 (627)
                      +||+.+||.+||..+.|.+.+|+|+.+.||.++||.||+.+|.-.+|..-||||+||+|+|+.+++.|+++|+
T Consensus       571 ~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~~~n~  643 (645)
T KOG0681|consen  571 LPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHVASNI  643 (645)
T ss_pred             CcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986

>KOG0676 consensus Actin and related proteins [Cytoskeleton]

Probab=100.00  E-value=9.5e-68  Score=560.58  Aligned_cols=291  Identities=34%  Similarity=0.599  Sum_probs=268.3

Q ss_pred             CHHHHHHHH-hhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876            1 MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC   79 (627)
Q Consensus         1 mE~iwd~if-~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD   79 (627)
                      ||.||+|+| +.|++.  |.+|||||||++++|+.+|++|+|+|||.|+||++++..++++  |++|     ++||||||
T Consensus        81 me~iw~~if~~~L~~~--Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g-----~ttG~VvD  151 (372)
T KOG0676|consen   81 MEKIWHHLFYSELLVA--PEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASG-----RTTGLVVD  151 (372)
T ss_pred             HHHHHHHHHHHhhccC--cccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcC-----CeeEEEEE
Confidence            689999999 589999  8899999999999999999999999999999999999887777  9999     99999999


Q ss_pred             cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876           80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT  159 (627)
Q Consensus        80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~  159 (627)
                      +|++.||+|||++|+++++++.++++||+++|+||+..|..+++++......+++++|||++|||+.||.+|+.. ... 
T Consensus       152 ~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~-~~~-  229 (372)
T KOG0676|consen  152 SGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEET-ANT-  229 (372)
T ss_pred             cCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhc-ccc-
Confidence            999999999999999999999999999999999999999998888888889999999999999999999999865 210 


Q ss_pred             hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876          160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA  239 (627)
Q Consensus       160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~  239 (627)
                                          .  +                                                        
T Consensus       230 --------------------~--~--------------------------------------------------------  231 (372)
T KOG0676|consen  230 --------------------S--S--------------------------------------------------------  231 (372)
T ss_pred             --------------------c--c--------------------------------------------------------
Confidence                                0  0                                                        


Q ss_pred             HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876          240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG  319 (627)
Q Consensus       240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~  319 (627)
                                                                  +-+.+|.|   ||                       
T Consensus       232 --------------------------------------------~l~~~y~l---PD-----------------------  241 (372)
T KOG0676|consen  232 --------------------------------------------SLESSYEL---PD-----------------------  241 (372)
T ss_pred             --------------------------------------------cccccccC---CC-----------------------
Confidence                                                        00112332   22                       


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876          320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ  399 (627)
Q Consensus       320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~  399 (627)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (372)
T KOG0676|consen  242 --------------------------------------------------------------------------------  241 (372)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876          400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE  479 (627)
Q Consensus       400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~  479 (627)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (372)
T KOG0676|consen  242 --------------------------------------------------------------------------------  241 (372)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHH
Q 006876          480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSE  559 (627)
Q Consensus       480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~e  559 (627)
                                ++.|.+++|||+|||+||+|+++|.+.+||++++.+||.+   ||+|+|+.||+||||+||+|++|||.+
T Consensus       242 ----------g~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~k---cd~dlrk~L~~nivLsGGtT~~pGl~~  308 (372)
T KOG0676|consen  242 ----------GQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMK---CDIDLRKDLYENIVLSGGTTMFPGLAD  308 (372)
T ss_pred             ----------CCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHh---CChhHhHHHHhheEEeCCcccchhHHH
Confidence                      3569999999999999999999999999999999999995   699999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876          560 RLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL  623 (627)
Q Consensus       560 RL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~  623 (627)
                      ||++||+.+.|...+++|+++|++.+++|+||||+||+++|+++||||+||+|+|+++++++||
T Consensus       309 Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f  372 (372)
T KOG0676|consen  309 RLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF  372 (372)
T ss_pred             HHHHHHhhcCCCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence            9999999999999999999999999999999999999999999999999999999999999997

>PTZ00452 actin; Provisional

Probab=100.00  E-value=6e-67  Score=564.31  Aligned_cols=293  Identities=30%  Similarity=0.513  Sum_probs=268.0

Q ss_pred             CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876            1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC   79 (627)
Q Consensus         1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD   79 (627)
                      ||.||+|+|. .|+++  |.+|||||||++++|+..|++|+|+|||+|+||+++++++++||+|++|     ++||||||
T Consensus        82 ~e~iw~~~f~~~l~v~--p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g-----~~tglVVD  154 (375)
T PTZ00452         82 IEIIWHHAFYNELCMS--PEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG-----KTIGLVVD  154 (375)
T ss_pred             HHHHHHHHHHhhcCCC--cccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCC-----Cceeeeec
Confidence            6899999984 79998  8999999999999999999999999999999999999999999999999     89999999


Q ss_pred             cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876           80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT  159 (627)
Q Consensus        80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~  159 (627)
                      +|++.|+|+||++|+++++++.++++||+++|+||.++|..+++.+....+..++++|||++|||+.||..++..+... 
T Consensus       155 iG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~-  233 (375)
T PTZ00452        155 SGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKES-  233 (375)
T ss_pred             CCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhcc-
Confidence            9999999999999999999999999999999999999999888877665577899999999999999988776432110 


Q ss_pred             hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876          160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA  239 (627)
Q Consensus       160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~  239 (627)
                                                                                                      
T Consensus       234 --------------------------------------------------------------------------------  233 (375)
T PTZ00452        234 --------------------------------------------------------------------------------  233 (375)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876          240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG  319 (627)
Q Consensus       240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~  319 (627)
                                                                 +.....|.|   ||                       
T Consensus       234 -------------------------------------------~~~~~~y~L---PD-----------------------  244 (375)
T PTZ00452        234 -------------------------------------------NSQDSPYKL---PD-----------------------  244 (375)
T ss_pred             -------------------------------------------CCcCceEEC---CC-----------------------
Confidence                                                       000012332   22                       


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876          320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ  399 (627)
Q Consensus       320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~  399 (627)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (375)
T PTZ00452        245 --------------------------------------------------------------------------------  244 (375)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876          400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE  479 (627)
Q Consensus       400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~  479 (627)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (375)
T PTZ00452        245 --------------------------------------------------------------------------------  244 (375)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHH
Q 006876          480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSE  559 (627)
Q Consensus       480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~e  559 (627)
                                ++.|.++.|||.|||+||+|+++|.+..||+++|.+||.+   ||+|+|+.|++||||+||+|+||||.+
T Consensus       245 ----------g~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~---c~~d~r~~L~~nIvL~GG~Sl~~Gf~~  311 (375)
T PTZ00452        245 ----------GNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKK---CDLDLRQELCRNIVLSGGTTLFPGIAN  311 (375)
T ss_pred             ----------CCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHh---CCHhHHHHhhccEEEecccccccCHHH
Confidence                      4789999999999999999999999999999999999995   799999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876          560 RLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL  623 (627)
Q Consensus       560 RL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~  623 (627)
                      ||++||+.++|...+++|+.+++|.+++|+||||+|++++|+++||||+||+|+|++++++||+
T Consensus       312 RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~  375 (375)
T PTZ00452        312 RLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF  375 (375)
T ss_pred             HHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence            9999999999998999999999999999999999999999999999999999999999999885

>PTZ00466 actin-like protein; Provisional

Probab=100.00  E-value=1.1e-65  Score=555.36  Aligned_cols=292  Identities=31%  Similarity=0.509  Sum_probs=267.3

Q ss_pred             CHHHHHHHHhhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEec
Q 006876            1 MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICP   80 (627)
Q Consensus         1 mE~iwd~if~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDi   80 (627)
                      ||.||+|+|++|+++  |.++||||||++++|+..|++|+|+|||.|+||+++++.+++||+||+|     .+||||||+
T Consensus        89 ~e~iw~~~f~~l~v~--~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g-----~~tglVVD~  161 (380)
T PTZ00466         89 MENIWIHVYNSMKIN--SEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCG-----KTNGTVLDC  161 (380)
T ss_pred             HHHHHHHHHhhcccC--CccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcC-----CceEEEEeC
Confidence            689999999989999  7999999999999999999999999999999999999999999999999     899999999


Q ss_pred             CCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCch
Q 006876           81 GFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTK  160 (627)
Q Consensus        81 G~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~~  160 (627)
                      |++.|+|+||++|+++.+++.++++||+++|+||+++|..++..+....+.+++++|||++|||+.||..++.....   
T Consensus       162 G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~---  238 (380)
T PTZ00466        162 GDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEK---  238 (380)
T ss_pred             CCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhccc---
Confidence            99999999999999999999999999999999999999988776666667889999999999999998776532100   


Q ss_pred             hhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHHH
Q 006876          161 EAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA  240 (627)
Q Consensus       161 ~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~  240 (627)
                                         .                                                            
T Consensus       239 -------------------~------------------------------------------------------------  239 (380)
T PTZ00466        239 -------------------A------------------------------------------------------------  239 (380)
T ss_pred             -------------------c------------------------------------------------------------
Confidence                               0                                                            


Q ss_pred             hhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhHH
Q 006876          241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGR  320 (627)
Q Consensus       241 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~r  320 (627)
                                                                 .....|.|   ||                        
T Consensus       240 -------------------------------------------~~~~~y~L---Pd------------------------  249 (380)
T PTZ00466        240 -------------------------------------------LTTLPYIL---PD------------------------  249 (380)
T ss_pred             -------------------------------------------ccceeEEC---CC------------------------
Confidence                                                       00012322   22                        


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHH
Q 006876          321 QRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQR  400 (627)
Q Consensus       321 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~~  400 (627)
                                                                                                      
T Consensus       250 --------------------------------------------------------------------------------  249 (380)
T PTZ00466        250 --------------------------------------------------------------------------------  249 (380)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCccccC
Q 006876          401 ERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEI  480 (627)
Q Consensus       401 ~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~~  480 (627)
                                                                                                      
T Consensus       250 --------------------------------------------------------------------------------  249 (380)
T PTZ00466        250 --------------------------------------------------------------------------------  249 (380)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHHH
Q 006876          481 PRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSER  560 (627)
Q Consensus       481 ~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~eR  560 (627)
                               +..|.++.|||+|||+||+|+++|.+..||+++|.+||.+   ||+|+|+.|++||||+||+|+||||.+|
T Consensus       250 ---------g~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~---c~~d~r~~L~~nIvL~GG~Sl~~Gf~~R  317 (380)
T PTZ00466        250 ---------GSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITR---ADMDLRRTLYSHIVLSGGTTMFHGFGDR  317 (380)
T ss_pred             ---------CcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHh---CChhhHHHHhhcEEEeCCccccCCHHHH
Confidence                     4689999999999999999999999999999999999995   7999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876          561 LEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL  623 (627)
Q Consensus       561 L~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~  623 (627)
                      |++||+.+.|...+++|+.+++|.+++|+|||++|++++|+++||||+||+|+|+++|++|++
T Consensus       318 L~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~  380 (380)
T PTZ00466        318 LLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF  380 (380)
T ss_pred             HHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence            999999999999999999999999999999999999999999999999999999999999875

>PTZ00281 actin; Provisional

Probab=100.00  E-value=1.4e-64  Score=546.08  Aligned_cols=293  Identities=30%  Similarity=0.568  Sum_probs=266.9

Q ss_pred             CHHHHHHHH-hhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876            1 MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC   79 (627)
Q Consensus         1 mE~iwd~if-~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD   79 (627)
                      ||.||+|+| ++|+++  |.++|||||||+++|+..|++|+|+|||.|+||+++++++++||+|++|     ++||||||
T Consensus        83 ~e~l~~~~f~~~l~v~--p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g-----~~tglVVD  155 (376)
T PTZ00281         83 MEKIWHHTFYNELRVA--PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVMD  155 (376)
T ss_pred             HHHHHHHHHHhhccCC--CccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC-----CceEEEEE
Confidence            689999998 579999  8999999999999999999999999999999999999999999999999     89999999


Q ss_pred             cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876           80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT  159 (627)
Q Consensus        80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~  159 (627)
                      +|++.|+|+||++|+++.++++++++||+++|+||+++|..+++.+....+.+++++|||++|||+.||..+++..... 
T Consensus       156 iG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~-  234 (376)
T PTZ00281        156 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASS-  234 (376)
T ss_pred             CCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcC-
Confidence            9999999999999999999999999999999999999999988877666678899999999999999987766421110 


Q ss_pred             hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876          160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA  239 (627)
Q Consensus       160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~  239 (627)
                                          .                                                           
T Consensus       235 --------------------~-----------------------------------------------------------  235 (376)
T PTZ00281        235 --------------------S-----------------------------------------------------------  235 (376)
T ss_pred             --------------------c-----------------------------------------------------------
Confidence                                0                                                           


Q ss_pred             HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876          240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG  319 (627)
Q Consensus       240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~  319 (627)
                                                                  .....|.|   ||                       
T Consensus       236 --------------------------------------------~~~~~y~L---Pd-----------------------  245 (376)
T PTZ00281        236 --------------------------------------------ALEKSYEL---PD-----------------------  245 (376)
T ss_pred             --------------------------------------------ccceeEEC---CC-----------------------
Confidence                                                        00012322   22                       


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876          320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ  399 (627)
Q Consensus       320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~  399 (627)
                                                                                                      
T Consensus       246 --------------------------------------------------------------------------------  245 (376)
T PTZ00281        246 --------------------------------------------------------------------------------  245 (376)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876          400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE  479 (627)
Q Consensus       400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~  479 (627)
                                                                                                      
T Consensus       246 --------------------------------------------------------------------------------  245 (376)
T PTZ00281        246 --------------------------------------------------------------------------------  245 (376)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHH
Q 006876          480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSE  559 (627)
Q Consensus       480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~e  559 (627)
                                ++.|.++.|||.|||+||+|+++|.+.+||+++|.+||.+   ||+|+|+.|++||||+||+|+||||.+
T Consensus       246 ----------g~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~---~~~d~r~~L~~nIvl~GG~s~~~Gf~~  312 (376)
T PTZ00281        246 ----------GQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMK---CDVDIRKDLYGNVVLSGGTTMFPGIAD  312 (376)
T ss_pred             ----------CCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHh---CChhHHHHHHhhccccCccccCcCHHH
Confidence                      4689999999999999999999999999999999999995   799999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876          560 RLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL  623 (627)
Q Consensus       560 RL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~  623 (627)
                      ||+.||+.++|...+++|+.+++|.+++|+|||++|++++|+++||||+||+|+|++++++||+
T Consensus       313 RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~  376 (376)
T PTZ00281        313 RMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF  376 (376)
T ss_pred             HHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence            9999999999998899999999999999999999999999999999999999999999999875

>PTZ00004 actin-2; Provisional

Probab=100.00  E-value=4.9e-63  Score=534.38  Aligned_cols=294  Identities=31%  Similarity=0.537  Sum_probs=266.2

Q ss_pred             CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876            1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC   79 (627)
Q Consensus         1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD   79 (627)
                      ||.||+|+|. +|+++  |.++|||||+++++|+..|++++|+|||.|+||++++++++++|+|++|     .+||||||
T Consensus        83 ~e~i~~~~~~~~l~v~--~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g-----~~tglVVD  155 (378)
T PTZ00004         83 MEKIWHHTFYNELRVA--PEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASG-----RTTGIVLD  155 (378)
T ss_pred             HHHHHHHHHHhhcccC--CccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcC-----CceEEEEE
Confidence            5899999984 79998  7999999999999999999999999999999999999999999999999     89999999


Q ss_pred             cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876           80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT  159 (627)
Q Consensus        80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~  159 (627)
                      +|++.|+|+||++|+++.++++++++||+++|+||+++|..+++.+....+..++++|||++|||+.||.+++...... 
T Consensus       156 iG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~-  234 (378)
T PTZ00004        156 SGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGS-  234 (378)
T ss_pred             CCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcC-
Confidence            9999999999999999999999999999999999999999988876555567899999999999999988776421110 


Q ss_pred             hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876          160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA  239 (627)
Q Consensus       160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~  239 (627)
                                          .                                                           
T Consensus       235 --------------------~-----------------------------------------------------------  235 (378)
T PTZ00004        235 --------------------S-----------------------------------------------------------  235 (378)
T ss_pred             --------------------c-----------------------------------------------------------
Confidence                                0                                                           


Q ss_pred             HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876          240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG  319 (627)
Q Consensus       240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~  319 (627)
                                                                 +.-...|.|   ||                       
T Consensus       236 -------------------------------------------~~~~~~y~l---Pd-----------------------  246 (378)
T PTZ00004        236 -------------------------------------------DKYEESYEL---PD-----------------------  246 (378)
T ss_pred             -------------------------------------------cccceEEEC---CC-----------------------
Confidence                                                       000012222   22                       


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876          320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ  399 (627)
Q Consensus       320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~  399 (627)
                                                                                                      
T Consensus       247 --------------------------------------------------------------------------------  246 (378)
T PTZ00004        247 --------------------------------------------------------------------------------  246 (378)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876          400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE  479 (627)
Q Consensus       400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~  479 (627)
                                                                                                      
T Consensus       247 --------------------------------------------------------------------------------  246 (378)
T PTZ00004        247 --------------------------------------------------------------------------------  246 (378)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCC-CCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChH
Q 006876          480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGID-QVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMS  558 (627)
Q Consensus       480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~-~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~  558 (627)
                                +..|+++.|||.|||+||+|+++|.+ ..||+++|.+||.+   ||+|+|+.|++||||+||+|+||||.
T Consensus       247 ----------g~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~---~~~d~r~~L~~nIvl~GG~s~~~Gf~  313 (378)
T PTZ00004        247 ----------GTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINK---CDIDIRKDLYGNIVLSGGTTMYRGLP  313 (378)
T ss_pred             ----------CCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHh---CChhHHHHHHhhEEeccchhcCcCHH
Confidence                      46899999999999999999999998 99999999999995   79999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876          559 ERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL  623 (627)
Q Consensus       559 eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~  623 (627)
                      +||+.||+.++|...+++|+.+++|.+++|+|||++|++++|+++||||+||+|+|++++++||+
T Consensus       314 ~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~  378 (378)
T PTZ00004        314 ERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF  378 (378)
T ss_pred             HHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence            99999999999998899999999999999999999999999999999999999999999999875

>PTZ00280 Actin-related protein 3; Provisional

Probab=100.00  E-value=3.7e-61  Score=525.55  Aligned_cols=302  Identities=25%  Similarity=0.412  Sum_probs=263.5

Q ss_pred             CHHHHHHHH-hhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhc----------cccC
Q 006876            1 MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYN----------QQYG   69 (627)
Q Consensus         1 mE~iwd~if-~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~----------G~~~   69 (627)
                      ||.||+|+| +.|+++  |.+||||||||+++|...|++++|+|||.|+||+++++.+++||+||+          |   
T Consensus        84 ~e~l~~~~~~~~L~~~--p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g---  158 (414)
T PTZ00280         84 MEKFWEQCIFKYLRCE--PEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGG---  158 (414)
T ss_pred             HHHHHHHHHHHhhccC--CCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCC---
Confidence            689999998 579998  789999999999999999999999999999999999999999999998          7   


Q ss_pred             ccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHH
Q 006876           70 ICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYF  149 (627)
Q Consensus        70 ~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~  149 (627)
                        .+||||||+|++.|+|+||++|+++.++++++++||+++|+||.++|..++..+......+++++|||++|||+.||.
T Consensus       159 --~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~  236 (414)
T PTZ00280        159 --TLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIA  236 (414)
T ss_pred             --ceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHH
Confidence              899999999999999999999999999999999999999999999999988877655567899999999999999988


Q ss_pred             HHHHHhhcCchhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHH
Q 006876          150 SEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQ  229 (627)
Q Consensus       150 ~E~~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~  229 (627)
                      ++++.+...                    +.                                                 
T Consensus       237 ~e~~~~~~~--------------------~~-------------------------------------------------  247 (414)
T PTZ00280        237 KEFEKYDSD--------------------PK-------------------------------------------------  247 (414)
T ss_pred             HHHHHhhcC--------------------cc-------------------------------------------------
Confidence            877543110                    00                                                 


Q ss_pred             HhhhhHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHH
Q 006876          230 LEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRR  309 (627)
Q Consensus       230 ~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~  309 (627)
                                                                            .....|.+   ||.            
T Consensus       248 ------------------------------------------------------~~~~~~~~---~d~------------  258 (414)
T PTZ00280        248 ------------------------------------------------------NHFKKYTA---VNS------------  258 (414)
T ss_pred             ------------------------------------------------------cccceEEC---CCC------------
Confidence                                                                  00011222   110            


Q ss_pred             HhhhhcchhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 006876          310 QIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGV  389 (627)
Q Consensus       310 q~~~k~~~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~  389 (627)
                                                                                                      
T Consensus       259 --------------------------------------------------------------------------------  258 (414)
T PTZ00280        259 --------------------------------------------------------------------------------  258 (414)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccHHHHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCC
Q 006876          390 GRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQ  469 (627)
Q Consensus       390 ~~~~r~s~~~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~  469 (627)
                                                                                                      
T Consensus       259 --------------------------------------------------------------------------------  258 (414)
T PTZ00280        259 --------------------------------------------------------------------------------  258 (414)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccccCCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCC-CCCccHHHHHhcccCCCCChhhHHhccCCeEEe
Q 006876          470 ESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGID-QVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMT  548 (627)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~-~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLt  548 (627)
                                      .+...+.|.|+.|||.|||+||+|+++|.+ ..||+++|.+||.+   ||+|+|+.|++||||+
T Consensus       259 ----------------~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~---~~~d~r~~L~~nIvL~  319 (414)
T PTZ00280        259 ----------------VTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQS---CPIDCRRPLYKNIVLS  319 (414)
T ss_pred             ----------------CCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHh---CChhhHHHHhhcEEEe
Confidence                            001135899999999999999999998766 45999999999995   6999999999999999


Q ss_pred             cCCCCCcChHHHHHHHHHhhc----------------CCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhh
Q 006876          549 GGCCLFPGMSERLEAGIRMIR----------------PCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE  612 (627)
Q Consensus       549 GG~s~ipGf~eRL~~EL~~l~----------------p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E  612 (627)
                      ||+|+||||.+||++||+.++                |...+++|+.++++.+++|+|||+||++++|+++||||+||+|
T Consensus       320 GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E  399 (414)
T PTZ00280        320 GGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDE  399 (414)
T ss_pred             CCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhc
Confidence            999999999999999999986                4466789999999999999999999999999999999999999


Q ss_pred             hChhHHHHhccCcC
Q 006876          613 KGENWLRRYQLQYT  626 (627)
Q Consensus       613 ~G~~iv~~k~~~~~  626 (627)
                      +|+++|+++.+..+
T Consensus       400 ~G~~i~~~~~~~~~  413 (414)
T PTZ00280        400 YGPSICRYNNVFHS  413 (414)
T ss_pred             cChHheeecccccC
Confidence            99999988755443

>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]

Probab=100.00  E-value=3e-60  Score=470.41  Aligned_cols=291  Identities=29%  Similarity=0.460  Sum_probs=261.5

Q ss_pred             CHHHHHHHH-hhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876            1 MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC   79 (627)
Q Consensus         1 mE~iwd~if-~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD   79 (627)
                      |+++|||+| ++|.++  |.+++|||||||+||.++|++|+|+|||+|+|.++|+..|++|+|||.|     ..||+|||
T Consensus        83 M~h~WDytF~ekl~id--p~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQG-----L~tGvVvD  155 (389)
T KOG0677|consen   83 MEHVWDYTFGEKLKID--PTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQG-----LLTGVVVD  155 (389)
T ss_pred             HHHHHHhhhhhhccCC--CccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhc-----ccceEEEe
Confidence            789999998 589999  8999999999999999999999999999999999999999999999999     99999999


Q ss_pred             cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876           80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT  159 (627)
Q Consensus        80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~  159 (627)
                      +|.+.|||+||++|+++++-++|++++|+++|.||.+||..+++.|+...+.+.++.|||++|||+-|+..|.+..... 
T Consensus       156 SGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalET-  234 (389)
T KOG0677|consen  156 SGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALET-  234 (389)
T ss_pred             cCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhh-
Confidence            9999999999999999999999999999999999999999999999998999999999999999999877765431110 


Q ss_pred             hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876          160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA  239 (627)
Q Consensus       160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~  239 (627)
                                                                                                      
T Consensus       235 --------------------------------------------------------------------------------  234 (389)
T KOG0677|consen  235 --------------------------------------------------------------------------------  234 (389)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876          240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG  319 (627)
Q Consensus       240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~  319 (627)
                                                               +.  -..+|.|   |                        
T Consensus       235 -----------------------------------------Tv--Lv~~YtL---P------------------------  244 (389)
T KOG0677|consen  235 -----------------------------------------TV--LVESYTL---P------------------------  244 (389)
T ss_pred             -----------------------------------------ee--eeeeeec---C------------------------
Confidence                                                     00  0013333   2                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876          320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ  399 (627)
Q Consensus       320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~  399 (627)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (389)
T KOG0677|consen  245 --------------------------------------------------------------------------------  244 (389)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876          400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE  479 (627)
Q Consensus       400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~  479 (627)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (389)
T KOG0677|consen  245 --------------------------------------------------------------------------------  244 (389)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHH
Q 006876          480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSE  559 (627)
Q Consensus       480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~e  559 (627)
                               ++..|.+|.|||.+||+||+|.+++.+.+|+.++++++|+.   .|+|+|..||++|||+||+|+.||+..
T Consensus       245 ---------DGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQa---aDiD~R~~lYkhIVLSGGstMYPGLPS  312 (389)
T KOG0677|consen  245 ---------DGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQA---ADIDIRSELYKHIVLSGGSTMYPGLPS  312 (389)
T ss_pred             ---------CCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHH---hccchHHHHHhHeeecCCcccCCCCcH
Confidence                     25789999999999999999999999999999999999995   599999999999999999999999999


Q ss_pred             HHHHHHHhhcC-----------CCCCeeEeeCCCCccceeeccccccCc-CCCCcccccHHHHhhhChhHHHHh
Q 006876          560 RLEAGIRMIRP-----------CGAPIKVVRALDPVLDAWRGASVYATK-LQFPQQTFSRMDYYEKGENWLRRY  621 (627)
Q Consensus       560 RL~~EL~~l~p-----------~~~~v~V~~~~~~~~saW~GgsilAsl-~~f~~~~ITk~eY~E~G~~iv~~k  621 (627)
                      ||++||+.+.-           ..++++|-.+|.|.+.+++||+++|++ ..-+.+|+||+||+|.|...+.+.
T Consensus       313 RLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~  386 (389)
T KOG0677|consen  313 RLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL  386 (389)
T ss_pred             HHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence            99999987531           235678888899999999999999984 456889999999999999998764

>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton

Probab=100.00  E-value=8.7e-58  Score=493.58  Aligned_cols=292  Identities=38%  Similarity=0.597  Sum_probs=248.1

Q ss_pred             CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876            1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC   79 (627)
Q Consensus         1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD   79 (627)
                      +|.||+|+|. .|+++  +.++|||||+|+++++..|++++++|||.|+||+|+++++++||+|++|     .+||||||
T Consensus        76 ~e~i~~~~~~~~l~~~--~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g-----~~tglVVD  148 (393)
T PF00022_consen   76 LEEIWDYIFSNLLKVD--PSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASG-----RTTGLVVD  148 (393)
T ss_dssp             HHHHHHHHHHTTT-SS--GGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTT-----BSSEEEEE
T ss_pred             cccccccccccccccc--cccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccc-----cccccccc
Confidence            4889999996 58888  7999999999999999999999999999999999999999999999999     99999999


Q ss_pred             cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCC-----------------CCcccHHHHHHHHHhcc
Q 006876           80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQH-----------------MTKLTWEKVEDLKMEHC  142 (627)
Q Consensus        80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~-----------------~~~~~~~~ve~IKE~~C  142 (627)
                      +|++.|+|+||++|+++.+++.++++||++++.||+++|..++..+                 ....+..+++++|+.+|
T Consensus       149 ~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~  228 (393)
T PF00022_consen  149 IGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECC  228 (393)
T ss_dssp             ESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHH
T ss_pred             cceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhh
Confidence            9999999999999999999999999999999999999999863321                 12235678999999999


Q ss_pred             ccccCHHHHHHHhhcCchhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhh
Q 006876          143 YIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHG  222 (627)
Q Consensus       143 yVa~Dy~~E~~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~  222 (627)
                      ||+.++..+......                                                                 
T Consensus       229 ~v~~~~~~~~~~~~~-----------------------------------------------------------------  243 (393)
T PF00022_consen  229 YVSEDPDEEQEEQAS-----------------------------------------------------------------  243 (393)
T ss_dssp             SGGSSHHHHHHHHHC-----------------------------------------------------------------
T ss_pred             hcccccccccccccc-----------------------------------------------------------------
Confidence            999886651100000                                                                 


Q ss_pred             HHHHHHHHhhhhHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHH
Q 006876          223 LEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLE  302 (627)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~e  302 (627)
                                                                                  +.....|.|   ||      
T Consensus       244 ------------------------------------------------------------~~~~~~~~l---Pd------  254 (393)
T PF00022_consen  244 ------------------------------------------------------------ENPEKSYEL---PD------  254 (393)
T ss_dssp             ------------------------------------------------------------STTTEEEE----TT------
T ss_pred             ------------------------------------------------------------cccceeccc---cc------
Confidence                                                                        000012222   22      


Q ss_pred             HHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 006876          303 QLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNG  382 (627)
Q Consensus       303 q~kekr~q~~~k~~~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~  382 (627)
                                                                                                      
T Consensus       255 --------------------------------------------------------------------------------  254 (393)
T PF00022_consen  255 --------------------------------------------------------------------------------  254 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCcccccHHHHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcC
Q 006876          383 NNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVD  462 (627)
Q Consensus       383 ~~~~~~~~~~~r~s~~~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d  462 (627)
                                                                                                      
T Consensus       255 --------------------------------------------------------------------------------  254 (393)
T PF00022_consen  255 --------------------------------------------------------------------------------  254 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCccccCCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCC-------CccHHHHHhcccCCCCCh
Q 006876          463 PTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQV-------GLDEMTGVSIRRLPTKDE  535 (627)
Q Consensus       463 p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~-------gL~e~I~~sI~~~~~c~~  535 (627)
                                                 ++.+.++.|||.+||+||+|+.+|.+..       ||+++|.+||.+   ||+
T Consensus       255 ---------------------------g~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~---~~~  304 (393)
T PF00022_consen  255 ---------------------------GQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISK---CPI  304 (393)
T ss_dssp             ---------------------------SSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHT---STT
T ss_pred             ---------------------------ccccccccccccccccccccccccccccccccccchhhhhhhhhhhc---ccc
Confidence                                       4689999999999999999999999877       999999999995   699


Q ss_pred             hhHHhccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCC-CCccceeeccccccCcCCCCcccccHHHHhhhC
Q 006876          536 DLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRAL-DPVLDAWRGASVYATKLQFPQQTFSRMDYYEKG  614 (627)
Q Consensus       536 d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~-~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G  614 (627)
                      |+|+.|++|||||||+|+||||.+||+.||..+.|...+++|+.++ +|.+++|+|||++|++++|+++||||+||+|+|
T Consensus       305 d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G  384 (393)
T PF00022_consen  305 DLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYG  384 (393)
T ss_dssp             TTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHG
T ss_pred             ccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcC
Confidence            9999999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             hhHHHHhcc
Q 006876          615 ENWLRRYQL  623 (627)
Q Consensus       615 ~~iv~~k~~  623 (627)
                      +++++|||+
T Consensus       385 ~~~i~rkc~  393 (393)
T PF00022_consen  385 PSIIHRKCF  393 (393)
T ss_dssp             GGGHHHHT-
T ss_pred             cceeeecCC
Confidence            999999986

These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....

>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]

Probab=100.00  E-value=1.9e-56  Score=454.33  Aligned_cols=318  Identities=30%  Similarity=0.475  Sum_probs=271.7

Q ss_pred             HHHHHHHhhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhh-cccc--C---ccCcceE
Q 006876            3 YILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKY-NQQY--G---ICNKDGL   76 (627)
Q Consensus         3 ~iwd~if~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya-~G~~--~---~~~~tGL   76 (627)
                      .+|||+|...+.+....++.|++|+|.++-++..+.+.|+|||.|+|.+++-+..+.|+.+. +-..  .   ....++|
T Consensus        76 ~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~l  155 (400)
T KOG0680|consen   76 QVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCL  155 (400)
T ss_pred             HHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEE
Confidence            69999997655332268999999999999999999999999999999999999999998776 2100  0   1134899


Q ss_pred             EEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhh
Q 006876           77 AICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQ  156 (627)
Q Consensus        77 VVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~  156 (627)
                      |||+||+.|||+||+.|.++..+++|+++||+.||++|++++++|+.+++.  +..++++|||.+||||+||.++|..+.
T Consensus       156 VIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmd--ET~vVNeiKEdvcfVSqnF~~~m~~~~  233 (400)
T KOG0680|consen  156 VIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMD--ETYVVNEIKEDVCFVSQNFKEDMDIAK  233 (400)
T ss_pred             EEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccc--hhhhhhhhhhheEEechhhHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999887  778999999999999999999998765


Q ss_pred             cCchhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHH
Q 006876          157 KGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEEN  236 (627)
Q Consensus       157 ~~~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~  236 (627)
                      .+.                                                                             
T Consensus       234 ~k~-----------------------------------------------------------------------------  236 (400)
T KOG0680|consen  234 TKF-----------------------------------------------------------------------------  236 (400)
T ss_pred             hcc-----------------------------------------------------------------------------
Confidence            420                                                                             


Q ss_pred             HHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcc
Q 006876          237 DIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTT  316 (627)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~  316 (627)
                                                                  ..++-...|.|   ||...+      |         
T Consensus       237 --------------------------------------------~~~~~~i~YvL---PDF~T~------k---------  254 (400)
T KOG0680|consen  237 --------------------------------------------QENKVMIDYVL---PDFSTS------K---------  254 (400)
T ss_pred             --------------------------------------------ccceeEEEEec---CCcccc------c---------
Confidence                                                        00112346877   886433      0         


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 006876          317 TEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLN  396 (627)
Q Consensus       317 ~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s  396 (627)
                                                       -                                    |.|.+     
T Consensus       255 ---------------------------------~------------------------------------Gyvr~-----  260 (400)
T KOG0680|consen  255 ---------------------------------R------------------------------------GYVRN-----  260 (400)
T ss_pred             ---------------------------------c------------------------------------eeEec-----
Confidence                                             0                                    01110     


Q ss_pred             HHHHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCc
Q 006876          397 AAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQS  476 (627)
Q Consensus       397 ~~~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~  476 (627)
                                          .|                 .                               +        
T Consensus       261 --------------------~~-----------------v-------------------------------k--------  264 (400)
T KOG0680|consen  261 --------------------ED-----------------V-------------------------------K--------  264 (400)
T ss_pred             --------------------CC-----------------C-------------------------------C--------
Confidence                                00                 0                               0        


Q ss_pred             cccCCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcC
Q 006876          477 AAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPG  556 (627)
Q Consensus       477 ~~~~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipG  556 (627)
                               +..+.+.|+|++|||.+||+||+||.+|++++||+++|..||..   ||..+|+.|+.|||++||+++|||
T Consensus       265 ---------~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~---~Pe~~~p~l~~NIv~iGGn~~fPg  332 (400)
T KOG0680|consen  265 ---------LPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSM---LPEEVRPLLLENIVCIGGNSNFPG  332 (400)
T ss_pred             ---------CCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHh---CHHHHHHHHHhcEEEecCccCCcc
Confidence                     01123899999999999999999999999999999999999995   699999999999999999999999


Q ss_pred             hHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876          557 MSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL  623 (627)
Q Consensus       557 f~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~  623 (627)
                      |.+||..||+.++|.++.++|+.+.||..-+|.||+-+|.+++|..+||||+||+|+|++++.+|++
T Consensus       333 F~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~~  399 (400)
T KOG0680|consen  333 FRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKRF  399 (400)
T ss_pred             hHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCchhhhhhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999876

>smart00268 ACTIN Actin

Probab=100.00  E-value=7.2e-56  Score=476.40  Aligned_cols=296  Identities=34%  Similarity=0.586  Sum_probs=263.2

Q ss_pred             CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876            1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC   79 (627)
Q Consensus         1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD   79 (627)
                      +|.+|+|+|. .|+++  +.++|||||+|++++...|++++++|||.|+||+++++.++++++|++|     .++|||||
T Consensus        77 ~e~i~~~~~~~~l~~~--~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVD  149 (373)
T smart00268       77 MEKIWDYTFFNELRVE--PEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG-----RTTGLVID  149 (373)
T ss_pred             HHHHHHHHHhhhcCCC--CccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-----CCEEEEEe
Confidence            5889999997 79998  7899999999999999999999999999999999999999999999999     89999999


Q ss_pred             cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876           80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT  159 (627)
Q Consensus        80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~  159 (627)
                      +|++.|+|+||++|+++.++++++++||.+++++|.++|...+..+....+.++++.||+++|||+.++..+++..... 
T Consensus       150 iG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~-  228 (373)
T smart00268      150 SGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARES-  228 (373)
T ss_pred             cCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhc-
Confidence            9999999999999999999999999999999999999998855444444567899999999999999887766432110 


Q ss_pred             hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876          160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA  239 (627)
Q Consensus       160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~  239 (627)
                                   .      .                                                           
T Consensus       229 -------------~------~-----------------------------------------------------------  230 (373)
T smart00268      229 -------------S------E-----------------------------------------------------------  230 (373)
T ss_pred             -------------c------c-----------------------------------------------------------
Confidence                         0      0                                                           


Q ss_pred             HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876          240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG  319 (627)
Q Consensus       240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~  319 (627)
                                                                .......|.|   |                        
T Consensus       231 ------------------------------------------~~~~~~~~~l---p------------------------  241 (373)
T smart00268      231 ------------------------------------------SSKLEKTYEL---P------------------------  241 (373)
T ss_pred             ------------------------------------------ccccceeEEC---C------------------------
Confidence                                                      0000001111   1                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876          320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ  399 (627)
Q Consensus       320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~  399 (627)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (373)
T smart00268      242 --------------------------------------------------------------------------------  241 (373)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876          400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE  479 (627)
Q Consensus       400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~  479 (627)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (373)
T smart00268      242 --------------------------------------------------------------------------------  241 (373)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHH
Q 006876          480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSE  559 (627)
Q Consensus       480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~e  559 (627)
                               ++..+.++.|||.+||+||+|+++|.+..||+++|..+|.+   ||+|+|+.|++|||||||+|+||||.+
T Consensus       242 ---------dg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~---~~~d~r~~l~~nIvltGG~s~i~Gl~~  309 (373)
T smart00268      242 ---------DGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQK---CDIDVRKDLYENIVLSGGSTLIPGFGE  309 (373)
T ss_pred             ---------CCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHh---CCHhHHHHHHhCeEeecccccCcCHHH
Confidence                     24678999999999999999999999999999999999995   699999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876          560 RLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL  623 (627)
Q Consensus       560 RL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~  623 (627)
                      ||++||+.+.|...+++|..+++|.+++|+|||++|++++|..+||||+||+|+|++++++|||
T Consensus       310 RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~  373 (373)
T smart00268      310 RLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF  373 (373)
T ss_pred             HHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence            9999999999988899999899999999999999999999999999999999999999999986

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]

Probab=100.00  E-value=2.4e-54  Score=448.33  Aligned_cols=321  Identities=26%  Similarity=0.421  Sum_probs=242.6

Q ss_pred             CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876            1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC   79 (627)
Q Consensus         1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD   79 (627)
                      ++.+|+|+|. +|+++  |.+||+|||||++|++.+|++++|+|||.|+||+++++.+++++.||+|     +.||||||
T Consensus        88 ~~~~w~~~~~~~Lk~~--p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G-----rstalVvD  160 (426)
T KOG0679|consen   88 FEMQWRYAYKNQLKVN--PEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG-----RSTALVVD  160 (426)
T ss_pred             HHHHHHHHHhhhhhcC--ccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC-----CCceEEEE
Confidence            3689999996 89999  8899999999999999999999999999999999999999999999999     99999999


Q ss_pred             cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876           80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT  159 (627)
Q Consensus        80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~  159 (627)
                      ||+..|+|+||+||+++.+++.+.++||..|+..++++|..++..+..      +..||.+-- |-.-|...   |..  
T Consensus       161 iGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P------~y~ia~k~~-v~~g~~an---~~~--  228 (426)
T KOG0679|consen  161 IGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIP------MYNIASKEP-VREGYPAN---AVL--  228 (426)
T ss_pred             ecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCc------HHHhhhccc-ccccCcch---hhh--
Confidence            999999999999999999999999999999999999999988766543      123332211 11000000   000  


Q ss_pred             hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876          160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA  239 (627)
Q Consensus       160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~  239 (627)
                                +.++           .|+                                ..+   ....+.+.-..+++
T Consensus       229 ----------~~~~-----------~d~--------------------------------tes---~~~y~~~~v~~e~k  252 (426)
T KOG0679|consen  229 ----------RVSI-----------PDL--------------------------------TES---YHNYMEQRVYQEFK  252 (426)
T ss_pred             ----------cCCh-----------hHH--------------------------------HHH---HHHHHHHHHHHHHH
Confidence                      0000           000                                000   00000000000000


Q ss_pred             HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876          240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG  319 (627)
Q Consensus       240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~  319 (627)
                      .                                                 .++.|+                        
T Consensus       253 e-------------------------------------------------~v~qv~------------------------  259 (426)
T KOG0679|consen  253 E-------------------------------------------------SVLQVS------------------------  259 (426)
T ss_pred             H-------------------------------------------------HHHhcc------------------------
Confidence            0                                                 000011                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876          320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ  399 (627)
Q Consensus       320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~  399 (627)
                                                                                                      
T Consensus       260 --------------------------------------------------------------------------------  259 (426)
T KOG0679|consen  260 --------------------------------------------------------------------------------  259 (426)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876          400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE  479 (627)
Q Consensus       400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~  479 (627)
                                                                                    |-.|+...       .+.
T Consensus       260 --------------------------------------------------------------dtp~de~~-------~~~  270 (426)
T KOG0679|consen  260 --------------------------------------------------------------DTPFDEEV-------AAQ  270 (426)
T ss_pred             --------------------------------------------------------------CCCCcccc-------ccc
Confidence                                                                          11121110       011


Q ss_pred             CCCcCCCCCCCcEEEcCcccccccccCcCCCCCC------------CCCCCccHHHHHhcccCCCCChhhHHhccCCeEE
Q 006876          480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVG------------IDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILM  547 (627)
Q Consensus       480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g------------~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvL  547 (627)
                      +++.+.+-..+++.++|.|||++||.||+|+++-            ....|+++++..||.   .||.|+|..|++||||
T Consensus       271 i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~---~cDvdiR~~L~~nViv  347 (426)
T KOG0679|consen  271 IPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSIN---MCDVDIRSSLLGNVIV  347 (426)
T ss_pred             CCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCchHHHHhhhc---cChHHHHHHhhccEEE
Confidence            1222222235679999999999999999999762            123599999999999   4799999999999999


Q ss_pred             ecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCC---CCccceeeccccccCcCCCCcccccHHHHhhhCh-hHHHHhc
Q 006876          548 TGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRAL---DPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGE-NWLRRYQ  622 (627)
Q Consensus       548 tGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~---~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~-~iv~~k~  622 (627)
                      |||+|+|+||.+||.+||....|.+ +++|++..   +|+|++|+||||||||++|+++||+|+||+|.|. ..+.++|
T Consensus       348 tGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc  425 (426)
T KOG0679|consen  348 TGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRC  425 (426)
T ss_pred             ecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence            9999999999999999999999988 99999765   7999999999999999999999999999999999 7777766

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=100.00  E-value=2e-53  Score=457.31  Aligned_cols=292  Identities=35%  Similarity=0.553  Sum_probs=259.0

Q ss_pred             CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876            1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC   79 (627)
Q Consensus         1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD   79 (627)
                      +|.+|+|+|. .|.++  +.++||+|++|++++...|++++++|||.|++|+|++++++++|+|++|     .+||||||
T Consensus        77 ~e~~~~~~~~~~l~~~--~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVD  149 (371)
T cd00012          77 MEKIWDHLFFNELKVN--PEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASG-----RTTGLVVD  149 (371)
T ss_pred             HHHHHHHHHHHhcCCC--CCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcC-----CCeEEEEE
Confidence            4789999996 57777  6899999999999999999999999999999999999999999999999     89999999


Q ss_pred             cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876           80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT  159 (627)
Q Consensus        80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~  159 (627)
                      +|++.|+|+||++|+++.+++.++++||++++++|.++|..+++.+....+...+++||+++|||+.++..++...... 
T Consensus       150 iG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~-  228 (371)
T cd00012         150 SGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKE-  228 (371)
T ss_pred             CCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhcc-
Confidence            9999999999999999999999999999999999999999888766556678899999999999998877654210000 


Q ss_pred             hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876          160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA  239 (627)
Q Consensus       160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~  239 (627)
                                        ...                                                           
T Consensus       229 ------------------~~~-----------------------------------------------------------  231 (371)
T cd00012         229 ------------------TSL-----------------------------------------------------------  231 (371)
T ss_pred             ------------------CCc-----------------------------------------------------------
Confidence                              000                                                           


Q ss_pred             HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876          240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG  319 (627)
Q Consensus       240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~  319 (627)
                                                                   ....|.|   |                        
T Consensus       232 ---------------------------------------------~~~~~~l---p------------------------  239 (371)
T cd00012         232 ---------------------------------------------LEKTYEL---P------------------------  239 (371)
T ss_pred             ---------------------------------------------cceeEEC---C------------------------
Confidence                                                         0001111   1                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876          320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ  399 (627)
Q Consensus       320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~  399 (627)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (371)
T cd00012         240 --------------------------------------------------------------------------------  239 (371)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876          400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE  479 (627)
Q Consensus       400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~  479 (627)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (371)
T cd00012         240 --------------------------------------------------------------------------------  239 (371)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHH
Q 006876          480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSE  559 (627)
Q Consensus       480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~e  559 (627)
                               .+..|.++.|||.+||+||+|+++|....||+++|..+|..   ||++.|+.+++||+||||+|+||||.+
T Consensus       240 ---------d~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~---~~~~~~~~l~~~Ivl~GG~s~~~gl~~  307 (371)
T cd00012         240 ---------DGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINK---CDIDLRKDLYSNIVLSGGSTLFPGFGE  307 (371)
T ss_pred             ---------CCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHh---CCHhHHHHHHhCEEEeCCccCCcCHHH
Confidence                     14679999999999999999999999999999999999995   699999999999999999999999999


Q ss_pred             HHHHHHHhhcCC--CCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHh
Q 006876          560 RLEAGIRMIRPC--GAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRY  621 (627)
Q Consensus       560 RL~~EL~~l~p~--~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k  621 (627)
                      ||++||..+.|.  ...+++...++|.+++|+|||++|++++|+.+||||+||+|+|++++++|
T Consensus       308 rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k  371 (371)
T cd00012         308 RLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK  371 (371)
T ss_pred             HHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence            999999999997  56678888889999999999999999999999999999999999999875

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>COG5277 Actin and related proteins [Cytoskeleton]

Probab=100.00  E-value=1.6e-52  Score=457.73  Aligned_cols=309  Identities=36%  Similarity=0.538  Sum_probs=261.3

Q ss_pred             CHHHHHHHHhh---cCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCc--ce
Q 006876            1 MEYILDFAFDR---LGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNK--DG   75 (627)
Q Consensus         1 mE~iwd~if~~---L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~--tG   75 (627)
                      ||.+|+|+|..   +...  +.+|||+||||+++|.++|+++++++||+|+||+++++.+++|++|++|     ..  +|
T Consensus        86 ~e~~w~~~~~~~~~~~~~--~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g-----~~~~~g  158 (444)
T COG5277          86 MEQIWDYTFFNKGDLLPS--PEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASG-----SSDETG  158 (444)
T ss_pred             HHHHHHHhhcchhhccCC--CcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcC-----CCCCce
Confidence            68999999853   5566  7999999999999999999999999999999999999999999999999     77  99


Q ss_pred             EEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhc-----cCCCCCCc---ccHHHHHHHHHhcc-----
Q 006876           76 LAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL-----KHPQHMTK---LTWEKVEDLKMEHC-----  142 (627)
Q Consensus        76 LVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~-----r~~~~~~~---~~~~~ve~IKE~~C-----  142 (627)
                      +|||+|++.|||+||+||.++.+++.|+++||+++|.||+++|..     ++..+...   .+.++++.||+.+|     
T Consensus       159 ~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~  238 (444)
T COG5277         159 LVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDE  238 (444)
T ss_pred             EEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhcccccc
Confidence            999999999999999999999999999999999999999999999     55555543   46899999999999     


Q ss_pred             --ccccCHHHHHHHhhcCchhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Q 006876          143 --YIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQI  220 (627)
Q Consensus       143 --yVa~Dy~~E~~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l  220 (627)
                        |++.+..++.+.+...                               ++.+                           
T Consensus       239 ~~y~~~~~~~~~~e~~~~-------------------------------~~~~---------------------------  260 (444)
T COG5277         239 SAYVSLDAEEEFEEEEEK-------------------------------PAEK---------------------------  260 (444)
T ss_pred             ccchhhcchHHHHHHhhh-------------------------------hhhh---------------------------
Confidence              8887766666543220                               0000                           


Q ss_pred             hhHHHHHHHHhhhhHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccC
Q 006876          221 HGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS  300 (627)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~  300 (627)
                      .                                                               ....+.+        +
T Consensus       261 ~---------------------------------------------------------------~~~~~~~--------~  269 (444)
T COG5277         261 S---------------------------------------------------------------TESTFQL--------S  269 (444)
T ss_pred             c---------------------------------------------------------------ccccccc--------c
Confidence            0                                                               0000000        0


Q ss_pred             HHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 006876          301 LEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHT  380 (627)
Q Consensus       301 ~eq~kekr~q~~~k~~~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~  380 (627)
                      .                                                ..+                        .   
T Consensus       270 ~------------------------------------------------~~~------------------------~---  274 (444)
T COG5277         270 K------------------------------------------------ETS------------------------I---  274 (444)
T ss_pred             c------------------------------------------------hhc------------------------c---
Confidence            0                                                000                        0   


Q ss_pred             CCCCCCCCCCCcccccHHHHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhh
Q 006876          381 NGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQE  460 (627)
Q Consensus       381 ~~~~~~~~~~~~~r~s~~~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  460 (627)
                                                   ..                        .                        
T Consensus       275 -----------------------------~~------------------------~------------------------  277 (444)
T COG5277         275 -----------------------------AK------------------------E------------------------  277 (444)
T ss_pred             -----------------------------cc------------------------c------------------------
Confidence                                         00                        0                        


Q ss_pred             cCCCCCCCCCCCCCCccccCCCcCCCCCCCcEEEcCcc-cccccccCcCCC--CCCCCCCC-------------------
Q 006876          461 VDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVE-RFRCPEILFRPN--WVGIDQVG-------------------  518 (627)
Q Consensus       461 ~dp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~I~lg~E-rf~~pE~LF~Ps--l~g~~~~g-------------------  518 (627)
                         +|.                    ...+..|.++.| ||.+||.||+|.  ..+.+..|                   
T Consensus       278 ---~~~--------------------~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
T COG5277         278 ---SKE--------------------LPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPT  334 (444)
T ss_pred             ---ccc--------------------CCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccc
Confidence               000                    013578999999 999999999999  88877777                   


Q ss_pred             --------ccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeec
Q 006876          519 --------LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRG  590 (627)
Q Consensus       519 --------L~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~G  590 (627)
                              |++++.++|+.   ||.+.|+.|++|||||||+|+||||.+||++||+.+.|..+.++|+.+++|.+.+|+|
T Consensus       335 ~~~~~~~gl~e~v~~si~~---~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~G  411 (444)
T COG5277         335 NLGNDIAGLPELVYQSIQI---CDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLG  411 (444)
T ss_pred             cccccccchHHHHHHHHHh---ccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccc
Confidence                    99999999995   6999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876          591 ASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL  623 (627)
Q Consensus       591 gsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~  623 (627)
                      ||++|++++|..+||||+||+|+|++++++|++
T Consensus       412 aSila~~~~~~~~~itk~eY~e~G~~~~~~~~~  444 (444)
T COG5277         412 ASILASLETFQQLWITKEEYEEHGPDILQEKRF  444 (444)
T ss_pred             hhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence            999999999999999999999999999999875

>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]

Probab=100.00  E-value=3.5e-44  Score=365.35  Aligned_cols=302  Identities=27%  Similarity=0.415  Sum_probs=255.6

Q ss_pred             CHHHHHHH-HhhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhcccc---CccCcceE
Q 006876            1 MEYILDFA-FDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQY---GICNKDGL   76 (627)
Q Consensus         1 mE~iwd~i-f~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~---~~~~~tGL   76 (627)
                      ||.+|... |.+|..+  |++|-.|||||++|++.+|+.++|+|||.|+||.+|++.+++|||-++=..   ....-||+
T Consensus        88 mer~~~q~ifkylr~e--Pedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~  165 (415)
T KOG0678|consen   88 MERFWEQCIFKYLRAE--PEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGI  165 (415)
T ss_pred             HHHHHhhhhhhhhcCC--cccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeE
Confidence            78999988 5789999  899999999999999999999999999999999999999999988765211   12256999


Q ss_pred             EEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhh
Q 006876           77 AICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQ  156 (627)
Q Consensus        77 VVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~  156 (627)
                      |||.|.+.|||+||.+|+++..+++.++++|+++|.+.+.+|..++...+...+.+..+.|||++||++.|+..|..++.
T Consensus       166 VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~k~d  245 (415)
T KOG0678|consen  166 VIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFAKYD  245 (415)
T ss_pred             EEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999988777777888999999999999999888765432


Q ss_pred             cCchhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHH
Q 006876          157 KGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEEN  236 (627)
Q Consensus       157 ~~~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~  236 (627)
                      .                                                                               
T Consensus       246 ~-------------------------------------------------------------------------------  246 (415)
T KOG0678|consen  246 R-------------------------------------------------------------------------------  246 (415)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             HHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcc
Q 006876          237 DIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTT  316 (627)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~  316 (627)
                                                                                                      
T Consensus       247 --------------------------------------------------------------------------------  246 (415)
T KOG0678|consen  247 --------------------------------------------------------------------------------  246 (415)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 006876          317 TEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLN  396 (627)
Q Consensus       317 ~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s  396 (627)
                                                     +|..|++.                  .+.+                   
T Consensus       247 -------------------------------ep~K~ikq------------------~~~~-------------------  258 (415)
T KOG0678|consen  247 -------------------------------EPAKWIKQ------------------YTGI-------------------  258 (415)
T ss_pred             -------------------------------CHHHHHHH------------------Hhcc-------------------
Confidence                                           23334432                  0000                   


Q ss_pred             HHHHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCc
Q 006876          397 AAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQS  476 (627)
Q Consensus       397 ~~~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~  476 (627)
                                                                                                      
T Consensus       259 --------------------------------------------------------------------------------  258 (415)
T KOG0678|consen  259 --------------------------------------------------------------------------------  258 (415)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCC-CCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCc
Q 006876          477 AAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQ-VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFP  555 (627)
Q Consensus       477 ~~~~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~-~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ip  555 (627)
                             ++.+.....|++|.|||..||+||+|.+...+. ..|++++...|+.   ||+|.|+-||+||+++||+++|.
T Consensus       259 -------~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~---~pIdvrr~ly~nivlsggst~fk  328 (415)
T KOG0678|consen  259 -------NVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQH---CPIDVRRPLYKNIVLSGGSTMFK  328 (415)
T ss_pred             -------chhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhh---CCcccchhhhhHHhhccchHHHH
Confidence                   000111267899999999999999999876554 5699999999995   79999999999999999999999


Q ss_pred             ChHHHHHHHHHhhc--------------CCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHh
Q 006876          556 GMSERLEAGIRMIR--------------PCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRY  621 (627)
Q Consensus       556 Gf~eRL~~EL~~l~--------------p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k  621 (627)
                      +|..|++.++..+.              |....|+|+...-.++++|.|||++||.+.|-..+-||++|+|+|++|++..
T Consensus       329 ~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~si~r~~  408 (415)
T KOG0678|consen  329 DFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSICRTN  408 (415)
T ss_pred             HhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhChhhhhcC
Confidence            99999999887653              2334577777667789999999999999999999999999999999999864

>KOG0797 consensus Actin-related protein [Cytoskeleton]

Probab=99.96  E-value=4.5e-29  Score=266.70  Aligned_cols=142  Identities=15%  Similarity=0.155  Sum_probs=127.9

Q ss_pred             CHHHHHHHH-hhcCCCC-CCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEE
Q 006876            1 MEYILDFAF-DRLGANG-SEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAI   78 (627)
Q Consensus         1 mE~iwd~if-~~L~v~~-~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVV   78 (627)
                      ++.||+|++ ++|+|.+ ....+.+|++.|-..-+...+.+..+||-.++|.++.++..++++.||+|     .+++|||
T Consensus       206 lt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG-----lss~CVV  280 (618)
T KOG0797|consen  206 LTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG-----LSSACVV  280 (618)
T ss_pred             HHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC-----ccceeEE
Confidence            368999998 4799983 23678999999999888888899999999999999999999999999999     8999999


Q ss_pred             ecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCC-----CCCCcccHHHHHHHHHhccccccC
Q 006876           79 CPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHP-----QHMTKLTWEKVEDLKMEHCYIAPD  147 (627)
Q Consensus        79 DiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~-----~~~~~~~~~~ve~IKE~~CyVa~D  147 (627)
                      |+|.+.|+|++|-+|.+++++..++++||.++|..+..+|...++     ++....++.+++.+||++|.+..+
T Consensus       281 diGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d~lLl~~LKe~Fc~l~~a  354 (618)
T KOG0797|consen  281 DIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPIDWLLLNQLKEKFCHLRAA  354 (618)
T ss_pred             EccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHhccccHh
Confidence            999999999999999999999999999999999999999987543     455678999999999999998753

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=99.89  E-value=2.1e-23  Score=221.36  Aligned_cols=141  Identities=16%  Similarity=0.057  Sum_probs=113.9

Q ss_pred             CHHHHHHHHhhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEec
Q 006876            1 MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICP   80 (627)
Q Consensus         1 mE~iwd~if~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDi   80 (627)
                      +|.+|+|+|+++........+++++|.|+.++...|+.+.+ +||.++++.+++++++++|+|++|.......+++|||+
T Consensus        81 ~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDi  159 (335)
T PRK13930         81 TEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDI  159 (335)
T ss_pred             HHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEe
Confidence            58899999976533211346789999999998888877777 69999999999999999999999821111256899999


Q ss_pred             CCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccC
Q 006876           81 GFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPD  147 (627)
Q Consensus        81 G~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~D  147 (627)
                      |+++|+|+||..|.++.  ...+++||.++|++|.++|..++ .+  ..+...++.+|+++|+++.+
T Consensus       160 G~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~~K~~~~~~~~~  221 (335)
T PRK13930        160 GGGTTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVRRKY-NL--LIGERTAEEIKIEIGSAYPL  221 (335)
T ss_pred             CCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHHHHh-CC--CCCHHHHHHHHHHhhcCcCC
Confidence            99999999999999875  56789999999999999998753 22  23567899999999998755

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=99.86  E-value=8.4e-22  Score=210.16  Aligned_cols=138  Identities=14%  Similarity=0.099  Sum_probs=112.5

Q ss_pred             CHHHHHHHHh----hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceE
Q 006876            1 MEYILDFAFD----RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGL   76 (627)
Q Consensus         1 mE~iwd~if~----~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGL   76 (627)
                      ++.+|+|++.    .|+..  +..+++|+|.|+.++...|+.+.+ +|+.+|++.+++++++++|++++|.......+++
T Consensus        77 ~~~~l~~~~~~~~~~l~~~--~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~l  153 (335)
T PRK13929         77 TTDLLKQIMKKAGKNIGMT--FRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANV  153 (335)
T ss_pred             HHHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEE
Confidence            3678999985    46766  556799999999999999999999 8999999999999999999999872212246799


Q ss_pred             EEecCCCceeeeee-ecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccC
Q 006876           77 AICPGFSTTHVIPF-VEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPD  147 (627)
Q Consensus        77 VVDiG~~~T~IvPV-~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~D  147 (627)
                      |||+|++.|+++|+ ++|....   ..+++||.++|++|.++|...+ .+  ..+...+++||+++|+++.+
T Consensus       154 vvDiG~gtt~v~vi~~~~~~~~---~~~~~GG~~id~~l~~~l~~~~-~~--~~~~~~AE~iK~~l~~~~~~  219 (335)
T PRK13929        154 VVDIGGGTTEVAIISFGGVVSC---HSIRIGGDQLDEDIVSFVRKKY-NL--LIGERTAEQVKMEIGYALIE  219 (335)
T ss_pred             EEEeCCCeEEEEEEEeCCEEEe---cCcCCHHHHHHHHHHHHHHHHh-Cc--CcCHHHHHHHHHHHcCCCCC
Confidence            99999999999999 5554433   3468999999999999997543 22  23567899999999998654

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=99.86  E-value=1e-21  Score=208.90  Aligned_cols=139  Identities=13%  Similarity=0.038  Sum_probs=109.6

Q ss_pred             CHHHHHHHHhh-cCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876            1 MEYILDFAFDR-LGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC   79 (627)
Q Consensus         1 mE~iwd~if~~-L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD   79 (627)
                      |+.+|+|+|.+ +.... ...-++++|.|+.++...|+. ++.+|+.++++.+++++++++|+|++|.......+++|||
T Consensus        79 ~~~~~~~~l~~~~~~~~-~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvD  156 (333)
T TIGR00904        79 TEKMIKYFIKQVHSRKS-FFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVD  156 (333)
T ss_pred             HHHHHHHHHHHHhcccc-cCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEE
Confidence            47899999964 44321 111269999999999999887 5568999999999999999999999982111126789999


Q ss_pred             cCCCceeeeee-ecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccC
Q 006876           80 PGFSTTHVIPF-VEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPD  147 (627)
Q Consensus        80 iG~~~T~IvPV-~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~D  147 (627)
                      +|++.|+|++| ++|.++...   +++||.++|++|.+++..++.   ...+...++.+|+++|++..+
T Consensus       157 iG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l~~~~~---~~~~~~~ae~lK~~l~~~~~~  219 (333)
T TIGR00904       157 IGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYIRRTYN---LLIGEQTAERIKIEIGSAYPL  219 (333)
T ss_pred             cCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHHHHHhc---ccCCHHHHHHHHHHHhccccc
Confidence            99999999999 777776644   479999999999999876532   234567899999999998654

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=99.85  E-value=1.8e-21  Score=206.89  Aligned_cols=137  Identities=12%  Similarity=0.039  Sum_probs=106.2

Q ss_pred             CHHHHHHHHhh-cCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876            1 MEYILDFAFDR-LGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC   79 (627)
Q Consensus         1 mE~iwd~if~~-L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD   79 (627)
                      +|.+|.|+|.+ ++.   +.++|.+++..|.++...++++++.+|+.++++.+++++++++|+|++|........++|||
T Consensus        78 ~~~ll~~~~~~~~~~---~~~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvD  154 (334)
T PRK13927         78 TEKMLKYFIKKVHKN---FRPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVD  154 (334)
T ss_pred             HHHHHHHHHHHHhhc---cCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEE
Confidence            47899999964 444   24554444444567777788899999999999999999999999999982111124579999


Q ss_pred             cCCCceeeeee-ecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcccccc
Q 006876           80 PGFSTTHVIPF-VEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAP  146 (627)
Q Consensus        80 iG~~~T~IvPV-~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~  146 (627)
                      +|+++|+|+|+ ++|.+...+   +++||.++|++|.++|..++ .+  ..+...++++|+.+|++..
T Consensus       155 iGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~iK~~~~~~~~  216 (334)
T PRK13927        155 IGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNY-NL--LIGERTAERIKIEIGSAYP  216 (334)
T ss_pred             eCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHh-Cc--CcCHHHHHHHHHHhhccCC
Confidence            99999999999 777776554   47999999999999997543 22  2356789999999998764

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=99.74  E-value=2.6e-18  Score=183.21  Aligned_cols=138  Identities=12%  Similarity=0.064  Sum_probs=107.2

Q ss_pred             CHHHHHHHHhhcCCCCCCCccc-EEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876            1 MEYILDFAFDRLGANGSEIDHP-VLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC   79 (627)
Q Consensus         1 mE~iwd~if~~L~v~~~p~d~p-VLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD   79 (627)
                      ++.+|+|+++++.... +..+| +++|. |.+....+++.++.+|+.++++.+.+++++++|+|++|........++|||
T Consensus        76 ~~~~l~~~~~~~~~~~-~~~~p~~vitv-P~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvD  153 (336)
T PRK13928         76 TEKMLKYFINKACGKR-FFSKPRIMICI-PTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVD  153 (336)
T ss_pred             HHHHHHHHHHHHhccC-CCCCCeEEEEe-CCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEE
Confidence            3679999997664442 35677 88888 555566777888888999999999999999999999982111125689999


Q ss_pred             cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccc
Q 006876           80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIA  145 (627)
Q Consensus        80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa  145 (627)
                      +|+++|.|++|..|.++..  ..+++||.++|+.|.+.|..++ .+  ......++++|+.+|++.
T Consensus       154 iGggttdvsvv~~g~~~~~--~~~~lGG~did~~i~~~l~~~~-~~--~~~~~~ae~lK~~~~~~~  214 (336)
T PRK13928        154 IGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDEAIIRYIRKKY-KL--LIGERTAEEIKIKIGTAF  214 (336)
T ss_pred             eCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHHHHHHHHHHHh-ch--hcCHHHHHHHHHHhcccc
Confidence            9999999999999977654  4689999999999999987543 22  234567888888888764

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=99.50  E-value=6.4e-14  Score=148.80  Aligned_cols=137  Identities=17%  Similarity=0.088  Sum_probs=100.6

Q ss_pred             HHHHHHHHhh-cCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEec
Q 006876            2 EYILDFAFDR-LGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICP   80 (627)
Q Consensus         2 E~iwd~if~~-L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDi   80 (627)
                      +.++.|++++ ++-.. .....++++.|.-.+...|+.+.+.+- ..++..|+++..|+++.++.|-.-......+|||+
T Consensus        75 ~~~l~~~l~k~~~~~~-~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI  152 (326)
T PF06723_consen   75 EEMLRYFLKKALGRRS-FFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI  152 (326)
T ss_dssp             HHHHHHHHHHHHTSS--SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred             HHHHHHHHHHhccCCC-CCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence            5778888865 33221 345669999999999999999999975 58999999999999999999821111345799999


Q ss_pred             CCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccc
Q 006876           81 GFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIA  145 (627)
Q Consensus        81 G~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa  145 (627)
                      |.++|.|.-+..|.++.  .+.+++||.++++-+.+++..+|. +  .+....+++||+.++++.
T Consensus       153 G~GtTdiavislggiv~--s~si~~gG~~~DeaI~~~ir~~y~-l--~Ig~~tAE~iK~~~g~~~  212 (326)
T PF06723_consen  153 GGGTTDIAVISLGGIVA--SRSIRIGGDDIDEAIIRYIREKYN-L--LIGERTAEKIKIEIGSAS  212 (326)
T ss_dssp             -SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHHHHHHS-E--E--HHHHHHHHHHH-BSS
T ss_pred             CCCeEEEEEEECCCEEE--EEEEEecCcchhHHHHHHHHHhhC-c--ccCHHHHHHHHHhcceee
Confidence            99999999998888876  678899999999999999998873 3  468899999999998875

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=98.82  E-value=8.5e-08  Score=98.18  Aligned_cols=118  Identities=19%  Similarity=0.185  Sum_probs=88.4

Q ss_pred             HHHHHHHHh----hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEE
Q 006876            2 EYILDFAFD----RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLA   77 (627)
Q Consensus         2 E~iwd~if~----~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLV   77 (627)
                      +.++.++++    +++..    -..++++.|.......|+.+.+. ++.-|+.-+.+..+++++.++++     ...++|
T Consensus        43 ~~~l~~l~~~a~~~~g~~----~~~vvisVP~~~~~~~r~a~~~a-~~~aGl~~~~li~ep~Aaa~~~~-----~~~~~v  112 (239)
T TIGR02529        43 VEIVRRLKDTLEQKLGIE----LTHAATAIPPGTIEGDPKVIVNV-IESAGIEVLHVLDEPTAAAAVLQ-----IKNGAV  112 (239)
T ss_pred             HHHHHHHHHHHHHHhCCC----cCcEEEEECCCCCcccHHHHHHH-HHHcCCceEEEeehHHHHHHHhc-----CCCcEE
Confidence            345666652    34433    34699999988888888877765 45569999999999999888887     556799


Q ss_pred             EecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHh
Q 006876           78 ICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKME  140 (627)
Q Consensus        78 VDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~  140 (627)
                      ||+|++.|.+.-+..|.++.  .+.+++||.++|+.+.+.+.         ++...++.+|..
T Consensus       113 vDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~---------i~~~~AE~~K~~  164 (239)
T TIGR02529       113 VDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG---------ISFEEAEEYKRG  164 (239)
T ss_pred             EEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC---------CCHHHHHHHHHh
Confidence            99999999988888888775  56779999999988765442         244555666544

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=98.49  E-value=3e-06  Score=88.15  Aligned_cols=89  Identities=16%  Similarity=0.104  Sum_probs=71.7

Q ss_pred             cEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeE
Q 006876           22 PVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSC  101 (627)
Q Consensus        22 pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~  101 (627)
                      .|+++.|......++..+. -..+.-|+.-..+...+.++.++.+     ...++|||+|.+.|.++-+.+|.++.  ..
T Consensus        90 ~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~-----~~~~~vvDIGggtt~i~v~~~g~~~~--~~  161 (267)
T PRK15080         90 HAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLG-----IDNGAVVDIGGGTTGISILKDGKVVY--SA  161 (267)
T ss_pred             eEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhC-----CCCcEEEEeCCCcEEEEEEECCeEEE--Ee
Confidence            4677888777666777766 5567789988888899888888776     45689999999999998888888776  35


Q ss_pred             EecccHHHHHHHHHHHH
Q 006876          102 RTNIGGYHITDYLKQLL  118 (627)
Q Consensus       102 rl~iGG~~lt~yL~~lL  118 (627)
                      .+++||.++|+.+.+.+
T Consensus       162 ~~~~GG~~it~~Ia~~l  178 (267)
T PRK15080        162 DEPTGGTHMSLVLAGAY  178 (267)
T ss_pred             cccCchHHHHHHHHHHh
Confidence            67999999999987654

>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]

Probab=98.38  E-value=4.6e-06  Score=87.61  Aligned_cols=121  Identities=16%  Similarity=0.046  Sum_probs=94.3

Q ss_pred             cccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccC
Q 006876           20 DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRG   99 (627)
Q Consensus        20 d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a   99 (627)
                      .-.|+++.|...+...|+.+-+.+- .-+...|++...+.+|.++.|..-.-.+-+.|||+|.++|.|.-+..|-++.  
T Consensus       101 ~prI~i~vP~g~T~VErrAi~ea~~-~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~--  177 (342)
T COG1077         101 KPRIVICVPSGITDVERRAIKEAAE-SAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVS--  177 (342)
T ss_pred             CCcEEEEecCCccHHHHHHHHHHHH-hccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEE--
Confidence            3358888888899999999999876 4577899999999999999982211123489999999999988776655554  


Q ss_pred             eEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcccccc
Q 006876          100 SCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAP  146 (627)
Q Consensus       100 ~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~  146 (627)
                      ...+-+||..++.-+-..+..+|.-   .+-...+++||...+|+..
T Consensus       178 ~~Sirv~GD~~De~Ii~yvr~~~nl---~IGe~taE~iK~eiG~a~~  221 (342)
T COG1077         178 SSSVRVGGDKMDEAIIVYVRKKYNL---LIGERTAEKIKIEIGSAYP  221 (342)
T ss_pred             EeeEEEecchhhHHHHHHHHHHhCe---eecHHHHHHHHHHhccccc
Confidence            3456699999999999888876543   3456679999999888764

>TIGR01174 ftsA cell division protein FtsA

Probab=98.32  E-value=3.7e-06  Score=91.23  Aligned_cols=102  Identities=19%  Similarity=0.127  Sum_probs=77.5

Q ss_pred             ChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHH
Q 006876           32 PVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHIT  111 (627)
Q Consensus        32 p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt  111 (627)
                      ++.....+.+ +++..|+.-+.+..+++++.+++..........+|||+|+++|.++.+.+|.+..  .+.+++||.++|
T Consensus       156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it  232 (371)
T TIGR01174       156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT  232 (371)
T ss_pred             EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence            4555555555 4567788888888899888887642111123579999999999999999998765  577999999999


Q ss_pred             HHHHHHHhccCCCCCCcccHHHHHHHHHhccccc
Q 006876          112 DYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIA  145 (627)
Q Consensus       112 ~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa  145 (627)
                      +.+.+.|.         .+...++++|..++.+.
T Consensus       233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~  257 (371)
T TIGR01174       233 KDIAKALR---------TPLEEAERIKIKYGCAS  257 (371)
T ss_pred             HHHHHHhC---------CCHHHHHHHHHHeeEec
Confidence            99877542         35788999999998754

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=98.30  E-value=1.8e-06  Score=99.56  Aligned_cols=99  Identities=11%  Similarity=-0.056  Sum_probs=74.3

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeee--cCeec-c
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEPV-Y   97 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~--dG~~i-~   97 (627)
                      ..++||.|.......|+.+.+. .+.-|+.-+.+++.|++|++++|.......+-+|+|+|.+++.|.-+-  +|..- .
T Consensus       130 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vl  208 (599)
T TIGR01991       130 VGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVL  208 (599)
T ss_pred             ceEEEEECCCCCHHHHHHHHHH-HHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEE
Confidence            4699999999999999998877 577899999999999998887762222235679999999999876552  33221 1


Q ss_pred             cCeEEecccHHHHHHHHHHHHhc
Q 006876           98 RGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        98 ~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      ....-..+||.++++.|.+++..
T Consensus       209 a~~gd~~lGG~d~D~~l~~~l~~  231 (599)
T TIGR01991       209 ATGGDSALGGDDFDHALAKWILK  231 (599)
T ss_pred             EEcCCCCCCHHHHHHHHHHHHHH
Confidence            11122489999999999988764

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>CHL00094 dnaK heat shock protein 70

Probab=98.29  E-value=1.4e-05  Score=92.58  Aligned_cols=99  Identities=16%  Similarity=0.032  Sum_probs=74.3

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeec---c
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPV---Y   97 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i---~   97 (627)
                      ..++||.|.......|+.+.+.. +.-|+.-+.+++.|++|++++|........-+|+|+|.+++.|.-+-.+...   .
T Consensus       136 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vl  214 (621)
T CHL00094        136 TQAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVL  214 (621)
T ss_pred             CeEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEE
Confidence            35888999999999998887764 5779999999999999998887322223467999999999988766433211   1


Q ss_pred             cCeEEecccHHHHHHHHHHHHhc
Q 006876           98 RGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        98 ~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      ....-.++||.++++.|.+++..
T Consensus       215 a~~gd~~lGG~d~D~~l~~~~~~  237 (621)
T CHL00094        215 STSGDTHLGGDDFDKKIVNWLIK  237 (621)
T ss_pred             EEecCCCcChHHHHHHHHHHHHH
Confidence            12234689999999999887753

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=98.28  E-value=1.8e-05  Score=91.21  Aligned_cols=100  Identities=16%  Similarity=-0.010  Sum_probs=74.1

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeee--ecCeec-c
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF--VEGEPV-Y   97 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV--~dG~~i-~   97 (627)
                      ..+|||.|...+...|+.+.+. .+.-|++-+.+++.|++|++++|.......+-+|+|+|.+++.|.-+  .+|..- .
T Consensus       142 ~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~  220 (595)
T PRK01433        142 TKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVI  220 (595)
T ss_pred             ceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEE
Confidence            4699999999999999888877 56779999999999999999887322123457999999999877555  244221 1


Q ss_pred             cCeEEecccHHHHHHHHHHHHhcc
Q 006876           98 RGSCRTNIGGYHITDYLKQLLSLK  121 (627)
Q Consensus        98 ~a~~rl~iGG~~lt~yL~~lL~~r  121 (627)
                      ....-..+||.+++..|.+.+..+
T Consensus       221 at~gd~~lGG~d~D~~l~~~~~~~  244 (595)
T PRK01433        221 ATNGDNMLGGNDIDVVITQYLCNK  244 (595)
T ss_pred             EEcCCcccChHHHHHHHHHHHHHh
Confidence            111224699999999998877653

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=98.24  E-value=3e-05  Score=90.52  Aligned_cols=99  Identities=12%  Similarity=-0.051  Sum_probs=75.5

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeee--cCeec-c
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEPV-Y   97 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~--dG~~i-~   97 (627)
                      ..++||.|.+.....|+.+.+. .+.-|++-+.+++.|++|++++|.......+-+|+|+|.+++.|.-+-  +|... .
T Consensus       175 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~  253 (663)
T PTZ00400        175 KQAVITVPAYFNDSQRQATKDA-GKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVK  253 (663)
T ss_pred             ceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEE
Confidence            4699999999999999888775 556799999999999999998883222235679999999999886552  44332 1


Q ss_pred             cCeEEecccHHHHHHHHHHHHhc
Q 006876           98 RGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        98 ~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      ....-.++||.+++..|.+++..
T Consensus       254 a~~gd~~LGG~d~D~~l~~~l~~  276 (663)
T PTZ00400        254 ATNGNTSLGGEDFDQRILNYLIA  276 (663)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHH
Confidence            12233589999999999887754

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=98.23  E-value=1.1e-05  Score=89.28  Aligned_cols=101  Identities=11%  Similarity=-0.008  Sum_probs=76.6

Q ss_pred             ChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHH
Q 006876           32 PVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHIT  111 (627)
Q Consensus        32 p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt  111 (627)
                      +......+.. +++.-++.-..++.+++++.++...........+|||+|+++|.++-+.+|.+..  ...+++||.++|
T Consensus       164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~--~~~i~~GG~~it  240 (420)
T PRK09472        164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRH--TKVIPYAGNVVT  240 (420)
T ss_pred             chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEE--EeeeechHHHHH
Confidence            3444455555 5688888888888999998888752211134579999999999999999998774  678999999999


Q ss_pred             HHHHHHHhccCCCCCCcccHHHHHHHHHhcccc
Q 006876          112 DYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYI  144 (627)
Q Consensus       112 ~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyV  144 (627)
                      +.|...|.         ++...++.+|..+...
T Consensus       241 ~dIa~~l~---------i~~~~AE~lK~~~g~~  264 (420)
T PRK09472        241 SDIAYAFG---------TPPSDAEAIKVRHGCA  264 (420)
T ss_pred             HHHHHHhC---------cCHHHHHHHHHhccee
Confidence            99876552         3668899999886643

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=98.21  E-value=1.7e-05  Score=91.53  Aligned_cols=99  Identities=14%  Similarity=0.012  Sum_probs=73.1

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccC-ccCcceEEEecCCCceeeeeee--cCee-c
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYG-ICNKDGLAICPGFSTTHVIPFV--EGEP-V   96 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~-~~~~tGLVVDiG~~~T~IvPV~--dG~~-i   96 (627)
                      ..++||.|.......|+.+.+. .+.-|++-+.+++.+++|++++|... ....+-+|+|+|.+++.|.-+-  +|.. +
T Consensus       131 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v  209 (595)
T TIGR02350       131 TEAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV  209 (595)
T ss_pred             CeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence            3589999999999999988775 55679999999999999888876221 2245689999999999876553  2221 1


Q ss_pred             ccCeEEecccHHHHHHHHHHHHhc
Q 006876           97 YRGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        97 ~~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      .....-.++||.+++..|.+++..
T Consensus       210 ~~~~gd~~lGG~d~D~~l~~~~~~  233 (595)
T TIGR02350       210 LSTAGDTHLGGDDFDQRIIDWLAD  233 (595)
T ss_pred             EEecCCcccCchhHHHHHHHHHHH
Confidence            111223579999999999887753

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=98.21  E-value=2.1e-05  Score=91.35  Aligned_cols=99  Identities=14%  Similarity=-0.007  Sum_probs=73.4

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecC--ee-cc
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEG--EP-VY   97 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG--~~-i~   97 (627)
                      ..++||.|...+...|+.+.+. .+..|++-+.+++.|++|++++|.......+-+|+|+|.+++.|.-+--+  .. +.
T Consensus       134 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vl  212 (627)
T PRK00290        134 TEAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVL  212 (627)
T ss_pred             ceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence            4699999999999999888765 45679999999999999888887321124678999999999987655332  11 11


Q ss_pred             cCeEEecccHHHHHHHHHHHHhc
Q 006876           98 RGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        98 ~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      ....-.++||.+++..|.+++..
T Consensus       213 a~~gd~~lGG~d~D~~l~~~~~~  235 (627)
T PRK00290        213 STNGDTHLGGDDFDQRIIDYLAD  235 (627)
T ss_pred             EecCCCCcChHHHHHHHHHHHHH
Confidence            11223579999999999887653

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=98.19  E-value=1.2e-05  Score=93.02  Aligned_cols=100  Identities=11%  Similarity=-0.039  Sum_probs=74.0

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeee--cCee-cc
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEP-VY   97 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~--dG~~-i~   97 (627)
                      ..++||.|.......|+.+.+. .+..|++-+.+++.|++|++++|.......+-+|+|+|.+++.|..+-  .|.. +.
T Consensus       150 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evl  228 (616)
T PRK05183        150 DGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVL  228 (616)
T ss_pred             ceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEE
Confidence            4699999999999999888766 677899999999999999887762211234578999999999876553  2321 11


Q ss_pred             cCeEEecccHHHHHHHHHHHHhcc
Q 006876           98 RGSCRTNIGGYHITDYLKQLLSLK  121 (627)
Q Consensus        98 ~a~~rl~iGG~~lt~yL~~lL~~r  121 (627)
                      ....-..+||.+++..|.+.+..+
T Consensus       229 at~gd~~lGG~d~D~~l~~~~~~~  252 (616)
T PRK05183        229 ATGGDSALGGDDFDHLLADWILEQ  252 (616)
T ss_pred             EecCCCCcCHHHHHHHHHHHHHHH
Confidence            112235799999999998877643

>PRK13410 molecular chaperone DnaK; Provisional

Probab=98.17  E-value=2.1e-05  Score=91.75  Aligned_cols=99  Identities=15%  Similarity=0.005  Sum_probs=73.7

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeee--cCee-cc
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEP-VY   97 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~--dG~~-i~   97 (627)
                      ..+|||.|...+...|+.+.+.. +.-|+.-+.+++.+++|++++|.......+-+|+|+|++++.|.-+-  +|.. +.
T Consensus       136 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~  214 (668)
T PRK13410        136 TGAVITVPAYFNDSQRQATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK  214 (668)
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence            35999999999999998877764 67799999999999999888873222235689999999999876553  3321 11


Q ss_pred             cCeEEecccHHHHHHHHHHHHhc
Q 006876           98 RGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        98 ~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      ....-.++||.+++..|.++|..
T Consensus       215 at~gd~~lGG~dfD~~l~~~l~~  237 (668)
T PRK13410        215 ATSGDTQLGGNDFDKRIVDWLAE  237 (668)
T ss_pred             EeecCCCCChhHHHHHHHHHHHH
Confidence            11223579999999999877754

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=98.06  E-value=5.3e-05  Score=88.28  Aligned_cols=99  Identities=10%  Similarity=-0.062  Sum_probs=73.6

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeee--cCeeccc
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEPVYR   98 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~--dG~~i~~   98 (627)
                      ..+|||.|.......|+.+.+. .+.-|+.-+.+++.|++|++++|.......+-+|+|+|.+++.|.-+-  +|..--.
T Consensus       161 ~~aVITVPayF~~~qR~at~~A-a~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~  239 (657)
T PTZ00186        161 SNAVVTCPAYFNDAQRQATKDA-GTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVK  239 (657)
T ss_pred             ceEEEEECCCCChHHHHHHHHH-HHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence            4699999999999999887765 567799989999999999988873211235679999999999876553  4533211


Q ss_pred             C-eEEecccHHHHHHHHHHHHhc
Q 006876           99 G-SCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        99 a-~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      + ..-.++||.+++..|.+.+..
T Consensus       240 at~Gd~~LGG~DfD~~l~~~~~~  262 (657)
T PTZ00186        240 ATNGDTHLGGEDFDLALSDYILE  262 (657)
T ss_pred             EecCCCCCCchhHHHHHHHHHHH
Confidence            1 223589999999998877653

>PRK13411 molecular chaperone DnaK; Provisional

Probab=98.03  E-value=5.6e-05  Score=88.18  Aligned_cols=99  Identities=13%  Similarity=-0.015  Sum_probs=72.3

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccC-ccCcceEEEecCCCceeeeeee--cCee-c
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYG-ICNKDGLAICPGFSTTHVIPFV--EGEP-V   96 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~-~~~~tGLVVDiG~~~T~IvPV~--dG~~-i   96 (627)
                      ..++||.|.......|+.+.+. .+.-|+.-+.+++.|++|++++|... ....+-+|+|+|.+++.|.-+-  +|.. +
T Consensus       134 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V  212 (653)
T PRK13411        134 TQAVITVPAYFTDAQRQATKDA-GTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEV  212 (653)
T ss_pred             ceEEEEECCCCCcHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEE
Confidence            4599999999999999988775 55679999999999999998887211 1134579999999999876442  2221 1


Q ss_pred             ccCeEEecccHHHHHHHHHHHHhc
Q 006876           97 YRGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        97 ~~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      .....-..+||.++++.|.++|..
T Consensus       213 ~at~gd~~LGG~dfD~~l~~~l~~  236 (653)
T PRK13411        213 KATAGNNHLGGDDFDNCIVDWLVE  236 (653)
T ss_pred             EEEecCCCcCHHHHHHHHHHHHHH
Confidence            111222479999999999887653

>PLN03184 chloroplast Hsp70; Provisional

Probab=98.02  E-value=9.5e-05  Score=86.55  Aligned_cols=99  Identities=16%  Similarity=0.024  Sum_probs=73.7

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecC--ee-cc
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEG--EP-VY   97 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG--~~-i~   97 (627)
                      ..++||.|.......|+.+.+. .+.-|+.-+.+++.+++|++++|........-+|+|+|.+++.|.-+--+  .. +.
T Consensus       173 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVl  251 (673)
T PLN03184        173 TKAVITVPAYFNDSQRTATKDA-GRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVL  251 (673)
T ss_pred             CeEEEEECCCCCHHHHHHHHHH-HHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEE
Confidence            4699999999999999888765 56779999999999999988887321123467999999999987655322  21 11


Q ss_pred             cCeEEecccHHHHHHHHHHHHhc
Q 006876           98 RGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        98 ~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      ....-.++||.++++.|.+++..
T Consensus       252 a~~gd~~LGG~dfD~~L~~~~~~  274 (673)
T PLN03184        252 STSGDTHLGGDDFDKRIVDWLAS  274 (673)
T ss_pred             EecCCCccCHHHHHHHHHHHHHH
Confidence            11223589999999999887753

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=97.95  E-value=0.0001  Score=86.06  Aligned_cols=99  Identities=13%  Similarity=0.017  Sum_probs=73.0

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccC--ccCcceEEEecCCCceeeeeee--cCeec
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYG--ICNKDGLAICPGFSTTHVIPFV--EGEPV   96 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~--~~~~tGLVVDiG~~~T~IvPV~--dG~~i   96 (627)
                      ..++||.|.+.....|+.+.+. .+..|+.-+.+++.+++|++++|...  ....+-+|+|+|++++.|.-+-  +|..-
T Consensus       141 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~  219 (653)
T PTZ00009        141 KDAVVTVPAYFNDSQRQATKDA-GTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFE  219 (653)
T ss_pred             ceeEEEeCCCCCHHHHHHHHHH-HHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEE
Confidence            4699999999999999887765 56789999999999999888876211  1134689999999999875542  34321


Q ss_pred             ccC-eEEecccHHHHHHHHHHHHhc
Q 006876           97 YRG-SCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        97 ~~a-~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      -.+ ..-.++||.+++..|.+++..
T Consensus       220 v~a~~gd~~lGG~d~D~~l~~~~~~  244 (653)
T PTZ00009        220 VKATAGDTHLGGEDFDNRLVEFCVQ  244 (653)
T ss_pred             EEEecCCCCCChHHHHHHHHHHHHH
Confidence            111 123579999999999887653

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=96.33  E-value=0.013  Score=67.47  Aligned_cols=99  Identities=17%  Similarity=0.059  Sum_probs=69.1

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccC-ccCcceEEEecCCCceeeeee--ecCeecc
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYG-ICNKDGLAICPGFSTTHVIPF--VEGEPVY   97 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~-~~~~tGLVVDiG~~~T~IvPV--~dG~~i~   97 (627)
                      ..++||.|...+...|+.+.+. .+.-|++-+.+++.+.+|+++++... ....+-+|||+|++++.|.-+  .+|..--
T Consensus       136 ~~~vitVPa~~~~~qr~~~~~A-a~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v  214 (602)
T PF00012_consen  136 TDVVITVPAYFTDEQRQALRDA-AELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV  214 (602)
T ss_dssp             EEEEEEE-TT--HHHHHHHHHH-HHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred             ccceeeechhhhhhhhhccccc-ccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence            4699999999999999888876 45678888889999988877665111 113578999999999876655  3443321


Q ss_pred             -cCeEEecccHHHHHHHHHHHHhc
Q 006876           98 -RGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        98 -~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                       .......+||.+++..|.++|..
T Consensus       215 ~~~~~~~~lGG~~~D~~l~~~~~~  238 (602)
T PF00012_consen  215 LATAGDNNLGGRDFDEALAEYLLE  238 (602)
T ss_dssp             EEEEEETTCSHHHHHHHHHHHHHH
T ss_pred             cccccccccccceecceeeccccc
Confidence             22334689999999999887754

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=96.13  E-value=0.02  Score=63.48  Aligned_cols=93  Identities=18%  Similarity=0.115  Sum_probs=70.8

Q ss_pred             HHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhcc
Q 006876           42 LLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLK  121 (627)
Q Consensus        42 vLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r  121 (627)
                      -++|.-++.-..++.++++|.++.=...-....+++||+|+++|.|.-+.+|.+..  +..+|+||.++|.=+...|.. 
T Consensus       172 k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~--~~~ipvgG~~vT~DIa~~l~t-  248 (418)
T COG0849         172 KCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRY--TGVIPVGGDHVTKDIAKGLKT-  248 (418)
T ss_pred             HHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEE--EeeEeeCccHHHHHHHHHhCC-
Confidence            34566666666666677777666531112245789999999999999999999987  567999999999999887643 


Q ss_pred             CCCCCCcccHHHHHHHHHhccccc
Q 006876          122 HPQHMTKLTWEKVEDLKMEHCYIA  145 (627)
Q Consensus       122 ~~~~~~~~~~~~ve~IKE~~CyVa  145 (627)
                              +.+.+++||.+|....
T Consensus       249 --------~~~~AE~iK~~~g~a~  264 (418)
T COG0849         249 --------PFEEAERIKIKYGSAL  264 (418)
T ss_pred             --------CHHHHHHHHHHcCccc
Confidence                    6788999999976543

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.035  Score=64.13  Aligned_cols=101  Identities=15%  Similarity=0.008  Sum_probs=77.7

Q ss_pred             cccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeec--C-eec
Q 006876           20 DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVE--G-EPV   96 (627)
Q Consensus        20 d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~d--G-~~i   96 (627)
                      -..++||.|.+.....|..+.+. ....|++-+.+++.|++|+|++|.......+=+|+|+|.+++.|.-|--  | +.+
T Consensus       120 v~~~VItVPayF~d~qR~at~~A-~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev  198 (579)
T COG0443         120 VTDAVITVPAYFNDAQRQATKDA-ARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEV  198 (579)
T ss_pred             cceEEEEeCCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEE
Confidence            45699999999999998777766 5578999999999999999999943333457899999999997766633  3 122


Q ss_pred             ccCeEEecccHHHHHHHHHHHHhcc
Q 006876           97 YRGSCRTNIGGYHITDYLKQLLSLK  121 (627)
Q Consensus        97 ~~a~~rl~iGG~~lt~yL~~lL~~r  121 (627)
                      .....-..+||.+++..|...+...
T Consensus       199 ~at~gd~~LGGddfD~~l~~~~~~~  223 (579)
T COG0443         199 LATGGDNHLGGDDFDNALIDYLVME  223 (579)
T ss_pred             eecCCCcccCchhHHHHHHHHHHHH
Confidence            2334457899999998887776543

>TIGR03739 PRTRC_D PRTRC system protein D

Probab=95.86  E-value=0.021  Score=60.95  Aligned_cols=100  Identities=16%  Similarity=-0.002  Sum_probs=74.2

Q ss_pred             EEEEeCCC-CChHHHHHHHHHHhhh--------cCCCeEEeehhhhhhhhhcccc----CccCcceEEEecCCCceeeee
Q 006876           23 VLITECVC-NPVHSRSKMAELLFET--------YGVPSVAFGVDAAFSYKYNQQY----GICNKDGLAICPGFSTTHVIP   89 (627)
Q Consensus        23 VLLTEp~~-~p~~~Rekl~EvLFE~--------f~vpsv~~~~~a~lslya~G~~----~~~~~tGLVVDiG~~~T~IvP   89 (627)
                      .|+|-=|. .-...++.+.+.+-..        +.|..|.+.+|++-|++..-..    .....+.+|||+|+.+|.++.
T Consensus       104 ~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~  183 (320)
T TIGR03739       104 QLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLV  183 (320)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeeh
Confidence            35555444 3456778887776543        5788899999998777654100    012456799999999999998


Q ss_pred             eecCeecccCeEEecccHHHHHHHHHHHHhccC
Q 006876           90 FVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKH  122 (627)
Q Consensus        90 V~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~  122 (627)
                      +-++.+....+..++.|-..+.+-+.+.|..++
T Consensus       184 ~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~  216 (320)
T TIGR03739       184 ARGMRLVQKRSGSVNGGMSDIYRLLAAEISKDI  216 (320)
T ss_pred             ccCCEEcccccCCchhHHHHHHHHHHHHHHhhc
Confidence            888888888888899999999999999987653

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.

>PRK13917 plasmid segregation protein ParM; Provisional

Probab=95.28  E-value=0.043  Score=59.40  Aligned_cols=91  Identities=14%  Similarity=-0.071  Sum_probs=67.6

Q ss_pred             cCCCeEEeehhhhhhhhhccccC--------ccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHH
Q 006876           47 YGVPSVAFGVDAAFSYKYNQQYG--------ICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL  118 (627)
Q Consensus        47 f~vpsv~~~~~a~lslya~G~~~--------~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL  118 (627)
                      ..|..|.+.+|++.++|......        -.....+|||+|+.+|.++-+.+|.+....+..++.|+.++-+.+.+.|
T Consensus       151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i  230 (344)
T PRK13917        151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHI  230 (344)
T ss_pred             EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHH
Confidence            45667888999988887553110        0123469999999999999999999988888889999999999999999


Q ss_pred             hccCCCCCCcccHHHHHHHHH
Q 006876          119 SLKHPQHMTKLTWEKVEDLKM  139 (627)
Q Consensus       119 ~~r~~~~~~~~~~~~ve~IKE  139 (627)
                      ..+.+..  .++...++++.+
T Consensus       231 ~~~~~~~--~~~~~~ie~~l~  249 (344)
T PRK13917        231 SKKEEGA--SITPYMLEKGLE  249 (344)
T ss_pred             HhhCCCC--CCCHHHHHHHHH
Confidence            6544332  345566666643

>PRK11678 putative chaperone; Provisional

Probab=95.26  E-value=0.17  Score=56.91  Aligned_cols=93  Identities=18%  Similarity=0.078  Sum_probs=65.1

Q ss_pred             ccEEEEeCCCCC-----hHHHHHH--HHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecC
Q 006876           21 HPVLITECVCNP-----VHSRSKM--AELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEG   93 (627)
Q Consensus        21 ~pVLLTEp~~~p-----~~~Rekl--~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG   93 (627)
                      ..+|||.|....     ..+|...  +.-..+.-|++.+.+++.|++|.+++|.......+-+|+|+|.+++.+.-|--+
T Consensus       150 ~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~  229 (450)
T PRK11678        150 TQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMG  229 (450)
T ss_pred             CcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEec
Confidence            459999998754     5555432  344467789999999999999999887321224568999999999877555221


Q ss_pred             -----------eecccCeEEecccHHHHHHHHH
Q 006876           94 -----------EPVYRGSCRTNIGGYHITDYLK  115 (627)
Q Consensus        94 -----------~~i~~a~~rl~iGG~~lt~yL~  115 (627)
                                 .++..+.  ..+||.+++..|.
T Consensus       230 ~~~~~~~~r~~~vla~~G--~~lGG~DfD~~L~  260 (450)
T PRK11678        230 PSWRGRADRSASLLGHSG--QRIGGNDLDIALA  260 (450)
T ss_pred             CcccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence                       1222222  3699999999985

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=94.99  E-value=0.22  Score=53.31  Aligned_cols=107  Identities=12%  Similarity=0.084  Sum_probs=74.0

Q ss_pred             cEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhh--hhhh-----ccccCccCc-ceEEEecCCCceeeeeeecC
Q 006876           22 PVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF--SYKY-----NQQYGICNK-DGLAICPGFSTTHVIPFVEG   93 (627)
Q Consensus        22 pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~l--slya-----~G~~~~~~~-tGLVVDiG~~~T~IvPV~dG   93 (627)
                      .|+++-.   |+...+.+.++ |+..|+.-..+..++++  -++.     .. ...... +.++||+|++.|+++-+.+|
T Consensus       134 ~v~v~a~---~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~-~~~~~~~~~~lvdiG~~~t~l~i~~~g  208 (348)
T TIGR01175       134 QVLLAAT---RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLA-SRTYRLTDAALVDIGATSSTLNLLHPG  208 (348)
T ss_pred             EEEEEEe---cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCc-cccccCceEEEEEECCCcEEEEEEECC
Confidence            4555533   77777788777 66667665444444433  3332     11 001123 48999999999999999999


Q ss_pred             eecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcccc
Q 006876           94 EPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYI  144 (627)
Q Consensus        94 ~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyV  144 (627)
                      .++.  ++.+++||.++|+-+.+.+.         ++.+.++.+|....+.
T Consensus       209 ~~~~--~r~i~~G~~~i~~~i~~~~~---------~~~~~Ae~~k~~~~~~  248 (348)
T TIGR01175       209 RMLF--TREVPFGTRQLTSELSRAYG---------LNPEEAGEAKQQGGLP  248 (348)
T ss_pred             eEEE--EEEeechHHHHHHHHHHHcC---------CCHHHHHHHHhcCCCC
Confidence            9887  68899999999998876542         3677888999887653

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=91.00  E-value=1.3  Score=47.66  Aligned_cols=108  Identities=28%  Similarity=0.347  Sum_probs=67.7

Q ss_pred             CcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehh--hhhhhhhccc-c---CccCcceEEEecCCCceeeeeeec
Q 006876           19 IDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVD--AAFSYKYNQQ-Y---GICNKDGLAICPGFSTTHVIPFVE   92 (627)
Q Consensus        19 ~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~--a~lslya~G~-~---~~~~~tGLVVDiG~~~T~IvPV~d   92 (627)
                      ....|+++-.   |+..-+...++ |+..|+.-..+-.+  +++-+|.... .   .....+-+|||+|+..|+++-+.+
T Consensus       124 ~~~~Vll~Aa---~k~~v~~~~~~-~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~  199 (340)
T PF11104_consen  124 EKMEVLLVAA---PKEIVESYVEL-FEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQN  199 (340)
T ss_dssp             SEEEEEEEEE---EHHHHHHHHHH-HHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEET
T ss_pred             CceEEEEEEE---cHHHHHHHHHH-HHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEEC
Confidence            3466777665   56666666655 66777765444333  4444443310 0   001234589999999999999999


Q ss_pred             CeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc
Q 006876           93 GEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEH  141 (627)
Q Consensus        93 G~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~  141 (627)
                      |.++.  .+.+++||.++++-+.+.+.         ++....+.+|...
T Consensus       200 g~~~f--~R~i~~G~~~l~~~i~~~~~---------i~~~~Ae~~k~~~  237 (340)
T PF11104_consen  200 GKPIF--SRSIPIGGNDLTEAIARELG---------IDFEEAEELKRSG  237 (340)
T ss_dssp             TEEEE--EEEES-SHHHHHHHHHHHTT-----------HHHHHHHHHHT
T ss_pred             CEEEE--EEEEeeCHHHHHHHHHHhcC---------CCHHHHHHHHhcC
Confidence            99886  67899999999999987642         3566777777764

>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []

Probab=90.30  E-value=0.51  Score=50.49  Aligned_cols=114  Identities=16%  Similarity=0.063  Sum_probs=68.1

Q ss_pred             HHHHHhhcCCCCCCCcccEEEEeCCC---CCh--HHHHHHH----HHHh-------hhcCCCeEEeehhhhhhhhhcccc
Q 006876            5 LDFAFDRLGANGSEIDHPVLITECVC---NPV--HSRSKMA----ELLF-------ETYGVPSVAFGVDAAFSYKYNQQY   68 (627)
Q Consensus         5 wd~if~~L~v~~~p~d~pVLLTEp~~---~p~--~~Rekl~----EvLF-------E~f~vpsv~~~~~a~lslya~G~~   68 (627)
                      .+|++.+-|+.  +.+..|+++-|.-   ...  ..++.+.    .++.       ..+.+..|.+.++++.|+|..-..
T Consensus        82 v~haL~~~G~~--~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~  159 (318)
T PF06406_consen   82 VHHALLKAGLE--PQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD  159 (318)
T ss_dssp             HHHHHHHHS----SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred             HHHHHHHcCCC--CCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence            46677666777  6777788887732   221  1222232    1222       145577899999999888865311


Q ss_pred             CccCcceEEEecCCCceeeeeeecCeecccCeE-EecccHHHHHHHHHHHHhc
Q 006876           69 GICNKDGLAICPGFSTTHVIPFVEGEPVYRGSC-RTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        69 ~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~-rl~iGG~~lt~yL~~lL~~  120 (627)
                      -....+.+|||+|+.+|.++-|.++.+....+. ..++|-..+.+.+.+.|..
T Consensus       160 ~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~  212 (318)
T PF06406_consen  160 LDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS  212 (318)
T ss_dssp             S-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred             hcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence            011356899999999999998877765544443 4578989999999998875

They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.

>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=89.30  E-value=0.96  Score=48.49  Aligned_cols=68  Identities=24%  Similarity=0.316  Sum_probs=55.1

Q ss_pred             eEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHH
Q 006876           75 GLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQL  154 (627)
Q Consensus        75 GLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~  154 (627)
                      .+|+|+|+..|.+.-+++|+++.  .+..++||+++|.-+.+..+.         +.+..+++|... -.+.||..+.-.
T Consensus       195 vav~~Igat~s~l~vi~~gk~ly--~r~~~~g~~Qlt~~i~r~~~L---------~~~~a~~~k~~~-~~P~~y~~~vl~  262 (354)
T COG4972         195 VAVFDIGATSSELLVIQDGKILY--TREVPVGTDQLTQEIQRAYSL---------TEEKAEEIKRGG-TLPTDYGSEVLR  262 (354)
T ss_pred             heeeeecccceEEEEEECCeeee--EeeccCcHHHHHHHHHHHhCC---------ChhHhHHHHhCC-CCCCchhHHHHH
Confidence            35999999999999999999998  578999999999999887643         566778888764 346688877643

>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]

Probab=88.50  E-value=0.19  Score=50.29  Aligned_cols=64  Identities=22%  Similarity=0.229  Sum_probs=54.7

Q ss_pred             HhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHH
Q 006876           43 LFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDY  113 (627)
Q Consensus        43 LFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~y  113 (627)
                      +.|.-+...++....+.++.+-.+     .+.|.|||+|.++|-|.-+-.|.+++.+  --+.||.|+|-.
T Consensus       115 ViESAGlevl~vlDEPTAaa~vL~-----l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmtLv  178 (277)
T COG4820         115 VIESAGLEVLHVLDEPTAAADVLQ-----LDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMTLV  178 (277)
T ss_pred             eecccCceeeeecCCchhHHHHhc-----cCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEEEE
Confidence            467788888999999999999888     8999999999999999999999998854  357899887543

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=85.54  E-value=0.42  Score=49.91  Aligned_cols=50  Identities=24%  Similarity=0.377  Sum_probs=40.8

Q ss_pred             CCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeecccccc
Q 006876          543 SSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA  595 (627)
Q Consensus       543 ~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilA  595 (627)
                      .+|+++||.+.-+|+...|+++|...   ...+.|..+++|++..-+||+++|
T Consensus       213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~  262 (262)
T TIGR02261       213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG  262 (262)
T ss_pred             CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence            47999999999999999999998532   124556667899999999998875

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional

Probab=84.40  E-value=1.2  Score=50.18  Aligned_cols=39  Identities=28%  Similarity=0.286  Sum_probs=34.3

Q ss_pred             CcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHH
Q 006876           72 NKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITD  112 (627)
Q Consensus        72 ~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~  112 (627)
                      ....++||+|.++|++.-+.+|.++.  ...+++||+++|.
T Consensus       145 e~gVa~IDIGgGTT~iaVf~~G~l~~--T~~l~vGG~~IT~  183 (475)
T PRK10719        145 NTRVLNIDIGGGTANYALFDAGKVID--TACLNVGGRLIET  183 (475)
T ss_pred             cCceEEEEeCCCceEEEEEECCEEEE--EEEEecccceEEE
Confidence            45689999999999999999999887  5679999999864

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=84.28  E-value=0.41  Score=52.79  Aligned_cols=49  Identities=22%  Similarity=0.326  Sum_probs=42.6

Q ss_pred             hccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccC
Q 006876          540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT  596 (627)
Q Consensus       540 ~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAs  596 (627)
                      .+-..|+++||.+..+|+...|.+.|.        .+|+.+++|++..-+||+++|+
T Consensus       354 ~i~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~  402 (404)
T TIGR03286       354 DVREPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS  402 (404)
T ss_pred             CCCCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence            455669999999999999999998874        4677799999999999999985

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=83.79  E-value=0.66  Score=51.10  Aligned_cols=53  Identities=21%  Similarity=0.222  Sum_probs=43.6

Q ss_pred             hccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeecccccc
Q 006876          540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA  595 (627)
Q Consensus       540 ~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilA  595 (627)
                      .+-..|+++||.+.-+||...|.+.|..-.+   ..+|+.+++|++..-+||+++|
T Consensus       380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a  432 (432)
T TIGR02259       380 GITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA  432 (432)
T ss_pred             CCCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence            3457899999999999999999998864322   2467778999999999999875

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=82.47  E-value=0.47  Score=50.32  Aligned_cols=49  Identities=24%  Similarity=0.466  Sum_probs=40.7

Q ss_pred             hccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEe-eCCCCccceeeccccccC
Q 006876          540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVV-RALDPVLDAWRGASVYAT  596 (627)
Q Consensus       540 ~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~-~~~~~~~saW~GgsilAs  596 (627)
                      .+-..|+++||.+.-||+...|++.|..        .|. .+++|++..-+||+++|.
T Consensus       238 ~i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A~  287 (293)
T TIGR03192       238 GVEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFGY  287 (293)
T ss_pred             CCCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHHH
Confidence            4667899999999999999999998842        333 366899999999999984

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>PRK13317 pantothenate kinase; Provisional

Probab=82.36  E-value=0.57  Score=49.36  Aligned_cols=73  Identities=18%  Similarity=0.162  Sum_probs=51.9

Q ss_pred             CCccHHHHHhcccCCCCChhhHHhccCCeEEec-CCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeecccccc
Q 006876          517 VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTG-GCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA  595 (627)
Q Consensus       517 ~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtG-G~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilA  595 (627)
                      .||..+|.+.|..+ +|-. .|..-..+|+++| |.+..|++.++|.+.+.-     ..++++.+++++|..-+||++++
T Consensus       200 asl~~~v~~~I~~l-A~~~-ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a  272 (277)
T PRK13317        200 AGVIGLVGEVITTL-SIQA-AREKNIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLA  272 (277)
T ss_pred             HHHHHHHHHHHHHH-HHHH-HHhcCCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHh
Confidence            35666666666542 1111 1323348999999 799999999999987653     23577888999999999999876


Q ss_pred             C
Q 006876          596 T  596 (627)
Q Consensus       596 s  596 (627)
                      .
T Consensus       273 ~  273 (277)
T PRK13317        273 T  273 (277)
T ss_pred             h
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	627
1yvn_A	375	The Yeast Actin Val 159 Asn Mutant Complex With Hum		4e-17
1yag_A	375	Structure Of The Yeast Actin-human Gelsolin Segment		5e-17
1dej_A	375	Crystal Structure Of A DictyosteliumTETRAHYMENA CHI		5e-17
3b63_A	365	Actin Filament Model In The Extended Form Of Acroms		5e-17
1c0g_A	375	Crystal Structure Of 1:1 Complex Between Gelsolin S		5e-17
3b63_C	365	Actin Filament Model In The Extended Form Of Acroms		5e-17
3a5l_C	375	Crystal Structure Of A Dictyostelium P109a Mg2+-Act		5e-17
1c0f_A	368	Crystal Structure Of Dictyostelium Caatp-Actin In C		5e-17
2w49_D	372	Isometrically Contracting Insect Asynchronous Fligh		6e-17
3a5m_C	375	Crystal Structure Of A Dictyostelium P109i Mg2+-Act		6e-17
3chw_A	375	Complex Of Dictyostelium Discoideum Actin With Prof		6e-17
2hf3_A	374	Crystal Structure Of Monomeric Actin In The Adp Bou		6e-17
3ci5_A	375	Complex Of Phosphorylated Dictyostelium Discoideum		6e-17
3eks_A	375	Crystal Structure Of Monomeric Actin Bound To Cytoc		7e-17
1t44_A	370	Structural Basis Of Actin Sequestration By Thymosin		7e-17
1nlv_A	375	Crystal Structure Of Dictyostelium Discoideum Actin		7e-17
3mn5_A	359	Structures Of Actin-Bound Wh2 Domains Of Spire And		7e-17
1kxp_A	375	Crystal Structure Of Human Vitamin D-binding Protei		7e-17
1atn_A	373	Atomic Structure Of The Actin:dnase I Complex Lengt		7e-17
2gwj_A	371	Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form		7e-17
1lcu_A	371	Polylysine Induces An Antiparallel Actin Dimer That		7e-17
3g37_O	376	Cryo-Em Structure Of Actin Filament In The Presence		7e-17
1qz5_A	375	Structure Of Rabbit Actin In Complex With Kabiramid		7e-17
4b1v_A	376	Structure Of The Phactr1 Rpel-N Domain Bound To G-A		8e-17
1ijj_A	377	The X-Ray Crystal Structure Of The Complex Between		8e-17
1eqy_A	377	Complex Between Rabbit Muscle Alpha-Actin: Human Ge		8e-17
3byh_A	374	Model Of Actin-Fimbrin Abd2 Complex Length = 374		8e-17
3w3d_A	374	Crystal Structure Of Smooth Muscle G Actin Dnase I		9e-17
2oan_A	375	Structure Of Oxidized Beta-Actin Length = 375		9e-17
3u4l_A	375	Cryocooled Bovine Profilin:actin Crystal Structure		9e-17
2btf_A	375	The Structure Of Crystalline Profilin-Beta-Actin Le		9e-17
3m6g_A	371	Crystal Structure Of Actin In Complex With Lobophor		2e-16
3b63_E	365	Actin Filament Model In The Extended Form Of Acroms		2e-16
3b63_B	364	Actin Filament Model In The Extended Form Of Acroms		3e-16
3b63_L	365	Actin Filament Model In The Extended Form Of Acroms		3e-16
1d4x_A	375	Crystal Structure Of Caenorhabditis Elegans Mg-Atp		5e-16
4efh_A	375	Acanthamoeba Actin Complex With Spir Domain D Lengt		5e-16
3b63_D	357	Actin Filament Model In The Extended Form Of Acroms		1e-15
3b63_F	357	Actin Filament Model In The Extended Form Of Acroms		1e-15
1k8k_B	394	Crystal Structure Of Arp23 COMPLEX Length = 394		5e-10
1k8k_B	394	Crystal Structure Of Arp23 COMPLEX Length = 394		5e-06
2p9k_B	394	Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta		6e-10
2p9k_B	394	Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta		5e-06
3dwl_A	427	Crystal Structure Of Fission Yeast Arp2/3 Complex L		1e-07
1k8k_A	418	Crystal Structure Of Arp23 COMPLEX Length = 418		7e-07
1k8k_A	418	Crystal Structure Of Arp23 COMPLEX Length = 418		7e-06

>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFR PE LF P+ +G++  G+D+ T  SI +    D D+ + L  +I+M+GG  
Sbjct: 248 ITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKC---DVDVRKELYGNIVMSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           +FPG++ER++  I  + P    +K++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 305 MFPGIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDE 364
Query: 613 KG 614
            G
Sbjct: 365 SG 366

>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFR PE LF P+ +G++  G+D+ T  SI +    D D+ + L  +I+M+GG  
Sbjct: 248 ITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKC---DVDVRKELYGNIVMSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           +FPG++ER++  I  + P    +K++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 305 MFPGIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDE 364
Query: 613 KG 614
            G
Sbjct: 365 SG 366

>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L  +++++GG  
Sbjct: 248 ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKC---DVDIRKDLYGNVVLSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           +FPG+++R+   +  + P    IK++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 305 MFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKHEYDE 364
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 365 SGPSIVHR 372

>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFR PE LF P+ +G++  G+D+ T  SI +    D D+ + L  +I+M+GG  
Sbjct: 243 ITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKC---DVDVRKELYGNIVMSGGTT 299
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           +FPG++ER++  I  + P    +K++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 300 MFPGIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDE 359
Query: 613 KG 614
            G
Sbjct: 360 SG 361

>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L  +++++GG  
Sbjct: 248 ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKC---DVDIRKDLYGNVVLSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           +FPG+++R+   +  + P    IK++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 305 MFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKHEYDE 364
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 365 SGPSIVHR 372

>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFR PE LF P+ +G++  G+D+ T  SI +    D D+ + L  +I+M+GG  
Sbjct: 243 ITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKC---DVDVRKELYGNIVMSGGTT 299
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           +FPG++ER++  I  + P    +K++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 300 MFPGIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDE 359
Query: 613 KG 614
            G
Sbjct: 360 SG 361

>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 454 ISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIV-LGVERFRCPEILFRPNWV 512
           I  +L  V   F  + ++  + SA E     P    D Q++ +G ERFRCPE LF+P+++
Sbjct: 212 IKEKLAYVALDFEAEMQTAASSSALEKSYELP----DGQVITIGNERFRCPEALFQPSFL 267
Query: 513 GIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCG 572
           G++  G+ E T  SI +    D D+ + L  +++++GG  +FPG+++R+   +  + P  
Sbjct: 268 GMESAGIHETTYNSIMKC---DVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPST 324
Query: 573 APIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
             IK++   +     W G S+ A+   F Q   S+ +Y E G + + R
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHR 372

>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 454 ISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIV-LGVERFRCPEILFRPNWV 512
           I  +L  V   F  + ++  + SA E     P    D Q++ +G ERFRCPE LF+P+++
Sbjct: 205 IKEKLAYVALDFEAEMQTAASSSALEKSYELP----DGQVITIGNERFRCPEALFQPSFL 260
Query: 513 GIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCG 572
           G++  G+ E T  SI +    D D+ + L  +++++GG  +FPG+++R+   +  + P  
Sbjct: 261 GMESAGIHETTYNSIMKC---DVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPST 317
Query: 573 APIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
             IK++   +     W G S+ A+   F Q   S+ +Y E G + + R
Sbjct: 318 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHR 365

>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 248 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 364
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 365 AGPSIVHR 372

>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 454 ISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIV-LGVERFRCPEILFRPNWV 512
           I  +L  V   F  + ++  + SA E     P    D Q++ +G ERFRCPE LF+P+++
Sbjct: 212 IKEKLAYVALDFEAEMQTAASSSALEKSYELP----DGQVITIGNERFRCPEALFQPSFL 267
Query: 513 GIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCG 572
           G++  G+ E T  SI +    D D+ + L  +++++GG  +FPG+++R+   +  + P  
Sbjct: 268 GMESAGIHETTYNSIMKC---DVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPST 324
Query: 573 APIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
             IK++   +     W G S+ A+   F Q   S+ +Y E G + + R
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHR 372

>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 454 ISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIV-LGVERFRCPEILFRPNWV 512
           I  +L  V   F  + ++  + SA E     P    D Q++ +G ERFRCPE LF+P+++
Sbjct: 212 IKEKLAYVALDFEAEMQTAASSSALEKSYELP----DGQVITIGNERFRCPEALFQPSFL 267
Query: 513 GIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCG 572
           G++  G+ E T  SI +    D D+ + L  +++++GG  +FPG+++R+   +  + P  
Sbjct: 268 GMESAGIHETTYNSIMKC---DVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPST 324
Query: 573 APIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
             IK++   +     W G S+ A+   F Q   S+ +Y E G + + R
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHR 372

>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 468 KQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSI 527
           +QE     S++ + +   L K+   I +G ERFRCPE LF+P+++G++  G+ E T  SI
Sbjct: 223 EQEMATAASSSSLEKSYEL-KDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSI 281
Query: 528 RRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDA 587
            +    D D+ + L ++ +++GG  ++PG+++R++  I  + P    IK++   +     
Sbjct: 282 MKC---DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 338
Query: 588 WRGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
           W G S+ A+   F Q   S+ +Y E G + + R
Sbjct: 339 WIGGSILASLSTFQQMWISKQEYDESGPSIVHR 371

>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 454 ISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIV-LGVERFRCPEILFRPNWV 512
           I  +L  V   F  + ++  + SA E     P    D Q++ +G ERFRCPE LF+P+++
Sbjct: 212 IKEKLAYVALDFEAEMQTAASSSALEKSYELP----DGQVITIGNERFRCPEALFQPSFL 267
Query: 513 GIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCG 572
           G++  G+ E T  SI +    D D+ + L  +++++GG  +FPG+++R+   +  + P  
Sbjct: 268 GMESAGIHETTYNSIMKC---DVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPST 324
Query: 573 APIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
             IK++   +     W G S+ A+   F Q   S+ +Y E G + + R
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHR 372

>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 468 KQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSI 527
           +QE     S++ + +   L K+   I +G ERFRCPE LF+P+++G++  G+ E T  SI
Sbjct: 224 EQEMATAASSSSLEKSYEL-KDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSI 282
Query: 528 RRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDA 587
            +    D D+ + L ++ +++GG  ++PG+++R++  I  + P    IK++   +     
Sbjct: 283 MKC---DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 339
Query: 588 WRGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
           W G S+ A+   F Q   S+ +Y E G + + R
Sbjct: 340 WIGGSILASLSTFQQMWISKQEYDESGPSIVHR 372

>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 243 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 299
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 300 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 359
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 360 AGPSIVHR 367

>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L  +++++GG  
Sbjct: 248 ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKC---DVDIRKDLYGNVVLSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           +FPG+++R+   +  + P    IK++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 305 MFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDE 364
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 365 SGPSIVHR 372

>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 232 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 288
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 289 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 348
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 349 AGPSIVHR 356

>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 248 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 364
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 365 AGPSIVHR 372

>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 249 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 305
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 306 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 365
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 366 AGPSIVHR 373

>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 244 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 300
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 301 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 360
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 361 AGPSIVHR 368

>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 244 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 300
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 301 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 360
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 361 AGPSIVHR 368

>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 249 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 305
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 306 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 365
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 366 AGPSIVHR 373

>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 248 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 364
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 365 AGPSIVHR 372

>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 249 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 305
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 306 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 365
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 366 AGPSIVHR 373

>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 250 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 306
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 307 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 366
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 367 AGPSIVHR 374

>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 250 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 306
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 307 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 366
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 367 AGPSIVHR 374

>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +++GG  
Sbjct: 247 ITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKC---DVDIRKDLYANTVLSGGTT 303
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 304 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 363
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 364 SGPSIVHR 371

>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374

Iteration: 1
 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +++GG  
Sbjct: 247 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVLSGGTT 303
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 304 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 363
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 364 AGPSIVHR 371

>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375

Iteration: 1
 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +++GG  
Sbjct: 248 ITIGNERFRCPEALFQPSFLGMESXGIHETTFNSIMKC---DVDIRKDLYANTVLSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 365 SGPSIVHR 372

>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375

Iteration: 1
 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +++GG  
Sbjct: 248 ITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKC---DVDIRKDLYANTVLSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 365 SGPSIVHR 372

>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375

Iteration: 1
 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +++GG  
Sbjct: 248 ITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKC---DVDIRKDLYANTVLSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 365 SGPSIVHR 372

>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 248 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 364
Query: 613 KG 614
            G
Sbjct: 365 AG 366

>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 243 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 299
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 300 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 359
Query: 613 KG 614
            G
Sbjct: 360 AG 361

>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 242 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 298
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 299 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 358
Query: 613 KG 614
            G
Sbjct: 359 AG 360

>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +++GG  
Sbjct: 243 ITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKC---DVDIRKDLYANTVLSGGTT 299
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 300 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 359
Query: 613 KG 614
            G
Sbjct: 360 SG 361

>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE +F+P+++G++  G+ E +  SI +    D D+ + L ++ +++GG  
Sbjct: 248 ITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKC---DIDIRKDLYANTVLSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 365 SGPSIVHR 372

>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFR PE LF+P+++G++  G+ E T  SI +    D D+ + L  +++++GG  
Sbjct: 248 ITIGNERFRAPEALFQPSFLGMESAGIHETTYNSIMKC---DVDIRKDLYGNVVLSGGTT 304
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           +FPG+++R++  +  + P    IK++   +     W G S+ A+   F Q   S+ +Y E
Sbjct: 305 MFPGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDE 364
Query: 613 KGENWLRR 620
            G + + R
Sbjct: 365 SGPSIVHR 372

>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 241 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 297
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 298 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 357

>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 243 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 299
Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDY 610
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y
Sbjct: 300 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEY 357

>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 5/166 (3%)
Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           M+++ D+ F     N    +  +L+TE   NP  +R K+ E++FETY    V   + A  
Sbjct: 85  MKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVL 144
Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           +  Y Q  G+    G+ +  G   TH+ P  EG  +   + R +I G  IT YL +LL L
Sbjct: 145 TL-YAQ--GLLT--GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLL 199
Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKT 166
           +         +E V  +K + CY+  +   E +L  + T   E  T
Sbjct: 200 RGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYT 245

>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 483 VRPLTKEDFQIV-LGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRL 541
           V   T  D +I+ +G ERF  PE LF+P+ + ++ VG+ E+   +I+     D D     
Sbjct: 241 VESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQ---AADIDTRSEF 297
Query: 542 TSSILMTGGCCLFPGMSERLE 562
              I+++GG  ++PG+  RLE
Sbjct: 298 YKHIVLSGGSTMYPGLPSRLE 318

>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 5/166 (3%)
Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           M+++ D+ F     N    +  +L+TE   NP  +R K+ E++FETY    V   + A  
Sbjct: 85  MKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVL 144
Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           +  Y Q  G+    G+ +  G   TH+ P  EG  +   + R +I G  IT YL +LL L
Sbjct: 145 TL-YAQ--GLLT--GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLL 199
Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKT 166
           +         +E V  +K + CY+  +   E +L  + T   E  T
Sbjct: 200 RGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYT 245

>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 483 VRPLTKEDFQIV-LGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRL 541
           V   T  D +I+ +G ERF  PE LF+P+ + ++ VG+ E+   +I+     D D     
Sbjct: 241 VESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQ---AADIDTRSEF 297
Query: 542 TSSILMTGGCCLFPGMSERLE 562
              I+++GG  ++PG+  RLE
Sbjct: 298 YKHIVLSGGSTMYPGLPSRLE 318

>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 18/153 (11%)
Query: 486 LTKEDFQIVLGVERFRCPEILFRPNWVGIDQVG-LDEMTGVSIRRLPTKDEDLEQRLTSS 544
           +T     I +G ERF  PEI F P     D +  L E+    ++  P    D+ + L  +
Sbjct: 273 ITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPI---DVRKGLYKN 329
Query: 545 ILMTGGCCLFPGMSERLEAGIRMI--------------RPCGAPIKVVRALDPVLDAWRG 590
           I+++GG  LF     RL+  ++ I              +  G  + V+         W G
Sbjct: 330 IVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFG 389
Query: 591 ASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623
            S+ A   +F     ++ DY E G +  RRYQ+
Sbjct: 390 GSLLAQTPEFGSYCHTKADYEEYGASIARRYQI 422

>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 20  DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKY---NQQYGICNKDGL 76
           DH  L+TE   N   +R   AE++FE++ VP +   V A  +      ++Q G     G 
Sbjct: 107 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGT 166
Query: 77  AICPGFSTTHVIPFVEGEPVYRGSC--RTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKV 134
            I  G   THVIP  EG  +  GSC     I G  IT +++QLL  +      + + E  
Sbjct: 167 VIDSGDGVTHVIPVAEGYVI--GSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETA 224
Query: 135 EDLKMEHCYIAPDYFSE 151
           + +K  + Y+ PD   E
Sbjct: 225 KAVKERYSYVCPDLVKE 241

>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 20/155 (12%)
Query: 483 VRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQV-GLDEMTGVSIRRLPTKDEDLEQRL 541
           +  ++K++F I +G ERF  PEI F P +   D    + E+    I+  P    D+ + L
Sbjct: 259 INAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPI---DVRRPL 315
Query: 542 TSSILMTGGCCLFPGMSERLEAGIR----------------MIRPCGAPIKVVRALDPVL 585
             +I+++GG  +F     RL+  ++                 ++P    ++V+       
Sbjct: 316 YKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRY 375
Query: 586 DAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
             W G S+ A+  +F Q   ++ DY E G +  R 
Sbjct: 376 AVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRH 410

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	627
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	9e-31
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	1e-21
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	6e-28
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	4e-22
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	3e-27
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	6e-21
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	4e-27
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	4e-23
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	3e-23
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	5e-19
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	8e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394

 Score =  123 bits (311), Expect = 9e-31
 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 9/172 (5%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           M+++ D+ F     N    +  +L+TE   NP  +R K+ E++FETY    V   + A  
Sbjct: 85  MKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVL 144

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL 120
           +      Y      G+ +  G   TH+ P  EG  +   + R +I G  IT YL +LL L
Sbjct: 145 TL-----YAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLL 199

Query: 121 KHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLP 172
           +         +E V  +K + CY+  +   E +L  + T   E     + LP
Sbjct: 200 RGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVES----YTLP 247

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394

 Score = 96.3 bits (240), Expect = 1e-21
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 15/143 (10%)

Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERF  PE LF+P+ + ++ VG+ E+   +I+     D D        I+++GG  
Sbjct: 252 IKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAA---DIDTRSEFYKHIVLSGGST 308

Query: 553 LFPGMSERLEAGIRMI-----------RPCGAPIKVVRALDPVLDAWRGASVYATKLQFP 601
           ++PG+  RLE  ++ +           +     I++          + G +V A  ++  
Sbjct: 309 MYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDK 368

Query: 602 QQT-FSRMDYYEKGENWLRRYQL 623
                +R +Y EKG   L +  +
Sbjct: 369 DNFWMTRQEYQEKGVRVLEKLGV 391

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427

 Score =  115 bits (290), Expect = 6e-28
 Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 9/176 (5%)

Query: 1   MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAA 59
           ME     +    L     +  H  L+TE   NP  +R   AE++FE++    +   V A 
Sbjct: 105 MERFWQQSLFKYLRCEPED--HYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAV 162

Query: 60  ---FSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQ 116
               +   + +    +  G  +  G   TH+IP  EG  +        + G  +T +++ 
Sbjct: 163 LALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQS 222

Query: 117 LLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLP 172
           LL  +   +    + +  E +K E CY+ PD   E   F +               
Sbjct: 223 LLRDR---NEPDSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITG 275

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427

 Score = 98.3 bits (245), Expect = 4e-22
 Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 18/152 (11%)

Query: 487 TKEDFQIVLGVERFRCPEILFRPNWVGID-QVGLDEMTGVSIRRLPTKDEDLEQRLTSSI 545
           T     I +G ERF  PEI F P     D    L E+    ++       D+ + L  +I
Sbjct: 274 TGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSS---PIDVRKGLYKNI 330

Query: 546 LMTGGCCLFPGMSERLEAGIRMI--------------RPCGAPIKVVRALDPVLDAWRGA 591
           +++GG  LF     RL+  ++ I              +  G  + V+         W G 
Sbjct: 331 VLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGG 390

Query: 592 SVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623
           S+ A   +F     ++ DY E G +  RRYQ+
Sbjct: 391 SLLAQTPEFGSYCHTKADYEEYGASIARRYQI 422

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418

 Score =  113 bits (285), Expect = 3e-27
 Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 9/176 (5%)

Query: 1   MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAA 59
           ME  ++      L A   +  H  L+TE   N   +R   AE++FE++ VP +   V A 
Sbjct: 89  MERFMEQVIFKYLRAEPED--HYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAV 146

Query: 60  ---FSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQ 116
               +   ++Q G     G  I  G   THVIP  EG  +        I G  IT +++Q
Sbjct: 147 LALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQ 206

Query: 117 LLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLP 172
           LL  +      + + E  + +K  + Y+ PD   E   F K   +     + +   
Sbjct: 207 LLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKE---FNKYDTDGSKWIKQYTGI 259

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418

 Score = 94.8 bits (236), Expect = 6e-21
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 20/151 (13%)

Query: 487 TKEDFQIVLGVERFRCPEILFRPNWVGID-QVGLDEMTGVSIRRLPTKDEDLEQRLTSSI 545
           +K++F I +G ERF  PEI F P +   D    + E+    I+       D+ + L  +I
Sbjct: 263 SKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNC---PIDVRRPLYKNI 319

Query: 546 LMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLD----------------AWR 589
           +++GG  +F     RL+  ++        +    +   +                   W 
Sbjct: 320 VLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWF 379

Query: 590 GASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
           G S+ A+  +F Q   ++ DY E G +  R 
Sbjct: 380 GGSMLASTPEFYQVCHTKKDYEEIGPSICRH 410

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375

 Score =  112 bits (282), Expect = 4e-27
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 1   MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAA 59
           ME I    F + L     E  HP L+TE   NP  +R KM +++FET+ VP++   + A 
Sbjct: 82  MEKIWHHTFYNELRVAPEE--HPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAV 139

Query: 60  FSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS 119
            S      Y      G+ +  G   TH +P  EG  +     R ++ G  +TDYL ++L+
Sbjct: 140 LSL-----YASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILT 194

Query: 120 LKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEH 164
            +    +T    E V D+K + CY+A D+ +E       +   + 
Sbjct: 195 ERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 239

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375

 Score =  100 bits (251), Expect = 4e-23
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)

Query: 493 IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCC 552
           I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+ + L ++ +M+GG  
Sbjct: 248 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTT 304

Query: 553 LFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612
           ++PG+++R++  I  + P    IK++   +     W G S+ A+   F Q   ++ +Y E
Sbjct: 305 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 364

Query: 613 KGENWLRR 620
            G + + R
Sbjct: 365 AGPSIVHR 372

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score =  102 bits (255), Expect = 3e-23
 Identities = 34/198 (17%), Positives = 58/198 (29%), Gaps = 34/198 (17%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
            +    +A        S    P L+TE V N   +R K  E+L E     +      +  
Sbjct: 95  AQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTC 154

Query: 61  SYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS- 119
                  +     + L +  G  T  V P V+G  + + + R  I G  I   +K+ L  
Sbjct: 155 VS-----FAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEP 209

Query: 120 ------------------------LKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLF 155
                                   +    +         ++ K   C+I P    E    
Sbjct: 210 KEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKT 269

Query: 156 QKGTKEAEHKTRCWQLPW 173
           +  +       R  + PW
Sbjct: 270 ELSST----AKRSIESPW 283

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score = 89.7 bits (222), Expect = 5e-19
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 7/133 (5%)

Query: 491 FQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGG 550
                  E  + P    +P     + +GL ++   SI        DL   L  ++++TGG
Sbjct: 366 NSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDV---DLRATLAHNVVLTGG 422

Query: 551 CCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPV---LDAWRGASVYATKLQFPQQTFSR 607
               PG+S+RL   +  I P     +++     +     +W G S+  +   F Q    +
Sbjct: 423 TSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGK 481

Query: 608 MDYYEKGENWLRR 620
            +Y E G   L  
Sbjct: 482 KEYEEVGVERLLN 494

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 28/194 (14%), Positives = 66/194 (34%), Gaps = 15/194 (7%)

Query: 184  EEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLS 243
            +    R  A +E +  ++   +  +       LEN+I  L+  + +  +  ++ +     
Sbjct: 894  QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK--- 950

Query: 244  DTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQ 303
                     +E T    T+ LR      ++ + E +     +      I      L   Q
Sbjct: 951  ------MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004

Query: 304  LKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLEN-----PELYVEQMRA 358
              EK+         +         ++E+    K  +EE  RR+ +      E   +++  
Sbjct: 1005 -TEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVE 1063

Query: 359  KYKELSEKIDQRKR 372
            + K+L   ++  + 
Sbjct: 1064 ETKQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 22/164 (13%), Positives = 62/164 (37%), Gaps = 10/164 (6%)

Query: 184  EEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLS 243
            E +I +     + Q +  + +   K ++       +   L   +++L    E +     +
Sbjct: 927  ENKIMQLQRKIDEQNKEYKSL-LEKMNNLEITYSTETEKLRSDVERLRM-SEEEAKNATN 984

Query: 244  DTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQ 303
                     ++  + KL + L + + E+K  +   +K      +   +  + +    L+ 
Sbjct: 985  R-----VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL--VSELKEQNTLLKT 1037

Query: 304  LKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLE 347
             KE+  +  +    +      +K++ EE +Q + +  +E  R +
Sbjct: 1038 EKEELNRR-IHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 17/190 (8%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 184  EEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLS 243
            +  +    +I  ++  R          +    +  Q      + ++  +  +  I A   
Sbjct: 859  QMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLK--IEARSV 916

Query: 244  DTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQ 303
            +        +E+ +++L + + +   E K    ++   + + + +             E+
Sbjct: 917  ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE------------TEK 964

Query: 304  LKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKEL 363
            L+    ++ +          +   ++EE+ + +K   + +   +  E + ++ + + ++L
Sbjct: 965  LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024

Query: 364  SEKIDQRKRL 373
              ++ ++  L
Sbjct: 1025 VSELKEQNTL 1034

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 32/188 (17%), Positives = 73/188 (38%), Gaps = 30/188 (15%)

Query: 184  EEEIARKAAIKERQGQRLREMAEAKRS--SRINELENQIHGLEFLLQQLEQVEENDIAAF 241
            EE +    A  E + +R +++   K+    ++ +LE Q+   E   Q+L+  +       
Sbjct: 926  EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG-- 983

Query: 242  LSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSL 301
                     +++E  ++ +     K   ERK+ +  +     ++ E+       +   +L
Sbjct: 984  -------KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE------EEKAKNL 1030

Query: 302  EQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYK 361
             +LK K                    +E  L++E+K+++E E+     E     +  +  
Sbjct: 1031 TKLKNKHES-------------MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077

Query: 362  ELSEKIDQ 369
            EL  +I +
Sbjct: 1078 ELQAQIAE 1085

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 36/204 (17%), Positives = 78/204 (38%), Gaps = 19/204 (9%)

Query: 184  EEEIARKAAIKERQG--QRLREMAE--AKRSSRINELENQIHGLEFLLQQLEQV--EEND 237
            EEE AR+    E+     ++++M +       + N+L  +   LE  +  L     EE +
Sbjct: 966  EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025

Query: 238  IAAFLSDTGYVSRQEIESTLVKLTQSLRKAKG-----ERKVEQAELEKTDASMNEKYPLI 292
             A  L+      + + ES + +L   L+K +      E+   + E E +D          
Sbjct: 1026 KAKNLTK----LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081

Query: 293  HIPDNMLSLEQLKEKRRQIFLKTTTEGRQRA----KQKRVEEELEQEKKNQEEEERRLEN 348
             I +    L + +E+ +    +   E  Q+     K + +E  +   +++ E E+     
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141

Query: 349  PELYVEQMRAKYKELSEKIDQRKR 372
             E     +  + + L  +++    
Sbjct: 1142 AEKQKRDLSEELEALKTELEDTLD 1165

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 13/183 (7%)

Query: 185  EEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSD 244
             ++    A +E + + L +  + K  S I+ELE ++   E   Q+LE+  +  +    SD
Sbjct: 1014 SDLTTNLAEEEEKAKNLTK-LKNKHESMISELEVRLKKEEKSRQELEK-IKRKLEGESSD 1071

Query: 245  TGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQL 304
                   E+++ + +L   L K + E +   A LE   +  N    L  I +    +  L
Sbjct: 1072 LHE-QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNN--ALKKIRELESHISDL 1128

Query: 305  KEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEE-ERRLENPELYVEQMRAKYKEL 363
            +E           E   R K ++ + +L +E +  + E E  L+      E   + YK+ 
Sbjct: 1129 QEDLES-------EKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181

Query: 364  SEK 366
             +K
Sbjct: 1182 DDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 41/269 (15%), Positives = 96/269 (35%), Gaps = 65/269 (24%)

Query: 196  RQGQRLREMAE--AKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEI 253
            RQ + ++   E   +   R  + E ++  LE    QL + E+N +   L      +  E+
Sbjct: 854  RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCE-EKNLLQEKLQ-----AETEL 907

Query: 254  ESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFL 313
             +   ++   L   K E +    E+E                       +++E+  +   
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEME----------------------ARIEEEEERS-- 943

Query: 314  KTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRL 373
                  + +A++K++++++   ++  EEEE   +  +L       K K++ + I   +  
Sbjct: 944  -----QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME-- 996

Query: 374  KTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLM 433
                               ++ N   +ER  L         +  D      E+ +  K +
Sbjct: 997  -------------------DQNNKLTKERKLL-------EERVSDLTTNLAEEEEKAKNL 1030

Query: 434  SRDNDDDDEEMDENEAELARISARLQEVD 462
            ++  +  +  + E E  L +     QE++
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELE 1059

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 7e-06
 Identities = 72/480 (15%), Positives = 127/480 (26%), Gaps = 146/480 (30%)

Query: 122 HPQHMTKLTWEKVEDLKMEHCY--IAPDYFSEAQLFQKG--TKEAEHKTRCWQLPWVPPP 177
           H  HM        E  + ++ Y  I    F +A  F      K+ +   +          
Sbjct: 3   HHHHM------DFETGEHQYQYKDILSV-FEDA--FVDNFDCKDVQDMPK---------- 43

Query: 178 TEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEEND 237
                    I  K  I                   I   ++ + G   L   L   +E  
Sbjct: 44  --------SILSKEEIDH-----------------IIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 238 IAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERK--VEQAELEKTDASMNEKYPLIHIP 295
           +  F+ +   V R   +  +  +    R+     +  +EQ +    D  +  KY  +   
Sbjct: 79  VQKFVEE---VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRL 134

Query: 296 DNMLSLEQ-LKEKRRQIFL---------KTTTEGRQRAKQKRVEEELEQE-----KKNQE 340
              L L Q L E R    +         KT           +V+ +++ +      KN  
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-DVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 341 EEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQR 400
             E  LE  +  + Q+   +   S   D    +K   +                L    +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRS---DHSSNIKLRIHSIQ-----------AELRRLLK 239

Query: 401 ERMR---LL---------TTAAFDRGKGEDTFGAKDEDWQLYKLM-SRDNDDDDEEMDEN 447
            +     LL            AF+          K        L+ +R     D      
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFN-------LSCK-------ILLTTRFKQVTDFLSAAT 285

Query: 448 EAELARISARLQEVDPTFVPKQ---------ESGPTQSAAEIPRVRPLTKEDFQIVLGVE 498
              +      L     T  P +         +  P     E+    P       + +  E
Sbjct: 286 TTHI-----SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-----LSIIAE 335

Query: 499 RFRCPEILFRP-NW--VGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFP 555
             R  + L    NW  V  D+  L  +   S+  L  +  +  +             +FP
Sbjct: 336 SIR--DGLATWDNWKHVNCDK--LTTIIESSLNVL--EPAEYRKMFDR-------LSVFP 382

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 9e-06
 Identities = 60/386 (15%), Positives = 102/386 (26%), Gaps = 127/386 (32%)

Query: 79  CPGFSTT---HVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVE 135
           C    TT    V  F+        S   +       D +K LL         K    + +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLL--------KYLDCRPQ 316

Query: 136 DLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKE 195
           DL  E     P   S   +        +     W   W                    K 
Sbjct: 317 DLPREVLTTNPRRLS---II--AESIRDGLAT-WD-NW--------------------KH 349

Query: 196 RQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDT---------- 245
               +L  + E+     +N LE          +++       ++ F              
Sbjct: 350 VNCDKLTTIIESS----LNVLE------PAEYRKMFD----RLSVFPPSAHIPTILLSLI 395

Query: 246 -GYVSRQEIESTLVKL-TQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQ 303
              V + ++   + KL   SL             +EK       K   I IP   + LE 
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSL-------------VEK-----QPKESTISIPS--IYLE- 434

Query: 304 LKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPEL--YVEQMRA--- 358
           LK K             + A  + +   ++     +  +   L  P L  Y         
Sbjct: 435 LKVKLEN----------EYALHRSI---VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 359 KYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGED 418
           K  E  E++   + +  +                      ++ ++R  +TA    G   +
Sbjct: 482 KNIEHPERMTLFRMVFLD------------------FRFLEQ-KIRHDSTAWNASGSILN 522

Query: 419 TFGAKDEDWQLYKLMSRDNDDDDEEM 444
           T        + YK    DND   E +
Sbjct: 523 TLQ----QLKFYKPYICDNDPKYERL 544

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-05
 Identities = 61/475 (12%), Positives = 140/475 (29%), Gaps = 144/475 (30%)

Query: 66  QQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS------ 119
            QY    KD   I   F       FV+           N     + D  K +LS      
Sbjct: 14  HQY--QYKD---ILSVFED----AFVD-----------NFDCKDVQDMPKSILSKEEIDH 53

Query: 120 -LKHPQHMTK---LTW-----------EKVED-LKMEHCYIAPDYFSEAQLFQKGTKE-A 162
            +     ++    L W           + VE+ L++ + ++     +E +     T+   
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 163 EHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKE-RQGQR--LREM---------AEAKRS 210
           E + R +    V         +  +  + A+ E R  +   +  +          +   S
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 211 SRI-NELENQIHGLEF--------LLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLT 261
            ++  +++ +I  L          +L+ L+++       +  D  + SR +  S +    
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL------LYQIDPNWTSRSDHSSNI---- 223

Query: 262 QSLRKAKGERKVEQAELEKTDASMNEKYP--LIHIPDNMLSLEQLKEKRRQIF------L 313
                   + ++   + E      ++ Y   L+ +  N+ + +         F      L
Sbjct: 224 --------KLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNA-----FNLSCKIL 269

Query: 314 KTTTEGRQRA------KQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKI 367
            TT   R +               L+        +E         V+ +  KY  L  + 
Sbjct: 270 LTT---RFKQVTDFLSAATTTHISLDHHSMTLTPDE---------VKSLLLKY--LDCRP 315

Query: 368 DQRKRLKTNGN--HTN--GNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAK 423
               R     N    +    +   G+   +       +++  +  ++ +     +     
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV---LEP---- 368

Query: 424 DEDWQLYKLMS--RDN-------------DDDDEEMDENEAELARISARLQEVDP 463
            E  +++  +S    +             D    ++     +L + S  L E  P
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQP 421

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 44.6 bits (104), Expect = 8e-05
 Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 3/190 (1%)

Query: 184 EEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLS 243
           E    R + + +     L E  +A   S+       +  L+ L ++  +     I A   
Sbjct: 401 EASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEI 460

Query: 244 DTGYV-SRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLE 302
              Y+ S++ +   +++  Q+L + + E +VE+ + E   AS    + +     N   +E
Sbjct: 461 LQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQR--KNEQMME 518

Query: 303 QLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKE 362
           Q +   ++   + T +      Q   E+E     K QE+E+   E  +     M+ + ++
Sbjct: 519 QKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578

Query: 363 LSEKIDQRKR 372
           L  K+ +RK 
Sbjct: 579 LQTKMRRRKA 588

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 33/108 (30%)

Query: 179 EEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDI 238
           +    E E  RK   +E Q +RL+E+  A +                  Q+  +  + D+
Sbjct: 78  DRLTQEPESIRKW--REEQRKRLQELDAASKVME---------------QEWREKAKKDL 120

Query: 239 AAFLSDTGYVSRQEIESTLVKLTQSLRKAKGE-RKVEQAELEKTDASM 285
             +        + E           + K K   R  ++A  ++ DA +
Sbjct: 121 EEW-----NQRQSE----------QVEKNKINNRIADKAFYQQPDADI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	627
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	100.0
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	100.0
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	100.0
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	100.0
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	100.0
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	100.0
4am6_A	655	Actin-like protein ARP8; nuclear protein, chromati	100.0
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	99.84
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	99.48
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	99.42
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	99.35
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	99.2
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	99.01
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	98.83
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	98.77
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	98.65
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	98.51
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	98.38
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	98.19
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	98.06
2fsj_A	346	Hypothetical protein TA0583; actin homologs, archa	97.3
3js6_A	355	Uncharacterized PARM protein; partition, segregati	96.46
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	96.29
4apw_A	329	ALP12; actin-like protein; 19.70A {Clostridium tet	95.87
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	93.78
2d0o_A	610	DIOL dehydratase-reactivating factor large subunit	91.36
1nbw_A	607	Glycerol dehydratase reactivase alpha subunit; mol	91.16
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	82.75

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.5e-64  Score=548.18  Aligned_cols=299  Identities=27%  Similarity=0.432  Sum_probs=253.7

Q ss_pred             CHHHHHHHH-hhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccC---ccCcceE
Q 006876            1 MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYG---ICNKDGL   76 (627)
Q Consensus         1 mE~iwd~if-~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~---~~~~tGL   76 (627)
                      ||.||+|+| ++|+++  |.+||||||||+++|+..|++++|+|||+|+||+++++.+++||+|++|...   ...+|||
T Consensus       105 ~e~iw~~~~~~~L~v~--~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tgl  182 (427)
T 3dwl_A          105 MERFWQQSLFKYLRCE--PEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGT  182 (427)
T ss_dssp             HHHHHHHHHHTTSCCC--GGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEE
T ss_pred             HHHHHHHHHhHhhCCC--CcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCceEE
Confidence            689999998 579999  7899999999999999999999999999999999999999999999998110   0147999


Q ss_pred             EEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhh
Q 006876           77 AICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQ  156 (627)
Q Consensus        77 VVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~  156 (627)
                      |||+|++.|+|+||++|+++.++++++++||+++|+||.++|..+++.   ..+.+++++|||++|||+.||.+|++.+.
T Consensus       183 VVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~---~~~~~~~~~IKe~~cyv~~d~~~e~~~~~  259 (427)
T 3dwl_A          183 VVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP---DSSLKTAERIKEECCYVCPDIVKEFSRFD  259 (427)
T ss_dssp             EEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC-----------CHHHHHHHHHHCCCCSCHHHHHHHTT
T ss_pred             EEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC---chhHHHHHHHHHhcCcccCCHHHHHHHhh
Confidence            999999999999999999999999999999999999999999998876   34678999999999999999998876432


Q ss_pred             cCchhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHH
Q 006876          157 KGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEEN  236 (627)
Q Consensus       157 ~~~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~  236 (627)
                      ..                       +                                                      
T Consensus       260 ~~-----------------------~------------------------------------------------------  262 (427)
T 3dwl_A          260 RE-----------------------P------------------------------------------------------  262 (427)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cC-----------------------c------------------------------------------------------
Confidence            20                       0                                                      


Q ss_pred             HHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcc
Q 006876          237 DIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTT  316 (627)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~  316 (627)
                                                                   .  ....|.| +-||                    
T Consensus       263 ---------------------------------------------~--~~~~~~l-~~~~--------------------  274 (427)
T 3dwl_A          263 ---------------------------------------------D--RYLKYAS-ESIT--------------------  274 (427)
T ss_dssp             --------------------------------------------------CCBCC-------------------------
T ss_pred             ---------------------------------------------c--ccceeEe-eCCC--------------------
Confidence                                                         0  0011211 0011                    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 006876          317 TEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLN  396 (627)
Q Consensus       317 ~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s  396 (627)
                                                                                                      
T Consensus       275 --------------------------------------------------------------------------------  274 (427)
T 3dwl_A          275 --------------------------------------------------------------------------------  274 (427)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCc
Q 006876          397 AAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQS  476 (627)
Q Consensus       397 ~~~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~  476 (627)
                                                                                                      
T Consensus       275 --------------------------------------------------------------------------------  274 (427)
T 3dwl_A          275 --------------------------------------------------------------------------------  274 (427)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCC-CCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCc
Q 006876          477 AAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGID-QVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFP  555 (627)
Q Consensus       477 ~~~~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~-~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ip  555 (627)
                                 ...+.|.++.|||+|||+||+|+++|.+ ..||+++|.+||++   ||+|+|+.|++|||||||+|+||
T Consensus       275 -----------g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~---c~~dlr~~L~~nIvLtGG~sl~~  340 (427)
T 3dwl_A          275 -----------GHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQS---SPIDVRKGLYKNIVLSGGSTLFK  340 (427)
T ss_dssp             ----------------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHT---SCHHHHHHHHHCEEEESGGGCST
T ss_pred             -----------CCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHh---CCHHHHHHHhCCEEEEccCcCCC
Confidence                       0124788999999999999999999999 58999999999995   69999999999999999999999


Q ss_pred             ChHHHHHHHHHhhc--------------CCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHh
Q 006876          556 GMSERLEAGIRMIR--------------PCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRY  621 (627)
Q Consensus       556 Gf~eRL~~EL~~l~--------------p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k  621 (627)
                      ||.+||++||+.++              |..++|+|+++++|.|++|+||||||++++|+++||||+||+|+|++|||+|
T Consensus       341 G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl~~f~~~witk~EYeE~G~~iv~~~  420 (427)
T 3dwl_A          341 NFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRY  420 (427)
T ss_dssp             TTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHSTTHHHHSEEHHHHHHSCGGGGSCC
T ss_pred             ChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccccchhheeEEHHHHhhhChHhheec
Confidence            99999999999987              5677899999999999999999999999999999999999999999999998


Q ss_pred             cc
Q 006876          622 QL  623 (627)
Q Consensus       622 ~~  623 (627)
                      ++
T Consensus       421 ~~  422 (427)
T 3dwl_A          421 QI  422 (427)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-63  Score=549.98  Aligned_cols=289  Identities=24%  Similarity=0.338  Sum_probs=253.7

Q ss_pred             CHHHHHHHHh-hcCCCCCCCcc-cEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEE
Q 006876            1 MEYILDFAFD-RLGANGSEIDH-PVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAI   78 (627)
Q Consensus         1 mE~iwd~if~-~L~v~~~p~d~-pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVV   78 (627)
                      ||.||+|+|. .|+++  |.+| |||||+|+++|...|++|+|+|||.|+||+++++.+++||+||+|     .+|||||
T Consensus        95 ~E~iw~~~f~~~L~v~--p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G-----~~tglVV  167 (498)
T 3qb0_A           95 AQEQWQWALQNELYLN--SNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAG-----RPNCLVV  167 (498)
T ss_dssp             HHHHHHHHHHHTSCCS--CCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHT-----CSSEEEE
T ss_pred             HHHHHHHHHHhhhCCC--cccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcC-----CCeEEEE
Confidence            6899999995 69999  7899 999999999999999999999999999999999999999999999     8999999


Q ss_pred             ecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccC------------------CCCCCc------c-cHHH
Q 006876           79 CPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKH------------------PQHMTK------L-TWEK  133 (627)
Q Consensus        79 DiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~------------------~~~~~~------~-~~~~  133 (627)
                      |+|++.|+|+||++|+++.+++.++++||+++|+||.++|..++                  +.+...      . +.++
T Consensus       168 DiG~g~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~i  247 (498)
T 3qb0_A          168 DIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGF  247 (498)
T ss_dssp             EECSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTH
T ss_pred             EcCCCcEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998642                  222111      1 3458


Q ss_pred             HHHHHHhccccccC--HHHHHHHhhcCchhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 006876          134 VEDLKMEHCYIAPD--YFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSS  211 (627)
Q Consensus       134 ve~IKE~~CyVa~D--y~~E~~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~  211 (627)
                      +++|||++|||+.|  |..+......                                                      
T Consensus       248 v~~iKE~~c~Va~~~~~~~~~~~~~~------------------------------------------------------  273 (498)
T 3qb0_A          248 FQECKETLCHICPTKTLEETKTELSS------------------------------------------------------  273 (498)
T ss_dssp             HHHHHHHTCCCCSSCHHHHHHHHHHT------------------------------------------------------
T ss_pred             HHHHHHhhEEecCCccHhHHhhhccC------------------------------------------------------
Confidence            99999999999987  3332210000                                                      


Q ss_pred             HHHHHHHHHhhHHHHHHHHhhhhHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCc
Q 006876          212 RINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPL  291 (627)
Q Consensus       212 ~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L  291 (627)
                                                                                              .....|.|
T Consensus       274 ------------------------------------------------------------------------~~~~~yeL  281 (498)
T 3qb0_A          274 ------------------------------------------------------------------------TAKRSIES  281 (498)
T ss_dssp             ------------------------------------------------------------------------CCCEEEEC
T ss_pred             ------------------------------------------------------------------------cCceEEEC
Confidence                                                                                    00112322


Q ss_pred             ccCCCcccCHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 006876          292 IHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRK  371 (627)
Q Consensus       292 ~~ipd~~l~~eq~kekr~q~~~k~~~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~  371 (627)
                         |                                                                            
T Consensus       282 ---P----------------------------------------------------------------------------  282 (498)
T 3qb0_A          282 ---P----------------------------------------------------------------------------  282 (498)
T ss_dssp             ---S----------------------------------------------------------------------------
T ss_pred             ---C----------------------------------------------------------------------------
Confidence               2                                                                            


Q ss_pred             HHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHH
Q 006876          372 RLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAEL  451 (627)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~r~s~~~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l  451 (627)
                                                                                                      
T Consensus       283 --------------------------------------------------------------------------------  282 (498)
T 3qb0_A          283 --------------------------------------------------------------------------------  282 (498)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhhhhcCCCCCCCCCCCCCCccccCCCcCCCCCCCcEEEcCcc-cccccccCcCCCCCCC----------------
Q 006876          452 ARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVE-RFRCPEILFRPNWVGI----------------  514 (627)
Q Consensus       452 ~~~~~~l~~~dp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~I~lg~E-rf~~pE~LF~Psl~g~----------------  514 (627)
                                                           +++.|.||.| ||+|||+||+|+++|.                
T Consensus       283 -------------------------------------DG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~  325 (498)
T 3qb0_A          283 -------------------------------------WNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWR  325 (498)
T ss_dssp             -------------------------------------SSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCS
T ss_pred             -------------------------------------CCCEEEECchHhhhCchhhCCHhHcCCcccccccccccccccc
Confidence                                                 2578999999 9999999999998865                


Q ss_pred             ----------------------------------------------------------------CCCCccHHHHHhcccC
Q 006876          515 ----------------------------------------------------------------DQVGLDEMTGVSIRRL  530 (627)
Q Consensus       515 ----------------------------------------------------------------~~~gL~e~I~~sI~~~  530 (627)
                                                                                      +.+||+++|.+||++ 
T Consensus       326 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~-  404 (498)
T 3qb0_A          326 NDYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMS-  404 (498)
T ss_dssp             CCCCCCCBCC-----------------------------------------------------CCSCCHHHHHHHHHHT-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHh-
Confidence                                                                            567999999999995 


Q ss_pred             CCCChhhHHhccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeC---CCCccceeeccccccCcCCCCcccccH
Q 006876          531 PTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRA---LDPVLDAWRGASVYATKLQFPQQTFSR  607 (627)
Q Consensus       531 ~~c~~d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~---~~~~~saW~GgsilAsl~~f~~~~ITk  607 (627)
                        ||+|+|+.||+||||+||+|+||||.+||++||+.++| .++++|+++   ++|.|++|+||||||++++|+++||||
T Consensus       405 --cd~d~r~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p-~~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk  481 (498)
T 3qb0_A          405 --SDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGK  481 (498)
T ss_dssp             --SCTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHST-TSCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEH
T ss_pred             --CCHHHHHHHhcCEEEeCCccCchhHHHHHHHHHHHhCC-CCeeEEEcCCCCCccCccEEcccEEEecCcchhceEEEH
Confidence              79999999999999999999999999999999999999 889999987   689999999999999999999999999


Q ss_pred             HHHhhhCh-hHHHHhc
Q 006876          608 MDYYEKGE-NWLRRYQ  622 (627)
Q Consensus       608 ~eY~E~G~-~iv~~k~  622 (627)
                      +||+|+|+ +||++||
T Consensus       482 ~EY~E~G~~~iv~~kc  497 (498)
T 3qb0_A          482 KEYEEVGVERLLNDRF  497 (498)
T ss_dssp             HHHHTTCCHHHHHHTT
T ss_pred             HHHhhhCcHhhccccC
Confidence            99999999 8999987

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=100.00  E-value=8.5e-60  Score=532.74  Aligned_cols=143  Identities=13%  Similarity=0.083  Sum_probs=132.6

Q ss_pred             CHHHHHHHHh-hcCCCCCCCc---ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceE
Q 006876            1 MEYILDFAFD-RLGANGSEID---HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGL   76 (627)
Q Consensus         1 mE~iwd~if~-~L~v~~~p~d---~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGL   76 (627)
                      ||.||+|+|. +|+|+  |.+   ||||||||+++|+..|++|+|+|||+|+||+++++.+++||+||+|     .+|||
T Consensus       177 ~e~iw~~~~~~~L~i~--~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G-----~~tgl  249 (593)
T 4fo0_A          177 IEVIWSHAIQKYLEIP--LKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSG-----LSSTC  249 (593)
T ss_dssp             HHHHHHHHHHHTSCCC--GGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHT-----CSEEE
T ss_pred             HHHHHHHHHHHhcCCC--chhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCC-----CCceE
Confidence            6899999995 79998  454   9999999999999999999999999999999999999999999999     99999


Q ss_pred             EEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCC-----cccHHHHHHHHHhccccccCHHH
Q 006876           77 AICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMT-----KLTWEKVEDLKMEHCYIAPDYFS  150 (627)
Q Consensus        77 VVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~-----~~~~~~ve~IKE~~CyVa~Dy~~  150 (627)
                      |||+|++.|+|+||++|+++.+++.++++||++||+||.++|..+++.+..     ..++.++++|||++|||+.|+..
T Consensus       250 VVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~  328 (593)
T 4fo0_A          250 IVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHLDQDISG  328 (593)
T ss_dssp             EEEECSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHHHHHTTCSCTTCCTTCHHHHHHHHHHHHHHCBCCTTCCS
T ss_pred             EEEeCCCceeeeeeECCEEehhheEEecccHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhcccccchHH
Confidence            999999999999999999999999999999999999999999998765432     34778999999999999988544

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=100.00  E-value=5.4e-58  Score=495.44  Aligned_cols=290  Identities=28%  Similarity=0.463  Sum_probs=155.3

Q ss_pred             CHHHHHHHH--hhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEE
Q 006876            1 MEYILDFAF--DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAI   78 (627)
Q Consensus         1 mE~iwd~if--~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVV   78 (627)
                      ||.||+|+|  +.|+++  +.++|||||+|+++|...|++++++|||.|+||++++++++++|+|++|     .++|+||
T Consensus        85 ~e~i~~~~~~~~~L~~~--~~~~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g-----~~~~lVV  157 (394)
T 1k8k_B           85 MKHLWDYTFGPEKLNID--TRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQG-----LLTGVVV  157 (394)
T ss_dssp             ----------------------------------------------------------------------------CCEE
T ss_pred             HHHHHHHHhcccccCcC--CCCCcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCC-----CceEEEE
Confidence            689999999  579999  7899999999999999999999999999999999999999999999999     8999999


Q ss_pred             ecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcC
Q 006876           79 CPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKG  158 (627)
Q Consensus        79 DiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~  158 (627)
                      |+|++.|+|+||++|+++.+++.++++||+++|++|.++|..+++.+....+...+++||+++|||+.||..+++.....
T Consensus       158 DiG~g~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~~~  237 (394)
T 1k8k_B          158 DSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALET  237 (394)
T ss_dssp             EECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHHHC
T ss_pred             EcCCCceEeeeeECCEEcccceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhccC
Confidence            99999999999999999999999999999999999999999988888766788999999999999999987765421100


Q ss_pred             chhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHH
Q 006876          159 TKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDI  238 (627)
Q Consensus       159 ~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~  238 (627)
                                                                                                      
T Consensus       238 --------------------------------------------------------------------------------  237 (394)
T 1k8k_B          238 --------------------------------------------------------------------------------  237 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchh
Q 006876          239 AAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTE  318 (627)
Q Consensus       239 ~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~  318 (627)
                                                                +  .....|.|   ||                      
T Consensus       238 ------------------------------------------~--~~~~~~~l---pd----------------------  248 (394)
T 1k8k_B          238 ------------------------------------------T--VLVESYTL---PD----------------------  248 (394)
T ss_dssp             ------------------------------------------S--TTCEEEEC---TT----------------------
T ss_pred             ------------------------------------------C--cCceEEEC---CC----------------------
Confidence                                                      0  00011222   21                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHH
Q 006876          319 GRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAA  398 (627)
Q Consensus       319 ~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~  398 (627)
                                                                                                      
T Consensus       249 --------------------------------------------------------------------------------  248 (394)
T 1k8k_B          249 --------------------------------------------------------------------------------  248 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCccc
Q 006876          399 QRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAA  478 (627)
Q Consensus       399 ~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~  478 (627)
                                                                                                      
T Consensus       249 --------------------------------------------------------------------------------  248 (394)
T 1k8k_B          249 --------------------------------------------------------------------------------  248 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChH
Q 006876          479 EIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMS  558 (627)
Q Consensus       479 ~~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~  558 (627)
                                 ++.|.++.|||+|||+||+|+++|.+..||+++|.++|.+   ||+|+|+.|++|||||||+|+||||.
T Consensus       249 -----------g~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~---~~~d~r~~l~~nIvLtGG~s~~~G~~  314 (394)
T 1k8k_B          249 -----------GRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQA---ADIDTRSEFYKHIVLSGGSTMYPGLP  314 (394)
T ss_dssp             -----------SCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHH---SCTTTHHHHHTTCEEESGGGCSTTHH
T ss_pred             -----------CCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHh---CCHHHHHHHHhCEEEeCcccccccHH
Confidence                       3679999999999999999999999999999999999996   69999999999999999999999999


Q ss_pred             HHHHHHHHhhc-----------CCCCCeeEeeCCCCccceeeccccccCcCCCC-cccccHHHHhhhChhHHHH
Q 006876          559 ERLEAGIRMIR-----------PCGAPIKVVRALDPVLDAWRGASVYATKLQFP-QQTFSRMDYYEKGENWLRR  620 (627)
Q Consensus       559 eRL~~EL~~l~-----------p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~-~~~ITk~eY~E~G~~iv~~  620 (627)
                      +||++||..+.           |..++++|+.+++|.+++|+|||++|++++|+ ++||||+||+|+|++++++
T Consensus       315 ~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~~itk~eY~e~G~~~~~~  388 (394)
T 1k8k_B          315 SRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK  388 (394)
T ss_dssp             HHHHHHHHHHHHHHTCSSCCCTTCCCCC----------------------------------------------
T ss_pred             HHHHHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCCcCCccceeecHHHHhhhCHHHHHh
Confidence            99999999988           88889999999999999999999999999999 9999999999999999987

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=100.00  E-value=4.9e-57  Score=484.28  Aligned_cols=293  Identities=31%  Similarity=0.578  Sum_probs=262.2

Q ss_pred             CHHHHHHHH-hhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876            1 MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC   79 (627)
Q Consensus         1 mE~iwd~if-~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD   79 (627)
                      ||.||+|+| +.|+++  +.+++||||+|++++...|+++++++||.|++|++++++++++|+|++|     .++|+|||
T Consensus        82 ~e~i~~~~~~~~L~~~--~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g-----~~~~lVvD  154 (375)
T 2fxu_A           82 MEKIWHHTFYNELRVA--PEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-----RTTGIVLD  154 (375)
T ss_dssp             HHHHHHHHHHTTSCCC--GGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT-----CSSEEEEE
T ss_pred             HHHHHHHHHHHhcCCC--CcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecC-----CCeEEEEE
Confidence            589999999 579999  7899999999999999999999999999999999999999999999999     89999999


Q ss_pred             cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876           80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT  159 (627)
Q Consensus        80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~  159 (627)
                      +|+++|+|+||++|+++.+++.++++||+++|++|.++|..+++.+....+...+++||+++|||+.||..++...... 
T Consensus       155 iG~gtt~v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~-  233 (375)
T 2fxu_A          155 SGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASS-  233 (375)
T ss_dssp             ECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHC-
T ss_pred             cCCCceEEeEeECCEEeccceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhccc-
Confidence            9999999999999999999999999999999999999999988777555577899999999999999987766432110 


Q ss_pred             hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876          160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA  239 (627)
Q Consensus       160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~  239 (627)
                                                                                                      
T Consensus       234 --------------------------------------------------------------------------------  233 (375)
T 2fxu_A          234 --------------------------------------------------------------------------------  233 (375)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876          240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG  319 (627)
Q Consensus       240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~  319 (627)
                                                               +  ..+..|.|   |                        
T Consensus       234 -----------------------------------------~--~~~~~~~l---p------------------------  243 (375)
T 2fxu_A          234 -----------------------------------------S--SLEKSYEL---P------------------------  243 (375)
T ss_dssp             -----------------------------------------S--TTCEEEEC---T------------------------
T ss_pred             -----------------------------------------C--ccCeEEEC---C------------------------
Confidence                                                     0  00011221   1                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876          320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ  399 (627)
Q Consensus       320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~  399 (627)
                                                                                                      
T Consensus       244 --------------------------------------------------------------------------------  243 (375)
T 2fxu_A          244 --------------------------------------------------------------------------------  243 (375)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876          400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE  479 (627)
Q Consensus       400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~  479 (627)
                                                                                                      
T Consensus       244 --------------------------------------------------------------------------------  243 (375)
T 2fxu_A          244 --------------------------------------------------------------------------------  243 (375)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHH
Q 006876          480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSE  559 (627)
Q Consensus       480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~e  559 (627)
                               .++.|.++.|||.|||+||+|+++|.+..||+++|.++|.+   ||+++|+.|++|||||||+|+||||.+
T Consensus       244 ---------dg~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~---~~~~~~~~l~~~IvLtGG~s~~pG~~~  311 (375)
T 2fxu_A          244 ---------DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMK---CDIDIRKDLYANNVMSGGTTMYPGIAD  311 (375)
T ss_dssp             ---------TSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHT---SCHHHHHHHHTCEEEESGGGCSTTHHH
T ss_pred             ---------CCCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHh---CCHHHHHHHHhCcEeeCCCCCCccHHH
Confidence                     13679999999999999999999999999999999999995   699999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876          560 RLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL  623 (627)
Q Consensus       560 RL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~  623 (627)
                      ||++||..+.|...+++|+.+++|.+++|+||+++|++++|+++||||+||+|+|++++++||+
T Consensus       312 rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~~~~~~k~~  375 (375)
T 2fxu_A          312 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF  375 (375)
T ss_dssp             HHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC----
T ss_pred             HHHHHHHHhCCCCeeEEEEcCCCCCccEEcchHHhhCcccHhhceeeHHHHhhhChHHHhhhcc
Confidence            9999999999999899999999999999999999999999999999999999999999999985

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=100.00  E-value=1.4e-54  Score=470.59  Aligned_cols=298  Identities=27%  Similarity=0.401  Sum_probs=261.9

Q ss_pred             CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhh---------ccccCc
Q 006876            1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKY---------NQQYGI   70 (627)
Q Consensus         1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya---------~G~~~~   70 (627)
                      ||.||+|+|. .|+++  |.+++||||+|++++...|+++.+++||.|++|++++++++++|+|+         .|    
T Consensus        89 ~e~i~~~~~~~~L~~~--~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~----  162 (418)
T 1k8k_A           89 MERFMEQVIFKYLRAE--PEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERT----  162 (418)
T ss_dssp             HHHHHHHHHHTTTCCC--GGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCC----
T ss_pred             HHHHHHHHHHhccCCC--CCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCC----
Confidence            5889999995 79998  78999999999999999999999999999999999999999999998         34    


Q ss_pred             cCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHH
Q 006876           71 CNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFS  150 (627)
Q Consensus        71 ~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~  150 (627)
                       . +|||||+|++.|+|+||++|+++.+++.++++||+++|++|.++|..++..+....+...+++||+++|||+.||..
T Consensus       163 -~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~  240 (418)
T 1k8k_A          163 -L-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVK  240 (418)
T ss_dssp             -C-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCCCSCHHH
T ss_pred             -C-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhchhcccHHH
Confidence             4 99999999999999999999999999999999999999999999999888776666789999999999999999887


Q ss_pred             HHHHhhcCchhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHH
Q 006876          151 EAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQL  230 (627)
Q Consensus       151 E~~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~  230 (627)
                      +++++...+                                                                       
T Consensus       241 e~~~~~~~~-----------------------------------------------------------------------  249 (418)
T 1k8k_A          241 EFNKYDTDG-----------------------------------------------------------------------  249 (418)
T ss_dssp             HHHHHHHSG-----------------------------------------------------------------------
T ss_pred             HHHhhcccc-----------------------------------------------------------------------
Confidence            765432200                                                                       


Q ss_pred             hhhhHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHH
Q 006876          231 EQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQ  310 (627)
Q Consensus       231 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q  310 (627)
                                                                          ......|.|   ||+.            
T Consensus       250 ----------------------------------------------------~~~~~~~~l---pd~~------------  262 (418)
T 1k8k_A          250 ----------------------------------------------------SKWIKQYTG---INAI------------  262 (418)
T ss_dssp             ----------------------------------------------------GGTCEEEEE---ECTT------------
T ss_pred             ----------------------------------------------------cccceeEEC---CCCC------------
Confidence                                                                000012222   3210            


Q ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 006876          311 IFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVG  390 (627)
Q Consensus       311 ~~~k~~~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~  390 (627)
                                                                                                      
T Consensus       263 --------------------------------------------------------------------------------  262 (418)
T 1k8k_A          263 --------------------------------------------------------------------------------  262 (418)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccHHHHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCC
Q 006876          391 RGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQE  470 (627)
Q Consensus       391 ~~~r~s~~~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~  470 (627)
                                                                                                      
T Consensus       263 --------------------------------------------------------------------------------  262 (418)
T 1k8k_A          263 --------------------------------------------------------------------------------  262 (418)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCccccCCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCC-CCccHHHHHhcccCCCCChhhHHhccCCeEEec
Q 006876          471 SGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQ-VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTG  549 (627)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~-~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtG  549 (627)
                                      +.....+.++.|||+|||+||+|+++|.+. .||+++|.++|.+   ||+++|+.+++||||||
T Consensus       263 ----------------~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~---~~~~~~~~l~~~IvL~G  323 (418)
T 1k8k_A          263 ----------------SKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQN---CPIDVRRPLYKNIVLSG  323 (418)
T ss_dssp             ----------------TCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHH---SCGGGTTHHHHCEEEES
T ss_pred             ----------------CCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHc---CCHHHHHHHHhceEEeC
Confidence                            001257999999999999999999999885 7999999999996   69999999999999999


Q ss_pred             CCCCCcChHHHHHHHHHhhc----------------CCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhh
Q 006876          550 GCCLFPGMSERLEAGIRMIR----------------PCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEK  613 (627)
Q Consensus       550 G~s~ipGf~eRL~~EL~~l~----------------p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~  613 (627)
                      |+|+||||.+||++||..++                |...+++|+.+++|.+++|+|||++|++++|+++||||+||+|+
T Consensus       324 G~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~itk~ey~e~  403 (418)
T 1k8k_A          324 GSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEI  403 (418)
T ss_dssp             GGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHHHHH
T ss_pred             CccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcCccHhheEEEHHHHhhh
Confidence            99999999999999999886                66778999999999999999999999999999999999999999


Q ss_pred             ChhHHHHhcc
Q 006876          614 GENWLRRYQL  623 (627)
Q Consensus       614 G~~iv~~k~~  623 (627)
                      |++|+++|++
T Consensus       404 G~~~~~~~~~  413 (418)
T 1k8k_A          404 GPSICRHNPV  413 (418)
T ss_dssp             CGGGGGCCCC
T ss_pred             CHHHHhhhcc
Confidence            9999999764

>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*

Probab=100.00  E-value=2.6e-51  Score=459.63  Aligned_cols=140  Identities=16%  Similarity=0.134  Sum_probs=131.1

Q ss_pred             CHHHHHHHHh--hcCCCCCCC---cccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccC-cc
Q 006876            1 MEYILDFAFD--RLGANGSEI---DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICN-KD   74 (627)
Q Consensus         1 mE~iwd~if~--~L~v~~~p~---d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~-~t   74 (627)
                      ||.||+|+|.  +|+++  |.   ++|||||||+++|+..|++|+|+|||+|+||+++++.++++|+||+|     . +|
T Consensus       199 mE~Iw~y~f~~~~L~V~--p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasG-----l~tt  271 (655)
T 4am6_A          199 VTKLLEHALNSETLNVK--PTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAG-----ISTS  271 (655)
T ss_dssp             HHHHHHHHHBSSSCBCC--GGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSC-----CSSC
T ss_pred             HHHHHHHHhcccccccc--ccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCC-----CCCc
Confidence            6899999996  89999  65   89999999999999999999999999999999999999999999999     5 89


Q ss_pred             eEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCC-----CCCCcccHHHHHHHHHhccccc-cC
Q 006876           75 GLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHP-----QHMTKLTWEKVEDLKMEHCYIA-PD  147 (627)
Q Consensus        75 GLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~-----~~~~~~~~~~ve~IKE~~CyVa-~D  147 (627)
                      |||||+|++.|+|+||++|+++.++++++++||+++|+||.++|..+++     ++....+.+++++|||++|||+ .|
T Consensus       272 GLVVDiG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t~~e~eiVrdIKEk~CyVs~~D  350 (655)
T 4am6_A          272 TCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFTTFQDAD  350 (655)
T ss_dssp             EEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTSHHHHHHHHHHHHHHCCCCGGG
T ss_pred             eEEEcCCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHHheEEEcccc
Confidence            9999999999999999999999999999999999999999999999875     4566668899999999999994 44

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=99.84  E-value=3.5e-21  Score=202.78  Aligned_cols=141  Identities=13%  Similarity=0.034  Sum_probs=114.6

Q ss_pred             CHHHHHHHHhhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEec
Q 006876            1 MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICP   80 (627)
Q Consensus         1 mE~iwd~if~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDi   80 (627)
                      +|.+|.|+|.++.....+...+++||.|+.++...|+.+.++ |+.+|++.+.+++++++|+++++.......+++|||+
T Consensus        76 ~~~i~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~a-~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDi  154 (344)
T 1jce_A           76 ALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDA-GLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDI  154 (344)
T ss_dssp             HHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHH-HHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEE
T ss_pred             HHHHHHHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEe
Confidence            478999999765331113468999999999999999999995 7999999999999999999998822112368999999


Q ss_pred             CCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccC
Q 006876           81 GFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPD  147 (627)
Q Consensus        81 G~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~D  147 (627)
                      |+++|+|+++..|.++.  ...+++||.++|+.|.++|..++.   .......++++|+.+|++..+
T Consensus       155 Gggttdvsv~~~~~~~~--~~~~~lGG~~id~~l~~~l~~~~~---~~~~~~~ae~~K~~l~~~~~~  216 (344)
T 1jce_A          155 GGGTTEVAVISLGSIVT--WESIRIAGDEMDEAIVQYVRETYR---VAIGERTAERVKIEIGNVFPS  216 (344)
T ss_dssp             CSSCEEEEEEETTEEEE--EEEESCSHHHHHHHHHHHHHHHHC---EECCHHHHHHHHHHHCBCSCC
T ss_pred             CCCeEEEEEEEcCCEEe--eCCCCccChhHHHHHHHHHHHHhC---cccCHHHHHHHHHHHhccCcc
Confidence            99999999999998874  567899999999999999976531   123578899999999887654

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=99.48  E-value=1.3e-13  Score=140.01  Aligned_cols=120  Identities=15%  Similarity=0.126  Sum_probs=92.8

Q ss_pred             HHHHHHHHhh----cCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEE
Q 006876            2 EYILDFAFDR----LGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLA   77 (627)
Q Consensus         2 E~iwd~if~~----L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLV   77 (627)
                      +.+|.+++..    ++..    ...++++.|.......| ..++.+|+.++++...+..++.++++++|     ..+++|
T Consensus        74 ~~~l~~~~~~~~~~~~~~----~~~~v~tvp~~~~~~~~-~~~~~~~~~~g~~~~~i~~e~~A~a~~~~-----~~~~~v  143 (272)
T 3h1q_A           74 IQIVRELKAKVERLLGSE----LFQAATAIPPGTVGRNA-EACGHVVAGAGLELVTLVDEPVAAARALG-----INDGIV  143 (272)
T ss_dssp             HHHHHHHHHHHHHHSSSC----CCEEEEECCSCC---CT-THHHHHHHHTTCEEEEEECHHHHHHHHHT-----CSSEEE
T ss_pred             HHHHHHHHHHHHHhcCCc----cCeEEEEcCCCCCHHHH-HHHHHHHHHcCCeeeecccHHHHHHHHHc-----CCCEEE
Confidence            5678888742    2333    24566777665555555 45566899999999999999999999999     788999


Q ss_pred             EecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcc
Q 006876           78 ICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHC  142 (627)
Q Consensus        78 VDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~C  142 (627)
                      ||+|++.|.++++.+|.++.  ...+++||.++++.+.+.|.         .+...++.+|+++|
T Consensus       144 iDiGggst~~~~~~~g~~~~--~~~~~~Gg~~~~~~l~~~l~---------~~~~~ae~~k~~~~  197 (272)
T 3h1q_A          144 VDIGGGTTGIAVIEKGKITA--TFDEPTGGTHLSLVLAGSYK---------IPFEEAETIKKDFS  197 (272)
T ss_dssp             EEECSSCEEEEEEETTEEEE--ECCBSCCHHHHHHHHHHHHT---------CCHHHHHHHHHSST
T ss_pred             EEECCCcEEEEEEECCEEEE--EecCCCcHHHHHHHHHHHhC---------CCHHHHHHHHHhcC
Confidence            99999999999999999874  46789999999999998874         24566777777654

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=99.42  E-value=1.3e-13  Score=146.76  Aligned_cols=101  Identities=12%  Similarity=-0.086  Sum_probs=79.0

Q ss_pred             cccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCc-cCcceEEEecCCCceeeeeeecC-----
Q 006876           20 DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGI-CNKDGLAICPGFSTTHVIPFVEG-----   93 (627)
Q Consensus        20 d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~-~~~tGLVVDiG~~~T~IvPV~dG-----   93 (627)
                      ...+++|.|..++...|+.+.+. ++..|++.+.++.+|++++++++.... ...+.+|||+|.++|.++.+..+     
T Consensus       135 ~~~~vitvP~~~~~~~r~~~~~a-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~  213 (383)
T 1dkg_D          135 VTEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGE  213 (383)
T ss_dssp             CCEEEECBCTTCCHHHHHHHHHH-HHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----
T ss_pred             CCeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCC
Confidence            34699999999999999999887 688999999999999999998872110 13478999999999999977644     


Q ss_pred             -eecccC-eEEecccHHHHHHHHHHHHhcc
Q 006876           94 -EPVYRG-SCRTNIGGYHITDYLKQLLSLK  121 (627)
Q Consensus        94 -~~i~~a-~~rl~iGG~~lt~yL~~lL~~r  121 (627)
                       .....+ ....++||.++++.|.++|..+
T Consensus       214 ~~~~v~~~~~~~~lGG~~id~~l~~~l~~~  243 (383)
T 1dkg_D          214 KTFEVLATNGDTHLGGEDFDSRLINYLVEE  243 (383)
T ss_dssp             CCCEEEEEEEESSCSHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence             221112 3446899999999999888653

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=99.35  E-value=4.2e-13  Score=149.29  Aligned_cols=118  Identities=14%  Similarity=-0.013  Sum_probs=87.7

Q ss_pred             HHHHHHHHhhcCCCC----CCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEE
Q 006876            2 EYILDFAFDRLGANG----SEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLA   77 (627)
Q Consensus         2 E~iwd~if~~L~v~~----~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLV   77 (627)
                      |+||.++|.+|....    ......++||.|..++...|+.+.+. ++..|++.+.++++|++|++++|.......+.+|
T Consensus        87 ~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a-~~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vlV  165 (509)
T 2v7y_A           87 QEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDA-GRIAGLEVERIINEPTAAALAYGLDKEEDQTILV  165 (509)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHH-HHHTTCEEEEEEEHHHHHHHHTTGGGSCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecCHHHHHHHHhhccCCCCEEEE
Confidence            566666664432110    02246799999999999999999986 5889999999999999999988722112357999


Q ss_pred             EecCCCceeeeeee--cCee-cccCeEEecccHHHHHHHHHHHHhc
Q 006876           78 ICPGFSTTHVIPFV--EGEP-VYRGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        78 VDiG~~~T~IvPV~--dG~~-i~~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      ||+|+++|.|+.+-  +|.. +.......++||.++++.|.++|..
T Consensus       166 ~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~  211 (509)
T 2v7y_A          166 YDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVN  211 (509)
T ss_dssp             EEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred             EECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHH
Confidence            99999999998665  3533 2222345689999999999988754

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=99.01  E-value=2.6e-10  Score=122.24  Aligned_cols=99  Identities=16%  Similarity=0.045  Sum_probs=77.2

Q ss_pred             cccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCc----cCcceEEEecCCCceeeeeee--cC
Q 006876           20 DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGI----CNKDGLAICPGFSTTHVIPFV--EG   93 (627)
Q Consensus        20 d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~----~~~tGLVVDiG~~~T~IvPV~--dG   93 (627)
                      -..++||.|+.++...|+.+.+. ++..|++.+.+++++.+|+++++....    ...+-+|||+|.++|.++.+-  +|
T Consensus       158 ~~~~vitvPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~  236 (404)
T 3i33_A          158 VHSAVITVPAYFNDSQRQATKDA-GTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDG  236 (404)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHH-HHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCC
Confidence            35799999999999999998877 788999999999999999998873211    234569999999999997663  33


Q ss_pred             ee-cccCeEEecccHHHHHHHHHHHHh
Q 006876           94 EP-VYRGSCRTNIGGYHITDYLKQLLS  119 (627)
Q Consensus        94 ~~-i~~a~~rl~iGG~~lt~yL~~lL~  119 (627)
                      .. +.......++||.++++.|.+.|.
T Consensus       237 ~~~v~~~~~~~~lGG~~~d~~l~~~l~  263 (404)
T 3i33_A          237 IFEVKSTAGDTHLGGEDFDNRMVSHLA  263 (404)
T ss_dssp             EEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred             eEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            22 222234478999999999988774

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=98.83  E-value=5.8e-09  Score=117.20  Aligned_cols=98  Identities=12%  Similarity=0.009  Sum_probs=77.2

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCc--cCcceEEEecCCCceeeeeee--cCee-
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGI--CNKDGLAICPGFSTTHVIPFV--EGEP-   95 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~--~~~tGLVVDiG~~~T~IvPV~--dG~~-   95 (627)
                      ..++||.|...+...|+.+.+. ++..|++.+.+++.|.+|++++|....  ...+.+|||+|.+++.|+.+-  +|.. 
T Consensus       140 ~~~VitVPa~f~~~qr~a~~~A-~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~  218 (554)
T 1yuw_A          140 TNAVVTVPAYFNDSQRQATKDA-GTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFE  218 (554)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHH-HHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEE
T ss_pred             CeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEE
Confidence            4699999999999999988875 678899999999999999888872211  135789999999999998765  4643 


Q ss_pred             cccCeEEecccHHHHHHHHHHHHh
Q 006876           96 VYRGSCRTNIGGYHITDYLKQLLS  119 (627)
Q Consensus        96 i~~a~~rl~iGG~~lt~yL~~lL~  119 (627)
                      +.......++||.++++.|.++|.
T Consensus       219 v~a~~g~~~lGG~d~d~~l~~~l~  242 (554)
T 1yuw_A          219 VKSTAGDTHLGGEDFDNRMVNHFI  242 (554)
T ss_dssp             EEEEEEETTCSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222344568999999999988764

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=98.77  E-value=2e-08  Score=113.95  Aligned_cols=99  Identities=13%  Similarity=-0.065  Sum_probs=75.6

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCc-cCcceEEEecCCCceeeeeeec------C
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGI-CNKDGLAICPGFSTTHVIPFVE------G   93 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~-~~~tGLVVDiG~~~T~IvPV~d------G   93 (627)
                      ..++||.|.......|+.+.+. .+..|++.+.+++.|++|++++|.... ...+.+|+|+|.+++.|..+-.      |
T Consensus       136 ~~~VitVPa~f~d~qr~a~~~A-~~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g  214 (605)
T 2kho_A          136 TEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEK  214 (605)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHH-HHTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSC
T ss_pred             cEEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCC
Confidence            4689999999999999988877 467899999999999999888872211 1345799999999999987753      3


Q ss_pred             ee-cccCeEEecccHHHHHHHHHHHHhc
Q 006876           94 EP-VYRGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        94 ~~-i~~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      .. +.....-.++||.++++.|.++|..
T Consensus       215 ~~~v~a~~gd~~lGG~d~D~~l~~~l~~  242 (605)
T 2kho_A          215 TFEVLATNGDTHLGGEDFDSRLINYLVE  242 (605)
T ss_dssp             EEEEEEEEEESSCSGGGTHHHHHHHHHH
T ss_pred             eEEEEEECCCCCccHHHHHHHHHHHHHH
Confidence            22 1112234689999999999887754

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=98.65  E-value=3.7e-08  Score=113.20  Aligned_cols=99  Identities=14%  Similarity=0.079  Sum_probs=76.4

Q ss_pred             ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccC-------ccCcceEEEecCCCceeeeeee--
Q 006876           21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYG-------ICNKDGLAICPGFSTTHVIPFV--   91 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~-------~~~~tGLVVDiG~~~T~IvPV~--   91 (627)
                      ..++||.|...+...|+.+.+. .+..|++.+.+++.|+++.+++|...       ....+.+|||+|+++|.|.-+-  
T Consensus       139 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~  217 (675)
T 3d2f_A          139 TDVCIAVPPWYTEEQRYNIADA-ARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFK  217 (675)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHH-HHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEE
T ss_pred             ceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEec
Confidence            4699999999999999988875 56789999999999999988876211       1134689999999999887764  


Q ss_pred             cCee-cccCeEEecccHHHHHHHHHHHHhc
Q 006876           92 EGEP-VYRGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        92 dG~~-i~~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      +|.. +.....-.++||.++++.|.++|..
T Consensus       218 ~g~~~V~a~~gd~~lGG~d~D~~l~~~l~~  247 (675)
T 3d2f_A          218 KGQLKVLGTACDKHFGGRDFDLAITEHFAD  247 (675)
T ss_dssp             TTEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEcCCCCccHHHHHHHHHHHHHH
Confidence            4543 2222334689999999999887753

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=98.51  E-value=8.9e-08  Score=101.46  Aligned_cols=98  Identities=13%  Similarity=0.103  Sum_probs=72.8

Q ss_pred             HHHHHHHHhhhcCCCeEEeehhhhhhhhhcccc--CccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHH
Q 006876           36 RSKMAELLFETYGVPSVAFGVDAAFSYKYNQQY--GICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDY  113 (627)
Q Consensus        36 Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~--~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~y  113 (627)
                      .+.+.+ +++..|+.-+.+..+++++.+++|..  .......+|||+|+++|.|+.+.+|.++.  ...+++||.++|+.
T Consensus       153 v~~~~~-~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~--~~~~~~GG~~i~~~  229 (377)
T 2ych_A          153 VAGVLE-ALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA--VRVLTLSGKDFTEA  229 (377)
T ss_dssp             HHHHHH-HHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHHHHHH
T ss_pred             HHHHHH-HHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEE--EEeeechHHHHHHH
Confidence            344444 35788999999999999988876410  00123459999999999999999998875  57789999999999


Q ss_pred             HHHHHhccCCCCCCcccHHHHHHHHHhccccc
Q 006876          114 LKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIA  145 (627)
Q Consensus       114 L~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa  145 (627)
                      +.+-+         ..+...++.+|..+|++.
T Consensus       230 i~~~~---------~~~~~~aE~~K~~~~~~~  252 (377)
T 2ych_A          230 IARSF---------NLDLLAAEEVKRTYGMAT  252 (377)
T ss_dssp             HHHHT---------TCCHHHHHHHHHHTC---
T ss_pred             HHHHh---------CCCHHHHHHHHhhccccc
Confidence            88732         125678899999888754

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=98.38  E-value=1.4e-06  Score=93.38  Aligned_cols=100  Identities=12%  Similarity=-0.016  Sum_probs=73.9

Q ss_pred             cccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccC---ccCcceEEEecCCCceeeeee--ecCe
Q 006876           20 DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYG---ICNKDGLAICPGFSTTHVIPF--VEGE   94 (627)
Q Consensus        20 d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~---~~~~tGLVVDiG~~~T~IvPV--~dG~   94 (627)
                      ...+++|.|.......|+.+.+. .+.-|+..+.++..+.++.++++...   ....+.+|||+|.++|.+.-+  -+|.
T Consensus       150 ~~~~vitvPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~~~  228 (409)
T 4gni_A          150 VTSAVITIPTNFTEKQKAALIAA-AAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSGM  228 (409)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHH-HHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEETTE
T ss_pred             CCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeCCe
Confidence            45699999999999999887776 55679999999999999999887221   123468999999999988764  2332


Q ss_pred             ecccC-eEEecccHHHHHHHHHHHHhc
Q 006876           95 PVYRG-SCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        95 ~i~~a-~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      .-.-+ ..-.++||.++++.|.+.|..
T Consensus       229 ~~v~~~~~~~~lGG~~~d~~i~~~l~~  255 (409)
T 4gni_A          229 YTILATVHDYEYHGIALDKVLIDHFSK  255 (409)
T ss_dssp             EEEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCcCHHHHHHHHHHHHHH
Confidence            11111 234789999999999887753

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=98.19  E-value=4.1e-06  Score=90.97  Aligned_cols=101  Identities=13%  Similarity=0.182  Sum_probs=76.7

Q ss_pred             ChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHH
Q 006876           32 PVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHIT  111 (627)
Q Consensus        32 p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt  111 (627)
                      +....+.+... ++.-|+.-..+..+|+++.+++..........+|||+|+++|.|+-+.+|.+..  ...+++||.++|
T Consensus       166 ~~~~v~n~~~~-~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~--~~~i~~GG~~it  242 (419)
T 4a2a_A          166 PLKVYEMFYNF-LQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIK--ISYVPVGMKHVI  242 (419)
T ss_dssp             EHHHHHHHHHH-HHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEE--EEEESCCHHHHH
T ss_pred             eHHHHHHHHHH-HHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEE--EEecccHHHHHH
Confidence            34445555544 667788888899999998887751111123689999999999999999998876  467899999999


Q ss_pred             HHHHHHHhccCCCCCCcccHHHHHHHHHhcccc
Q 006876          112 DYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYI  144 (627)
Q Consensus       112 ~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyV  144 (627)
                      +-+...|.         .....++.+|.++..+
T Consensus       243 ~dIa~~l~---------~~~~~AE~iK~~~g~a  266 (419)
T 4a2a_A          243 KDVSAVLD---------TSFEESERLIITHGNA  266 (419)
T ss_dssp             HHHHHHHT---------CCHHHHHHHHHHHCCS
T ss_pred             HHHHHHHC---------CCHHHHHHHHHHhccC
Confidence            99987653         2678899999987654

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=98.06  E-value=1.1e-05  Score=91.63  Aligned_cols=106  Identities=15%  Similarity=-0.008  Sum_probs=77.2

Q ss_pred             hhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccC-ccCcceEEEecCCCceeee
Q 006876           10 DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYG-ICNKDGLAICPGFSTTHVI   88 (627)
Q Consensus        10 ~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~-~~~~tGLVVDiG~~~T~Iv   88 (627)
                      ..|+..    -..++||.|.......|+.+.+. .+..|++.+.+++.|.+|++++|... ....+-+|+|+|.+++.|.
T Consensus       129 ~~lg~~----v~~~VITVPa~f~~~qr~a~~~A-a~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvs  203 (605)
T 4b9q_A          129 DYLGEP----VTEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDIS  203 (605)
T ss_dssp             HHHTSC----CCEEEEEECTTCCHHHHHHHHHH-HHHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEE
T ss_pred             HHhCCC----CCeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEE
Confidence            346644    34689999999999999887766 56789999999999999998887221 1134578999999999887


Q ss_pred             eeecCe------e-cccCeEEecccHHHHHHHHHHHHhc
Q 006876           89 PFVEGE------P-VYRGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        89 PV~dG~------~-i~~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      -+--+.      . +.....-.++||.++++.|.++|..
T Consensus       204 i~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l~~  242 (605)
T 4b9q_A          204 IIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE  242 (605)
T ss_dssp             EEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHHHHH
Confidence            664332      1 1111223578999999999887753

>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*

Probab=97.30  E-value=0.00052  Score=72.30  Aligned_cols=102  Identities=17%  Similarity=0.072  Sum_probs=75.5

Q ss_pred             cccEE--EEeCCCCChHHHHHHHHHHhhh-------------cCCCeEEeehhhhhhhhhc--ccc-CccCcceEEEecC
Q 006876           20 DHPVL--ITECVCNPVHSRSKMAELLFET-------------YGVPSVAFGVDAAFSYKYN--QQY-GICNKDGLAICPG   81 (627)
Q Consensus        20 d~pVL--LTEp~~~p~~~Rekl~EvLFE~-------------f~vpsv~~~~~a~lslya~--G~~-~~~~~tGLVVDiG   81 (627)
                      ...++  ++-|.......|+.+.+.+...             +++..+.+.+++++|++++  +.. .....+-+|||+|
T Consensus       119 ~~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~l~~~~~~~~~~~vlVvDIG  198 (346)
T 2fsj_A          119 PVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVG  198 (346)
T ss_dssp             CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHHHHTSSCCCSSEEEEEEEC
T ss_pred             ceEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHHHHHHhhccccccccCCcEEEEECC
Confidence            34588  8888877777888888876542             2356789999999988874  300 0011345999999


Q ss_pred             CCceeeeeee--cCeecccCeEEecccHHHHHHHHHHHHhcc
Q 006876           82 FSTTHVIPFV--EGEPVYRGSCRTNIGGYHITDYLKQLLSLK  121 (627)
Q Consensus        82 ~~~T~IvPV~--dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r  121 (627)
                      +++|.|+-+.  +|.++......+++||.++++.+.+.+..+
T Consensus       199 gGTtDv~vi~~~~g~~v~~~s~~~~lGg~~i~~~I~~~i~~~  240 (346)
T 2fsj_A          199 SRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKE  240 (346)
T ss_dssp             SSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEEecCCEEEeecCCCcchhHHHHHHHHHHHHHHH
Confidence            9999999887  677666556888999999999887766543

>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}

Probab=96.46  E-value=0.0041  Score=65.85  Aligned_cols=102  Identities=14%  Similarity=-0.019  Sum_probs=75.9

Q ss_pred             ccEEEEeCCCCChHHH-HHHHHHHhhh-----------cCCCeEEeehhhhhhhhhccccCc------cCcceEEEecCC
Q 006876           21 HPVLITECVCNPVHSR-SKMAELLFET-----------YGVPSVAFGVDAAFSYKYNQQYGI------CNKDGLAICPGF   82 (627)
Q Consensus        21 ~pVLLTEp~~~p~~~R-ekl~EvLFE~-----------f~vpsv~~~~~a~lslya~G~~~~------~~~tGLVVDiG~   82 (627)
                      ..|++.-|.-.....| +.+.+.+...           +.|..|.+.++++.|+|+.+....      .....+|||+|+
T Consensus       114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGg  193 (355)
T 3js6_A          114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGS  193 (355)
T ss_dssp             EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECS
T ss_pred             EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCC
Confidence            3466666665555555 5777776532           334789999999999998751110      135678999999


Q ss_pred             CceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccC
Q 006876           83 STTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKH  122 (627)
Q Consensus        83 ~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~  122 (627)
                      ++|.++.+.+|.++...+..+++||..+++-+.+.|..++
T Consensus       194 gTtd~~v~~~~~~~~~~s~s~~~G~~~~~~~i~~~l~~~~  233 (355)
T 3js6_A          194 GTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASHVSKKS  233 (355)
T ss_dssp             SCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHTC---
T ss_pred             CcEEEEEEcCCEEccccccCcchHHHHHHHHHHHHHHHhc
Confidence            9999999988888888888999999999999999998764

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=96.29  E-value=0.0037  Score=64.66  Aligned_cols=92  Identities=16%  Similarity=0.016  Sum_probs=67.7

Q ss_pred             hhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCee-cccCeEEecccHHHHHHHHHHHHhccCC
Q 006876           45 ETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEP-VYRGSCRTNIGGYHITDYLKQLLSLKHP  123 (627)
Q Consensus        45 E~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~-i~~a~~rl~iGG~~lt~yL~~lL~~r~~  123 (627)
                      +.++|..+.+.++++.++++.+.......+.+|||+|+++|.++-+.+|.+ +......+++||.++++-+.+.|..+  
T Consensus       136 ~~~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~--  213 (320)
T 2zgy_A          136 DTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLA--  213 (320)
T ss_dssp             CCCEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTCC--
T ss_pred             cEEEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHHHHHc--
Confidence            345667899999999988876411111356799999999999999998876 44345677999999999999988754  


Q ss_pred             CCCCcccHHHHHHH-HHh
Q 006876          124 QHMTKLTWEKVEDL-KME  140 (627)
Q Consensus       124 ~~~~~~~~~~ve~I-KE~  140 (627)
                      ..  .++...++++ |..
T Consensus       214 ~~--~i~~~~ae~~lk~~  229 (320)
T 2zgy_A          214 RT--KGSSYLADDIIIHR  229 (320)
T ss_dssp             SB--GGGHHHHHHHHHTT
T ss_pred             CC--CCCHHHHHHHHHHh
Confidence            22  3455667777 554

>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}

Probab=95.87  E-value=0.0056  Score=63.97  Aligned_cols=99  Identities=7%  Similarity=-0.017  Sum_probs=72.3

Q ss_pred             ccEEEEeCCCCCh--HHHHHHHHHHhhh-------------cCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCce
Q 006876           21 HPVLITECVCNPV--HSRSKMAELLFET-------------YGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTT   85 (627)
Q Consensus        21 ~pVLLTEp~~~p~--~~Rekl~EvLFE~-------------f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T   85 (627)
                      ..|++.-|...-.  ..|+.+.+.|-..             +.|..|.+.++++.++|.... .-...+.+|||+|+++|
T Consensus       106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~~-~~~~~~v~vvDiGggTt  184 (329)
T 4apw_A          106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQE-NFKNKNVAVIDFGGLNM  184 (329)
T ss_dssp             EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSCC-CCTTCEEEEEEECSSCE
T ss_pred             EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcch-hhccCCEEEEEeCCCcE
Confidence            3455555544332  3577777776631             234578889999998887520 01135679999999999


Q ss_pred             eeeeeecCeecccCeEEecccHHHHHHHHHHHHhc
Q 006876           86 HVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL  120 (627)
Q Consensus        86 ~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~  120 (627)
                      .++-+.+|.++...+..+++||.++++.+.+.|..
T Consensus       185 d~~v~~~g~~~~~~~~~~~~G~~~~~~~i~~~l~~  219 (329)
T 4apw_A          185 GFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALTD  219 (329)
T ss_dssp             EEEEEETTEECGGGCEEESCCHHHHHHHHHTSSSS
T ss_pred             EEEEEECCEEeeccccchhhHHHHHHHHHHHHHHh
Confidence            99999999998777788999999999999887776

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=93.78  E-value=0.014  Score=58.84  Aligned_cols=65  Identities=18%  Similarity=0.297  Sum_probs=49.6

Q ss_pred             CccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeecccccc
Q 006876          518 GLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA  595 (627)
Q Consensus       518 gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilA  595 (627)
                      ++.+.|...+..     .-.+......|||+||.|..|++.++|++.+.        .+++.+++|.+.+-+||+++|
T Consensus       188 ~~~~~v~~~l~~-----~~~~~~~~~~vvl~GGva~n~~lr~~l~~~~g--------~~~~~p~~p~~~~A~GAAl~A  252 (276)
T 4ehu_A          188 GIHTSVAKRVSS-----LVKRIGVQRNVVMVGGVARNSGIVRAMAREIN--------TEIIVPDIPQLTGALGAALYA  252 (276)
T ss_dssp             HHHHHHHHHHHH-----HHHHHCCCSSEEEESGGGGCHHHHHHHHHHHT--------SCEECCSSGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----HHHhcccCCeEEEecCccchHHHHHHHHHHHC--------CCeeeCCCcchHHHHHHHHHH
Confidence            455555555542     23355567899999999999999999987662        357778899999889999987

>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A

Probab=91.36  E-value=0.76  Score=51.20  Aligned_cols=98  Identities=11%  Similarity=-0.012  Sum_probs=66.6

Q ss_pred             HHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHH
Q 006876           37 SKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQ  116 (627)
Q Consensus        37 ekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~  116 (627)
                      +.+...+=.+++++-=.=..++.+|.+++=.......-.++||+|.++|.+.-+.+|..+.  ...+++||.++|.-+..
T Consensus       371 ~NI~~cVer~~gL~veV~g~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~--a~~ip~gG~~VT~DIA~  448 (610)
T 2d0o_A          371 AMIAREIEQKLNIDVQIGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDII--ATHLAGAGDMVTMIIAR  448 (610)
T ss_dssp             HHHHHHHHHHHCCEEEEEEEHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEE--EEEEECSHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCcceeccccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE--EEEeccchHHHHHHHHH
Confidence            3445444445555211111455666555431111234578999999999999999998876  67899999999999988


Q ss_pred             HHhccCCCCCCcccHHHHHHHHHhccccc
Q 006876          117 LLSLKHPQHMTKLTWEKVEDLKMEHCYIA  145 (627)
Q Consensus       117 lL~~r~~~~~~~~~~~~ve~IKE~~CyVa  145 (627)
                      -|.-.        +...+|+||. |..+-
T Consensus       449 ~Lgt~--------d~~~AErIK~-YG~A~  468 (610)
T 2d0o_A          449 ELGLE--------DRYLAEEIKK-YPLAK  468 (610)
T ss_dssp             HHTCC--------CHHHHHHHHH-SCEEE
T ss_pred             HhCCC--------CHHHHHHhcc-cCcee
Confidence            87531        4889999999 66554

>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6

Probab=91.16  E-value=0.45  Score=53.11  Aligned_cols=79  Identities=14%  Similarity=0.054  Sum_probs=58.9

Q ss_pred             hhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 006876           56 VDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVE  135 (627)
Q Consensus        56 ~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve  135 (627)
                      .++.+|.+++=.......-.++||+|.++|.+.-+.+|..+.  ...+++||.++|.-+..-|.-.        +...+|
T Consensus       392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~--a~~ip~gG~~VT~DIA~~Lg~~--------d~~~AE  461 (607)
T 1nbw_A          392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQIT--AVHLAGAGNMVSLLIKTELGLE--------DLSLAE  461 (607)
T ss_dssp             CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEE--EEEEECCHHHHHHHHHHHHTCS--------CHHHHH
T ss_pred             ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE--EEEeccchHHHHHHHHHHhCCC--------CHHHHH
Confidence            455555555421111234578999999999999999988876  6789999999999998887531        488999


Q ss_pred             HHHHhccccc
Q 006876          136 DLKMEHCYIA  145 (627)
Q Consensus       136 ~IKE~~CyVa  145 (627)
                      +||. |..+-
T Consensus       462 rIK~-YG~A~  470 (607)
T 1nbw_A          462 AIKK-YPLAK  470 (607)
T ss_dssp             HHHH-SCEEE
T ss_pred             Hhcc-cCcee
Confidence            9999 66554

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=82.75  E-value=0.26  Score=50.73  Aligned_cols=71  Identities=13%  Similarity=0.035  Sum_probs=50.6

Q ss_pred             CccHHHHHhcccCCCCChhhHHhccCCeEEecC-CCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeecccccc
Q 006876          518 GLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGG-CCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA  595 (627)
Q Consensus       518 gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG-~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilA  595 (627)
                      ||..+|.+.|..+ +|-...+.. ..+|+++|| .+..|++.++|.+.+...     ..+++.+++++|..-+||+++|
T Consensus       215 sl~~sV~~~I~~l-a~~~a~~~~-i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-----~~~~~~p~~~~~~gAlGAaL~~  286 (287)
T 2ews_A          215 AVIGVVGEVVTTM-AITVAREFK-TENIVYIGSSFHNNALLRKVVEDYTVLR-----GCKPYYVENGAFSGAIGALYLE  286 (287)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHTT-CCEEEEESGGGTTCHHHHHHHHHHHHHT-----TCEEEECTTGGGHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHH-HHHHHHhCC-CCeEEEeCCchhcCHHHHHHHHHHHhhC-----CceEEECCCccHHHHHHHHHhC
Confidence            5666666666432 111111223 358999999 999999999999776542     4688889999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	627
d2fxua2	225	c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI	8e-27
d2fxua2	225	c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI	4e-16
d1k8ka2	258	c.55.1.1 (A:161-418) Actin-related protein 3, Arp3	2e-17
d1k8ka2	258	c.55.1.1 (A:161-418) Actin-related protein 3, Arp3	4e-16
d1k8kb1	190	c.55.1.1 (B:154-343) Actin-related protein 2, Arp2	4e-17
d1k8kb1	190	c.55.1.1 (B:154-343) Actin-related protein 2, Arp2	7e-14
d1k8ka1	158	c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {	5e-12
d2fxua1	140	c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId:	2e-11

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  106 bits (266), Expect = 8e-27
 Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 12/199 (6%)

Query: 420 FGAKDEDWQLYKLMSRDNDDDDEEMDENEAELAR-ISARLQEVDPTFVPKQESGPTQSAA 478
              +D    L K+++         +   E E+ R I  +L  V   F  +  +  + S+ 
Sbjct: 34  LAGRDLTDYLMKILTERGYS---FVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSL 90

Query: 479 EIPRVRPLTKEDFQ-IVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDL 537
           E     P    D Q I +G ERFRCPE LF+P+++G++  G+ E T  SI +    D D+
Sbjct: 91  EKSYELP----DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMK---CDIDI 143

Query: 538 EQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 597
            + L ++ +M+GG  ++PG+++R++  I  + P    IK++   +     W G S+ A+ 
Sbjct: 144 RKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203

Query: 598 LQFPQQTFSRMDYYEKGEN 616
             F Q   ++ +Y E G +
Sbjct: 204 STFQQMWITKQEYDEAGPS 222

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (185), Expect = 4e-16
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 75  GLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKV 134
           G+ +  G   TH +P  EG  +     R ++ G  +TDYL ++L+ +    +T    E V
Sbjct: 4   GIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIV 63

Query: 135 EDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLP 172
            D+K + CY+A D+ +E       +       + ++LP
Sbjct: 64  RDIKEKLCYVALDFENEMATAASSSS----LEKSYELP 97

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.2 bits (197), Expect = 2e-17
 Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 25/221 (11%)

Query: 420 FGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFV---PKQESGPTQS 476
              +D  + + +L+         E     A+   +  R   V P  V    K ++  ++ 
Sbjct: 35  IAGRDITYFIQQLLRDREVGIPPEQSLETAK--AVKERYSYVCPDLVKEFNKYDTDGSKW 92

Query: 477 AAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQV-GLDEMTGVSIRRLPTKDE 535
             +   +  ++K++F I +G ERF  PEI F P +   D    + E+    I+  P    
Sbjct: 93  IKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCP---I 149

Query: 536 DLEQRLTSSILMTGGCCLFPGMSERLEAGIRM----------------IRPCGAPIKVVR 579
           D+ + L  +I+++GG  +F     RL+  ++                 ++P    ++V+ 
Sbjct: 150 DVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVIT 209

Query: 580 ALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRR 620
                   W G S+ A+  +F Q   ++ DY E G +  R 
Sbjct: 210 HHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRH 250

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.3 bits (187), Expect = 4e-16
 Identities = 23/89 (25%), Positives = 36/89 (40%)

Query: 75  GLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKV 134
           G  I  G   THVIP  EG  +        I G  IT +++QLL  +      + + E  
Sbjct: 5   GTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETA 64

Query: 135 EDLKMEHCYIAPDYFSEAQLFQKGTKEAE 163
           + +K  + Y+ PD   E   +     +  
Sbjct: 65  KAVKERYSYVCPDLVKEFNKYDTDGSKWI 93

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.5 bits (190), Expect = 4e-17
 Identities = 27/92 (29%), Positives = 42/92 (45%)

Query: 75  GLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKV 134
           G+ +  G   TH+ P  EG  +   + R +I G  IT YL +LL L+         +E V
Sbjct: 1   GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETV 60

Query: 135 EDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKT 166
             +K + CY+  +   E +L  + T   E  T
Sbjct: 61  RMIKEKLCYVGYNIEQEQKLALETTVLVESYT 92

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.2 bits (166), Expect = 7e-14
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 8/151 (5%)

Query: 420 FGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE 479
              +D    L KL+       +   D        I  +L  V      +Q+     +   
Sbjct: 31  IAGRDITRYLIKLLLLRGYAFNHSADFETVR--MIKEKLCYVGYNIEQEQKLALETTVLV 88

Query: 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQ 539
                P   +   I +G ERF  PE LF+P+ + ++ VG+ E+   +I+     D D   
Sbjct: 89  ESYTLP---DGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAA---DIDTRS 142

Query: 540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRP 570
                I+++GG  ++PG+  RLE  ++ +  
Sbjct: 143 EFYKHIVLSGGSTMYPGLPSRLERELKQLYL 173

>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.0 bits (150), Expect = 5e-12
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           ME  ++    +      E DH  L+TE   N   +R   AE++FE++ VP +   V A  
Sbjct: 87  MERFMEQVIFKYLRAEPE-DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVL 145

Query: 61  S 61
           +
Sbjct: 146 A 146

>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (145), Expect = 2e-11
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 1   MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF 60
           ME I    F        E +HP L+TE   NP  +R KM +++FET+ VP++   + A  
Sbjct: 76  MEKIWHHTFYNELRVAPE-EHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVL 134

Query: 61  S 61
           S
Sbjct: 135 S 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	627
d2fxua2	225	Actin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1k8ka2	258	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	100.0
d1k8kb1	190	Actin-related protein 2, Arp2 {Cow (Bos taurus) [T	100.0
d1k8ka1	158	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	99.48
d2fxua1	140	Actin {Cow (Bos taurus) [TaxId: 9913]}	99.43
d1e4ft2	191	Cell division protein FtsA {Thermotoga maritima [T	98.44
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	97.07
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	92.73
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	90.57
d2zgya2	163	Plasmid segregation protein ParM {Escherichia coli	90.22
d2fsja1	161	Hypothetical protein Ta0583 {Archaeon Thermoplasma	89.48
d2zgya2	163	Plasmid segregation protein ParM {Escherichia coli	84.67
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	82.64
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	80.09

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-50  Score=400.69  Aligned_cols=127  Identities=31%  Similarity=0.643  Sum_probs=123.4

Q ss_pred             CcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHHHHHHHHHhhc
Q 006876          490 DFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIR  569 (627)
Q Consensus       490 ~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~  569 (627)
                      ++.|.++.|||.+||+||+|..+|.+..||+++|.+||.+   ||+|+|+.|++|||||||+|+||||.+||++||..+.
T Consensus        99 g~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~---~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~  175 (225)
T d2fxua2          99 GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMK---CDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA  175 (225)
T ss_dssp             SCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHT---SCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHS
T ss_pred             CCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhc---CCcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhh
Confidence            4789999999999999999999999999999999999995   7999999999999999999999999999999999999


Q ss_pred             CCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHH
Q 006876          570 PCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLR  619 (627)
Q Consensus       570 p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~  619 (627)
                      |...+++|+.+++|++++|+|||++|++++|+++||||+||+|+|++|||
T Consensus       176 ~~~~~~~v~~~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         176 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             CTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             ccccceEEecCCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            99999999999999999999999999999999999999999999999985

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-49  Score=401.57  Aligned_cols=133  Identities=26%  Similarity=0.451  Sum_probs=123.3

Q ss_pred             CcEEEcCcccccccccCcCCCCCCCC-CCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHHHHHHHHHhh
Q 006876          490 DFQIVLGVERFRCPEILFRPNWVGID-QVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMI  568 (627)
Q Consensus       490 ~~~I~lg~Erf~~pE~LF~Psl~g~~-~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l  568 (627)
                      ++.|.++.|||.+||+||+|+.+|.+ ..||+++|.+||.+   ||+|+|+.|++||+|+||+|++|||.+||++||..+
T Consensus       106 ~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~---~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~  182 (258)
T d1k8ka2         106 EFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQN---CPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRT  182 (258)
T ss_dssp             EEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHH---SCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHH
T ss_pred             CeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHh---ccHHhhHHHHhCEEEecCcccCCCHHHHHHHHHHhh
Confidence            47899999999999999999999986 57999999999995   699999999999999999999999999999999865


Q ss_pred             c----------------CCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHH-HhccCc
Q 006876          569 R----------------PCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLR-RYQLQY  625 (627)
Q Consensus       569 ~----------------p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~-~k~~~~  625 (627)
                      +                |..++++|+++++|.|++|+|||++|++++|+++||||+||+|+|++||+ ||||+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~l~~f~~~~Itk~eY~E~G~~iv~~rk~f~~  256 (258)
T d1k8ka2         183 VDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGV  256 (258)
T ss_dssp             HHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCCCCSC
T ss_pred             cchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHcCccHHhheecHHHHhhhChHHHhcCCCcCC
Confidence            4                45667899999999999999999999999999999999999999999994 789986

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.4e-35  Score=283.42  Aligned_cols=79  Identities=30%  Similarity=0.587  Sum_probs=75.9

Q ss_pred             CcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHHHHHHHHHhhc
Q 006876          490 DFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIR  569 (627)
Q Consensus       490 ~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~  569 (627)
                      ++.|.++.|||.+||+||+|+.+|.+..||+++|.+||.+   ||+|+|+.|++|||||||+|+||||.+||++||++++
T Consensus        96 g~~i~i~~er~~~~E~lF~p~~~~~~~~~l~~~i~~si~~---c~~d~r~~L~~NIvl~GG~Sl~pGf~~RL~~EL~~l~  172 (190)
T d1k8kb1          96 GRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQA---ADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLY  172 (190)
T ss_dssp             SCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHH---SCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHH
T ss_pred             CcEEEEChhhccccccccChhhcCcccccHHHHHHHHHHh---CCHhHHHHHHcCEEEECcccCCCCHHHHHHHHHHHhh
Confidence            5789999999999999999999999999999999999995   6999999999999999999999999999999999998


Q ss_pred             CC
Q 006876          570 PC  571 (627)
Q Consensus       570 p~  571 (627)
                      |.
T Consensus       173 p~  174 (190)
T d1k8kb1         173 LE  174 (190)
T ss_dssp             HH
T ss_pred             hH
Confidence            84

>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.48  E-value=1.1e-14  Score=135.73  Aligned_cols=68  Identities=28%  Similarity=0.365  Sum_probs=63.6

Q ss_pred             CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcce
Q 006876            1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDG   75 (627)
Q Consensus         1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tG   75 (627)
                      ||.||+|+|. .|+++  |.+||||||||+++|+..|++++|+|||+|+||+++++.+++||+||+|     ++|+
T Consensus        87 ~e~l~~~~~~~~l~v~--~~~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g-----~~~~  155 (158)
T d1k8ka1          87 MERFMEQVIFKYLRAE--PEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASW-----TSRQ  155 (158)
T ss_dssp             HHHHHHHHHHTTTCCC--GGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGG-----GSTT
T ss_pred             HHHHHHHHHHHhcccC--CCCCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCC-----CCCC
Confidence            5899999974 79999  8999999999999999999999999999999999999999999999999     6654

>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.43  E-value=5.8e-14  Score=127.82  Aligned_cols=64  Identities=34%  Similarity=0.562  Sum_probs=61.3

Q ss_pred             CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhcc
Q 006876            1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQ   66 (627)
Q Consensus         1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G   66 (627)
                      +|.+|+|+|. .|+++  |.++|||||||+++|+..|++++|+|||.|+||+++++.+++||+|++|
T Consensus        76 ~e~~~~~~~~~~l~~~--~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G  140 (140)
T d2fxua1          76 MEKIWHHTFYNELRVA--PEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG  140 (140)
T ss_dssp             HHHHHHHHHHTTSCCC--GGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred             HHHHHHHhhhhhcccC--CCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence            4889999996 79999  8999999999999999999999999999999999999999999999987

>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=3.4e-07  Score=86.52  Aligned_cols=62  Identities=19%  Similarity=0.328  Sum_probs=53.5

Q ss_pred             ceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcccccc
Q 006876           74 DGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAP  146 (627)
Q Consensus        74 tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~  146 (627)
                      ..+|||+|++.|.|+.+.+|.++.  .+.+++||.++|+.|...|.         ++...+++||.++..+..
T Consensus         8 Gv~vvDiG~~tt~i~i~~~G~l~~--~~~i~~GG~~iT~~Ia~~l~---------i~~~~AE~iK~~~g~~~~   69 (191)
T d1e4ft2           8 GVVVVNLGYNFTGLIAYKNGVPIK--ISYVPVGMKHVIKDVSAVLD---------TSFEESERLIITHGNAVY   69 (191)
T ss_dssp             CEEEEEECSSCEEEEEEETTEEEE--EEEESCCHHHHHHHHHHHHT---------CCHHHHHHHHHHHCCSCC
T ss_pred             CEEEEEeCCCcEEEEEEECCeEEE--EEEEeeChHHHHHHHHHHhc---------ccHHHHHHHHhhcccccc
Confidence            468999999999999999999987  57789999999999988774         367889999999877653

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=9.9e-05  Score=67.70  Aligned_cols=67  Identities=22%  Similarity=0.408  Sum_probs=51.1

Q ss_pred             ccHHHHHhcccCCCCChhhHH-hccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccC
Q 006876          519 LDEMTGVSIRRLPTKDEDLEQ-RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT  596 (627)
Q Consensus       519 L~e~I~~sI~~~~~c~~d~r~-~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAs  596 (627)
                      +...|..++..+   ...... .....|+||||+|.+||+.++|++.+.        ..|....+|..+++.||+++++
T Consensus       117 ~~~~i~~~l~~~---~~~~~~~~~~~~IvLvGGsS~ip~v~~~l~~~fg--------~~v~~~~~P~~aVA~GAai~~~  184 (196)
T d1jcea2         117 IVESVRTTLEKT---PPELVSDIIERGIFLTGGGSLLRGLDTLLQKETG--------ISVIRSEEPLTAVAKGAGMVLD  184 (196)
T ss_dssp             HHHHHHHHHHTS---CHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHS--------SCEEECSSTTTHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHh---hccccccccccceEEeCchhcchhHHHHHHHHHC--------cCCccCCChHHHHHHHHHHHHH
Confidence            667777788754   444433 334679999999999999999998763        2355567999999999998764

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=92.73  E-value=0.01  Score=55.16  Aligned_cols=66  Identities=14%  Similarity=0.177  Sum_probs=48.1

Q ss_pred             CccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccC
Q 006876          518 GLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT  596 (627)
Q Consensus       518 gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAs  596 (627)
                      .+.++|..++.+.   ..+..  =...|+|+||+|.+|++.++|++-+..        .+....||..++-.||++.|.
T Consensus       130 ~~~~~i~~~l~~a---~~~~~--~Id~v~lvGG~sr~p~l~~~i~~~f~~--------~~~~~~~p~~aVa~GAa~~aa  195 (198)
T d1dkgd2         130 RSIELLKVALQDA---GLSVS--DIDDVILVGGQTRMPMVQKKVAEFFGK--------EPRKDVNPDEAVAIGAAVQGG  195 (198)
T ss_dssp             HHHHHHHHHHHTT---TCCTT--TCCEEEEESGGGGSHHHHHHHHHHHSS--------CCBCSSCTTTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh---CCChh--HCcEEEEEcCccCCHHHHHHHHHHHCC--------CCCCCCChHHHHHHHHHHHHH
Confidence            4667777777643   22222  256799999999999999999988632        233445788899999999875

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.57  E-value=0.018  Score=52.89  Aligned_cols=48  Identities=21%  Similarity=0.312  Sum_probs=37.1

Q ss_pred             cCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccC
Q 006876          542 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT  596 (627)
Q Consensus       542 ~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAs  596 (627)
                      ...|+|+||+|.+|.+.+.|.+-+..       ..|..+.||..++-.||+++|.
T Consensus       143 i~~V~lvGG~sr~p~v~~~i~~~f~~-------~~i~~~~~p~~aVa~GaA~~aa  190 (193)
T d1bupa2         143 IHDIVLVGGSTRIPKIQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAA  190 (193)
T ss_dssp             CCEEEEESGGGGCHHHHHHHHHHTTT-------CCCBCSSCGGGHHHHHHHHHHH
T ss_pred             CCEEEEECCccccHHHHHHHHHHcCC-------CCCCCCCChHHHHHHHHHHHHH
Confidence            46799999999999998888755431       1244455888999999998874

>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=90.22  E-value=0.12  Score=44.94  Aligned_cols=50  Identities=20%  Similarity=0.059  Sum_probs=38.6

Q ss_pred             CcceEEEecCCCceeeeeeecCeeccc-CeEEecccHHHHHHHHHHHHhcc
Q 006876           72 NKDGLAICPGFSTTHVIPFVEGEPVYR-GSCRTNIGGYHITDYLKQLLSLK  121 (627)
Q Consensus        72 ~~tGLVVDiG~~~T~IvPV~dG~~i~~-a~~rl~iGG~~lt~yL~~lL~~r  121 (627)
                      ..+-||||+|+++|.++.+-.|.+... .....++||.++++.+.+.|...
T Consensus         6 ~~~ilViDiGggTtDi~v~~~~~~~~~~~~~~~~~G~~~i~~~i~~~l~~~   56 (163)
T d2zgya2           6 LDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLA   56 (163)
T ss_dssp             TCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCCcEEEEEEcCCeEEEEEeeccccccchHHHHHHHHhhHHh
Confidence            457899999999999987665555433 34456899999999998888653

>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.48  E-value=0.17  Score=44.12  Aligned_cols=51  Identities=25%  Similarity=0.181  Sum_probs=39.5

Q ss_pred             CcceEEEecCCCceeeeeeecC--eecccCeEEecccHHHHHHHHHHHHhccC
Q 006876           72 NKDGLAICPGFSTTHVIPFVEG--EPVYRGSCRTNIGGYHITDYLKQLLSLKH  122 (627)
Q Consensus        72 ~~tGLVVDiG~~~T~IvPV~dG--~~i~~a~~rl~iGG~~lt~yL~~lL~~r~  122 (627)
                      ..+.+|||+|+++|.++-+..|  .+........+.|+.++...+.+.|..++
T Consensus         5 ~g~~lviDIG~gTtDi~v~~~~~~~~~~~~~~~~~~g~~~i~~~i~~~i~~~~   57 (161)
T d2fsja1           5 PGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKET   57 (161)
T ss_dssp             SSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCcCeEEEEEEECCCeEEEEEEeccHhHHHHHHHHHHHHHHHHHH
Confidence            3468999999999999888654  44555556788999999998887776543

>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=84.67  E-value=0.095  Score=45.73  Aligned_cols=48  Identities=8%  Similarity=0.176  Sum_probs=34.9

Q ss_pred             cCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccC
Q 006876          542 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT  596 (627)
Q Consensus       542 ~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAs  596 (627)
                      +.+|+|+||+|.+      ++..|+...+.. +.+|..+++|+++.-.|.-++++
T Consensus       116 ~~~iil~GGGs~l------l~~~lk~~~~~~-~~~v~i~~~P~~A~a~G~~~~g~  163 (163)
T d2zgya2         116 YTHVMVIGGGAEL------ICDAVKKHTQIR-DERFFKTNNSQYDLVNGMYLIGN  163 (163)
T ss_dssp             CCEEEEESTTHHH------HHHHHHHTSCCC-GGGEECCSCGGGHHHHHHHHHHC
T ss_pred             cceEEEECchHHH------HHHHHHHHhCCC-CCCeEECCCcHhHHHHHHHHhcC
Confidence            5789999999854      455555554422 34677788999999999877653

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=82.64  E-value=0.12  Score=47.69  Aligned_cols=46  Identities=26%  Similarity=0.414  Sum_probs=37.8

Q ss_pred             CCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccC
Q 006876          543 SSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT  596 (627)
Q Consensus       543 ~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAs  596 (627)
                      ..||++||.+..++|.++|++.|.        ..|+.++.+.++.-+||+++|-
T Consensus       209 ~~Iv~gGGv~~~~~~~~~l~~~l~--------~~i~~~~~~~~agaiGAA~lA~  254 (259)
T d1huxa_         209 KDVVMTGGVAQNYGVRGALEEGLG--------VEIKTSPLAQYNGALGAALYAY  254 (259)
T ss_dssp             SSEEEESGGGGCHHHHHHHHHHHC--------SCEECCGGGGGHHHHHHHHHHH
T ss_pred             CcEEEEccccccHHHHHHHHHHHC--------CCEEcCCCccHHHHHHHHHHHH
Confidence            459999999999999999987772        3577777788887899998873

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=80.09  E-value=1.1  Score=39.23  Aligned_cols=68  Identities=18%  Similarity=0.116  Sum_probs=46.8

Q ss_pred             CcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcccc
Q 006876           72 NKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYI  144 (627)
Q Consensus        72 ~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyV  144 (627)
                      ....||+|+|.++|.|.-+..|.+..  ...++.||.+++.-+...+...+..   .........++......
T Consensus         6 ~~gvlV~DiGGGT~Dvsi~~~g~~~~--~~~~~~gg~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   73 (196)
T d1jcea2           6 PSGNMVVDIGGGTTEVAVISLGSIVT--WESIRIAGDEMDEAIVQYVRETYRV---AIGERTAERVKIEIGNV   73 (196)
T ss_dssp             SSCEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHHHHHHHHHHHHHHHCE---ECCHHHHHHHHHHHCBC
T ss_pred             CCceEEEEcCCCcEEEEEEEcCCEeE--EeeecCCCcccccchhhhhhhhhcc---cccchhHHHHHHHHhhh
Confidence            35679999999999998888787655  3567899999998888777654321   22334444444444443