Citrus Sinensis ID: 006878
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 627 | 2.2.26 [Sep-21-2011] | |||||||
| Q9XGM2 | 720 | Double-strand break repai | yes | no | 0.952 | 0.829 | 0.811 | 0.0 | |
| Q9W6K1 | 711 | Double-strand break repai | N/A | no | 0.937 | 0.827 | 0.398 | 1e-113 | |
| P49959 | 708 | Double-strand break repai | yes | no | 0.728 | 0.645 | 0.453 | 1e-112 | |
| Q60HE6 | 707 | Double-strand break repai | N/A | no | 0.803 | 0.712 | 0.425 | 1e-112 | |
| Q9JIM0 | 706 | Double-strand break repai | yes | no | 0.947 | 0.841 | 0.385 | 1e-109 | |
| Q61216 | 706 | Double-strand break repai | yes | no | 0.950 | 0.844 | 0.386 | 1e-109 | |
| Q9IAM7 | 700 | Double-strand break repai | yes | no | 0.752 | 0.674 | 0.425 | 1e-106 | |
| Q9UVN9 | 731 | Double-strand break repai | N/A | no | 0.730 | 0.626 | 0.420 | 1e-105 | |
| Q9C291 | 739 | Double-strand break repai | N/A | no | 0.712 | 0.604 | 0.430 | 1e-104 | |
| Q09683 | 649 | DNA repair protein rad32 | yes | no | 0.746 | 0.721 | 0.4 | 1e-101 |
| >sp|Q9XGM2|MRE11_ARATH Double-strand break repair protein MRE11 OS=Arabidopsis thaliana GN=MRE11 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1048 bits (2710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/615 (81%), Positives = 553/615 (89%), Gaps = 18/615 (2%)
Query: 6 REDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65
RED ++T+R+LVATDCHLGYMEKDEIRRHDSF+AFEEICSIAE+K+VDF+LLGGDLFHEN
Sbjct: 3 REDFSDTLRVLVATDCHLGYMEKDEIRRHDSFKAFEEICSIAEEKQVDFLLLGGDLFHEN 62
Query: 66 KPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIH 125
KPSR+TLVKAIEILRRHCLND+PVQFQVVSDQ VNFQN FG VNYEDPHFNVGLPVFSIH
Sbjct: 63 KPSRTTLVKAIEILRRHCLNDKPVQFQVVSDQTVNFQNAFGQVNYEDPHFNVGLPVFSIH 122
Query: 126 GNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLG 185
GNHDDPAGVDNLSA+DILSACNLVNYFGKMVLGGSGVG+IT+YPIL++KGST VALYGLG
Sbjct: 123 GNHDDPAGVDNLSAIDILSACNLVNYFGKMVLGGSGVGQITLYPILMKKGSTTVALYGLG 182
Query: 186 NIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245
NIRDERLNRMFQTPHAVQWMRPE QE C VSDWFNILVLHQNRVK+NPKNAI+EHFLPRF
Sbjct: 183 NIRDERLNRMFQTPHAVQWMRPEVQEGCDVSDWFNILVLHQNRVKSNPKNAISEHFLPRF 242
Query: 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPT 305
LDF+VWGHEHECLIDPQEV GMGFH+TQPGSSVATSLI+GESKPKHVLLLEIK NQYRPT
Sbjct: 243 LDFIVWGHEHECLIDPQEVSGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPT 302
Query: 306 KIPLTSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELKLPL 365
KIPLTSVRPFEYTEI+LKDE+DIDP+DQNSILEHLDKVVRNLIE++SKK VNRSE+KLPL
Sbjct: 303 KIPLTSVRPFEYTEIVLKDESDIDPNDQNSILEHLDKVVRNLIEKASKKAVNRSEIKLPL 362
Query: 366 VRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAEAKIDDFERLRPEELN 425
VRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSK+SKK ++EA IDD ERLRPEELN
Sbjct: 363 VRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASKKGRSEANIDDSERLRPEELN 422
Query: 426 QQNIEALVAENNLKMEIIPVNDLDVALHNFVNKDDRLAFYSCVQYNLQETRHKIAKDSDT 485
QQNIEALVAE+NLKMEI+PVNDLDVALHNFVNKDD+LAFYSCVQYNLQETR K+AKDSD
Sbjct: 423 QQNIEALVAESNLKMEILPVNDLDVALHNFVNKDDKLAFYSCVQYNLQETRGKLAKDSDA 482
Query: 486 AKFEEEDIILKVGESLEERLKERSNHSKDAPQSTSNAASFEDIRSKTAAGVGTAISFSDD 545
KFEE+D+ILKVGE LEERLK+RS + Q S + E++ +K ++G+ A SFSDD
Sbjct: 483 KKFEEDDLILKVGECLEERLKDRSTRPTGSSQFLSTGLTSENL-TKGSSGIANA-SFSDD 540
Query: 546 EDTTQISDTKSATRGRKWSSAASRSSRGALESDKSKTSTRGRGRG--RGRGRGRGANNLK 603
EDTTQ+S TRGR+ SS A+ +TRGR + RGRGRG+ ++ +K
Sbjct: 541 EDTTQMSGLAPPTRGRRGSSTAN--------------TTRGRAKAPTRGRGRGKASSAMK 586
Query: 604 QTTLDASLGFRQSQR 618
QTTLD+SLGFRQSQR
Sbjct: 587 QTTLDSSLGFRQSQR 601
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Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9W6K1|MRE11_XENLA Double-strand break repair protein MRE11 OS=Xenopus laevis GN=mre11 PE=2 SV=1 | Back alignment and function description |
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| >sp|P49959|MRE11_HUMAN Double-strand break repair protein MRE11A OS=Homo sapiens GN=MRE11A PE=1 SV=3 | Back alignment and function description |
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| >sp|Q60HE6|MRE11_MACFA Double-strand break repair protein MRE11A OS=Macaca fascicularis GN=MRE11A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9JIM0|MRE11_RAT Double-strand break repair protein MRE11A OS=Rattus norvegicus GN=Mre11a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q61216|MRE11_MOUSE Double-strand break repair protein MRE11A OS=Mus musculus GN=Mre11a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9IAM7|MRE11_CHICK Double-strand break repair protein MRE11 OS=Gallus gallus GN=MRE11 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9UVN9|MRE11_COPC7 Double-strand break repair protein MRE11 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=MRE11 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9C291|MRE11_NEUCR Double-strand break repair protein mus-23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mus-23 PE=3 SV=3 | Back alignment and function description |
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| >sp|Q09683|RAD32_SCHPO DNA repair protein rad32 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad32 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 627 | ||||||
| 255569587 | 765 | meiotic recombination repair protein, pu | 0.984 | 0.806 | 0.850 | 0.0 | |
| 224122898 | 772 | predicted protein [Populus trichocarpa] | 0.971 | 0.788 | 0.846 | 0.0 | |
| 225461311 | 731 | PREDICTED: double-strand break repair pr | 0.980 | 0.841 | 0.837 | 0.0 | |
| 15239601 | 720 | double-strand break repair protein MRE11 | 0.952 | 0.829 | 0.811 | 0.0 | |
| 297792875 | 733 | hypothetical protein ARALYDRAFT_495511 [ | 0.947 | 0.810 | 0.795 | 0.0 | |
| 449476948 | 739 | PREDICTED: double-strand break repair pr | 0.966 | 0.820 | 0.775 | 0.0 | |
| 356542248 | 714 | PREDICTED: double-strand break repair pr | 0.948 | 0.833 | 0.781 | 0.0 | |
| 449458267 | 747 | PREDICTED: LOW QUALITY PROTEIN: double-s | 0.966 | 0.811 | 0.781 | 0.0 | |
| 357452429 | 747 | Meiotic recombination [Medicago truncatu | 0.948 | 0.796 | 0.807 | 0.0 | |
| 242074486 | 704 | hypothetical protein SORBIDRAFT_06g02996 | 0.964 | 0.859 | 0.723 | 0.0 |
| >gi|255569587|ref|XP_002525759.1| meiotic recombination repair protein, putative [Ricinus communis] gi|223534909|gb|EEF36595.1| meiotic recombination repair protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1078 bits (2788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/622 (85%), Positives = 577/622 (92%), Gaps = 5/622 (0%)
Query: 1 MGQQPREDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGD 60
MG EDI+N +RILVATDCHLGYMEKDE+RRHDSF+AFEEICSIAEQK+VDF+LLGGD
Sbjct: 1 MGDLSSEDISNMLRILVATDCHLGYMEKDEVRRHDSFQAFEEICSIAEQKQVDFLLLGGD 60
Query: 61 LFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLP 120
LFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQ VNF N+FGHVNYEDPHFNVGLP
Sbjct: 61 LFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQTVNFANRFGHVNYEDPHFNVGLP 120
Query: 121 VFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVA 180
VFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKM L GSGVG+IT+YPIL+RKGSTAVA
Sbjct: 121 VFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMALEGSGVGQITLYPILVRKGSTAVA 180
Query: 181 LYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEH 240
LYGLGNIRDERLNRMFQTPHAVQWMRPE+QE C++SDWFNILVLHQNRVKTNPKNAINEH
Sbjct: 181 LYGLGNIRDERLNRMFQTPHAVQWMRPESQEGCELSDWFNILVLHQNRVKTNPKNAINEH 240
Query: 241 FLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKEN 300
FLPRF+DF+VWGHEHECLIDPQEVPGMGFH+TQPGSSVATSLI+GESKPKHVLLLEIK N
Sbjct: 241 FLPRFMDFIVWGHEHECLIDPQEVPGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGN 300
Query: 301 QYRPTKIPLTSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSE 360
QYRPTKIPLTSVRPFEY E++LKDE DIDP+DQ+SILEHLDKVV NLIE+S+KK V+RSE
Sbjct: 301 QYRPTKIPLTSVRPFEYAEVVLKDENDIDPNDQSSILEHLDKVVNNLIEKSNKKAVSRSE 360
Query: 361 LKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAEAKIDDFERLR 420
LKLPLVR+KVDYSGFMTINPQRFGQKYVGKVANPQDILIFSK+S+K + +AKIDD ERLR
Sbjct: 361 LKLPLVRVKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASRKGQGQAKIDDSERLR 420
Query: 421 PEELNQQNIEALVAENNLKMEIIPVNDLDVALHNFVNKDDRLAFYSCVQYNLQETRHKIA 480
PEELNQQNIEALVAE+NLKMEI+PVNDLDVALHNFVNKDD++AFYSCVQYNLQETR+KIA
Sbjct: 421 PEELNQQNIEALVAESNLKMEILPVNDLDVALHNFVNKDDKMAFYSCVQYNLQETRNKIA 480
Query: 481 KDSDTAKFEEEDIILKVGESLEERLKERSNHSKDAPQSTSNAASFEDIRSKTAAGVGTAI 540
KDSDT KFE+EDIILKVGE LEER+KERS HSKDAPQ +S+A S ED RS AGVG+A+
Sbjct: 481 KDSDTIKFEKEDIILKVGECLEERVKERSMHSKDAPQISSSAHSIEDFRSIGTAGVGSAV 540
Query: 541 SFSDDEDTTQISDTKSATRGRKWSSAASRSSR-GALESDKSKTST----RGRGRGRGRGR 595
SFSDDEDTTQ+S +K+++R +K S SR S A E+DK KTST RGRGRGRGRGR
Sbjct: 541 SFSDDEDTTQLSGSKASSRNQKGSRLVSRPSYDDASEADKGKTSTRGRGRGRGRGRGRGR 600
Query: 596 GRGANNLKQTTLDASLGFRQSQ 617
GRG+NNLKQTTLD SLGFRQSQ
Sbjct: 601 GRGSNNLKQTTLDVSLGFRQSQ 622
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122898|ref|XP_002330391.1| predicted protein [Populus trichocarpa] gi|222871776|gb|EEF08907.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225461311|ref|XP_002281726.1| PREDICTED: double-strand break repair protein MRE11 [Vitis vinifera] gi|302143084|emb|CBI20379.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|15239601|ref|NP_200237.1| double-strand break repair protein MRE11 [Arabidopsis thaliana] gi|17380154|sp|Q9XGM2.1|MRE11_ARATH RecName: Full=Double-strand break repair protein MRE11 gi|5524769|emb|CAB50793.1| Mre11 protein [Arabidopsis thaliana] gi|9759499|dbj|BAB10749.1| DNA repair and meiosis protein Mre11 [Arabidopsis thaliana] gi|332009093|gb|AED96476.1| double-strand break repair protein MRE11 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297792875|ref|XP_002864322.1| hypothetical protein ARALYDRAFT_495511 [Arabidopsis lyrata subsp. lyrata] gi|297310157|gb|EFH40581.1| hypothetical protein ARALYDRAFT_495511 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449476948|ref|XP_004154884.1| PREDICTED: double-strand break repair protein MRE11-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356542248|ref|XP_003539581.1| PREDICTED: double-strand break repair protein MRE11-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449458267|ref|XP_004146869.1| PREDICTED: LOW QUALITY PROTEIN: double-strand break repair protein MRE11-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357452429|ref|XP_003596491.1| Meiotic recombination [Medicago truncatula] gi|355485539|gb|AES66742.1| Meiotic recombination [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|242074486|ref|XP_002447179.1| hypothetical protein SORBIDRAFT_06g029960 [Sorghum bicolor] gi|241938362|gb|EES11507.1| hypothetical protein SORBIDRAFT_06g029960 [Sorghum bicolor] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 627 | ||||||
| TAIR|locus:2162615 | 720 | MRE11 "MEIOTIC RECOMBINATION 1 | 0.955 | 0.831 | 0.789 | 9.9e-261 | |
| DICTYBASE|DDB_G0293546 | 689 | mre11 "DNA repair exonuclease" | 0.755 | 0.687 | 0.489 | 6.5e-122 | |
| UNIPROTKB|F1STJ9 | 714 | MRE11A "Uncharacterized protei | 0.858 | 0.753 | 0.426 | 4.4e-107 | |
| UNIPROTKB|E2RTK8 | 708 | MRE11A "Uncharacterized protei | 0.864 | 0.765 | 0.403 | 7.2e-107 | |
| UNIPROTKB|E1BIN9 | 708 | MRE11A "Uncharacterized protei | 0.862 | 0.764 | 0.406 | 2.5e-106 | |
| UNIPROTKB|F1PUK4 | 708 | MRE11A "Uncharacterized protei | 0.864 | 0.765 | 0.403 | 3.1e-106 | |
| ZFIN|ZDB-GENE-040426-2638 | 619 | mre11a "meiotic recombination | 0.856 | 0.867 | 0.410 | 1.4e-105 | |
| UNIPROTKB|B3KTC7 | 711 | MRE11A "Double-strand break re | 0.859 | 0.758 | 0.408 | 2.2e-105 | |
| UNIPROTKB|F8W7U8 | 707 | MRE11A "Double-strand break re | 0.859 | 0.762 | 0.408 | 2.2e-105 | |
| UNIPROTKB|P49959 | 708 | MRE11A "Double-strand break re | 0.859 | 0.761 | 0.408 | 2.2e-105 |
| TAIR|locus:2162615 MRE11 "MEIOTIC RECOMBINATION 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2509 (888.3 bits), Expect = 9.9e-261, P = 9.9e-261
Identities = 484/613 (78%), Positives = 532/613 (86%)
Query: 6 REDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65
RED ++T+R+LVATDCHLGYMEKDEIRRHDSF+AFEEICSIAE+K+VDF+LLGGDLFHEN
Sbjct: 3 REDFSDTLRVLVATDCHLGYMEKDEIRRHDSFKAFEEICSIAEEKQVDFLLLGGDLFHEN 62
Query: 66 KPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIH 125
KPSR+TLVKAIEILRRHCLND+PVQFQVVSDQ VNFQN FG VNYEDPHFNVGLPVFSIH
Sbjct: 63 KPSRTTLVKAIEILRRHCLNDKPVQFQVVSDQTVNFQNAFGQVNYEDPHFNVGLPVFSIH 122
Query: 126 GNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLG 185
GNHDDPAGVDNLSA+DILSACNLVNYFGKMVLGGSGVG+IT+YPIL++KGST VALYGLG
Sbjct: 123 GNHDDPAGVDNLSAIDILSACNLVNYFGKMVLGGSGVGQITLYPILMKKGSTTVALYGLG 182
Query: 186 NIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245
NIRDERLNRMFQTPHAVQWMRPE QE C VSDWFNILVLHQNRVK+NPKNAI+EHFLPRF
Sbjct: 183 NIRDERLNRMFQTPHAVQWMRPEVQEGCDVSDWFNILVLHQNRVKSNPKNAISEHFLPRF 242
Query: 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPT 305
LDF+VWGHEHECLIDPQEV GMGFH+TQPGSSVATSLI+GESKPKHVLLLEIK NQYRPT
Sbjct: 243 LDFIVWGHEHECLIDPQEVSGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPT 302
Query: 306 KIPLTSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELKLPL 365
KIPLTSVRPFEYTEI+LKDE+DIDP+DQNSILEHLDKVVRNLIE++SKK VNRSE+KLPL
Sbjct: 303 KIPLTSVRPFEYTEIVLKDESDIDPNDQNSILEHLDKVVRNLIEKASKKAVNRSEIKLPL 362
Query: 366 VRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFXXXXXXXXAEAKIDDFERLRPEELN 425
VRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIF +EA IDD ERLRPEELN
Sbjct: 363 VRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASKKGRSEANIDDSERLRPEELN 422
Query: 426 QQNIEALVAENNLKMEIIPVNDLDVALHNFVNKDDRLAFYSCVQYNLQETRHKIAKDSDT 485
QQNIEALVAE+NLKMEI+PVNDLDVALHNFVNKDD+LAFYSCVQYNLQETR K+AKDSD
Sbjct: 423 QQNIEALVAESNLKMEILPVNDLDVALHNFVNKDDKLAFYSCVQYNLQETRGKLAKDSDA 482
Query: 486 AKFEEEDIILKVGESLEERLKERSNHSKDAPQSTSNAASFEDIRSKTAAGVGTAISFSDD 545
KFEE+D+ILKVGE LEERLK+RS + Q S + E++ +K ++G+ A SFSDD
Sbjct: 483 KKFEEDDLILKVGECLEERLKDRSTRPTGSSQFLSTGLTSENL-TKGSSGIANA-SFSDD 540
Query: 546 EDTTQISDTKSATRGRKWXXXXXXXXXGALESDKSKTSTXXXXXXXXXXXXXXANNLKQT 605
EDTTQ+S TRGR+ G ++K T +KQT
Sbjct: 541 EDTTQMSGLAPPTRGRR-GSSTANTTRG-----RAKAPTRGRGRGKASSA------MKQT 588
Query: 606 TLDASLGFRQSQR 618
TLD+SLGFRQSQR
Sbjct: 589 TLDSSLGFRQSQR 601
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| DICTYBASE|DDB_G0293546 mre11 "DNA repair exonuclease" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1STJ9 MRE11A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RTK8 MRE11A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BIN9 MRE11A "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PUK4 MRE11A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040426-2638 mre11a "meiotic recombination 11 homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B3KTC7 MRE11A "Double-strand break repair protein MRE11A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F8W7U8 MRE11A "Double-strand break repair protein MRE11A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P49959 MRE11A "Double-strand break repair protein MRE11A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9JIM0 | MRE11_RAT | No assigned EC number | 0.3855 | 0.9473 | 0.8413 | yes | no |
| Q9XGM2 | MRE11_ARATH | No assigned EC number | 0.8113 | 0.9521 | 0.8291 | yes | no |
| Q61216 | MRE11_MOUSE | No assigned EC number | 0.3867 | 0.9505 | 0.8441 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.01340066 | hypothetical protein (772 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | estExt_fgenesh4_pm.C_LG_I0970 | • | • | • | 0.933 | ||||||
 | gw1.V.2541.1 | • | • | • | 0.606 | ||||||
 | gw1.XIII.413.1 | • | • | • | 0.602 | ||||||
 | eugene3.00280090 | • | • | • | • | 0.581 | |||||
 | eugene3.00120511 | • | • | • | 0.557 | ||||||
 | gw1.XI.3477.1 | • | • | 0.549 | |||||||
 | gw1.III.2206.1 | • | 0.533 | ||||||||
 | eugene3.00660007 | • | • | • | 0.533 | ||||||
 | gw1.IX.5004.1 | • | • | • | 0.530 | ||||||
 | eugene3.00020503 | • | • | 0.519 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 627 | |||
| TIGR00583 | 402 | TIGR00583, mre11, DNA repair protein (mre11) | 1e-147 | |
| cd00840 | 223 | cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal m | 8e-58 | |
| pfam04152 | 166 | pfam04152, Mre11_DNA_bind, Mre11 DNA-binding presu | 2e-52 | |
| COG0420 | 390 | COG0420, SbcD, DNA repair exonuclease [DNA replica | 2e-31 | |
| pfam00149 | 185 | pfam00149, Metallophos, Calcineurin-like phosphoes | 1e-11 |
| >gnl|CDD|233033 TIGR00583, mre11, DNA repair protein (mre11) | Back alignment and domain information |
|---|
Score = 431 bits (1110), Expect = e-147
Identities = 186/409 (45%), Positives = 260/409 (63%), Gaps = 25/409 (6%)
Query: 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSR 69
+T+RIL++TD H+GY E D +R DS+ F EI IA++++VD +LLGGDLFHENKPSR
Sbjct: 1 EDTIRILISTDNHVGYGENDPVRGDDSWVTFNEILQIAKEQDVDMILLGGDLFHENKPSR 60
Query: 70 STLVKAIEILRRHCLNDRPVQFQVVSDQAVNF-QNKFGHVNYEDPHFNVGLPVFSIHGNH 128
+L + + LR +CL D+P + +++SD ++ F F +VNYEDP+ NV +PVFSIHGNH
Sbjct: 61 KSLYQVLRSLRLNCLGDKPCELELLSDASLVFGDTAFCNVNYEDPNINVAIPVFSIHGNH 120
Query: 129 DDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIR 188
DDP+G A+DIL A LVNYFG++ I V PIL++KG T +ALYG+ N+R
Sbjct: 121 DDPSGDGRYCALDILQATGLVNYFGRV----PENDNIVVSPILLQKGFTKLALYGISNVR 176
Query: 189 DERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDF 248
DERL R F+ + V+++RP + +WFN+L +HQN P + + E F+P F D
Sbjct: 177 DERLYRTFRD-NKVKFLRPNLYRD----EWFNLLTVHQNHSAHTPTSYLPESFIPDFYDL 231
Query: 249 VVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIP 308
V+WGHEHECLIDP P GF + QPGS+VATSL GE+ PKHV +L I ++ KIP
Sbjct: 232 VIWGHEHECLIDPVYNPTQGFTVLQPGSTVATSLSPGEAAPKHVFILNITGRKFHLEKIP 291
Query: 309 LTSVRPFEYTEIILKDEADIDP--DDQNSILEHLDKVVRNLIE---------RSSKKTVN 357
L +VRPF EIIL + I P +++ L++L V +I ++
Sbjct: 292 LRTVRPFVMKEIILSEVPSIRPMVENKKETLKYLISKVEEMITEANAEWKAKQADVPVDE 351
Query: 358 RSELKLPLVRIKVDYSG----FMTINPQRFGQKYVGKVANPQDILIFSK 402
E LPL+R++VDY+G + NPQRF ++VG+VAN D++ F K
Sbjct: 352 NEEPPLPLIRLRVDYTGPWLGYQVENPQRFSNRFVGRVANANDVVQFYK 400
|
All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria [DNA metabolism, DNA replication, recombination, and repair]. Length = 402 |
| >gnl|CDD|163616 cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >gnl|CDD|217930 pfam04152, Mre11_DNA_bind, Mre11 DNA-binding presumed domain | Back alignment and domain information |
|---|
| >gnl|CDD|223497 COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 627 | |||
| KOG2310 | 646 | consensus DNA repair exonuclease MRE11 [Replicatio | 100.0 | |
| TIGR00583 | 405 | mre11 DNA repair protein (mre11). All proteins in | 100.0 | |
| COG0420 | 390 | SbcD DNA repair exonuclease [DNA replication, reco | 100.0 | |
| PRK10966 | 407 | exonuclease subunit SbcD; Provisional | 100.0 | |
| PF04152 | 175 | Mre11_DNA_bind: Mre11 DNA-binding presumed domain | 100.0 | |
| PHA02546 | 340 | 47 endonuclease subunit; Provisional | 99.98 | |
| TIGR00619 | 253 | sbcd exonuclease SbcD. This family is based on the | 99.96 | |
| cd00840 | 223 | MPP_Mre11_N Mre11 nuclease, N-terminal metallophos | 99.94 | |
| cd07385 | 223 | MPP_YkuE_C Bacillus subtilis YkuE and related prot | 99.77 | |
| PRK11340 | 271 | phosphodiesterase YaeI; Provisional | 99.71 | |
| PRK11148 | 275 | cyclic 3',5'-adenosine monophosphate phosphodieste | 99.6 | |
| PF12850 | 156 | Metallophos_2: Calcineurin-like phosphoesterase su | 99.56 | |
| cd07402 | 240 | MPP_GpdQ Enterobacter aerogenes GpdQ and related p | 99.54 | |
| cd07400 | 144 | MPP_YydB Bacillus subtilis YydB and related protei | 99.54 | |
| cd07395 | 262 | MPP_CSTP1 Homo sapiens CSTP1 and related proteins, | 99.52 | |
| PRK09453 | 182 | phosphodiesterase; Provisional | 99.5 | |
| cd07388 | 224 | MPP_Tt1561 Thermus thermophilus Tt1561 and related | 99.47 | |
| TIGR00040 | 158 | yfcE phosphoesterase, MJ0936 family. Members of th | 99.46 | |
| cd00841 | 155 | MPP_YfcE Escherichia coli YfcE and related protein | 99.45 | |
| cd07394 | 178 | MPP_Vps29 Homo sapiens Vps29 and related proteins, | 99.44 | |
| PF00149 | 200 | Metallophos: Calcineurin-like phosphoesterase; Int | 99.41 | |
| cd07396 | 267 | MPP_Nbla03831 Homo sapiens Nbla03831 and related p | 99.4 | |
| cd07392 | 188 | MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel | 99.39 | |
| PRK05340 | 241 | UDP-2,3-diacylglucosamine hydrolase; Provisional | 99.38 | |
| cd07401 | 256 | MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal | 99.36 | |
| COG2129 | 226 | Predicted phosphoesterases, related to the Icc pro | 99.35 | |
| cd07393 | 232 | MPP_DR1119 Deinococcus radiodurans DR1119 and rela | 99.35 | |
| cd07383 | 199 | MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase | 99.35 | |
| TIGR03729 | 239 | acc_ester putative phosphoesterase. Members of thi | 99.27 | |
| cd07399 | 214 | MPP_YvnB Bacillus subtilis YvnB and related protei | 99.25 | |
| TIGR01854 | 231 | lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. | 99.23 | |
| COG0622 | 172 | Predicted phosphoesterase [General function predic | 99.22 | |
| COG1408 | 284 | Predicted phosphohydrolases [General function pred | 99.15 | |
| cd00845 | 252 | MPP_UshA_N_like Escherichia coli UshA-like family, | 99.12 | |
| cd00839 | 294 | MPP_PAPs purple acid phosphatases of the metalloph | 99.08 | |
| cd07397 | 238 | MPP_DevT Myxococcus xanthus DevT and related prote | 99.05 | |
| cd07378 | 277 | MPP_ACP5 Homo sapiens acid phosphatase 5 and relat | 99.04 | |
| COG1409 | 301 | Icc Predicted phosphohydrolases [General function | 99.02 | |
| cd07386 | 243 | MPP_DNA_pol_II_small_archeal_C archeal DNA polymer | 99.02 | |
| cd07391 | 172 | MPP_PF1019 Pyrococcus furiosus PF1019 and related | 99.02 | |
| PRK04036 | 504 | DNA polymerase II small subunit; Validated | 99.01 | |
| cd07404 | 166 | MPP_MS158 Microscilla MS158 and related proteins, | 99.0 | |
| cd07379 | 135 | MPP_239FB Homo sapiens 239FB and related proteins, | 99.0 | |
| PF14582 | 255 | Metallophos_3: Metallophosphoesterase, calcineurin | 98.98 | |
| cd07410 | 277 | MPP_CpdB_N Escherichia coli CpdB and related prote | 98.98 | |
| TIGR00024 | 225 | SbcD_rel_arch putative phosphoesterase, SbcD/Mre11 | 98.89 | |
| cd07398 | 217 | MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat | 98.88 | |
| cd07406 | 257 | MPP_CG11883_N Drosophila melanogaster CG11883 and | 98.88 | |
| cd07411 | 264 | MPP_SoxB_N Thermus thermophilus SoxB and related p | 98.82 | |
| cd07390 | 168 | MPP_AQ1575 Aquifex aeolicus AQ1575 and related pro | 98.8 | |
| cd07408 | 257 | MPP_SA0022_N Staphylococcus aureus SA0022 and rela | 98.79 | |
| cd07412 | 288 | MPP_YhcR_N Bacillus subtilis YhcR endonuclease and | 98.75 | |
| cd00838 | 131 | MPP_superfamily metallophosphatase superfamily, me | 98.7 | |
| cd08165 | 156 | MPP_MPPE1 human MPPE1 and related proteins, metall | 98.68 | |
| cd07409 | 281 | MPP_CD73_N CD73 ecto-5'-nucleotidase and related p | 98.64 | |
| cd07384 | 171 | MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and re | 98.56 | |
| KOG1432 | 379 | consensus Predicted DNA repair exonuclease SIA1 [G | 98.54 | |
| PLN02533 | 427 | probable purple acid phosphatase | 98.51 | |
| PTZ00422 | 394 | glideosome-associated protein 50; Provisional | 98.5 | |
| cd07403 | 129 | MPP_TTHA0053 Thermus thermophilus TTHA0053 and rel | 98.5 | |
| KOG2679 | 336 | consensus Purple (tartrate-resistant) acid phospha | 98.48 | |
| cd07405 | 285 | MPP_UshA_N Escherichia coli UshA and related prote | 98.44 | |
| cd08163 | 257 | MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related | 98.41 | |
| PRK09419 | 1163 | bifunctional 2',3'-cyclic nucleotide 2'-phosphodie | 98.36 | |
| cd08164 | 193 | MPP_Ted1 Saccharomyces cerevisiae Ted1 and related | 98.36 | |
| COG1407 | 235 | Predicted ICC-like phosphoesterases [General funct | 98.33 | |
| cd00842 | 296 | MPP_ASMase acid sphingomyelinase and related prote | 98.23 | |
| COG0737 | 517 | UshA 5'-nucleotidase/2',3'-cyclic phosphodiesteras | 98.17 | |
| PHA02239 | 235 | putative protein phosphatase | 98.12 | |
| COG2908 | 237 | Uncharacterized protein conserved in bacteria [Fun | 98.06 | |
| cd07407 | 282 | MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and | 98.03 | |
| COG1311 | 481 | HYS2 Archaeal DNA polymerase II, small subunit/DNA | 98.0 | |
| cd07387 | 257 | MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2 | 97.96 | |
| cd08166 | 195 | MPP_Cdc1_like_1 uncharacterized subgroup related t | 97.95 | |
| PRK09558 | 551 | ushA bifunctional UDP-sugar hydrolase/5'-nucleotid | 97.94 | |
| cd08162 | 313 | MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA | 97.93 | |
| TIGR01390 | 626 | CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphod | 97.92 | |
| PRK09419 | 1163 | bifunctional 2',3'-cyclic nucleotide 2'-phosphodie | 97.89 | |
| PRK09418 | 780 | bifunctional 2',3'-cyclic nucleotide 2'-phosphodie | 97.89 | |
| TIGR01530 | 550 | nadN NAD pyrophosphatase/5'-nucleotidase NadN. Thi | 97.88 | |
| PRK11907 | 814 | bifunctional 2',3'-cyclic nucleotide 2'-phosphodie | 97.87 | |
| PRK00166 | 275 | apaH diadenosine tetraphosphatase; Reviewed | 97.86 | |
| KOG3662 | 410 | consensus Cell division control protein/predicted | 97.86 | |
| cd07425 | 208 | MPP_Shelphs Shewanella-like phosphatases, metallop | 97.85 | |
| PRK09420 | 649 | cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosp | 97.84 | |
| cd00844 | 262 | MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-t | 97.81 | |
| COG4186 | 186 | Predicted phosphoesterase or phosphohydrolase [Gen | 97.71 | |
| cd07424 | 207 | MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase do | 97.66 | |
| cd07423 | 234 | MPP_PrpE Bacillus subtilis PrpE and related protei | 97.64 | |
| cd00144 | 225 | MPP_PPP_family phosphoprotein phosphatases of the | 97.47 | |
| cd07422 | 257 | MPP_ApaH Escherichia coli ApaH and related protein | 97.31 | |
| PRK11439 | 218 | pphA serine/threonine protein phosphatase 1; Provi | 97.3 | |
| PRK09968 | 218 | serine/threonine-specific protein phosphatase 2; P | 97.27 | |
| PRK13625 | 245 | bis(5'-nucleosyl)-tetraphosphatase PrpE; Provision | 97.24 | |
| TIGR03767 | 496 | P_acnes_RR metallophosphoesterase, PPA1498 family. | 97.11 | |
| COG1768 | 230 | Predicted phosphohydrolase [General function predi | 96.99 | |
| TIGR00668 | 279 | apaH bis(5'-nucleosyl)-tetraphosphatase (symmetric | 96.97 | |
| KOG1378 | 452 | consensus Purple acid phosphatase [Carbohydrate tr | 96.84 | |
| cd07382 | 255 | MPP_DR1281 Deinococcus radiodurans DR1281 and rela | 96.83 | |
| cd07413 | 222 | MPP_PA3087 Pseudomonas aeruginosa PA3087 and relat | 96.74 | |
| cd07421 | 304 | MPP_Rhilphs Rhilph phosphatases, metallophosphatas | 96.74 | |
| KOG3325 | 183 | consensus Membrane coat complex Retromer, subunit | 96.56 | |
| smart00156 | 271 | PP2Ac Protein phosphatase 2A homologues, catalytic | 96.29 | |
| PF09587 | 250 | PGA_cap: Bacterial capsule synthesis protein PGA_c | 96.25 | |
| KOG3770 | 577 | consensus Acid sphingomyelinase and PHM5 phosphate | 96.08 | |
| cd07381 | 239 | MPP_CapA CapA and related proteins, metallophospha | 95.97 | |
| PF04042 | 209 | DNA_pol_E_B: DNA polymerase alpha/epsilon subunit | 95.93 | |
| TIGR00282 | 266 | metallophosphoesterase, MG_246/BB_0505 family. A m | 95.89 | |
| cd07416 | 305 | MPP_PP2B PP2B, metallophosphatase domain. PP2B (ca | 95.74 | |
| smart00854 | 239 | PGA_cap Bacterial capsule synthesis protein PGA_ca | 95.55 | |
| cd07415 | 285 | MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein | 95.26 | |
| cd07414 | 293 | MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzyme | 95.05 | |
| PTZ00480 | 320 | serine/threonine-protein phosphatase; Provisional | 95.0 | |
| PTZ00239 | 303 | serine/threonine protein phosphatase 2A; Provision | 94.21 | |
| PTZ00244 | 294 | serine/threonine-protein phosphatase PP1; Provisio | 94.19 | |
| cd07380 | 150 | MPP_CWF19_N Schizosaccharomyces pombe CWF19 and re | 93.99 | |
| cd07418 | 377 | MPP_PP7 PP7, metallophosphatase domain. PP7 is a p | 93.9 | |
| cd07417 | 316 | MPP_PP5_C PP5, C-terminal metallophosphatase domai | 93.55 | |
| cd07420 | 321 | MPP_RdgC Drosophila melanogaster RdgC and related | 93.47 | |
| cd07419 | 311 | MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase a | 93.09 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 92.63 | |
| KOG2863 | 456 | consensus RNA lariat debranching enzyme [RNA proce | 92.37 | |
| KOG3428 | 109 | consensus Small nuclear ribonucleoprotein SMD1 and | 90.42 | |
| TIGR03768 | 492 | RPA4764 metallophosphoesterase, RPA4764 family. Th | 90.0 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 87.66 | |
| KOG4419 | 602 | consensus 5' nucleotidase [Nucleotide transport an | 82.33 |
| >KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-136 Score=1093.47 Aligned_cols=573 Identities=51% Similarity=0.855 Sum_probs=505.3
Q ss_pred CCCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q 006878 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLND 86 (627)
Q Consensus 7 ~~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~ 86 (627)
++-+++||||++||+||||.++|++|++|+|.||+||+.+|++++|||||++|||||+|+||++++++|+++||+||+||
T Consensus 8 ~D~entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgd 87 (646)
T KOG2310|consen 8 DDFENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGD 87 (646)
T ss_pred cccccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCC
Confidence 34489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccceeeechhhhhccc-ccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccce
Q 006878 87 RPVQFQVVSDQAVNFQN-KFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEI 165 (627)
Q Consensus 87 ~p~~~~~lsd~~~~f~~-~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i 165 (627)
+||+||+||||++||.+ .|.+|||+|||+|++||||.||||||+|+|.+.+||+|+|+.+|||||||++ +++++|
T Consensus 88 kP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~----~~id~I 163 (646)
T KOG2310|consen 88 KPVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKV----SEIDKI 163 (646)
T ss_pred CceeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhccc----cCcceE
Confidence 99999999999999986 5999999999999999999999999999999999999999999999999996 367999
Q ss_pred eEEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcC
Q 006878 166 TVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245 (627)
Q Consensus 166 ~~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~ 245 (627)
.++||+++||.|++||||||+++|+||.++|.+ ++|.|++|+.. .++|||+|++|||+..|++++++||+++|+|
T Consensus 164 ~vsPiLlqKG~tklALYGLg~irDeRL~R~Fk~-~~V~f~rPe~~----e~dWFNllvlHQNr~~h~~tn~lpE~flp~F 238 (646)
T KOG2310|consen 164 DVSPILLQKGSTKLALYGLGSIRDERLYRMFKN-GKVTFLRPEEY----EDDWFNLLVLHQNRSKHRPTNFLPEQFLPDF 238 (646)
T ss_pred EEEeeeeccCceeEEEeeccccchHHHHHHHHh-CceEEecCccc----cccceeeEEEeecccCCCCcccCcHhHhhhh
Confidence 999999999999999999999999999999998 78999999864 3799999999999999999999999999999
Q ss_pred CCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEEEECCCCCcEEEEEEEeccC
Q 006878 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDE 325 (627)
Q Consensus 246 ~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~tvRpf~~~~i~L~~~ 325 (627)
+|+|+|||+|+|.|.|++++.++|+|+||||+|+||+++||+.+|+|+||+|.|++++.++|||.|||||++.+|.|.+.
T Consensus 239 ~DlviWGHEHEC~i~p~~n~~~~F~i~QPGSsVaTSL~~gEa~~Khv~lL~Ikg~~~~l~~IpL~TVRpf~~~~ivL~d~ 318 (646)
T KOG2310|consen 239 LDLVIWGHEHECKIDPQYNAIQGFYILQPGSSVATSLSPGEAKPKHVGLLRIKGRKFKLEKIPLRTVRPFVMDDIVLADH 318 (646)
T ss_pred hhheeeccccccccCcccccccceeeecCCCccccccCcccccCceEEEEEecCCcccccccccceecceeeeeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC----CCCCCHhHHHHHHHHHHHHHHHHhhhccccc-ccCCCCeEEEEEeecc-ccccChhhhhhhhhhcccCccceEE
Q 006878 326 AD----IDPDDQNSILEHLDKVVRNLIERSSKKTVNR-SELKLPLVRIKVDYSG-FMTINPQRFGQKYVGKVANPQDILI 399 (627)
Q Consensus 326 ~~----~~~~~~~~i~~~l~~~v~~~i~~a~~~~~~~-~~~~~PLiRLrV~~sg-~~~~n~~rfg~~f~~~vaNp~dil~ 399 (627)
.+ +.|.....+.+++.++|++||+.|.+++..+ .++++|||||||+|+| |+++||+|||++|+|+||||+|||+
T Consensus 319 ~~~~~~i~p~~~~~i~~~~~e~veemI~~A~~q~~~~~~~p~lPLIRLrVdYsg~~~~~n~~RFs~rfvgrVAN~~Dvv~ 398 (646)
T KOG2310|consen 319 PDILNPIRPKVTDGILSFLIEKVEEMIETAEAQRLGRSGQPELPLIRLRVDYSGDFEPFNPQRFSQRFVGRVANPQDVVQ 398 (646)
T ss_pred CccccCCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEecCCccccCHHHHhHhhhhcccChhheEE
Confidence 87 7788888899999999999999998876544 4699999999999999 8999999999999999999999999
Q ss_pred EEecccccccccccccccccCcccchhhhHHHHHHhh----cccccccCCCcHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 006878 400 FSKSSKKSKAEAKIDDFERLRPEELNQQNIEALVAEN----NLKMEIIPVNDLDVALHNFVNKDDRLAFYSCVQYNLQET 475 (627)
Q Consensus 400 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~l~~l~~~~l~~a~~~fv~k~d~~a~~~~v~~~~~~~ 475 (627)
|+|++|+.+++...++.+.++++++++.+++.||.++ +.+|++|++.+|++||++||+|||++||++||+++|+++
T Consensus 399 f~k~~kk~rte~~~~~t~~~~~~e~~~~~ve~Lvn~y~~~~n~ql~lL~~~gl~eal~~fv~kdek~A~~~~V~~~iek~ 478 (646)
T KOG2310|consen 399 FSKKRKKTRTEEVNNGTEALRPEEGNQLRVETLVNQYTAESNVQLSLLPERGLGEALQEFVDKDEKDAFEECVKYQIEKV 478 (646)
T ss_pred EeecccccccccccccchhccccccchhhHHHHHhhhhhccccceeeeccccHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 9998887777666677788889999999999999554 789999999999999999999999999999999999988
Q ss_pred HHHHhhcCCccccchhhHHHHHHHHHHHHHhh--hcCCCCCCCCCCcccccccccccccccCcccceeccCCcccccccC
Q 006878 476 RHKIAKDSDTAKFEEEDIILKVGESLEERLKE--RSNHSKDAPQSTSNAASFEDIRSKTAAGVGTAISFSDDEDTTQISD 553 (627)
Q Consensus 476 ~~~~~~~~~~~~~~~~d~i~~~~~~~~er~~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~e~~~~~~~ 553 (627)
++ +.+++.+.++.+++.|.|+. +.++...+++ -.+++..+.++..+. ..+|++|.....|+
T Consensus 479 ~~----------~~~~~~~~~~~E~i~~~lk~~~r~~~~~~t~~-~e~~e~~e~~~~~~~------~~~s~~e~~~~~s~ 541 (646)
T KOG2310|consen 479 QR----------FNEEDHIDKVEENIDEELKRFKRATRKRGTNP-KEDDETREALTEGSA------LRSSNEESASGFSS 541 (646)
T ss_pred cc----------cchhhhcchHHHHHHHHHHHHHhhhccCCCCc-Cchhhhhhhhccccc------ccccccccccccCc
Confidence 43 45678889999999999888 6666665555 333455555444432 46777777777776
Q ss_pred ccccccCCcccccccccccCcccccCcccCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 006878 554 TKSATRGRKWSSAASRSSRGALESDKSKTSTRGRGRGRGRGRGRGANNLKQTTLDASLGFRQSQR 618 (627)
Q Consensus 554 ~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rgr~~~~~~~~~~~~~~~~~~~~~~~ 618 (627)
.-.-..++-.|+++..| +.....++|||||||++..+..+++-|+||+.++.
T Consensus 542 ~~~~s~~~~~S~~~~~~-------------~~s~~pt~~rgr~r~~~~~r~~~~~ss~g~s~~~~ 593 (646)
T KOG2310|consen 542 DLLMSHEELGSSIANDS-------------SVSAAPTKGRGRGRGRRGKRGQNSDSSLGFSRTRA 593 (646)
T ss_pred ccccccchhhhhhcccc-------------chhcCCCcccccccccccccCCccccccchhhhcc
Confidence 66666555555543222 22223344444444444444566667777777655
|
|
| >TIGR00583 mre11 DNA repair protein (mre11) | Back alignment and domain information |
|---|
| >COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK10966 exonuclease subunit SbcD; Provisional | Back alignment and domain information |
|---|
| >PF04152 Mre11_DNA_bind: Mre11 DNA-binding presumed domain ; InterPro: IPR007281 The Mre11 complex is a multi-subunit nuclease that is composed of Mre11, Rad50 and Nbs1/Xrs2, and is involved in checkpoint signalling and DNA replication [] | Back alignment and domain information |
|---|
| >PHA02546 47 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR00619 sbcd exonuclease SbcD | Back alignment and domain information |
|---|
| >cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >PRK11340 phosphodiesterase YaeI; Provisional | Back alignment and domain information |
|---|
| >PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [] | Back alignment and domain information |
|---|
| >cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >PRK09453 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >TIGR00040 yfcE phosphoesterase, MJ0936 family | Back alignment and domain information |
|---|
| >cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11 | Back alignment and domain information |
|---|
| >cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional | Back alignment and domain information |
|---|
| >cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >TIGR03729 acc_ester putative phosphoesterase | Back alignment and domain information |
|---|
| >cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase | Back alignment and domain information |
|---|
| >COG0622 Predicted phosphoesterase [General function prediction only] | Back alignment and domain information |
|---|
| >COG1408 Predicted phosphohydrolases [General function prediction only] | Back alignment and domain information |
|---|
| >cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >COG1409 Icc Predicted phosphohydrolases [General function prediction only] | Back alignment and domain information |
|---|
| >cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >PRK04036 DNA polymerase II small subunit; Validated | Back alignment and domain information |
|---|
| >cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A | Back alignment and domain information |
|---|
| >cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related | Back alignment and domain information |
|---|
| >cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02533 probable purple acid phosphatase | Back alignment and domain information |
|---|
| >PTZ00422 glideosome-associated protein 50; Provisional | Back alignment and domain information |
|---|
| >cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
| >cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >COG1407 Predicted ICC-like phosphoesterases [General function prediction only] | Back alignment and domain information |
|---|
| >cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >PHA02239 putative protein phosphatase | Back alignment and domain information |
|---|
| >COG2908 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain | Back alignment and domain information |
|---|
| >cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain | Back alignment and domain information |
|---|
| >PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed | Back alignment and domain information |
|---|
| >cd08162 MPP_PhoA_N Synechococcus sp | Back alignment and domain information |
|---|
| >TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase | Back alignment and domain information |
|---|
| >PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
| >PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN | Back alignment and domain information |
|---|
| >PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed | Back alignment and domain information |
|---|
| >PRK00166 apaH diadenosine tetraphosphatase; Reviewed | Back alignment and domain information |
|---|
| >KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain | Back alignment and domain information |
|---|
| >PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed | Back alignment and domain information |
|---|
| >cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only] | Back alignment and domain information |
|---|
| >cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >PRK11439 pphA serine/threonine protein phosphatase 1; Provisional | Back alignment and domain information |
|---|
| >PRK09968 serine/threonine-specific protein phosphatase 2; Provisional | Back alignment and domain information |
|---|
| >PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional | Back alignment and domain information |
|---|
| >TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family | Back alignment and domain information |
|---|
| >COG1768 Predicted phosphohydrolase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical) | Back alignment and domain information |
|---|
| >KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain | Back alignment and domain information |
|---|
| >KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain | Back alignment and domain information |
|---|
| >PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria | Back alignment and domain information |
|---|
| >KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast | Back alignment and domain information |
|---|
| >TIGR00282 metallophosphoesterase, MG_246/BB_0505 family | Back alignment and domain information |
|---|
| >cd07416 MPP_PP2B PP2B, metallophosphatase domain | Back alignment and domain information |
|---|
| >smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap | Back alignment and domain information |
|---|
| >cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >PTZ00480 serine/threonine-protein phosphatase; Provisional | Back alignment and domain information |
|---|
| >PTZ00239 serine/threonine protein phosphatase 2A; Provisional | Back alignment and domain information |
|---|
| >PTZ00244 serine/threonine-protein phosphatase PP1; Provisional | Back alignment and domain information |
|---|
| >cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07418 MPP_PP7 PP7, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain | Back alignment and domain information |
|---|
| >cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain | Back alignment and domain information |
|---|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
| >KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family | Back alignment and domain information |
|---|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
| >KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 627 | ||||
| 3t1i_A | 431 | Crystal Structure Of Human Mre11: Understanding Tum | 1e-102 | ||
| 4fbk_A | 472 | Crystal Structure Of A Covalently Fused Nbs1-Mre11 | 1e-94 | ||
| 4fcx_B | 404 | S.Pombe Mre11 Apoenzym Length = 404 | 8e-94 | ||
| 4fbw_A | 417 | Crystal Structure Of An Unfused Mre11-Nbs1 Complex | 9e-94 | ||
| 3dsc_A | 349 | Crystal Structure Of P. Furiosus Mre11 Dna Synaptic | 8e-10 | ||
| 4hd0_A | 339 | Mre11 Atld1718 MUTATION RETAINS TEL1ATM ACTIVITY BU | 9e-10 | ||
| 1ii7_A | 333 | Crystal Structure Of P. Furiosus Mre11 With Mangane | 9e-10 | ||
| 1s8e_A | 333 | Crystal Structure Of Mre11-3 Length = 333 | 4e-09 | ||
| 3dsd_A | 349 | Crystal Structure Of P. Furiosus Mre11-H85s Bound T | 5e-09 |
| >pdb|3T1I|A Chain A, Crystal Structure Of Human Mre11: Understanding Tumorigenic Mutations Length = 431 | Back alignment and structure |
|
| >pdb|4FBK|A Chain A, Crystal Structure Of A Covalently Fused Nbs1-Mre11 Complex With One Manganese Ion Per Active Site Length = 472 | Back alignment and structure |
| >pdb|4FCX|B Chain B, S.Pombe Mre11 Apoenzym Length = 404 | Back alignment and structure |
| >pdb|4FBW|A Chain A, Crystal Structure Of An Unfused Mre11-Nbs1 Complex With Two Manganese Ions Per Active Site Length = 417 | Back alignment and structure |
| >pdb|3DSC|A Chain A, Crystal Structure Of P. Furiosus Mre11 Dna Synaptic Complex Length = 349 | Back alignment and structure |
| >pdb|4HD0|A Chain A, Mre11 Atld1718 MUTATION RETAINS TEL1ATM ACTIVITY BUT BLOCKS DNA Double-Strand Break Repair Length = 339 | Back alignment and structure |
| >pdb|1II7|A Chain A, Crystal Structure Of P. Furiosus Mre11 With Manganese And Damp Length = 333 | Back alignment and structure |
| >pdb|1S8E|A Chain A, Crystal Structure Of Mre11-3 Length = 333 | Back alignment and structure |
| >pdb|3DSD|A Chain A, Crystal Structure Of P. Furiosus Mre11-H85s Bound To A Branched Dna And Manganese Length = 349 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens} Length = 431 | Back alignment and structure |
|---|
Score = 400 bits (1029), Expect = e-135
Identities = 198/419 (47%), Positives = 267/419 (63%), Gaps = 16/419 (3%)
Query: 1 MGQQPREDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGD 60
M D NT +ILVATD HLG+MEKD +R +D+F +EI +A++ EVDF+LLGGD
Sbjct: 21 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD 80
Query: 61 LFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGL 119
LFHENKPSR TL +E+LR++C+ DRPVQF+++SDQ+VNF +KF VNY+D + N+ +
Sbjct: 81 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI 140
Query: 120 PVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAV 179
PVFSIHGNHDDP G D L A+DILS VN+FG+ V +I + P+L++KGST +
Sbjct: 141 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRS----MSVEKIDISPVLLQKGSTKI 196
Query: 180 ALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINE 239
ALYGLG+I DERL RMF V +RP+ E WFN+ V+HQNR K N I E
Sbjct: 197 ALYGLGSIPDERLYRMFV-NKKVTMLRPKEDEN----SWFNLFVIHQNRSKHGSTNFIPE 251
Query: 240 HFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKE 299
FL F+D V+WGHEHEC I P + F+++QPGSSV TSL GE+ KHV LL IK
Sbjct: 252 QFLDDFIDLVIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKG 311
Query: 300 NQYRPTKIPLTSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIER-----SSKK 354
+ KIPL +VR F +I+L + DI D + + + IE ++
Sbjct: 312 RKMNMHKIPLHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERER 371
Query: 355 TVNRSELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAEAK 412
N + + PLVR++VDYS GF + RF QK+V +VANP+DI+ F + ++ + +
Sbjct: 372 LGNSHQPEKPLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGE 430
|
| >4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B* Length = 417 | Back alignment and structure |
|---|
| >4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A* Length = 472 | Back alignment and structure |
|---|
| >3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A* Length = 386 | Back alignment and structure |
|---|
| >1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A Length = 333 | Back alignment and structure |
|---|
| >2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A Length = 336 | Back alignment and structure |
|---|
| >3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C Length = 379 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6 Length = 260 | Back alignment and structure |
|---|
| >1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Length = 228 | Back alignment and structure |
|---|
| >3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A Length = 330 | Back alignment and structure |
|---|
| >1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A* Length = 313 | Back alignment and structure |
|---|
| >2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes} Length = 443 | Back alignment and structure |
|---|
| >3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A Length = 274 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 627 | |||
| 4fbw_A | 417 | DNA repair protein RAD32; DNA double-strand break | 100.0 | |
| 4fbk_A | 472 | DNA repair and telomere maintenance protein NBS1, | 100.0 | |
| 3t1i_A | 431 | Double-strand break repair protein MRE11A; DNA rep | 100.0 | |
| 1ii7_A | 333 | MRE11 nuclease; RAD50, DNA double-strand break rep | 100.0 | |
| 3av0_A | 386 | DNA double-strand break repair protein MRE11; DNA | 100.0 | |
| 3tho_B | 379 | Exonuclease, putative; adenosine triphosphate, bac | 99.97 | |
| 2q8u_A | 336 | Exonuclease, putative; structural genomics, joint | 99.97 | |
| 3d03_A | 274 | Phosphohydrolase; glycerophosphodiesterase, metall | 99.79 | |
| 3ib7_A | 330 | ICC protein; metallophosphoesterase, alpha-beta fo | 99.79 | |
| 1uf3_A | 228 | Hypothetical protein TT1561; metallo-dependent pho | 99.75 | |
| 2yvt_A | 260 | Hypothetical protein AQ_1956; structural genomics, | 99.72 | |
| 1z2w_A | 192 | Vacuolar protein sorting 29; VPS29, retromer, phos | 99.66 | |
| 2a22_A | 215 | Vacuolar protein sorting 29; alpha-beta-BETA-alpha | 99.66 | |
| 2xmo_A | 443 | LMO2642 protein; phosphodiesterase, hydrolase; 1.7 | 99.64 | |
| 2kkn_A | 178 | Uncharacterized protein; protein phosphatase 2A ho | 99.6 | |
| 2nxf_A | 322 | Putative dimetal phosphatase; dinuclear metal cent | 99.54 | |
| 1s3l_A | 190 | Hypothetical protein MJ0936; phosphodiesterase, nu | 99.54 | |
| 1ute_A | 313 | Protein (II purple acid phosphatase); tartrate res | 99.49 | |
| 1su1_A | 208 | Hypothetical protein YFCE; structural genomics, ph | 99.44 | |
| 3qfm_A | 270 | SAPH, putative uncharacterized protein; sandwich f | 99.42 | |
| 3ck2_A | 176 | Conserved uncharacterized protein (predicted phosp | 99.39 | |
| 1nnw_A | 252 | Hypothetical protein; structural genomics, PSI, pr | 99.36 | |
| 3rl5_A | 296 | Metallophosphoesterase mpped2; alpha-beta fold, me | 99.3 | |
| 3rqz_A | 246 | Metallophosphoesterase; PSI-biology, midwest cente | 99.26 | |
| 3tgh_A | 342 | Glideosome-associated protein 50; phosphatase fold | 99.21 | |
| 1xzw_A | 426 | Purple acid phosphatase; hydrolase; HET: NAG FUC M | 98.97 | |
| 2qfp_A | 424 | Purple acid phosphatase; binuclear, Fe-Zn, hydrola | 98.92 | |
| 2wdc_A | 562 | SOXB, sulfur oxidation protein SOXB; sulfur-sulfur | 98.9 | |
| 3ive_A | 509 | Nucleotidase; structural genomics, PSI-2, protein | 98.85 | |
| 1hp1_A | 516 | 5'-nucleotidase; metallophosphatase, dinuclear, me | 98.83 | |
| 2z1a_A | 552 | 5'-nucleotidase; metal-binding, nucleotide-binding | 98.82 | |
| 1xm7_A | 195 | Hypothetical protein AQ_1665; structural genomics, | 98.73 | |
| 3qfk_A | 527 | Uncharacterized protein; structural genomics, cent | 98.65 | |
| 4h2g_A | 546 | 5'-nucleotidase; dimer, hydrolase, phosphatase, ex | 98.57 | |
| 3jyf_A | 339 | 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- n | 98.5 | |
| 3ztv_A | 579 | NAD nucleotidase, NADN; hydrolase, NAD pyrophospha | 98.43 | |
| 3gve_A | 341 | YFKN protein; alpha-beta-BETA-alpha sandwich, stru | 98.41 | |
| 1g5b_A | 221 | Serine/threonine protein phosphatase; bacteriophag | 98.01 | |
| 2qjc_A | 262 | Diadenosine tetraphosphatase, putative; putative d | 97.93 | |
| 3c9f_A | 557 | 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, p | 97.87 | |
| 2dfj_A | 280 | Diadenosinetetraphosphatase; helices and strands m | 97.76 | |
| 1t71_A | 281 | Phosphatase, conserved HYPO; crystal, X-RAY crysta | 97.75 | |
| 4h1s_A | 530 | 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo | 97.69 | |
| 3e0j_A | 476 | DNA polymerase subunit delta-2; DNA polymerase del | 97.4 | |
| 1t70_A | 255 | Phosphatase; crystal, X-RAY crystallography, struc | 97.4 | |
| 2z72_A | 342 | Protein-tyrosine-phosphatase; cold-active enzyme, | 97.37 | |
| 2z06_A | 252 | Putative uncharacterized protein TTHA0625; metal b | 97.16 | |
| 2ie4_C | 309 | PP2A-alpha;, serine/threonine-protein phosphatase | 97.1 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 96.98 | |
| 1fjm_A | 330 | Protein serine/threonine phosphatase-1 (alpha ISO | 96.91 | |
| 3h63_A | 315 | Serine/threonine-protein phosphatase 5; metalloenz | 96.82 | |
| 3e7a_A | 299 | PP-1A, serine/threonine-protein phosphatase PP1-al | 96.72 | |
| 3icf_A | 335 | PPT, serine/threonine-protein phosphatase T; IRO m | 96.72 | |
| 3ll8_A | 357 | Serine/threonine-protein phosphatase 2B catalytic | 96.48 | |
| 1aui_A | 521 | Calcineurin, serine/threonine phosphatase 2B; hydr | 96.48 | |
| 1b34_A | 119 | Protein (small nuclear ribonucleoprotein SM D1); s | 96.38 | |
| 1b34_A | 119 | Protein (small nuclear ribonucleoprotein SM D1); s | 95.13 | |
| 2yeq_A | 527 | Apased, PHOD, alkaline phosphatase D; hydrolase, p | 94.15 | |
| 3flo_A | 460 | DNA polymerase alpha subunit B; protein-protein co | 93.56 |
| >4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-82 Score=688.44 Aligned_cols=390 Identities=45% Similarity=0.819 Sum_probs=336.4
Q ss_pred CCCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q 006878 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLND 86 (627)
Q Consensus 7 ~~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~ 86 (627)
..+.++|||+|+||+|||+...+..++.|.+.+|+++++.|.+++||+||++|||||...|+.+++..+++.|+++|+||
T Consensus 8 ~~~~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~p~~~~~~~~~~~lr~~~~g~ 87 (417)
T 4fbw_A 8 LHNENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGD 87 (417)
T ss_dssp --CTTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBSS
T ss_pred CCCCCCeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHhcccC
Confidence 34568899999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred Cccceeeechhhhhc-ccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccce
Q 006878 87 RPVQFQVVSDQAVNF-QNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEI 165 (627)
Q Consensus 87 ~p~~~~~lsd~~~~f-~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i 165 (627)
+||+||+|||++.+| .+.|+++||+|||++++||||+|+||||.+.+.+..+++++|+.+|++++||+.. ..+++
T Consensus 88 ~~~~~e~L~d~~~~~~~~~~~~~n~~d~~~~~gIpV~~I~GNHD~~~~~~~~s~~~lL~~~g~v~l~g~~~----~~~~i 163 (417)
T 4fbw_A 88 KPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVP----ENDNI 163 (417)
T ss_dssp CCCCCEECC------------CCGGGCTTBCBSSCEEECCCGGGC-----CCCHHHHHHHTTSCEECCCCC-------CE
T ss_pred CcccceeccchhhhcccccccccccccccccCCCeEEEEecCCCCccccccccHHHHhccCCeEEEeCCcc----cCCce
Confidence 999999999999999 4789999999999999999999999999998877678999999999999999853 34678
Q ss_pred eEEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcC
Q 006878 166 TVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245 (627)
Q Consensus 166 ~~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~ 245 (627)
.+.|+++++|+++++|||+||++++++.+++.+ +.+++++|... .++||||+|+||++.++++.+++++.+++.+
T Consensus 164 ~~~pv~l~~g~~~valyG~~~~~d~rl~r~~~~-~~v~~~~p~~~----~~~~~nIlvlH~~~~~~~~~~yip~~l~~~~ 238 (417)
T 4fbw_A 164 VVSPILLQKGFTKLALYGISNVRDERLYHSFRE-NKVKFLRPDLY----RDEWFNLLTVHQNHSAHTPTSYLPESFIQDF 238 (417)
T ss_dssp EECCEEEEETTEEEEEEEECCCCHHHHHHHHHT-TCEEEEEESTT----TTTSEEEEEEESCSSCSSSSSSCCGGGSCTT
T ss_pred eEEeEEEEecCceEEEEeccCCchhhhhhhhhh-hhhhhcCcccc----cCCceEEEEecCCccCCCCcccCchhHhhcC
Confidence 899999999999999999999999999988876 46777776421 3689999999999998877789999999999
Q ss_pred CCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEEEECCCCCcEEEEEEEeccC
Q 006878 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDE 325 (627)
Q Consensus 246 ~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~tvRpf~~~~i~L~~~ 325 (627)
+|||+|||+|.+++.+...+..+.+++||||+++++++++|.++|+|+||+|+++.+++++|||+++|||++.+|+|++.
T Consensus 239 ~DyvalGH~H~~~~~~~~~~~~g~~i~~PGS~~~~s~~e~E~~~kg~~lvei~~~~~~~e~i~l~~~Rpf~~~~v~L~~~ 318 (417)
T 4fbw_A 239 YDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEV 318 (417)
T ss_dssp CSEEEEESCCSCEEEEEEETTTTEEEEECCCSSCSSCCHHHHSCCEEEEEEEETTEEEEEEEECSSSCCEEEEEEEGGGC
T ss_pred CCEEEecCccccceeccccCCCCEEEEECCCCCcCCCccccCCCCEEEEEEEECCEEEEEEEECCCcccEEEEEEEeecc
Confidence 99999999999987654444556899999999999999877789999999999999999999999999999999999998
Q ss_pred CCCCC--CCHhHHHHHHHHHHHHHHHHhhhccc---------ccccCCCCeEEEEEeecc-ccccChhhhhhhhhhcccC
Q 006878 326 ADIDP--DDQNSILEHLDKVVRNLIERSSKKTV---------NRSELKLPLVRIKVDYSG-FMTINPQRFGQKYVGKVAN 393 (627)
Q Consensus 326 ~~~~~--~~~~~i~~~l~~~v~~~i~~a~~~~~---------~~~~~~~PLiRLrV~~sg-~~~~n~~rfg~~f~~~vaN 393 (627)
.++++ ++.++|.++|.++|++||++|++++. ...++++|||||||+||| |+++||+||||+|+|||||
T Consensus 319 ~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~plirl~v~~~~~~~~~n~~~f~~~~~~~van 398 (417)
T 4fbw_A 319 SSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVAN 398 (417)
T ss_dssp TTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCTTSCCCCCCEEEEEEECTTTCCCCCHHHHHHTTTTTCSC
T ss_pred cccCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCceeEEEEEecCCccccCHHHHHHhhcccccC
Confidence 66664 36889999999999999999988753 234688999999999996 9999999999999999999
Q ss_pred ccceEEEEeccc
Q 006878 394 PQDILIFSKSSK 405 (627)
Q Consensus 394 p~dil~f~~~~~ 405 (627)
|+|||+|+|+++
T Consensus 399 ~~d~~~~~~~~~ 410 (417)
T 4fbw_A 399 ATDVVQFYLKKV 410 (417)
T ss_dssp TTCSEEEECC--
T ss_pred hHHeeeeeeccC
Confidence 999999998754
|
| >4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A* | Back alignment and structure |
|---|
| >3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A | Back alignment and structure |
|---|
| >3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A* | Back alignment and structure |
|---|
| >3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C | Back alignment and structure |
|---|
| >2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A | Back alignment and structure |
|---|
| >3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A | Back alignment and structure |
|---|
| >3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A | Back alignment and structure |
|---|
| >1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 | Back alignment and structure |
|---|
| >2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6 | Back alignment and structure |
|---|
| >1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A | Back alignment and structure |
|---|
| >2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7 | Back alignment and structure |
|---|
| >2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima} | Back alignment and structure |
|---|
| >2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12 | Back alignment and structure |
|---|
| >1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A | Back alignment and structure |
|---|
| >1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A* | Back alignment and structure |
|---|
| >1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7 | Back alignment and structure |
|---|
| >3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A* | Back alignment and structure |
|---|
| >3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7 | Back alignment and structure |
|---|
| >1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A | Back alignment and structure |
|---|
| >3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A* | Back alignment and structure |
|---|
| >3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0 | Back alignment and structure |
|---|
| >3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
| >1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1 | Back alignment and structure |
|---|
| >2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A* | Back alignment and structure |
|---|
| >2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A | Back alignment and structure |
|---|
| >3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A* | Back alignment and structure |
|---|
| >1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A | Back alignment and structure |
|---|
| >2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2 | Back alignment and structure |
|---|
| >1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8 | Back alignment and structure |
|---|
| >3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
| >4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A* | Back alignment and structure |
|---|
| >3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
| >3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A* | Back alignment and structure |
|---|
| >3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
| >1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3 | Back alignment and structure |
|---|
| >2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei} | Back alignment and structure |
|---|
| >3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2 | Back alignment and structure |
|---|
| >2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A} | Back alignment and structure |
|---|
| >1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9 | Back alignment and structure |
|---|
| >4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9 | Back alignment and structure |
|---|
| >2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A | Back alignment and structure |
|---|
| >2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A | Back alignment and structure |
|---|
| >2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C* | Back alignment and structure |
|---|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
| >1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3 | Back alignment and structure |
|---|
| >3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A | Back alignment and structure |
|---|
| >3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A* | Back alignment and structure |
|---|
| >3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A | Back alignment and structure |
|---|
| >1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3 | Back alignment and structure |
|---|
| >1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A | Back alignment and structure |
|---|
| >1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A | Back alignment and structure |
|---|
| >2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 627 | ||||
| d1ii7a_ | 333 | d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus | 2e-34 | |
| d2yvta1 | 257 | d.159.1.6 (A:4-260) Uncharacterized protein Aq_195 | 3e-17 | |
| d2hy1a1 | 256 | d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide pho | 3e-06 | |
| d1uf3a_ | 228 | d.159.1.6 (A:) Hypothetical protein TT1561 {Thermu | 3e-06 | |
| d2nxfa1 | 320 | d.159.1.12 (A:3-322) Uncharacterized C17orf48 homo | 6e-06 | |
| d3d03a1 | 271 | d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ | 4e-04 | |
| d1utea_ | 302 | d.159.1.1 (A:) Mammalian purple acid phosphatase { | 8e-04 |
| >d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-dependent phosphatases superfamily: Metallo-dependent phosphatases family: DNA double-strand break repair nuclease domain: Mre11 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 131 bits (329), Expect = 2e-34
Identities = 72/379 (18%), Positives = 125/379 (32%), Gaps = 58/379 (15%)
Query: 14 RILVATDCHLGYMEKDEIRRH-DSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72
+ D HLGY + + +R + EAF+ IA Q+ VDF+L+ GDLFH ++PS TL
Sbjct: 2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTL 61
Query: 73 VKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132
KAI +L+ +PVF+I GNHD
Sbjct: 62 KKAIALLQIPK--------------------------------EHSIPVFAIEGNHDRTQ 89
Query: 133 GVDNLSAVDILSACNLVNYFGKMVLGGSGV----GEITVYPILIRKGSTAVALYGLGNIR 188
S +++L LV G + L++ + ++G+ +
Sbjct: 90 R--GPSVLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMS 147
Query: 189 DERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDF 248
+ + + V + + I LP +
Sbjct: 148 SAWFEANKEILKRLFR------PTDNAILMLHQGVREVSEARGEDYFEIGLGDLPEGYLY 201
Query: 249 VVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIP 308
GH H+ E G + PGS + E + + + +
Sbjct: 202 YALGHIHK----RYETSYSGSPVVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYI 257
Query: 309 LTSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELK----LP 364
+ +P + EI ++ D+ E + K ++ LI K R +
Sbjct: 258 VEDFKP-RFVEIKVRPFIDVKIKGS---EEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFD 313
Query: 365 LVRIKVDYS-GFMTINPQR 382
L IK + ++ I+ R
Sbjct: 314 LTEIKELLNVEYLKIDTWR 332
|
| >d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]} Length = 257 | Back information, alignment and structure |
|---|
| >d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 256 | Back information, alignment and structure |
|---|
| >d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} Length = 228 | Back information, alignment and structure |
|---|
| >d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]} Length = 320 | Back information, alignment and structure |
|---|
| >d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]} Length = 271 | Back information, alignment and structure |
|---|
| >d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]} Length = 302 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 627 | |||
| d1ii7a_ | 333 | Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 100.0 | |
| d2yvta1 | 257 | Uncharacterized protein Aq_1956 {Aquifex aeolicus | 99.81 | |
| d1uf3a_ | 228 | Hypothetical protein TT1561 {Thermus thermophilus | 99.75 | |
| d2hy1a1 | 256 | Rv0805 cyclic nucleotide phosphodiesterase {Mycoba | 99.73 | |
| d3d03a1 | 271 | Glycerophosphodiesterase GpdQ {Enterobacter aeroge | 99.71 | |
| d1z2wa1 | 182 | Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus | 99.49 | |
| d1s3la_ | 165 | Putative phosphodiesterase MJ0936 {Methanococcus j | 99.48 | |
| d2a22a1 | 193 | Vacuolar protein sorting 29, VPS29 {Cryptosporidiu | 99.46 | |
| d2nxfa1 | 320 | Uncharacterized C17orf48 homolog zgc:64213 {Zebraf | 99.42 | |
| d1su1a_ | 184 | Phosphodiesterase yfcE {Escherichia coli [TaxId: 5 | 99.37 | |
| d1nnwa_ | 251 | Hypothetical protein PF1291 {Archaeon Pyrococcus f | 99.3 | |
| d3ck2a1 | 173 | Uncharacterized protein SP1879 {Streptococcus pneu | 99.28 | |
| d1utea_ | 302 | Mammalian purple acid phosphatase {Pig (Sus scrofa | 99.21 | |
| d1usha2 | 337 | 5'-nucleotidase (syn. UDP-sugar hydrolase), N-term | 98.74 | |
| d2qfra2 | 312 | Plant purple acid phosphatase, catalytic domain {K | 98.74 | |
| d3c9fa2 | 322 | 5'-nucleotidase (syn. UDP-sugar hydrolase), N-term | 98.04 | |
| d1xm7a_ | 188 | Hypothetical protein aq_1666 {Aquifex aeolicus [Ta | 97.99 | |
| d2z1aa2 | 302 | 5'-nucleotidase (syn. UDP-sugar hydrolase), N-term | 97.97 | |
| d1g5ba_ | 219 | lambda ser/thr protein phosphatase {Bacteriophage | 97.27 | |
| d1jk7a_ | 294 | Protein phosphatase-1 (PP-1) {Human (Homo sapiens) | 86.14 | |
| d3c5wc1 | 288 | Protein phosphatase 2A catalytic subunit alpha iso | 85.13 | |
| d1auia_ | 473 | Protein phosphatase-2B (PP-2B, calcineurin A subun | 82.17 | |
| d1s95a_ | 324 | Serine/threonine protein phosphatase 5, PP5 {Human | 81.04 |
| >d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-dependent phosphatases superfamily: Metallo-dependent phosphatases family: DNA double-strand break repair nuclease domain: Mre11 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.8e-32 Score=278.84 Aligned_cols=257 Identities=26% Similarity=0.320 Sum_probs=181.9
Q ss_pred eEEEEEcCCCCCCCCC-chhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccce
Q 006878 13 VRILVATDCHLGYMEK-DEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 13 mKILh~SD~HLG~~~~-d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~ 91 (627)
|||||+||+|||+... .+.|.+|.+.+|+++++.|++++||+||++|||||...|+..++..+.+.|..+.
T Consensus 1 Mkilh~SDlHlG~~~~~~~~~~~~~~~~l~~iv~~a~~~~~D~vli~GDlfd~~~~~~~~~~~~~~~~~~l~-------- 72 (333)
T d1ii7a_ 1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPK-------- 72 (333)
T ss_dssp CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHH--------
T ss_pred CEEEEEecCcCCCCCcCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHhhHH--------
Confidence 8999999999998754 5678899999999999999999999999999999999999999988888887762
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccce-----e
Q 006878 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEI-----T 166 (627)
Q Consensus 92 ~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i-----~ 166 (627)
..++|||+|+||||.+.+.. +.+.+++..+++++++...... ....+ .
T Consensus 73 ------------------------~~~i~v~~i~GNHD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 125 (333)
T d1ii7a_ 73 ------------------------EHSIPVFAIEGNHDRTQRGP--SVLNLLEDFGLVYVIGMRKEKV-ENEYLTSERLG 125 (333)
T ss_dssp ------------------------TTTCCEEEECCTTTCCSSSC--CHHHHHHHTTSCEECEEESSCC-CSSSEEEEECT
T ss_pred ------------------------hcCCcEEEeCCCCccccchh--hHHHHHHhCCceEEccCccccc-ccceecccccC
Confidence 45799999999999987543 5677888999988887643110 00000 0
Q ss_pred EEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCC-----Ccccccccc
Q 006878 167 VYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTN-----PKNAINEHF 241 (627)
Q Consensus 167 ~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~-----~~~~i~e~~ 241 (627)
..+.++......+.++|+++.....+..... ..... ......+|+++|+...+.. ....+....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~ 194 (333)
T d1ii7a_ 126 NGEYLVKGVYKDLEIHGMKYMSSAWFEANKE---ILKRL--------FRPTDNAILMLHQGVREVSEARGEDYFEIGLGD 194 (333)
T ss_dssp TSCEEEEEEETTEEEEEECCCCHHHHHSSTT---HHHHH--------CCCCSSEEEEEECCBHHHHHTTTCCCCSBCGGG
T ss_pred cceeEeecccCcceeccccchhHHHHHHHHh---hhhhh--------cCCCccceEEEeeccccccccccccceeccccc
Confidence 1122333334457788988887654432111 01111 1246789999999765421 112234566
Q ss_pred CCcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCC-----------ceEEEEEECC
Q 006878 242 LPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKEN-----------QYRPTKIPLT 310 (627)
Q Consensus 242 lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~-----------~~~~e~IpL~ 310 (627)
++.++|||++||+|.++. ....+..++||||++++++.|. ...+++.++.+..+ ..+.+++++.
T Consensus 195 ~~~~~d~v~lGH~H~~~~----~~~~~~~i~y~GS~~~~~~~E~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (333)
T d1ii7a_ 195 LPEGYLYYALGHIHKRYE----TSYSGSPVVYPGSLERWDFGDY-EVRYEWDGIKFKERYGVNKGFYIVEDFKPRFVEIK 269 (333)
T ss_dssp SCTTCSEEEEESCSSCEE----EEETTEEEEECCCSSCCSGGGC-SEEEEECSSSEEEEECCCCEEEEEETTEEEEEECC
T ss_pred CccccceEEecCcccceE----EeeCCeEEEEeCCceeeccccc-cccCceEEEEEecCcccccceEEcccCceeEEECC
Confidence 788999999999999754 3223578999999999999863 34566666555432 1356778887
Q ss_pred CCCcEEEEEEE
Q 006878 311 SVRPFEYTEII 321 (627)
Q Consensus 311 tvRpf~~~~i~ 321 (627)
.|||+..++.
T Consensus 270 -~~~~~~~~~~ 279 (333)
T d1ii7a_ 270 -VRPFIDVKIK 279 (333)
T ss_dssp -CCCEEEEEEE
T ss_pred -ccceEEEEEc
Confidence 5888755553
|
| >d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]} | Back information, alignment and structure |
|---|
| >d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
| >d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
| >d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Candida albicans [TaxId: 5476]} | Back information, alignment and structure |
|---|
| >d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]} | Back information, alignment and structure |
|---|
| >d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo sapiens), beta isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|