Citrus Sinensis ID: 006937
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 625 | 2.2.26 [Sep-21-2011] | |||||||
| O82039 | 932 | Probable UDP-N-acetylgluc | N/A | no | 1.0 | 0.670 | 0.883 | 0.0 | |
| Q8RVB2 | 931 | Probable UDP-N-acetylgluc | N/A | no | 1.0 | 0.671 | 0.873 | 0.0 | |
| Q96301 | 914 | Probable UDP-N-acetylgluc | yes | no | 0.992 | 0.678 | 0.849 | 0.0 | |
| Q8LP10 | 918 | Probable UDP-N-acetylgluc | N/A | no | 0.932 | 0.635 | 0.836 | 0.0 | |
| O82422 | 944 | Probable UDP-N-acetylgluc | N/A | no | 0.926 | 0.613 | 0.837 | 0.0 | |
| Q6YZI0 | 927 | Probable UDP-N-acetylgluc | yes | no | 0.968 | 0.652 | 0.796 | 0.0 | |
| Q9M8Y0 | 977 | Probable UDP-N-acetylgluc | no | no | 0.808 | 0.516 | 0.291 | 1e-57 | |
| O18158 | 1151 | UDP-N-acetylglucosamine-- | yes | no | 0.875 | 0.475 | 0.272 | 3e-53 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.884 | 0.528 | 0.261 | 8e-53 | |
| P56558 | 1036 | UDP-N-acetylglucosamine-- | yes | no | 0.884 | 0.533 | 0.261 | 9e-53 |
| >sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1175 bits (3039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/625 (88%), Positives = 590/625 (94%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EKDV NG+E D + +NGFLKG QS + GSPV + K FEGKDA++YANILRS
Sbjct: 1 MAWTEKDVENGKESDSLGNNGFLKGVQSSSDSKGSPVRISPVKKSFEGKDAITYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VL+KDSG++E+ IGKGICLQMQNMGRLAF+SF+EA+KLDPQNACA T
Sbjct: 61 RNKFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRLVEAAESY KAL ADPSYKPAAECLAIVLTD+GTSLKLAGN+Q+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA
Sbjct: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
L+IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 361 LTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISL 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL+EAHRDWG RFMRLY QY SWDN
Sbjct: 421 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGSDDKLYEAHRDWGWRFMRLYQQYNSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
+KDPER LVIGYVSPDYFTHSVSYFIEAPL YHDY NYKVV+YSAVVKADAKT RFR+KV
Sbjct: 481 SKDPERQLVIGYVSPDYFTHSVSYFIEAPLAYHDYANYKVVIYSAVVKADAKTNRFRDKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+KKGG+WRDIYGIDEKKV++M+REDK+DI++ELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 541 LKKGGVWRDIYGIDEKKVSSMIREDKVDIMIELTGHTANNKLGMMACRPAPVQVTWIGYP 600
Query: 601 NTTGLPTIDYRITDSLADPPETKQK 625
NTTGLPTIDYRITDS+ADPP TKQK
Sbjct: 601 NTTGLPTIDYRITDSMADPPSTKQK 625
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Petunia hybrida (taxid: 4102) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: - |
| >sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1116 bits (2886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/625 (87%), Positives = 585/625 (93%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EKDV NG+E + + +NGFLKG QS G+ GSP + K FE KDA++YANILRS
Sbjct: 1 MAWTEKDVENGKESESLGNNGFLKGGQSSSGSKGSPGRISHVKKIFEDKDAITYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VLEKDS ++E+ IGKGICLQMQN GRLAF+SFSEA+K+DPQNACA T
Sbjct: 61 RNKFVDALAIYESVLEKDSKSIESLIGKGICLQMQNTGRLAFESFSEAIKVDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRLVEAAESY KAL ADPSY PAAECLAIVLTD+GTSLKLAGNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYEKALKADPSYTPAAECLAIVLTDIGTSLKLAGNTQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVI+KNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAALERPMYAEAYCNMGVIFKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL YNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALCYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+A
Sbjct: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLA 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISL 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL+EAHRDWG+RFM+LY QYTSWDN
Sbjct: 421 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGTDDKLYEAHRDWGRRFMKLYPQYTSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
+K PERPLVIGYVSPDYFTHSVSYFIEAPL +HDY NYKVVVYS+VVKADAKT RFR+KV
Sbjct: 481 SKVPERPLVIGYVSPDYFTHSVSYFIEAPLAHHDYTNYKVVVYSSVVKADAKTNRFRDKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
MKKGG+WRDIYGIDEKKV++M+REDK+DI+VELTGHTANNKLG MAC+PAPVQVTWIGYP
Sbjct: 541 MKKGGLWRDIYGIDEKKVSSMIREDKVDIMVELTGHTANNKLGTMACRPAPVQVTWIGYP 600
Query: 601 NTTGLPTIDYRITDSLADPPETKQK 625
NTTGLPTIDYRITD++ADPP KQK
Sbjct: 601 NTTGLPTIDYRITDAMADPPNAKQK 625
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1108 bits (2867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/625 (84%), Positives = 569/625 (91%), Gaps = 5/625 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
M +E D RER PV +NGF G +S ++G + + K +G D LSYANILR+
Sbjct: 1 MVGLEDDTE--RERSPVVENGFSNGSRSSSSSAG---VLSPSRKVTQGNDTLSYANILRA 55
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE +LEKDS NVEAHIGKGICLQ QN G LAFD FSEA++LDP NACA T
Sbjct: 56 RNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALT 115
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGIL+K+EGRLVEAAESY KAL AD SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 116 HCGILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKY 175
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVIYKNRGD
Sbjct: 176 YEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGD 235
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LE AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD+ QGVAYYKKALYYNWHYA
Sbjct: 236 LEMAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVAYYKKALYYNWHYA 295
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV+YKDRDNLDKAVECYQMA
Sbjct: 296 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVLYKDRDNLDKAVECYQMA 355
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNF+QSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEA+NNLGVLYRDAG+I++
Sbjct: 356 LSIKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITM 415
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AIDAYE+CLKIDPDSRNAGQNRLLAMNYINEG DDKLFEAHRDWG RF RL+ QYTSWDN
Sbjct: 416 AIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLFEAHRDWGWRFTRLHPQYTSWDN 475
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
KDPERP+ IGY+SPD+FTHSVSYFIEAPL +HDY YKVVVYSAVVKADAKT RFR+KV
Sbjct: 476 LKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTYRFRDKV 535
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+KKGG+W+DIYGIDEKK+A+MVREDKIDILVELTGHTANNKLG MAC+PAPVQVTWIGYP
Sbjct: 536 LKKGGVWKDIYGIDEKKIASMVREDKIDILVELTGHTANNKLGTMACRPAPVQVTWIGYP 595
Query: 601 NTTGLPTIDYRITDSLADPPETKQK 625
NTTGLPT+DYRITDSLADPP+TKQK
Sbjct: 596 NTTGLPTVDYRITDSLADPPDTKQK 620
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q8LP10|SPY_EUSER Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Eustoma exaltatum subsp. russellianum GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1038 bits (2683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/605 (83%), Positives = 541/605 (89%), Gaps = 22/605 (3%)
Query: 21 GFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSG 80
G LKG QS + GSPV K EGK+A++YA ILRSRNKFVDALA+YE LEKDS
Sbjct: 12 GLLKGVQSSSDSKGSPVK-----KSLEGKEAITYAKILRSRNKFVDALAIYE--LEKDSK 64
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
NVEAHIGKGICLQ QN G LAFD FSEA++LDP NACA THCGILYKDEGRLVEAA SY
Sbjct: 65 NVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILYKDEGRLVEAA-SYQ 123
Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200
KAL ADPSYKPAAECLA VL DLGTSLK GNTQ+GIQKYYEA+KIDPHYAPA YNLGVV
Sbjct: 124 KALQADPSYKPAAECLATVLNDLGTSLK--GNTQEGIQKYYEAVKIDPHYAPACYNLGVV 181
Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260
YSE+MQYD AL CYE+AA E P YA+AYCN G+IYKNRGDL CLAVSPNFEI
Sbjct: 182 YSEMMQYDVALSCYERAATESPTYADAYCNTGIIYKNRGDL---------CLAVSPNFEI 232
Query: 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320
AKNNM IALTDLGTK KLEGDI+QGVAYYKKALYYNWHY+DAMYNLGVAYGEMLKFDMAI
Sbjct: 233 AKNNMGIALTDLGTKEKLEGDIDQGVAYYKKALYYNWHYSDAMYNLGVAYGEMLKFDMAI 292
Query: 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380
+F ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ ALSIKPNFSQSLNNLGVV+TV
Sbjct: 293 IFDELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQKALSIKPNFSQSLNNLGVVFTV 352
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
QGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+I LAI+AYEQCLKIDPDSRNAGQ
Sbjct: 353 QGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNIFLAIEAYEQCLKIDPDSRNAGQ 412
Query: 441 NRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTH 500
NRLLAMNYINEG DD+L+EAHRDWG RFMRLYSQYTSWDN KDPERPLVIGY SPD+F
Sbjct: 413 NRLLAMNYINEGADDRLYEAHRDWGGRFMRLYSQYTSWDNPKDPERPLVIGYGSPDHF-- 470
Query: 501 SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAA 560
+SYFIEAPL+YHDY+N+KVV YSAVVKADAKT RFRE+V+KKGGIWRDIYGIDEKKVA+
Sbjct: 471 -LSYFIEAPLLYHDYENFKVVTYSAVVKADAKTNRFRERVLKKGGIWRDIYGIDEKKVAS 529
Query: 561 MVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPP 620
M+REDK+DIL+ELTGHTANNKLGMMAC+PAP+QVTWIGYPNTTGLPTIDYRITDSLADP
Sbjct: 530 MIREDKVDILIELTGHTANNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPL 589
Query: 621 ETKQK 625
+TKQK
Sbjct: 590 DTKQK 594
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins (By similarity). May function as a negative regulator of GA signal transduction during vernalization, inhibiting adventitious shoot elongation during vernalization. Eustoma exaltatum subsp. russellianum (taxid: 52518) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|O82422|SPY_HORVU Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Hordeum vulgare GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/579 (83%), Positives = 533/579 (92%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
EG DAL YANILRSRNKF DAL LY VL+KD NVEA IGKGICLQ Q++ R A D F+
Sbjct: 33 EGTDALRYANILRSRNKFADALQLYTTVLDKDGANVEALIGKGICLQAQSLPRQALDCFT 92
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
EAVK+DP+NACA THCG++YKDEG LVEAAE+Y KA SADPSYK A+E LAIVLTDLGTS
Sbjct: 93 EAVKVDPKNACALTHCGMIYKDEGHLVEAAEAYQKARSADPSYKAASEFLAIVLTDLGTS 152
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
LKLAGNT+DGIQKY EAL++D HYAPAYYNLGVVYSE+MQ+D AL CYEKAALERP+YAE
Sbjct: 153 LKLAGNTEDGIQKYCEALEVDSHYAPAYYNLGVVYSEMMQFDVALTCYEKAALERPLYAE 212
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286
AYCNMGVIYKNRG+L++AIACY+RCL +SPNFEIAKNNMAIALTDLGTKVK+EGDINQGV
Sbjct: 213 AYCNMGVIYKNRGELDAAIACYDRCLTISPNFEIAKNNMAIALTDLGTKVKIEGDINQGV 272
Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346
AYYKKAL+YNWHYADAMYNLGVAYGEML F+MAIVFYELA HFNP CAEACNNLGVIYKD
Sbjct: 273 AYYKKALFYNWHYADAMYNLGVAYGEMLNFEMAIVFYELALHFNPRCAEACNNLGVIYKD 332
Query: 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYN
Sbjct: 333 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAYN 392
Query: 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
NLGVLYRDAGSI+L++ AYE+CL+IDPDSRNAGQNRLLAMNYI+EG DDKL++AHR+WGK
Sbjct: 393 NLGVLYRDAGSITLSVQAYERCLQIDPDSRNAGQNRLLAMNYIDEGSDDKLYDAHREWGK 452
Query: 467 RFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAV 526
RFM+LY+QYTSWDN K +RPLVIGYVSPD+FTHSVSYF+EAPL +HDY KVVVYS V
Sbjct: 453 RFMKLYAQYTSWDNPKVADRPLVIGYVSPDFFTHSVSYFVEAPLTHHDYTKCKVVVYSGV 512
Query: 527 VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMA 586
VKADAKT+RF++KV+KKGG+WRDIYGIDEKKVA +VREDK+DILVELTGHTANNKLG MA
Sbjct: 513 VKADAKTLRFKDKVLKKGGVWRDIYGIDEKKVATLVREDKVDILVELTGHTANNKLGTMA 572
Query: 587 CQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQK 625
C+PAP+QVTWIGYPNTTGLP IDYRITDSLAD P T QK
Sbjct: 573 CRPAPIQVTWIGYPNTTGLPAIDYRITDSLADSPNTNQK 611
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa subsp. japonica GN=SPY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1029 bits (2660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/619 (79%), Positives = 548/619 (88%), Gaps = 14/619 (2%)
Query: 7 DVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVD 66
D S GRE + V +P +G V L +GKD L YANILRSRNKF +
Sbjct: 7 DSSEGRESNGV-----------VPERNGGAVPAKQQL---DGKDTLRYANILRSRNKFAE 52
Query: 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126
AL LY VLEKD NVEA IGKGICLQ Q++ A + F+EAV++DP NACA T+CG++Y
Sbjct: 53 ALQLYNNVLEKDEANVEALIGKGICLQAQSLPMQAIECFNEAVRIDPGNACALTYCGMIY 112
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
KDEG LVEAAE+Y KA +ADPSYKPAAE LAIVLTDLGTSLKLAGNT++GIQKY EAL++
Sbjct: 113 KDEGHLVEAAEAYQKARNADPSYKPAAEFLAIVLTDLGTSLKLAGNTEEGIQKYCEALEV 172
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
D HYAPAYYNLGVVYSE+MQ+D AL CYEKAALERP+YAEAYCNMGVIYKNRG+LE+AIA
Sbjct: 173 DSHYAPAYYNLGVVYSEMMQFDLALTCYEKAALERPLYAEAYCNMGVIYKNRGELEAAIA 232
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
CYERCL +SPNFEIAKNNMAIALTDLGTKVK+EGDINQGVAYYKKAL+YNWHYADAMYNL
Sbjct: 233 CYERCLTISPNFEIAKNNMAIALTDLGTKVKIEGDINQGVAYYKKALFYNWHYADAMYNL 292
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
GVAYGEML F+MAIVFYELA HFNP CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN
Sbjct: 293 GVAYGEMLNFEMAIVFYELALHFNPRCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 352
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
FSQSLNNLGVVYTVQGKMDAA+ MI+KAI AN TYAEAYNNLGVLYRDAGSI+ A+ AYE
Sbjct: 353 FSQSLNNLGVVYTVQGKMDAASSMIQKAIFANSTYAEAYNNLGVLYRDAGSITSAVQAYE 412
Query: 427 QCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPER 486
+CL+IDPDSRNAGQNRLLA+NYI+EG DDKL++AHR+WGKRF++LY QYTSWDN K +R
Sbjct: 413 KCLQIDPDSRNAGQNRLLALNYIDEGFDDKLYQAHREWGKRFLKLYPQYTSWDNPKVADR 472
Query: 487 PLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGI 546
PLVIGYVSPDYFTHSVSYFIEAPL +HDY NYKVVVYS VVKADAKT+RF++KV+KKGG+
Sbjct: 473 PLVIGYVSPDYFTHSVSYFIEAPLAHHDYSNYKVVVYSGVVKADAKTLRFKDKVLKKGGL 532
Query: 547 WRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLP 606
WRDIYGIDEKKVA++VREDK+DILVELTGHTANNKLG MAC+PAP+QVTWIGYPNTTGLP
Sbjct: 533 WRDIYGIDEKKVASLVREDKVDILVELTGHTANNKLGTMACRPAPIQVTWIGYPNTTGLP 592
Query: 607 TIDYRITDSLADPPETKQK 625
TIDYRITDSLADPP+T QK
Sbjct: 593 TIDYRITDSLADPPDTTQK 611
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 166/569 (29%), Positives = 262/569 (46%), Gaps = 64/569 (11%)
Query: 98 GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
GRL A +A+ L+P AH++ G L K +G + EA Y +A+ P++
Sbjct: 169 GRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTF------ 222
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
AI ++L +G+ +Q Y EA+K+ P + AY NLG VY L + A+ CY+
Sbjct: 223 -AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQ 281
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
A RP A A+ N+ IY +G L+ AI Y++ L+ P F A NN+ AL D+G
Sbjct: 282 HALQMRPNSAMAFGNIASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGR- 340
Query: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
+++ V Y + L ++ AM NLG Y E A ++ +
Sbjct: 341 ------VDEAVRCYNQCLALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSA 394
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
NNL +IYK + N A+ CY L I P + +L N G Y G++ A + AI
Sbjct: 395 PFNNLAIIYKQQGNYSDAISCYNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAI 454
Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD- 454
PT AEA+ NL Y+D+G + AI +Y+Q L + PD A N L + + D
Sbjct: 455 NFRPTMAEAHANLASAYKDSGHVEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDR 514
Query: 455 DKLFEAHRDWGKR---------------------------FMRLYSQYTSWDNTKDPERP 487
K+F +R R Y+ + S ++ P
Sbjct: 515 SKMFAEVESIIRRQINMSVLPSVQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPP 574
Query: 488 -----------------LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD 530
L IGYVS D+ H +S+ + + H+ +N +V Y+ + A+
Sbjct: 575 FTHPAGLPVKREGGFKRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYA--LSAN 632
Query: 531 AKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPA 590
T +R+++ + + D+ + +A ++ +DKI IL+ L G+T + + A QPA
Sbjct: 633 DNT-EWRQRIQSEAEHFLDVSAMSSDAIAKIINQDKIQILINLNGYTKGARNEIFAMQPA 691
Query: 591 PVQVTWIGYPNTTGLPTIDYRITDSLADP 619
P+QV+++G+P TTG IDY +TD P
Sbjct: 692 PIQVSYMGFPGTTGATYIDYLVTDEFVSP 720
|
O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|O18158|OGT1_CAEEL UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase OS=Caenorhabditis elegans GN=ogt-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 210 bits (535), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 166/609 (27%), Positives = 275/609 (45%), Gaps = 62/609 (10%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + + DAL Y++ ++ ++A+I L A ++ A++++P
Sbjct: 201 NYYKEKGQLQDALENYKLAVKLKPEFIDAYINLAAALVSGGDLEQAVTAYFNALQINPDL 260
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P + A+ ++LG G
Sbjct: 261 YCVRSDLGNLLKAMGRLEEAKVCYLKAIETQPQF-------AVAWSNLGCVFNSQGEIWL 313
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A +A + N+ +Y
Sbjct: 314 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVSAYLRALNLSGNHAVVHGNLACVY 373
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y++ + + P+F A N+A AL + G+ V+ E Y KAL
Sbjct: 374 YEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANALKEKGSVVEAE-------QMYMKALEL 426
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD+ NL E K + A Y A P A A +NL I + + L+ A+
Sbjct: 427 CPTHADSQNNLANIKREQGKIEDATRLYLKALEIYPEFAAAHSNLASILQQQGKLNDAIL 486
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
Y+ A+ I P F+ + +N+G G AA +AI NP +A+A++NL +++DA
Sbjct: 487 HYKEAIRIAPTFADAYSNMGNTLKEMGDSSAAIACYNRAIQINPAFADAHSNLASIHKDA 546
Query: 416 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-----DKLFEAHRDW--GKRF 468
G+++ AI +Y LK+ PD +A N I + +D KL + D KR
Sbjct: 547 GNMAEAIQSYSTALKLKPDFPDAYCNLAHCHQIICDWNDYDKRVRKLVQIVEDQLCKKRL 606
Query: 469 MRLYSQYTSWDNTKDPER-----------------------PLV--------------IG 491
++ ++ R PL+ IG
Sbjct: 607 PSVHPHHSMLYPLSHAARIAIAAKHASLCFDKVHVQMLGKTPLIHADRFSVQNGQRLRIG 666
Query: 492 YVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIY 551
YVS D+ H S+ +++ HD +V Y+ V FR K+M + + D+
Sbjct: 667 YVSSDFGNHPTSHLMQSIPGMHDRSRVEVFCYALSVN---DGTNFRSKLMNESEHFVDLS 723
Query: 552 GID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDY 610
I K A + +D I IL+ + G+T + + A +PAP+QV W+GYP+T+G +DY
Sbjct: 724 QIPCNGKAAEKIAQDGIHILINMNGYTKGARNEIFALRPAPIQVMWLGYPSTSGATFMDY 783
Query: 611 RITDSLADP 619
ITD++ P
Sbjct: 784 IITDAVTSP 792
|
Addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 160/612 (26%), Positives = 275/612 (44%), Gaps = 59/612 (9%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 97 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 156
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 157 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 209
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +Y
Sbjct: 210 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 269
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y R + + P+F A N+A AL K +G + + Y AL
Sbjct: 270 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-------KEKGSVAEAEDCYNTALRL 322
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD++ NL E + A+ Y A P A A +NL + + + L +A+
Sbjct: 323 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 382
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
Y+ A+ I P F+ + +N+G + A + +AI NP +A+A++NL +++D+
Sbjct: 383 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 442
Query: 416 GSISLAIDAYEQCLKIDPDSRNA--------------------------------GQNRL 443
G+I AI +Y LK+ PD +A +NRL
Sbjct: 443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502
Query: 444 LAMN-------YINEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYVS 494
+++ ++ G + E H + + + + Y + K + L +GYVS
Sbjct: 503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 562
Query: 495 PDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID 554
D+ H S+ +++ H+ ++V Y+ + D T FR KVM + + D+ I
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKVMAEANHFIDLSQIP 619
Query: 555 -EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRIT 613
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY IT
Sbjct: 620 CNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIIT 679
Query: 614 DSLADPPETKQK 625
D P E ++
Sbjct: 680 DQETSPAEVAEQ 691
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 160/612 (26%), Positives = 275/612 (44%), Gaps = 59/612 (9%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 87 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 146
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 147 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 199
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +Y
Sbjct: 200 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 259
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y R + + P+F A N+A AL K +G + + Y AL
Sbjct: 260 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-------KEKGSVAEAEDCYNTALRL 312
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD++ NL E + A+ Y A P A A +NL + + + L +A+
Sbjct: 313 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 372
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
Y+ A+ I P F+ + +N+G + A + +AI NP +A+A++NL +++D+
Sbjct: 373 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 432
Query: 416 GSISLAIDAYEQCLKIDPDSRNA--------------------------------GQNRL 443
G+I AI +Y LK+ PD +A +NRL
Sbjct: 433 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRL 492
Query: 444 LAMN-------YINEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYVS 494
+++ ++ G + E H + + + + Y + K + L +GYVS
Sbjct: 493 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 552
Query: 495 PDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID 554
D+ H S+ +++ H+ ++V Y+ + D T FR KVM + + D+ I
Sbjct: 553 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKVMAEANHFIDLSQIP 609
Query: 555 -EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRIT 613
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY IT
Sbjct: 610 CNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIIT 669
Query: 614 DSLADPPETKQK 625
D P E ++
Sbjct: 670 DQETSPAEVAEQ 681
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 625 | ||||||
| 255579381 | 930 | o-linked n-acetylglucosamine transferase | 1.0 | 0.672 | 0.900 | 0.0 | |
| 75318818 | 932 | RecName: Full=Probable UDP-N-acetylgluco | 1.0 | 0.670 | 0.883 | 0.0 | |
| 224140075 | 917 | predicted protein [Populus trichocarpa] | 1.0 | 0.681 | 0.887 | 0.0 | |
| 224088480 | 934 | predicted protein [Populus trichocarpa] | 1.0 | 0.669 | 0.881 | 0.0 | |
| 225440809 | 914 | PREDICTED: probable UDP-N-acetylglucosam | 0.996 | 0.681 | 0.889 | 0.0 | |
| 256772634 | 916 | putative SPINDLY protein [Rosa lucieae] | 0.998 | 0.681 | 0.878 | 0.0 | |
| 356500631 | 928 | PREDICTED: probable UDP-N-acetylglucosam | 0.995 | 0.670 | 0.875 | 0.0 | |
| 195423963 | 934 | SPINDLY [Sinningia speciosa] | 0.998 | 0.668 | 0.873 | 0.0 | |
| 449526080 | 925 | PREDICTED: probable UDP-N-acetylglucosam | 1.0 | 0.675 | 0.864 | 0.0 | |
| 356534448 | 929 | PREDICTED: probable UDP-N-acetylglucosam | 0.995 | 0.669 | 0.858 | 0.0 |
| >gi|255579381|ref|XP_002530535.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223529939|gb|EEF31867.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1181 bits (3056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/626 (90%), Positives = 593/626 (94%), Gaps = 1/626 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQS-LPGTSGSPVAVGSTLKGFEGKDALSYANILR 59
MAW EK+ NG+E P++DNGFLKG Q P SGSPVAV + LKG E KD+LSYANILR
Sbjct: 1 MAWTEKNNGNGKEGGPIEDNGFLKGTQEPSPSASGSPVAVAAGLKGIEEKDSLSYANILR 60
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
SRNKFVDALA+YE VLEKDSGNVEA+IGKGICLQMQNMGRLAFDSF+EA+KLDPQNACA
Sbjct: 61 SRNKFVDALAIYESVLEKDSGNVEAYIGKGICLQMQNMGRLAFDSFAEAIKLDPQNACAL 120
Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179
THCGILYK+EGRLVEAAESY KAL ADP YKPAAECL+IVLTDLGTSLKL+GNTQ+GIQK
Sbjct: 121 THCGILYKEEGRLVEAAESYQKALRADPLYKPAAECLSIVLTDLGTSLKLSGNTQEGIQK 180
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
YYEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAALERPMYAEAYCNMGVIYKNRG
Sbjct: 181 YYEALKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAALERPMYAEAYCNMGVIYKNRG 240
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299
DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG+AYYKKALYYNWHY
Sbjct: 241 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGIAYYKKALYYNWHY 300
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
ADAMYNLGVAYGEMLKFD AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ
Sbjct: 301 ADAMYNLGVAYGEMLKFDNAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQT 360
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
ALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+I
Sbjct: 361 ALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDAGNIP 420
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
+AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEGHD+KLFEAHRDWG+RFMRLY QYT WD
Sbjct: 421 MAINAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDEKLFEAHRDWGRRFMRLYPQYTMWD 480
Query: 480 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK 539
N KD +RPLVIGYVSPDYFTHSVSYFIEAPLVYHDY NYKVVVYSAVVKADAKTIRFREK
Sbjct: 481 NPKDLDRPLVIGYVSPDYFTHSVSYFIEAPLVYHDYANYKVVVYSAVVKADAKTIRFREK 540
Query: 540 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 599
V+K+GGIWRDIYGIDEKKVA+MVRED +DILVELTGHTANNKLGMMAC+PAP+QVTWIGY
Sbjct: 541 VLKQGGIWRDIYGIDEKKVASMVREDNVDILVELTGHTANNKLGMMACRPAPIQVTWIGY 600
Query: 600 PNTTGLPTIDYRITDSLADPPETKQK 625
PNTTGLPTIDYRITDSLADP +TKQK
Sbjct: 601 PNTTGLPTIDYRITDSLADPRDTKQK 626
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75318818|sp|O82039.1|SPY_PETHY RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY gi|3319682|emb|CAA76834.1| SPINDLY protein [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 1175 bits (3039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/625 (88%), Positives = 590/625 (94%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EKDV NG+E D + +NGFLKG QS + GSPV + K FEGKDA++YANILRS
Sbjct: 1 MAWTEKDVENGKESDSLGNNGFLKGVQSSSDSKGSPVRISPVKKSFEGKDAITYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VL+KDSG++E+ IGKGICLQMQNMGRLAF+SF+EA+KLDPQNACA T
Sbjct: 61 RNKFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRLVEAAESY KAL ADPSYKPAAECLAIVLTD+GTSLKLAGN+Q+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA
Sbjct: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
L+IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 361 LTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISL 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL+EAHRDWG RFMRLY QY SWDN
Sbjct: 421 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGSDDKLYEAHRDWGWRFMRLYQQYNSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
+KDPER LVIGYVSPDYFTHSVSYFIEAPL YHDY NYKVV+YSAVVKADAKT RFR+KV
Sbjct: 481 SKDPERQLVIGYVSPDYFTHSVSYFIEAPLAYHDYANYKVVIYSAVVKADAKTNRFRDKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+KKGG+WRDIYGIDEKKV++M+REDK+DI++ELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 541 LKKGGVWRDIYGIDEKKVSSMIREDKVDIMIELTGHTANNKLGMMACRPAPVQVTWIGYP 600
Query: 601 NTTGLPTIDYRITDSLADPPETKQK 625
NTTGLPTIDYRITDS+ADPP TKQK
Sbjct: 601 NTTGLPTIDYRITDSMADPPSTKQK 625
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140075|ref|XP_002323412.1| predicted protein [Populus trichocarpa] gi|222868042|gb|EEF05173.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1168 bits (3021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/629 (88%), Positives = 588/629 (93%), Gaps = 4/629 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW E D + RE++ ++DNGFLKG Q GTSGSPV KGFEGKDALSYANILRS
Sbjct: 1 MAWTENDAGSVREKELIEDNGFLKGSQPSTGTSGSPVVSSPVQKGFEGKDALSYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE VLEKDSG VEA+IGKGICLQMQNMGRLAFDSF+EA+KLDPQNACA T
Sbjct: 61 RNKFADALALYESVLEKDSGIVEAYIGKGICLQMQNMGRLAFDSFAEAIKLDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRL+EAAESYHKAL AD SYKPA+ECLAIVLTDLGTSLKL+GNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLLEAAESYHKALKADLSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALK+DPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEALKVDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAAMERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTD GTKVKLEGDI+QGVAYYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDFGTKVKLEGDISQGVAYYKKALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ-- 358
DAMYNLGVAYGEMLKF+MAIVFYELAF+FNPHCAEACNNLGVIYKDRDNLDKAVECYQ
Sbjct: 301 DAMYNLGVAYGEMLKFEMAIVFYELAFNFNPHCAEACNNLGVIYKDRDNLDKAVECYQAN 360
Query: 359 --MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
+LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG
Sbjct: 361 SDTSLSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDAG 420
Query: 417 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYT 476
+IS+AI AYEQCL+IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG+RFMRLY QYT
Sbjct: 421 NISMAISAYEQCLEIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGRRFMRLYPQYT 480
Query: 477 SWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRF 536
SWDN K P+RPLVIGYVSPDYFTHSVSYFIEAPLVYH Y NYKVVVYSAVVK DAKT RF
Sbjct: 481 SWDNPKVPDRPLVIGYVSPDYFTHSVSYFIEAPLVYHVYANYKVVVYSAVVKPDAKTNRF 540
Query: 537 REKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTW 596
+EKV+K+GGIWRDIYGIDEKKVA MVREDK+DILVELTGHTANNKLGMMAC+PAPVQVTW
Sbjct: 541 KEKVLKRGGIWRDIYGIDEKKVAIMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTW 600
Query: 597 IGYPNTTGLPTIDYRITDSLADPPETKQK 625
IGYPNTTGLPTIDYRITDS ADPP+TKQK
Sbjct: 601 IGYPNTTGLPTIDYRITDSFADPPDTKQK 629
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088480|ref|XP_002308458.1| predicted protein [Populus trichocarpa] gi|222854434|gb|EEE91981.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1167 bits (3019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/625 (88%), Positives = 582/625 (93%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW E D N RE++P DNGFLKG Q P SGS V KGF+GKDALSYANILRS
Sbjct: 1 MAWTENDAGNVREKEPTGDNGFLKGSQPSPDPSGSRVGSSPAQKGFDGKDALSYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE LE DSGNVEA+IGKGICLQMQNM RLAFDSF+EA+KLDP+NACA T
Sbjct: 61 RNKFADALALYESALENDSGNVEAYIGKGICLQMQNMERLAFDSFAEAIKLDPENACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRL+EAAESYHKAL ADPSYKPA+ECLAIVLTDLGTSLKL+GNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLLEAAESYHKALKADPSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
Y+ALK+DPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YDALKVDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAAIERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV YYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVTYYKKALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKF+MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ
Sbjct: 301 DAMYNLGVAYGEMLKFEMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQAT 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRD G+I++
Sbjct: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDVGNITM 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI AYEQCL+IDPDSRNAGQNRLLAMNYINEGHDDKLF+AHR+WG+RFMRLY Q+TSWDN
Sbjct: 421 AISAYEQCLEIDPDSRNAGQNRLLAMNYINEGHDDKLFQAHREWGRRFMRLYPQFTSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
K PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY NY VVVYSAVVK+DAKT RFREKV
Sbjct: 481 PKVPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYANYMVVVYSAVVKSDAKTNRFREKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+KKGG+WRDIYGIDEKKVA+M+REDK+DILVELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 541 LKKGGMWRDIYGIDEKKVASMIREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYP 600
Query: 601 NTTGLPTIDYRITDSLADPPETKQK 625
NTTGLPTIDYRITDS DPP TKQK
Sbjct: 601 NTTGLPTIDYRITDSFTDPPHTKQK 625
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440809|ref|XP_002281883.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Vitis vinifera] gi|297740152|emb|CBI30334.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1155 bits (2988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/625 (88%), Positives = 586/625 (93%), Gaps = 2/625 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EK+V NGR+R+PV NGF K S +S S + G K FEGKDALSYANILRS
Sbjct: 1 MAWTEKEVGNGRDREPVGGNGFSK--VSQTSSSTSSTSPGCLPKKFEGKDALSYANILRS 58
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALA+YE +LEKD+GNVEAHIGKGICLQMQNMGRLAF+SFSEA++ DPQN CA T
Sbjct: 59 RNKFADALAMYENILEKDNGNVEAHIGKGICLQMQNMGRLAFESFSEAIRQDPQNLCALT 118
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
H GILYKDEGRL+EAAESY KAL D SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 119 HLGILYKDEGRLLEAAESYDKALRIDSSYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKY 178
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAALERPMYAEAYCNMGVI+KNRGD
Sbjct: 179 YEALKIDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAALERPMYAEAYCNMGVIFKNRGD 238
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA
Sbjct: 239 LESAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 298
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+A
Sbjct: 299 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLA 358
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+IS+
Sbjct: 359 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNISM 418
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG+DDKLFEAHRDWG+RFMRLY QYTSWDN
Sbjct: 419 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGNDDKLFEAHRDWGRRFMRLYPQYTSWDN 478
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
KDPERPLV+GYVSPDYFTHSVSYFIEAPLV HDY NYKVVVYSAVVKADAKTIRFR+KV
Sbjct: 479 PKDPERPLVVGYVSPDYFTHSVSYFIEAPLVNHDYANYKVVVYSAVVKADAKTIRFRDKV 538
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+K+GG+WRDIYGIDEKKVA+MVREDK+DILVELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 539 LKRGGVWRDIYGIDEKKVASMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYP 598
Query: 601 NTTGLPTIDYRITDSLADPPETKQK 625
NTTGLPTIDYRITDSLAD P+T QK
Sbjct: 599 NTTGLPTIDYRITDSLADLPDTSQK 623
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|256772634|emb|CAX46402.1| putative SPINDLY protein [Rosa lucieae] | Back alignment and taxonomy information |
|---|
Score = 1151 bits (2978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/628 (87%), Positives = 587/628 (93%), Gaps = 4/628 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKG---FEGKDALSYANI 57
MAW +KD NG+E DPV +NGFL Q P TSGS +A G+T +G FE K+ +SYANI
Sbjct: 1 MAWTDKDGCNGKEGDPVVENGFLNCSQPSPSTSGSLLA-GATPEGGKSFEVKETISYANI 59
Query: 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC 117
LRSRNKF DAL+LYE VL+KD+ NVEAHIGKGICLQM+NMGRLAFDSF+EA+KLD +NAC
Sbjct: 60 LRSRNKFSDALSLYETVLDKDARNVEAHIGKGICLQMKNMGRLAFDSFTEAIKLDSENAC 119
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
A THCGILYKDEGRL EAAESY KAL+ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDG+
Sbjct: 120 ALTHCGILYKDEGRLREAAESYQKALNADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGL 179
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
QKYYEALK DPHYAPAYYNLGVVYSE+MQ+DTAL CYEKAALERPMY EAYCNMGVIYKN
Sbjct: 180 QKYYEALKTDPHYAPAYYNLGVVYSEMMQFDTALTCYEKAALERPMYTEAYCNMGVIYKN 239
Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI+QG+AYYKKALYYNW
Sbjct: 240 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIDQGIAYYKKALYYNW 299
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY
Sbjct: 300 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 359
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417
QMALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+
Sbjct: 360 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGN 419
Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 477
IS+AIDAYEQCLKIDPDSRNAGQNRLLAMNYI+EG DDKLF AHRDWG+RFMRL SQ+TS
Sbjct: 420 ISMAIDAYEQCLKIDPDSRNAGQNRLLAMNYIHEGQDDKLFVAHRDWGRRFMRLSSQHTS 479
Query: 478 WDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFR 537
WDN KDPERPLVIGYVSPDYFTHSVSYFIEAPL +H+Y YKVVVYSAVVKADAKTIRFR
Sbjct: 480 WDNLKDPERPLVIGYVSPDYFTHSVSYFIEAPLAHHEYAKYKVVVYSAVVKADAKTIRFR 539
Query: 538 EKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWI 597
+KV+KKGGIWRDIYGIDEKKVA++VREDKIDILVELTGHTANNKLG MAC+PAPVQVTWI
Sbjct: 540 DKVLKKGGIWRDIYGIDEKKVASIVREDKIDILVELTGHTANNKLGTMACRPAPVQVTWI 599
Query: 598 GYPNTTGLPTIDYRITDSLADPPETKQK 625
GYPNTTGLP IDYRITDSLAD P++KQK
Sbjct: 600 GYPNTTGLPAIDYRITDSLADSPDSKQK 627
|
Source: Rosa lucieae Species: Rosa lucieae Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500631|ref|XP_003519135.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] gi|401721241|gb|AFP99901.1| putative UDP-N-acetylglucosamin [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1134 bits (2934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/626 (87%), Positives = 581/626 (92%), Gaps = 4/626 (0%)
Query: 1 MAWVE-KDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILR 59
MAW E D +NGRE+ V +NGFLK S P + GS GS K EGKD +SYANILR
Sbjct: 1 MAWTEDSDGNNGREK-LVGENGFLK--VSEPSSDGSVGDGGSVSKRCEGKDDVSYANILR 57
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
SRNKFVDALALYE VLE D GNVEA IGKGICLQMQNMGRLAF+SF+EA++LDPQNACA
Sbjct: 58 SRNKFVDALALYERVLESDGGNVEALIGKGICLQMQNMGRLAFESFAEAIRLDPQNACAL 117
Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179
THCGILYKDEGRLVEAAESY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQ+GIQK
Sbjct: 118 THCGILYKDEGRLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQK 177
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
Y+EALKIDPHYAPAYYNLGVVYSE+MQYD AL YEKAA ERPMYAEAYCNMGVIYKNRG
Sbjct: 178 YFEALKIDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNRG 237
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299
DLE+AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI+ GVA+YKKALYYNWHY
Sbjct: 238 DLEAAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIDHGVAFYKKALYYNWHY 297
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+
Sbjct: 298 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQL 357
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
AL IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG I+
Sbjct: 358 ALGIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIA 417
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
LAI+AYEQCLKIDPDSRNAGQNRLLAMNYI+EG+DDKLFEAHRDWG+RFMRLYSQ+TSWD
Sbjct: 418 LAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYSQFTSWD 477
Query: 480 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK 539
N+KDPERPLVIGYVSPDYFTHSVSYFIEAPL+YHDY NYKVVVYSAVVKADAKTIRFREK
Sbjct: 478 NSKDPERPLVIGYVSPDYFTHSVSYFIEAPLLYHDYTNYKVVVYSAVVKADAKTIRFREK 537
Query: 540 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 599
V+KKGGIW+DIYG DEKKVA MVRED++DIL+ELTGHTANNKLGMMAC+PAPVQVTWIGY
Sbjct: 538 VLKKGGIWKDIYGTDEKKVADMVREDQVDILIELTGHTANNKLGMMACRPAPVQVTWIGY 597
Query: 600 PNTTGLPTIDYRITDSLADPPETKQK 625
PNTTGLPTIDYRITDS ADPPETKQK
Sbjct: 598 PNTTGLPTIDYRITDSQADPPETKQK 623
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|195423963|gb|ACF96937.1| SPINDLY [Sinningia speciosa] | Back alignment and taxonomy information |
|---|
Score = 1133 bits (2931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/625 (87%), Positives = 576/625 (92%), Gaps = 1/625 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MA K+V + + RD + D LK Q P SP+ G K EGKDALSYANILRS
Sbjct: 1 MASPGKNVGSVKGRDSLDDQASLKEGQPSPDIR-SPLGSGPIKKSLEGKDALSYANILRS 59
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VLEKD +VEAHIGKGICLQMQN+GRLA +SF+EAV+LDPQNACA T
Sbjct: 60 RNKFVDALAVYETVLEKDGESVEAHIGKGICLQMQNLGRLACESFAEAVRLDPQNACALT 119
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRL EAAE Y KAL ADPSYK AAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 120 HCGILYKDEGRLAEAAEMYQKALKADPSYKLAAECLAIVLTDLGTSLKLAGNTQEGIQKY 179
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 180 YEAIKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAAIERPMYAEAYCNMGVIYKNRGD 239
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN GVAYYKKALYYNWHYA
Sbjct: 240 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINHGVAYYKKALYYNWHYA 299
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA
Sbjct: 300 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 359
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 360 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNISL 419
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINE +DDKL+EAHRDWG+RFMRL+ QYTSWDN
Sbjct: 420 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINETNDDKLYEAHRDWGRRFMRLFPQYTSWDN 479
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
KDPERPLVIGYVSPDYFTHSVSYFIEAPL+YHD+ NYKVVVYSAVVKADAKT RFR+KV
Sbjct: 480 IKDPERPLVIGYVSPDYFTHSVSYFIEAPLIYHDHVNYKVVVYSAVVKADAKTNRFRDKV 539
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+K GG WRD+YGIDEKKVA+MVREDKIDILVELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 540 LKHGGTWRDVYGIDEKKVASMVREDKIDILVELTGHTANNKLGMMACRPAPVQVTWIGYP 599
Query: 601 NTTGLPTIDYRITDSLADPPETKQK 625
NTTGLP IDYRITD+LAD P+TKQK
Sbjct: 600 NTTGLPAIDYRITDALADSPDTKQK 624
|
Source: Sinningia speciosa Species: Sinningia speciosa Genus: Sinningia Family: Gesneriaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449526080|ref|XP_004170042.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1128 bits (2917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/625 (86%), Positives = 583/625 (93%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
M EKD S+G+E PV++NGFL+G QS +S S V++ S K EGKD L +ANILRS
Sbjct: 1 MERTEKDDSSGKEIVPVRENGFLQGSQSSSQSSSSLVSIDSAEKKVEGKDGLFFANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DAL LYE VLEKD N+EAHIGKGICLQMQNM + AF+SF+EA++LDPQNACA T
Sbjct: 61 RNKFSDALVLYEKVLEKDGDNLEAHIGKGICLQMQNMIKPAFESFAEAIRLDPQNACAFT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYK+EGRLVEAAESY KAL DPSY+PAAECLA+VLTDLGTSLKL+GN+QDGIQKY
Sbjct: 121 HCGILYKEEGRLVEAAESYQKALRVDPSYRPAAECLAVVLTDLGTSLKLSGNSQDGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEALKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAAFERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK+ALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKRALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFD AIVFYELAFHFNPHCAEACNNLGVIYKD+DNLDKAVECYQ+A
Sbjct: 301 DAMYNLGVAYGEMLKFDTAIVFYELAFHFNPHCAEACNNLGVIYKDQDNLDKAVECYQLA 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVL+RDAG+I +
Sbjct: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAYNNLGVLHRDAGNIEM 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
A+DAYE+CLKIDPDSRNAGQNRLLAMNY +EGH+DKL+EAHRDWG+RFMRLY QYTSWDN
Sbjct: 421 AVDAYERCLKIDPDSRNAGQNRLLAMNYTDEGHEDKLYEAHRDWGRRFMRLYPQYTSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
KDPERPLVIGYVSPDYFTHSVSYF+EAPLV+HDY NYKVVVYSAVVKADAKTIRFR+KV
Sbjct: 481 PKDPERPLVIGYVSPDYFTHSVSYFVEAPLVHHDYANYKVVVYSAVVKADAKTIRFRDKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+K+GG+WRDIYGIDEKKVA+MVREDK+DILVELTGHTANNKLGMMAC+PAPVQVTWIGYP
Sbjct: 541 LKQGGVWRDIYGIDEKKVASMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYP 600
Query: 601 NTTGLPTIDYRITDSLADPPETKQK 625
NTTGLPTIDYRITD+L DPP TKQK
Sbjct: 601 NTTGLPTIDYRITDALTDPPNTKQK 625
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534448|ref|XP_003535766.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1123 bits (2905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/627 (85%), Positives = 580/627 (92%), Gaps = 5/627 (0%)
Query: 1 MAWVE-KDVSNGRERDPVQDNGFLKGPQSLP-GTSGSPVAVGSTLKGFEGKDALSYANIL 58
MAW E D +NGRE+ V +NGFL + P G+ G V+V + +EGKD + +ANIL
Sbjct: 1 MAWTEDNDENNGREKKMVGENGFLIVSEPSPAGSGGDGVSVSTR---YEGKDDVLFANIL 57
Query: 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118
RSRNKFVDALALYE VLE D GNVEA +GKGICLQMQNMGRLAF+SF+EA+++DPQNACA
Sbjct: 58 RSRNKFVDALALYERVLESDGGNVEALVGKGICLQMQNMGRLAFESFAEAIRMDPQNACA 117
Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178
THCGILYKDEG LVEAAESY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQ+GIQ
Sbjct: 118 LTHCGILYKDEGCLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQ 177
Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238
KY+EALKIDPHYAPAYYNLGVVYSE+MQYD AL YEKAA ERPMYAEAYCNMGVIYKNR
Sbjct: 178 KYFEALKIDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNR 237
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
GDLE+AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN+GVA+YKKAL+YNWH
Sbjct: 238 GDLEAAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINRGVAFYKKALHYNWH 297
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ
Sbjct: 298 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 357
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418
+AL IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG I
Sbjct: 358 LALGIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDI 417
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 478
SLAI+AYEQCLKIDPDSRNAGQNRLLAMNYI+EG+DDKLFEAHRDWG+RFMRLY Q+TSW
Sbjct: 418 SLAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYPQFTSW 477
Query: 479 DNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE 538
DN+KDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY NYKV+VYSAVVKADAKTIRFRE
Sbjct: 478 DNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYTNYKVIVYSAVVKADAKTIRFRE 537
Query: 539 KVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIG 598
KV+KKGGIW+DIYG DEKKVA MVR+D++DIL+ELTGHTANNKLGM+AC+PAPVQVTWIG
Sbjct: 538 KVLKKGGIWKDIYGTDEKKVADMVRQDQVDILIELTGHTANNKLGMLACRPAPVQVTWIG 597
Query: 599 YPNTTGLPTIDYRITDSLADPPETKQK 625
YPNTTGLPTIDYRITDS ADPPETKQK
Sbjct: 598 YPNTTGLPTIDYRITDSRADPPETKQK 624
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 625 | ||||||
| TAIR|locus:2080722 | 914 | SPY "SPINDLY" [Arabidopsis tha | 0.992 | 0.678 | 0.806 | 6.5e-280 | |
| TAIR|locus:2103025 | 977 | SEC "secret agent" [Arabidopsi | 0.620 | 0.397 | 0.297 | 1e-51 | |
| UNIPROTKB|Q749Z1 | 585 | GSU2601 "TPR domain/SEC-C moti | 0.508 | 0.543 | 0.348 | 2.3e-48 | |
| TIGR_CMR|GSU_2601 | 585 | GSU_2601 "TPR domain/SEC-C mot | 0.508 | 0.543 | 0.348 | 2.3e-48 | |
| WB|WBGene00003858 | 1151 | ogt-1 [Caenorhabditis elegans | 0.628 | 0.341 | 0.271 | 3.7e-48 | |
| UNIPROTKB|O18158 | 1151 | ogt-1 "UDP-N-acetylglucosamine | 0.628 | 0.341 | 0.271 | 3.7e-48 | |
| FB|FBgn0261403 | 1059 | sxc "super sex combs" [Drosoph | 0.590 | 0.348 | 0.268 | 1.3e-44 | |
| RGD|62060 | 1036 | Ogt "O-linked N-acetylglucosam | 0.811 | 0.489 | 0.261 | 6.6e-44 | |
| MGI|MGI:1339639 | 1046 | Ogt "O-linked N-acetylglucosam | 0.811 | 0.484 | 0.261 | 6.7e-44 | |
| ZFIN|ZDB-GENE-030131-9631 | 1062 | ogt.1 "O-linked N-acetylglucos | 0.812 | 0.478 | 0.258 | 7e-44 |
| TAIR|locus:2080722 SPY "SPINDLY" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2690 (952.0 bits), Expect = 6.5e-280, P = 6.5e-280
Identities = 504/625 (80%), Positives = 542/625 (86%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
M +E D RER PV +NGF G +S ++G + + K +G D LSYANILR+
Sbjct: 1 MVGLEDDTE--RERSPVVENGFSNGSRSSSSSAG---VLSPSRKVTQGNDTLSYANILRA 55
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE +LEKDS NVEAHIGKGICLQ QN G LAFD FSEA++LDP NACA T
Sbjct: 56 RNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALT 115
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGIL+K+EGRLVEAAESY KAL AD SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 116 HCGILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKY 175
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVIYKNRGD
Sbjct: 176 YEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGD 235
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LE AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD+ QGVAYYKKALYYNWHYA
Sbjct: 236 LEMAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVAYYKKALYYNWHYA 295
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV+YKDRDNLDKAVECYQMA
Sbjct: 296 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVLYKDRDNLDKAVECYQMA 355
Query: 361 LSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNF+QSLNNLGVVYTVQG NPTYAEA+NNLGVLYRDAG+I++
Sbjct: 356 LSIKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITM 415
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AIDAYE+CLKIDPDSRNAGQNRLLAMNYINEG DDKLFEAHRDWG RF RL+ QYTSWDN
Sbjct: 416 AIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLFEAHRDWGWRFTRLHPQYTSWDN 475
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKV 540
KDPERP+ IGY+SPD+FTHSVSYFIEAPL +HDY Y T RFR+KV
Sbjct: 476 LKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTYRFRDKV 535
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
+KKGG+W+DIYGIDEKK+A+MVREDKIDILVELTGHTANNKLG MAC+PAPVQVTWIGYP
Sbjct: 536 LKKGGVWKDIYGIDEKKIASMVREDKIDILVELTGHTANNKLGTMACRPAPVQVTWIGYP 595
Query: 601 NTTGLPTIDYRITDSLADPPETKQK 625
NTTGLPT+DYRITDSLADPP+TKQK
Sbjct: 596 NTTGLPTVDYRITDSLADPPDTKQK 620
|
|
| TAIR|locus:2103025 SEC "secret agent" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 1.0e-51, Sum P(2) = 1.0e-51
Identities = 121/407 (29%), Positives = 182/407 (44%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLD 112
AN + + A+ Y I +E +A + GRL A +A+ L+
Sbjct: 128 ANAWKEKGDTDRAIRYYLIAIELRPNFADAW--SNLASAYMRKGRLSEATQCCQQALSLN 185
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P AH++ G L K +G + EA Y +A+ P++ AI ++L +G+
Sbjct: 186 PLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTF-------AIAWSNLAGLFMESGD 238
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+Q Y EA+K+ P + AY NLG VY L + A+ CY+ A RP A A+ N+
Sbjct: 239 LNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGNIA 298
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
IY +G L+ AI Y++ L+ P F A NN+ AL D+G +++ V Y +
Sbjct: 299 SIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGR-------VDEAVRCYNQC 351
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
L ++ AM NLG Y E A ++ + NNL +IYK + N
Sbjct: 352 LALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSD 411
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLY 412
A+ CY L I P + +L N G Y G PT AEA+ NL Y
Sbjct: 412 AISCYNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASAY 471
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-DKLF 458
+D+G + AI +Y+Q L + PD A N L + + D K+F
Sbjct: 472 KDSGHVEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMF 518
|
|
| UNIPROTKB|Q749Z1 GSU2601 "TPR domain/SEC-C motif domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 112/321 (34%), Positives = 167/321 (52%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+ ++ G A+ DMA+ Y A P A+A NLGV+++ + LD+A ++
Sbjct: 35 AEMLWRAGNAHLAGGALDMALSCYREAVRLRPGFAQAHYNLGVVFQQKGLLDEAAASFRS 94
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 419
A+S +++++ NNLG + QG P +A AY+NLG R G +
Sbjct: 95 AISFNRDYAKAYNNLGYILATQGRLDESADCFNRAIAIEPGFAAAYHNLGTTLRHQGRLD 154
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
+ A+ I+P + L+ ++Y ++ D+ LF H WG++ + +
Sbjct: 155 ETLAAFRTAHAINPHDPVFHSDLLMMLHY-SDMDDETLFREHVRWGEQHAPAAASVPTHQ 213
Query: 480 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREK 539
+DP R L IGYVS D+ H V YF+ L HD + + R K
Sbjct: 214 CDRDPGRKLRIGYVSGDFGKHPVGYFLLPFLENHDRSQFEICCYSERGQRQEDDVTARIK 273
Query: 540 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 599
+WR G+ + VA M+R D IDILV+L GHTA+N+L + A +PAPVQVTW+GY
Sbjct: 274 --GHADLWRRTIGLGDAAVAEMIRADGIDILVDLAGHTAHNRLRVFALKPAPVQVTWLGY 331
Query: 600 PNTTGLPTIDYRITDSLADPP 620
PNTTGL +DYRITD++ADPP
Sbjct: 332 PNTTGLRAMDYRITDAVADPP 352
|
|
| TIGR_CMR|GSU_2601 GSU_2601 "TPR domain/SEC-C motif domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 112/321 (34%), Positives = 167/321 (52%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+ ++ G A+ DMA+ Y A P A+A NLGV+++ + LD+A ++
Sbjct: 35 AEMLWRAGNAHLAGGALDMALSCYREAVRLRPGFAQAHYNLGVVFQQKGLLDEAAASFRS 94
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 419
A+S +++++ NNLG + QG P +A AY+NLG R G +
Sbjct: 95 AISFNRDYAKAYNNLGYILATQGRLDESADCFNRAIAIEPGFAAAYHNLGTTLRHQGRLD 154
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
+ A+ I+P + L+ ++Y ++ D+ LF H WG++ + +
Sbjct: 155 ETLAAFRTAHAINPHDPVFHSDLLMMLHY-SDMDDETLFREHVRWGEQHAPAAASVPTHQ 213
Query: 480 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREK 539
+DP R L IGYVS D+ H V YF+ L HD + + R K
Sbjct: 214 CDRDPGRKLRIGYVSGDFGKHPVGYFLLPFLENHDRSQFEICCYSERGQRQEDDVTARIK 273
Query: 540 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 599
+WR G+ + VA M+R D IDILV+L GHTA+N+L + A +PAPVQVTW+GY
Sbjct: 274 --GHADLWRRTIGLGDAAVAEMIRADGIDILVDLAGHTAHNRLRVFALKPAPVQVTWLGY 331
Query: 600 PNTTGLPTIDYRITDSLADPP 620
PNTTGL +DYRITD++ADPP
Sbjct: 332 PNTTGLRAMDYRITDAVADPP 352
|
|
| WB|WBGene00003858 ogt-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 113/416 (27%), Positives = 191/416 (45%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + + DAL Y++ ++ ++A+I L A ++ A++++P
Sbjct: 201 NYYKEKGQLQDALENYKLAVKLKPEFIDAYINLAAALVSGGDLEQAVTAYFNALQINPDL 260
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P + A+ ++LG G
Sbjct: 261 YCVRSDLGNLLKAMGRLEEAKVCYLKAIETQPQF-------AVAWSNLGCVFNSQGEIWL 313
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A +A + N+ +Y
Sbjct: 314 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVSAYLRALNLSGNHAVVHGNLACVY 373
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y++ + + P+F A N+A AL + G+ V+ E Y KAL
Sbjct: 374 YEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANALKEKGSVVEAE-------QMYMKALEL 426
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD+ NL E K + A Y A P A A +NL I + + L+ A+
Sbjct: 427 CPTHADSQNNLANIKREQGKIEDATRLYLKALEIYPEFAAAHSNLASILQQQGKLNDAIL 486
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDA 415
Y+ A+ I P F+ + +N+G G NP +A+A++NL +++DA
Sbjct: 487 HYKEAIRIAPTFADAYSNMGNTLKEMGDSSAAIACYNRAIQINPAFADAHSNLASIHKDA 546
Query: 416 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRL 471
G+++ AI +Y LK+ PD +A Y N H ++ D+ KR +L
Sbjct: 547 GNMAEAIQSYSTALKLKPDFPDA---------YCNLAHCHQIICDWNDYDKRVRKL 593
|
|
| UNIPROTKB|O18158 ogt-1 "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 113/416 (27%), Positives = 191/416 (45%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + + DAL Y++ ++ ++A+I L A ++ A++++P
Sbjct: 201 NYYKEKGQLQDALENYKLAVKLKPEFIDAYINLAAALVSGGDLEQAVTAYFNALQINPDL 260
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P + A+ ++LG G
Sbjct: 261 YCVRSDLGNLLKAMGRLEEAKVCYLKAIETQPQF-------AVAWSNLGCVFNSQGEIWL 313
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A +A + N+ +Y
Sbjct: 314 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVSAYLRALNLSGNHAVVHGNLACVY 373
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y++ + + P+F A N+A AL + G+ V+ E Y KAL
Sbjct: 374 YEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANALKEKGSVVEAE-------QMYMKALEL 426
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD+ NL E K + A Y A P A A +NL I + + L+ A+
Sbjct: 427 CPTHADSQNNLANIKREQGKIEDATRLYLKALEIYPEFAAAHSNLASILQQQGKLNDAIL 486
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDA 415
Y+ A+ I P F+ + +N+G G NP +A+A++NL +++DA
Sbjct: 487 HYKEAIRIAPTFADAYSNMGNTLKEMGDSSAAIACYNRAIQINPAFADAHSNLASIHKDA 546
Query: 416 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRL 471
G+++ AI +Y LK+ PD +A Y N H ++ D+ KR +L
Sbjct: 547 GNMAEAIQSYSTALKLKPDFPDA---------YCNLAHCHQIICDWNDYDKRVRKL 593
|
|
| FB|FBgn0261403 sxc "super sex combs" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 103/383 (26%), Positives = 173/383 (45%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +AL Y + ++ +I L A ++ A++ +P
Sbjct: 126 NVFKERGQLQEALDNYRRAVRLKPDFIDGYINLAAALVAARDMESAVQAYITALQYNPDL 185
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P + A+ ++LG G
Sbjct: 186 YCVRSDLGNLLKALGRLEEAKACYLKAIETCPGF-------AVAWSNLGCVFNAQGEIWL 238
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P A + N+ +Y
Sbjct: 239 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVY 298
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y R + + PNF A N+A AL K +G + + Y AL
Sbjct: 299 YEQGLIDLAIDTYRRAIELQPNFPDAYCNLANAL-------KEKGQVKEAEDCYNTALRL 351
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
++AD++ NL E + A Y A P A A +NL + + + L +A+
Sbjct: 352 CSNHADSLNNLANIKREQGYIEEATRLYLKALEVFPDFAAAHSNLASVLQQQGKLKEALM 411
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDA 415
Y+ A+ I+P F+ + +N+G NP +A+A++NL +++D+
Sbjct: 412 HYKEAIRIQPTFADAYSNMGNTLKELQDVSGALQCYTRAIQINPAFADAHSNLASIHKDS 471
Query: 416 GSISLAIDAYEQCLKIDPDSRNA 438
G+I AI +Y LK+ PD +A
Sbjct: 472 GNIPEAIQSYRTALKLKPDFPDA 494
|
|
| RGD|62060 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 6.6e-44, P = 6.6e-44
Identities = 144/550 (26%), Positives = 251/550 (45%)
Query: 94 MQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
++ +GRL A + +A++ P A A ++ G ++ +G + A + KA++ DP++
Sbjct: 157 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 216
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
A +LG LK A + Y AL + P++A + NL VY E D A+
Sbjct: 217 A-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 269
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
Y +A +P + +AYCN+ K +G + A CY L + P + NN+A
Sbjct: 270 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA----- 324
Query: 272 LGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+K E G+I + V Y+KAL +A A NL + K A++ Y+ A +
Sbjct: 325 ---NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 381
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 390
P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 382 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 441
Query: 391 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRLLAM 446
P + +AY NL A + + D Y++ +K + + +NRL ++
Sbjct: 442 YRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRLPSV 495
Query: 447 N------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD---PERPLVIGYVSPD 496
+ Y ++ G + E H + + + + +++ KD + L +GYVS D
Sbjct: 496 HPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHPKDLKLSDGRLRVGYVSSD 554
Query: 497 YFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGID-E 555
+ H S+ +++ H+ + FR KVM + + D+ I
Sbjct: 555 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQIPCN 611
Query: 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDS 615
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY ITD
Sbjct: 612 GKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQ 671
Query: 616 LADPPETKQK 625
P E ++
Sbjct: 672 ETSPAEVAEQ 681
|
|
| MGI|MGI:1339639 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 6.7e-44, P = 6.7e-44
Identities = 144/550 (26%), Positives = 251/550 (45%)
Query: 94 MQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
++ +GRL A + +A++ P A A ++ G ++ +G + A + KA++ DP++
Sbjct: 167 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 226
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
A +LG LK A + Y AL + P++A + NL VY E D A+
Sbjct: 227 A-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 279
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
Y +A +P + +AYCN+ K +G + A CY L + P + NN+A
Sbjct: 280 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA----- 334
Query: 272 LGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+K E G+I + V Y+KAL +A A NL + K A++ Y+ A +
Sbjct: 335 ---NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 391
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 390
P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 451
Query: 391 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRLLAM 446
P + +AY NL A + + D Y++ +K + + +NRL ++
Sbjct: 452 YRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRLPSV 505
Query: 447 N------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD---PERPLVIGYVSPD 496
+ Y ++ G + E H + + + + +++ KD + L +GYVS D
Sbjct: 506 HPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHPKDLKLSDGRLRVGYVSSD 564
Query: 497 YFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGID-E 555
+ H S+ +++ H+ + FR KVM + + D+ I
Sbjct: 565 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQIPCN 621
Query: 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDS 615
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY ITD
Sbjct: 622 GKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQ 681
Query: 616 LADPPETKQK 625
P E ++
Sbjct: 682 ETSPAEVAEQ 691
|
|
| ZFIN|ZDB-GENE-030131-9631 ogt.1 "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 7.0e-44, P = 7.0e-44
Identities = 142/549 (25%), Positives = 250/549 (45%)
Query: 94 MQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
++ +GRL A + +A++ P A A ++ G ++ +G + A + KA++ DP++
Sbjct: 167 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 226
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
A +LG LK A + Y AL + P++A + NL VY E D A+
Sbjct: 227 A-------YINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 279
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
Y +A +P + +AYCN+ K +G++ A CY L + P + NN+A
Sbjct: 280 DTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLA----- 334
Query: 272 LGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+K E G+I + V Y+KAL +A A NL + K A++ Y+ A +
Sbjct: 335 ---NIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 391
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 390
P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 451
Query: 391 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRLLAM 446
P + +AY NL A + + D Y++ +K + + +NRL ++
Sbjct: 452 YRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSV 505
Query: 447 N------Y-INEGHDDKLFEAHRDWG-KRFMRLYSQ-YTSWDNTKDPERPLVIGYVSPDY 497
+ Y ++ G + E H + + L+ Y + K L +GY+S D+
Sbjct: 506 HPHHSMLYPLSHGFRKAIAERHGNLCLDKINALHKPAYEHPKDLKASSGRLRVGYISSDF 565
Query: 498 FTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGID-EK 556
H S+ +++ H+ + + FR KVM + + D+ I
Sbjct: 566 GNHPTSHLMQSIPGMHNSEKFEVFCYALSPDDGT---NFRVKVMAEAHHFIDLSQIPCNG 622
Query: 557 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSL 616
K A + +D I ILV + G+T + + A +PAP+Q W+ YP T+G P +DY ++D
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLAYPGTSGAPFMDYIVSDKA 682
Query: 617 ADPPETKQK 625
P E ++
Sbjct: 683 TSPIEVAEQ 691
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O82422 | SPY_HORVU | 2, ., 4, ., 1, ., - | 0.8376 | 0.9264 | 0.6133 | N/A | no |
| O82039 | SPY_PETHY | 2, ., 4, ., 1, ., - | 0.8832 | 1.0 | 0.6706 | N/A | no |
| Q8LP10 | SPY_EUSER | 2, ., 4, ., 1, ., - | 0.8363 | 0.9328 | 0.6350 | N/A | no |
| Q96301 | SPY_ARATH | 2, ., 4, ., 1, ., - | 0.8496 | 0.992 | 0.6783 | yes | no |
| Q6YZI0 | SPY_ORYSJ | 2, ., 4, ., 1, ., - | 0.7964 | 0.968 | 0.6526 | yes | no |
| Q8RVB2 | SPY_SOLLC | 2, ., 4, ., 1, ., - | 0.8736 | 1.0 | 0.6713 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 625 | |||
| COG3914 | 620 | COG3914, Spy, Predicted O-linked N-acetylglucosami | 7e-34 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-22 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-21 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-20 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-20 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-19 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 8e-19 | |
| pfam13844 | 468 | pfam13844, Glyco_transf_41, Glycosyl transferase f | 1e-18 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-18 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-17 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-17 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-16 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-15 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 6e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-13 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-13 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-13 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-13 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-11 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-10 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-10 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-10 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 5e-10 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 7e-10 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 7e-10 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 8e-10 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-09 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 6e-09 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 6e-09 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 8e-09 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 2e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 3e-08 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-07 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-07 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-07 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-07 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 6e-07 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 1e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 1e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 1e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-06 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 2e-06 | |
| PRK12370 | 553 | PRK12370, PRK12370, invasion protein regulator; Pr | 2e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 3e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 4e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 7e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 1e-05 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 1e-05 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 1e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-05 | |
| COG4785 | 297 | COG4785, NlpI, Lipoprotein NlpI, contains TPR repe | 2e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 2e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 3e-05 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 3e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 6e-05 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 8e-05 | |
| COG4976 | 287 | COG4976, COG4976, Predicted methyltransferase (con | 9e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-04 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 2e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 2e-04 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 2e-04 | |
| pfam10373 | 276 | pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding dom | 2e-04 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 2e-04 | |
| COG2956 | 389 | COG2956, COG2956, Predicted N-acetylglucosaminyl t | 2e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 2e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 3e-04 | |
| COG2956 | 389 | COG2956, COG2956, Predicted N-acetylglucosaminyl t | 3e-04 | |
| PRK11189 | 296 | PRK11189, PRK11189, lipoprotein NlpI; Provisional | 3e-04 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 3e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 4e-04 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 5e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 6e-04 | |
| COG4785 | 297 | COG4785, NlpI, Lipoprotein NlpI, contains TPR repe | 6e-04 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 6e-04 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 7e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 9e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 0.001 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 0.001 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.002 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.002 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 0.002 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.003 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.003 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.004 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.004 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.004 |
| >gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 7e-34
Identities = 82/332 (24%), Positives = 131/332 (39%), Gaps = 46/332 (13%)
Query: 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY-QMALSIKPNFSQSLNNLG 375
+A + + NP A NL + A+ ++A + P+ ++ L +L
Sbjct: 84 TLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLI 143
Query: 376 VVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL--------- 420
Y + G+ A +E+A+ P Y L ++ S
Sbjct: 144 RFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQ 203
Query: 421 ------AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQ 474
L DP A N+LL + N +
Sbjct: 204 LALFLGIYGFSLAYLADDPLKNLAIANQLLKILSQNAPELVR------------------ 245
Query: 475 YTSWDNTKDPE-RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS-AVVKADAK 532
+ D + L +GY+S D +H+V + + YHD ++V YS DA
Sbjct: 246 FPIRDENIKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDAL 305
Query: 533 TIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPV 592
R V K W I +D+ ++A +R D IDILV+L GHT + + + A +PAP+
Sbjct: 306 QERISAAVEK----WYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPI 361
Query: 593 QVTWIGYPNTTGLPTIDYRITDSLADPPETKQ 624
QV+W+GYP TTG P +DY I+D PP ++
Sbjct: 362 QVSWLGYPATTGSPNMDYFISDPYTVPPTAEE 393
|
Length = 620 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-22
Identities = 104/418 (24%), Positives = 160/418 (38%), Gaps = 50/418 (11%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L A + + N+F +A AL + VL D GNV+A + KG L LA ++ +A+ L
Sbjct: 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL-AIVLTDLGTSLKLA 170
P N + + G E AE + AL P A L A+V +
Sbjct: 223 RPNNIAVLLALATILIEAGE-FEEAEKHADALLKKAPNSPLAHYLKALV------DFQ-K 274
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA---LGCYEKAA----LERPM 223
N +D + +ALK P Y PA G +L + A L K A R +
Sbjct: 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL 334
Query: 224 YAEAYCNM---------------------------GVIYKNRGDLESAIACYERCLAVSP 256
A + G Y GD E A + + P
Sbjct: 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394
Query: 257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316
E A + ++ L GD ++ +A + A + A L ++Y +F
Sbjct: 395 --ENAAARTQLGISKLSQ-----GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQF 447
Query: 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376
D A+ + P A N LG IY + +L KA E ++ ALSI+P+F + NL
Sbjct: 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507
Query: 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
+ +G D A + EK + +P A L LY G+ A+ E+ +++P
Sbjct: 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 1e-21
Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394
EA NLG +Y + D+A+E Y+ AL + P+ + + NL Y GK + A E EKA
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
+ +P A+AY NLG+ Y G A++AYE+ L++DP+
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 3e-20
Identities = 39/99 (39%), Positives = 56/99 (56%)
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
L +LG G+ + ++ Y +AL++DP A AYYNL Y +L +Y+ AL YEKA
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
P A+AY N+G+ Y G E A+ YE+ L + PN
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 6e-20
Identities = 104/440 (23%), Positives = 148/440 (33%), Gaps = 83/440 (18%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-------- 114
F A E D N A GI Q A A +LDP+
Sbjct: 378 DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL 437
Query: 115 --------------------------NACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
NA H G +Y +G L +A E++ KALS +P
Sbjct: 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497
Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
+ PAA LA + D+ GN D IQ++ + L IDP A L +Y +
Sbjct: 498 FFPAAANLARI--DIQE-----GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
A+ EKAA P E + Y +G L+ A+A +P + A
Sbjct: 551 EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-----DSPEAWL 605
Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
+ LG GD+N+ V+ +KK L A A+ L AY M + AI + A
Sbjct: 606 M--LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663
Query: 329 FNPHCAEACNNLGVIYKDRDNLD----------------------------------KAV 354
P EA L + + A+
Sbjct: 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI 723
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ Y+ AL P+ SQ+ L G A + +E + +P A L LY
Sbjct: 724 QAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA 782
Query: 415 AGSISLAIDAYEQCLKIDPD 434
AI Y+ +K PD
Sbjct: 783 QKDYDKAIKHYQTVVKKAPD 802
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 3e-19
Identities = 96/415 (23%), Positives = 150/415 (36%), Gaps = 20/415 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKG-ICLQMQNMGRLAFDSFSEAVKLDP 113
A IL +F +A + +L+K + AH K + Q +N A ++ +A+K P
Sbjct: 234 ATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED-ARETLQDALKSAP 292
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ A G G L +A + ++ L P+ A LA + L+L G
Sbjct: 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ------LRL-GRV 345
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+ I AL +DP A LG Y L ++ A KA P A A +G+
Sbjct: 346 DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK-KA 292
++GD AIA E + P A + ++ G K + A
Sbjct: 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
+N LG Y A +E A P A NL I N D
Sbjct: 466 SLHNL--------LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
A++ ++ L+I P +++ L +Y G + A +EKA NP E L Y
Sbjct: 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 467
G + A+ + PDS A +L + G +K + +
Sbjct: 578 LGKGQLKKALAILNEAADAAPDSPEAWL--MLGRAQLAAGDLNKAVSSFKKLLAL 630
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 8e-19
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
AL +LG GD ++ + YY+KAL + ADA YNL AY ++ K++ A+ YE A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
+P A+A NLG+ Y ++A+E Y+ AL + PN
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41 | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 1e-18
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIW 547
L IGYVS D+ H S+ +++ H+ +V Y+ + D T FR KVM + +
Sbjct: 1 LRIGYVSSDFGNHPTSHLMQSIPGMHNRSKVEVFCYA--LSPDDGT-NFRSKVMAESEHF 57
Query: 548 RDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLP 606
D+ I K A + +D I ILV + G+T + + A +PAP+QV W+GYP T+G
Sbjct: 58 VDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGAT 117
Query: 607 TIDYRITDSLADPPE 621
+DY ITDS+ P E
Sbjct: 118 FMDYIITDSVTSPME 132
|
This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 4e-18
Identities = 91/345 (26%), Positives = 142/345 (41%), Gaps = 18/345 (5%)
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
S A+ LDP + A + G Y G +AAE KA DP A T LG
Sbjct: 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-------NAAARTQLGI 405
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
S G+ + I A ++DP A L + Y Q+D AL +K ++P A
Sbjct: 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKVKLEGDINQ 284
+ +G IY +GDL A +E+ L++ P+F A N+A I + EG+ +
Sbjct: 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ--------EGNPDD 517
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
+ ++K L + A+ L Y + A+ + E A NP E L Y
Sbjct: 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577
Query: 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404
+ L KA+ A P+ ++ LG G ++ A +K +A P A A
Sbjct: 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637
Query: 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA--GQNRLLAMN 447
L Y + + AI + ++ L++ PD+ A G +LL
Sbjct: 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.0 bits (203), Expect = 2e-17
Identities = 78/283 (27%), Positives = 124/283 (43%), Gaps = 13/283 (4%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGV-VYSELMQYDTALGCYEKAALERP--MYAEAYCNMGV 233
+ EAL A A G+ + L + AL E+A P A + +
Sbjct: 8 LAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLAL 67
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
G LE A+ E+ L + N+A AL +LG ++ G + + +KAL
Sbjct: 68 ALLKLGRLEEALELLEKALEL-----ELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 294 -YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDN 349
A E+ ++ A+ YE A +P AEA LG + +
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 350 LDKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
++A+E + AL + P+ +++L NLG++Y GK + A E EKA+ +P AEA NL
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 451
+L + G A++A E+ L++DPD N G LL + E
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALE 285
|
Length = 291 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 5e-17
Identities = 34/100 (34%), Positives = 56/100 (56%)
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
+A+ NLG Y ++ +D A+ +YE A +P A+A NL Y ++A+E Y+ A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400
L + P+ +++ NLG+ Y GK + A E EKA+ +P
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 3e-16
Identities = 80/379 (21%), Positives = 140/379 (36%), Gaps = 16/379 (4%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L+ A + +A+A E E + +E + + + A +EA
Sbjct: 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
P + A G G L +A S+ K L+ P A ++L D +K
Sbjct: 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALAL---LLLADAYAVMK--- 649
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231
N I AL++ P A L + + ++A + + P A +
Sbjct: 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709
Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
G +Y + D +AI Y + L +P+ + A L + G+ + V +
Sbjct: 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK--------LHRALLASGNTAEAVKTLEA 761
Query: 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351
L + + A L Y +D AI Y+ P A NNL +Y + +
Sbjct: 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-P 820
Query: 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411
+A+E + AL + PN L+ LG + +G+ D A ++ KA+ P A +L +
Sbjct: 821 RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880
Query: 412 YRDAGSISLAIDAYEQCLK 430
G + A ++ L
Sbjct: 881 LLATGRKAEARKELDKLLN 899
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 4e-15
Identities = 32/99 (32%), Positives = 45/99 (45%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
A NLG +Y +L YD AL YEKA P A+AY N+ Y G E A+ YE+ L
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
+ P+ A N+ +A LG + + +
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 6e-14
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 4/157 (2%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A L + Y E ++A + A +P A L + Y+ L+KA + ++
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGS 417
AL++ PN LNN G QGK + A + E+AI P A + N G+ AG
Sbjct: 91 ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150
Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 454
A + L+IDP + LA Y G
Sbjct: 151 FDKAEKYLTRALQIDPQRPES--LLELAELYYLRGQY 185
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-13
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+ L+ N+ + +AL YE LE D N +A+ A + + +A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
++LDP NA A+ + G+ Y G+ EA E+Y KAL DP+
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-13
Identities = 102/440 (23%), Positives = 161/440 (36%), Gaps = 57/440 (12%)
Query: 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
E I +N + A A++ DP +A A G +Y G A + K
Sbjct: 22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRK 81
Query: 142 ALSADPS----------------------------YKPAAECLAIVLTDLGTSLKLAGNT 173
ALS E A +L G + G
Sbjct: 82 ALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQL 141
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+ + Y +AL IDP A L + ++D A ++ P +A G
Sbjct: 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201
Query: 234 IYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDL-GTKVKLEGDI----NQG 285
+ + G++E A+A Y + +A+ PN +A + I + + + + N
Sbjct: 202 LLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSP 261
Query: 286 VAYYKKAL--YYNWHYADAMYNLGVA------YGEMLKFDMAIVFY----ELAF-HFN-- 330
+A+Y KAL + +Y DA L A Y L A + E A+ + N
Sbjct: 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQI 321
Query: 331 ----PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
P+ +A L I +D+A+ AL + P+ +L+ LG Y G +
Sbjct: 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
AAE + KA +P A A LG+ G S AI E ++DP+ A LL +
Sbjct: 382 AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD--LLLIL 439
Query: 447 NYINEGHDDKLFEAHRDWGK 466
+Y+ G DK A + K
Sbjct: 440 SYLRSGQFDKALAAAKKLEK 459
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-13
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G LY G EA E Y KAL DP A +L + G ++ ++ Y +
Sbjct: 7 GNLYYKLGDYDEALEYYEKALELDPDN-------ADAYYNLAAAYYKLGKYEEALEDYEK 59
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
AL++DP A AYYNLG+ Y +L +Y+ AL YEKA
Sbjct: 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 4e-13
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428
++L NLG +Y G D A E EKA+ +P A+AY NL Y G A++ YE+
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 429 LKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460
L++DPD+ A L + Y G ++ EA
Sbjct: 61 LELDPDNAKA--YYNLGLAYYKLGKYEEALEA 90
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-11
Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 27/251 (10%)
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-----FEIAKNNMA 266
C +++ E + A Y + ++AI + L PN F + K +A
Sbjct: 16 ACGDQSPEE--LIEAA-----KSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLA 68
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VFYEL 325
GD +KAL + + L AY KF +
Sbjct: 69 ------------LGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGK 116
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
+ AE G+ Y L+ A + Y+ AL+I P + L + + + D
Sbjct: 117 TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD 176
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A +I++ + A+P +A G L G+I LA+ AY + + + P++
Sbjct: 177 EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATI 236
Query: 446 MNYINEGHDDK 456
+ I G ++
Sbjct: 237 L--IEAGEFEE 245
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-10
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-ISLAIDAYE 426
+++L NLG G D A E EKA+ +P AEAY NL + Y G A++ E
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 427 QCLKIDP 433
+ L++DP
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-10
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIAC 247
A A NLG +L YD A+ YEKA P AEAY N+ + Y G D E A+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 248 YERCLAVSP 256
E+ L + P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-10
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-DAAAEMIE 392
AEA NLG + D+A+E Y+ AL + P+ +++ NL + Y GK + A E +E
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 393 KAIAANP 399
KA+ +P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-10
Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 6/156 (3%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A A L + Y + + A E A +P A Y+ D A E Y+
Sbjct: 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDAG 416
ALS+ PN LNN G QG+ + A + E+A+A P Y ++ NLG+ AG
Sbjct: 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAG 153
Query: 417 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
A + ++ L++DP LA + G
Sbjct: 154 QFDQAEEYLKRALELDPQ--FPPALLELARLHYKAG 187
|
Length = 250 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 7e-10
Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
S A + L G+ + + +AL+ DP AY L + Y +L +
Sbjct: 21 SSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE 80
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
+ A + +A P + N G +G E A+ +E+ + P + A
Sbjct: 81 LEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYP----QPA 135
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
+L + G GD ++ Y +AL + +++ L
Sbjct: 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 7e-10
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+A ++ +A++ DP + A+ + Y+ G L +A +S+ +AL+ +P+
Sbjct: 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-------GD 100
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYE 215
VL + GT L G + +Q++ +A++ DP Y A + N G+ + +D A
Sbjct: 101 VLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+A P E+ + +Y RG + A A ER
Sbjct: 160 RALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 8e-10
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL-------ERPMYAEAYCNMGVIYKNRG 239
P A A NL +V L YD AL EKA + P A A N+ +Y G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 240 DLESAIACYERCLAVSPN 257
D + A+ E+ LA+
Sbjct: 61 DYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-09
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGS 417
P+ + +LNNL +V G D A E++EKA+ +P A A NNL LY G
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 418 ISLAIDAYEQCLKIDPD 434
A++ E+ L +
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 42/206 (20%), Positives = 75/206 (36%), Gaps = 45/206 (21%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A+ + + Y +GDLE A ++ L P+ +A +A+ LG ++ +
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG-------ELEK 83
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
+++AL N + D + N G + K++ A+ +E A
Sbjct: 84 AEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA-----------------I 126
Query: 345 KDRDNLDKAVECYQMALSIKPNFSQ---SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
+D P + Q SL N G+ G D A + + +A+ +P
Sbjct: 127 ED------------------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQ 427
E+ L LY G A E+
Sbjct: 169 PESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 6e-09
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-------PNFSQSLNNLGVVYTVQG 382
+P A A NNL ++ + + D+A+E + AL + P +++LNNL +Y G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 383 KMDAAAEMIEKAIAANP 399
D A E +EKA+A
Sbjct: 61 DYDEALEYLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 8e-09
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 7/146 (4%)
Query: 72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131
+ LE D + A++ + Q A DSF A+ L+P N + G +G+
Sbjct: 55 DKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114
Query: 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY-EALKIDPHY 190
+A + + +A+ DP Y A L + G AG+ D +KY AL+IDP
Sbjct: 115 YEQAMQQFEQAIE-DPLY----PQPARSLENAGLCALKAGDF-DKAEKYLTRALQIDPQR 168
Query: 191 APAYYNLGVVYSELMQYDTALGCYEK 216
+ L +Y QY A E+
Sbjct: 169 PESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA-ALERPMYAEAYC--NMGVIYKNRGDLESAIAC 247
A YY G+ +Y AL YE+A LE +Y NMG+IY + G+ + A+
Sbjct: 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY 94
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
Y + L ++P A NN+A+ G K + GD ++ A + KA Y W A +
Sbjct: 95 YHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY-WKQAIRLA 150
|
Length = 172 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 12/161 (7%)
Query: 110 KLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168
D A + Y ++G L A E+ KAL DP A LA+ L
Sbjct: 24 TTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL----- 78
Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---A 225
G + + AL ++P+ N G + +Y+ A+ +E+ A+E P+Y A
Sbjct: 79 --GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQ-AIEDPLYPQPA 135
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
+ N G+ GD + A R L + P + +A
Sbjct: 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA 176
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-07
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
EA + G A + + +A++LDP NA A+ + Y G+ EA E Y KA
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
L DP A +LG + G ++ ++ Y +AL++DP+
Sbjct: 61 LELDPDN-------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 13/185 (7%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A L + Y E + A +KA P AY + + Y+ G+LE A + R
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA----LYYNWHYADAMYNL 306
L ++PN NN GT + +G Q + +++A LY A ++ N
Sbjct: 91 ALTLNPNNGDVLNN-------YGTFLCQQGKYEQAMQQFEQAIEDPLYP--QPARSLENA 141
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
G+ + FD A + A +P E+ L +Y R A +
Sbjct: 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201
Query: 367 FSQSL 371
++SL
Sbjct: 202 TAESL 206
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-07
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
AEA N+G GD + AI YE+ L + P+ A N+A+A LG + +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYE------E 56
Query: 285 GVAYYKKAL 293
+ +KAL
Sbjct: 57 ALEDLEKAL 65
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-07
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDNLDKAVEC 356
A+A+ NLG A ++ +D AI YE A +P AEA NL + Y K + ++A+E
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 357 YQMALSIKP 365
+ AL + P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-07
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-------------- 384
N+G+IY DKA+E Y AL + P +LNN+ V+Y +G+
Sbjct: 77 NMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALF 136
Query: 385 DAAAEMIEKAIAANP-TYAEAYNNL 408
D AAE ++AI P Y EA N L
Sbjct: 137 DKAAEYWKQAIRLAPNNYIEAQNWL 161
|
Length = 172 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-06
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-MQYDTALGCY 214
A L +LG +L G+ + I+ Y +AL++DP A AYYNL + Y +L Y+ AL
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 215 EKA 217
EKA
Sbjct: 62 EKA 64
|
Length = 69 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 12/162 (7%)
Query: 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
LQ + A + +A++ DP AH Y+ G A ESY KALS P+
Sbjct: 46 LQQGDY-AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-- 102
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYD 208
VL + G L G ++ +Q++ AL DP Y + NLG+ + Q+D
Sbjct: 103 -----GDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFD 156
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A ++A P + A + ++ GD A ER
Sbjct: 157 QAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198
|
Length = 250 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
P A A N+ ++ + GD + A+ E+ L ++ A AL +L G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 281 DINQGVAYYKKAL 293
D ++ + Y +KAL
Sbjct: 61 DYDEALEYLEKAL 73
|
Length = 78 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 1e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
A+A NLG Y D+A+E Y+ AL + PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 1e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
A+A N+G Y G + A+ YE+ L ++PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.8 bits (117), Expect = 2e-06
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 11/212 (5%)
Query: 38 AVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGI-CLQMQN 96
A+ L + L+ +L + K+ +AL L E L D A + L
Sbjct: 85 ALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144
Query: 97 MGRLAFDSFSEAVKLDP---QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
A + + +A++LDP + A A G L + GR EA E KAL +P A
Sbjct: 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204
Query: 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213
L +LG G ++ ++ Y +AL++DP A A YNL ++ EL +Y+ AL
Sbjct: 205 ------LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEA 258
Query: 214 YEKA-ALERPMYAEAYCNMGVIYKNRGDLESA 244
EKA L+ +Y + ++ + LE A
Sbjct: 259 LEKALELDPDLYNLGLALLLLLAEALELLEKA 290
|
Length = 291 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYD 208
LA L +L L+ G+ + ++ +AL++ P A A NL +Y L YD
Sbjct: 4 LAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63
Query: 209 TALGCYEKA 217
AL EKA
Sbjct: 64 EALEYLEKA 72
|
Length = 78 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--------------M 384
N+G+I+ KA+E Y AL P Q+LNN+ V+ +G+
Sbjct: 77 NIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136
Query: 385 DAAAEMIEKAIAANPT-YAEAYNNL 408
D AAE ++AIA P Y EA N L
Sbjct: 137 DQAAEYWKQAIALAPGNYIEAQNWL 161
|
Length = 168 |
| >gnl|CDD|237080 PRK12370, PRK12370, invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 13/150 (8%)
Query: 331 PHCAEACNNLGV----IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
P+CA A L + I+ ++ + KA E A + N Q+L LG++ T+ +
Sbjct: 297 PYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
+ + ++A +P A+ G AG + A+ +CLK+DP AG +L +
Sbjct: 357 GSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW-I 415
Query: 447 NYINEGHDDKLFEAHRDWGKRFMRLYSQYT 476
Y + G DD + L SQ+
Sbjct: 416 TYYHTGIDDAIRLG--------DELRSQHL 437
|
Length = 553 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
AEA N+G Y GD + A+ YE+ L + PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
AEA NLG Y + D+A+E Y+ AL + PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 5/136 (3%)
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
L G+ + +AL+ DP Y A+ Y +L + D A Y KA
Sbjct: 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL 98
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
P + N G +G E A+ +ER LA P + + L +LG G
Sbjct: 99 APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAY----GEPSDTLENLGLCALKAG 153
Query: 281 DINQGVAYYKKALYYN 296
+Q Y K+AL +
Sbjct: 154 QFDQAEEYLKRALELD 169
|
Length = 250 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
A+A NLG Y G A++ YE+ L+++P+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33
|
Length = 34 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 5/178 (2%)
Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
+ L T + L GD + +A +K+ + + G F A+ A
Sbjct: 69 IAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128
Query: 329 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388
P EA N LG D+A Y+ AL + PN NNLG+ ++G ++ A
Sbjct: 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
++ A + + NL ++ G A D Q N + A+
Sbjct: 189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ-----ELLSEQAANNVAAL 241
|
Length = 257 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 27/130 (20%), Positives = 47/130 (36%)
Query: 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199
+L+ A +L G + GN + + +A ++ P A+ LG
Sbjct: 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142
Query: 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
+L ++D A Y +A P N+G+ RGDLE A
Sbjct: 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202
Query: 260 IAKNNMAIAL 269
+ N+A+ +
Sbjct: 203 RVRQNLALVV 212
|
Length = 257 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
G D A +E A+A P AEA LG G ++ A L DPD
Sbjct: 10 AGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64
|
Length = 65 |
| >gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
GV+Y G A +A+A P E +N LG+ AG+ A +A++ L++DP
Sbjct: 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131
Query: 435 SRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPL 488
A NR +A+ Y G KL A D + Y D+ DP R L
Sbjct: 132 YNYAHLNRGIALYY---GGRYKL--AQDD----LLAFYQ-----DDPNDPFRSL 171
|
Length = 297 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 59/301 (19%), Positives = 110/301 (36%), Gaps = 52/301 (17%)
Query: 101 AFDSFSEAV---KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
A +F +A+ KL + A A G +G+ +EA K++ DP + A
Sbjct: 313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRA 372
Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYE-ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
+ +LG D ++ ++ ALK++ YY+ ++ ++ A Y+K
Sbjct: 373 SMNLELGDP--------DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
+ P + ++ +GV G + S++A + RC P N L D
Sbjct: 425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-- 482
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--- 333
+ +A+ KFD AI EL P
Sbjct: 483 ------------FDEAIE--------------------KFDTAI---ELEKETKPMYMNV 507
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
N +++ + + +A + AL I P ++ + + QG +D A ++ E+
Sbjct: 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567
Query: 394 A 394
A
Sbjct: 568 A 568
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 18/172 (10%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+ Y +G +A ++ KAL DPSY A A LG LA + Y +
Sbjct: 42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG-ENDLAD------ESYRK 94
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRG 239
AL + P+ N G + + A+ +E+A L P Y ++ N+G+ G
Sbjct: 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA-LADPAYGEPSDTLENLGLCALKAG 153
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
+ A +R L + P F A +A GD Y ++
Sbjct: 154 QFDQAEEYLKRALELDPQFPPALLELARLH-------YKAGDYAPARLYLER 198
|
Length = 250 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
AEA NLG Y G A++ YE+ L++DP+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 23/181 (12%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
L L A + Q EA K A L + Y + Y A
Sbjct: 9 SLVFSLALGACVTDPAPSRQTDRN---EAAK-------ARLQLALGYLQQGDYAQAKKNL 58
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
EKA P Y A+ Y+ G+ + A Y + L+++PN NN G
Sbjct: 59 EKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN-------YGA 111
Query: 275 KVKLEGDINQGVAYYKKAL----YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+ +G + + +++AL Y +D + NLG+ + +FD A + + A +
Sbjct: 112 FLCAQGRPEEAMQQFERALADPAYG--EPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169
Query: 331 P 331
P
Sbjct: 170 P 170
|
Length = 250 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
A AY +G IY GD E A YE+ L + PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
G +AAAE+ +A+ P +A + LG AG A AYE+ L++DP+
Sbjct: 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68
Query: 442 RLLAM 446
+L +
Sbjct: 69 KLAVL 73
|
Length = 287 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAF-------HFNPHCAEACNNLGVIYKDRDNLDK 352
A A+ NL + + +D A+ E A +P A A NNL +Y + D+
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64
Query: 353 AVECYQMALSIKPN 366
A+E + AL+++
Sbjct: 65 ALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/129 (23%), Positives = 44/129 (34%), Gaps = 7/129 (5%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
E A L R +LA+ + + E +G A
Sbjct: 65 EDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLR 124
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+A +L P + A G GR EA +Y +AL P E + +LG S
Sbjct: 125 KAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-----NE--PSIANNLGMS 177
Query: 167 LKLAGNTQD 175
L L G+ +D
Sbjct: 178 LLLRGDLED 186
|
Length = 257 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 67/310 (21%), Positives = 123/310 (39%), Gaps = 38/310 (12%)
Query: 2 AWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVG--STLKGFEGKDALSYANILR 59
A +E E Q LK P+S S A L + + + A LR
Sbjct: 278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLR 337
Query: 60 S-----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ K ++ALA +E D +++I + A + F +A+KL+ +
Sbjct: 338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE 397
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ + H L+ +G +A + Y K++ DP + LG + G+
Sbjct: 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIA 450
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELM----QYDTALGCYEKA-ALER---PMYAE 226
+ + K P AP YN Y EL+ ++D A+ ++ A LE+ PMY
Sbjct: 451 SSMATFRRCKKNFPE-APDVYNY---YGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506
Query: 227 AYCNMG---VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL-EGDI 282
+ +++ + D A E+ L + P +IA MA ++ L +GD+
Sbjct: 507 VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA--------QLLLQQGDV 558
Query: 283 NQGVAYYKKA 292
++ + +++A
Sbjct: 559 DEALKLFERA 568
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
L Y++ DKA+E Y+ L PN L L + GK A + +++ +A
Sbjct: 91 ALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARF 150
Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH-DDKL 457
PT A Y L + R A A+ A++Q L ++PD+ A + + +L
Sbjct: 151 PTDAARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRILTRLGAPPAAARL 210
Query: 458 FEAHRDW 464
+ + D
Sbjct: 211 AKQYPDL 217
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|220721 pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding domain | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
AL Y A+L P E Y +GVI G+ A+ Y R LAV F AKNN+ +
Sbjct: 1 ALRYYLLASLLLPSSGEPYNQLGVIALYVGNHLDAVYYYLRSLAVRNPFPTAKNNLELLF 60
Query: 270 TD 271
Sbjct: 61 EK 62
|
Est1 is a protein which recruits or activates telomerase at the site of polymerisation. This is the DNA/RNA binding domain of EST1. Length = 276 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
Y +AL++DP+ A AYYNL ++ L QYD AL
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
|
Length = 34 |
| >gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 42/234 (17%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
Q D A+ + + E P EA+ +G ++++RG+++ AI ++ L SP+ + +
Sbjct: 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQT-LLESPDLTFEQRLL 108
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A L LG Y A + A+ ++N V GE +
Sbjct: 109 A--LQQLGRD-------------YMAAGLLD--RAEDIFNQLVDEGEFAE---------- 141
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTV 380
A L IY+ +KA++ + + + +Q L
Sbjct: 142 ---------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
+D A E+++KA+ A+ A LG + G A++A E+ L+ +P+
Sbjct: 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246
|
Length = 389 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 2e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
AEA N+G+ Y GD E A+ YE+ L + PN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVF 322
+ A AL +LG + GD ++ + Y+KAL + A+A YNL +AY ++ K ++ A+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 323 YELAFHFNP 331
E A +P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
A AY LG +Y G A + YE+ L++DP++
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 59/303 (19%), Positives = 90/303 (29%), Gaps = 80/303 (26%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A D F E ++ DP+ AH G L++ G V+ A H+ L P LA+
Sbjct: 54 AVDLFLEMLQEDPETFEAHLTLGNLFRSRGE-VDRAIRIHQTLLESPDLTFEQRLLAL-- 110
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
LG Y D A + + E
Sbjct: 111 ----------------------------------QQLGRDYMAAGLLDRAEDIFNQLVDE 136
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP---NFEIAKNNMAIALTDLGTKVK 277
A + IY+ + E AI ER + + EIA+ +A L +
Sbjct: 137 GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-- 194
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
D+++ A L A + C A
Sbjct: 195 ---DVDR-----------------ARELLKKALQA-----------------DKKCVRAS 217
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
LG + + + KAVE + L P + S+ L L Y GK + +A+
Sbjct: 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277
Query: 397 ANP 399
N
Sbjct: 278 TNT 280
|
Length = 389 |
| >gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV-LYRDAGSI 418
AL+++P+ + + N LG+ T G DAA E + + +PTY AY N G+ LY G
Sbjct: 90 ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG-GRY 148
Query: 419 SLAIDAYEQCLKIDPD 434
LA D + DP+
Sbjct: 149 ELAQDDLLAFYQDDPN 164
|
Length = 296 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 44/180 (24%), Positives = 67/180 (37%), Gaps = 19/180 (10%)
Query: 190 YAPAYYNLGVVYSELM----QYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDL 241
A A LG +Y A Y AA + AEA N+G++Y N DL
Sbjct: 72 DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--GLAEALFNLGLMYANGRGVPLDL 129
Query: 242 ESAIACYER-CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
A+ YE+ + +A + +A + + D + + Y+KA
Sbjct: 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP 187
Query: 301 DAMYNLGVAY----GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356
DA LG Y G A +Y+ A AC NLG++Y + + + KA
Sbjct: 188 DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLMYLNGEGVKKAAFL 245
|
Length = 292 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 4e-04
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG-RLAFDSFSEAVKLDP 113
N L + +A+ YE LE D N EA+ + A + +A++LDP
Sbjct: 10 GNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA 217
A A YNLG Y +L +YD AL YEKA
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKA 27
|
Length = 34 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 352 KAVECYQMALSIKPN---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+A+E Y+ AL ++ + S L N+G++Y G+ D A E +A+ NP A NN+
Sbjct: 53 EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112
Query: 409 GVLYRDAGSIS--------------LAIDAYEQCLKIDPDSRNAGQNRL 443
V+Y G + A + ++Q +++ P++ QN L
Sbjct: 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWL 161
|
Length = 172 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 6e-04
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
L + D+A+ + AL+ P +++L LG QG++ AA ++ A+AA+P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 400 TYA 402
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
AL+I+P+ + N LG+ T G DAA E + + +PTY A+ N G+ G
Sbjct: 91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE-GHDDKLFEAHRDWGKRFMRLYSQYTSW 478
LA D + DP+ R L + Y+NE D K +A + +R + + W
Sbjct: 151 LAQDDLLAFYQDDPND----PFRSLWL-YLNEQKLDPK--QAKTNLKQRAEKSDKEQWGW 203
|
Length = 297 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 6e-04
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
+ EKA+ +P AEAY NL +L + G A+
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
|
Length = 34 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
AL Y + + A E LE D AH+ + Q LA +S+ +A+
Sbjct: 42 ALGYLQ----QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
L P N + G +GR EA + + +AL ADP+Y + L +LG A
Sbjct: 98 LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERAL-ADPAYGEP----SDTLENLGLCALKA 152
Query: 171 GNTQDGIQKYYE-ALKIDPHYAPA 193
G D ++Y + AL++DP + PA
Sbjct: 153 GQF-DQAEEYLKRALELDPQFPPA 175
|
Length = 250 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 9e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
AEA NLG+ Y + ++A+E Y+ AL + PN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.001
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
AEA NLG+ Y G A++AYE+ L++DP+
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
G+ A +++A+ ANP +EA LG Y G + A+ +E+ L +DP S N +
Sbjct: 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341
Query: 441 -NRLLAMN-Y---INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNT 481
LL +N Y I +G D +A+ RLY Q DNT
Sbjct: 342 WESLLKVNRYWLLIQQG--DAALKANNLAQAE--RLYQQARQVDNT 383
|
Length = 1157 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.002
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG-RLVEAAESY 139
N EA G L A +++ +A++LDP NA A+ + + Y G EA E
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 140 HKALSADP 147
KAL DP
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.002
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
AEA NLG G AI+AYE+ L++DPD+ A N A+ Y+ G D +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL--ALAYLKLGKDYE 55
|
Length = 69 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAA-LERPMYAEAYC--NMGVIYKNRGDLESAIAC 247
A YY G+ +Y AL Y +A LE Y +Y N+G+I+ + G+ A+
Sbjct: 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
Y + L +P A NNMA+ G + +GD A++ +A Y W A
Sbjct: 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY-WKQA 146
|
Length = 168 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.003
Identities = 13/66 (19%), Positives = 23/66 (34%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
++ + G EA E KAL A L +L G+ + ++ +
Sbjct: 12 ALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEK 71
Query: 183 ALKIDP 188
AL +
Sbjct: 72 ALALRE 77
|
Length = 78 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
A A LG IY + ++A E Y+ AL + PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
A A+YNLG AY ++ K+D A+ +YE A NP+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
+M+A +E + NP AE ++ LG Y G S A+ AY L++ D+
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI 192
|
Length = 287 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 274 TKVKLEGDINQGVAYYKKALYYNWH---YADAMYNLGVAYGEMLKFDMAI-VFYEL--AF 327
+ K E NQ L A Y + ++D A+ + L A
Sbjct: 281 IRAKYEALPNQ----QAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ 336
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
NP+ E G I + + +A+E + AL++ PN NL GK A
Sbjct: 337 PDNPYYLEL---AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
++ + + +P ++ L Y + G+ + A+ A
Sbjct: 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431
|
Length = 484 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 625 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| PF13844 | 468 | Glyco_transf_41: Glycosyl transferase family 41; P | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 100.0 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.97 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.97 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.96 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.96 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.96 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.96 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.96 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.96 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.96 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.95 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.95 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.94 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.94 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.94 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.94 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.94 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.93 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.91 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.91 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.9 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.9 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.9 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.9 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.9 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.9 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.89 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.89 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.89 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.89 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.89 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.89 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.88 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.88 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.88 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.88 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.88 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.88 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.87 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.87 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.87 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.85 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.85 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.85 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.85 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.84 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.84 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.84 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.83 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.83 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.83 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.83 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.82 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.82 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.82 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.82 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.81 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.8 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.79 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.78 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.74 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.73 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.71 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.7 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.7 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.68 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.67 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.67 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.67 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.67 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.64 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.62 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.59 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.59 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.59 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.59 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.57 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.55 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.55 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.53 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.53 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.51 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.48 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.48 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.47 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.47 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.45 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.45 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.42 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.39 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.31 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.3 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.3 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.3 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.27 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.26 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.23 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.21 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.19 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.18 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 99.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.17 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.16 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.16 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.15 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.14 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.14 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.12 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.11 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.1 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.09 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.09 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.08 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.08 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.06 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.05 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.04 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.04 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.04 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.04 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.04 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.04 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.04 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.03 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.03 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.03 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.03 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.03 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.02 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.02 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.02 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.02 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.02 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.01 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.0 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.99 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.98 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.98 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.97 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.97 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.95 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.91 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.91 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.9 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.87 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.87 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.86 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.84 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.83 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.82 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.82 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.81 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.8 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.8 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.79 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.77 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.75 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.72 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.69 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.69 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.67 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.66 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.65 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.65 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.61 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.6 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.58 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.55 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.55 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.54 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.52 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.47 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.43 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.42 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.42 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.41 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.39 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.38 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.37 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.35 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.33 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.33 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.32 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.29 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.29 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 98.25 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.19 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.18 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 98.18 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.18 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.18 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.15 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 98.14 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.14 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.13 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.12 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.11 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 98.11 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.08 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.06 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.04 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.04 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 98.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.03 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 98.0 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.99 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.97 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.94 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.93 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.92 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.89 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.89 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.88 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.86 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.86 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.86 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.86 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.86 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.85 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.85 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.84 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.83 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.74 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 97.74 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.74 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.72 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.67 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.64 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.62 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.58 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.55 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.54 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.53 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.5 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 97.47 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.45 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.43 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.43 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.35 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 97.27 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.24 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.22 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 97.14 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.09 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 97.07 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.01 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.99 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.97 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.97 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.96 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.95 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.93 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.91 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.87 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.84 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.83 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.79 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.77 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.69 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.63 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.57 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.56 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.52 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 96.51 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.46 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.39 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.39 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.38 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.37 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.37 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.34 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.34 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.32 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.25 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.06 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.05 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.99 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.97 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.92 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.81 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.71 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.67 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.65 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.57 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 95.56 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 95.55 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.45 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.41 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 95.38 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.36 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 95.32 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.28 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.25 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.21 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.12 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.88 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 94.87 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 94.76 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 94.67 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 94.49 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.34 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.21 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.13 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 93.81 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.8 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 93.77 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.58 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 93.35 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.29 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 93.11 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 93.11 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 92.73 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.54 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 92.49 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 92.42 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 92.41 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 92.37 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 92.35 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 92.15 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 92.11 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 92.08 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 91.87 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.83 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.55 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 91.5 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.5 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 91.34 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 91.27 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.25 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 91.14 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 90.86 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 90.6 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 90.59 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.45 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.33 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 90.17 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 89.82 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 89.36 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 89.36 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 89.17 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 89.14 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 88.95 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 88.83 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 88.8 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 88.62 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.54 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.01 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.85 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 87.83 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.25 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 87.14 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.85 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.69 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 86.03 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 85.76 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 85.68 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 85.21 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 85.18 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.31 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.72 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.59 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.54 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 83.42 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 83.22 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.6 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 81.91 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 81.81 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 81.68 | |
| PF04348 | 536 | LppC: LppC putative lipoprotein; InterPro: IPR0074 | 81.3 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 80.46 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-102 Score=734.48 Aligned_cols=561 Identities=40% Similarity=0.583 Sum_probs=532.4
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
.-++.+-.+|+++..+|++++|+..|+.++++.|++.++|.++|.++...|+.+.|..+|..+++++|+...+...+|.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 45677778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 205 (625)
+...|+..+|..+|.++++..|....+ |.++|.++..+|+...|+..|+++++++|+..++|++||.+|...+
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAia-------wsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIA-------WSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeee-------ehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 999999999999999999999976444 8889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHH
Q 006937 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (625)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (625)
.+++|+.+|.+++...|+++.++-++|.+|..+|..+-|+..|++++++.|+.++++.+++.++..+ |+..+|
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~-------G~V~ea 339 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDK-------GSVTEA 339 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc-------cchHHH
Confidence 9999999999999999999999999999999999999999999999999999999888888887775 699999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 006937 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (625)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (625)
..+|.+++.+.|..+++.++||.++.++|++++|..+|.++++..|..+.+..+||.+|.++|++++|+.+|+.++.+.|
T Consensus 340 ~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 340 VDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 006937 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (625)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (625)
..++++.++|..|..+|+...|+.+|.+++..+|..++++.+||.+|...|+..+|+..|+.++++.||.+++..|++.+
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCc-----hHHHHHHHHHHH--HHhhh----------------------------------ccccCCCCCCCCC
Q 006937 446 MNYINEGHD-----DKLFEAHRDWGK--RFMRL----------------------------------YSQYTSWDNTKDP 484 (625)
Q Consensus 446 ~~~~~~~~~-----~~~~~~~~~~~~--~~~~~----------------------------------~~~~~~~~~~~~~ 484 (625)
+.++..|.+ .++.+..++|.. ++... .+++..|.+-+.+
T Consensus 500 lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~ 579 (966)
T KOG4626|consen 500 LQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVK 579 (966)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCC
Confidence 999999987 788888888883 33222 1345667777888
Q ss_pred CCCeEEEEecCCcccchHHHHHHHHHhhccCCcEEEEEeecCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHh
Q 006937 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRE 564 (625)
Q Consensus 485 ~~~lrig~~s~d~~~h~v~~~~~~~~~~~d~~~~ev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 564 (625)
++||||||||+||++||+++|++.++.+|||+++|||||+.++.++.. ||..+.+++++|.|+++++...+|..|++
T Consensus 580 ~~rlrIGYvSsDFgnHp~Shlmqsv~gmHdr~kveVfcYals~~d~t~---fR~kv~~e~ehf~Dls~i~~~kiA~~I~q 656 (966)
T KOG4626|consen 580 EGRLRIGYVSSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALSVNDGTN---FRDKVMKEAEHFVDLSQIPCNKIADKIRQ 656 (966)
T ss_pred cCceEEEeecccccCCchHHHhccCcCcCCccceEEEEEEeecCCCch---HHHHHHhhccceeehhcCChHHHHHHHhh
Confidence 999999999999999999999999999999999999999987654433 78888888999999999999999999999
Q ss_pred CCCcEEEecCCCCCCchhhhhccCCCceEEecccCCCCCCCCCcceEeecCCCCCCCCC
Q 006937 565 DKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETK 623 (625)
Q Consensus 565 ~~idilvdl~g~t~~~~~~~~~~r~APvq~~~~g~~~t~g~~~~Dy~~~d~~~~p~~~~ 623 (625)
|+|||||+|.|||.|+|.+|||+|||||||+|+|||||||+++|||+|+|.++.|++.-
T Consensus 657 D~I~ILvnlnGyTkgarneifAlrPAPIQv~wlGyPgTtGa~~mDYiITDs~tsPl~~a 715 (966)
T KOG4626|consen 657 DKIHILVNLNGYTKGARNEIFALRPAPIQVMWLGYPGTTGATFMDYIITDSVTSPLELA 715 (966)
T ss_pred cCceEEEeccccccccccceeeccCCceeEEeecCCCCCCCceeeEEeecccCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999998753
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-50 Score=379.93 Aligned_cols=328 Identities=25% Similarity=0.386 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 282 INQGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 282 ~~~A~~~~~~~l~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
..-++..+...+..++.++..+.. +...+...+....+...+...+..+|.+..+..+++......|....+...+..
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333555555556667777665333 466677778888888888888899999988888888888777766666555554
Q ss_pred -HHccCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 360 -ALSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 360 -al~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
+....|++......+ +.....+|+..++...++++....|.++.+...+.....+.-.+. ...
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~~~ 196 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------EEA 196 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------hcc
Confidence 777888876655444 777888888888888888888888888666655555433333222 233
Q ss_pred CCChhhhhhHHHH-----hhhccCCCchHHHHHHHHHHHHHhhhc---cccCCCCC-CCCCCCCeEEEEecCCcccchHH
Q 006937 433 PDSRNAGQNRLLA-----MNYINEGHDDKLFEAHRDWGKRFMRLY---SQYTSWDN-TKDPERPLVIGYVSPDYFTHSVS 503 (625)
Q Consensus 433 p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~lrig~~s~d~~~h~v~ 503 (625)
|.+........+. ..++.. +.........+....+.... .+++.|.. ....++|+||||+|+|++.|+||
T Consensus 197 ~tnl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Havg 275 (620)
T COG3914 197 PTNLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAVG 275 (620)
T ss_pred chHHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchHH
Confidence 3333222222111 112211 13333344445555444222 23344441 23457899999999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEeecC-ccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCCCcEEEecCCCCCCchh
Q 006937 504 YFIEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKL 582 (625)
Q Consensus 504 ~~~~~~~~~~d~~~~ev~~y~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~idilvdl~g~t~~~~~ 582 (625)
+++.+++++|||++|||++|+.+ ++.|..+.|++..+ ++|.++.+|+|.++|++|+.|+|||||||+|||..+|+
T Consensus 276 ~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~ 351 (620)
T COG3914 276 FLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRC 351 (620)
T ss_pred HHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccch
Confidence 99999999999999999999998 66788999999887 67999999999999999999999999999999999999
Q ss_pred hhhccCCCceEEecccCCCCCCCCCcceEeecCCCCCCCCCC
Q 006937 583 GMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQ 624 (625)
Q Consensus 583 ~~~~~r~APvq~~~~g~~~t~g~~~~Dy~~~d~~~~p~~~~~ 624 (625)
+|||.|||||||||+|||+|||+|.|||||+|++|.||+.|+
T Consensus 352 ~v~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~ 393 (620)
T COG3914 352 QVFAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEE 393 (620)
T ss_pred hhhhcCCCceEEeecccccccCCCcceEEeeCceecCchHHH
Confidence 999999999999999999999999999999999999999874
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=367.36 Aligned_cols=400 Identities=29% Similarity=0.446 Sum_probs=374.1
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------------------------HHHHHhHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------------------VEAHIGKGICL 92 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------------------~~~~~~la~~~ 92 (625)
.....+++|...++.|+|++|.+....+...+|.+ .+++.++|.++
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANIL 126 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 44558999999999999999999988776665543 56788899999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 006937 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (625)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (625)
...|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|....+ ...+|..+...|+
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca-------~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA-------RSDLGNLLKAEGR 199 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh-------hcchhHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999987655 7778888899999
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (625)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (625)
..+|..+|.++++..|..+.+|.+||.++..+|+...|+..|+++++++|+..++|+++|.+|...+.+++|+.+|.+++
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 006937 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (625)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 332 (625)
.+.|++.. ++.+++-+|..+|..+-|+..|+++++..|..++++.++|..+...|+..+|..+|.+++.+.|.
T Consensus 280 ~lrpn~A~-------a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 280 NLRPNHAV-------AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred hcCCcchh-------hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 99998755 45566777777899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006937 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (625)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (625)
.+++.++||.++..+|.+++|..+|+++++..|..+.++.+||.+|.++|++++|+.+|+.++.+.|..++++.++|..|
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHHH
Q 006937 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462 (625)
Q Consensus 413 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (625)
..+|+...|+++|.+|+.++|...+++.| ++..|-..|+..+++..++
T Consensus 433 ke~g~v~~A~q~y~rAI~~nPt~AeAhsN--Lasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQINPTFAEAHSN--LASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcCcHHHHHHhh--HHHHhhccCCcHHHHHHHH
Confidence 99999999999999999999999999999 4667778888777665543
|
|
| >PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=343.62 Aligned_cols=133 Identities=45% Similarity=0.801 Sum_probs=111.9
Q ss_pred eEEEEecCCcccchHHHHHHHHHhhccCCcEEEEEeecCccC-ChhhHHHHHHhhhcCCceeeCCCCC-HHHHHHHHHhC
Q 006937 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKA-DAKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 565 (625)
Q Consensus 488 lrig~~s~d~~~h~v~~~~~~~~~~~d~~~~ev~~y~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 565 (625)
|||||||+||++||+++|+.+++++|||++|||+||+.++.+ +..+.+++..+ ++|+++.+++ +.++|++|++|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~~~----~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRAEA----DHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHHHS----EEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHHhC----CeEEECccCCcHHHHHHHHHHC
Confidence 799999999999999999999999999999999999988653 45666666654 8999999986 68999999999
Q ss_pred CCcEEEecCCCCCCchhhhhccCCCceEEecccCCCCCCCCCcceEeecCCCCCCCCCC
Q 006937 566 KIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQ 624 (625)
Q Consensus 566 ~idilvdl~g~t~~~~~~~~~~r~APvq~~~~g~~~t~g~~~~Dy~~~d~~~~p~~~~~ 624 (625)
+|||||||+|||.++|+.|||+|||||||+|||||+|||+++|||+|+|++++||+.++
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~ 135 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEE 135 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGG
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999998763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=328.30 Aligned_cols=383 Identities=16% Similarity=0.177 Sum_probs=332.3
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
+..+..+|..++..|+|++|+..|+++++..|+ +..+.++|.||..+|++++|+..++++++++|++..++..+|.++.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 455778999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHH------------------------------HHHHHHH------------------
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPA------------------------------AECLAIV------------------ 159 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~------------------------------~~~~a~~------------------ 159 (625)
.+|++++|+..|..+....+..... +..++..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999999887766544332111 0001110
Q ss_pred --------HHHhHHHH---HHhCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006937 160 --------LTDLGTSL---KLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (625)
Q Consensus 160 --------~~~l~~~~---~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 225 (625)
+..++... ...+++++|++.|++++.. .|....++..+|.++..+|++++|+..|+++++.+|...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 01111111 1236899999999999986 477788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 006937 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (625)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 305 (625)
..+..+|.++...|++++|+..|+++++.+|++...+..++.+ +...|++++|+..|+++++.+|++...+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~-------~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL-------HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 9999999999999999999999999999999988766555554 445689999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH------HHHHHHH-H
Q 006937 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS------LNNLGVV-Y 378 (625)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~~la~~-~ 378 (625)
+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++++.|..... +...+.+ +
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875332 2233333 3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+.
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 447999999999999999999999999999999999999999999999999998876553
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=332.24 Aligned_cols=405 Identities=20% Similarity=0.186 Sum_probs=331.5
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
.++..+..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++..|.+..++..++.+
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 542 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGL 542 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34566778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 205 (625)
+...|++++|+..+++++..+|.+... +..++..+...|++++|+..++++++..|.+...+..+|.++...|
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEP-------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhH-------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 888888888888888888888877655 5566777778888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH----------------
Q 006937 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL---------------- 269 (625)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------------- 269 (625)
++++|+..|+++++..|.++..+..+|.++...|++++|+..|+++++..|++...+..++.++
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888766665554443
Q ss_pred -----------HHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 006937 270 -----------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338 (625)
Q Consensus 270 -----------~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 338 (625)
..+|.++...|++++|+..|++++...|+. ..+..++.++...|++++|+..++++++..|++..++.
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred HhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 334555667788888888888888887776 66777888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006937 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (625)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (625)
.+|.++...|++++|+..|+++++..|+++.++..++.++...|+ .+|+.++++++...|+++..+..+|.++...|++
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 888888888888888888888888888888888888888888888 7788888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHH
Q 006937 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (625)
Q Consensus 419 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (625)
++|+.+|+++++.+|+++.++.++ +..+...|+.+++.+..
T Consensus 854 ~~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 854 DRALPLLRKAVNIAPEAAAIRYHL--ALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHH--HHHHHHcCCHHHHHHHH
Confidence 888888888888888877776664 44555666666554443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=320.82 Aligned_cols=412 Identities=19% Similarity=0.194 Sum_probs=322.5
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------------------------------CCHHH------
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDS----------------------------------GNVEA------ 84 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----------------------------------~~~~~------ 84 (625)
+.++...+.+|..++..|++++|+..++++++..+ +....
T Consensus 178 P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 178 PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHH
Confidence 45667888999999999999999999999865432 11100
Q ss_pred --------------HHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006937 85 --------------HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (625)
Q Consensus 85 --------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (625)
...+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 258 L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~ 337 (1157)
T PRK11447 258 LAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337 (1157)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 013477888999999999999999999999999999999999999999999999999999999865
Q ss_pred HHH--HHH-----HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 151 PAA--ECL-----AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (625)
Q Consensus 151 ~~~--~~~-----a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 223 (625)
... ..+ ......+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|.
T Consensus 338 ~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 338 NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 421 111 1123456888999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH------------------------------------------HHcCCHHHHHHHHHHHHhcCCCcHHH
Q 006937 224 YAEAYCNMGVIY------------------------------------------KNRGDLESAIACYERCLAVSPNFEIA 261 (625)
Q Consensus 224 ~~~~~~~la~~~------------------------------------------~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (625)
+..++..++.++ ...|++++|+..|+++++.+|+++..
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 887766655544 45677778888888888888877655
Q ss_pred HhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------
Q 006937 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA--------------- 326 (625)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a--------------- 326 (625)
+..++.+ +...|++++|+..++++++..|.++..++.++..+...+++++|+..++++
T Consensus 498 ~~~LA~~-------~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 498 TYRLAQD-------LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred HHHHHHH-------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 4444443 344567888888888888777777777777666666666666666555432
Q ss_pred -------------------------HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHc
Q 006937 327 -------------------------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (625)
Q Consensus 327 -------------------------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 381 (625)
++..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 2235667777788888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh----hhHHHHhhhccCCCchHH
Q 006937 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG----QNRLLAMNYINEGHDDKL 457 (625)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~~~~~~~~~~~~~~~~~ 457 (625)
|++++|++.++++++..|++..++..+|.++...|++++|+++|++++...|+++... .....+..+...|+.+++
T Consensus 651 g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 651 GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888888888888888888888888888888888888877655322 222235555666777666
Q ss_pred HHHHHH
Q 006937 458 FEAHRD 463 (625)
Q Consensus 458 ~~~~~~ 463 (625)
...+++
T Consensus 731 ~~~y~~ 736 (1157)
T PRK11447 731 LETYKD 736 (1157)
T ss_pred HHHHHH
Confidence 655543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=324.43 Aligned_cols=367 Identities=15% Similarity=0.112 Sum_probs=329.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHH--------------H
Q 006937 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC--------------A 118 (625)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 118 (625)
.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45888999999999999999999999999999999999999999999999999999999997643 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (625)
...+|.++...|++++|+..|+++++.+|++..+ +..+|.++...|++++|++.|+++++.+|++..++..++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a-------~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYA-------VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2345788999999999999999999999998765 777899999999999999999999999999877765554
Q ss_pred H------------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006937 199 V------------------------------------------VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (625)
Q Consensus 199 ~------------------------------------------~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 236 (625)
. ++...|++++|++.|+++++.+|+++.+++.+|.++.
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4 4456799999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH-------------------------------------Hhchhhhhc
Q 006937 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALT-------------------------------------DLGTKVKLE 279 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------------------------------------~l~~~~~~~ 279 (625)
..|++++|+..++++++..|+++.....++..+. .++..+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999999999999998876655443322 234455667
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
|++++|+.+++ ..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|++.+++
T Consensus 587 G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 587 GKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777877765 57889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA------EAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 360 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
+++..|+++.++..+|.++...|++++|++.+++++...|+.+ .++..+|.++...|++++|+..|++++.
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999876543 4667789999999999999999999986
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=318.68 Aligned_cols=392 Identities=21% Similarity=0.219 Sum_probs=323.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (625)
..+.++..+...|++++|+..+++.+...|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 34445556666666666666666666666777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 006937 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (625)
Q Consensus 130 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~ 209 (625)
|++++|+..|++++...|.+... +..++.++...|++++|+..+++++..+|.+...+..++.++...|++++
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRA-------ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHH
Confidence 77777887777777777776554 55667777778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHH
Q 006937 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (625)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (625)
|+..++++++..|.++..+..+|.++...|++++|+..|+++++..|.+...+..+ +.++...|++++|+..+
T Consensus 586 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 586 ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL-------ADAYAVMKNYAKAITSL 658 (899)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH-------HHHHHHcCCHHHHHHHH
Confidence 88888888888888888888888888888999999999988888888876555444 44444567999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 006937 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (625)
Q Consensus 290 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 369 (625)
+++++.+|++..++..++.++...|++++|+..++.+.+..|.+...+..+|.++...|++++|+..|++++...|++ .
T Consensus 659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 737 (899)
T TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q 737 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998887 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhc
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 449 (625)
.+..++.++...|++++|++.++++++..|++..++..+|.++...|++++|+..|+++++.+|+++.++.++ +..+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL--AWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHH
Confidence 7888999999999999999999999999999999999999999999999999999999999999988877664 44444
Q ss_pred cCCCchHHHH
Q 006937 450 NEGHDDKLFE 459 (625)
Q Consensus 450 ~~~~~~~~~~ 459 (625)
..++ .+...
T Consensus 816 ~~~~-~~A~~ 824 (899)
T TIGR02917 816 ELKD-PRALE 824 (899)
T ss_pred hcCc-HHHHH
Confidence 5555 44433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=297.84 Aligned_cols=394 Identities=11% Similarity=0.001 Sum_probs=343.3
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
......+...+..+...|++.+|+.+++.++...|+++.+++.+|.+....|++++|+..|+++++.+|+++.++..+|.
T Consensus 39 ~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~ 118 (656)
T PRK15174 39 AGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVAS 118 (656)
T ss_pred cccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (625)
++...|++++|+..|++++..+|++... +..++.++...|++++|+..+++++...|+++.++..++ .+...
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a-------~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~ 190 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQI-------FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNK 190 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHc
Confidence 9999999999999999999999998876 667788888999999999999999999999998887765 48899
Q ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHH
Q 006937 205 MQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (625)
|++++|+..++++++..| ........++.++...|++++|+..+++++...|++...+..++.++.. .|+++
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-------~G~~~ 263 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-------SGRSR 263 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCch
Confidence 999999999999999876 3344556678899999999999999999999999988766666665555 56776
Q ss_pred H----HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 284 Q----GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 284 ~----A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
+ |+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++
T Consensus 264 eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 264 EAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 360 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
++..+|++...+..+|.++...|++++|+..|+++++.+|++. ...+++|...|.++++..+.....
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~~~- 410 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLPPER- 410 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCccch-
Confidence 9999999988888889999999999999999999999999864 345567888888888876655333
Q ss_pred hhHHHHhhhccCCCchHHHHHHHHHHH
Q 006937 440 QNRLLAMNYINEGHDDKLFEAHRDWGK 466 (625)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (625)
......++.-..+.....|+...+|+.
T Consensus 411 ~~W~~~~~~~~~~~~~~~~~~~~~~~~ 437 (656)
T PRK15174 411 LDWAWEVAGRQSGIERDEWERRAKWGY 437 (656)
T ss_pred hhHHHHHhcccccCChHHHHHHHHhhH
Confidence 112233333333445566666666764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=293.31 Aligned_cols=364 Identities=20% Similarity=0.173 Sum_probs=309.1
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006937 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (625)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 161 (625)
...+..+|..++..|++++|+..|+++++..|+ +..+.++|.+|..+|++++|+..++++++++|++..+ +.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a-------~~ 198 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA-------LN 198 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-------HH
Confidence 345778899999999999999999999999996 7789999999999999999999999999999998776 77
Q ss_pred HhHHHHHHhCChHHHHHHHHHHHhhCCCC------------------------------HHHH-----------------
Q 006937 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHY------------------------------APAY----------------- 194 (625)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------------------------------~~~~----------------- 194 (625)
.+|.++...|++++|+..|..+...++.. ...+
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 78888888999999988776654433221 1111
Q ss_pred ----------------HHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 195 ----------------YNLGVVY---SELMQYDTALGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (625)
Q Consensus 195 ----------------~~la~~~---~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (625)
..++..+ ...+++++|++.|+++++. .|....++..+|.++..+|++++|+..|++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111 1236799999999999986 47778899999999999999999999999999
Q ss_pred hcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 006937 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (625)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 332 (625)
+.+|+....+..++.++. ..|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 359 ~l~P~~~~~~~~la~~~~-------~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNL-------ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HcCCCcHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 999998766655555554 4679999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH------HH
Q 006937 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA------YN 406 (625)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~ 406 (625)
+...+..+|.++..+|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++.+.|+.... +.
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999875332 22
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHHH
Q 006937 407 NLG-VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462 (625)
Q Consensus 407 ~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (625)
..+ .++...|++++|+.+++++++++|++..++.. ++..+...|+.+++.+..+
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~--la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT--MAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHccCHHHHHHHHH
Confidence 333 33445799999999999999999998876654 4666777787776655443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=289.54 Aligned_cols=368 Identities=12% Similarity=0.018 Sum_probs=327.1
Q ss_pred HhCCCHHHHHHHHHHHHHc---CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 006937 59 RSRNKFVDALALYEIVLEK---DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (625)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (625)
+++.+|+.-.-++...-+. ..++..-....+..+...|++++|+..++.++...|+++.++..+|.+....|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 3444454444444444333 2334455667778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215 (625)
Q Consensus 136 ~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 215 (625)
+..|++++..+|++..+ +..+|.++...|++++|+..|++++..+|++..++..++.++...|++++|+..++
T Consensus 96 ~~~l~~~l~~~P~~~~a-------~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 96 LQVVNKLLAVNVCQPED-------VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHhCCCChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999887 67788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 216 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
+++...|+++..+..++ .+...|++++|+..+++++...|...... ...++..+...|++++|+..++++++.
T Consensus 169 ~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~------~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 169 TQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES------AGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH------HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999998887765 48889999999999999998876432211 122344556678999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 006937 296 NWHYADAMYNLGVAYGEMLKFDM----AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (625)
Q Consensus 296 ~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (625)
+|+++.++..+|.++...|++++ |+..|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.++
T Consensus 242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999986 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|++.....
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~ 390 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSF 390 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhH
Confidence 999999999999999999999999999999888888899999999999999999999999999764433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=247.30 Aligned_cols=382 Identities=17% Similarity=0.166 Sum_probs=317.0
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
+..+-.+|+.++..|+|++||++|.++++..|+.+..+.+++-||...|++++.++...++++++|+...+++..+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH--------------------------------------------
Q 006937 128 DEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTD-------------------------------------------- 162 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~-------------------------------------------- 162 (625)
..|++++|+....-..-.. -++.......-+++..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 9999999876543221100 0000000000000000
Q ss_pred -----h--HHHHHHh---CChHHHHHHHHHHHhhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 163 -----L--GTSLKLA---GNTQDGIQKYYEALKID----PHY---------APAYYNLGVVYSELMQYDTALGCYEKAAL 219 (625)
Q Consensus 163 -----l--~~~~~~~---~~~~~A~~~~~~~l~~~----~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 219 (625)
+ +.-.... ..|.+|...+.+..... ..+ +.++...|..++-.|++-.|.+.|+++++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0 0011111 24555555555443321 112 56788888999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC
Q 006937 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299 (625)
Q Consensus 220 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 299 (625)
++|.+...|..++.+|...++.++....|.++.+++|.+++.++..+.+++-+ +++++|+.-|++++.++|++
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL-------~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL-------QQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH-------HHHHHHHHHHHHHhhcChhh
Confidence 99999999999999999999999999999999999999998777766666654 69999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CHHHHHH
Q 006937 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSLNN 373 (625)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~ 373 (625)
.-++..++.+.+++++++++...|+.+.+..|..++++...|.++..++++++|++.|.+++++.|. ++..+..
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 5555555
Q ss_pred HHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 374 LGVVYT-VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 374 la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
.|.+.. -.+++..|+.+++++++++|....++..||.+..++|+.++|+++|++++.+.-...
T Consensus 508 Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 508 KALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred hhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 554433 458999999999999999999999999999999999999999999999998765433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=280.73 Aligned_cols=410 Identities=14% Similarity=0.090 Sum_probs=340.7
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+.+....-....++...|++++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|.++.++..++.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35566677778888999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (625)
++...|++++|+..++++++..|++.. + ..+|.++...|++++|+..++++++..|++..++..++.++...
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~-------~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-L-------LALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-H-------HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999866 3 44577777889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 006937 205 MQYDTALGCYEKAALERPMYA-----EAYCNMGVIYK-----NRGDL---ESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (625)
+..++|+..++++.. .|... .....+..+.. ..+++ ++|+..++.+++..|.++........+...
T Consensus 164 ~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 164 RLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 999999999987775 44321 11222222222 22334 789999999997766555443333333333
Q ss_pred -hchhhhhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHH
Q 006937 272 -LGTKVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYK 345 (625)
Q Consensus 272 -l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~ 345 (625)
++ .+...+++++|+..|+++++..+..+ .+...+|.++...|++++|+..|+++++.+|.+ ......++.++.
T Consensus 243 ~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 33 23456899999999999998865432 344457999999999999999999999988765 456778888899
Q ss_pred HcCCHHHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006937 346 DRDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (625)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (625)
..|++++|+..++++....|. ...++..++.++...|++++|++.+++++...|++..++..+|.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999988763 23577899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHHHHHHH
Q 006937 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466 (625)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (625)
++...|++++|++.++++++++|++..+.... ++.++..++.+++....++...
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~--a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQ--AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH--HHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999877664 4566677776666655555444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=263.36 Aligned_cols=331 Identities=22% Similarity=0.270 Sum_probs=262.2
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
+.++-.++..|.+.+..|+|..|+.+|++++..+|.. ++....+|.|+.++|+.+.|+..|+++++++|.+..++..||
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 4567788999999999999999999999999999974 578889999999999999999999999999999888888888
Q ss_pred HHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHH------------------------------HHHHHhHHHHHHh
Q 006937 124 ILYKDEG---RLVEAAESYHKALSADPSYKPAAECLA------------------------------IVLTDLGTSLKLA 170 (625)
Q Consensus 124 ~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~a------------------------------~~~~~l~~~~~~~ 170 (625)
.+-.... .+..++..+.++...++.++.+...++ ..++.+|.++..+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 7766554 356778888888888887776644443 3467789999999
Q ss_pred CChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHH
Q 006937 171 GNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG----DLESAI 245 (625)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~ 245 (625)
|++++|..+|.++++.++++ .-.++.+|..|...|+++.|..+|++.++..|++.++...+|.+|...+ ..+.|.
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 99999999999999999988 7788999999999999999999999999999999999999999998876 678889
Q ss_pred HHHHHHHhcCCCcHHHHhhHHHHH-------------------------------HHhchhhhhcCCHHHHHHHHHHHHh
Q 006937 246 ACYERCLAVSPNFEIAKNNMAIAL-------------------------------TDLGTKVKLEGDINQGVAYYKKALY 294 (625)
Q Consensus 246 ~~~~~al~~~~~~~~~~~~~~~~~-------------------------------~~l~~~~~~~~~~~~A~~~~~~~l~ 294 (625)
.++.++++..|.+..++..++.++ .++|..++..|++.+|...|.+++.
T Consensus 401 ~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 401 NVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 999999999888888877776654 2345556677888888888888776
Q ss_pred h-----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006937 295 Y-----NWHY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (625)
Q Consensus 295 ~-----~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (625)
. +++. ....+++|.++...++++.|.+.|..+++.+|....++..+|......++..+|..+++.++..+
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 5 1111 23467788888888777777777777777777666666666655555555555555555555555
Q ss_pred CCCHHHHHHHH
Q 006937 365 PNFSQSLNNLG 375 (625)
Q Consensus 365 ~~~~~~~~~la 375 (625)
..++.++..+|
T Consensus 561 ~~np~arsl~G 571 (1018)
T KOG2002|consen 561 SSNPNARSLLG 571 (1018)
T ss_pred cCCcHHHHHHH
Confidence 44444444433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=283.27 Aligned_cols=380 Identities=15% Similarity=0.086 Sum_probs=321.4
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
.+..+..+..+|..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..++++++..|+++. +..+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 34567779999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH-----HHHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYNLG 198 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la 198 (625)
.++...|++++|+..++++++..|++... +..++.++...+..++|+..++++.. .|... .....+.
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~-------~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~ 195 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQY-------PTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELV 195 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887 55567777788999999999987775 54421 1122222
Q ss_pred HHHH-----HcCCH---HHHHHHHHHHHHhCCCCHHH-------HHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 199 VVYS-----ELMQY---DTALGCYEKAALERPMYAEA-------YCN-MGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (625)
Q Consensus 199 ~~~~-----~~~~~---~~A~~~~~~al~~~~~~~~~-------~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (625)
.+.. ..+++ ++|+..++++++..|.++.. ... ++ .+...|++++|+..|+++++..+..+..
T Consensus 196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~- 273 (765)
T PRK10049 196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPW- 273 (765)
T ss_pred HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHH-
Confidence 2222 22345 78999999999764433322 222 33 3467799999999999999886443321
Q ss_pred hhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------
Q 006937 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------ 332 (625)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------ 332 (625)
....++.++...|++++|+..|+++++.+|.+ ......++.++...|++++|+..++++....|.
T Consensus 274 -----a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~ 348 (765)
T PRK10049 274 -----AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYG 348 (765)
T ss_pred -----HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecC
Confidence 11113556666889999999999999888765 456777888899999999999999999998763
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 006937 333 ---------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 333 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
...++..+|.++...|++++|++.+++++...|.+..++..+|.++...|++++|++.+++++.++|++..
T Consensus 349 ~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 349 SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 24577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
+++.+|.++...|++++|...++++++..|+++.+.
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999998664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-29 Score=272.53 Aligned_cols=389 Identities=14% Similarity=0.061 Sum_probs=306.5
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
..+.+..++..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|++...+..++
T Consensus 40 ~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La 119 (987)
T PRK09782 40 RHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLA 119 (987)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------------------------------HHHhHHHHHHh
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV---------------------------------LTDLGTSLKLA 170 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~---------------------------------~~~l~~~~~~~ 170 (625)
.+ +++++|+..|+++++.+|++.++...++.+ ...++.+|..+
T Consensus 120 ~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 120 AI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred Hh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHH
Confidence 76 999999999999999999999888777765 12236778888
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHH-------------------------------HHHcCCHHHHHH-------
Q 006937 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVV-------------------------------YSELMQYDTALG------- 212 (625)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~-------------------------------~~~~~~~~~A~~------- 212 (625)
+++++|+..+.++++..|.+......++.+ |...|+.++|.+
T Consensus 196 ~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 196 KQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 999989888888777655543333322222 222333333332
Q ss_pred --------------------------------------------------------------------------------
Q 006937 213 -------------------------------------------------------------------------------- 212 (625)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (625)
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT 355 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcccc
Confidence
Q ss_pred ------------------------------------------HHHHHHH-------------------------------
Q 006937 213 ------------------------------------------CYEKAAL------------------------------- 219 (625)
Q Consensus 213 ------------------------------------------~~~~al~------------------------------- 219 (625)
.|+++..
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 2222110
Q ss_pred ----------------------------------hCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHh
Q 006937 220 ----------------------------------ERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (625)
Q Consensus 220 ----------------------------------~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 263 (625)
..|. ++.+++++|.++.. ++..+|+..+.+++...|+... ..
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-~L 513 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-HR 513 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-HH
Confidence 1133 55677888888887 7888899888888888887532 22
Q ss_pred hHHHHH--------------------------HHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH
Q 006937 264 NMAIAL--------------------------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 317 (625)
Q Consensus 264 ~~~~~~--------------------------~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 317 (625)
.++.++ ..+|.++...|++++|+.+++++++..|.....+..++......|+++
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHH
Confidence 222221 223444566778888888888888888877777777776667778888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 318 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
+|+..|+++++.+|+ ..++.++|.++.+.|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++.
T Consensus 594 eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 594 LALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888888888886 8888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 398 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
+|+++.+++++|.++..+|++++|+.+|+++++++|++....
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 888888888888888888888888888888888888876554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=258.45 Aligned_cols=395 Identities=19% Similarity=0.249 Sum_probs=345.2
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
...++.++.+|+.+..+|+|++|..+|.++++.+|++ .-.++.+|..++..|+++.|+.+|+++++..|++.+....+|
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3567789999999999999999999999999999988 788999999999999999999999999999999999999999
Q ss_pred HHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHH-------------------------------HHHhHHHHH
Q 006937 124 ILYKDEG----RLVEAAESYHKALSADPSYKPAAECLAIV-------------------------------LTDLGTSLK 168 (625)
Q Consensus 124 ~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~a~~-------------------------------~~~l~~~~~ 168 (625)
.+|...+ ..+.|..+..++++..|.+..++..++.+ +.++|..++
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 9998876 67889999999999999998888777764 345788888
Q ss_pred HhCChHHHHHHHHHHHhh-----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 006937 169 LAGNTQDGIQKYYEALKI-----DPH-----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (625)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~-----~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 238 (625)
..|++.+|...|.+++.. +++ +....+++|.++...++++.|.+.|..+++.+|...+++..+|.+....
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence 999999999999998876 222 2345889999999999999999999999999999999999999888888
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHh----
Q 006937 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGE---- 312 (625)
Q Consensus 239 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~---- 312 (625)
++..+|...++.++..+..++.++..++..+ .....+..|.+-|+..++... .++.+...||+++++
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~-------l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLH-------LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHH-------HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 9999999999999999998887766555444 445677777776666654422 456778888887764
Q ss_pred --------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCH
Q 006937 313 --------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (625)
Q Consensus 313 --------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (625)
.+.+++|++.|.++++.+|.|..+-+.+|.++...|++.+|+..|.++.+--.++..+|.++|.||..+|+|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 345889999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHh
Q 006937 385 DAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446 (625)
Q Consensus 385 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 446 (625)
-.|++.|+.+++.. .++.+++..||.++...|++.+|.+...+++.+.|.++....|+.+.+
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 99999999999874 366899999999999999999999999999999999999988876543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-29 Score=234.91 Aligned_cols=390 Identities=21% Similarity=0.226 Sum_probs=334.4
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (625)
..+...|+..+..|+|+.|+.+|..++.++|.|...+.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..+..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH---------HHHH-hCC-------hHHHHHHHHHHHhh-----
Q 006937 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT---------SLKL-AGN-------TQDGIQKYYEALKI----- 186 (625)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~---------~~~~-~~~-------~~~A~~~~~~~l~~----- 186 (625)
.|+|++|+..|.+.++.+|++......++.+...... .+.. .++ .+.+.....+.+..
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999999999999998887776665521100 0000 000 00011111111111
Q ss_pred ------------------------------------CCC---------------------CHHHHHHHHHHHHHcCCHHH
Q 006937 187 ------------------------------------DPH---------------------YAPAYYNLGVVYSELMQYDT 209 (625)
Q Consensus 187 ------------------------------------~~~---------------------~~~~~~~la~~~~~~~~~~~ 209 (625)
.|. .......+|...++..++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 110 02345678999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHH
Q 006937 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (625)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (625)
|++.|.+++.++ .+...+.+.+.+|...|.+.+.+.....+++...........++.++..+|..+...++++.++.+|
T Consensus 243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 999999999999 8889999999999999999999999999998888777777788999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 006937 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (625)
Q Consensus 290 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 369 (625)
++++..... ..+.......++++...+...-++|.-..--...|..++..|+|..|+..|.++++.+|+++.
T Consensus 322 ~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 322 QKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 998876554 556667777888888888888889988888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhh
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 447 (625)
.|.+.|.||.++|++..|+...+.+++++|+...+|..-|.++..+.+|++|.+.|.++++.+|++.++.....-+..
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988777544443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-27 Score=250.33 Aligned_cols=361 Identities=13% Similarity=0.048 Sum_probs=309.3
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCC---
Q 006937 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGR--- 131 (625)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~--- 131 (625)
....+++.+|...++...+..|.+...+..++......|++++|...|+++....++. ......++.+|...+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 3455788888888888888889999999999999999999999999999998863321 2234467777766544
Q ss_pred ----------------------HHH---HHHHHHHHHhcCCC--CHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 006937 132 ----------------------LVE---AAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (625)
Q Consensus 132 ----------------------~~~---A~~~~~~al~~~~~--~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (625)
+.+ +...+.+++...|. +... +..+|.++.. ++..+|+..+.+++
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a-------~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA-------WNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH-------HHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 222 23334444455555 5444 7778888776 89999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh
Q 006937 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (625)
Q Consensus 185 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 264 (625)
...|++. ....+|.++...|++++|+..+++++...|.. ..+..+|.++...|++++|+.+++++++..|........
T Consensus 504 ~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~ 581 (987)
T PRK09782 504 QRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW 581 (987)
T ss_pred HhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH
Confidence 9999854 46677888889999999999999988776654 557899999999999999999999999999887543332
Q ss_pred HHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 006937 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344 (625)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 344 (625)
++......|++++|+..++++++.+|+ ..++..+|.++.+.|++++|+..|++++..+|+++.++.++|.++
T Consensus 582 -------La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 582 -------LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred -------HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 233333458999999999999999996 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (625)
Q Consensus 345 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (625)
...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|++..+....|.+.....+++.|.+.
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCh
Q 006937 425 YEQCLKIDPDSR 436 (625)
Q Consensus 425 ~~~al~~~p~~~ 436 (625)
+++...++|+..
T Consensus 734 ~~r~~~~~~~~~ 745 (987)
T PRK09782 734 VGRRWTFSFDSS 745 (987)
T ss_pred HHHHhhcCccch
Confidence 999999999977
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-27 Score=217.71 Aligned_cols=361 Identities=20% Similarity=0.203 Sum_probs=288.6
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006937 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (625)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 162 (625)
..+-..|.-++..|+|++|+++|.+++++.|+.+..+.+++-||...|++++.++...++++++|+...+ ++.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA-------l~R 188 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA-------LLR 188 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH-------HHH
Confidence 3456678889999999999999999999999999999999999999999999999999999999998877 666
Q ss_pred hHHHHHHhCChHHHHHHHH------------------HHHhh--------------CCCCH-------------------
Q 006937 163 LGTSLKLAGNTQDGIQKYY------------------EALKI--------------DPHYA------------------- 191 (625)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~------------------~~l~~--------------~~~~~------------------- 191 (625)
.+..+...|++.+|+.-.. +.++. .|.-+
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 6666666677777664331 11111 11110
Q ss_pred --------HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHH
Q 006937 192 --------PAYYNLGVVYSELM---QYDTALGCYEKAALER----PMY---------AEAYCNMGVIYKNRGDLESAIAC 247 (625)
Q Consensus 192 --------~~~~~la~~~~~~~---~~~~A~~~~~~al~~~----~~~---------~~~~~~la~~~~~~g~~~~A~~~ 247 (625)
+.-..-+.-+...+ .|.+|...+.+..... ..+ ..++...|..++-.|++..|...
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 00011111111122 4566666655543321 112 56778888889999999999999
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006937 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (625)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 327 (625)
|+.++.++|.+... |..++..|....+.++....|.++..++|+++++|+..|.+++-++++++|+.-|++++
T Consensus 349 ~~~~I~l~~~~~~l-------yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 349 FDAAIKLDPAFNSL-------YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred HHHHHhcCcccchH-------HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987754 55555566667899999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------c
Q 006937 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------Y 401 (625)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 401 (625)
.++|++...+..++.+.+++++++++...|+.+.+..|+.++++...|.++..++++++|++.|++++++.|. +
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHH
Q 006937 402 AEAYNNLGVLY-RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 459 (625)
Q Consensus 402 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (625)
+..+.+.|.+. .-.+++..|+..+++|++++|....+...+ +..-+..++.+++++
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl--aq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL--AQFELQRGKIDEAIE 558 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH--HHHHHHHhhHHHHHH
Confidence 55555444433 235899999999999999999998888764 333344555544443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-28 Score=234.44 Aligned_cols=306 Identities=20% Similarity=0.282 Sum_probs=276.4
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 006937 118 AHTHCGILYK--DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (625)
Q Consensus 118 ~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (625)
.+..+|..|. .+-+..+|+..|++.-...++.. .++..+|..|+.+++|++|.++|+.+-+..|-.....-
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~-------wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~me 391 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTG-------WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGME 391 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchh
Confidence 4555555554 34567899999999555555543 34888999999999999999999999999998877777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchh
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~ 275 (625)
.+..+++.+.+--+---+.+..++.+|+.|+.|..+|.+|..+++++.|+++|++++.++|.+.. +|..+|.-
T Consensus 392 iyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY-------ayTLlGhE 464 (638)
T KOG1126|consen 392 IYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY-------AYTLLGHE 464 (638)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch-------hhhhcCCh
Confidence 77788888877666666667788999999999999999999999999999999999999998643 55666777
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355 (625)
Q Consensus 276 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 355 (625)
+.....++.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.
T Consensus 465 ~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 465 SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHH
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
+|++|+.++|.++-..+..|.++..++++++|+..+++.-++.|+...+++.+|.+|.++|+.+.|+..|.-|+.++|.-
T Consensus 545 ~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hh
Q 006937 436 RN 437 (625)
Q Consensus 436 ~~ 437 (625)
.+
T Consensus 625 ~~ 626 (638)
T KOG1126|consen 625 AQ 626 (638)
T ss_pred ch
Confidence 65
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=218.74 Aligned_cols=389 Identities=21% Similarity=0.237 Sum_probs=330.2
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHH------HhcCCCc----
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA------VKLDPQN---- 115 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~---- 115 (625)
.++...+.+|++++-.|+|..|....+.- +.+..+....+..+.|+....++++|+..+... +..+|.+
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 67888899999999999999998888775 556677888999999999999999999888732 1111211
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------------------
Q 006937 116 ---------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV--------------------- 159 (625)
Q Consensus 116 ---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~--------------------- 159 (625)
....+..|.+|....+.++|...|.+++..++.+.++...+...
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~ 205 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT 205 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence 23456778889999999999999999998877765543322211
Q ss_pred -----------------------------------------HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 160 -----------------------------------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (625)
Q Consensus 160 -----------------------------------------~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (625)
+...+..++..+++.+..+..+..++.+|-+...+...-
T Consensus 206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i 285 (611)
T KOG1173|consen 206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI 285 (611)
T ss_pred hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence 112345667778888888888888888888877765555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh
Q 006937 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
.++.+.|+..+-...-.+.++..|+.+-.|+..|..|...|++.+|..+|.++..++|....+|...+..+..
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~------- 358 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG------- 358 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-------
Confidence 5888888888888888888899999999999999999999999999999999999999988877766666555
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
.+..++|+..|..+-++.|........+|.-|...++++.|.++|.+++.+.|.++-++..+|.+.+..+.|.+|..+|+
T Consensus 359 e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 67999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCC----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 359 MALSIKP----N---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 359 ~al~~~~----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
+++..-+ . -...+.++|.++.+++.+++|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.++|-+
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9994321 1 23478999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhH
Q 006937 432 DPDSRNAGQNR 442 (625)
Q Consensus 432 ~p~~~~~~~~~ 442 (625)
.|++..+..-+
T Consensus 519 ~p~n~~~~~lL 529 (611)
T KOG1173|consen 519 KPDNIFISELL 529 (611)
T ss_pred CCccHHHHHHH
Confidence 99997665443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-25 Score=232.44 Aligned_cols=392 Identities=13% Similarity=0.012 Sum_probs=274.1
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
.+..++..+..+...++.|++..|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|.....+..+|
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 34567789999999999999999999999999999999755558888889999999999999999944444555555568
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (625)
.++...|++++|++.|+++++.+|+++.. +..++..+...++.++|++.++++...+|..... ..++.++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~-------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~ 181 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDL-------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA 181 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh
Confidence 89999999999999999999999999876 4566778888899999999999999999986554 566667766
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------------------
Q 006937 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER--------------------------------- 250 (625)
Q Consensus 204 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------------------------- 250 (625)
.++..+|++.++++++.+|++.+++..+..++...|-...|.+...+
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 78887899999999999999999988888888777766655554442
Q ss_pred ---------------HHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcC
Q 006937 251 ---------------CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEML 314 (625)
Q Consensus 251 ---------------al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~ 314 (625)
.+...+..+........+....-..+...+++.+++..|+...... +--..+....|..|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 2221111111111111111122222334556666666666655433 222345556666666666
Q ss_pred CHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---------------CCHHHHHH
Q 006937 315 KFDMAIVFYELAFHFNP------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---------------NFSQSLNN 373 (625)
Q Consensus 315 ~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---------------~~~~~~~~ 373 (625)
++++|+.+|++++.-.+ ........|...+...+++++|..++++..+..| +..+....
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 66666666666665432 2233345566666666666666666666665322 22345555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 006937 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (625)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (625)
++.++...|++.+|++.+++.+...|.+..++..+|.++...|++.+|...++.+..++|++..+.....
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-25 Score=207.67 Aligned_cols=361 Identities=17% Similarity=0.161 Sum_probs=189.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--QNACAHTHCGILYKD 128 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~ 128 (625)
++..|.++.+.|....|++.|..++...|-+..+|..++.+.... +........-| .+.-.-..++.++..
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 334444444555555555555555444454444444444432211 11111111112 122222333444444
Q ss_pred cCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 006937 129 EGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (625)
Q Consensus 129 ~g~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 207 (625)
..+.++++.-++..... .|.+... -...|.+.+.+.++++|+..|+.+.+.+|-..+-.-...++++-.++-
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i-------~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYI-------KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 44555555555555544 3433322 223344444455566666666665555555544444445544444443
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHH
Q 006937 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (625)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (625)
.+-.-+.+.+.+++.-.++....+|+.|...++.++|+.+|+++++++|....+|..++.-|.. .++...|++
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-------mKNt~AAi~ 385 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-------MKNTHAAIE 385 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-------hcccHHHHH
Confidence 4433344444455555555555566666666666666666666666666554444433333333 345566666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 006937 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (625)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 367 (625)
.|+++++++|.+-.+|+.+|+.|.-++-..=|+-+|+++....|.+...|..||.+|.+.++.++|+++|.+++.....+
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666665555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
..++..+|.+|.++++.++|..+|++.++ ..|+...+...|+.-+.+.+++++|..+..+++.-+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 56666666666666666666666666655 233334455556666666666666666555555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=228.58 Aligned_cols=296 Identities=19% Similarity=0.223 Sum_probs=153.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006937 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (625)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (625)
.....-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-+..|-..+..-.+..++....+--+--
T Consensus 328 ~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls 407 (638)
T KOG1126|consen 328 RSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS 407 (638)
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH
Confidence 33344445555555555444444545555555555555555555555555555555544443333344444443333222
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (625)
Q Consensus 137 ~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 216 (625)
.+.+..+..+|..++. |..+|.++..+++++.|+++|+++++++|....+|..+|.-+.....++.|..+|++
T Consensus 408 ~Laq~Li~~~~~sPes-------Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPES-------WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHHhhCCCCcHH-------HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 3333444444444444 444455555555555555555555555555555555555555555555555555555
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC
Q 006937 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296 (625)
Q Consensus 217 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 296 (625)
++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP---------------------------------------- 520 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP---------------------------------------- 520 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc----------------------------------------
Confidence 5555555555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 006937 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (625)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (625)
.+......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++...+++++|+..+++..++.|+...++..+|.
T Consensus 521 -~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgk 599 (638)
T KOG1126|consen 521 -SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGK 599 (638)
T ss_pred -cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 377 VYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
+|.+.|+.+.|+..|.-|..++|.
T Consensus 600 i~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 600 IYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHccchHHHHhhHHHhcCCCc
Confidence 555555555555555555555554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-25 Score=223.03 Aligned_cols=376 Identities=15% Similarity=0.126 Sum_probs=306.9
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
.....++..|+.++..|++++|..++.++++++|.++.+|+.+|.+|..+|+.+++...+-.|-.++|.+.+.|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVV 200 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~ 200 (625)
..++|++.+|.-+|.++++.+|.+... ....+.++.+.|+...|...|.+++...|.. .......+..
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~-------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWEL-------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHH-------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999776 6677788888899999999999999999832 2233455778
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcH-----------------
Q 006937 201 YSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFE----------------- 259 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~----------------- 259 (625)
+...++-+.|++.++.++.... ...+.+..++.++.....++.|.......... .+++.
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 8888888999999999998432 34456778899999999999998887765541 11111
Q ss_pred ---HHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CH
Q 006937 260 ---IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CA 334 (625)
Q Consensus 260 ---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~ 334 (625)
.....+-.+...++.+.....+..+++..+..--...+ +.++.+..++.++...|++.+|+.++..+....+. +.
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 11111222455555556666677777666554433334 35778999999999999999999999998887654 47
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHH
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------AEAY 405 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~ 405 (625)
.+|+.+|.+|..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.+++...-++.+ ....
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999998876444222 3467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~a 428 (625)
.....++...|+.++=+..-...
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 78888999999988855444333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-25 Score=203.01 Aligned_cols=374 Identities=19% Similarity=0.185 Sum_probs=272.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHH-------------------HHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR-------------------LAFDSFSE 107 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-------------------~A~~~~~~ 107 (625)
.....+.+|..++..+.|+.|.-.++.... ....+..-.+.+..|..+ ..+..+.+
T Consensus 77 ~~~~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~ 151 (559)
T KOG1155|consen 77 LEKDIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNK 151 (559)
T ss_pred hhcchhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhh
Confidence 345677899999999999999988887644 222222222222222211 11222222
Q ss_pred HHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------------------
Q 006937 108 AVKL----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD--------------------- 162 (625)
Q Consensus 108 al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~--------------------- 162 (625)
-++. ...++..++..|.++.+.|....|+..+..++...|-+-.+|..+..+...
T Consensus 152 ~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 152 PLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKF 231 (559)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHH
Confidence 2221 234567888999999999999999999999999999988887665543211
Q ss_pred -hHHHHHHhCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006937 163 -LGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (625)
Q Consensus 163 -l~~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 240 (625)
++.++......++++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|-..+-.-....++.-.++
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 223333334445555555554444 455555555555555555555555555555555555444444444444444333
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006937 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (625)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 320 (625)
-.+-.-.-+.+..++.-.++. ..-+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+
T Consensus 312 ~skLs~LA~~v~~idKyR~ET-------CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPET-------CCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hHHHHHHHHHHHHhccCCccc-------eeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH
Confidence 333323333333333322221 2234566666889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 321 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
+.|++|++++|.+-.+|+.+|..|.-++...=|+-+|++|++..|+++..|..||.||.++++.++|+++|.+++.....
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
+..++..||.+|.++++..+|..+|++.++..
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999843
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-25 Score=197.72 Aligned_cols=324 Identities=19% Similarity=0.222 Sum_probs=242.4
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
.+.+++..+++|..++..|++.+|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHH-----HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPA---AECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~a~-----~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (625)
.+++++|++++|...|++++..+|++... ...++. .+......+...|+...|++.....+++.|-++..+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 99999999999999999999999965433 222222 2334455667789999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHH---H--H
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA---L--T 270 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~--~ 270 (625)
..+.||...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+..+-.+ - .
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999976433211110 0 0
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (625)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 346 (625)
.-+......+++.++++..++.++.+|..+. ....+..++...+++.+|++.+.+++.++|++..++...|..|+.
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 0011122234444444444444444444221 222333444444444444444444444444444444444444444
Q ss_pred cCCHHHHHHHHHHHHccCCCC
Q 006937 347 RDNLDKAVECYQMALSIKPNF 367 (625)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~ 367 (625)
...|+.|+..|++|.+.++++
T Consensus 354 dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hHHHHHHHHHHHHHHhcCccc
Confidence 444444444444444444444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-25 Score=223.14 Aligned_cols=308 Identities=20% Similarity=0.176 Sum_probs=195.5
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006937 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (625)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 162 (625)
...+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+..... .
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~------ 106 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---R------ 106 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH---H------
Confidence 3444556666666666666666666666666666666666666666666666666666655532211110 1
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 006937 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (625)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 242 (625)
..++..+|.+|...|++++|+..|+++++..|.+..++..++.++...|+++
T Consensus 107 ----------------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 158 (389)
T PRK11788 107 ----------------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQ 158 (389)
T ss_pred ----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHH
Confidence 1234555566666666666666666666555555556666666666666666
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006937 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (625)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (625)
+|++.++++++..|.+... ..+..+..++..+...+++++|+..++++++..|+...++..+|.++...|++++|+..
T Consensus 159 ~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 159 KAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666555443211 12223444555555566666666666666666666777777788888888888888888
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 006937 323 YELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (625)
Q Consensus 323 ~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (625)
+++++..+|.+ ..++..++.++...|++++|+..++++++..|+... +..++.++...|++++|+..++++++..|++
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 88888777765 456677788888888888888888888887776644 3777888888888888888888888888877
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Q 006937 402 AEAYNNLGVLYRD--AGSISLAIDAYEQCLK 430 (625)
Q Consensus 402 ~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 430 (625)
......++..+.. .|+..+|+..+++.++
T Consensus 316 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 316 RGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 6555444433322 4467777766665553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-26 Score=208.17 Aligned_cols=377 Identities=17% Similarity=0.187 Sum_probs=218.9
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC-----cHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-----NACAHT 120 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~ 120 (625)
-..++.+|..|....-+.+|+..|+-+++ ..|+......++|.++++..+|.+|+++|+-++..-|. ...++.
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 45677788888888888888888887765 35666677778888888888888888888888887764 245677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh--------------
Q 006937 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------------- 186 (625)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-------------- 186 (625)
++|..+.+.|+|+.|+..|+.+++..|+.... +++..+++..|+-++-.+.|.+.+.+
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~pn~~a~--------~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA--------LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhCccHHhh--------hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 77888888888888888888888888875543 33444555556666666666666544
Q ss_pred CCCC--------------------------------------------------------------HHHHHHHHHHHHHc
Q 006937 187 DPHY--------------------------------------------------------------APAYYNLGVVYSEL 204 (625)
Q Consensus 187 ~~~~--------------------------------------------------------------~~~~~~la~~~~~~ 204 (625)
+|++ .+.-.+.+..+.+.
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 1111 01112223334444
Q ss_pred CCHHHHHHHHHH-------------------------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 205 MQYDTALGCYEK-------------------------------------AALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (625)
Q Consensus 205 ~~~~~A~~~~~~-------------------------------------al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 247 (625)
|+++.|++.++- ++.++.-++.++.+.|.+.+..|++++|.+.
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHH
Confidence 455444444432 2223333334444444444444555555555
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006937 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (625)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 327 (625)
|++++..+..- ..+++++|..+...|+.++|+++|-+...+--++.++++.++.+|..+.+..+|++++.++.
T Consensus 513 ykeal~ndasc-------~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 513 YKEALNNDASC-------TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHcCchHH-------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 55554433221 23444555555555555555555555554444555555555555555555555555555555
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006937 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (625)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (625)
.+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+...+||..|....-+++|+.+|+++--+.|+.......
T Consensus 586 slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 586 SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
++.|+.+.|+|.+|.+.|+..-...|++.+..
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 55555555555555555555555555554443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-25 Score=220.28 Aligned_cols=302 Identities=16% Similarity=0.128 Sum_probs=228.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc----HHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTHC 122 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 122 (625)
.....+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 445567789999999999999999999999999999999999999999999999999999998854332 3567889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH-----HHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYNL 197 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~l 197 (625)
|.++...|++++|+..|+++++..|.+... +..++.++...|++++|++.++++++..|.+. ..+..+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGA-------LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHH-------HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 999999999999999999999887776554 66778888888999999999999988877642 345678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhh
Q 006937 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (625)
Q Consensus 198 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (625)
|.++...|++++|+..++++++..|+...++..+|.++...|++++|++.+++++...|.+.
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------------------ 248 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL------------------ 248 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH------------------
Confidence 88888899999999999999988888888888899999999999999998888887766432
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (625)
..++..++.++...|++++|+..++++++..|+... +..++.++...|++++|+..+
T Consensus 249 ----------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 249 ----------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHH
Confidence 122344455555666666666666666666655433 356666666666666666666
Q ss_pred HHHHccCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 006937 358 QMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIA 396 (625)
Q Consensus 358 ~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 396 (625)
+++++..|++......++..+.. .|+..+|+..+++.++
T Consensus 306 ~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 306 REQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 66666666655443333332221 3455566555555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=199.74 Aligned_cols=369 Identities=19% Similarity=0.189 Sum_probs=304.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN-----VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
.-...|++++++.+|.+|+++|+-++..-|.- ..++.++|..+.+.|.|+.|+..|+.+.+..|+... -+++..
T Consensus 239 lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i 317 (840)
T KOG2003|consen 239 LKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLII 317 (840)
T ss_pred eeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhh
Confidence 34567888999999999999999999987752 457788999999999999999999999999997654 456778
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC--------------CCCHHHHHHH-------------HH-------------------
Q 006937 125 LYKDEGRLVEAAESYHKALSAD--------------PSYKPAAECL-------------AI------------------- 158 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~~-------------a~------------------- 158 (625)
|++..|+-++-.+.|.+.+.+- |++.-....+ +.
T Consensus 318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 8889999999999999988641 1110000000 00
Q ss_pred -----------------------HHHHhHHHHHHhCChHHHHHHHHHH--------------------------------
Q 006937 159 -----------------------VLTDLGTSLKLAGNTQDGIQKYYEA-------------------------------- 183 (625)
Q Consensus 159 -----------------------~~~~l~~~~~~~~~~~~A~~~~~~~-------------------------------- 183 (625)
+-.+.+..+.+.|+++.|++.+.-.
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 0112344567778888887776432
Q ss_pred -----HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 006937 184 -----LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (625)
Q Consensus 184 -----l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (625)
+..+.-++.++.+.|.+.+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+.-.+--++
T Consensus 478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 222333466667777788888999999999999999999999999999999999999999999999876554444
Q ss_pred HHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 006937 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338 (625)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 338 (625)
+.++..++.+|....+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+..-
T Consensus 558 -------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie 630 (840)
T KOG2003|consen 558 -------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE 630 (840)
T ss_pred -------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence 4566667777777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006937 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (625)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (625)
.||..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|.+|.+.|+..-...|++.+.+..|.++.-.+|-.
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888753
Q ss_pred HHHHHHHHH
Q 006937 419 SLAIDAYEQ 427 (625)
Q Consensus 419 ~~A~~~~~~ 427 (625)
+|.++-.+
T Consensus 711 -d~key~~k 718 (840)
T KOG2003|consen 711 -DAKEYADK 718 (840)
T ss_pred -hHHHHHHH
Confidence 34444333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-24 Score=190.60 Aligned_cols=328 Identities=16% Similarity=0.168 Sum_probs=238.8
Q ss_pred CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
+|.+++-.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|+..|+-..|+..+.+++++.|+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A----- 108 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA----- 108 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-----
Confidence 556778899999999999999999999999999999999999999999999999999999999999999997766
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH---HH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006937 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PA------------YYNLGVVYSELMQYDTALGCYEKAALERP 222 (625)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~------------~~~la~~~~~~~~~~~A~~~~~~al~~~~ 222 (625)
....|.++.++|.+++|..-|..+++.+|++. ++ +......+...|+...|++.....+++.|
T Consensus 109 --RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 109 --RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred --HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 56678888999999999999999999999642 22 23334456667999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHH
Q 006937 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302 (625)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 302 (625)
-++..+...+.+|...|+...|+.-++.+-++..++.+..+.++..++.+ |+.+.++...++.++++|++...
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v-------gd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV-------GDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh-------hhHHHHHHHHHHHHccCcchhhH
Confidence 99999999999999999999999999999999999988888888877776 48899999999999999987654
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH----HHHHHHHHH
Q 006937 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVY 378 (625)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~ 378 (625)
+-..- +..+..+.+...+ .....++|.++++..++.++.+|..+. ....+..|+
T Consensus 260 f~~YK----klkKv~K~les~e------------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 260 FPFYK----KLKKVVKSLESAE------------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHH----HHHHHHHHHHHHH------------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 32211 1111111111111 112234455555555555555544222 223344444
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
...|++.+|+..+.++++.+|++.+++...+.+|.....|+.|+..|++|.+.+|++..+...
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 455555555555555555555555555555555555555555555555555555555444433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-23 Score=216.52 Aligned_cols=374 Identities=13% Similarity=0.012 Sum_probs=304.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 006937 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (625)
..++..+...|+.++|+..+++++...|.....+..+|.++...|++++|++.|+++++.+|+++.++..++.++...++
T Consensus 72 ~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 72 DDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 36778888889999999999999944444555555568899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006937 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (625)
Q Consensus 132 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 211 (625)
.++|++.++++...+|..... ..++.++...++..+|++.++++++.+|++..++..+..++...|-...|.
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~--------l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNY--------MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HHHHHHHHHHhcccCcchHHH--------HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 999999999999999984432 223444444677777999999999999999998888877777766654444
Q ss_pred HHH------------------------------------------------HHHHHh---CCCC----HHHHHHHHHHHH
Q 006937 212 GCY------------------------------------------------EKAALE---RPMY----AEAYCNMGVIYK 236 (625)
Q Consensus 212 ~~~------------------------------------------------~~al~~---~~~~----~~~~~~la~~~~ 236 (625)
+.. ++.+.. .|.. ..+..-.-.++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 433 333332 2221 123334445677
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHH
Q 006937 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW------HYADAMYNLGVAY 310 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~ 310 (625)
..|++.+++..|+.+......-+ ..+....|..|...++.++|+.+|++++...+ ........|...+
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P------~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMP------DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCC------HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 78999999999998875442212 11233455556667899999999999987653 2334457888999
Q ss_pred HhcCCHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 006937 311 GEMLKFDMAIVFYELAFHFNP---------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375 (625)
Q Consensus 311 ~~~~~~~~A~~~~~~al~~~~---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 375 (625)
...+++++|..++++..+..| +..+....++.++...|++.+|++.+++.+...|.+..++..+|
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999998544 33677888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
.++...|.+.+|+..++.+..++|++..+...+|.++..+|++.+|.....++++..|+++...
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999998654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-23 Score=203.20 Aligned_cols=391 Identities=15% Similarity=0.136 Sum_probs=320.2
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCG 123 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 123 (625)
.++..+-.+...+...|+|+.+.+.|++++...-...+.|+.++.++...|.-..|+...+..+... |.++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3455555677788889999999999999998877788999999999999999999999999999988 77777776666
Q ss_pred HHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh-----------CChHHHHHHHHHHHhhCCCCH
Q 006937 124 ILY-KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYA 191 (625)
Q Consensus 124 ~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~-----------~~~~~A~~~~~~~l~~~~~~~ 191 (625)
.++ .+.+.+++++.+..+++.... .......+..+..+|.+|..+ ....++++.++++++.+|.++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~--~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLG--GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 554 567999999999999998542 222233455566666665432 235789999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 006937 192 PAYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (625)
Q Consensus 192 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (625)
.+.+.++.-|..+++.+.|+...+++++. ..+++.+|..++.++...+++.+|+...+.++...++|.........+-.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 99999999999999999999999999999 55679999999999999999999999999999988875322221111111
Q ss_pred Hh------------------------------------chhhhhcCCHHHHHHHHHHHHhh--------C-----C----
Q 006937 271 DL------------------------------------GTKVKLEGDINQGVAYYKKALYY--------N-----W---- 297 (625)
Q Consensus 271 ~l------------------------------------~~~~~~~~~~~~A~~~~~~~l~~--------~-----~---- 297 (625)
.+ +.......+..+|.+.++++... . |
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 10 11111222334444444433321 0 1
Q ss_pred ----CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 006937 298 ----HY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (625)
Q Consensus 298 ----~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 368 (625)
.. ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|+..+|.+.|..++.++|+++
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 11 235778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 369 QSLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
.+...+|.++.+.|+..-|.. .+..+++++|.+.++|+.+|.++.++|+.++|.++|..++++.+.+|.-
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 999999999999999888888 9999999999999999999999999999999999999999999988743
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-23 Score=198.16 Aligned_cols=403 Identities=17% Similarity=0.144 Sum_probs=315.7
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
.+.+....+-+-+..+.+|.-|+-+-+++..+. .++.-.+.+|++++..|++..|......- ++...+....+..+.+
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKC 91 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHH
Confidence 456677777778899999999999999998877 78888899999999999999998877654 6667788889999999
Q ss_pred HHHcCCHHHHHHHHHHH------HhcCCCC---------HH---HHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC
Q 006937 126 YKDEGRLVEAAESYHKA------LSADPSY---------KP---AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~a------l~~~~~~---------~~---~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 187 (625)
+....++++|...+... +...+.+ .. .....+.+++..|.+|....+.++|...|.+++..+
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 99999999999988733 1111211 11 112234456667888888899999999998887765
Q ss_pred CCCHHH---------------------------------------------------------------------HHHHH
Q 006937 188 PHYAPA---------------------------------------------------------------------YYNLG 198 (625)
Q Consensus 188 ~~~~~~---------------------------------------------------------------------~~~la 198 (625)
+...++ ....+
T Consensus 172 ~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~a 251 (611)
T KOG1173|consen 172 AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKA 251 (611)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHH
Confidence 554332 33334
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh
Q 006937 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
..++..+++.+..+..+..++.+|-+...+-....++...|+..+-...-.+.++..|+.+..|+..+..|..
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~------- 324 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM------- 324 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHH-------
Confidence 4445555555555555555555555544443333355555555555555555555566655555555544444
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
.+++.+|..+|.++..++|....+|...|..+...+..++|+..|..|-++.|........+|.-|...++++-|.++|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP----T---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 359 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
+|+.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+ + ....+.+||.++.+++++++|+.+|++++.+
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999995422 2 2456899999999999999999999999999
Q ss_pred CCCChhhhhhHHHHhhhccCCCchHHHH
Q 006937 432 DPDSRNAGQNRLLAMNYINEGHDDKLFE 459 (625)
Q Consensus 432 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (625)
.|.+..++.. ++..|...|+.+.+.+
T Consensus 485 ~~k~~~~~as--ig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 485 SPKDASTHAS--IGYIYHLLGNLDKAID 510 (611)
T ss_pred CCCchhHHHH--HHHHHHHhcChHHHHH
Confidence 9999998877 4555666666655544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-22 Score=190.37 Aligned_cols=380 Identities=13% Similarity=0.052 Sum_probs=316.0
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC---------------------------
Q 006937 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------------------------- 112 (625)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------- 112 (625)
+..-|+.|...++++-+.-|.+..+|..-+..-...|+.+.-.+++.+.+..-
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 44568888888888888888888888888888888887777666666655320
Q ss_pred ---------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHH
Q 006937 113 ---------------PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177 (625)
Q Consensus 113 ---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~ 177 (625)
.+....|..-+..+.+.+-++-|...|..+++.+|..... |...+..-..-|..++-.
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl-------Wlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL-------WLRAAMFEKSHGTRESLE 570 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH-------HHHHHHHHHhcCcHHHHH
Confidence 1112345555667777777888888888888888887665 444444445567888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (625)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 257 (625)
.++++++..-|.....|...+..+...|+...|...+.++++.+|++.++|+....+.....+++.|..+|.++....|.
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 88899998889888888888888999999999999999999999998888888888888889999999999998887765
Q ss_pred cHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 006937 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337 (625)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 337 (625)
. .+++.-..+...+++.++|+.+++++++.+|.....|..+|.++.++++.+.|...|...++..|..+..|
T Consensus 651 e--------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW 722 (913)
T KOG0495|consen 651 E--------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW 722 (913)
T ss_pred c--------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH
Confidence 3 34444445555578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------
Q 006937 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------------- 401 (625)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 401 (625)
..++.+-.+.|+.-+|...++++.-.+|++...|.....+-.+.|+.++|...+.++++..|.+
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999887753
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchH
Q 006937 402 --------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456 (625)
Q Consensus 402 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 456 (625)
+.++...|.++....++++|.++|.++++.+|++.++|..++ .-++..|..++
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy--kfel~hG~eed 869 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY--KFELRHGTEED 869 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH--HHHHHhCCHHH
Confidence 456778899999999999999999999999999999987743 23344554433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-22 Score=192.73 Aligned_cols=375 Identities=14% Similarity=0.056 Sum_probs=338.6
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
-..|+.-|+.+...+-++-|+.+|..+++..|.....|...+..-...|..++-..++++++...|.....|+..+..+.
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 207 (625)
..|+...|...+.++++.+|++.+. +...-.+.....+++.|..+|.++....|. ..+|+.-+.+...+++.
T Consensus 596 ~agdv~~ar~il~~af~~~pnseei-------wlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEI-------WLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNV 667 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHH-------HHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhH
Confidence 9999999999999999999998776 444455666778999999999999887665 67888889999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHH
Q 006937 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (625)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (625)
++|+++++++++..|.....|..+|+++.++++.+.|...|...++..|.....|..++ .+....|+.-.|..
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa-------kleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA-------KLEEKDGQLVRARS 740 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH-------HHHHHhcchhhHHH
Confidence 99999999999999999999999999999999999999999999999999887665544 44455679999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 006937 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (625)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 367 (625)
.++++.-.+|++...|.....+-.+.|+.+.|.....++++..|++...|..-..+.-.-++-.+++..++ ....+
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk----kce~d 816 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK----KCEHD 816 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH----hccCC
Confidence 99999999999999999999999999999999999999999999999988887777666666555555444 45678
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
+.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.-++-.+.|.++....|.+...|..
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999998877765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-22 Score=184.42 Aligned_cols=397 Identities=14% Similarity=0.094 Sum_probs=325.2
Q ss_pred CCCCCCCccccccccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q 006937 30 PGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109 (625)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (625)
++.+.......+...+.+.+.....+.++...++-+.|+..+.++.... ..+.....++..+-.-++-.++.-.+...+
T Consensus 79 ~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevv 157 (564)
T KOG1174|consen 79 HKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVI 157 (564)
T ss_pred ccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHH
Confidence 3333333444455566788999999999999999999999877754432 234555555665555554444444444333
Q ss_pred hc-------------------------------CCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 006937 110 KL-------------------------------DPQNACAH---THCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (625)
Q Consensus 110 ~~-------------------------------~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (625)
.. .|..+..+ ..++.++....-+..+..++-.-....|++...
T Consensus 158 recp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL--- 234 (564)
T KOG1174|consen 158 RECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL--- 234 (564)
T ss_pred HhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHH---
Confidence 32 22222222 233455544555556666666667777888765
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006937 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (625)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (625)
+..+|.+++..|++.+|+..|+++..++|......-..|.++...|++++-..+....+........-|+.-+...
T Consensus 235 ----l~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 235 ----MMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred ----HHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 7788999999999999999999999999999999999999999999999999999999998888888899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 006937 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (625)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 315 (625)
+..++++.|+.+-+++++.+|++...+...+.++.. .++.++|+-.|+.+..+.|...+.|..+..+|...|+
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-------~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA-------LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh-------ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 999999999999999999999988766655555555 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 316 FDMAIVFYELAFHFNPHCAEACNNLG-VIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (625)
Q Consensus 316 ~~~A~~~~~~al~~~~~~~~~~~~la-~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 393 (625)
+.+|...-+.+++..|.++..+..+| .++. .-.--++|.++++++++++|....+-..++.++...|.+++++..+++
T Consensus 384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99999999999999999999999997 4443 344568999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 394 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
.+...|+ ...+..||.++...+.+++|.++|..|+.++|++..+..++
T Consensus 464 ~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 464 HLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 9999887 66889999999999999999999999999999998776654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-22 Score=199.25 Aligned_cols=337 Identities=15% Similarity=0.130 Sum_probs=275.2
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006937 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (625)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 161 (625)
...++..|..++..|++++|...+.++++.+|.++.+|..+|.+|..+|+.+++...+-.|-.++|++.+. |.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~-------W~ 211 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL-------WK 211 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH-------HH
Confidence 45677788889999999999999999999999999999999999999999999999999999999999877 67
Q ss_pred HhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 006937 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYK 236 (625)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~ 236 (625)
.++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|+..|.+++...|.. .......+..+.
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 777788888999999999999999999999999999999999999999999999999999832 233445577888
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--cHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh--CCC--------------
Q 006937 237 NRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY--NWH-------------- 298 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~-------------- 298 (625)
..++-+.|++.++.++....+ ..+....++. ++.....++.+.......... .++
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ae-------l~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAE-------LFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHH-------HHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 888889999999999883222 1222223333 333355677776665554430 000
Q ss_pred ------------CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006937 299 ------------YADA-MYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (625)
Q Consensus 299 ------------~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (625)
+..+ ...++.+..+.++..+++..+..--...+ +.+..+..++..+...|++.+|+.+|..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1122 45555555666666666655544333334 458899999999999999999999999999876
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 365 PN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 365 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
+. +..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++..+|+.++|.+.+++...-+
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 54 467999999999999999999999999999999999999999999999999999999999887434
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-22 Score=191.40 Aligned_cols=363 Identities=19% Similarity=0.180 Sum_probs=297.1
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (625)
-.+-+...++...|+|++|++--.+.++++|..+..|..+|..+..+|+|++|+..|.+.|+.+|++...+..++.++..
T Consensus 37 vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~ 116 (539)
T KOG0548|consen 37 VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLE 116 (539)
T ss_pred chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhH
Confidence 34456777899999999999999999999999999999999999999999999999999999999999988888877632
Q ss_pred cC---------------------CHHHHHHHHHHHH---hcCCCCHHH--------------------------------
Q 006937 129 EG---------------------RLVEAAESYHKAL---SADPSYKPA-------------------------------- 152 (625)
Q Consensus 129 ~g---------------------~~~~A~~~~~~al---~~~~~~~~~-------------------------------- 152 (625)
.. ++-..-..|.+.+ ..+|.+...
T Consensus 117 ~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~ 196 (539)
T KOG0548|consen 117 DYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILAS 196 (539)
T ss_pred HHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCC
Confidence 20 0000111121111 111111000
Q ss_pred -----------------------HHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 006937 153 -----------------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (625)
Q Consensus 153 -----------------------~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~ 209 (625)
....+.-...+|...+...++..|++.|..++.++ .+...+.+.+.+|+..|.+.+
T Consensus 197 ~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~ 275 (539)
T KOG0548|consen 197 MAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAE 275 (539)
T ss_pred CCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHH
Confidence 11123335568999999999999999999999999 889999999999999999999
Q ss_pred HHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCH
Q 006937 210 ALGCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282 (625)
Q Consensus 210 A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (625)
++....++++..... ..+...+|..+...++++.|+.+|.+++..... ..+.......
T Consensus 276 c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~ 340 (539)
T KOG0548|consen 276 CIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEA 340 (539)
T ss_pred hhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHH
Confidence 999999988765442 233444677888889999999999998876544 1222224577
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006937 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (625)
Q Consensus 283 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (625)
++++...+...-.+|.-...-...|..++..|+|..|+..|.+++..+|+++..|.+.|.+|.++|.+..|+...+++++
T Consensus 341 Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 341 EKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888888888888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 363 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
++|+....|...|.++..+.+|++|++.|+++++.+|++.++.-.+..|...+.......+.+++
T Consensus 421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998875444444555555
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=197.02 Aligned_cols=362 Identities=20% Similarity=0.210 Sum_probs=267.8
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESY 139 (625)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 139 (625)
.+++...|+..|-+++.++|.-+.++..+|..|....+...|..+|.++.++++.+..+....+..|....+++.|....
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (625)
Q Consensus 140 ~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 219 (625)
-.+-+..|..... ..+...|..+...++..+|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..
T Consensus 550 l~~~qka~a~~~k-----~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 550 LRAAQKAPAFACK-----ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHhhhchHHHHH-----hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 6665555543222 12556899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC---
Q 006937 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--- 296 (625)
Q Consensus 220 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--- 296 (625)
++|.+....+..+.+....|+|.+|+..+...+............++.++.+++..+...|-..+|..+++++++..
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888777888888888888877777777777766666665431
Q ss_pred -----CCCH--------------------------------------------------------------HHHHHHHHH
Q 006937 297 -----WHYA--------------------------------------------------------------DAMYNLGVA 309 (625)
Q Consensus 297 -----~~~~--------------------------------------------------------------~~~~~la~~ 309 (625)
-++. ..|+++|..
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 0111 123344443
Q ss_pred HHh--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHc
Q 006937 310 YGE--------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (625)
Q Consensus 310 ~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 381 (625)
|.. +.+...|+.++.+++++..++...|+.||.+ ...|++.-|..+|-+++..+|.....|.++|.++.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 332 1122345555555555555555555555544 3334555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
.+++.|...|.++..++|.+...|...+.+....|+.-++...|..
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-20 Score=189.37 Aligned_cols=302 Identities=12% Similarity=0.005 Sum_probs=238.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH-HHHHHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-PAYYNL 197 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~l 197 (625)
....|.+....|+++.|.+.+.++.+..|+.... +...|.+....|+++.|..++.++.+..|++. .+....
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~-------~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLN-------LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 3555677778888888888888888877765443 45567777788888888888888888888764 466667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhh
Q 006937 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (625)
Q Consensus 198 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (625)
+.++...|++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....++.....+.. ....+ ..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~~~--~l 236 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-KAEIG--LL 236 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHH--HH
Confidence 8888899999999999999999999999999999999999999999999988888775444332211111 11111 11
Q ss_pred hcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHH
Q 006937 278 LEGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC--NNLGVIYKDRDNLD 351 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~~~~~ 351 (625)
..+..+++.+.+.++....| +++..+..++..+...|++++|.+.++++++..|++.... ..........++.+
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 12333445556777777666 5899999999999999999999999999999999987532 33333444568899
Q ss_pred HHHHHHHHHHccCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 352 KAVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 352 ~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
.+++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ ++++..|+... +..+|.++.++|+.++|.++|++
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999 899999999999999999999999 67788888655 55999999999999999999999
Q ss_pred HHhc
Q 006937 428 CLKI 431 (625)
Q Consensus 428 al~~ 431 (625)
++..
T Consensus 396 ~l~~ 399 (409)
T TIGR00540 396 SLGL 399 (409)
T ss_pred HHHH
Confidence 8764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-18 Score=189.49 Aligned_cols=366 Identities=14% Similarity=0.067 Sum_probs=254.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+...++..-..+.+.|++++|+++|+++.+.+. .+...+..+...+...|..++|...++.... | +...+..+-.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~ 445 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMS 445 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHH
Confidence 455666777778899999999999999887653 2333344455556677888888887776543 3 4566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSE 203 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~ 203 (625)
.+...|++++|...|+++.+....... .++..+...+.+.|+.++|.++|+++.+.... +...|..+...|.+
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~------~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADC------KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 778888888888888887765433211 12556666777778888888888887765432 57777778888888
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHhhHHHHHHHhchhhhh
Q 006937 204 LMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 204 ~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
.|++++|++.|+++.+..- -+..+|..+...+.+.|++++|.+.|.++... .|+. . .|..+...+.+
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-v-------TynaLI~ay~k 591 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-I-------TVGALMKACAN 591 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-H-------HHHHHHHHHHH
Confidence 8888888888887765431 23667777888888888888888888877642 3432 1 23333344455
Q ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVEC 356 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (625)
.|++++|.++|+++.+.. +.+...|..+...|.+.|++++|+.+|+++.+.. ..+...|..+...+.+.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 677788888887777665 3456677777777777888888888877777652 22356777777777777777777777
Q ss_pred HHHHHccC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 357 YQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 357 ~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
++++.+.. +.+...+..+...|.+.|++++|.+.|++..+. .| +...|..+...|.+.|++++|.+.|++..+
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777653 334567777777777777777777777776553 33 356677777777777777777777777654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-20 Score=186.78 Aligned_cols=302 Identities=12% Similarity=0.009 Sum_probs=189.6
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILY 126 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 126 (625)
+...+..|...+..|+++.|.+.+.++.+..|+....+...|.++..+|++++|..++.++.+..|++. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 445566777777778888888888777777777777777777777777888888888877777777664 4555567777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH----HHHHHHH
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY----NLGVVYS 202 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~----~la~~~~ 202 (625)
...|++++|...++++++..|+++.+ +..++.++...|++++|++.+.+..+....++.... ....-..
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~-------l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEV-------LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 77788888888888877777777765 556666677777787777777777766444333221 1111223
Q ss_pred HcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh
Q 006937 203 ELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 203 ~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
..+..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++......
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-------------- 302 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-------------- 302 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH--------------
Confidence 33444445556666666666 467777777777777777777777777777777765421100
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--EACNNLGVIYKDRDNLDKAVEC 356 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~ 356 (625)
..........++.+.+++.++++++..|+++ ..+..+|.++.+.|++++|.++
T Consensus 303 -------------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 303 -------------------------LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred -------------------------HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 0111111222334445555555555555555 5555556666666666666666
Q ss_pred HH--HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 357 YQ--MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 357 ~~--~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (625)
|+ .+++..|+... +..+|.++.+.|+.++|.+++++++.
T Consensus 358 le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 358 FKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66 34445554433 33556666666666666666665544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=200.05 Aligned_cols=262 Identities=21% Similarity=0.197 Sum_probs=122.4
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 006937 161 TDLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (625)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 238 (625)
..++.++...|++++|++++.+.+.. .|+++..|..+|.+....+++++|+..|++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 35688888999999999999765544 488999999999999999999999999999999999988888888888 799
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCCH
Q 006937 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKF 316 (625)
Q Consensus 239 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~ 316 (625)
+++++|+.+++++.+..++ +..+. ....++...++++++...++++.... +.++..+..+|.++.+.|+.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~-~~~l~-------~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD-PRYLL-------SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccccccc-cchhh-------HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999998876654 22222 23334455789999999999977654 67888999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 317 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (625)
++|+..|+++++.+|++..+...++.++...|+++++...++...+..|+++..+..+|.++..+|++++|+.+|+++++
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
.+|+++.++..+|.++...|+.++|..+++++++.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999998764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-19 Score=173.29 Aligned_cols=251 Identities=18% Similarity=0.168 Sum_probs=206.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
....++..+..++..++|...++..+.+++..|++.+.+...|..+..+|+.++|......+++.++.+...|..+|.++
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
....+|++|+++|+.|+...|++... +..++....+.++++.....-.+.++..|.....|...+..+...|+
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qi-------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQI-------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876 77777777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh
Q 006937 207 YDTALGCYEKAALER---PMY-----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 207 ~~~A~~~~~~al~~~---~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
+..|...++...+.. |.. .+.......+..+.|.+++|++.+..--...-+.. ......+.++..
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkl-------a~~e~ka~l~~k 231 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKL-------AFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHH-------HHhhhHHHHHHH
Confidence 999999888876654 321 23444556666777777777776654322111111 122233455555
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 311 (625)
.+++++|...|...+..+|++...+..+-.++.
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 678888888888888888888776666555554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=166.34 Aligned_cols=382 Identities=18% Similarity=0.153 Sum_probs=293.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhc--------CHHHHHHHHHH-HHhcC--CCc----
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN--------MGRLAFDSFSE-AVKLD--PQN---- 115 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~-al~~~--p~~---- 115 (625)
-+-+|..+++...|+...+++...++..|++..+|.....++...- +-.+|...++. .+... |..
T Consensus 7 ~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~ 86 (478)
T KOG1129|consen 7 DYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKT 86 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccC
Confidence 4567889999999999999999999999999999999888875432 22245544432 11111 100
Q ss_pred --------------------HHHHHHHHHH-HHHcCCHHHHHHH--------------------------------HHHH
Q 006937 116 --------------------ACAHTHCGIL-YKDEGRLVEAAES--------------------------------YHKA 142 (625)
Q Consensus 116 --------------------~~~~~~la~~-~~~~g~~~~A~~~--------------------------------~~~a 142 (625)
+.+....... -.+-|-.++|+.. |-.+
T Consensus 87 p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~nl 166 (478)
T KOG1129|consen 87 PFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYNL 166 (478)
T ss_pred CCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceeeh
Confidence 0000000000 0111222222111 1111
Q ss_pred HhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHHcCCHHHHHH
Q 006937 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PH-------YAPAYYNLGVVYSELMQYDTALG 212 (625)
Q Consensus 143 l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~-------~~~~~~~la~~~~~~~~~~~A~~ 212 (625)
-.++|........+...++. .+++..++...|-......++.+ |. +......+|.||+.+|-+.+|.+
T Consensus 167 sRLN~tkYa~~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aek 244 (478)
T KOG1129|consen 167 SRLNPTKYAERPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEK 244 (478)
T ss_pred hhcCchhhccChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHH
Confidence 22233222222222333332 24555677777776666555442 11 23344679999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHH
Q 006937 213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (625)
Q Consensus 213 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 292 (625)
.++..++..|. ++.+..++.+|.+..+...|+..+.+.++..|.+.......+. ++...++.++|.++|+.+
T Consensus 245 qlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~AR-------i~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 245 QLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQAR-------IHEAMEQQEDALQLYKLV 316 (478)
T ss_pred HHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHH-------HHHHHHhHHHHHHHHHHH
Confidence 99999998875 8899999999999999999999999999999998765555444 445567999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CCHH
Q 006937 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQ 369 (625)
Q Consensus 293 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~ 369 (625)
++.+|.+.++...+|.-|+..++.+-|+.+|++.+++.-.+++.+.++|.+++..++++-++..|++++.... ...+
T Consensus 317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaD 396 (478)
T KOG1129|consen 317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAAD 396 (478)
T ss_pred HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998743 2367
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
+|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-...|+-.+...|+
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999988887774
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-20 Score=181.60 Aligned_cols=303 Identities=11% Similarity=0.002 Sum_probs=237.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH-HHHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-YYNL 197 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~l 197 (625)
.+..|......|++++|.+...+.-+..+. +.. .+...+......|+++.|..++.++.+.+|+.... ....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l------~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVV------NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345566677789999888777765554322 222 13344556678899999999999998888887533 3445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh-HHHHHHHhchhh
Q 006937 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN-MAIALTDLGTKV 276 (625)
Q Consensus 198 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~l~~~~ 276 (625)
+.++...|++++|+..++++.+..|+++.++..++.+|...|++++|+..+.+..+....++..... ...++..+....
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999998888888777665443221 112322222222
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (625)
Q Consensus 277 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (625)
....+.+...+.++......|+++.+...++..+...|+.++|...++++++. +.++......+.+ ..++.+++++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 22334555566666665667889999999999999999999999999999994 5556555555554 44999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
+++.++.+|+++..+..+|.++...|++++|.++|+++++..|++. .+..++.++.++|+.++|.++|++++.+.
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999954 46689999999999999999999998865
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-19 Score=166.17 Aligned_cols=309 Identities=15% Similarity=0.109 Sum_probs=269.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 006937 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (625)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~ 167 (625)
+|.++...+-+.-+..++-.-...-|+|...+..+|.+++..|++++|+..|+++..++|..... .-..|..+
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~-------MD~Ya~LL 276 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA-------MDLYAVLL 276 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh-------HHHHHHHH
Confidence 45555555555666666677777889999999999999999999999999999999999998776 44456667
Q ss_pred HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (625)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 247 (625)
...|++++-.......+..+.....-|+--+...+..+++..|+.+-+++++.+|.+..++...|.++...++.++|+-.
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence 77899999999888888888778888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHH
Q 006937 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG-VAYG-EMLKFDMAIVFYEL 325 (625)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la-~~~~-~~~~~~~A~~~~~~ 325 (625)
|+.+..+.|.....+..+..+ |...+++.+|.-..+.++...|.++.++..+| .++. .-.--++|.+.+++
T Consensus 357 FR~Aq~Lap~rL~~Y~GL~hs-------YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 357 FRTAQMLAPYRLEIYRGLFHS-------YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHhcchhhHHHHHHHHHH-------HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 999999999876655554444 44578999999999999999999999999886 4443 34457899999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 006937 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (625)
Q Consensus 326 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (625)
++.+.|....+-..+|.++...|.++.++..+++.+...|+. ..+..+|.++...+.+.+|+++|..++.++|++..+.
T Consensus 430 ~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 430 SLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred hhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 999999999999999999999999999999999999988764 6788999999999999999999999999999988777
Q ss_pred HHHHHH
Q 006937 406 NNLGVL 411 (625)
Q Consensus 406 ~~la~~ 411 (625)
..+-.+
T Consensus 509 ~Gl~~l 514 (564)
T KOG1174|consen 509 RGLRLL 514 (564)
T ss_pred HHHHHH
Confidence 665444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-20 Score=179.37 Aligned_cols=349 Identities=16% Similarity=0.100 Sum_probs=294.3
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCHHHHHhHH-HHHHHhcCHHHHHHHHHHHHhcCC-----CcHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKD--SGNVEAHIGKG-ICLQMQNMGRLAFDSFSEAVKLDP-----QNACA 118 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~ 118 (625)
..+.|..++..+...|.-..|+.+++..+... |+++..+...+ .|....+.+++++.+..+++.... -.+..
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 46778999999999999999999999999988 77776655554 456678999999999999998432 23567
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh-
Q 006937 119 HTHCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI- 186 (625)
Q Consensus 119 ~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~- 186 (625)
+..+|.+|..+- ...+++..++++++.+|.++.+ .+.++.-|..+++.+.|+....++++.
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~-------if~lalq~A~~R~l~sAl~~~~eaL~l~ 508 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV-------IFYLALQYAEQRQLTSALDYAREALALN 508 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 788887776432 3568899999999999999876 777888888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------
Q 006937 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP---------- 256 (625)
Q Consensus 187 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------- 256 (625)
..+++.+|..++.++...+++.+|+...+.++...|+|.........+-...++.++|+..+...+....
T Consensus 509 ~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 509 RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 5568999999999999999999999999999999888766666556666666666666665554443311
Q ss_pred ----------------------------------------------------CcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 257 ----------------------------------------------------NFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 257 ----------------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
.....+...-..+...+..+...++.++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 1112233334445566677778889999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHc
Q 006937 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALS 362 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~ 362 (625)
|..++.++-.++|..+..|+..|.++...|+..+|.+.|..++.++|++......+|.++.+.|+..-|.. .+..+++
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888 9999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 006937 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (625)
Q Consensus 363 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (625)
++|.++++|+.+|.++..+|+.++|.++|..++++.+.+|
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999987765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-20 Score=197.10 Aligned_cols=400 Identities=14% Similarity=0.022 Sum_probs=314.6
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
.+...+..+...+...++++.|..++..+.+. .| +...+..+...|.+.|++++|.+.|++..+ .+...|..+.
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li 196 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTII 196 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHH
Confidence 45677778888888999999999999888764 34 567788888899999999999999988743 3566788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHH-----------------------------HHHHHHHHHHHhHHHHHHhCChH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKP-----------------------------AAECLAIVLTDLGTSLKLAGNTQ 174 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------~~~~~a~~~~~l~~~~~~~~~~~ 174 (625)
..|.+.|++++|+..|+++.+....... ....-..++..+...|.+.|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 8999999999999999988654321100 00001223666788889999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (625)
Q Consensus 175 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (625)
+|.+.|++.. +.+..+|..+...|.+.|++++|++.|++..+.. .-+..++..+...+.+.|++++|.+.+..+++
T Consensus 277 ~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 277 DARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999998763 4578899999999999999999999999987653 22467889999999999999999999999988
Q ss_pred cCC-CcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C
Q 006937 254 VSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-P 331 (625)
Q Consensus 254 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~ 331 (625)
... .+.. ++..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|+.++|++.|++..+.. .
T Consensus 354 ~g~~~d~~-------~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 354 TGFPLDIV-------ANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred hCCCCCee-------ehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 752 2222 344455566667899999999998754 356789999999999999999999999988753 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006937 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (625)
Q Consensus 332 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (625)
.+...+..+...+...|..++|.++|+...+..+ .+...|..+..++.+.|++++|.+.+++. ...| +...|..+.
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll 501 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALL 501 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHH
Confidence 3577788888999999999999999999876432 23457888999999999999999998764 2334 367799999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHHHHHHH
Q 006937 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466 (625)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (625)
..+...|+.+.|...+++.+++.|++...+.. +...|...|..+++.+..+....
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~--L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYVV--LLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH--HHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999997766543 45567777877766665554443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-18 Score=182.93 Aligned_cols=360 Identities=13% Similarity=0.045 Sum_probs=298.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHH
Q 006937 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-QNACAHTHCGILYKDEGRLV 133 (625)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~ 133 (625)
...+...|..++|..+|+.... | +...+..+-.++...|++++|...|.++.+... .+...+..+...|.+.|+.+
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd 489 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence 3446678999999999987654 4 567788888889999999999999999988654 36778899999999999999
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 006937 134 EAAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTAL 211 (625)
Q Consensus 134 ~A~~~~~~al~~~~~-~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~ 211 (625)
+|.+.|+++.+.... +.. .|..+...|.+.|++++|++.|.++.+..- -+...|..+...|.+.|++++|.
T Consensus 490 ~A~~vf~eM~~~Gv~Pdvv-------TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEANVH-------TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999876432 233 277778888999999999999999876532 24788999999999999999999
Q ss_pred HHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHhhHHHHHHHhchhhhhcCCHHHHH
Q 006937 212 GCYEKAALE----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (625)
Q Consensus 212 ~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (625)
+.+.++... .|+ ...+..+...|.+.|++++|.+.|+++.+... .+... |..+...+.+.|++++|+
T Consensus 563 ~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t-------ynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 563 DVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV-------YTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred HHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH-------HHHHHHHHHhcCCHHHHH
Confidence 999999763 344 67888899999999999999999999988753 23333 344445555678999999
Q ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006937 287 AYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (625)
Q Consensus 287 ~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (625)
.+|++..+.. ..+..++..+...+.+.|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.|++..+..
T Consensus 635 ~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999998763 2246788999999999999999999999999874 4568899999999999999999999999986542
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006937 365 -PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (625)
Q Consensus 365 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (625)
..+...|..+...|.+.|++++|+++|++.... .|+ ...+..+...+.+.|++++|.+++.+..+...
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 234678999999999999999999999998765 344 66777888999999999999999999988643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=193.48 Aligned_cols=263 Identities=20% Similarity=0.179 Sum_probs=83.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
..+.+|..++..|++++|++++++.+.. .|+++..|..+|.+....+++++|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3446677777888888888877655443 367777777777777777778888888887777777777777777766 6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSELM 205 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~ 205 (625)
..+++++|+..++++.+..++ +.. +.....++...++++++...++++.... +.++..+..+|.++.+.|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~-~~~-------l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGD-PRY-------LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred ccccccccccccccccccccc-cch-------hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 777777777777777665433 222 3334455566677777777777765543 456667777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHH
Q 006937 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (625)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (625)
+.++|++.++++++.+|++..+...++.++...|+.+++...+....+..|+++
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-------------------------- 214 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-------------------------- 214 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC--------------------------
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH--------------------------
Confidence 777777777777777777777777777777777777776666666555544443
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006937 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (625)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (625)
..+..+|.++...|++++|+.+|+++++.+|+++..+..+|.++...|+.++|..+++++++
T Consensus 215 ---------------~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 215 ---------------DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp ---------------CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ---------------HHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34444555555555555555555555555555555555555555555555555555555543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-18 Score=187.34 Aligned_cols=359 Identities=13% Similarity=0.041 Sum_probs=294.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHCGIL 125 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 125 (625)
.+......+...|++.+|+.+|+.+....+ -+...+..+..++...++.+.|...+..+.+. .| +...+..+...
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 567777888999999999999999876543 35677888888899999999999999988764 34 57788899999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC----------------
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------- 189 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---------------- 189 (625)
|.+.|++++|.+.|++..+ |+ .. .|..+...+.+.|++++|++.|+++.+....
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~~-~~-------t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--RN-LA-------SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--CC-ee-------eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 9999999999999998854 32 22 2777788888999999999999998765321
Q ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 190 --------------------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (625)
Q Consensus 190 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (625)
+..++..+...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..|+
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 23345667888999999999999998763 4567899999999999999999999999
Q ss_pred HHHhc--CCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006937 250 RCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (625)
Q Consensus 250 ~al~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 326 (625)
+..+. .|+. . ++..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|+.++|...|++.
T Consensus 315 ~M~~~g~~pd~-~-------t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 315 EMRDSGVSIDQ-F-------TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHcCCCCCH-H-------HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 98764 3432 2 34445555566789999999999999876 556788999999999999999999999987
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHH
Q 006937 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYAE 403 (625)
Q Consensus 327 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~ 403 (625)
.+ .+...|+.+...|.+.|+.++|++.|++..+.. .-+...+..+...+...|+.++|.++|+...+..+ .+..
T Consensus 387 ~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 387 PR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred CC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 54 357789999999999999999999999988653 22466788888999999999999999999986432 2356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
.|..+..+|.+.|+.++|.+.+++. ...|+
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~ 493 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA-PFKPT 493 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence 7889999999999999999998864 23444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=158.13 Aligned_cols=216 Identities=24% Similarity=0.240 Sum_probs=199.3
Q ss_pred ccccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHH
Q 006937 41 STLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (625)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (625)
.+......+..+.+|..|++.|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|+++++++|++.+++.
T Consensus 28 ~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 28 QTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhh
Confidence 34444567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (625)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (625)
+.|..++.+|++++|...|++++.. |..... +..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~----s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALAD-PAYGEP----SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhC-CCCCCc----chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 9999999999999999999999973 443332 44589999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 006937 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (625)
++..|+|-.|..++++.....+-..+.+.....+-...|+-+.+..+=.+.....|...+.
T Consensus 183 ~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 183 HYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999999999999998888888999999999999999999999988988999987643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-20 Score=191.64 Aligned_cols=187 Identities=16% Similarity=0.084 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhc---------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 006937 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQN---------MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (625)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (625)
+++|+.+|+++++.+|+++.++..+|.++...+ ++++|+..++++++++|+++.++..+|.++...|++++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 445555555555555555555555544443221 24445555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (625)
Q Consensus 135 A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 214 (625)
|+..|+++++++|++..+ +..+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+
T Consensus 357 A~~~~~~Al~l~P~~~~a-------~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 357 GSLLFKQANLLSPISADI-------KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 555555555555544443 3334444444455555555555555555544444434444444444555555555
Q ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 215 EKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (625)
Q Consensus 215 ~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 257 (625)
+++++.. |+++..+..+|.++...|++++|...+.++....|.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 5444442 344444444555555555555555554444444443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-19 Score=193.46 Aligned_cols=352 Identities=15% Similarity=0.065 Sum_probs=235.9
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHh
Q 006937 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDL 163 (625)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~l 163 (625)
..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|++.|+++.+.. |+... +..+
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--------~~~l 395 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--------IASV 395 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--------HHHH
Confidence 333444444444444444444432 1223344444445555555555555555443321 22211 2222
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 006937 164 GTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (625)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 242 (625)
-..+...|++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.+
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~ 472 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCF 472 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHH
Confidence 2233444555555555555554432 2345666777888888888888888877543 34567888888888888888
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHH----------------------------hchhhhhcCCHHHHHHHHHHHHh
Q 006937 243 SAIACYERCLAVSPNFEIAKNNMAIALTD----------------------------LGTKVKLEGDINQGVAYYKKALY 294 (625)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------------------------l~~~~~~~~~~~~A~~~~~~~l~ 294 (625)
+|+..|+++....+.+...+..+..++.. +-..|.+.|++++|...|+..
T Consensus 473 eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-- 550 (857)
T PLN03077 473 EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-- 550 (857)
T ss_pred HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--
Confidence 88888888875433333333322222222 225677789999999999886
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CCHHH
Q 006937 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQS 370 (625)
Q Consensus 295 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~ 370 (625)
+.+..+|..+...|...|+.++|++.|++..+. .|+ ...+..+-..+.+.|+.++|.++|+...+..+ .+...
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 567889999999999999999999999998875 344 55667777789999999999999999884432 23578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhcc
Q 006937 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450 (625)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 450 (625)
|..+..++.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.+....+++++++|++...+.. ++..|..
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l--l~n~ya~ 703 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL--LCNLYAD 703 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH--HHHHHHH
Confidence 999999999999999999999875 34555 6778888888889999999999999999999998766543 4455666
Q ss_pred CCCchHHHHH
Q 006937 451 EGHDDKLFEA 460 (625)
Q Consensus 451 ~~~~~~~~~~ 460 (625)
.|+.++..+.
T Consensus 704 ~g~~~~a~~v 713 (857)
T PLN03077 704 AGKWDEVARV 713 (857)
T ss_pred CCChHHHHHH
Confidence 6665554433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-20 Score=190.56 Aligned_cols=250 Identities=12% Similarity=-0.004 Sum_probs=144.7
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 006937 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (625)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 241 (625)
+++++|+..|+++++++|+++.++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3456777777777777777777777777766533 2366777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006937 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (625)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~ 321 (625)
++|+..|+++++++|++...+..++.++.. .|++++|+..++++++.+|.++..+..++.++...|++++|+.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-------~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFM-------AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 777777777777776665444333333332 3455555555555555555555544444444555555555665
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 322 FYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 322 ~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
.+++++... |+++..+..+|.++...|++++|...+++.....|....+...++..|...|+ +|...+++.++....
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 555555543 44555555555555555666666655555555555555555555555555552 444444444443222
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
...-...+..+|.-.|+.+.+..+ +++.+
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 222222244555555555555444 44433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-19 Score=175.53 Aligned_cols=296 Identities=10% Similarity=-0.029 Sum_probs=144.1
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhH-HHHHHHhcCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-GICLQMQNMGRLAFDSFSEAVKLDPQNACA-HTHCGILY 126 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~ 126 (625)
...+..|...+..|+|++|.+.+.+.-+..+ ++..++.+ +......|+++.|..++.++.+..|++..+ ....+.++
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3344555555555666655555544433222 22222222 333355555666666665555555554322 22335555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH--------HHH
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY--------NLG 198 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~--------~la 198 (625)
...|++++|+..++++.+..|+++.+ +..++.++...|++++|++.+.+..+..+.++.... .+.
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~a-------l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEV-------LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 55556666655555555555555554 333444444555555555555555554433322111 111
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh
Q 006937 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
.......+-+...+.++..-+..|+++.+...++..+...|+.++|...++++++..+
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~---------------------- 294 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY---------------------- 294 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------------------
Confidence 1111122222223333333233344555555555555555555555555555555322
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
++......+.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|+
T Consensus 295 --------------------~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 295 --------------------DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred --------------------CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22222222222 22555555555555555555555555555555555566666666666
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 359 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
++++..|++.. +..++.++.+.|+.++|..+|++++.+
T Consensus 353 ~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 353 AALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66555555322 335555566666666666666655543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-21 Score=181.34 Aligned_cols=239 Identities=20% Similarity=0.256 Sum_probs=177.6
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006937 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (625)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 240 (625)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 34688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCHHH
Q 006937 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDM 318 (625)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~ 318 (625)
-.+|+.++.+-+...|........--.-.............+..-.++|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999888764311100000000000000111123344455555555555 566777777777777777777
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006937 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (625)
Q Consensus 319 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (625)
|+.+|+.++...|++...|+.||-.+....+..+|+..|.+|+++.|....++++||..+..+|.|++|.++|-.+|.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777664
Q ss_pred C
Q 006937 399 P 399 (625)
Q Consensus 399 p 399 (625)
+
T Consensus 529 ~ 529 (579)
T KOG1125|consen 529 R 529 (579)
T ss_pred h
Confidence 3
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-21 Score=174.70 Aligned_cols=303 Identities=18% Similarity=0.180 Sum_probs=220.3
Q ss_pred ccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 006937 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (625)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (625)
.....++.....+..++...+|.+|+..+..+++..|+++..|...+.++...|++++|....++.++++|.........
T Consensus 44 ~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~ 123 (486)
T KOG0550|consen 44 EAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLRE 123 (486)
T ss_pred hHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccch
Confidence 33456788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC---CCCHHHHHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PHYAPAYYNLGV 199 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~ 199 (625)
++++...++..+|...++ +..+ + ....|+..+++.+..+ |....+....+.
T Consensus 124 ~~c~~a~~~~i~A~~~~~--------~~~~-------~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~ 177 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLK--------SKQA-------Y-----------KAANALPTLEKLAPSHSREPACFKAKLLKAE 177 (486)
T ss_pred hhhhhhhHHHHHHHHHhh--------hhhh-------h-----------HHhhhhhhhhcccccccCCchhhHHHHhhhh
Confidence 999999999999988887 1111 0 1223333444433332 444566677889
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhc
Q 006937 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 200 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (625)
|+...|++++|...--..+++++.+.++++..|.++...++.+.|+..|++++.++|+...... ++.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~----~~~--------- 244 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS----ASM--------- 244 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHh----Hhh---------
Confidence 9999999999999999999999999999999999999999999999999999999998653211 000
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
.|+....+..-| .-.++.|++.+|.++|..
T Consensus 245 ----------------~~k~le~~k~~g----------------------------------N~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 245 ----------------MPKKLEVKKERG----------------------------------NDAFKNGNYRKAYECYTE 274 (486)
T ss_pred ----------------hHHHHHHHHhhh----------------------------------hhHhhccchhHHHHHHHH
Confidence 111122233334 444444555555555555
Q ss_pred HHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 360 ALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 360 al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
++.++|++ ...|.+++.+..++|+..+|+...+.++++++....++...|.|+..++++++|++.|+++++...+
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 55555443 3355555666666666666666666666666666666666666666666666666666666655444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=166.70 Aligned_cols=242 Identities=19% Similarity=0.168 Sum_probs=155.9
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhH
Q 006937 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164 (625)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~ 164 (625)
...+|.||+++|.+.+|.+.++..++..| .++.+..++.+|.+..+...|+..+...+...|.+... +..++
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~-------l~g~A 297 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTY-------LLGQA 297 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhh-------hhhhH
Confidence 34677777777777777777777777655 46667777777777777777777777777777776655 55566
Q ss_pred HHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006937 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (625)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 244 (625)
+++...+++++|+++|+.+++.+|.+.++.-.+|.-|+..++.+-|+.+|++.++..-.+++.+.++|.+++..++++-+
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 66666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006937 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (625)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (625)
+..|++++....+... .+.+++++|.+....|++..|..+|+-++..++++.+++.++|.+..+.|+.++|..+++
T Consensus 378 L~sf~RAlstat~~~~----aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQ----AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHHHHHhhccCcch----hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 7777777765443221 133344444444444444444444444444444444444444444444444444444444
Q ss_pred HHHhhCCCCHHHHH
Q 006937 325 LAFHFNPHCAEACN 338 (625)
Q Consensus 325 ~al~~~~~~~~~~~ 338 (625)
.+-...|+..+..+
T Consensus 454 ~A~s~~P~m~E~~~ 467 (478)
T KOG1129|consen 454 AAKSVMPDMAEVTT 467 (478)
T ss_pred HhhhhCcccccccc
Confidence 44444444333333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=180.76 Aligned_cols=266 Identities=21% Similarity=0.267 Sum_probs=217.8
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
+...-+..|..+++.|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|++..++..||..|
T Consensus 284 ~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 284 DHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred CCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHc
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSEL 204 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~ 204 (625)
...|.-.+|+.++.+.+...|........--.-.............+..-.+.|..+....| .+++++..||.+|...
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999999999999999988764321000000000000001111234455667777777777 6899999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
|+|++|+.+|+.|+...|++...|..||-.+....+.++|+..|++|+++.|....++++++..+.++ |.|++
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-------G~ykE 516 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-------GAYKE 516 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-------hhHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888888776 59999
Q ss_pred HHHHHHHHHhhCCCC----------HHHHHHHHHHHHhcCCHHHH
Q 006937 285 GVAYYKKALYYNWHY----------ADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 285 A~~~~~~~l~~~~~~----------~~~~~~la~~~~~~~~~~~A 319 (625)
|.++|-.++.+.+.. ..+|..|-.++...++.+.+
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 999999999876541 13455555555555555533
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-17 Score=155.46 Aligned_cols=392 Identities=13% Similarity=0.037 Sum_probs=276.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
.+.++.--..+...|+|++|.....+++...|++..++...-.++.+.++|++|+...++-......+ ...+..+.|.+
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Y 90 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHH
Confidence 47788888999999999999999999999999999999999999999999999996555433222122 22368899999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC-------------------
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------------- 188 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------------------- 188 (625)
+.+..++|+..++ ..++.+... +...+.++++.|+|++|+..|+..++.+.
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~l-------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKL-------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred HcccHHHHHHHHh---cccccchHH-------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 9999999999998 334444333 45566777778999999999988754421
Q ss_pred -----------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHcCCH
Q 006937 189 -----------H-YAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PM-------YAEAYCNMGVIYKNRGDL 241 (625)
Q Consensus 189 -----------~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~-------~~~~~~~la~~~~~~g~~ 241 (625)
. +.+.+++.+.++...|+|.+|++.+++++++. .+ -..+...++.++..+|+.
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1 35678999999999999999999999995431 11 124667889999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHH------------------------------------------HHhchhhhhc
Q 006937 242 ESAIACYERCLAVSPNFEIAKNNMAIAL------------------------------------------TDLGTKVKLE 279 (625)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~------------------------------------------~~l~~~~~~~ 279 (625)
++|...|...+..++.+.........-+ .+.+.+....
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998876543211111100 1111111111
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
+..+.+.+.....-...|...-..........+...+.+|..++....+.+|.+ ..+...++.+...+|+++.|++.+.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 222222222222112222222222223333333447888999999999888887 7788889999999999999999999
Q ss_pred HHHcc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 359 MALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDA 424 (625)
Q Consensus 359 ~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (625)
..+.. ....+.+-..+-.++...++-+-|...+.+++.- .+.....+..++..-.+.|+-++|...
T Consensus 401 ~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred HHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 44321 1223445555566677777766676666666653 223334566677788888999999999
Q ss_pred HHHHHhcCCCChhhhhhHHHHhhhcc
Q 006937 425 YEQCLKIDPDSRNAGQNRLLAMNYIN 450 (625)
Q Consensus 425 ~~~al~~~p~~~~~~~~~~~~~~~~~ 450 (625)
+++.++.+|++.++...+..+++++.
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999888777653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-19 Score=167.73 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHcCC----CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 62 NKFVDALALYEIVLEKDS----GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (625)
Q Consensus 62 g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (625)
+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445555555555554222 1234455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 006937 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (625)
Q Consensus 138 ~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (625)
.|+++++++|++..+ +.++|.++...|++++|++.++++++.+|+++
T Consensus 120 ~~~~Al~l~P~~~~a-------~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 120 AFDSVLELDPTYNYA-------YLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 555555555554433 44444444444555555555555555444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-18 Score=164.77 Aligned_cols=244 Identities=18% Similarity=0.133 Sum_probs=192.6
Q ss_pred HhcCHHHHHHHHHHHHhcCC---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH
Q 006937 94 MQNMGRLAFDSFSEAVKLDP---Q-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169 (625)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~ 169 (625)
..+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|++..+ +..+|.++..
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-------~~~lg~~~~~ 110 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADA-------YNYLGIYLTQ 110 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH-------HHHHHHHHHH
Confidence 33577889999999996443 3 36789999999999999999999999999999998776 7888999999
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (625)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (625)
.|++++|+..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++.... ...+....+++++|+..+.
T Consensus 111 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLK 189 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999874222 2234456789999999998
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 006937 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (625)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 329 (625)
+.....+... + ..+.....++..... ..++.+.+.++...+..|...++|+.+|.++...|++++|+.+|+++++.
T Consensus 190 ~~~~~~~~~~--~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 190 QRYEKLDKEQ--W-GWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHhhCCccc--c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8765543222 1 123444445543221 12334444455556777788899999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHcCC
Q 006937 330 NP-HCAEACNNLGVIYKDRDN 349 (625)
Q Consensus 330 ~~-~~~~~~~~la~~~~~~~~ 349 (625)
+| +..+..+.+..+....++
T Consensus 266 ~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 266 NVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCchHHHHHHHHHHHHHHHhh
Confidence 96 666666666665555444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-19 Score=177.11 Aligned_cols=378 Identities=19% Similarity=0.227 Sum_probs=299.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHH--------------------------HHhcCHHHHHHH
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL--------------------------QMQNMGRLAFDS 104 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--------------------------~~~g~~~~A~~~ 104 (625)
....+.+......|.+|...+....... .+-+.+..+..|+ ....+...|+..
T Consensus 402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s-~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~a 480 (1238)
T KOG1127|consen 402 QRAKGLAPIEANVYTDAAITLDLVSSLS-FNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHA 480 (1238)
T ss_pred hhhcchhHHHHhhchHHHHHHHHHHHhh-cCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4455566666777777777777666554 2211111111111 223457889999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 006937 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (625)
Q Consensus 105 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (625)
|-+++++++.-..++..+|.+|...-+...|..+|+++.++++.+..+ ....+..|....+++.|......+-
T Consensus 481 li~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea-------aaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 481 LIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA-------AAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh-------HHHHHHHhhccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998877 4556667777899999999977766
Q ss_pred hhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 185 KIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (625)
Q Consensus 185 ~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (625)
+..|.. ...|..+|..|.+.++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+....
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 666543 345677999999999999999999999999999999999999999999999999999999999999987766
Q ss_pred hhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------
Q 006937 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-------ADAMYNLGVAYGEMLKFDMAIVFYELAFHF------ 329 (625)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~------ 329 (625)
+..+..... .|.+.+|+..+...+...... ++.+..++..+...|-+.+|...+++.++.
T Consensus 634 fk~A~~ecd-------~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 634 FKEAVMECD-------NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 666665555 468999998888877654433 345555555555555555555555554432
Q ss_pred -----------------------CC-----------------------------------------CCHHHHHHHHHHHH
Q 006937 330 -----------------------NP-----------------------------------------HCAEACNNLGVIYK 345 (625)
Q Consensus 330 -----------------------~~-----------------------------------------~~~~~~~~la~~~~ 345 (625)
.| ..+..|+++|..|+
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 01 11346777887776
Q ss_pred H--------cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006937 346 D--------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (625)
Q Consensus 346 ~--------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (625)
. +.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.+...|.....|.++|.++....+
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 6 2344689999999999999999999999998 667999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhhhhHHH
Q 006937 418 ISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (625)
Q Consensus 418 ~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (625)
++.|...|.++..++|.+...|.+..+
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Al 892 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEAL 892 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHH
Confidence 999999999999999999888766543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-17 Score=158.25 Aligned_cols=346 Identities=16% Similarity=0.153 Sum_probs=282.4
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006937 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (625)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 162 (625)
..++..+.-.+..++|.+.++..+.+++..|++++.+...|..+...|+-++|......++..++.+... |..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC-------wHv 80 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC-------WHV 80 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh-------HHH
Confidence 4566677778889999999999999999999999999999999999999999999999999998887665 777
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 006937 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (625)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 242 (625)
+|.++....+|++|+++|+.|+..+|++...+..++.+..++++++.....-.+.++..|..-..|...+..+...|++.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC---CCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 006937 243 SAIACYERCLAVS---PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 243 ~A~~~~~~al~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 319 (625)
.|...++...+.. |+... .....+......+....|..++|++.+..--...-+........+.++..++++++|
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~--~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKED--YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHH--HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhH
Confidence 9999988877665 33222 222334444455666778888888877765544444555677789999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHc----------------------------------c-
Q 006937 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV-ECYQMALS----------------------------------I- 363 (625)
Q Consensus 320 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~----------------------------------~- 363 (625)
...|...+..+|++...+..+-.++..-.+--+++ ..|...-+ .
T Consensus 239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 99999999999999877666555553111111111 11111100 0
Q ss_pred --------------------------------------C--------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 364 --------------------------------------K--------PNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 364 --------------------------------------~--------~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
+ |.. ...++.++.-+...|+++.|..+++.|+
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 0 111 1245667888889999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 006937 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (625)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (625)
...|+..+.+...|+++...|+.++|..++..+.+++-.|.-
T Consensus 399 dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 399 DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 999999999999999999999999999999999999866543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-18 Score=160.63 Aligned_cols=206 Identities=21% Similarity=0.179 Sum_probs=188.8
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
...+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (625)
++...|++++|+..+++++...+.... ...+..+|.++...|++++|...+.+++..+|.+...+..+|.++...
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQP-----ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 999999999999999999985422111 223677899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (625)
|++++|...++++++..|.++..+..++.++...|+.++|..+.+.+....
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999999999999989889999999999999999999999888776554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-17 Score=180.22 Aligned_cols=360 Identities=10% Similarity=0.017 Sum_probs=280.5
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHCG 123 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la 123 (625)
.+...+..+...|.+.|++++|.++|++... .+...|..+...|.+.|++++|++.|++..+. .|+. ..+..+-
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll 396 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVL 396 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHH
Confidence 3567788889999999999999999998643 35678999999999999999999999988654 3544 3455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (625)
..+...|++++|.+.++.+.+....... .++..+...|.+.|++++|.+.|++..+ .+...|..+...|..
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~------~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYV------VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRL 467 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcch------HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHH
Confidence 5778888999999988888876543222 1366677778888888888888887543 345677888888888
Q ss_pred cCCHHHHHHHHHHHHHh-CCCCH----------------------------------HHHHHHHHHHHHcCCHHHHHHHH
Q 006937 204 LMQYDTALGCYEKAALE-RPMYA----------------------------------EAYCNMGVIYKNRGDLESAIACY 248 (625)
Q Consensus 204 ~~~~~~A~~~~~~al~~-~~~~~----------------------------------~~~~~la~~~~~~g~~~~A~~~~ 248 (625)
.|+.++|+..|+++... .|+.. .....+...|.+.|+.++|...|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 88888888888887653 23221 12233446778888888888888
Q ss_pred HHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006937 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (625)
Q Consensus 249 ~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al 327 (625)
+.. +.+...|.. +...+...|+.++|+++|++..+... .+..++..+-..+...|+.++|..+|+...
T Consensus 548 ~~~----~~d~~s~n~-------lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 548 NSH----EKDVVSWNI-------LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred Hhc----CCChhhHHH-------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 775 333334444 44445557899999999999887532 244556677778999999999999999998
Q ss_pred hhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 006937 328 HFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (625)
Q Consensus 328 ~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (625)
+.. ..+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++++++.|++...+
T Consensus 617 ~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y 694 (857)
T PLN03077 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY 694 (857)
T ss_pred HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Confidence 543 234688999999999999999999999986 34554 67788888888899999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
..++.+|...|++++|.+..+...+.
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999999999999887653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=162.93 Aligned_cols=262 Identities=19% Similarity=0.158 Sum_probs=225.1
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006937 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (625)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 236 (625)
+.-....|..++...+|.+|+..+..+++..|+++..|.+.+.++...+++++|....++.+++.|.....+...+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 33456677888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHhc
Q 006937 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN---WHYADAMYNLGVAYGEM 313 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~ 313 (625)
..++..+|...++.. .+ .....++..+++.+..+ |.-..+....+.++...
T Consensus 129 a~~~~i~A~~~~~~~---~~-----------------------~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~ 182 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSK---QA-----------------------YKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFL 182 (486)
T ss_pred hhHHHHHHHHHhhhh---hh-----------------------hHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhc
Confidence 999999998888711 00 01223333344433333 33345677788999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH------------HHHHHHHHHHHc
Q 006937 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ------------SLNNLGVVYTVQ 381 (625)
Q Consensus 314 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~------------~~~~la~~~~~~ 381 (625)
|++++|...--..+++++.+.++++..|.++...++.+.|+..|++++.++|++.. .+..-|.-.++.
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 99999999999999999999999999999999999999999999999999998643 677899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 006937 382 GKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (625)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (625)
|++.+|.+.|..+|.++|++ +..|.+++.+..++|+..+|+...+.+++++|....+...+..
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 99999999999999999986 5678999999999999999999999999999998877766543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-15 Score=142.01 Aligned_cols=369 Identities=14% Similarity=0.071 Sum_probs=294.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
+...|+..|+--..++++..|..+|+++|..+..+...|+..+.+-++......|...+.+++.+-|.-...|+....+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 45567788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
...|+...|.++|++-++..|+.. + +......-.+.+..+.|...|++-+-..|+ ...|...+..-.+.|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eq-a-------W~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQ-A-------WLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN 222 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHH-H-------HHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc
Confidence 999999999999999999999843 3 334444455567777888888887777765 6677777777777888
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------------------------
Q 006937 207 YDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF------------------------- 258 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------------- 258 (625)
..-|...|++|++.-.++. ......|..-..+..++.|.-+|+-+++.-|.+
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 8888888887776544432 233344444455666666766666666665554
Q ss_pred -------------------HHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHH-
Q 006937 259 -------------------EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD---------AMYNLGVA- 309 (625)
Q Consensus 259 -------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~---------~~~~la~~- 309 (625)
.++|..+ -.+....|+.+.-.+.|++++...|...+ .|.+.+..
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdy-------lrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalye 375 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDY-------LRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYE 375 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHH-------HHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 2222222 22233467889999999999988776432 22332221
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHH
Q 006937 310 YGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385 (625)
Q Consensus 310 ~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 385 (625)
-....+.+.+.+.|+.++++-|.. +.+|...|....++.+...|.+.+-.|+-..|.+ .+......+-.++++++
T Consensus 376 Ele~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFD 454 (677)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHH
Confidence 245789999999999999998875 7888999999999999999999999999999985 45555666778899999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
...++|++.++..|++..+|...|.+-..+|+.+.|...|+-|++..
T Consensus 455 RcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-18 Score=144.66 Aligned_cols=207 Identities=23% Similarity=0.215 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (625)
..+...||.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.+.|+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------------- 101 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------------- 101 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-------------
Confidence 3456666666677777777777777777777776666666666666666666666666666666555
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC
Q 006937 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRD 348 (625)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~ 348 (625)
+.+++++.|..++.+|++++|...|++++.. .+..+..+.++|.|..+.|
T Consensus 102 ----------------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~g 153 (250)
T COG3063 102 ----------------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAG 153 (250)
T ss_pred ----------------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcC
Confidence 4455566666666666666666666666653 3445667777777777777
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (625)
+++.|..+|+++++++|+.+.....++..+++.|++..|..++++.....+-..+.+.....+-...|+-+.|-++=.+.
T Consensus 154 q~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 154 QFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred CchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777766666677766677777777777777777777
Q ss_pred HhcCCCChhh
Q 006937 429 LKIDPDSRNA 438 (625)
Q Consensus 429 l~~~p~~~~~ 438 (625)
....|...+.
T Consensus 234 ~r~fP~s~e~ 243 (250)
T COG3063 234 QRLFPYSEEY 243 (250)
T ss_pred HHhCCCcHHH
Confidence 7777776543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-17 Score=144.19 Aligned_cols=258 Identities=20% Similarity=0.211 Sum_probs=142.0
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHH
Q 006937 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKNRGDLESA 244 (625)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A 244 (625)
.++.++|+..|..+++.+|...++...||++|...|..+.|+..-+..++. |+. .-+...+|.-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 344444444444444444444444444444444444444444444433322 211 22344444444444444444
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhcCCHHHH
Q 006937 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----ADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~~~~~~A 319 (625)
...|....+...--.. ++..+-.+|....++++|++..++..+..++. +..+..++..+....+.+.|
T Consensus 127 E~~f~~L~de~efa~~-------AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 127 EDIFNQLVDEGEFAEG-------ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred HHHHHHHhcchhhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 4444444432221111 22222333333444455554444444444432 23455566666666666666
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006937 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (625)
Q Consensus 320 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (625)
+..+.++++.+|.+..+-..+|.++...|+|++|++.++.+++.+|+. +++...|..||..+|+.++.+..+.++.+..
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 666666666666666666667777777777777777777777766665 4566667777777777777777777777666
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 399 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
++ +.+...++.+-....-.+.|..+..+-+...|+-.
T Consensus 280 ~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 280 TG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred CC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 55 44445555555566666667777777777777644
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-16 Score=141.63 Aligned_cols=234 Identities=20% Similarity=0.263 Sum_probs=196.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-----HHhhHHHHH
Q 006937 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-----AKNNMAIAL 269 (625)
Q Consensus 195 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~ 269 (625)
+..|.-+.-.++.++|+..|..+++.+|...++...+|.++...|..+.|+..-+..++ .|+... +...++.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 34466667778889999999999999999999999999999999999999988776654 455433 333444444
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHH
Q 006937 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-----AEACNNLGVIY 344 (625)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~ 344 (625)
.. .|-++.|...|....+...--..++..+..+|....++++|++.-++..++.+.. +..+..++..+
T Consensus 118 m~-------aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 118 MA-------AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HH-------hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 44 5688999999998887666667888999999999999999999999998887765 56788899999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHH
Q 006937 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSISLAID 423 (625)
Q Consensus 345 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~ 423 (625)
....+.+.|...+++|++.+|++..+-..+|.+....|+|+.|++.++.+++.+|+. +++...|..+|..+|+.++.+.
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887 5788889999999999999999
Q ss_pred HHHHHHhcCCCCh
Q 006937 424 AYEQCLKIDPDSR 436 (625)
Q Consensus 424 ~~~~al~~~p~~~ 436 (625)
++.++.+..++..
T Consensus 271 fL~~~~~~~~g~~ 283 (389)
T COG2956 271 FLRRAMETNTGAD 283 (389)
T ss_pred HHHHHHHccCCcc
Confidence 9999998887643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=155.98 Aligned_cols=203 Identities=26% Similarity=0.288 Sum_probs=144.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH
Q 006937 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (625)
Q Consensus 190 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 269 (625)
....+..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..++++++..|.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------- 98 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN----------- 98 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------
Confidence 356677777777777777777777777777777777777777777777777777777777776665554
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHc
Q 006937 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDR 347 (625)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~ 347 (625)
...+..+|.++...|++++|+..+++++... +.....+..+|.++...
T Consensus 99 ------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 99 ------------------------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred ------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 3445555556666666666666666666532 34456667777777777
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
|++++|...++++++..|++...+..+|.++...|++++|..++++++...|.++..+..++.++...|+.++|..+.+.
T Consensus 149 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred HHhcCC
Q 006937 428 CLKIDP 433 (625)
Q Consensus 428 al~~~p 433 (625)
+....|
T Consensus 229 ~~~~~~ 234 (234)
T TIGR02521 229 LQKLFP 234 (234)
T ss_pred HHhhCc
Confidence 665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=164.65 Aligned_cols=245 Identities=23% Similarity=0.316 Sum_probs=206.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 006937 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN- 257 (625)
Q Consensus 187 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~- 257 (625)
.|.-..+...++..|..+|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666677788999999999999999999999987 5555566667999999999999999999999987431
Q ss_pred cHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 006937 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (625)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 329 (625)
....+...+.++.+++..|...|++++|..++++++++.. .-...+..++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1122335677888889899999999999999999987632 23456888999999999999999999999987
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 330 --------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (625)
Q Consensus 330 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 393 (625)
++.-+..+.++|.+|..+|++++|.++|++|+.+. +.....+..+|..+.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 23447789999999999999999999999999874 23356889999999999999999999999
Q ss_pred HHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 394 AIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 394 al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
+..+ .|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8876 3555678999999999999999999999998853
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=162.97 Aligned_cols=240 Identities=25% Similarity=0.347 Sum_probs=203.3
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Q 006937 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------R 221 (625)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~ 221 (625)
.+...++..|..+|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34666999999999999999999999998 4544556667999999999999999999999975 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC----
Q 006937 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF-EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN---- 296 (625)
Q Consensus 222 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---- 296 (625)
|....++.+||.+|...|++++|..++++++++.... ......++..+..++.++...+++++|..++++++++.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 4456789999999999999999999999999875441 12233456677788888888999999999999998763
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 006937 297 ----WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI- 363 (625)
Q Consensus 297 ----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 363 (625)
+..+..+.++|.+|..+|++++|.+++++++.+. +.....+..+|..+.+.+++.+|...|.++..+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2345689999999999999999999999999873 334678899999999999999999999998876
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 364 ------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 364 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
.|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455668999999999999999999999999854
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=157.74 Aligned_cols=210 Identities=12% Similarity=0.060 Sum_probs=170.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhc
Q 006937 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (625)
+...+++++|+..+.++++++|.+..+|...+.++..+| ++++++..++++++.+|++..++...+.++..++.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~----- 121 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP----- 121 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc-----
Confidence 334566777888888888888888888888888887777 56788888888888888887777777666655542
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCH----HH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNL----DK 352 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~----~~ 352 (625)
...++++.+++++++.+|++..+|...+.++...|++++|++.+.++++.+|.+..+|+.++.++... |.+ ++
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 12366788888888889999999999999999999999999999999999999999999999888765 323 47
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006937 353 AVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (625)
Q Consensus 353 A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (625)
++.+..+++..+|++..+|..++.++.. +++..+|...+.+++...|++..++..|+.+|...
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888889999999999999999999887 45667899999999888899999999999998763
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-14 Score=133.50 Aligned_cols=385 Identities=14% Similarity=0.058 Sum_probs=289.7
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
.+.-.|+..|.+-++.+....|..++++++..-|.--..|+.....-..+|+...|.+.|++.++..|+ ..+|......
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~f 183 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKF 183 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHH
Confidence 345678899999999999999999999999999999899999999999999999999999999999885 3466666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNLGVVYS 202 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~ 202 (625)
-.+.++.+.|..+|++.+-..|+-.. +...+..-.+.|+..-|...|+++++.-.++. ..+...|..-.
T Consensus 184 ElRykeieraR~IYerfV~~HP~v~~--------wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVLVHPKVSN--------WIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHhhHHHHHHHHHHHHheecccHHH--------HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 66777777777777777777766322 34444444445555555555555554422211 11112222222
Q ss_pred HcCCHHHHHH--------------------------------------------HHHHHHHhCCCCHHHHHHHHHHHHHc
Q 006937 203 ELMQYDTALG--------------------------------------------CYEKAALERPMYAEAYCNMGVIYKNR 238 (625)
Q Consensus 203 ~~~~~~~A~~--------------------------------------------~~~~al~~~~~~~~~~~~la~~~~~~ 238 (625)
.+..++.|.- .|++.++.+|.+.++|+..-.+....
T Consensus 256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV 335 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc
Confidence 2222222222 34455667888889999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhh---hhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHH
Q 006937 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV---KLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYG 311 (625)
Q Consensus 239 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~ 311 (625)
|+.+.-.+.|++++...|....-....-.+|.-+..++ ....+.+.+.++|+.++++-|.. +..|...|....
T Consensus 336 g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 336 GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 99999999999999888764433222222332222221 23678999999999999998864 678999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (625)
Q Consensus 312 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (625)
.+.+...|.+.+-.++...|.+ ........+-.++++++....+|++-++..|.+..+|...|.+-..+|+.+.|...|
T Consensus 416 Rq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred HHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999984 455566677788899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 392 EKAIAANPTYA--EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 392 ~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
+-|+....-+. -.|-.....-...|.++.|...|++.|+..+... +|..
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis 545 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS 545 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence 99998754332 2344445556678999999999999999988766 4443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-17 Score=152.60 Aligned_cols=210 Identities=11% Similarity=0.014 Sum_probs=129.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-
Q 006937 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY- 207 (625)
Q Consensus 130 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~- 207 (625)
++.++|+..+.++++++|++..++. ..+.++...| ++++++..++++++.+|++..+|...+.++...|+.
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~-------~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWH-------FRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHH-------HHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 4445555555555555555554422 2222223333 345566666666666666666666666665555542
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHH
Q 006937 208 -DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (625)
Q Consensus 208 -~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (625)
++++.+++++++.+|.+..+|...+.++...|+++++++++.++++.+|.+..++...+.++..++..-......++++
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 4556666666666666666666666666666666666666666666666666666666555544322100112345677
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 287 AYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (625)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 346 (625)
.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.+..++..|+.+|..
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 78888888888888888888888877 3445667777777777777777777777777764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-15 Score=136.66 Aligned_cols=374 Identities=15% Similarity=0.097 Sum_probs=252.0
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHh--------------cCC-
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK--------------LDP- 113 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p- 113 (625)
..-+..|.+++..|+|++|+..|+-+...+.-+.+.+.++|-|++-+|.|.+|.....++-+ ++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 34556788888888888888888887776666777888888888888888888776554421 110
Q ss_pred -----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 006937 114 -----------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (625)
Q Consensus 114 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~ 182 (625)
+..+-...++.+.+..-.|.+|++.|++++..+|+.... -..++.+|++..-++-+.+.+.-
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al-------NVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL-------NVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh-------HHHHHHHHHhcchhhhHHHHHHH
Confidence 111223445555666667777777777777766664332 44566777777777777777777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------HHhCC----CCHHHHHH
Q 006937 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA----------------------------ALERP----MYAEAYCN 230 (625)
Q Consensus 183 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------------------------l~~~~----~~~~~~~~ 230 (625)
.++..|+++.+...++...++.=+-..|..-.... ++.-| .-|++..+
T Consensus 211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 77777777777666666555432222222111111 11112 13567777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Q 006937 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGV 308 (625)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~ 308 (625)
+...|.++++..+|+...+. +.|..+..+...+.+...+|.-........-|...|+-.-+.. -+.......++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 77788888888888777653 5677777777777777777655444444555555554332211 122234556777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHcCCHHHH
Q 006937 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAA 387 (625)
Q Consensus 309 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A 387 (625)
+++...++++.+.++...-....++....+++|..+...|++.+|.+.|-+.-..+ .+.......++.||...+.++-|
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 77888889999999988888888888888999999999999999999998776555 33445667889999999999988
Q ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 388 AEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 388 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
...+-+. ..|. .-..+..+|..+.+.+++--|.+.|...-.++|+
T Consensus 448 W~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 448 WDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 8776542 1222 2345566788888899998888999888888886
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-15 Score=134.76 Aligned_cols=386 Identities=16% Similarity=0.127 Sum_probs=255.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCH-HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 006937 56 NILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (625)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (625)
+-++...+|..|+.+++-.+..+.+.. ..-..+|.|++.+|+|++|+..|.-+.+.+.-+.+.+..++.+++-.|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 456788999999999998776554433 5677899999999999999999999988777788899999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (625)
Q Consensus 135 A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 214 (625)
|...-.++ |+++-... +++.++ .+.++-++-.. |...+. +..+-...++.+.+..-.|++|++.|
T Consensus 110 A~~~~~ka----~k~pL~~R----Llfhla---hklndEk~~~~-fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIR----LLFHLA---HKLNDEKRILT-FHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHhhC----CCChHHHH----HHHHHH---HHhCcHHHHHH-HHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 98877765 44443211 122222 23344333222 222221 12244556677777777777777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh-----------cCCHH
Q 006937 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL-----------EGDIN 283 (625)
Q Consensus 215 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~ 283 (625)
.+.+..+|+....-..++.+|.++.-++-+.+.+.-.+...|+++.+....+..++++-.-... ...+.
T Consensus 175 krvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 175 KRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred HHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 7777777777777777777777777777777777777777777776666555554443210000 01112
Q ss_pred HHHHHHHH----------HHhhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 284 QGVAYYKK----------ALYYNWH----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (625)
Q Consensus 284 ~A~~~~~~----------~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 349 (625)
.+..+++. +++.-|. .+++..++...|..+++..+|+...+ +++|..+.-+...|.+....|+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQ 331 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhh
Confidence 22222221 1222222 35678888888888888888887765 4578888888888888887776
Q ss_pred HHHHHHHHHHHHc---c------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006937 350 LDKAVECYQMALS---I------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420 (625)
Q Consensus 350 ~~~A~~~~~~al~---~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 420 (625)
--...+.++-|-+ + .-+.......++.+++-..++++.+.++...-...-++....+++|+++...|++.+
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHH
Confidence 5444444333322 1 112233456677777777888888888887777777777788888888888888888
Q ss_pred HHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHH
Q 006937 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460 (625)
Q Consensus 421 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (625)
|.+.|-+.-...-.+. ...-.+++.+|+..+.+.-+|+.
T Consensus 412 aEelf~~is~~~ikn~-~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNK-ILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHhhhcChhhhhh-HHHHHHHHHHHHhcCCchHHHHH
Confidence 8888876654332222 33344577788877776665554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-15 Score=150.76 Aligned_cols=211 Identities=17% Similarity=0.048 Sum_probs=147.6
Q ss_pred CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 006937 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (625)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 154 (625)
+|+.+.++..+|..+...|+.+++...+.++.+..|.+ .+.....+.++...|++++|...++++++..|++.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68888888888888888888888888888887776644 445667788888888888888888888888888775432
Q ss_pred HHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006937 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (625)
Q Consensus 155 ~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 234 (625)
. +..+..++ ...+....+.+.+......+|.....+..+|.++...|++++|+..++++++..|+++.++..+|.+
T Consensus 82 ~-~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLG---DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhc---ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 2 11222222 1234444455554444455677777778888888999999999999999999988888888888999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 235 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
+...|++++|+.++++++...|..+.. ....+..++.++...|++++|+..+++++..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~---~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSML---RGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcch---hHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999999999988888877642211 1122333444444455555555555555433
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-15 Score=148.53 Aligned_cols=309 Identities=15% Similarity=0.076 Sum_probs=229.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 006937 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (625)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (625)
+|+.+.++..+|.++...|+.+.+...+.++.+..+.+.... ......+..+...|++++|...++++++.+|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER----ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 799999999999999999999999999999998888664432 2244567888899999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 006937 192 PAYYNLGVVYSELMQY----DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (625)
Q Consensus 192 ~~~~~la~~~~~~~~~----~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (625)
.++.. +..+...|++ ..+.+.+.......|.....+..+|.++...|++++|+..++++++..|++......++.
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 87775 5555555544 444444444335667778888899999999999999999999999999998655554444
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHH---
Q 006937 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACN--- 338 (625)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~--- 338 (625)
++...|++++|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|. ......
T Consensus 157 -------i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T cd05804 157 -------VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAA 229 (355)
T ss_pred -------HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHH
Confidence 44457899999999999999876433 35668999999999999999999999876662 222111
Q ss_pred HHHHHHHHcCCHHHHHHH--H-HHHHccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHH
Q 006937 339 NLGVIYKDRDNLDKAVEC--Y-QMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---------YAEA 404 (625)
Q Consensus 339 ~la~~~~~~~~~~~A~~~--~-~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~ 404 (625)
.+...+...|....+..+ + .......+. ........+.++...|+.++|...++........ ...+
T Consensus 230 ~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 309 (355)
T cd05804 230 SLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGL 309 (355)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhH
Confidence 222333334433333332 1 111111121 2233346888889999999999999887664322 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 405 YNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
....+.++...|++++|.+.+..++.+.
T Consensus 310 ~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 310 PLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-16 Score=143.51 Aligned_cols=202 Identities=14% Similarity=0.118 Sum_probs=162.9
Q ss_pred CCCCCCccccccccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHhHHHHHHHhcCHHHHHHHHHH
Q 006937 31 GTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSE 107 (625)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~ 107 (625)
+|++.......+.....++.++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~ 95 (235)
T TIGR03302 16 GCSSKKKKEADPVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADR 95 (235)
T ss_pred hccCCcccccCCcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4555433333345567889999999999999999999999999999999876 6889999999999999999999999
Q ss_pred HHhcCCCcHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHH
Q 006937 108 AVKLDPQNAC---AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDG 176 (625)
Q Consensus 108 al~~~p~~~~---~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A 176 (625)
+++..|+++. +++.+|.++... |++++|++.|++++..+|++......+ ..++.... .
T Consensus 96 ~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~~~-------~ 164 (235)
T TIGR03302 96 FIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYLRN-------R 164 (235)
T ss_pred HHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHHHH-------H
Confidence 9999998776 689999999876 889999999999999999987653222 11111110 0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLA 253 (625)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (625)
.......+|.++...|++.+|+..++++++..|+. +.+++.+|.++...|++++|..+++.+..
T Consensus 165 -------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 -------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 01234577888999999999999999999887654 57899999999999999999998888776
Q ss_pred cCC
Q 006937 254 VSP 256 (625)
Q Consensus 254 ~~~ 256 (625)
..|
T Consensus 232 ~~~ 234 (235)
T TIGR03302 232 NYP 234 (235)
T ss_pred hCC
Confidence 655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-14 Score=149.19 Aligned_cols=160 Identities=13% Similarity=0.057 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006937 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (625)
Q Consensus 284 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (625)
+++.-........|.+++++.+||.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 33333344445578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 006937 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (625)
Q Consensus 364 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (625)
+|+++..++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+.+++
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877666655543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-13 Score=138.12 Aligned_cols=249 Identities=12% Similarity=0.027 Sum_probs=160.6
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
.+.++-.+.++...|++++|++.+++....-.+....+-.+|.++..+|++++|...|...++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46677888888999999999999988877778888888889999999999999999999999999998888888777763
Q ss_pred HcC-----CHHHHHHHHHHHHhcCCCCHHHH-------------------------------------------------
Q 006937 128 DEG-----RLVEAAESYHKALSADPSYKPAA------------------------------------------------- 153 (625)
Q Consensus 128 ~~g-----~~~~A~~~~~~al~~~~~~~~~~------------------------------------------------- 153 (625)
... +.+.-..+|++.....|......
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 222 45555666666655554421110
Q ss_pred ---------------------------HHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 154 ---------------------------ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 154 ---------------------------~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
..+..+++.++..+...|++++|+++++++++..|..++.+...|.++...|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 00112234445555555666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH--HHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE--IAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
+.+|.+.++.+..+++.+-.+....+..+.+.|+.++|.+.+......+.+.. ..-....+.....|..+...|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 66666666666665555555555555555566666666555555443331111 1111223344566777888888888
Q ss_pred HHHHHHHHHhhC
Q 006937 285 GVAYYKKALYYN 296 (625)
Q Consensus 285 A~~~~~~~l~~~ 296 (625)
|++.|..+.+..
T Consensus 324 ALk~~~~v~k~f 335 (517)
T PF12569_consen 324 ALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHH
Confidence 888888777653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-13 Score=123.10 Aligned_cols=299 Identities=13% Similarity=0.052 Sum_probs=211.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Q 006937 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVV 200 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~ 200 (625)
-|..-+..|+|.+|.....+.-+..+...-. +..-+....+.|+++.+-.++.++-+..++ ...+....+.+
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~-------~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLA-------YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHH-------HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 3444556677777777777765555443332 444556666677777777777777776333 34566677777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-HhhHHHHHHHhchhhhhc
Q 006937 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA-KNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 279 (625)
....|++..|.....++++..|.++.++.....+|...|++.+...++.+.-+..--+... ...--.++..+-+-....
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 7778888888888888888888888888777888888888887777777665543322211 111111111111001111
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
+..+.-..+++..-..-..++.....++.-+..+|+.++|.+....+++..-+.. ....++ ...-++...=++..++
T Consensus 243 ~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 243 NGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEK 319 (400)
T ss_pred ccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHH
Confidence 1222222344444444445678888899999999999999999999998765533 222222 2456788999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 360 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
.++..|+++..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.++.++.+
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887 777899999999999999999999999854
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-13 Score=131.22 Aligned_cols=336 Identities=15% Similarity=0.059 Sum_probs=237.6
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 006937 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (625)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 163 (625)
.++.--..+...|+|++|+....+++...|++..++...-.++.+.++|++|+...++-....-.+ ...+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~--------~~~fEK 85 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN--------SFFFEK 85 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc--------hhhHHH
Confidence 334444456678999999999999999999999999999999999999999996554432211111 113577
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Q 006937 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER---------------------- 221 (625)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------------- 221 (625)
+.|.++.+..++|+..++ ..++.+..+....|.+++++|+|++|+..|+..++.+
T Consensus 86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 888999999999999998 4566677788999999999999999999999885422
Q ss_pred --------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 222 --------PM-YAEAYCNMGVIYKNRGDLESAIACYERCLAV--------SPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 222 --------~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
|. ..+.+++.+.++...|+|.+|++.+++++++ +.+..+....+..+...++.++...|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 11 4567899999999999999999999999443 233355667778888899999999999999
Q ss_pred HHHHHHHHHhhCCCCHHH-------------------------------------------------HHHHHHHHHhcCC
Q 006937 285 GVAYYKKALYYNWHYADA-------------------------------------------------MYNLGVAYGEMLK 315 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~-------------------------------------------------~~~la~~~~~~~~ 315 (625)
|...|...+..+|.+... +.+.+.+.+..+.
T Consensus 243 a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999887765422 1112222222222
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (625)
Q Consensus 316 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (625)
-+.+.+.....-...|....-.........+...+.+|.+++....+.+|.. ..+...++.+...+|+++.|++.+...
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2222222222212223322222223333333337888899999888888887 668888999999999999999999833
Q ss_pred H--------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 395 I--------AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 395 l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
+ +.. ..+.+-..+-..+.+.++.+-|...+.+++..
T Consensus 403 ~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~ 446 (652)
T KOG2376|consen 403 LESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKW 446 (652)
T ss_pred hhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 3 221 22444445555667777766666666666654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-15 Score=137.61 Aligned_cols=295 Identities=22% Similarity=0.269 Sum_probs=215.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh------CCCCHHHHH
Q 006937 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYY 195 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~ 195 (625)
-|.-+++.|+....+..|+.+++...++.. .+..+|..+|..|+..++|++|+++-..-+.+ .-..+..--
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~---tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLS---TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHH---HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 356677788888888888888887766543 35667888888888888888888765433322 222345566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGD--------------------LESAIACYE 249 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~ 249 (625)
+||+.+.-.|.|++|+.+..+-+.... ....+++++|.+|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 788888888889888888877665432 235688888888887654 234455555
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 006937 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFY 323 (625)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~ 323 (625)
.-+++..... .....+.++-++|+.|...|+++.|+..-+.-+.+.... ..++.++|.++.-.|+++.|+++|
T Consensus 180 eNL~l~~~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 180 ENLELSEKLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 5554433322 233457788899999999999999999888877665443 347889999999999999999999
Q ss_pred HHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 324 ELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMI 391 (625)
Q Consensus 324 ~~al~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (625)
++.+.+. ...+...+.||..|.-..++++|+.++++-+.+.. ....+++.+|..+..+|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9887652 22366778999999999999999999998887643 23568899999999999999999998
Q ss_pred HHHHHhC-----CC-cHHHHHHHHHHHHHcCCHHH
Q 006937 392 EKAIAAN-----PT-YAEAYNNLGVLYRDAGSISL 420 (625)
Q Consensus 392 ~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~ 420 (625)
++.++.. +. ...+..++...-..+|..+.
T Consensus 339 e~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 339 ELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 8887752 22 23456667766666665443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-12 Score=118.98 Aligned_cols=298 Identities=14% Similarity=0.006 Sum_probs=199.3
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-NACAHTHCGI 124 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 124 (625)
..+......|..-+..|+|.+|.+...+.-+..+.....+..-+.+.-++|+++.|-.++.++-+..++ +.......+.
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 345556677888889999999999999988877777788888889999999999999999999998544 4567788899
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHH---HHHHHHHH-
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---AYYNLGVV- 200 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~la~~- 200 (625)
+....|+++.|.....++++..|.++.. +.....+|...|++.+...++.+.-+..--+.. -+-+.+..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~v-------lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEV-------LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHH-------HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 555667778889999999998887765433211 11111111
Q ss_pred -HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhh
Q 006937 201 -YSELMQ---YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (625)
Q Consensus 201 -~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (625)
+.+..+ .+.-..+.+..-..-.+++.....++.-+...|+.++|.+..+.+++..-+.. +...+-.
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~----- 304 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPR----- 304 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhh-----
Confidence 111222 22222234433333345677788888888889999999999888887765432 1111111
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (625)
Q Consensus 277 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (625)
..-++...-++..++.++..|+++..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|.+.
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHH
Confidence 11345555555555555555555555555555555555555555555555554443 34445555555555555555555
Q ss_pred HHHHH
Q 006937 357 YQMAL 361 (625)
Q Consensus 357 ~~~al 361 (625)
+++++
T Consensus 384 r~e~L 388 (400)
T COG3071 384 RREAL 388 (400)
T ss_pred HHHHH
Confidence 55554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-13 Score=119.63 Aligned_cols=364 Identities=16% Similarity=0.132 Sum_probs=246.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 006937 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (625)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (625)
..+.+..+|++|++++..-.+.+|.+...+..+|.||+...++..|..+|++.-.+.|......+..+..+++.+.+.+|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----------------CCCC----HHHHH-----HHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 006937 136 AESYHKALSA----------------DPSY----KPAAE-----CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (625)
Q Consensus 136 ~~~~~~al~~----------------~~~~----~~~~~-----~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (625)
+......... ..++ ..... .-+....+.|-+.++.|+++.|++-|+.+++...-+
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 8876554331 1100 00000 112235567777888899999999999999888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC-------------------------CHHHHHHHHHHHHHcCCH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALE----RPM-------------------------YAEAYCNMGVIYKNRGDL 241 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~-------------------------~~~~~~~la~~~~~~g~~ 241 (625)
+..-++++.++++.+++..|+++..+.++. .|. -.+++...+.++++.+++
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence 888889999999999999998888777653 332 124566677788888888
Q ss_pred HHHHHHHHHHHhcCCC--cHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 006937 242 ESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 242 ~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 319 (625)
+.|.+.+...--.... ++....+++.. ++ .+++.+...-++-.+.++|--.+...++-.+|++..-|+-|
T Consensus 258 eAA~eaLtDmPPRaE~elDPvTLHN~Al~--n~------~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 258 EAAQEALTDMPPRAEEELDPVTLHNQALM--NM------DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred HHHHHHhhcCCCcccccCCchhhhHHHHh--cc------cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHH
Confidence 8887766543211111 22222333221 11 35677777777778888887778888888888888878777
Q ss_pred HHHHHHHHhhCCCC-----HHHHHHHHHHH-HHcCCHHHHHHHHHHHHccCCCCHHHHHHHH-HHHHH--c---CCHHHH
Q 006937 320 IVFYELAFHFNPHC-----AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNFSQSLNNLG-VVYTV--Q---GKMDAA 387 (625)
Q Consensus 320 ~~~~~~al~~~~~~-----~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~--~---g~~~~A 387 (625)
...+.+ +|+. ....+.+-..+ ...-..++|.+-+.+.-.. ..+-+..++ .+... . ....+|
T Consensus 330 ADvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~---l~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 330 ADVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM---LTEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred HHHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 666543 3332 11222232222 2334555555544443221 111111111 11111 1 113345
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 006937 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (625)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (625)
++.|++++++. ..+....+++|+...++..+.+.|++..+...++..
T Consensus 403 i~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~ 449 (459)
T KOG4340|consen 403 VNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDV 449 (459)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccce
Confidence 55566665542 456777899999999999999999999988777643
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-14 Score=147.70 Aligned_cols=290 Identities=13% Similarity=0.085 Sum_probs=224.5
Q ss_pred HcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 006937 76 EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (625)
Q Consensus 76 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (625)
..+|.+..++..+...+...+++++|+..++.+++..|+...+++.+|.++...+++.++... .++...+.+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------ 96 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------ 96 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc------
Confidence 347889999999999999999999999999999999999999999999999999998777666 555554443
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006937 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (625)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (625)
.++ .+++++...+...+.+..+++.+|.||-++|+.++|...++++++.+|+++.++.++|..|
T Consensus 97 ---------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 97 ---------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred ---------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 334 5566666666667888889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 006937 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (625)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 315 (625)
... +.++|++++.+++... ...+++..+.+++.+.+..+|.+.+.+..+-......-.
T Consensus 161 ae~-dL~KA~~m~~KAV~~~---------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYRF---------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHh-hHHHHHHHHHHHHHHH---------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc
Confidence 999 9999999999998652 124588899999999999999887765544333222211
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 316 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
+..+ ...+.-+-..|...+++++++.+++.+++.+|.+..+...++.+|. +.|.. ...++..+
T Consensus 219 ~~~~--------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l 281 (906)
T PRK14720 219 FTRL--------------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYL 281 (906)
T ss_pred cchh--------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHH
Confidence 2222 3445556677888889999999999999999999999999999887 34433 44444444
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
++. .+--....+..|+..|++.+..+|.+--.+
T Consensus 282 ~~s-----------~l~~~~~~~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 282 KMS-----------DIGNNRKPVKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred HHh-----------ccccCCccHHHHHHHHHHHeeecCCCEEEE
Confidence 431 121222466888899999998888775443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=126.99 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=81.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 321 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
..++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4556666666553 4456666666666666666666666666666666666776666677777777777777766676
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 006937 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (625)
++.+++++|.++..+|++++|+..|++++++.|+++..+.++..+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 667777777777777777777777777777777666666554333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=134.59 Aligned_cols=181 Identities=17% Similarity=0.076 Sum_probs=146.0
Q ss_pred CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 006937 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (625)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 154 (625)
++..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|++....
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~- 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD- 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH-
Confidence 455778999999999999999999999999999999876 5789999999999999999999999999999877642
Q ss_pred HHHHHHHHhHHHHHHh--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006937 155 CLAIVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (625)
Q Consensus 155 ~~a~~~~~l~~~~~~~--------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 226 (625)
.+++.+|.++... |++++|++.|++++..+|++...+..+..+....+ . ...
T Consensus 108 ---~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~ 167 (235)
T TIGR03302 108 ---YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAG 167 (235)
T ss_pred ---HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHH
Confidence 2356666666655 78999999999999999998766543332222111 0 012
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHhhHHHHHHHhchhhhhc
Q 006937 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~l~~~~~~~ 279 (625)
....+|.++...|++.+|+..++++++..|+. ..++..++.++..+|+.....
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 34578899999999999999999999997764 478899999999988765443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-12 Score=147.49 Aligned_cols=385 Identities=12% Similarity=-0.016 Sum_probs=275.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHc
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQNACAHTHCGILYKDE 129 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~ 129 (625)
....|..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+- .....++......+.++...
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 345567788899999888766554111 1122345556777778888887777665431 11123445567788888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH
Q 006937 130 GRLVEAAESYHKALSADPSYK--PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYS 202 (625)
Q Consensus 130 g~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~ 202 (625)
|++++|...+..+....+... ......+.+...++.++...|++++|...+++++...+.. ..+...+|.++.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 999999999998876533211 0111124445567888899999999999999999854432 235677899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHhchh
Q 006937 203 ELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTK 275 (625)
Q Consensus 203 ~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~ 275 (625)
..|++++|...+++++..... ...++..+|.++...|++++|...+++++........ .......++..++.+
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 999999999999999875332 1346678899999999999999999999876432210 001112234456777
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHH----HHHHHH
Q 006937 276 VKLEGDINQGVAYYKKALYYNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEAC----NNLGVI 343 (625)
Q Consensus 276 ~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~----~~la~~ 343 (625)
+...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.... .... ......
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 77889999999999998875332 24566778999999999999999999997763321 1111 112344
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHH
Q 006937 344 YKDRDNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYR 413 (625)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~ 413 (625)
+...|+.+.|..++.......+... ..+..++.++...|++++|...+++++.... ....++..+|.++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 5568999999999887665432222 2256889999999999999999999988621 23467889999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCh
Q 006937 414 DAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
..|+.++|...+.+++++.....
T Consensus 743 ~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HcCCHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999876543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-15 Score=124.56 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=119.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 006937 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (625)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (625)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788899988874 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006937 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (625)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (625)
+++.+++++|.++...|++++|+..|+++++..|+++..+.+++.+...+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-12 Score=131.74 Aligned_cols=312 Identities=12% Similarity=0.031 Sum_probs=220.6
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 160 (625)
+.+.++....++...|++++|++.+++....-.+....+-..|.++..+|++++|...|...+..+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45778888999999999999999999988888899999999999999999999999999999999999988754443332
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006937 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (625)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~~~~~~~~~~la~~~~~~g 239 (625)
.... -....+.+.-...|++.....|...... .+...+..-..+.. +..++...+.. .-|.+...+-.+|....
T Consensus 83 g~~~--~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQL--QLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPE 157 (517)
T ss_pred hhhc--ccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChh
Confidence 1111 0112356777888888888787643332 22222222223433 33344444433 45566666666666444
Q ss_pred CHHHHHHHHHHHHhc---CCC----c---HHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 240 DLESAIACYERCLAV---SPN----F---EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (625)
Q Consensus 240 ~~~~A~~~~~~al~~---~~~----~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 309 (625)
+..-...++...... ... . ......+..+++.++..+...|++++|+++++++++..|..++.+...|.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari 237 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 433333333333221 100 0 111222344566667777778889999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--C-------HHHHHHHHHHHHH
Q 006937 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F-------SQSLNNLGVVYTV 380 (625)
Q Consensus 310 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~-------~~~~~~la~~~~~ 380 (625)
+...|++.+|...++.+-.+++.+-.+....+..+.+.|+.++|.+.+..-...+.+ . .......|.+|.+
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888888888888999999998888776554421 1 1234467888888
Q ss_pred cCCHHHHHHHHHHHHHh
Q 006937 381 QGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 381 ~g~~~~A~~~~~~al~~ 397 (625)
.|++..|++.|..+.+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 99999998888888775
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-15 Score=134.90 Aligned_cols=270 Identities=24% Similarity=0.302 Sum_probs=210.7
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHH
Q 006937 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCN 230 (625)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~ 230 (625)
..-|.-+++.|+....+..|+.+++...++ ..+|..||+.|+.+++|++|+++-..-+.+ .-..+...-+
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 344677788899999999999999997775 346788999999999999999976543322 2234566778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCC--------------------HHHHHHHHH
Q 006937 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAYYK 290 (625)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 290 (625)
+|.++.-.|.+++|+.+..+-+....... .....+.+++++|.+|...|+ ++.|.++|.
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLg-Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELG-DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHh-HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 99999999999999999988876654322 233446677777777765543 355666666
Q ss_pred HHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 291 KALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 291 ~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
.-+++.... ..++-++|..|+-+|+|+.|+..-+.-+.+... .-.++.++|.++.-.|+++.|+++|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 666554332 346788999999999999999998877766332 25688999999999999999999999
Q ss_pred HHHccC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 359 MALSIK----P--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYE 426 (625)
Q Consensus 359 ~al~~~----~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (625)
+.+.+. . ..+...+.+|..|.-..++++|+.++.+-+.+.. ....+++.||..+-.+|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 987652 2 2355788999999999999999999999887633 235788999999999999999999988
Q ss_pred HHHhc
Q 006937 427 QCLKI 431 (625)
Q Consensus 427 ~al~~ 431 (625)
+.+++
T Consensus 340 ~hl~~ 344 (639)
T KOG1130|consen 340 LHLRS 344 (639)
T ss_pred HHHHH
Confidence 88775
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-14 Score=125.06 Aligned_cols=125 Identities=22% Similarity=0.250 Sum_probs=118.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 006937 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAE 389 (625)
Q Consensus 313 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~g~--~~~A~~ 389 (625)
.++.++++..++++++.+|++...|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 006937 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (625)
Q Consensus 390 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (625)
.++++++.+|++..+++.+|.++...|++++|+.+|++++++.|.+.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999988653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-13 Score=116.07 Aligned_cols=174 Identities=17% Similarity=0.123 Sum_probs=162.1
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355 (625)
Q Consensus 276 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 355 (625)
....++..-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+..++...--+...+|+.-+|++
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence 33467999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC
Q 006937 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAYEQCLKID 432 (625)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 432 (625)
.+...++..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++-.+..+|.+++-+| +.+-|.++|.++++++
T Consensus 142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999998887 5778999999999999
Q ss_pred CCChhhhhhHHHHhhhc
Q 006937 433 PDSRNAGQNRLLAMNYI 449 (625)
Q Consensus 433 p~~~~~~~~~~~~~~~~ 449 (625)
|.+..++....++...+
T Consensus 222 ~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 222 PKNLRALFGIYLCGSAL 238 (289)
T ss_pred hHhHHHHHHHHHHHHHH
Confidence 98888888876665554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.8e-12 Score=140.15 Aligned_cols=348 Identities=13% Similarity=-0.019 Sum_probs=256.5
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC---------cHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLE-KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---------NACA 118 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~ 118 (625)
..+...+..+...|++..+..+++.+-. ....++......+.++...|++++|...+..+....+. ....
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 454 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF 454 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH
Confidence 4455567777888888887777665411 11234455677888889999999999999988764321 1334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC------CHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAP 192 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~ 192 (625)
...++.++...|++++|...+++++...+.... ...+.....+|.++...|++++|...+++++..... ...
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWY--YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 556788889999999999999999986554322 223344677888999999999999999999876332 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh
Q 006937 193 AYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (625)
Q Consensus 193 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 264 (625)
++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++......... .
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~--~ 610 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ--Q 610 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch--H
Confidence 5678899999999999999999999875221 23345678899999999999999999998765432211 1
Q ss_pred HHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC---HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---
Q 006937 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAM----YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--- 334 (625)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--- 334 (625)
....+..++.+....|++++|...+.++....... .... ......+...|+.+.|...+.......+...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23455667888888999999999999997653321 1111 1123445568899999999877665332222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 335 -EACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 335 -~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
..+..++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++++...
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 2256789999999999999999999987632 23457889999999999999999999999998654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-13 Score=141.63 Aligned_cols=219 Identities=14% Similarity=0.075 Sum_probs=185.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhH
Q 006937 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (625)
Q Consensus 186 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 265 (625)
.+|.+..++..|...+...+++++|+..++.+++..|+....++.+|.++...+++.++... .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------- 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------- 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-------
Confidence 47889999999999999999999999999999999999999999999999999998888766 666555543
Q ss_pred HHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (625)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 345 (625)
.++ .+++++...+...+.+..+++.+|.+|-++|+.++|...|+++++.+|+++.+++++|..|.
T Consensus 97 --------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 97 --------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred --------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 244 55556665666677788899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH--------------------H
Q 006937 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA--------------------Y 405 (625)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------------~ 405 (625)
.. +.++|+.++.+|+.. +...+++.++.+++.+.+..+|++.+. +
T Consensus 162 e~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~ 226 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLL 226 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHH
Confidence 99 999999999999876 666778888888888888888876543 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (625)
.-+-.+|...+++++++.+++.+++.+|+|..++..+.
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 22337788889999999999999999999988877743
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-11 Score=116.63 Aligned_cols=379 Identities=13% Similarity=0.151 Sum_probs=228.0
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
+..|+...+.+..+|+...-...|+++|..-|- +..+|-..-......+-.+-++..|++.++..|...+ .....
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e---eyie~ 178 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE---EYIEY 178 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH---HHHHH
Confidence 344555555566666666666666666655442 2334444444444555556666666666666665432 22334
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHH-------------------------------HHHHhHHHH
Q 006937 126 YKDEGRLVEAAESYHKALSAD-------PSYKPAAECLAI-------------------------------VLTDLGTSL 167 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~a~-------------------------------~~~~l~~~~ 167 (625)
+...+++++|.+.+...+..+ +.+...|..+.. ++..|+..|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 555666666666666655432 222222222221 233344555
Q ss_pred HHhCChHHHHHHHHHHHhhCCC---CHHHH-----HHHHHHHHHcC-------------CHHHHHHHHHHHH--------
Q 006937 168 KLAGNTQDGIQKYYEALKIDPH---YAPAY-----YNLGVVYSELM-------------QYDTALGCYEKAA-------- 218 (625)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~~~---~~~~~-----~~la~~~~~~~-------------~~~~A~~~~~~al-------- 218 (625)
.+.|.+++|...|++++..--. ...++ +.-..+...++ +.+-.+..|+..+
T Consensus 259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 5555555555555555443110 00000 00000000000 1111222222221
Q ss_pred ----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHH
Q 006937 219 ----LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA-VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (625)
Q Consensus 219 ----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 293 (625)
..+|++...|... +-...|+..+-+..|.++++ .+|... ....+.++..++..|...|+.+.|...|+++.
T Consensus 339 sVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 2234444444333 23334667777777777664 344432 34456677788888888999999999999998
Q ss_pred hhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHcCCHH
Q 006937 294 YYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------------------CAEACNNLGVIYKDRDNLD 351 (625)
Q Consensus 294 ~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------------------~~~~~~~la~~~~~~~~~~ 351 (625)
+..-.. ..+|...|..-....+++.|+.+++.+...-.. +..+|..++......|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 775433 567888888888899999999999888765211 2467778888888889999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHH---HHHHcCCHHHHHHHHH
Q 006937 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGV---LYRDAGSISLAIDAYE 426 (625)
Q Consensus 352 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~---~~~~~g~~~~A~~~~~ 426 (625)
.-...|++.+++.--.|....+.|..+....-++++.+.|++.+.+. |...++|...-. .-..--..+.|...|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999988889999999999999999999999999998885 444455543322 2223347889999999
Q ss_pred HHHhcCC
Q 006937 427 QCLKIDP 433 (625)
Q Consensus 427 ~al~~~p 433 (625)
+|++..|
T Consensus 575 qaL~~Cp 581 (835)
T KOG2047|consen 575 QALDGCP 581 (835)
T ss_pred HHHhcCC
Confidence 9999888
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-13 Score=120.12 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=117.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVE 355 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~--~~~A~~ 355 (625)
.++.++++..++++++.+|++.+.|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 006937 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
.++++++.+|++..++..+|.++...|++++|+.+++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999887543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-10 Score=112.42 Aligned_cols=372 Identities=13% Similarity=0.121 Sum_probs=262.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHH
Q 006937 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-------PQNACAHTHCGIL 125 (625)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~ 125 (625)
..-......+-.+-++..|++.++.+|...+- ....+...+++++|.+.+...+..+ +.+-..|..+..+
T Consensus 143 lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee---yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl 219 (835)
T KOG2047|consen 143 LYLKFVESHGLPETSIRVYRRYLKVAPEAREE---YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL 219 (835)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH---HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence 34445566777889999999999999977544 3455778899999999999887653 4456677777766
Q ss_pred HHHcCCHHH---HHHHHHHHHhcCCCCH-HHHHHHHHHHHHhHHHHHHhCChHH--------------------------
Q 006937 126 YKDEGRLVE---AAESYHKALSADPSYK-PAAECLAIVLTDLGTSLKLAGNTQD-------------------------- 175 (625)
Q Consensus 126 ~~~~g~~~~---A~~~~~~al~~~~~~~-~~~~~~a~~~~~l~~~~~~~~~~~~-------------------------- 175 (625)
..+.-+.-. -..+++..+...++.. ..|..+|..|...|..-....-+++
T Consensus 220 is~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~ 299 (835)
T KOG2047|consen 220 ISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCV 299 (835)
T ss_pred HHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHH
Confidence 655433222 2234455555555432 2344455544443332222111222
Q ss_pred ----------------------HHHHHHHHHh------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 006937 176 ----------------------GIQKYYEALK------------IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE- 220 (625)
Q Consensus 176 ----------------------A~~~~~~~l~------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 220 (625)
....|+..+. .+|++..-|... +-...|+..+-+..|..+++.
T Consensus 300 ~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~v 377 (835)
T KOG2047|consen 300 AAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTV 377 (835)
T ss_pred HHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHcc
Confidence 2222333222 255555555443 334567788888889888763
Q ss_pred CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 221 RPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 221 ~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
+|. ....|..+|..|...|+.+.|...|+++.+..-.. ...++.++...|.......+++.|+.+.+++...
T Consensus 378 dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~---v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 378 DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT---VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc---hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 553 35688999999999999999999999998875443 3356778888888888899999999999988754
Q ss_pred CCC------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 296 NWH------------------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (625)
Q Consensus 296 ~~~------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (625)
-.. ...+|..++.+....|-++.....|++.+++.--.+....+.|..+....-+++|.+.|
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 211 13467788888889999999999999999999889999999999999999999999999
Q ss_pred HHHHccC--CCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 358 QMALSIK--PNFSQSLNNLGVV---YTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 358 ~~al~~~--~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
++.+.+. |...++|...-.. -+.-...+.|..+|+++++..|.. ..++...+..-.+-|--..|+..|++|-.
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999885 4445555543333 233447899999999999988732 24566677777888888899999998766
Q ss_pred cC
Q 006937 431 ID 432 (625)
Q Consensus 431 ~~ 432 (625)
.-
T Consensus 615 ~v 616 (835)
T KOG2047|consen 615 AV 616 (835)
T ss_pred cC
Confidence 43
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-11 Score=105.80 Aligned_cols=185 Identities=17% Similarity=0.150 Sum_probs=143.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 006937 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (625)
Q Consensus 187 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (625)
.++....+-.+..+....|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+...+....
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 34445566667777788889999999999988888998888888899999999999999999999988888776555433
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 346 (625)
.+... +|+..+|++.+...++.++.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..+|.+++.
T Consensus 128 Ailka-------~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 128 AILKA-------QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHHH-------cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33333 45666888888888888888888888888888888888888888888888888888888888887777
Q ss_pred cC---CHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 006937 347 RD---NLDKAVECYQMALSIKPNFSQSLNNLGVVY 378 (625)
Q Consensus 347 ~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 378 (625)
+| ++.-|.++|.++++++|.+..+++.+-.+.
T Consensus 201 ~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 201 QGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 66 566778888888888886666666554443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-12 Score=114.07 Aligned_cols=177 Identities=23% Similarity=0.217 Sum_probs=127.4
Q ss_pred HHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006937 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323 (625)
Q Consensus 244 A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 323 (625)
+...+-.....+|++..+ ..++..+.. .|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..+
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~-------~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYL-------RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHh-------cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344444444455554443 333333333 345555555556656666666666666777788888888888888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 006937 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 324 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
+++....|++.++|..+|.+|.+.|++++|...|.+++++.|+.+.+..++|..+.-.|+++.|..++..+....+.+..
T Consensus 124 rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 124 RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888777777788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~a 428 (625)
+..+++.+....|++.+|...-.+-
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhcccc
Confidence 8888888888888888887765443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-12 Score=114.04 Aligned_cols=177 Identities=17% Similarity=0.154 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 66 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (625)
.+...+-+....+|++..+ ..++..+...|+-+.+.....++...+|.+...+..+|......|++.+|+..++++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3666666667889999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006937 146 DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (625)
Q Consensus 146 ~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 225 (625)
.|++... +..+|.+|.+.|++++|...|.+++++.|+.+.+..++|..+.-.|+++.|..++..+....+.+.
T Consensus 130 ~p~d~~~-------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~ 202 (257)
T COG5010 130 APTDWEA-------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202 (257)
T ss_pred CCCChhh-------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch
Confidence 9999887 778888889999999999999999999999999999999999999999999999999999999899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 226 EAYCNMGVIYKNRGDLESAIACYER 250 (625)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~ 250 (625)
.+..+++.+....|++++|.....+
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999999999999999999887654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-13 Score=130.62 Aligned_cols=226 Identities=19% Similarity=0.169 Sum_probs=185.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 006937 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (625)
Q Consensus 188 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (625)
|........++..+...|-..+|+..+++ ...|.....+|...|+..+|..+..+-++.+|+ + .
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d-~-------~ 458 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD-P-------R 458 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc-c-------h
Confidence 33455667889999999999999999987 467777888999999999999988888884443 3 3
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (625)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 347 (625)
.|..+|++.....-+++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 4555555544444555565555443 3456677777777889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
++++.|.++|..++.++|++.++|.+++..|...|+-.+|...++++++.+-++..+|.|.-.+..+.|.+++|++.|.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHhcCCCC
Q 006937 428 CLKIDPDS 435 (625)
Q Consensus 428 al~~~p~~ 435 (625)
.+.+.-+.
T Consensus 613 ll~~~~~~ 620 (777)
T KOG1128|consen 613 LLDLRKKY 620 (777)
T ss_pred HHHhhhhc
Confidence 88765443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=113.56 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=101.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 321 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
..+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|..++++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
++..++.+|.++...|++++|+..|+++++++|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 888888888888888888888888888888888876543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=121.02 Aligned_cols=117 Identities=29% Similarity=0.473 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (625)
++-+..-|.-+.+.++|.+|+..|.+|++++|.++..|.+.+.+|.++|+++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34556678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhcc
Q 006937 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450 (625)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 450 (625)
.+|++++|++.|+++|+++|++...+.++-.+-.-+.
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988877655544333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=128.10 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=192.3
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 239 (625)
...++..+...|-...|+..|++ ...|-....||...|+..+|..+..+-++ .|.++..|..+|.+.....
T Consensus 401 q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 34577788888999999999988 56777889999999999999999999998 6777888888888887777
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 006937 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 319 (625)
-|++|.++.+..- +.+...+|......++++++.+.++..++++|-....|+.+|.+..+.++++.|
T Consensus 472 ~yEkawElsn~~s-------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 472 LYEKAWELSNYIS-------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHHHhhhhh-------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7777776665432 223444555555678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006937 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (625)
Q Consensus 320 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (625)
.+.|..++...|++.++|++++..|...++-.+|...+++|++.+-++..+|.|.-.+....|.+++|++.+.+.+.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998763
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.9e-12 Score=130.14 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=103.4
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
......|.+++++..+|.+....|.+++|...++.+++..|++..+ ...++.++.+.+++++|+..+++++..
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a-------~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA-------FILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH-------HHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 3344466667777777777777777777777777777777777665 555556666667777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 006937 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (625)
Q Consensus 187 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (625)
+|+++..++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 7777777777777777777777777777777777777777777777777777777777777777776655543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-12 Score=108.77 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=113.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 006937 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (625)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (625)
+.+++++..+|++....+.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 006937 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (625)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (625)
++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999876643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=106.18 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=77.1
Q ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006937 328 HFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (625)
Q Consensus 328 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (625)
.+. ++..+..+.+|..+...|++++|...|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 344 5556666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 407 NLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
++|.|+...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77777777777777777777777665
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-13 Score=117.29 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=103.7
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
..++.+-..|..+++.++|.+|+..|.++|+++|.++..|.++|.+|.++|.++.|++.++.++.++|....+|..+|.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAA 153 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~ 153 (625)
|+.+|++.+|++.|+++++++|++...+
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHHH
Confidence 9999999999999999999999998653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-12 Score=121.36 Aligned_cols=259 Identities=18% Similarity=0.096 Sum_probs=191.8
Q ss_pred HHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006937 166 SLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (625)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 244 (625)
.++..|+|..++...+ ....++ ........+.+++..+|+++..+..+.. ..+....+...++..+...++.+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHH
Confidence 4456799999997776 223333 2355677889999999999877655543 2233345566677766665677777
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006937 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (625)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (625)
+..++..+......... .+....+.++...|++++|++.+.+. .+.+.......++...++++.|.+.++
T Consensus 86 l~~l~~~~~~~~~~~~~-----~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 86 LEELKELLADQAGESNE-----IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHHHHHCCCTS---CHH-----HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhccccccH-----HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77766654332221111 12233445566689999999888764 567888889999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 006937 325 LAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (625)
Q Consensus 325 ~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (625)
.+.+.+.+..-.....+++....| ++.+|...|++..+..+.++..+..++.++..+|++++|.+.++++++.+|+++
T Consensus 156 ~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 156 NMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 999988887777777777777666 699999999999888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhh
Q 006937 403 EAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~ 438 (625)
+++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999998 66778888888899997644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-12 Score=120.81 Aligned_cols=168 Identities=14% Similarity=0.028 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (625)
+......|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+.+.+.+.. ...++.++.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~--l~qLa~awv 174 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI--LTQLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH--HHHHHHHHH
Confidence 445556677777788888888877653 5577777788888889999999988888887766643 333343333
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 006937 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (625)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 350 (625)
.+.. ..+++.+|..+|++..+..+..+..+..++.+++.+|++++|...+++++..+|.++.++.+++.+....|+.
T Consensus 175 ~l~~---g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 175 NLAT---GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHH---TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHh---CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 3210 0234566666666655555555556666666666666666666666666666666666666666665555555
Q ss_pred -HHHHHHHHHHHccCCCCH
Q 006937 351 -DKAVECYQMALSIKPNFS 368 (625)
Q Consensus 351 -~~A~~~~~~al~~~~~~~ 368 (625)
+.+.+++.+....+|+++
T Consensus 252 ~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 252 TEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CHHHHHHHHHCHHHTTTSH
T ss_pred hhHHHHHHHHHHHhCCCCh
Confidence 444455555555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-11 Score=101.46 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=100.9
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+.+-+.++..|..++..|++++|...|+-+...+|.+...|+++|.|+..+|++++|+..|.+++.++|+++..+...|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKP 151 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (625)
|++..|+.+.|.+.|+.++......+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999999998754433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-10 Score=105.48 Aligned_cols=183 Identities=11% Similarity=0.037 Sum_probs=136.3
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHH---HHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---AC 117 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 117 (625)
...+++.++..|..++..|+|++|+..|++++...|....+ .+.+|.++++.+++++|+..+++.++.+|++ +.
T Consensus 28 ~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 28 PDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 34678889999999999999999999999999999988654 4899999999999999999999999999876 45
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHH
Q 006937 118 AHTHCGILYKDEG---------------R---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (625)
Q Consensus 118 ~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~ 179 (625)
+++.+|.++...+ + ..+|+..|++.++..|++.-+.... .. +..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~----~r--------------l~~ 169 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDAT----KR--------------LVF 169 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHH----HH--------------HHH
Confidence 7888888764443 1 3568899999999999875432111 00 011
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYER 250 (625)
Q Consensus 180 ~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (625)
++..+ ..--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|......
T Consensus 170 l~~~l------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 170 LKDRL------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 11111 2223456777777777777777777777776653 56677777777777777777766544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-10 Score=100.02 Aligned_cols=279 Identities=19% Similarity=0.162 Sum_probs=214.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
.+..+|.+|++++..-.+.+|.+... +..+|.+|+...++..|..+|++.-...|......+..+..+++.+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAg-------LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAG-------LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 56778999999999999988877665 77788899999999999999999999999988888889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHH
Q 006937 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (625)
+..|+...........-.......-+.+....+++..+....++.-.. +. +....+.|-+..+.|+++.|+
T Consensus 94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~-------Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NE-------ADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cc-------cchhccchheeeccccHHHHH
Confidence 999998887765442223345555566777778888877766654321 11 234455666667789999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC----------------C---------HHHH
Q 006937 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPH----------------C---------AEAC 337 (625)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~----------------~---------~~~~ 337 (625)
+-|+.+++...-.+-.-++++.++++.++++.|+++..+.++. .|. + .+++
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 9999999999888899999999999999999999998887764 232 1 3566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006937 338 NNLGVIYKDRDNLDKAVECYQMALSIKPN-----FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (625)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (625)
+..+-++++.++++.|.+.+.. +-|. ++..+.+++..- ..+++.+...-++-.+.++|--.+.+.++-.+|
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLlly 320 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLY 320 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 7778888999999988776543 3332 355677776543 346677788888888888997778888998899
Q ss_pred HHcCCHHHHHHHH
Q 006937 413 RDAGSISLAIDAY 425 (625)
Q Consensus 413 ~~~g~~~~A~~~~ 425 (625)
.+..-++-|.+.+
T Consensus 321 CKNeyf~lAADvL 333 (459)
T KOG4340|consen 321 CKNEYFDLAADVL 333 (459)
T ss_pred hhhHHHhHHHHHH
Confidence 9887777776654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.8e-10 Score=105.30 Aligned_cols=156 Identities=23% Similarity=0.238 Sum_probs=139.2
Q ss_pred CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
+|....+++..+..++..|++++|+..+...++..|+|+..+...+.++...|+..+|.+.+++++...|.....
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l----- 376 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL----- 376 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH-----
Confidence 377889999999999999999999999999999999999999999999999999999999999999999998554
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006937 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (625)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 237 (625)
..++|..+.+.|++.+|+..++..+..+|+++..|..|+..|..+|+-.+|... .+..+..
T Consensus 377 --~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~ 437 (484)
T COG4783 377 --QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYAL 437 (484)
T ss_pred --HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHh
Confidence 677788888889999999999999999999999999999999999987776544 4566778
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 006937 238 RGDLESAIACYERCLAVSPN 257 (625)
Q Consensus 238 ~g~~~~A~~~~~~al~~~~~ 257 (625)
.|++++|+..+..+.+....
T Consensus 438 ~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 438 AGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred CCCHHHHHHHHHHHHHhccC
Confidence 89999999999998877643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-09 Score=104.01 Aligned_cols=327 Identities=17% Similarity=0.182 Sum_probs=221.5
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHH--------HHHhc---CCCcHHHHHHHHHHH
Q 006937 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS--------EAVKL---DPQNACAHTHCGILY 126 (625)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~---~p~~~~~~~~la~~~ 126 (625)
|...|+.+.|.+..+-+- +..+|-++|....+..+.+-|.-++- ++++. +|+ +.-...+.+.
T Consensus 738 yvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHH
Confidence 345688888877766542 34678888888777777766655442 12221 333 3334567778
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
...|..++|..+|++.-+ +-.+-..|...|.+++|.++-+.-=.+ .--..|++.|..+...++
T Consensus 811 ieLgMlEeA~~lYr~ckR---------------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhcc
Confidence 889999999999998755 333455677789999998876542222 124578899999999999
Q ss_pred HHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 006937 207 YDTALGCYEKA----------ALERP----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (625)
Q Consensus 207 ~~~A~~~~~~a----------l~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (625)
.+.|+++|+++ +..+| .+...|...|..+...|+.+.|+.+|..+-.
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------------- 940 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------------- 940 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------------
Confidence 99999999986 23333 3466788889999999999999999988643
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCC-------
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHC------- 333 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~------- 333 (625)
++.+-++..-+|+.++|-.+.++. .+..+.+.+|+.|...|++.+|+..|.++-.. ...+
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 444555666677888887766543 45667788888888888888888888766433 1111
Q ss_pred -------HHHHHHHHHHHHHcC-CHHHHHHHHHHH------Hc-----------------cCC-CCHHHHHHHHHHHHHc
Q 006937 334 -------AEACNNLGVIYKDRD-NLDKAVECYQMA------LS-----------------IKP-NFSQSLNNLGVVYTVQ 381 (625)
Q Consensus 334 -------~~~~~~la~~~~~~~-~~~~A~~~~~~a------l~-----------------~~~-~~~~~~~~la~~~~~~ 381 (625)
+.-....|..|...| +...|..+|.+| ++ ++| .++..+..-+..+...
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 111222334444444 555555554432 21 133 4577888888889999
Q ss_pred CCHHHHHHHHHHH------HHh----------------CCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 382 GKMDAAAEMIEKA------IAA----------------NPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 382 g~~~~A~~~~~~a------l~~----------------~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (625)
.+|++|...+-.+ +.+ .|. ...++..+|.++.++|.|..|.+-|.+|
T Consensus 1094 ~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 9999998766443 332 111 1357889999999999999998888765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.4e-11 Score=115.24 Aligned_cols=109 Identities=20% Similarity=0.131 Sum_probs=103.1
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (625)
..+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++.++|+++.+++.+|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 129 EGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
.|++++|+..|+++++++|++......+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999988754433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.1e-10 Score=100.31 Aligned_cols=175 Identities=17% Similarity=0.181 Sum_probs=121.8
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH---HHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (625)
.+++.++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467889999999999999999999999999998875 47899999999999999999999999999999864 578
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC
Q 006937 120 THCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (625)
Q Consensus 120 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 188 (625)
+.+|.+++... ...+|+..|+..+...|++..+.... +-+..+...+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~------------------~~l~~l~~~l---- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAK------------------KRLAELRNRL---- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHH------------------HHHHHHHHHH----
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHH------------------HHHHHHHHHH----
Confidence 88888876543 34589999999999999976542110 0011111111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 006937 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESA 244 (625)
Q Consensus 189 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A 244 (625)
..--+.+|..|.+.|.+..|+..++.+++..|+. .+++..++..+..+|..+.|
T Consensus 141 --a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 141 --AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp --HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 2233445667777777777777777777776664 34566666777777766643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-10 Score=107.29 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=143.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 006937 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (625)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (625)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++.++|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCC
Q 006937 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452 (625)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 452 (625)
++.+.|++.+|+..++..+..+|+++..|..||..|..+|+..+|...+.....+.-+-..+......+......+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~ 458 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLG 458 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999999988887777766655555444333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=113.47 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC
Q 006937 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (625)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (625)
+...|..++..|++++|+..|+++++++|++..++..+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34456666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006937 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (625)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (625)
++++|+..|+++++++|++..+...++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 777777777777777777777777766665544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-09 Score=98.45 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=134.0
Q ss_pred CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006937 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA---HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (625)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 156 (625)
.++..++..|..++..|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++..|+++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---- 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---- 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----
Confidence 467788899999999999999999999999999988654 4899999999999999999999999999998776
Q ss_pred HHHHHHhHHHHHHhC------------------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 157 AIVLTDLGTSLKLAG------------------NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (625)
Q Consensus 157 a~~~~~l~~~~~~~~------------------~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 218 (625)
..+++.+|.++...+ ...+|+..|++.++..|++..+ .+|...+..+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l- 170 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL- 170 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH-
Confidence 445666666643332 1356888899999998886432 1222111111
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhchh
Q 006937 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTK 275 (625)
Q Consensus 219 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~~ 275 (625)
...-..--+.+|..|.+.|.+..|+.-++.+++..|+.+ ++...+..++..+|..
T Consensus 171 --~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 171 --KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred --HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 111133445789999999999999999999999998754 5666777788887754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-09 Score=94.90 Aligned_cols=280 Identities=14% Similarity=0.163 Sum_probs=161.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNL 197 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~l 197 (625)
..+...+|.+++++..--..+....+..+. ..+-.++.+++..+.+..++.+++.+-...+.+.... ..+...+
T Consensus 50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds-~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 50 VTAHSEMGRYKEMLKFAVSQIDTARELEDS-DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM 128 (518)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence 344555556555555443333332221111 1223447778888888888999998888877763322 3567779
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHH
Q 006937 198 GVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIA 268 (625)
Q Consensus 198 a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~ 268 (625)
+..+..++.++++++.|+++++...++ ..++..+|.++....++++|.-+..++.++..... ........+
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 999999999999999999999875432 35788999999999999999999999987754322 111122334
Q ss_pred HHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (625)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 348 (625)
++.++..+..+|..-.|.++.+++.++.-...+ .+-.......+|.+|...|
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd----------------------------ra~~arc~~~~aDIyR~~g 260 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGD----------------------------RALQARCLLCFADIYRSRG 260 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC----------------------------hHHHHHHHHHHHHHHHhcc
Confidence 444444455555555555555555433111000 0111233344444444444
Q ss_pred CHHHHHHHHHHHHccCCC------CHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHhCCCc------HHHHHHHHHH
Q 006937 349 NLDKAVECYQMALSIKPN------FSQSLNNLGVVYTVQGKMDA-----AAEMIEKAIAANPTY------AEAYNNLGVL 411 (625)
Q Consensus 349 ~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~------~~~~~~la~~ 411 (625)
+.+.|..-|+.|...-.. ..+++...+.++....-..+ |++.-++++++.... ...+..++.+
T Consensus 261 d~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~i 340 (518)
T KOG1941|consen 261 DLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASI 340 (518)
T ss_pred cHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444444444444433111 12234444444443333222 666666665553221 3456677777
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 006937 412 YRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~ 431 (625)
|..+|.-++=...+.++-+.
T Consensus 341 Yrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 341 YRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHhccchhHHHHHHHHHHHH
Confidence 77777777766666665444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-09 Score=95.69 Aligned_cols=175 Identities=23% Similarity=0.210 Sum_probs=125.0
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
.+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.++..|+++.. .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----D 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h
Confidence 46789999999999999999999999999998875 5689999999999999999999999999999997754 3
Q ss_pred HHHHHhHHHHHHh-----------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006937 158 IVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (625)
Q Consensus 158 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 226 (625)
.+++.+|.+++.. +...+|+..|+..+...|++..+- +|...+..+-. .-..
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~ 142 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHH
Confidence 3455555554433 334577777888887777754331 22221111110 1133
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhchhh
Q 006937 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKV 276 (625)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~~~ 276 (625)
--+.+|..|.+.|.+..|+..++.+++..|+.. .+...+..++..+|...
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 456789999999999999999999999999976 45666777888887543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.19 E-value=6e-10 Score=91.22 Aligned_cols=105 Identities=24% Similarity=0.303 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNL 408 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 408 (625)
..++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+.+|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456777777777788888888888877777665 4577778888888888888888888888777664 5677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
|.++..+|++++|..+++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888776544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-06 Score=88.15 Aligned_cols=200 Identities=18% Similarity=0.078 Sum_probs=138.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (625)
.+.-..-....+++.+|+....++++..|+..-+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+|
T Consensus 12 r~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 12 RLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 34444556788999999999999999999999999999999999999999998888877778888889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH-----------------
Q 006937 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA----------------- 193 (625)
Q Consensus 131 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~----------------- 193 (625)
++++|..+|++++..+|+ .+. +..+-.+|.+.+.|.+-.+.--+..+..|+++..
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eel-------l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EEL-------LYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcc
Confidence 999999999999999998 443 2222333333333333222222222222222111
Q ss_pred -----------------------------HHHHHHHHHHcCCHHHHHHHHHHH-HH-hCCCCHHHHHHHHHHHHHcCCHH
Q 006937 194 -----------------------------YYNLGVVYSELMQYDTALGCYEKA-AL-ERPMYAEAYCNMGVIYKNRGDLE 242 (625)
Q Consensus 194 -----------------------------~~~la~~~~~~~~~~~A~~~~~~a-l~-~~~~~~~~~~~la~~~~~~g~~~ 242 (625)
....-.++..+|++++|...+..- .+ ..+.+..........+...+++.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 111223445567777777777322 22 33334444455566677777888
Q ss_pred HHHHHHHHHHhcCCCc
Q 006937 243 SAIACYERCLAVSPNF 258 (625)
Q Consensus 243 ~A~~~~~~al~~~~~~ 258 (625)
+-.+...+++...+++
T Consensus 244 ~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 244 ELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 7777777777777775
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-09 Score=102.11 Aligned_cols=196 Identities=22% Similarity=0.293 Sum_probs=125.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 006937 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310 (625)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 310 (625)
.|..|...+++++|...|.++.+...... .....+..+...+.++... ++++|+.++++++ .+|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~-~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~--------------~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLG-DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI--------------EIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH--------------HHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH--------------HHH
Confidence 35666777777777777777755432211 1222344444444444333 6666666666654 344
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHccCCC--C----HHHHHHHHHHHHHcCC
Q 006937 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKPN--F----SQSLNNLGVVYTVQGK 383 (625)
Q Consensus 311 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~g~ 383 (625)
...|++..| ...+..+|.+|... |++++|+++|++|+++... . ..++..+|.++...|+
T Consensus 105 ~~~G~~~~a--------------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 105 REAGRFSQA--------------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHCT-HHHH--------------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred HhcCcHHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 555555555 44556678888888 8999999999999887322 1 3477889999999999
Q ss_pred HHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH--hhhccCCCc
Q 006937 384 MDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA--MNYINEGHD 454 (625)
Q Consensus 384 ~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--~~~~~~~~~ 454 (625)
|++|++.|++.....-++ ...++..+.|+...|+...|...+++....+|.........++. +..+..++.
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 999999999988753221 24566778899999999999999999999999887766554332 333445554
Q ss_pred hH
Q 006937 455 DK 456 (625)
Q Consensus 455 ~~ 456 (625)
+.
T Consensus 251 e~ 252 (282)
T PF14938_consen 251 EA 252 (282)
T ss_dssp CC
T ss_pred HH
Confidence 44
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=103.90 Aligned_cols=181 Identities=22% Similarity=0.256 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC--C----cHHHHHHHHHHHHHcCCHHHHH
Q 006937 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--Q----NACAHTHCGILYKDEGRLVEAA 136 (625)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~ 136 (625)
+|++|..+|+++ |.+|...|++++|...|.++....- + -...+...+.++... ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 556666665554 5667777777777777777765421 1 133455556666555 999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh-CChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHH
Q 006937 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-GNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDT 209 (625)
Q Consensus 137 ~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~-~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~ 209 (625)
.+|++++.+.-.... ....+.++..+|.++... |++++|+++|+++++.... ....+..+|.++...|+|++
T Consensus 95 ~~~~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 95 ECYEKAIEIYREAGR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 999999886433222 233477789999999998 9999999999999987321 24567889999999999999
Q ss_pred HHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 006937 210 ALGCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (625)
Q Consensus 210 A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (625)
|++.|++.....-++ ...+...+.+++..|++..|...+++....+|...
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 999999998753221 23456778899999999999999999999988654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-07 Score=84.80 Aligned_cols=297 Identities=19% Similarity=0.109 Sum_probs=206.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q 006937 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVV 200 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~ 200 (625)
-|.+....|+-..|.+.-.++-++-..+.+.. +...-+......|+++.|.+-|+.++. +|+. .-.+..|-.-
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepL-----IhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle 163 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPL-----IHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE 163 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHH-----HHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence 35566677888899888888875555544432 233445666778999999999998875 3432 2223333333
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHhchhhhhc
Q 006937 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 279 (625)
....|..+.|..+-+.+....|.-+.++...-...+..|+++.|+++.+......--... .....+..+...+ .....
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA-~s~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA-MSLLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH-HHHhc
Confidence 457899999999999999999999998888888899999999999998876543211111 1111121121111 11123
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
.+...|...-.++.++.|+....-..-+..++..|+..++-.+++.+.+..|.- . ++.+|....--+.++.-+++
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D----IALLYVRARSGDTALDRLKR 317 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHHH
Confidence 467788888888888888888888888888888888888888888888877652 2 33334433333344444443
Q ss_pred ---HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 006937 360 ---ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLKI 431 (625)
Q Consensus 360 ---al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 431 (625)
...+.|++.+.....+..-+.-|++..|..--+.+....|. ..++..|+.+-... |+-.++..++-++++-
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 34557888888888888888888888888888888888776 55667777777665 8888888888888764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-09 Score=98.69 Aligned_cols=123 Identities=22% Similarity=0.251 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 006937 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIE 392 (625)
Q Consensus 316 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~ 392 (625)
.+.-+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4556666777778888888888888888888888888888888888888888888888888876543 4678888999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
+++..+|++..+.+.||..++..|++.+|...+++.++..|.+..-
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999999999999999999988876543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-08 Score=105.82 Aligned_cols=257 Identities=16% Similarity=0.115 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHhhHHHHHHHhchhhhhcCCHHHHH
Q 006937 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (625)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (625)
.+..+-|++.+..+|+..-.|......+.+.++.++|.+..++++.. ++...+...++-.+|.++-..| |.-+...
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHH
Confidence 34556777888888888888888888888889999999999988854 4555555555555666554443 4566677
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 006937 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (625)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (625)
+.|+++.+... ....+..|..+|...+++++|.++|+..++...+...+|..+|..++.+.+-+.|...+++|++.-|.
T Consensus 1518 kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1518 KVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 78888876543 34578889999999999999999999999998888999999999999999999999999999999888
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 006937 367 --FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (625)
Q Consensus 367 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (625)
+.+.....|.+-++.|+.+.+...|+-.+..+|...+.|..+...-.+.|+.+.+...|++++.+.=.-.....-+-.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999999875433333222222
Q ss_pred HhhhccCCCchHHHHHHHHHHHHH
Q 006937 445 AMNYINEGHDDKLFEAHRDWGKRF 468 (625)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~ 468 (625)
-+.|-...-.++..+..+.-+..+
T Consensus 1677 wLeyEk~~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred HHHHHHhcCchhhHHHHHHHHHHH
Confidence 333433322334444444434333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.6e-10 Score=90.00 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=97.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH 121 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (625)
++.++..|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5678999999999999999999999999998876 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 006937 122 CGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 152 (625)
+|.++...|++++|+..+++++...|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999997654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.8e-09 Score=93.88 Aligned_cols=306 Identities=16% Similarity=0.164 Sum_probs=190.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh----CCC--CHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----DPH--YAP 192 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~~~--~~~ 192 (625)
....|.-++...++++|+..+.+.+..-.+...- -..+-.+..+...+|.+++++..--..+.. +.. ..+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~R----f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGR----FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHH----HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777777777777776643332111 112333445555666666666543333222 111 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 006937 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (625)
Q Consensus 193 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (625)
++.+++..+....++.+++.+-+..+...... ......++..+..++.++++++.|+++++...++.+...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L---- 160 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML---- 160 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee----
Confidence 67777777777777777777776666543222 245556777777777777777777777765443322111
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----------CHHHH
Q 006937 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----------CAEAC 337 (625)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~ 337 (625)
...++..+|.++....++++|.-+..++.++... ...++
T Consensus 161 -------------------------------Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 161 -------------------------------ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred -------------------------------eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 1234555556666666666666666655554211 13456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHH
Q 006937 338 NNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAY 405 (625)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 405 (625)
+.++..+..+|..-.|.++.+++.++. +........+|.+|...|+.+.|..-|+++...... ..+++
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al 289 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEAL 289 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 778888888899999999988887762 334567889999999999999999999999876332 24577
Q ss_pred HHHHHHHHHcCCHHH-----HHHHHHHHHhcCCCC----hhhhhhHHHHhhhccCCCchHHHHHHHH
Q 006937 406 NNLGVLYRDAGSISL-----AIDAYEQCLKIDPDS----RNAGQNRLLAMNYINEGHDDKLFEAHRD 463 (625)
Q Consensus 406 ~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (625)
...+.++....-..+ |+++-++++++...- ........++..|-..|..++.-....+
T Consensus 290 ~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 290 DGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 777888776655555 888888888875433 2233344567777666665554444333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=94.25 Aligned_cols=123 Identities=18% Similarity=0.215 Sum_probs=100.9
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCC--HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHH
Q 006937 59 RSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLV 133 (625)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 133 (625)
+-.+.|..+...+..+++.++.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 44555777777777776666555 5677999999999999999999999999887653 458999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 006937 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (625)
Q Consensus 134 ~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~ 181 (625)
+|+..+++++.+.|.....+..++.++..+|..+...|+++.|+..+.
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 999999999999999998888888888888888778888775554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.8e-09 Score=89.22 Aligned_cols=104 Identities=20% Similarity=0.241 Sum_probs=96.2
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006937 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (625)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 236 (625)
+..++..|..|-..|-+.-|.-.|.+++.+.|+.+.++..+|..+...|+++.|.+.|...++++|.+..+..+.|..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 55578888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHH
Q 006937 237 NRGDLESAIACYERCLAVSPNFEI 260 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~ 260 (625)
--|++.-|.+-+.+..+.+|+++-
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChH
Confidence 999999999999999999998874
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=82.43 Aligned_cols=67 Identities=43% Similarity=0.691 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 006937 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 433 (625)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 433 (625)
++..|..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677777777777777778888888877777777778888888888877 67788888888877776
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-09 Score=95.92 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVEC 356 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~ 356 (625)
...+..+.-++..+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++..+. ...++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 357777888889999999999999999999999999999999999999999999999999999888754 56899999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 006937 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (625)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (625)
+++++..+|.+..+.+.||..++..|+|.+|...++..++..|.+.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999987654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=85.33 Aligned_cols=99 Identities=38% Similarity=0.623 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006937 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (625)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (625)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777777777888888888877777777777777888888888888888888888887777777788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 006937 416 GSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 416 g~~~~A~~~~~~al~~~p~ 434 (625)
|++++|...+.++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888777663
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-09 Score=92.83 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (625)
...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.....+.++|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3444555555555555555555555555554432 2355556666666666666666666666665555555555555
Q ss_pred HHH-------HcCCHH-------HHHHHHHHHHhcCCCChhh
Q 006937 411 LYR-------DAGSIS-------LAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 411 ~~~-------~~g~~~-------~A~~~~~~al~~~p~~~~~ 438 (625)
++. .+|+++ +|+.+|++++..+|++...
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence 555 555544 6666777788888876543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.6e-08 Score=84.27 Aligned_cols=203 Identities=18% Similarity=0.192 Sum_probs=135.4
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 160 (625)
.+..++..|..|-..|-+.-|...|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|.+.-+ .
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya-------~ 136 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-------H 136 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH-------H
Confidence 345677888888889999999999999999999999999999999999999999999999999999988766 5
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006937 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (625)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 240 (625)
.+.|..++.-|++.-|.+-+.+-.+.+|+++---..+-. -...-+..+|...+.+-.+...+....+...+.. .|+
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---Lgk 212 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGK 212 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---Hhh
Confidence 666777777799999999998888888888743222211 2233456666655443333222222333322222 232
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
..+ ...++++..-..++...-..+..+++-+|..+...|+.++|...|+-++..
T Consensus 213 iS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 213 ISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 221 233444444444444444455556666666666666666666666666543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.8e-09 Score=87.05 Aligned_cols=117 Identities=22% Similarity=0.174 Sum_probs=97.2
Q ss_pred hcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHH
Q 006937 312 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD 385 (625)
Q Consensus 312 ~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~ 385 (625)
..++...+...++..++.+|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5788888888888888888887 5677788999999999999999999999877654 347888999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (625)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (625)
+|+..++.. ...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999998663 3344456788889999999999999999999875
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.1e-09 Score=92.12 Aligned_cols=119 Identities=26% Similarity=0.398 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 006937 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374 (625)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 374 (625)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.++++++...|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 345677888888888888888888888888776553 46788888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 375 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
|.++...|+...+...++.++. .+++|.+++++++..+|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 8888888887777766665543 26788999999999999874
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.1e-09 Score=95.21 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=97.9
Q ss_pred cchHhHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC---cHHH
Q 006937 46 FEGKDALSYANIL-RSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACA 118 (625)
Q Consensus 46 ~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 118 (625)
.+....+..|..+ +..|+|++|+..|+++++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4567888888877 66899999999999999999998 579999999999999999999999999998887 4788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 152 (625)
++.+|.++...|++++|...|+++++..|+...+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999999998755
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.3e-10 Score=80.18 Aligned_cols=67 Identities=36% Similarity=0.602 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 006937 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANP 399 (625)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 399 (625)
++..|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45666677777777777777777777777777777777777777777777 57777777777777665
|
... |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.7e-06 Score=77.42 Aligned_cols=385 Identities=13% Similarity=0.073 Sum_probs=244.0
Q ss_pred hHhHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCC---HHHHHhHHHHH-HHhcCHHHHHHHHHHHHhcC---CCc---
Q 006937 48 GKDALSYANILRSRN--KFVDALALYEIVLEKDSGN---VEAHIGKGICL-QMQNMGRLAFDSFSEAVKLD---PQN--- 115 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~~--- 115 (625)
++.++.+|+.+...| +...++++++..+...|.+ +.....+|.++ ....+.+.|...++++..+. |..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 567788888888888 8899999999888877654 34566677664 45678888999998887653 222
Q ss_pred -HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH----------
Q 006937 116 -ACAHTHCGILYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA---------- 183 (625)
Q Consensus 116 -~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~---------- 183 (625)
..+...++.+|.... .+..|...+++++++..+.+.. -...++.++.......++..|++.+.-.
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w---sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ 163 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW---SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFP 163 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhH
Confidence 345677788887776 7888888899998887766532 2334667777777777777777654211
Q ss_pred ---------------------------------Hhh---CCCCH----HHHHHHHH-HHHHcCCHHHHHHHHHHHHH---
Q 006937 184 ---------------------------------LKI---DPHYA----PAYYNLGV-VYSELMQYDTALGCYEKAAL--- 219 (625)
Q Consensus 184 ---------------------------------l~~---~~~~~----~~~~~la~-~~~~~~~~~~A~~~~~~al~--- 219 (625)
.+. +|..- ..+..+-. .|...|+...+...+++.-+
T Consensus 164 ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siq 243 (629)
T KOG2300|consen 164 YLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQ 243 (629)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHh
Confidence 110 11100 11122222 23345555555555544321
Q ss_pred h-CCC------------CHH-----------HHHHHHH--HHHHcCCHHHHHHHHHHHHhcCCCcHH-------HHhhHH
Q 006937 220 E-RPM------------YAE-----------AYCNMGV--IYKNRGDLESAIACYERCLAVSPNFEI-------AKNNMA 266 (625)
Q Consensus 220 ~-~~~------------~~~-----------~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~ 266 (625)
. .+. .+. ++..+-. .-...|-+++|.++-++++........ ......
T Consensus 244 tist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km 323 (629)
T KOG2300|consen 244 TISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKM 323 (629)
T ss_pred ccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 1 110 011 1111111 112346677788777777655322111 111112
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-C--
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYY---NWH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C-- 333 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~---~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~-- 333 (625)
..+..+.-+....|++.+|++....+.+. .|. .+.....+|......+.++.|...|..+.+.-.. +
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 22333344445578999998888777654 333 2456778888888889999999999999887433 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-c-
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-Y- 401 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~- 401 (625)
+.+..++|.+|...++-+.--+.++. +.|.+ ..+++..|...+.++++.||...+.+.++.... +
T Consensus 404 a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~ 480 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL 480 (629)
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence 44556889999998776554444443 33332 336777888888999999999999999987521 1
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 402 ----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 402 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
.-.+..|+.+....|+..++.+..+-++++...-++.
T Consensus 481 ~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di 521 (629)
T KOG2300|consen 481 NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI 521 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc
Confidence 3356678899999999999999999888775444433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-09 Score=83.15 Aligned_cols=99 Identities=31% Similarity=0.432 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (625)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 006937 130 GRLVEAAESYHKALSADPS 148 (625)
Q Consensus 130 g~~~~A~~~~~~al~~~~~ 148 (625)
|++++|...+.++++..|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999987763
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-10 Score=84.06 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=73.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCC--CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 60 SRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (625)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (625)
.+|+|++|+..++++++.+|. +...++.+|.|++..|++++|+..+++ .+.++.+....+.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 006937 138 SYHKA 142 (625)
Q Consensus 138 ~~~~a 142 (625)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=103.62 Aligned_cols=143 Identities=22% Similarity=0.197 Sum_probs=119.0
Q ss_pred hCCCCHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 006937 295 YNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--------NLDKAVECYQMAL 361 (625)
Q Consensus 295 ~~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al 361 (625)
..|.+..+| +..|.-+...++ ...|+.+|+++++++|+++.++..++.++.... +...+....++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345555544 455666655544 789999999999999999999999888776542 3456667777766
Q ss_pred cc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 362 SI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 362 ~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
.+ +|..+.++..+|..+...|++++|...+++++.++|+ ..+|..+|.++...|++++|++.|++|+.++|.++..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 64 7777889999999999999999999999999999994 8899999999999999999999999999999998853
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.5e-07 Score=83.14 Aligned_cols=224 Identities=31% Similarity=0.410 Sum_probs=161.5
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHhhHHHHHHHhchhhhhc
Q 006937 204 LMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLA--VSPNFEIAKNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 204 ~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (625)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+... ..+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-------EALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-------HHHHHHHHHHHHH
Confidence 34455555555555555554 255566666666666666666666666654 233322 2333334444444
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVE 355 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~ 355 (625)
+++..++..+..++...+.........+. ++...|+++.|...+.+++...| .....+...+..+...+++++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 55666666666666666555444444455 78888889999998888877666 356666677777888889999999
Q ss_pred HHHHHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 356 CYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 356 ~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
.+.+++...+. ....+..++..+...+++++|...+..++...|.....+..++..+...+..+++...+.+++...|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999888 68889999999999999999999999999998887777888888888777899999999999999887
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-05 Score=77.04 Aligned_cols=419 Identities=12% Similarity=0.037 Sum_probs=241.7
Q ss_pred ccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-
Q 006937 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH- 121 (625)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~- 121 (625)
..+.+.+.|..+.+.+..+ .+++..+.|++.+...|..+.+|.......+...+|+.-..+|.+++..--+ .+.|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHH
Confidence 3456666676666666655 7777777777777777777777777777777777777777777766653221 233322
Q ss_pred HHHHHHHcCCHHHHHHHHHHH----HhcCCCCHHHHHHHHHHHHHhHHH---------HHHhCChHHHHHHHHHHHhhCC
Q 006937 122 CGILYKDEGRLVEAAESYHKA----LSADPSYKPAAECLAIVLTDLGTS---------LKLAGNTQDGIQKYYEALKIDP 188 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~a~~~~~l~~~---------~~~~~~~~~A~~~~~~~l~~~~ 188 (625)
+..+-...|+...+....-++ +....-+... ..+|...+.. +..+.+.+.-.+.|++++..--
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s----~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKS----YSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCccc----chhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 222333334443333332222 2222212111 1122222221 1222355556667777776433
Q ss_pred CCHHH-HHH-----------HH--HHHHHcCCHHHHHHHHHHHHHh-------CCC-----------CHHHHHHHHHHHH
Q 006937 189 HYAPA-YYN-----------LG--VVYSELMQYDTALGCYEKAALE-------RPM-----------YAEAYCNMGVIYK 236 (625)
Q Consensus 189 ~~~~~-~~~-----------la--~~~~~~~~~~~A~~~~~~al~~-------~~~-----------~~~~~~~la~~~~ 236 (625)
.+.+- |.. .| .+-.....|..|...+++.... +|. ..+.|.++...-.
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 33221 111 11 1122233455666666555432 111 0122333322221
Q ss_pred HcC------C--HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCC-------HHHHHHHHHHHHhhCCC-CH
Q 006937 237 NRG------D--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-------INQGVAYYKKALYYNWH-YA 300 (625)
Q Consensus 237 ~~g------~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~l~~~~~-~~ 300 (625)
..+ . -..-.-.+++++...+-.++.|+..+..+...+.++...|+ .+++..+|++++..... +.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 111 1 11233456777777777888888888888777777666665 45667777777654322 33
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 006937 301 DAMYNLGVAYGEMLK---FDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (625)
Q Consensus 301 ~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (625)
..++.++..-...-+ ++..-..+++++.+...+ .-++..+-..-.+..-.+.|...|.++-+..-....++..-|.
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 344455444333333 677777888888764333 3456666666667777889999999998765444344444444
Q ss_pred H-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhhhhHHHHhhhccCCC
Q 006937 377 V-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRLLAMNYINEGH 453 (625)
Q Consensus 377 ~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~ 453 (625)
+ |...++..-|...|+-.++..++.+..-......+..+|+-..|...|++++.. .|+...-.+...+..- ..-|+
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE-S~vGd 487 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE-SNVGD 487 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH-Hhccc
Confidence 3 567899999999999999999999998888889999999999999999999987 5555544444444322 23456
Q ss_pred chHHHHHHHHHHHHH
Q 006937 454 DDKLFEAHRDWGKRF 468 (625)
Q Consensus 454 ~~~~~~~~~~~~~~~ 468 (625)
-....+.-++....+
T Consensus 488 L~si~~lekR~~~af 502 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHHHHHHHHHhc
Confidence 555555544444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-10 Score=103.91 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=100.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (625)
+-+.|+.|+.+|+|++|+.+|.+.+..+|.|+..+.+.+.+|+++..+..|...+..++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 131 RLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 131 ~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
+..+|.+.++.++++.|++.+....++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 999999999999999999877654443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-08 Score=89.55 Aligned_cols=72 Identities=26% Similarity=0.381 Sum_probs=42.2
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 152 (625)
.+.+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 34455666666666666666666666666554432 3455666666666666666666666666666655544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-09 Score=78.18 Aligned_cols=64 Identities=31% Similarity=0.490 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667777777777777777777777777777777777777777777777777777777777764
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-06 Score=80.33 Aligned_cols=203 Identities=31% Similarity=0.464 Sum_probs=106.0
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALK--IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV-IYK 236 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~-~~~ 236 (625)
....+..+...+.+..+...+...+. ..+.....+...+..+...+++..++..+.+++...+.........+. ++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 33444444555555555555555554 445555555556666666666666666666666555544333333334 555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q 006937 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 316 (625)
..|+++.|...+.+++...|. .. .........+..+...+++
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~----~~----------------------------------~~~~~~~~~~~~~~~~~~~ 183 (291)
T COG0457 142 ELGDYEEALELYEKALELDPE----LN----------------------------------ELAEALLALGALLEALGRY 183 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCC----cc----------------------------------chHHHHHHhhhHHHHhcCH
Confidence 666666666666665543332 00 1122222333334444555
Q ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 317 DMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 317 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
+.|+..+.+++...+. ....+..++..+...+++.+|+..+..++...|.....+..++..+...+.++++...+.+++
T Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555 455555555555555555555555555555555544455555555555555666666666666
Q ss_pred HhCCC
Q 006937 396 AANPT 400 (625)
Q Consensus 396 ~~~p~ 400 (625)
...|.
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 65554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=78.15 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH
Q 006937 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (625)
+.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35677778888888888888888888888888888888888888888888888888887777764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-08 Score=85.32 Aligned_cols=130 Identities=15% Similarity=0.061 Sum_probs=107.5
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT 120 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (625)
.....+..+......++...+...++++++.+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 35566777777788999999999999999999988 5678889999999999999999999999987664 45788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 006937 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (625)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (625)
.++.++...|++++|+..++.. . +... .+.++..+|.++...|++++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~-~--~~~~-----~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQI-P--DEAF-----KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-c--Ccch-----HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8999999999999999999662 1 1111 13346778999999999999999998864
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.5e-07 Score=89.57 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=134.3
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHH--------HHHH---cCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHH
Q 006937 49 KDALSYANILRSRNKFVDALALYE--------IVLE---KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC 117 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~--------~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (625)
..|-.+|.++.+..+.+-|.-++- +++. .+|++ .-...|.....+|..++|+.+|.+.-+
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE--DEAKVAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 356678888888877777765542 2222 24433 333456667889999999999998754
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH----------HhhC
Q 006937 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA----------LKID 187 (625)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~----------l~~~ 187 (625)
+-.+-.+|...|.+++|.+..+.--++. +-..|++.+..+...++.+.|+++|+++ +..+
T Consensus 829 -~DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 829 -YDLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred -HHHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 3456678888999999988766432222 1223777888888889999999999864 2223
Q ss_pred CC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHHH
Q 006937 188 PH----------YAPAYYNLGVVYSELMQYDTALGCYEKAAL---------------------ERPMYAEAYCNMGVIYK 236 (625)
Q Consensus 188 ~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~---------------------~~~~~~~~~~~la~~~~ 236 (625)
|. +...|...|..+...|+.+.|+.+|..+-. ....+..+.+.+|+.|.
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE 978 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence 33 456677789999999999999999988743 23345678899999999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 006937 237 NRGDLESAIACYERCLA 253 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~ 253 (625)
..|+..+|+..|.++..
T Consensus 979 n~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999999887643
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-07 Score=80.54 Aligned_cols=168 Identities=14% Similarity=0.040 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (625)
......-|.++...|++++|++...+. .+.++...-..++.++.+.+-|.+.++++.+++.+. ....++.+|.
T Consensus 108 ~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv 180 (299)
T KOG3081|consen 108 LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWV 180 (299)
T ss_pred HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHH
Confidence 345555677888899999998887763 345666666778888889999999999988876553 3445666666
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 006937 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (625)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 350 (625)
.++. ..+.+.+|.-+|++.-+..+..+.....++.+.+.++++++|...++.++..++++++.+.++..+-...|..
T Consensus 181 ~la~---ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 181 KLAT---GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHhc---cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 5542 1345777777777777767777777777777777777888887777777777777777777777777777766
Q ss_pred HHHHH-HHHHHHccCCCCH
Q 006937 351 DKAVE-CYQMALSIKPNFS 368 (625)
Q Consensus 351 ~~A~~-~~~~al~~~~~~~ 368 (625)
.++.. .+.+....+|+++
T Consensus 258 ~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 258 AEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred hHHHHHHHHHHHhcCCcch
Confidence 55543 4444444556554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.5e-09 Score=84.55 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=98.5
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
..-+..+..|..++..|++++|..+|+-+...+|.+++.++.+|.|+..+++|++|+..|..+..++++++...+..|.|
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKP 151 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (625)
++..|+.+.|+.+|+.++. .|.+..
T Consensus 115 ~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 9999999999999999998 455433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-07 Score=100.17 Aligned_cols=233 Identities=10% Similarity=0.023 Sum_probs=195.7
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 006937 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-RPMY----AEAYCNMGVIYKNRGDLESAIAC 247 (625)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~----~~~~~~la~~~~~~g~~~~A~~~ 247 (625)
-.+..+-|++.+..+|+....|..+...+.+.++.++|.+..++++.. ++.. ..+|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788889999999999999999999999999999999999874 3332 33455555555556777788888
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006937 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (625)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 327 (625)
|+++.+.+.. -.++..+..+|...+.+++|.++++..++...+....|..++..++.+++-++|...+.+|+
T Consensus 1520 FeRAcqycd~--------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1520 FERACQYCDA--------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHhcch--------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9998876543 23566777788888999999999999999999999999999999999999999999999999
Q ss_pred hhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHH
Q 006937 328 HFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAE 403 (625)
Q Consensus 328 ~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 403 (625)
+.-|. +.+.....|.+-++.|+.+.+...|+..+.-+|.-.+.|.-+...-.+.|+.+.+...|++++.+. |....
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 99888 788899999999999999999999999999999999999999999999999999999999999874 44444
Q ss_pred HHHHHHHHHH
Q 006937 404 AYNNLGVLYR 413 (625)
Q Consensus 404 ~~~~la~~~~ 413 (625)
.++..=.-|.
T Consensus 1672 fffKkwLeyE 1681 (1710)
T KOG1070|consen 1672 FFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHHH
Confidence 4444333333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.9e-09 Score=96.06 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
++.+++.|+.++++|.+|+..+.++|.++|+|..+++..|.++..+|+++.|+..|+++++++|+|..+...+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 5566666666666666666666666666666666666666666666666666666666666666665555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.8e-10 Score=83.18 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=55.1
Q ss_pred cCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 347 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (625)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (625)
+|++++|+.+++++++..|. +...++.+|.++++.|++++|+.++++ .+.++.+....+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777777664 344566677777777777777777777 666666666777777777777777777777
Q ss_pred HHHH
Q 006937 425 YEQC 428 (625)
Q Consensus 425 ~~~a 428 (625)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-07 Score=80.69 Aligned_cols=257 Identities=16% Similarity=0.094 Sum_probs=180.6
Q ss_pred HHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006937 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (625)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 244 (625)
+-++..|+|..++..-++.-... ........+.+.|..+|++...+......- .....+...++.....-++.++-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence 34555689988888777655443 667778888899999998876655443322 12234445555555555555555
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006937 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (625)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (625)
+.-+.+.+........ ......-+.++...+++++|++..... ...++...-..++.++.+.+-|.+.++
T Consensus 92 ~~~l~E~~a~~~~~sn-----~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 92 LASLYELVADSTDGSN-----LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred HHHHHHHHHhhccchh-----HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444332222111 112223345556678999999887763 345666667788889999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 325 LAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 325 ~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
++.+++.+. .+..||..+.+ .+++.+|.-+|+..-+..|..+..+..++.|...+|++++|...++.++..+++
T Consensus 162 ~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 162 KMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred HHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 998887653 33344444433 347889999999999888888999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCChh
Q 006937 401 YAEAYNNLGVLYRDAGSISLAI-DAYEQCLKIDPDSRN 437 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 437 (625)
+++.+.++-.+-...|...++. ++..+....+|+.+-
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999999988888876654 555666667777653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.3e-09 Score=85.99 Aligned_cols=106 Identities=9% Similarity=0.031 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006937 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (625)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (625)
.++..+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34445566666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 410 VLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
.||..+|+.++|+.+|+.+++ .|.+.
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 777777777777777777776 34433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-08 Score=94.75 Aligned_cols=160 Identities=9% Similarity=0.008 Sum_probs=103.8
Q ss_pred hHHHHHHHHHhCC---CHHHHHHHHHHHH---HcCCCCHHHHHhHHHHHHHh---------cCHHHHHHHHHHHHhcCCC
Q 006937 50 DALSYANILRSRN---KFVDALALYEIVL---EKDSGNVEAHIGKGICLQMQ---------NMGRLAFDSFSEAVKLDPQ 114 (625)
Q Consensus 50 ~~~~~a~~~~~~g---~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 114 (625)
.++..|...+..+ ..+.|+.+|.+++ +.+|+.+.++..++.|++.. .+..+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4466677666555 3567788888888 77888888888888887654 2345566777777777777
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q 006937 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (625)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 194 (625)
++.++..+|.+....++++.|...|++++.++|+...+ ++..|......|+.++|++.++++++++|....+-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~-------~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL-------YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 77777777777777777777777777777777776554 55555555666677777777777777666654433
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHH
Q 006937 195 YNLGVV-YSELMQYDTALGCYEK 216 (625)
Q Consensus 195 ~~la~~-~~~~~~~~~A~~~~~~ 216 (625)
...-.+ .+.....++|+.+|-+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCchhhhHHHHhh
Confidence 322222 3333445555555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=95.46 Aligned_cols=131 Identities=21% Similarity=0.205 Sum_probs=106.0
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CC-----------HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDS----GN-----------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (625)
...-..|..+++.|+|..|...|++++..-. .+ ..++.+++.|+.++++|.+|+..+.++|..+|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 3455678999999999999999999887522 11 24789999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC-hHHHHHHHHHHHhh
Q 006937 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN-TQDGIQKYYEALKI 186 (625)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~ 186 (625)
+|..+++..|.++...|+++.|+..|++++++.|++..+...+.. +..+... .+...+.|.+++..
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~-------l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK-------LKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999887544333 2222222 23345666666654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.5e-08 Score=87.50 Aligned_cols=107 Identities=19% Similarity=0.127 Sum_probs=99.1
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT 120 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (625)
+++.++..|..++..|+|.+|...|...++..|++ +.+++.||.+++.+|++++|...|..+.+..|++ +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 44669999999999999999999999999999986 5899999999999999999999999999987765 67899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 006937 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (625)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 153 (625)
.+|.+...+|+.++|...|+++++..|+...+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999999987763
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-07 Score=80.83 Aligned_cols=191 Identities=16% Similarity=0.133 Sum_probs=134.6
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHH---
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC--- 117 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 117 (625)
....+..++..|...++.|+|++|+..|+.+....|.++ .+.+.++.++++.+++++|+..+++.+++.|.++.
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 345789999999999999999999999999999988754 78999999999999999999999999999987654
Q ss_pred HHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 006937 118 AHTHCGILYKDEG--------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (625)
Q Consensus 118 ~~~~la~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (625)
+++..|.+++..= -..+|...|+..+...|++.-+...... +..+...+
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~------------------i~~~~d~L----- 166 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR------------------IVKLNDAL----- 166 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH------------------HHHHHHHH-----
Confidence 6777777766432 2456788889999999987544221111 11111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 006937 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (625)
Q Consensus 190 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (625)
..--...|+.|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus 167 -A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 167 -AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred -HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 2223445666777777777777777777665543 4556666667777777777665544333333443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.8e-08 Score=94.68 Aligned_cols=147 Identities=11% Similarity=0.067 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 281 DINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEM---------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (625)
Q Consensus 281 ~~~~A~~~~~~~l---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 348 (625)
..+.|+.+|.+++ +++|....++..++.++... ....+|.+..+++++++|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567888888888 88888888888888877643 12345666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 006937 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQ 427 (625)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 427 (625)
+++.|...|++|+.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+-....++|+..|-+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 666666666666666666666666666666666666666666666666666543332222222 2223344555555544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-08 Score=101.07 Aligned_cols=144 Identities=16% Similarity=0.062 Sum_probs=108.2
Q ss_pred HHcCCCCHHHH--HhHHHHHHHhcC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 006937 75 LEKDSGNVEAH--IGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG--------RLVEAAESYHK 141 (625)
Q Consensus 75 l~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~ 141 (625)
....|.+..+| +..|..+...++ ..+|+.+|+++++++|+++.++..++.++.... +...+....++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34556665544 555666655544 678888999999999998888888777765432 34456666666
Q ss_pred HHhc--CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 142 ALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (625)
Q Consensus 142 al~~--~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 219 (625)
++.+ .+..+.. +..+|......|++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.
T Consensus 410 a~al~~~~~~~~~-------~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRI-------YEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6664 4444433 55566677778999999999999999998 478999999999999999999999999999
Q ss_pred hCCCCHH
Q 006937 220 ERPMYAE 226 (625)
Q Consensus 220 ~~~~~~~ 226 (625)
++|.++.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9998775
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-08 Score=92.32 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=82.2
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 006937 334 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN 406 (625)
Q Consensus 334 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 406 (625)
....+..|..+ ...|++++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45555555554 55678888888888888888876 4688888888888888888888888888777664 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
.+|.++..+|++++|...|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 888888888888888888888888888876554
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.6e-05 Score=72.41 Aligned_cols=348 Identities=12% Similarity=0.047 Sum_probs=204.8
Q ss_pred HHHHHhHHHHHHHhc--CHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 006937 82 VEAHIGKGICLQMQN--MGRLAFDSFSEAVKLDPQN---ACAHTHCGILYK-DEGRLVEAAESYHKALSADPSYKPAAEC 155 (625)
Q Consensus 82 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (625)
+.++.++|..+...| +...++++++..+...|.+ +.....+|.+++ ...+++.|...++++..+...-+..+..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 356778888888888 8999999999998887764 456777786654 5789999999999998765444433333
Q ss_pred HHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHH
Q 006937 156 LAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAE 226 (625)
Q Consensus 156 ~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~ 226 (625)
.-.....++.++.... .+..+...+.+++++....+ ...+.++.++.-..++..|++.+.-..+.... ...
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 4444666777777766 88999999999999977654 45677899999999999999885432221111 111
Q ss_pred HHHHH--HHHHHHcCCH---HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchh--------------------------
Q 006937 227 AYCNM--GVIYKNRGDL---ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK-------------------------- 275 (625)
Q Consensus 227 ~~~~l--a~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~-------------------------- 275 (625)
+.+.+ +.++....+. ..+.....+..+....++.-...+-..|..+...
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 12222 1222222222 2222222233222222221111111111110000
Q ss_pred --------------------------------------hhhcCCHHHHHHHHHHHHhhCCC------CH--------HHH
Q 006937 276 --------------------------------------VKLEGDINQGVAYYKKALYYNWH------YA--------DAM 303 (625)
Q Consensus 276 --------------------------------------~~~~~~~~~A~~~~~~~l~~~~~------~~--------~~~ 303 (625)
-...|-+++|.++-++++..... .. ..+
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 01234455555555555433111 11 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHH
Q 006937 304 YNLGVAYGEMLKFDMAIVFYELAFHF---NPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQS 370 (625)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~al~~---~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~ 370 (625)
..+..+-.-.|++.+|++....+.+. .|. .+.+...+|.....-+.++.|...|..|.+..... +.+
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34455556667777777766666554 232 24555666776677777777877777777663322 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
-.++|..|...|+-+.-.+.++. +.|.+ ..+++..|...+.++++.||....++.++..
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 55677777776665444333332 23332 3456667777778888888888888888765
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-06 Score=80.43 Aligned_cols=265 Identities=14% Similarity=0.097 Sum_probs=184.4
Q ss_pred HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHc
Q 006937 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALERPM--------YAEAYCNMGVIYKNR 238 (625)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~~~--------~~~~~~~la~~~~~~ 238 (625)
.+..+...+..-.+.++....+.+.+....+..++..|++.+|.+.+... +...|. ....+.++|-++++.
T Consensus 217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~ 296 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL 296 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh
Confidence 33344444444444455555667788888899999999999999988654 222222 233568999999999
Q ss_pred CCHHHHHHHHHHHHhc-----------CCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 239 GDLESAIACYERCLAV-----------SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307 (625)
Q Consensus 239 g~~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 307 (625)
|.|.-+..+|.++++. .|...........++++.|..+...|+.-.|.++|.++......++..|..++
T Consensus 297 ~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 297 GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 9999999999999951 11111222333457788888888899999999999999999999999999999
Q ss_pred HHHHhcCC-------------------------------------------------HHHHHHHHHHHHhhC--------
Q 006937 308 VAYGEMLK-------------------------------------------------FDMAIVFYELAFHFN-------- 330 (625)
Q Consensus 308 ~~~~~~~~-------------------------------------------------~~~A~~~~~~al~~~-------- 330 (625)
.+++...+ .+-|.-+++.++-+-
T Consensus 377 EcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~ 456 (696)
T KOG2471|consen 377 ECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGS 456 (696)
T ss_pred HHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchh
Confidence 98853211 133444454444320
Q ss_pred -------------------------------------C-CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 331 -------------------------------------P-HC-----------AEACNNLGVIYKDRDNLDKAVECYQMAL 361 (625)
Q Consensus 331 -------------------------------------~-~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al 361 (625)
| .. ..++.+.+.+-...|+.-.|+..-.+.+
T Consensus 457 ~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLL 536 (696)
T KOG2471|consen 457 ILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLL 536 (696)
T ss_pred hhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 1 00 1345567778888999999999999988
Q ss_pred ccCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHH------H-----------------hCCC----------c--
Q 006937 362 SIKPNFSQSLNNLGVVY-----TVQGKMDAAAEMIEKAI------A-----------------ANPT----------Y-- 401 (625)
Q Consensus 362 ~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al------~-----------------~~p~----------~-- 401 (625)
+. |+...++..+|.+| ..+.+..+|...+.--+ . ++|. .
T Consensus 537 q~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~ 615 (696)
T KOG2471|consen 537 QL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVE 615 (696)
T ss_pred hh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHH
Confidence 76 45556666666555 45667777766554411 0 0110 0
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006937 402 ---AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (625)
Q Consensus 402 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (625)
...+++||.++.-+|++++|..++..+..+-|
T Consensus 616 ~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 616 EARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred HHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 23678999999999999999999999999888
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.8e-07 Score=85.09 Aligned_cols=379 Identities=13% Similarity=0.030 Sum_probs=231.7
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHH-HhcCCC--------c
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA-VKLDPQ--------N 115 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~ 115 (625)
....+........+++..+...+....+.++....+.+.+++..+..++..|++.+|.+.+... +...|. .
T Consensus 203 ~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~ 282 (696)
T KOG2471|consen 203 DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSS 282 (696)
T ss_pred ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhh
Confidence 3445566667777888899999999989888888889999999999999999999999987643 122222 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CC--CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 006937 116 ACAHTHCGILYKDEGRLVEAAESYHKALSA---------DP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (625)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~~--~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (625)
-..|.++|.++++.|.|.-+..+|.++++. .| ...-....-..++++.|..+...|+.-.|.++|.++.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 235688999999999999999999999961 11 1111122234568999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHH--------------H--HHh-----CC---CCHHHHHHHHHHHHH
Q 006937 185 KIDPHYAPAYYNLGVVYSELMQ---YDTALGCYEK--------------A--ALE-----RP---MYAEAYCNMGVIYKN 237 (625)
Q Consensus 185 ~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~--------------a--l~~-----~~---~~~~~~~~la~~~~~ 237 (625)
.....++..|..++.+.+...+ .++......+ . ++. .+ .-+..-..++.++.+
T Consensus 363 ~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLr 442 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLR 442 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHH
Confidence 9999999999999998875322 1111111111 0 000 00 001112222222222
Q ss_pred cCCH-----HHHHHHHHHHHhc----------------------------CC-Cc----HHHHhhHHHHHHHhchhhhhc
Q 006937 238 RGDL-----ESAIACYERCLAV----------------------------SP-NF----EIAKNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 238 ~g~~-----~~A~~~~~~al~~----------------------------~~-~~----~~~~~~~~~~~~~l~~~~~~~ 279 (625)
.+-+ ..--..+.-+... .| .. .+..+....++...+.+....
T Consensus 443 nal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~L 522 (696)
T KOG2471|consen 443 NALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELEL 522 (696)
T ss_pred hhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 1100 0000000000000 01 11 123344566777778888889
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAY-----GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~-----~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 354 (625)
|+.-.|+..-.+.++. ++-..++..+|.+| +.+.+..+|...+.--+--+.+....+ .....+.+.+--
T Consensus 523 gd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~-----n~~Df~~~~~~~ 596 (696)
T KOG2471|consen 523 GDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPY-----NQEDFDQWWKHT 596 (696)
T ss_pred cChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCccccccc-----chhhhhhhhccc
Confidence 9999999999988865 34455666666555 455666666655543111000000000 000001000000
Q ss_pred HHHHH----HHccCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 355 ECYQM----ALSIKPNF-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYAEAYNNLGVLYRDAGSISLAID 423 (625)
Q Consensus 355 ~~~~~----al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~ 423 (625)
+.++- .-+..|.. ...++++|.++.-+|++++|..++..+..+-+ ..+++....-.+-..+|+...|..
T Consensus 597 e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~ 676 (696)
T KOG2471|consen 597 ETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALA 676 (696)
T ss_pred cccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHH
Confidence 00000 00111111 23788999999999999999999998888766 445666666666778899999998
Q ss_pred HHHHHH
Q 006937 424 AYEQCL 429 (625)
Q Consensus 424 ~~~~al 429 (625)
.+++.-
T Consensus 677 ~lk~~~ 682 (696)
T KOG2471|consen 677 RLKQCT 682 (696)
T ss_pred HHHhcc
Confidence 888764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-05 Score=74.42 Aligned_cols=294 Identities=15% Similarity=0.049 Sum_probs=180.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILY 126 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 126 (625)
+.+..|.+....|+-..|.+.-.+.-+.-..+ +-+++.-++.-...|+++.|.+-|+.++. +|+. .-.+..+-.-.
T Consensus 86 qALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleA 164 (531)
T COG3898 86 QALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEA 164 (531)
T ss_pred HHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHH
Confidence 34556777777889999998888876543333 44556667778888999999999998774 3332 11222233334
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh---CCCC-----HHHHHHHH
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI---DPHY-----APAYYNLG 198 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~---~~~~-----~~~~~~la 198 (625)
...|..+.|..+-+.+....|.-..+. ...-...+..|+++.|+++.+..... .++. ...+...+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~-------~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAA-------RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHH-------HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 568999999999999999999877653 23334456779999999998776543 2221 11122222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh
Q 006937 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
... -..+...|...-.++.++.|+....-..-+..+++.|+..++-.+++.+.+..|... ++..|... +
T Consensus 238 ~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~a-----r 306 (531)
T COG3898 238 MSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRA-----R 306 (531)
T ss_pred HHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHh-----c
Confidence 222 234577888888888888888888888888888889999998888888888877632 22222221 1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
.|+ .++.-++++ .+...+.|++.+.....+...+..|++..|..--+
T Consensus 307 ~gd--ta~dRlkRa-------------------------------~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 307 SGD--TALDRLKRA-------------------------------KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred CCC--cHHHHHHHH-------------------------------HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 121 122222211 22223345555555555555555555555555555
Q ss_pred HHHccCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 006937 359 MALSIKPNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIA 396 (625)
Q Consensus 359 ~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 396 (625)
.+....|.. .++..++.+-... |+-.+...++.++++
T Consensus 354 aa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 354 AAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 555555442 2344444444433 666666666666655
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-09 Score=98.56 Aligned_cols=241 Identities=15% Similarity=0.060 Sum_probs=170.6
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 239 (625)
+...|+.|+++|.|++|+.+|.+++..+|.++..+.+.+..|+++.+|..|...++.++.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 006937 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 319 (625)
+..+|.+.++.++++.|++.+....++. +. ...++. -+.+..|. +-.|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~----i~-------Sl~E~~----I~~KsT~G-----------------~~~A 227 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLAR----IN-------SLRERK----IATKSTPG-----------------FTPA 227 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHH----hc-------chHhhh----HHhhcCCC-----------------CCcc
Confidence 9999999999999999997654433222 21 111110 01111111 1112
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006937 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (625)
Q Consensus 320 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (625)
.+-..+++.+ ..-|..+...|.++.++.++-+-+.....+...-.+ +..+.+.-++++|+....+++..+|
T Consensus 228 ~Q~~~Q~l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~ 298 (536)
T KOG4648|consen 228 RQGMIQILPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKP 298 (536)
T ss_pred ccchhhhccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCC
Confidence 2222222211 112444555666666766666655554444333333 5566677777788777777777777
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 400 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
.........+.+---.|...++...++.++.+.|.+..+...
T Consensus 299 s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~ 340 (536)
T KOG4648|consen 299 TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKET 340 (536)
T ss_pred CcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhh
Confidence 665555555555566677788888888888888887766544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.4e-08 Score=92.80 Aligned_cols=121 Identities=23% Similarity=0.239 Sum_probs=107.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCH
Q 006937 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (625)
Q Consensus 305 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (625)
.+..++...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3455566678899999999998888865 5667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (625)
+.|++..+++++..|.+...|+.|+.+|..+|++++|+..++.+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999766533
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.9e-08 Score=77.13 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=97.3
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH---HH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CA 118 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 118 (625)
...+..++..|...++.|+|.+|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++.++++|.++ .+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3567889999999999999999999999999988864 47899999999999999999999999999999875 47
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCCHHH
Q 006937 119 HTHCGILYKDEGR---------------LVEAAESYHKALSADPSYKPA 152 (625)
Q Consensus 119 ~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~~~~~ 152 (625)
++..|.+++.+.. ..+|...|++.++..|++..+
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8899999988876 889999999999999997654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-08 Score=82.65 Aligned_cols=105 Identities=27% Similarity=0.308 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006937 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (625)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (625)
+..-|.-++..|+|++|..-|..|+++.|..+ .++.+.|.++.+++.++.|+..+.++++++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 34457777888899999999999998888764 3788899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 412 YRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
|.++..+++|+.-|++.++.+|....++..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 999999999999999999999998877655
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=73.47 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=56.9
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
++..|+|++|+..|++++..+|++..+++.+|.+++..|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4678889999999999999999999999999999999999999999999999988888777776665
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-06 Score=75.76 Aligned_cols=173 Identities=17% Similarity=0.113 Sum_probs=128.1
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
.+..++..|...+..|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++.+.+.|.++.+.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d---- 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD---- 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh----
Confidence 46789999999999999999999999999998865 56889999999999999999999999999999988763
Q ss_pred HHHHHhHHHHHHh--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006937 158 IVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (625)
Q Consensus 158 ~~~~~l~~~~~~~--------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 229 (625)
.+++..|.+++.. .-..+|+..|+..+...|++.-+-..... +..+... -..--.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHH
Confidence 3355555554432 22456777777777777775433211111 1111111 123345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhch
Q 006937 230 NMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGT 274 (625)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~ 274 (625)
.+|..|.+.|.+..|+.-++.+++..|+.. ++...+..+|..+|.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 688999999999999999999999987754 455566677777774
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=92.10 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=107.2
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (625)
Q Consensus 277 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (625)
...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++++.|+..
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3467899999999999988865 6677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (625)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (625)
.+++++..|++...|..|+.+|..+|++++|+..++.+
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999887744
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=79.64 Aligned_cols=108 Identities=23% Similarity=0.247 Sum_probs=97.2
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH-----HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
+.+-..|+.++..|+|++|..-|..+|...|... ..+.+.|.++++++.++.|+..+.++++++|.+..++...|
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3455678889999999999999999999988753 46788999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 156 (625)
.+|.+...+++|+..|+++++.+|....+....
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 999999999999999999999999987664433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.4e-05 Score=78.68 Aligned_cols=287 Identities=12% Similarity=0.021 Sum_probs=194.3
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 006937 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (625)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (625)
...+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++... +..+-.+|...++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t-------Lq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT-------LQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH-------HHHHHHHHHHHhh
Confidence 467889999999999999999999999999999999999999998887776666665444 5667778888999
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCH---------H
Q 006937 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK-NRGDL---------E 242 (625)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~---------~ 242 (625)
.++|..+|++++..+|+ .+..+.+-.+|.+.+.|.+-.+.--+..+..|+++..+.....+.. ..... .
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999999999999999 8888899999999999988777777777788887665544444433 33222 2
Q ss_pred HHHHHHHHHHhcC-CCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHH-Hhh-CCCCHHHHHHHHHHHHhcCCHHHH
Q 006937 243 SAIACYERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA-LYY-NWHYADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 243 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-l~~-~~~~~~~~~~la~~~~~~~~~~~A 319 (625)
-|...+++.++.. +-...+. +..|. .+...++.+++|.+.+..- .+. .+.+...-......+...+++.+-
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE---~~Lyl---~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAE---IILYL---LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred HHHHHHHHHhccCCccchHHH---HHHHH---HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 3555666666655 2111111 11111 2334468899999998433 333 344445555667788889999999
Q ss_pred HHHHHHHHhhCCCCHHHHHH-H------------HHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHcCCHH
Q 006937 320 IVFYELAFHFNPHCAEACNN-L------------GVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMD 385 (625)
Q Consensus 320 ~~~~~~al~~~~~~~~~~~~-l------------a~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~ 385 (625)
.+...+++...+++...+.. . +..+...+..+..++..++.+......+. ++..+-.-+...|+.+
T Consensus 246 ~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~e 325 (932)
T KOG2053|consen 246 FELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSE 325 (932)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChH
Confidence 99999999998887222221 1 11112223344444445555444233332 3333333344667888
Q ss_pred HHHHHHHH
Q 006937 386 AAAEMIEK 393 (625)
Q Consensus 386 ~A~~~~~~ 393 (625)
++...|-+
T Consensus 326 e~~~~y~~ 333 (932)
T KOG2053|consen 326 EMLSYYFK 333 (932)
T ss_pred HHHHHHHH
Confidence 87655543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-07 Score=74.25 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---CHHHHHHHH
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLG 375 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la 375 (625)
+.+.+|.++-..|+.++|+..|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34445555555555555555555555543222 334455555555555555555555555554444 344444455
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 006937 376 VVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al 395 (625)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555544443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00017 Score=68.73 Aligned_cols=136 Identities=11% Similarity=0.036 Sum_probs=100.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH-----HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
+...|..+..++++.+|.++|.++.+...+++ +.+.++....+-+++.+.-...+...-+..|..+......|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 44578899999999999999999987655443 4444555556667788887777777777889888888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH--HHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPA------AECLAIVL--TDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~a~~~--~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
.++.+++.+|++.+......-...... .......+ ...+.++...|.+.++...+++.+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999999999999887765542221111 11111111 23577888999999999999988765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-07 Score=73.65 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNL 408 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 408 (625)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999975444 568999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 006937 409 GVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~ 430 (625)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988875
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-07 Score=83.36 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 006937 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 410 (625)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 410 (625)
.++.|.-+++.|+|..|...|..-++..|+. +.++++||.+++.+|++++|...|..+++..|+. +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6777777888888888988888888888876 5688999999999999999999999998887655 688999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
+..++|+.++|...|+++++..|+...+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999998776544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.2e-08 Score=70.65 Aligned_cols=56 Identities=29% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 006937 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 33444444444444444444444444444444444444444444444444443333
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=69.66 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=54.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
...+...++|++|++++++++..+|+++..+..+|.++..+|++.+|+..|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456778888888888888888888888888888888888888888888888888888887776655444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-06 Score=69.82 Aligned_cols=147 Identities=17% Similarity=0.151 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (625)
Q Consensus 282 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (625)
.+....-..+.+...|. ..-.+.+|..+.+.|++.+|...|++++. +..+++..+..++...+..+++..|...+++.
T Consensus 72 P~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 72 PERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred hhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 33333334444444444 34567899999999999999999999886 56788899999999999999999999999999
Q ss_pred HccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 361 LSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 361 l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
.+.+|. .++....+|.++...|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+....+
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 998875 4778888999999999999999999999999887 77777888999999988888776665543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.0005 Score=67.16 Aligned_cols=377 Identities=11% Similarity=0.032 Sum_probs=227.9
Q ss_pred ccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHh-HHHHHHHhcCHHHHHHHHHHH----Hhc---CCC
Q 006937 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG-KGICLQMQNMGRLAFDSFSEA----VKL---DPQ 114 (625)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~a----l~~---~p~ 114 (625)
..+..+..|...+...+..++|+....+|.++|...= +.+.|.. +..+-...|+...+....-++ +.. ++.
T Consensus 48 ~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~ 126 (656)
T KOG1914|consen 48 VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIK 126 (656)
T ss_pred cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcc
Confidence 3456788999999999999999999999999997543 3444433 334444455555544444443 332 455
Q ss_pred cHHHHHHHHHHHHH---cCCHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHH------------
Q 006937 115 NACAHTHCGILYKD---EGRLVEA--AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI------------ 177 (625)
Q Consensus 115 ~~~~~~~la~~~~~---~g~~~~A--~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~------------ 177 (625)
...+|...+..+.. .|++++- +...++..+..-..+ ...+-.+|... ..+++.+
T Consensus 127 s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP--m~nlEkLW~DY-------~~fE~~IN~~tarK~i~e~ 197 (656)
T KOG1914|consen 127 SYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP--MHNLEKLWKDY-------EAFEQEINIITARKFIGER 197 (656)
T ss_pred cchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc--cccHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Confidence 55566666554432 3455433 222333322211111 01112222222 2333333
Q ss_pred --------HHHHHHHhh-------CCC----C-------HHHHHHHHHHHHHcC------C--HHHHHHHHHHHHHhCCC
Q 006937 178 --------QKYYEALKI-------DPH----Y-------APAYYNLGVVYSELM------Q--YDTALGCYEKAALERPM 223 (625)
Q Consensus 178 --------~~~~~~l~~-------~~~----~-------~~~~~~la~~~~~~~------~--~~~A~~~~~~al~~~~~ 223 (625)
..+++...+ +|. . .+.|.++...-...+ . -..-.-.+++++..-+-
T Consensus 198 s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~ 277 (656)
T KOG1914|consen 198 SPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGY 277 (656)
T ss_pred CHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhc
Confidence 222222211 111 0 112222221111110 0 01223345666666667
Q ss_pred CHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhc---CCHHHHH
Q 006937 224 YAEAYCNMGVIYKNRGD--------------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE---GDINQGV 286 (625)
Q Consensus 224 ~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~ 286 (625)
.+++|+..+..+...++ .+++..+|++++...... ....++.++...... ...+..-
T Consensus 278 ~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~------~~~Ly~~~a~~eE~~~~~n~~~~~~ 351 (656)
T KOG1914|consen 278 HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE------NKLLYFALADYEESRYDDNKEKKVH 351 (656)
T ss_pred CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHhcccchhhhhH
Confidence 77888777666666555 677788888877643321 122333333222222 2366677
Q ss_pred HHHHHHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHccC
Q 006937 287 AYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNLDKAVECYQMALSIK 364 (625)
Q Consensus 287 ~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~ 364 (625)
..+++++.....+. -++..+-..-.+..-...|...|.++-+.......++..-|.+ |...++..-|...|+-.++..
T Consensus 352 ~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf 431 (656)
T KOG1914|consen 352 EIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKF 431 (656)
T ss_pred HHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhc
Confidence 78888877654443 3556666666677778899999999877654444455444443 556799999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
++.+..-......+...++-..|...|++++.. .++ ..++|..+-..-..-|+....++.=++-....|.+
T Consensus 432 ~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 432 GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999987 333 35788888888888999999998888877777744
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=91.12 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
+|+++..++++|.+|...|++++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666677777777777777777777777777777766643 666777777777777777777766665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-07 Score=68.52 Aligned_cols=63 Identities=24% Similarity=0.399 Sum_probs=35.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
.+|...+++++|++++++++..+|+++..+..+|.++..+|++.+|...|+++++..|+++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 345555555555555555555555555555555555555555555555555555555555444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-05 Score=69.89 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=74.4
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------
Q 006937 337 CNNLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA------- 402 (625)
Q Consensus 337 ~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------- 402 (625)
+..+|.+|... .++++|+.+|+++-+..... ...+...+..-..+++|.+|+..|++.....-++.
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 34455555544 66777777777776553322 23556666667778888888888888776644432
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 006937 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (625)
..++.-|.|+.-..+.-.+...+++..+++|...+.+.-.++
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 345566777777788888999999999999998887765443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-05 Score=67.19 Aligned_cols=226 Identities=14% Similarity=0.131 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALER-------------PMY------AEAYCNMGVIYKNRGDLESAIACYERC 251 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (625)
...|...-.++.++..+++|..-+...-+.+ |+. .......|.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4455556666777777777776665544332 111 123344566677778777776665554
Q ss_pred HhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-
Q 006937 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN- 330 (625)
Q Consensus 252 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 330 (625)
...-.+ +-.........+..++.+++-+ ..+.+.+..++.-.|.|.-.+..+.+.++.+
T Consensus 149 ~~~V~~--------------ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~ 208 (366)
T KOG2796|consen 149 KTVVSK--------------ILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP 208 (366)
T ss_pred HHHHHH--------------HHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence 322111 1111111223355666666654 3577888899999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 006937 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (625)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 404 (625)
|..+.....+|.+..+.|+.+.|..+|++.-+.. .....+..+.+.++.-.+++.+|...+.+++..+|.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 6678889999999999999999999999554332 2234577888889999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
-.+.|.|+.-+|+..+|++..+.+++..|...
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999754
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-06 Score=69.60 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHH
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNL 408 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l 408 (625)
..++.-|...++.|+|++|++.|+......|.. ..+...++.+|++.+++++|+..+++.++++|+++ -+++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 334444444444455555555554444444332 23444555555555555555555555555544442 344445
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHhcCCCChhhh
Q 006937 409 GVLYRDAGS---------------ISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 409 a~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~ 439 (625)
|.++..+.. ..+|...|++.++..|++.-+.
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 555444443 6789999999999999886554
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.6e-06 Score=80.27 Aligned_cols=104 Identities=26% Similarity=0.351 Sum_probs=92.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006937 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (625)
Q Consensus 341 a~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (625)
|..+...|+...|++++..|+...|.... ...++|.++.+.|...+|-..+.+++.+....+-.++.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 33444579999999999999999887644 67899999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhhhhHHH
Q 006937 420 LAIDAYEQCLKIDPDSRNAGQNRLL 444 (625)
Q Consensus 420 ~A~~~~~~al~~~p~~~~~~~~~~~ 444 (625)
.|++.|++|++++|+++.....+.+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHH
Confidence 9999999999999999988776654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00012 Score=64.61 Aligned_cols=232 Identities=14% Similarity=0.123 Sum_probs=145.7
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc------------------H-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------------------A-CAHTHCGILYKDEGRLVEAAESYHK 141 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~~ 141 (625)
....|...-.++.++...++|..-+...-+++..+ | ......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34566667777788888888887776655543211 1 1223345556667777766665555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006937 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221 (625)
Q Consensus 142 al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 221 (625)
....- ..+-.........+..++.+++-+ ..+.+.+..++.-.|.|.-.+..+.+.++.+
T Consensus 148 L~~~V--------------~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 148 LKTVV--------------SKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHH--------------HHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 43311 111111222233355666666654 3567888899999999999999999999988
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCH
Q 006937 222 -PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300 (625)
Q Consensus 222 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 300 (625)
|..+.....+|.+.++.|+.+.|..+|+..-+....-... ....
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~-----------------------------------q~~~ 252 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL-----------------------------------QGKI 252 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc-----------------------------------chhH
Confidence 6678889999999999999999999999765332211100 0112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 367 (625)
.+..+.+.++.-.+++.+|...+.+++..+|.++.+.++.|.|+...|+...|++.++.+++..|..
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 2344455555555666666666666666666666666666666666666666666666666666543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4e-07 Score=87.69 Aligned_cols=83 Identities=29% Similarity=0.326 Sum_probs=52.9
Q ss_pred CCCCCCCCccccccccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHH---HHhHHHHHHHhcCHHHHHHHH
Q 006937 29 LPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSF 105 (625)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~ 105 (625)
+.++++++...++...+..++.++.+|..++..|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|+..+
T Consensus 56 ~~~~~~~~~~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L 135 (453)
T PLN03098 56 SSSPSSSPAKDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCL 135 (453)
T ss_pred cCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33344444444445555666667777777777777777777777777777766643 666666666666666666666
Q ss_pred HHHHhc
Q 006937 106 SEAVKL 111 (625)
Q Consensus 106 ~~al~~ 111 (625)
++++++
T Consensus 136 rrALel 141 (453)
T PLN03098 136 RTALRD 141 (453)
T ss_pred HHHHHh
Confidence 666665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.6e-06 Score=64.23 Aligned_cols=100 Identities=20% Similarity=0.215 Sum_probs=83.9
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc----HHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTHCGI 124 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 124 (625)
..+-..|..+...|+.+.|++.|.+++..-|..+.+|.+.+..+.-+|+.++|++.+++++++.... -.++...|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3455678888889999999999999999999999999999999999999999999999999886543 346788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 125 LYKDEGRLVEAAESYHKALSADPS 148 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~ 148 (625)
+|...|+.+.|...|+.+-++...
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCH
Confidence 999999999999999888776554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-05 Score=64.63 Aligned_cols=148 Identities=17% Similarity=0.133 Sum_probs=98.0
Q ss_pred cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHhCChH
Q 006937 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174 (625)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~l~~~~~~~~~~~ 174 (625)
=+.+....-..+.+...|.. .-.+.+|....+.|++.+|...|++++.- ...+... +..+++..+..+++.
T Consensus 70 ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~-------lLglA~Aqfa~~~~A 141 (251)
T COG4700 70 LDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAM-------LLGLAQAQFAIQEFA 141 (251)
T ss_pred cChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHH-------HHHHHHHHHhhccHH
Confidence 34444444444555555543 23566777777777777777777777653 2233332 555666666777777
Q ss_pred HHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 175 DGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (625)
Q Consensus 175 ~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (625)
.|...+++..+.+|. .++....+|+.+..+|++.+|...|+.++...|. +......+..+.++|+..+|...+....
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 777777777777664 4566777778888888888888888888877776 5666677777777777777766555444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-05 Score=67.07 Aligned_cols=190 Identities=15% Similarity=0.118 Sum_probs=122.9
Q ss_pred cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHH
Q 006937 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175 (625)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~ 175 (625)
+++++|.++|.++- ..|....++..|-..|.++-...-... .....+..|...+.+|. ..+.++
T Consensus 28 ~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~-skhDaat~YveA~~cyk-k~~~~e 91 (288)
T KOG1586|consen 28 NKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAG-SKHDAATTYVEAANCYK-KVDPEE 91 (288)
T ss_pred cchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHhh-ccChHH
Confidence 46777777776653 233334444444444444433211110 00111333444444443 347778
Q ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHH
Q 006937 176 GIQKYYEALKIDPHY------APAYYNLGVVYSEL-MQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLE 242 (625)
Q Consensus 176 A~~~~~~~l~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~ 242 (625)
|+.++++++++..+. ...+..+|.+|..- .++++|+.+|+++-+.... .-..+...+..-...++|.
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888777775443 23455788888765 8999999999998765432 2345666777788899999
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHH
Q 006937 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301 (625)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 301 (625)
+|+..|+++....-++....+..-..++.-|.++....+.-.+...+++..+.+|...+
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 99999999988877777666666666667777777777877788888888888887654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-06 Score=63.75 Aligned_cols=97 Identities=23% Similarity=0.271 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHH
Q 006937 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVY 378 (625)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~ 378 (625)
+...|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++.... -.++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34456667777778888888888888888878888888888877888888888888887775433 23666777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCC
Q 006937 379 TVQGKMDAAAEMIEKAIAANP 399 (625)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p 399 (625)
..+|+-+.|...|+.+-++..
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCC
Confidence 777777777777777766543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.2e-07 Score=68.94 Aligned_cols=64 Identities=34% Similarity=0.493 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NP----TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
..++.++|.+|..+|++++|+.+|++++++ .+ ....++.++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345556666666666666666666666544 11 12456667777777777777777777777654
|
... |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00084 Score=67.86 Aligned_cols=211 Identities=13% Similarity=0.143 Sum_probs=110.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 194 YYNLGVVYSELMQYDTALGCYEKA------ALE----RPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (625)
Q Consensus 194 ~~~la~~~~~~~~~~~A~~~~~~a------l~~----~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (625)
|-.-|.+|.+..++++|+++|++. +++ .|.. ...-...|..+...|+++.|+..|-++-.+.
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~------- 736 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI------- 736 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH-------
Confidence 344556666666777777776642 222 2221 2223345666667777777777665542211
Q ss_pred hhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 006937 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342 (625)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 342 (625)
..-........+.+|+.+++....... ....|-.++.-|...|+|+.|.++|.++- ....-..
T Consensus 737 --------kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~ 799 (1636)
T KOG3616|consen 737 --------KAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAID 799 (1636)
T ss_pred --------HHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHH
Confidence 111111113455555555554332211 12234456677777777777777776542 2223334
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHH-------------HHHHHHH------HH----hC
Q 006937 343 IYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAA-------------AEMIEKA------IA----AN 398 (625)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A-------------~~~~~~a------l~----~~ 398 (625)
.|-+.|++..|.+.-++... |.. ...|...+.-+-+.|++.+| +..|++. +. ..
T Consensus 800 my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhC
Confidence 55566666666665555432 221 22344444444444444444 3433332 11 12
Q ss_pred CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 399 PTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 399 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
|+. .+.+..+|.-|...|+..+|...|-++-.
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 332 35778889999999999999888876643
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00055 Score=69.70 Aligned_cols=155 Identities=16% Similarity=0.082 Sum_probs=115.1
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCH-HH------HHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 278 LEGDINQGVAYYKKALYYNWHYA-DA------MYNLGVAYG----EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~~~~~-~~------~~~la~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 346 (625)
-.|+-+.+++.+.++.+...-.. -+ |+....... .....+.|.+.++...+..|+..-.++..|+++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 46899999999998876322111 11 111111111 24567889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCH---
Q 006937 347 RDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSI--- 418 (625)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~--- 418 (625)
.|+.++|++.|++++.....- .-.++.+++++..+.+|++|..++.+..+.+.-. .-..+..|.|+...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 999999999999988543332 3378889999999999999999999999876654 34556778889999988
Q ss_pred ----HHHHHHHHHHHhcC
Q 006937 419 ----SLAIDAYEQCLKID 432 (625)
Q Consensus 419 ----~~A~~~~~~al~~~ 432 (625)
++|.++|+++-.+.
T Consensus 360 ~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 66777776665443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.9e-07 Score=76.47 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=96.0
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+..++.+-..|+.++...+|..|+..|.+++..+|..+..+.+.+.|+++..+++.+.....+++++.|+....++.+|.
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence 34577788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 006937 125 LYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~ 145 (625)
.......+++|+..+.++..+
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.3e-07 Score=66.92 Aligned_cols=74 Identities=28% Similarity=0.407 Sum_probs=56.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
|+...++..+|.+|..+|++++|+.+|++++++...........+.++.++|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34466889999999999999999999999997632222233445777888888888888888888888888764
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.4e-05 Score=65.53 Aligned_cols=200 Identities=22% Similarity=0.190 Sum_probs=108.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307 (625)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 307 (625)
+..-+..|...+++++|..++.++.+-..++. .++.-+..+...+.+......+.++..+++++.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake~~klsEvvdl~eKAs-------------- 98 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS-------------- 98 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------
Confidence 33445555666666666666666665444332 233334444444444444556666666666654
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHc
Q 006937 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 381 (625)
Q Consensus 308 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~ 381 (625)
..|.+.|..+-|-..++++-+. ....++++|+.+|++++.+-... .+.+...+.++.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 3455555555555555544332 22345666666666666553222 23455566677777
Q ss_pred CCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhhhhHHHHhhhccC
Q 006937 382 GKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNYINE 451 (625)
Q Consensus 382 g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~ 451 (625)
..+++|-..+.+-... .++....+.....+|.-..++..|..+|+...++ .|++..+..+++- ....
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~---ayd~ 240 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT---AYDE 240 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH---Hhcc
Confidence 7777776666554332 2333344555555666666888888888776664 3444445555432 3356
Q ss_pred CCchHHHHH
Q 006937 452 GHDDKLFEA 460 (625)
Q Consensus 452 ~~~~~~~~~ 460 (625)
|+.++.-..
T Consensus 241 gD~E~~~kv 249 (308)
T KOG1585|consen 241 GDIEEIKKV 249 (308)
T ss_pred CCHHHHHHH
Confidence 666554443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.8e-06 Score=70.80 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD---KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (625)
Q Consensus 316 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (625)
++.|.+.++.....+|.+++.+++.|.++..+.++. ++.+ .+++|+.-|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~---------------------------miedAisK~e 59 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK---------------------------MIEDAISKFE 59 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH---------------------------HHHHHHHHHH
Confidence 566777777777777777777777777766553321 1111 1234444455
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhhhhhHH
Q 006937 393 KAIAANPTYAEAYNNLGVLYRDAG-----------SISLAIDAYEQCLKIDPDSRNAGQNRL 443 (625)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (625)
+++.++|+..++++.+|.+|..++ .|++|..+|++|...+|++...+..+-
T Consensus 60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 555555555555555555554433 367899999999999999887766543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0039 Score=62.37 Aligned_cols=345 Identities=9% Similarity=-0.058 Sum_probs=210.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 006937 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL-YKDEGRLVEAAESYHK 141 (625)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 141 (625)
..+.+...|...|...|.-...|...|..-.+.|..+.+.+.|++++.--|-....|..+-.. -...|+...-...|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 346667777788888898888899999999999999999999999999888877777655433 3355777777788888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHH
Q 006937 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYE 215 (625)
Q Consensus 142 al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~ 215 (625)
|......+-... ..|-..-.....++++..-...|++.++........++..=.-+... -..+++.+.-.
T Consensus 140 A~~~vG~dF~S~----~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLSD----PLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhcc----HHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 887765543321 12333344446677788888888888775433322222221111111 11122221111
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHh
Q 006937 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIA-CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (625)
Q Consensus 216 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 294 (625)
..... ......+...+-.+ .........+........+.......-.++.......+.+..++..+.
T Consensus 216 ~~~~~------------~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ik 283 (577)
T KOG1258|consen 216 DVAER------------SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIK 283 (577)
T ss_pred hHHhh------------hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcc
Confidence 11100 00000001111111 111111111111111111112221112222223334444444554443
Q ss_pred h-----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CC
Q 006937 295 Y-----NWH---YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KP 365 (625)
Q Consensus 295 ~-----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~ 365 (625)
. .|. ....|......-...|+++...-.|++++--.....+.|...+......|+.+-|-..+..+.++ .|
T Consensus 284 rpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k 363 (577)
T KOG1258|consen 284 RPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK 363 (577)
T ss_pred ccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC
Confidence 2 122 23456677777788888998888888888877788888888888888888888888888888776 45
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423 (625)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (625)
..+.+...-+..-...|++..|...+++..+..|+...+-........++|+.+.+..
T Consensus 364 ~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 364 KTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 6677777778888888899999999998888888888877777778888888888774
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00039 Score=70.80 Aligned_cols=167 Identities=13% Similarity=-0.011 Sum_probs=124.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhc---hhhh--hcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 006937 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG---TKVK--LEGDINQGVAYYKKALYYNWHYADAMY 304 (625)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~---~~~~--~~~~~~~A~~~~~~~l~~~~~~~~~~~ 304 (625)
.+-.+.--.|+-+.++..+.++.+ .++-......+....+... .+-. .....+.|.+.++...+..|+..-.++
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 333444456899999999999877 3332222222222211111 1111 356889999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHH
Q 006937 305 NLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYT 379 (625)
Q Consensus 305 ~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~ 379 (625)
..|+++...|+.++|++.|++++..... ..-.++.++.++..+.+|++|..++.+..+.+.-. .-..+..|.|+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 9999999999999999999998853322 24567899999999999999999999999875443 446677888999
Q ss_pred HcCCH-------HHHHHHHHHHHHh
Q 006937 380 VQGKM-------DAAAEMIEKAIAA 397 (625)
Q Consensus 380 ~~g~~-------~~A~~~~~~al~~ 397 (625)
..|+. ++|.+++.++-..
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999 7777777776544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0045 Score=61.87 Aligned_cols=390 Identities=12% Similarity=-0.001 Sum_probs=239.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHH-HHhcCHHHHHHHHHHHHhcCCC---cHHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKLDPQ---NACAHTHCGIL 125 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~ 125 (625)
-|...|..-.+.|..+.+.+.|++.+.--|-+...|..+.... ...|+.+.-...|++|...... ....|-..-..
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 3445677778899999999999999999998888877654443 4567788888889998887654 34567777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 205 (625)
...++++..-...|++.++. |...-. . ++..-.-.. ..+...-+...++++++...... . ......+
T Consensus 161 en~qks~k~v~~iyeRilei-P~~~~~-----~-~f~~f~~~l-~~~~~~~l~~~d~~~~l~~~~~~---~--~~~~~~~ 227 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEI-PLHQLN-----R-HFDRFKQLL-NQNEEKILLSIDELIQLRSDVAE---R--SKITHSQ 227 (577)
T ss_pred HhccccHHHHHHHHHHHHhh-hhhHhH-----H-HHHHHHHHH-hcCChhhhcCHHHHHHHhhhHHh---h--hhccccc
Confidence 77888999999999999875 322111 1 111100000 11111111111121111100000 0 0000001
Q ss_pred CHHHHHHHH-HHHHHhCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHhhHHHHHHHh
Q 006937 206 QYDTALGCY-EKAALERPMYAEAY-------CNMGVIYKNRGDLESAIACYERCLAV-----SPNFEIAKNNMAIALTDL 272 (625)
Q Consensus 206 ~~~~A~~~~-~~al~~~~~~~~~~-------~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~l 272 (625)
...+-.+.. .......+...... ...=.++.......+.+..++..++. .|.+..-. ..+...
T Consensus 228 ~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql----~nw~~y 303 (577)
T KOG1258|consen 228 EPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL----KNWRYY 303 (577)
T ss_pred ChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH----HHHHHH
Confidence 111111111 11111111111111 11112333334445555556655543 22221111 112222
Q ss_pred chhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Q 006937 273 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLD 351 (625)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 351 (625)
.......|+++.....|++++--.....+.|...+......|+.+-|...+..+.++. +..+.+...-+......|++.
T Consensus 304 Ldf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~ 383 (577)
T KOG1258|consen 304 LDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFD 383 (577)
T ss_pred hhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHH
Confidence 2334457899999999999998888889999999999999999999999999998874 667888888888899999999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCc---HHHHHHHHHH-HHHcCCHHHHHHH
Q 006937 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAANPTY---AEAYNNLGVL-YRDAGSISLAIDA 424 (625)
Q Consensus 352 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~---~~~~~~la~~-~~~~g~~~~A~~~ 424 (625)
.|...+++..+..|+...+-.........+|+.+.+.. ++.....-..+. ...+...++. +.-.++.+.|...
T Consensus 384 ~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~ 463 (577)
T KOG1258|consen 384 DAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARII 463 (577)
T ss_pred HHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999998889998888888888889999998884 333322221111 2334444443 4457889999999
Q ss_pred HHHHHhcCCCChhhhhhHHHHhhhccCCCchH
Q 006937 425 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456 (625)
Q Consensus 425 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 456 (625)
+.++++..|++...+..+..-..+...+....
T Consensus 464 l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d 495 (577)
T KOG1258|consen 464 LLEANDILPDCKVLYLELIRFELIQPSGREYD 495 (577)
T ss_pred HHHhhhcCCccHHHHHHHHHHHHhCCcchhhh
Confidence 99999999999887766544443434344333
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=8e-06 Score=68.11 Aligned_cols=96 Identities=25% Similarity=0.292 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH---HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 006937 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK---LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ-- 206 (625)
Q Consensus 132 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~---~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-- 206 (625)
++.|.+.++.....+|.+.+.....+.++..++.... ...-+++|+.-|++++.++|+...+++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555555555444444444444321 22356788999999999999999999999999987654
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHH
Q 006937 207 ---------YDTALGCYEKAALERPMYAEA 227 (625)
Q Consensus 207 ---------~~~A~~~~~~al~~~~~~~~~ 227 (625)
|++|..+|+++...+|++...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 566777777777777775443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00078 Score=68.08 Aligned_cols=312 Identities=16% Similarity=0.138 Sum_probs=154.7
Q ss_pred hHHHHHHHhcCHHHHHHHHHHH------Hhc----CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 006937 87 GKGICLQMQNMGRLAFDSFSEA------VKL----DPQN-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (625)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (625)
.-|.++.+..++++|+++|++. +++ .|.. ...-...|.-+...|+++.|+..|-.+--
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~----------- 734 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC----------- 734 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----------
Confidence 3445555556666666666532 222 2221 11223345556667777777777655421
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006937 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (625)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (625)
+............+.+|+..++....... ....|-.++.-|...|+|+.|.++|.++ ........+|
T Consensus 735 ----~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my 801 (1636)
T KOG3616|consen 735 ----LIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMY 801 (1636)
T ss_pred ----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHH
Confidence 12222233344667777777765543322 2334556677788888888888888764 2223334567
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHh------chhhhhcCCHHHHHHHHHHHH----------hhCCC
Q 006937 236 KNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDL------GTKVKLEGDINQGVAYYKKAL----------YYNWH 298 (625)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~l----------~~~~~ 298 (625)
-+.|++++|.+.-+++.. |.... .+...+.-+-.- ..+|...|..+.|+..|++.- +.+|+
T Consensus 802 ~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred hccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChh
Confidence 777888887777666532 22111 111111111111 112233344555555554421 11222
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH--HHH---
Q 006937 299 Y-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ--SLN--- 372 (625)
Q Consensus 299 ~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~--- 372 (625)
. .+....+|.-+...|+...|...|-++-.. ..-...|...+-+++|-..-+ .....+.. +.+
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~d~--------kaavnmyk~s~lw~dayriak---tegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF--------KAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFLWA 948 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhhhH--------HHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHHHH
Confidence 2 345667777777888888887777665321 111222333333333322111 11111111 000
Q ss_pred ------HHHHHHHHcCCHHHHHHHH------HHHHH-----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 373 ------NLGVVYTVQGKMDAAAEMI------EKAIA-----ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 373 ------~la~~~~~~g~~~~A~~~~------~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
.-..++-+.|-.+.|+... +-+.. ....-++++..++..+...|++++|-++|-.+++++.-+
T Consensus 949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 0111223334444433321 11111 122335677888888888888888888888888887544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00028 Score=61.69 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=16.0
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
|..-+..+...+++++|...+.++.+-
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~ 60 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG 60 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 444455555566666666666666643
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.4e-05 Score=72.55 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=94.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHH
Q 006937 307 GVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385 (625)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 385 (625)
|......|+...|+.++..++...|.. .....++|.+..+.|-...|-.++.+++.+....+-.++.+|.++..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 444456799999999999999988865 3457899999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006937 386 AAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (625)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (625)
.|++.|+++++.+|+++.....|-.+-.
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999987776655543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0014 Score=62.06 Aligned_cols=131 Identities=21% Similarity=0.089 Sum_probs=104.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhh----CCC----------
Q 006937 126 YKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKI----DPH---------- 189 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~----~~~---------- 189 (625)
...+|+++.|..++.|+-... ..++.....++.++++.|......+ +++.|...++++.+. ...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999997766 6667777889999999999999999 999999999999887 211
Q ss_pred CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006937 190 YAPAYYNLGVVYSELMQYD---TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (625)
Q Consensus 190 ~~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (625)
...++..++.+|...+.++ +|...++.+-...|+.+..+...-.++.+.++.+++.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 1356778889998887765 455566666667788888886766777778999999999999887654
|
It is also involved in sporulation []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0069 Score=63.91 Aligned_cols=295 Identities=11% Similarity=0.071 Sum_probs=154.6
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSG---NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (625)
.+++..---...++..+-..+-++++++++-.+.. +......+-.. .-.-+.....++.++.-..+.. .+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa~------~i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDAP------DI 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCch------hH
Confidence 45555556667778888888889999887654321 22222222222 2233445555666554333221 24
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 202 (625)
|.+....+-|++|...|++.- -+..+.. ......++.+.|.++-+++ +.+.+|..+|....
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~----~n~~A~~----------VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD----MNVSAIQ----------VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQL 1115 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc----ccHHHHH----------HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHH
Confidence 556666667777777776531 1111111 0111224555555554443 33566677777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH-------------
Q 006937 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL------------- 269 (625)
Q Consensus 203 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------- 269 (625)
+.|...+|++.|-++ +++..+.....+..+.|.|++-+.++.-+-+...... .-..+..+|
T Consensus 1116 ~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred hcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-chHHHHHHHHHhchHHHHHHHh
Confidence 777777777666553 4556666666666667777776666666554432211 111111111
Q ss_pred --------HHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----------
Q 006937 270 --------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---------- 331 (625)
Q Consensus 270 --------~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---------- 331 (625)
...|+-+...+.++.|.-+|.. ..-|..++..+..+|+|..|...-+++-....
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc
Confidence 2234444455556655555543 33456677777777777777777666532200
Q ss_pred ---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 006937 332 ---------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (625)
Q Consensus 332 ---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (625)
-.++-+-.+...|...|-+++-+..++.++-+...+-..+..+|.+|.+
T Consensus 1262 ~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1262 KEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 0122233344445555555555555555555555554555555554443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.5e-05 Score=72.15 Aligned_cols=136 Identities=9% Similarity=0.043 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (625)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455666666666778888888888876666667888888888666 4555558888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 006937 381 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (625)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (625)
.|+.+.|..+|++++..-|... .+|......-...|+.+......+++.+..|++..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 8888888888888888766544 57778888888889999999999999998888543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0026 Score=63.23 Aligned_cols=296 Identities=15% Similarity=0.068 Sum_probs=149.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCC-CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC--------CcHHHHHHHHH
Q 006937 54 YANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--------QNACAHTHCGI 124 (625)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~ 124 (625)
.+++..+.|+|+. +.+.+...+ ......+..+......++++++...++++...-- ......+..-.
T Consensus 4 ~~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3567778888888 333333322 2346667777777788999988888887765421 11111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHH--HHHHHHHHHh----hCCCCHHHHHHHH
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD--GIQKYYEALK----IDPHYAPAYYNLG 198 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~--A~~~~~~~l~----~~~~~~~~~~~la 198 (625)
.+....+.+++..+....... ......+...|...-. ....+++- -+-.++..+- ........+...+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~--~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a 153 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLP--NMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFA 153 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 111222333333333211100 1111111111111100 00111111 1111112111 1344567889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhch
Q 006937 199 VVYSELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~ 274 (625)
.+..+.|+++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+................ ..+.
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~--~~~~ 231 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAEL--KSGL 231 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHH--hhcc
Confidence 999999999999999999887552 2567888889999999999999999988887221111000000000 0000
Q ss_pred hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (625)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 348 (625)
................ ......++..+|...... +..++++..|.++++.+|....+|..+|..+...-
T Consensus 232 ~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 232 LESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred ccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 0000000000000000 000123445555555555 56666666666666666666666666665544321
Q ss_pred -----------------CHHHHHHHHHHHHccCCC
Q 006937 349 -----------------NLDKAVECYQMALSIKPN 366 (625)
Q Consensus 349 -----------------~~~~A~~~~~~al~~~~~ 366 (625)
-...|+..|-+++...+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 307 ESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 124588888888888777
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00048 Score=67.00 Aligned_cols=141 Identities=16% Similarity=0.051 Sum_probs=85.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc----------------
Q 006937 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---------------- 115 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 115 (625)
-.......+..+.+.-++.-+++++.+|+.+.++..++.- ......+|..+|+++++.....
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 3455566788999999999999999999999999888763 2334567777777776542110
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 116 ---------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 116 ---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
..+...+|.|..+.|+.++|++.++..++..|.... ..+..++..++...+.+.++...+.+.-+.
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-----l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-----LNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-----hhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 223445566666666666666666666665553211 112455555556666666666666554322
Q ss_pred -CCCCHHHHHHHHH
Q 006937 187 -DPHYAPAYYNLGV 199 (625)
Q Consensus 187 -~~~~~~~~~~la~ 199 (625)
-|+++...+..+.
T Consensus 325 ~lpkSAti~YTaAL 338 (539)
T PF04184_consen 325 SLPKSATICYTAAL 338 (539)
T ss_pred cCCchHHHHHHHHH
Confidence 2344444444333
|
The molecular function of this protein is uncertain. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.016 Score=61.82 Aligned_cols=316 Identities=13% Similarity=0.037 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHcCCC----CHHHHHhHHHHHH-HhcCHHHHHHHHHHHHhcCCC--c----HHHHHHHHHHHHHcCCHH
Q 006937 65 VDALALYEIVLEKDSG----NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLDPQ--N----ACAHTHCGILYKDEGRLV 133 (625)
Q Consensus 65 ~~A~~~~~~~l~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~ 133 (625)
..|+.+++-+++..+- .+.+.+.+|.+++ ...++++|..++++++.+... . ..+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4567788877753222 3467888999987 789999999999999887643 2 224556788888888777
Q ss_pred HHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHcCC
Q 006937 134 EAAESYHKALSADPSYKPA-AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPA----YYNLGVVYSELMQ 206 (625)
Q Consensus 134 ~A~~~~~~al~~~~~~~~~-~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~----~~~la~~~~~~~~ 206 (625)
|...+++.++........ +...-+ +. ........+++..|++.++...... ..++.+ ....+.+....+.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~fr-ll-~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFR-LL-KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHH-HH-HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999998875552221 111111 11 1222222379999999999988775 344333 3344666777788
Q ss_pred HHHHHHHHHHHHHhCC----------CCHHHHHHHHHH--HHHcCCHHHHHHHHHHH---HhcCCCcH------------
Q 006937 207 YDTALGCYEKAALERP----------MYAEAYCNMGVI--YKNRGDLESAIACYERC---LAVSPNFE------------ 259 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~----------~~~~~~~~la~~--~~~~g~~~~A~~~~~~a---l~~~~~~~------------ 259 (625)
.+++++.++++..... ....++..+-.+ +...|+++.+...+++. ++...+..
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~ 274 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIP 274 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEE
Confidence 8888888888744221 123444444443 44567766666554443 22211110
Q ss_pred --------------H------HHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCC-------C-------------
Q 006937 260 --------------I------AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------Y------------- 299 (625)
Q Consensus 260 --------------~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-------~------------- 299 (625)
. .....+.+|.--|......+..++|.++++++++.-.+ .
T Consensus 275 l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~ 354 (608)
T PF10345_consen 275 LNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQ 354 (608)
T ss_pred eecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHH
Confidence 0 01112233333344444455555777777666543111 0
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH------
Q 006937 300 ------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---PH------CAEACNNLGVIYKDRDNLDKAVECYQ------ 358 (625)
Q Consensus 300 ------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~------~~~~~~~la~~~~~~~~~~~A~~~~~------ 358 (625)
....+..+.+..-.+++..|...++.+.... |. .+..++..|..+...|+.+.|+..|.
T Consensus 355 ~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 355 WLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh
Confidence 0124456666677788888888877766542 22 36677788888888888888888887
Q ss_pred --HHHccCCCC---HHHHHHHHHHHHHcCC
Q 006937 359 --MALSIKPNF---SQSLNNLGVVYTVQGK 383 (625)
Q Consensus 359 --~al~~~~~~---~~~~~~la~~~~~~g~ 383 (625)
.+....+.. .-+..++..++...+.
T Consensus 435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~ 464 (608)
T PF10345_consen 435 CEAANRKSKFRELYILAALNLAIILQYESS 464 (608)
T ss_pred hhhhccCCcchHHHHHHHHHHHHHhHhhcc
Confidence 333333332 1244556666665554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00023 Score=65.06 Aligned_cols=164 Identities=11% Similarity=-0.030 Sum_probs=123.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh-CCCC---HHHHH
Q 006937 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-DPHY---APAYY 195 (625)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~~~~---~~~~~ 195 (625)
..-+.+....|++.+|...+++.++..|.+.-++. .--..++..|+...-...+++++.. +++. ..+.-
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~k-------fsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVK-------FSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHG 179 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhh-------hhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHH
Confidence 34455667789999999999999999998866533 3334555668888888888888877 5554 55566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchh
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~ 275 (625)
.++..+...|-|++|.+..++++++++.+..+...++.++...|++.++.++..+.-..-. ..+...+.-|...+..
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr---~s~mlasHNyWH~Al~ 256 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR---QSWMLASHNYWHTALF 256 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh---hhhHHHhhhhHHHHHh
Confidence 7788889999999999999999999999999999999999999999999998876543322 2333334445555555
Q ss_pred hhhcCCHHHHHHHHHHHH
Q 006937 276 VKLEGDINQGVAYYKKAL 293 (625)
Q Consensus 276 ~~~~~~~~~A~~~~~~~l 293 (625)
+...+.++.|+++|.+-+
T Consensus 257 ~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 257 HIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhcccchhHHHHHHHHHH
Confidence 566677777777776644
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.018 Score=61.36 Aligned_cols=409 Identities=15% Similarity=0.068 Sum_probs=241.2
Q ss_pred cchHhHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCC--CH----HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC---c
Q 006937 46 FEGKDALSYANILR-SRNKFVDALALYEIVLEKDSG--NV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---N 115 (625)
Q Consensus 46 ~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 115 (625)
.++...+.+|.+++ ...++++|...+++++..... .. .+.+.++.++.+.+... |+..+++.++.... .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 46788899999998 678999999999999876533 22 34456788888887766 99999999886544 2
Q ss_pred -HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC---
Q 006937 116 -ACAHTHC--GILYKDEGRLVEAAESYHKALSADP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--- 187 (625)
Q Consensus 116 -~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--- 187 (625)
....+.+ ...+...+++..|++.++....... .+... ...+....+.+....+..+++++.++++....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~---~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV---FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 2222222 2333334799999999999988753 33332 22234445566677788888888888774431
Q ss_pred ---CC----CHHHHHHHH--HHHHHcCCHHHHHHHHHHH---HHh---CC---C---C----------------------
Q 006937 188 ---PH----YAPAYYNLG--VVYSELMQYDTALGCYEKA---ALE---RP---M---Y---------------------- 224 (625)
Q Consensus 188 ---~~----~~~~~~~la--~~~~~~~~~~~A~~~~~~a---l~~---~~---~---~---------------------- 224 (625)
+. ...++..+- .++...|+++.+...+++. ++. .+ . +
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~ 292 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFS 292 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEe
Confidence 11 233344333 3455677777776665544 211 11 0 0
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-----------------HHH--hhHHHHHHHhchhhh
Q 006937 225 --------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-----------------IAK--NNMAIALTDLGTKVK 277 (625)
Q Consensus 225 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------------~~~--~~~~~~~~~l~~~~~ 277 (625)
.-++..-|......+..++|.++++++++.-.+.. ..+ .....++...+....
T Consensus 293 wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~ 372 (608)
T PF10345_consen 293 WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNF 372 (608)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 11233345566667777788888888875422211 011 112233344555566
Q ss_pred hcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhhCCCC---HHHH
Q 006937 278 LEGDINQGVAYYKKALYYN---WH------YADAMYNLGVAYGEMLKFDMAIVFYE--------LAFHFNPHC---AEAC 337 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~---~~------~~~~~~~la~~~~~~~~~~~A~~~~~--------~al~~~~~~---~~~~ 337 (625)
..+++..+....+.+.... |. .+..++..|..+...|+.+.|+..|. .+....+.+ .-+.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 6889988988888776543 22 36678999999999999999999998 333333333 2344
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHccCCCCHHHHHHHHH-----HHH--HcCCHHHHHHHHHHHHHhC-CC--c--
Q 006937 338 NNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQSLNNLGV-----VYT--VQGKMDAAAEMIEKAIAAN-PT--Y-- 401 (625)
Q Consensus 338 ~~la~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~la~-----~~~--~~g~~~~A~~~~~~al~~~-p~--~-- 401 (625)
.++..++...+.-.. +...++..-....+.+..+...+. ++. ..-...++...+.++++.. .. +
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 566677766554333 344444332221122222222222 221 1223447777777777654 11 1
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhhhhhH----HHHhhhccCCCchHHHH
Q 006937 402 --AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS---RNAGQNR----LLAMNYINEGHDDKLFE 459 (625)
Q Consensus 402 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~----~~~~~~~~~~~~~~~~~ 459 (625)
.-++..++..++ .|+..+......++..+.... ....+.. ++...+-..|+.+++-.
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~ 598 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEE 598 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 234556666666 788888777777777655444 4443322 22233555666665443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0038 Score=65.27 Aligned_cols=177 Identities=23% Similarity=0.236 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHh-----cCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcC--
Q 006937 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-----NMGRLAFDSFSEAVKL-----DPQNACAHTHCGILYKDEG-- 130 (625)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 130 (625)
+..+|..+++.+.+. .+..+...+|.|+..- .+.+.|+.+|+.+.+. .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887665 5778888899988754 5899999999998771 1125667888999998843
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh---CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 006937 131 ---RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA---GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE- 203 (625)
Q Consensus 131 ---~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~- 203 (625)
++..|+.+|.++-..... .+ .+.+|.++... .+...|.++|..+... .+..+.+.++.+|..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~--~a-------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP--DA-------QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc--hH-------HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 678899999999876544 33 34445555443 3678999999988764 467888888888875
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 006937 204 ---LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (625)
Q Consensus 204 ---~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 254 (625)
..+...|..++.++.+.. .+.+...++..+... ++++.+.-.+....+.
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 357889999999998887 455555555555443 7777766666555444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0031 Score=60.69 Aligned_cols=125 Identities=13% Similarity=0.061 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCcHHH
Q 006937 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYER-CLAVSPNFEIA 261 (625)
Q Consensus 190 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~~~~~~~ 261 (625)
+++...++-.+|....+|+.-+++.+..-.. -++.+.+.+.+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4667778888899999999999999887666 45567788899999998 9999999999999 55556667777
Q ss_pred HhhHHHHHHHhchh--hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 006937 262 KNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (625)
Q Consensus 262 ~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 315 (625)
+...+.+|-.+-.. .......++|+..|.++.+.+|+. ..-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 77778877665332 122335778888888888877543 333444555555554
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.7e-06 Score=71.20 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=48.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006937 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421 (625)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 421 (625)
..++...+|..|+.+|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+....++.+|.+......+++|
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 33444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHh
Q 006937 422 IDAYEQCLK 430 (625)
Q Consensus 422 ~~~~~~al~ 430 (625)
+..+.++..
T Consensus 98 I~~Lqra~s 106 (284)
T KOG4642|consen 98 IKVLQRAYS 106 (284)
T ss_pred HHHHHHHHH
Confidence 555555533
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.4e-05 Score=65.92 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
...+.+++.|+...|+|-++++.....+..+|.+..+++..|.+....=+.++|...|.++++++|.-..+...-
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrE 304 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRE 304 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHH
Confidence 447889999999999999999999999999999999999999999999999999999999999999876665543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00028 Score=64.62 Aligned_cols=149 Identities=13% Similarity=-0.032 Sum_probs=79.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLDKAV 354 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~~~~~~A~ 354 (625)
.|++.+|...+++.++..|.+.-++..--.+++.+|+...-...+++.+.. +++. ..+.-.++..+...|-|++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 345555555555555555555555555555555555555555555555544 3333 333334455555556666666
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
+.-++++++++.+..+...++.++...|++.++.+++.+.-..-... ..-|...|.++...+.++.|++.|.+
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 66666666666666666666666666666666665555432221110 11233445555555666666666654
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.6e-05 Score=65.85 Aligned_cols=108 Identities=18% Similarity=0.099 Sum_probs=95.6
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHH--------cCCCCH----------HHHHhHHHHHHHhcCHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLE--------KDSGNV----------EAHIGKGICLQMQNMGRLAFDSFS 106 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~ 106 (625)
......+-..|+.++..|+|.+|...|+.++. ..|.++ ..+.+++.|+...|+|-++++...
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 34566788899999999999999999998864 245543 467899999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 006937 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (625)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 152 (625)
.++..+|.+..+++..|.+....=+..+|...|.++++++|.-...
T Consensus 255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999999985544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.004 Score=61.85 Aligned_cols=138 Identities=13% Similarity=0.186 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CC-C----
Q 006937 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KP-N---- 366 (625)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~-~---- 366 (625)
......+...+.+..+.|+++.|...+.++....+ ..+.+....+.++...|+..+|+..++..+.. .. .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34567888899999999999999999998887652 24677888899999999999999988887771 00 0
Q ss_pred ----------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006937 367 ----------------------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (625)
Q Consensus 367 ----------------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (625)
...++..+|...... +..+++...|+++++.+|+...+|+.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 023555666666666 7788888888899888888888888888776
Q ss_pred HHcCC-----------------HHHHHHHHHHHHhcCCC
Q 006937 413 RDAGS-----------------ISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 413 ~~~g~-----------------~~~A~~~~~~al~~~p~ 434 (625)
...=+ ...|+..|-+++...++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 54321 12366666666666666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.08 E-value=1e-05 Score=51.75 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (625)
++..+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00017 Score=68.30 Aligned_cols=137 Identities=11% Similarity=0.050 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM-QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (625)
.|+...+...+.+..+.|..+|.++++..+....+|...|..-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 356666777777778888888888886666677888888888666 4555558888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 006937 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (625)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (625)
.|+.+.|..+|++++..-+..... ..+|......-...|+.+....+.+++.+..|..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~----~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQS----KKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHC----HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hCcHHHHHHHHHHHHHhcCchhHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 888888888888888776654321 2234445555556677777777777777666653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00074 Score=65.77 Aligned_cols=238 Identities=15% Similarity=0.064 Sum_probs=116.1
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH
Q 006937 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (625)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~ 165 (625)
..+..-..+..+.++-++...+|++++|+.+.++..++.- ......+|..+|+++++........ ..
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~-----------s~ 238 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGK-----------SQ 238 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhch-----------hh
Confidence 3444455677889999999999999999999999888753 2344678888888887753321100 00
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCH
Q 006937 166 SLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDL 241 (625)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~ 241 (625)
.....|..- ........ ...+...+|.+..++|+.++|++.++..++..|. +..++.++..++...+.|
T Consensus 239 ~~~~~g~~~-------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 239 FLQHHGHFW-------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred hhhcccchh-------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 000000000 00000001 1233344555555555555555555555554443 334555555555555555
Q ss_pred HHHHHHHHHHHhc-CCCcHHHHhhHHHHHHH-hch-----hhhhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHH----
Q 006937 242 ESAIACYERCLAV-SPNFEIAKNNMAIALTD-LGT-----KVKLEG---DINQGVAYYKKALYYNWHYADAMYNLG---- 307 (625)
Q Consensus 242 ~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~-l~~-----~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~la---- 307 (625)
.++...+.+.-+. -|+.....+..+....+ .++ ...+.| .-..|++.+.++++.+|.-+..+..+=
T Consensus 312 ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Lil 391 (539)
T PF04184_consen 312 ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLIL 391 (539)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCC
Confidence 5555555553222 12222222221111111 111 111112 234466666666666666554333221
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 006937 308 --VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344 (625)
Q Consensus 308 --~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 344 (625)
.-..+.|+ .||+.+---.+..-.....++..|-..+
T Consensus 392 PPehilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~tw 429 (539)
T PF04184_consen 392 PPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCTW 429 (539)
T ss_pred ChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHHh
Confidence 12334443 5666555555544444444444444433
|
The molecular function of this protein is uncertain. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.8e-06 Score=77.99 Aligned_cols=109 Identities=18% Similarity=0.120 Sum_probs=101.8
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
++.+-..|..++..+.|+.|+..|.++++++|+.+..+-+.+.++.+.+++..|+..+.++++.+|....+|+..|....
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 44556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAECL 156 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 156 (625)
..+++.+|...|++...+.|+.+.+...+
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 99999999999999999999998875443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0064 Score=63.64 Aligned_cols=229 Identities=25% Similarity=0.310 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHhh
Q 006937 193 AYYNLGVVYSELM-----QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNN 264 (625)
Q Consensus 193 ~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~ 264 (625)
+.+.+|.+|.+.. +++.|+.+|.++-+.. ++.+.+.+|.++.... +...|.++|..+.... +..+...
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHH
Confidence 4444555554421 3444555555554432 2344445555544433 3445555555554332 2223333
Q ss_pred HHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCH----HHHHH
Q 006937 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-LKFDMAIVFYELAFHFNPHCA----EACNN 339 (625)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~----~~~~~ 339 (625)
++.++.. | .....+...|..+++++.+.. .+.+.+.++..+..- +.++.+...+....+..-..+ ..+..
T Consensus 366 la~~y~~-G--~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~ 440 (552)
T KOG1550|consen 366 LALCYEL-G--LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLD 440 (552)
T ss_pred HHHHHHh-C--CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHH
Confidence 3333322 1 112335555666666655554 233333333333222 455544444443333321111 11111
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006937 340 LGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ----GKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (625)
Q Consensus 340 la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (625)
....... ..+...+...+.++.. ..+..+...+|.+|..- .+++.|...|.++.... ....+++|.+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~ 515 (552)
T KOG1550|consen 441 QSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYM 515 (552)
T ss_pred hccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhH
Confidence 1101111 1245556666665543 35667778888887654 35888888888887776 8888889988
Q ss_pred HHHc---CCHHHHHHHHHHHHhcCCCC
Q 006937 412 YRDA---GSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 412 ~~~~---g~~~~A~~~~~~al~~~p~~ 435 (625)
+..- .....|.++|.++.+.+.+.
T Consensus 516 ~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 516 HEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 8651 12688889998888876654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.029 Score=59.53 Aligned_cols=234 Identities=14% Similarity=0.062 Sum_probs=145.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (625)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (625)
-++.+.|.++.+++ +.+..|..+|.+....|...+|++.|-++ +++..+.....+..+.|.|++-+.++.
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 45666666666654 45677788888888888888888777654 566667777777777788877777776
Q ss_pred HHHhcCCCC---HHHHHHHHHH-----------------HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 141 KALSADPSY---KPAAECLAIV-----------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (625)
Q Consensus 141 ~al~~~~~~---~~~~~~~a~~-----------------~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (625)
-+-+...+. .+....++.. ....|.-++..+.|+.|.-+|.. ..-|..++..
T Consensus 1158 MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~T 1229 (1666)
T KOG0985|consen 1158 MARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLAST 1229 (1666)
T ss_pred HHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHH
Confidence 665433221 1111111110 22345566666777777666643 4457778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-----------C--------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 201 YSELMQYDTALGCYEKAALER-----------P--------------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~-----------~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (625)
+..+|+|..|....+++-... . -+++-+-.+...|...|-+++-+..++.++.+.
T Consensus 1230 LV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 999999999998888773211 0 023445567778888999999999999988887
Q ss_pred CCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCCHHHHH
Q 006937 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAI 320 (625)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~~~~~~A~ 320 (625)
..+......++..|... ++++-.+.++-....- -+....|..+.-+|.+-..|+.|.
T Consensus 1310 RAHMgmfTELaiLYsky--------kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY--------KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 66665555666655543 3444443333222110 112345666677776666666554
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.1e-05 Score=68.34 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=92.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (625)
.++.+-..|+.|+..++|..|+..|.+.|+..-. ++..|.+.|.|.+..|+|..|+..+.+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 5667788999999999999999999999987443 456789999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPS 148 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~ 148 (625)
+.|++.+.++.+|..+++..+.++.+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999998776544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.033 Score=58.58 Aligned_cols=298 Identities=17% Similarity=0.101 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC-----CC
Q 006937 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-----HY 190 (625)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-----~~ 190 (625)
.+.+..-+..+...|...+|+...-.+- +| . ..+.++.+.+.-....++..--. ..++.-| .+
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~--d~---~---~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~~~l~~~ 414 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG--DP---E---MAADLLEQLEWQLFNGSELSLLL----AWLKALPAELLAST 414 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC--CH---H---HHHHHHHhhhhhhhcccchHHHH----HHHHhCCHHHHhhC
Confidence 5566666677777888888877654431 11 1 12233334444444444433222 2222223 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM---------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (625)
+......+.......++.+|..++.++...-+. .....-..|.+....|++++|.+..+.++..-|.+.
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~-- 492 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA-- 492 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--
Confidence 556667788888899999999999888765433 234555678888899999999999999998887653
Q ss_pred HhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCC----C--HHHHHHHHHHHHhcCC--HHHHHHHHHHHH----hh
Q 006937 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----Y--ADAMYNLGVAYGEMLK--FDMAIVFYELAF----HF 329 (625)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~----~--~~~~~~la~~~~~~~~--~~~A~~~~~~al----~~ 329 (625)
+.....++..+|....-.|++++|..+.+.+.+.... . ..+....+.++..+|+ +.+....+...- ..
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 3344567777888888899999999999988876332 2 2344556788888884 333333333322 22
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-
Q 006937 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI----KPNF--SQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY- 401 (625)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 401 (625)
.|.........+.++...-+++.+.....+.++. .|.. .. .++.++.+++..|++++|...+......-.+.
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 3444334444444444433466666666666554 2222 22 33589999999999999999999887763222
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 402 ------AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 402 ------~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
..+..........+|+..+|.....+
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 11222233344567888888887776
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.8e-05 Score=50.58 Aligned_cols=39 Identities=23% Similarity=0.121 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHH
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKG 89 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 89 (625)
++.+|..+...|++++|++.|+++++.+|+++.++..+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 344444444444444444444444444444444444433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.022 Score=54.81 Aligned_cols=150 Identities=9% Similarity=-0.030 Sum_probs=93.3
Q ss_pred HHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (625)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 149 (625)
.++.-++.+|.+...|+.+..-+..+|.+++-.+.+++...-.|--+.+|...-..-+..+++.....+|-+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 3455578899999999999999999999999999999999888887777776666666678888888888888875433
Q ss_pred HHHHHHHHHHHHHhHHHH---HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHH
Q 006937 150 KPAAECLAIVLTDLGTSL---KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS---------ELMQYDTALGCYEKA 217 (625)
Q Consensus 150 ~~~~~~~a~~~~~l~~~~---~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~---------~~~~~~~A~~~~~~a 217 (625)
.+.|...-. |...-.-. ...-..-+|-+..-...-.+|.....|...+..+. ++.+.+.-.+.|.++
T Consensus 109 ldLW~lYl~-YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 109 LDLWMLYLE-YIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred HhHHHHHHH-HHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 222221110 00000000 00011223333333333346776666666665543 334456666777777
Q ss_pred HHhC
Q 006937 218 ALER 221 (625)
Q Consensus 218 l~~~ 221 (625)
+...
T Consensus 188 l~tP 191 (660)
T COG5107 188 LQTP 191 (660)
T ss_pred HcCc
Confidence 7643
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.1e-05 Score=77.57 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCC
Q 006937 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383 (625)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 383 (625)
-.-+...+..+.++.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.+....++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34455666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
+.+|...|++...+.|+++.+...+..|-... ...-|++++-..++++
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v-----s~~~fe~ai~~~~~d~ 135 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIV-----SEEKFEKAILTPEGDK 135 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH-----HHHhhhhcccCCccCC
Confidence 77777777777777777777766666553322 3344555555544343
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.2e-05 Score=47.74 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=19.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006937 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (625)
Q Consensus 391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (625)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556666666666666666666666665554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.5e-05 Score=46.82 Aligned_cols=32 Identities=44% Similarity=0.768 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46677777777777777777777777777775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.015 Score=61.04 Aligned_cols=246 Identities=15% Similarity=0.028 Sum_probs=162.7
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--C-------HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc-
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSG--N-------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN- 115 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 115 (625)
..++-.+..|.......++.+|..++.++...-+. . ++..-..|.+....|+.++|++..+.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 35666778899999999999999999988765333 1 2455667888899999999999999999987764
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCCh--HHHHHHHHHHH----h
Q 006937 116 ----ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEAL----K 185 (625)
Q Consensus 116 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~--~~A~~~~~~~l----~ 185 (625)
..+...+|.+..-.|++++|..+...+.+....... +.....+....+.++..+|+. .+....+...- .
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~-~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV-YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 346778889999999999999999998877544322 233344455667778888833 33333333222 2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 006937 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMY--AE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (625)
Q Consensus 186 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (625)
..|.+.......+.++...-+++.+.....+.++. .|.. .. .++.++.+....|++++|...+.+......+.
T Consensus 572 q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 572 QKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred hcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 23443334444444444444466666666665543 2222 22 23588999999999999999999887665443
Q ss_pred HHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHH
Q 006937 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (625)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 292 (625)
.......+.++.-.......+|+.+++.....+.
T Consensus 652 ~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 652 QYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 2222233333333334445577777777766653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0071 Score=58.32 Aligned_cols=177 Identities=12% Similarity=0.017 Sum_probs=128.3
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQNACAHTHCGILYKD---EGRLVEAAESYHK-ALSADPSYKPA 152 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~~~~~~~ 152 (625)
+++....+-.+|....+|+.-+...+..-.+ -++...+...+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999999887666 45567788889999998 9999999999999 45556667777
Q ss_pred HHHHHHHHHHhHHHH--HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh--
Q 006937 153 AECLAIVLTDLGTSL--KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LE-- 220 (625)
Q Consensus 153 ~~~~a~~~~~l~~~~--~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~-- 220 (625)
.-..+.+|..+-... ......++|+..|.++.+.+|+. ..-.+++.++...|.-.+....+++.. +.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 777777776654331 22345899999999999999653 444566666666665333332222221 11
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 006937 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (625)
Q Consensus 221 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (625)
.-.+...+-.++.+..-.|++++|++.++++++..|..
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 12345556677788888999999999999999998764
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0069 Score=53.88 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-H
Q 006937 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD-T 209 (625)
Q Consensus 131 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~-~ 209 (625)
.-..|+..-+.++.++|.+-..|...-.++..++ .+..+-++++.++++.+|.+..+|...-.+....|++. .
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~------~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLM------SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH------HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 4455667777778888887777665544444443 45677788888888888988888888888888888887 7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHH-hchhhhhcCCHHHHHHH
Q 006937 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAY 288 (625)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~ 288 (625)
-++..+.++..+..+..+|...--+....+.++.-+.+..+.++.+-.+..++...-.+... .| .......+.-+.+
T Consensus 132 ELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~--~~~~~~le~El~y 209 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKG--VISKAELERELNY 209 (318)
T ss_pred hHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccC--CccHHHHHHHHHH
Confidence 78888888888888888888888888888889888888888888776555544432111111 00 0001134455667
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHh
Q 006937 289 YKKALYYNWHYADAMYNLGVAYGE 312 (625)
Q Consensus 289 ~~~~l~~~~~~~~~~~~la~~~~~ 312 (625)
..+.+...|++..+|..|.-++..
T Consensus 210 t~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 210 TKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHh
Confidence 777788888888888887777765
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.03 Score=53.94 Aligned_cols=78 Identities=9% Similarity=-0.144 Sum_probs=62.0
Q ss_pred cccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHH
Q 006937 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (625)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (625)
...+.+.-.++.+.+.+-.+|.+++-.+.+++...-.|--+.+|...-..-...+++.....+|.+++...-+ .+.|.
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~ 113 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWM 113 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHH
Confidence 4456778889999999999999999999999999888877777776666666678888888888888875432 44443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.5e-05 Score=47.35 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=18.6
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006937 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388 (625)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 388 (625)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555665566666666655555555554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0039 Score=56.81 Aligned_cols=160 Identities=14% Similarity=0.036 Sum_probs=89.2
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006937 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (625)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 162 (625)
+.-+..+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-...... .... ......
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~--l~a~i~ 211 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHG--LQAQIE 211 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHH--HHHHHH
Confidence 3344445555666666666666666666666666666666666666666666665554431111111 1000 000111
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Q 006937 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGD 240 (625)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~ 240 (625)
+..-....++. ..+++.+..+|++..+-+.+|..+...|+.+.|++.+-..++.+.. +..+...+-.++...|.
T Consensus 212 ll~qaa~~~~~----~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 212 LLEQAAATPEI----QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHhcCCCH----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 11111111221 2234455668888999999999999999999999888888876543 44555556566655554
Q ss_pred HHHHHHHHH
Q 006937 241 LESAIACYE 249 (625)
Q Consensus 241 ~~~A~~~~~ 249 (625)
-+.+...++
T Consensus 288 ~Dp~~~~~R 296 (304)
T COG3118 288 ADPLVLAYR 296 (304)
T ss_pred CCHHHHHHH
Confidence 443433333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.86 E-value=4e-05 Score=45.93 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567777777777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0011 Score=60.24 Aligned_cols=156 Identities=21% Similarity=0.184 Sum_probs=109.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH-HHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGIL 125 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~ 125 (625)
..+..+..+......|++.+|...|..++...|++.++...++.|+...|+.+.|...+...-....+.. ..+......
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 4556777888999999999999999999999999999999999999999999999888875432222211 111111133
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSE 203 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~ 203 (625)
+.+.....+. ..+++.+..+|++.+. -+.++..+...|+.+.|++.+-..++.+.. +..+...+-.++..
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~a-------a~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEA-------ALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 3333333322 3455666778998887 566777777889999999999988887543 44555555555555
Q ss_pred cCCHHHH
Q 006937 204 LMQYDTA 210 (625)
Q Consensus 204 ~~~~~~A 210 (625)
.|.-+.+
T Consensus 285 ~g~~Dp~ 291 (304)
T COG3118 285 FGPADPL 291 (304)
T ss_pred cCCCCHH
Confidence 5533333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.028 Score=53.26 Aligned_cols=159 Identities=13% Similarity=-0.018 Sum_probs=95.9
Q ss_pred HhcCHHHHHHHHHHHHhcC----CCc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc-------CCCCHHHHHHHH
Q 006937 94 MQNMGRLAFDSFSEAVKLD----PQN----ACAHTHCGILYKDEG-RLVEAAESYHKALSA-------DPSYKPAAECLA 157 (625)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~-------~~~~~~~~~~~a 157 (625)
..|+.+.|..++.++-... |+. ...++..|......+ +++.|..+++++.+. .....+......
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4455555555555544332 211 234555566666666 777777777776655 233444455567
Q ss_pred HHHHHhHHHHHHhCChH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 006937 158 IVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNM 231 (625)
Q Consensus 158 ~~~~~l~~~~~~~~~~~---~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l 231 (625)
.++..++.++...+.++ +|...++.+....|+.+..+...-.+....++.+++.+.+.+++...+- +.......
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 77888888888877654 4555666666667888888866666666789999999999999886542 22222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 006937 232 GVIYKNRGDLESAIACYERCLA 253 (625)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~ 253 (625)
..-+.. .....+...+...+.
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHH
Confidence 222222 334556666665554
|
It is also involved in sporulation []. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.02 Score=66.35 Aligned_cols=87 Identities=8% Similarity=-0.001 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006937 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (625)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 320 (625)
..+-+-.+++++-.-..++.....++.++...+++....|.++.|...+-++.+.. -+.+....|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 34444444444332222222334556666666666666666666666666665544 4556666666666666666666
Q ss_pred HHHHHHHhh
Q 006937 321 VFYELAFHF 329 (625)
Q Consensus 321 ~~~~~al~~ 329 (625)
..+++.++.
T Consensus 1723 ~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1723 SVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHh
Confidence 666666644
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.043 Score=63.78 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------
Q 006937 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PT---------- 400 (625)
Q Consensus 332 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~---------- 400 (625)
...+.|...|++....|+++.|..++-+|.+.. -+.+....|..+...|+-..|+..+++.++.+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 347788888888888888888888888877765 56778888888888888888888888888652 22
Q ss_pred c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCChhhhh
Q 006937 401 Y------AEAYNNLGVLYRDAGSI--SLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 401 ~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~ 440 (625)
. ..+...++.-....|++ ..-+.+|..+.+..|....-+.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy 1793 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHY 1793 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCcee
Confidence 1 12344445555555553 3456777888888885554433
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.023 Score=50.65 Aligned_cols=199 Identities=16% Similarity=0.125 Sum_probs=146.4
Q ss_pred chHhHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHh-cCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 47 EGKDALSYANILRSR-NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-NMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+-+..+...+..+.. ..-..|+.+-..++..+|.+..+|...-.++..+ .+..+-++++.++++.+|.+..+|...-.
T Consensus 41 ~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ 120 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRV 120 (318)
T ss_pred hHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 344555555554444 4568999999999999999999988887777655 46788899999999999999999999999
Q ss_pred HHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 125 LYKDEGRLV-EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (625)
Q Consensus 125 ~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (625)
+....|+.. .-++..+.++..+.++-.+|...- .+...-+.++.-+.+..+.++.+-.+-.+|...-.+...
T Consensus 121 ive~l~d~s~rELef~~~~l~~DaKNYHaWshRq-------W~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~ 193 (318)
T KOG0530|consen 121 IVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQ-------WVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITN 193 (318)
T ss_pred HHHHhcCcccchHHHHHHHHhccccchhhhHHHH-------HHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEe
Confidence 999999888 888999999998888877754333 334444779999999999998877666666543222222
Q ss_pred -c-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH
Q 006937 204 -L-----MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG--DLESAIACYERCL 252 (625)
Q Consensus 204 -~-----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al 252 (625)
. -..+.-+.+..+.+...|++..+|..|.-++.. .| ...+-.......+
T Consensus 194 ~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 194 TKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred ccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 1 123455677888899999999999998888875 44 2334444444443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.075 Score=58.22 Aligned_cols=335 Identities=13% Similarity=0.033 Sum_probs=175.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHh----c---CHHHHHHHHHHHHhcCCCcHHHHHH
Q 006937 52 LSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQ----N---MGRLAFDSFSEAVKLDPQNACAHTH 121 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~ 121 (625)
+..-..++..+.|++|+..|+++-...|.. .++.+..|.....+ | .+++|+..|++.. -.|.-|--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence 445677889999999999999999998865 46788888877643 2 4677777777643 45666777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH--------
Q 006937 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-------- 193 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-------- 193 (625)
.|.+|.++|++++-+++|.-+++..|+.+......-.+.+.+-.+.... -..|....--++...|.....
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISSREEEKFLE 635 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 9999999999999999999999999998776544444444433333221 122222222233332221100
Q ss_pred ---------------------HHH-H-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 194 ---------------------YYN-L-GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (625)
Q Consensus 194 ---------------------~~~-l-a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (625)
... + -.+-+..|..---.+.++++....+- .+..+.-.+...+|+++-+.+....
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (932)
T PRK13184 636 ILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY--RALADIFYVACDLGNWEFFSQFSDI 713 (932)
T ss_pred HHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH--HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 000 0 01112233333334455555554432 5555666666777877766554443
Q ss_pred HHh---c--CCCcHH--HHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 006937 251 CLA---V--SPNFEI--AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD-AMYNLGVAYGEMLKFDMAIVF 322 (625)
Q Consensus 251 al~---~--~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~la~~~~~~~~~~~A~~~ 322 (625)
.-+ . .|.+.. ....+......+. .......++++.+.+.. ..|.... +....+.-....++.+.-...
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (932)
T PRK13184 714 LAEVSDEITFTESIVEQKVEELMFFLKGLE-ALSNKEDYEKAFKHLDN---TDPTLILYAFDLFAIQALLDEEGESIIQL 789 (932)
T ss_pred HHHHhhhccchHHHHhhhHHHHHHHHHHHH-HHHccccHHHHHhhhhh---CCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 321 1 111111 1111111111111 11223455555543332 2222221 122222222222332222222
Q ss_pred HHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 323 YELAFHF---NPHCAEACNNLGVIYKDRDNLDKAVECYQMALS--IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 323 ~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
.+..-.. ..............|....++++|-+.+..--. ...+...+....|--+...++-+-|...|..+.
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 790 LQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 2222221 112233344455566666777777776633211 122334566666666666677777777776665
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.2e-05 Score=69.64 Aligned_cols=98 Identities=16% Similarity=0.096 Sum_probs=91.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (625)
.-..|...+..|.+++|++.|..+++++|..+..+...+.+++++++...|+..+..+++++|+...-+-..+.....+|
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 34467788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 006937 131 RLVEAAESYHKALSADPS 148 (625)
Q Consensus 131 ~~~~A~~~~~~al~~~~~ 148 (625)
++.+|...+..+.+++-+
T Consensus 197 ~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYD 214 (377)
T ss_pred chHHHHHHHHHHHhcccc
Confidence 999999999999987654
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.058 Score=52.92 Aligned_cols=97 Identities=9% Similarity=0.003 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (625)
...-..+-..+.+.|-+.+|...|.+...+-|-....+..+..+-.. ..+...+..+|+.++.....+++.|...-..
T Consensus 460 ~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 460 VTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKE 539 (568)
T ss_pred eehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHh
Confidence 33344445555666666777777777666666655555544443322 1235566666666666666666666666555
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 006937 412 YRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~ 430 (625)
-..+|..+.+-..|.+|++
T Consensus 540 e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hccCCCcccccHHHHHHHH
Confidence 5566666666666666665
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0042 Score=52.84 Aligned_cols=118 Identities=24% Similarity=0.141 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 318 MAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI 391 (625)
Q Consensus 318 ~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~ 391 (625)
+.....++....++.+. .+...++..+...+++++|+..++.++....+. .-+-..++.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444455555554442 344677889999999999999999998764433 346778999999999999999998
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
+...... -.+......|.++...|+.++|+..|+++++..++..
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 7653221 1133456789999999999999999999999985543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00013 Score=43.56 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555666666666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00031 Score=64.34 Aligned_cols=99 Identities=21% Similarity=0.189 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006937 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (625)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (625)
+..-|.-|++.++|..|+..|.+.++..-.+ ...|.+.|.+....|+|..|+..+.+++..+|.+..+++.-|.|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3344555555555555555555555543222 234555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC
Q 006937 413 RDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 413 ~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
..+.++.+|..+.+..++++-+.
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHH
Confidence 55555555555555555554443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.084 Score=51.18 Aligned_cols=373 Identities=12% Similarity=0.012 Sum_probs=205.8
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc-------------
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------------- 115 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------- 115 (625)
+.+..+-...+-..+.+.-...+-..-+..|..+...+..|...++.+.+.+|++.+....+.-...
T Consensus 46 Evl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~ 125 (549)
T PF07079_consen 46 EVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLF 125 (549)
T ss_pred HHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHh
Confidence 4444444455566677766666666666788888888999999999999999999988766542111
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhHHHHHHh----CChHHHHHHHHHH-
Q 006937 116 --ACAHTHCGILYKDEGRLVEAAESYHKALSADPS-----YKPAAECLAIVLTDLGTSLKLA----GNTQDGIQKYYEA- 183 (625)
Q Consensus 116 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~a~~~~~l~~~~~~~----~~~~~A~~~~~~~- 183 (625)
...-...+.++...|++.++...+++.+..--. +.+.+.. +...+|+.|+-. ...+-+..+|+.+
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~---~vlmlsrSYfLEl~e~~s~dl~pdyYemil 202 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR---AVLMLSRSYFLELKESMSSDLYPDYYEMIL 202 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH---HHHHHhHHHHHHHHHhcccccChHHHHHHH
Confidence 112234578899999999999999988764322 2222111 111223322210 1111111111111
Q ss_pred ------Hhh------------------------CCCC-----HHHHHHHHHHHH--------------HcCCHHHHHHHH
Q 006937 184 ------LKI------------------------DPHY-----APAYYNLGVVYS--------------ELMQYDTALGCY 214 (625)
Q Consensus 184 ------l~~------------------------~~~~-----~~~~~~la~~~~--------------~~~~~~~A~~~~ 214 (625)
-.. -|.. ..++.+..+.|. -..+.+++....
T Consensus 203 fY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~c 282 (549)
T PF07079_consen 203 FYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFC 282 (549)
T ss_pred HHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHH
Confidence 100 1110 011111111000 011223333333
Q ss_pred HHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhh-hc---CCHHHH
Q 006937 215 EKAALE-----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-LE---GDINQG 285 (625)
Q Consensus 215 ~~al~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~-~~---~~~~~A 285 (625)
+..... ...-....-.+-....+.++..+|.+++.-...++|+..... .+...-..+-++.. .. .+...-
T Consensus 283 e~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~-Kllls~~~lq~Iv~~DD~~~Tklr~y 361 (549)
T PF07079_consen 283 EAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSE-KLLLSPKVLQDIVCEDDESYTKLRDY 361 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhh-hhhcCHHHHHHHHhcchHHHHHHHHH
Confidence 222111 111122222333344567888888888888888888765222 11111111111111 11 122233
Q ss_pred HHHHHHHHhhCCCC---HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHH
Q 006937 286 VAYYKKALYYNWHY---ADAMYNLGVAYGEMLK-FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQM 359 (625)
Q Consensus 286 ~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~ 359 (625)
+..++.+-..+-+. +.-+..-|.-+.+.|. -++|+..++.+++..+.+....+..-... ...|.+|+. .+-+
T Consensus 362 L~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fv--Kq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 362 LNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFV--KQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHH--HHHHHHHHhhhhHHH
Confidence 34444444434332 3345566777788887 88999999999999888865443322211 122333332 1222
Q ss_pred HHc---------cCC---CCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 360 ALS---------IKP---NFSQSLNNLG--VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (625)
Q Consensus 360 al~---------~~~---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (625)
.+. +.| .+.+....++ ..++..|+|.++.-+-.=..++.| .+.++..+|.++....+|++|..++
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 222 222 2344444444 457789999999999999999999 7999999999999999999999988
Q ss_pred HHH
Q 006937 426 EQC 428 (625)
Q Consensus 426 ~~a 428 (625)
...
T Consensus 519 ~~L 521 (549)
T PF07079_consen 519 QKL 521 (549)
T ss_pred HhC
Confidence 754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00024 Score=42.47 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
.+++.+|.++..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0028 Score=53.62 Aligned_cols=96 Identities=20% Similarity=0.123 Sum_probs=75.4
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------------HHHHHhHHHHHHHhcCHHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFS 106 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (625)
+.+...|......|+.+.++..+++++...... ..+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344556777888999999999999999874322 1344567777888999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (625)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (625)
+++..+|.+..++..+..++...|+..+|+..|++...
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0036 Score=52.90 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|++.|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35667788888999999999999999999999999999999999999999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00011 Score=67.49 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=62.7
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389 (625)
Q Consensus 310 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 389 (625)
.+..|.++.|++.|..++.++|.....+...+.++.++++...|+..+..+++++|+...-+-..+.+...+|++++|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34456677777777777777777777777777777777777777777777777777776666666777777777777777
Q ss_pred HHHHHHHhCC
Q 006937 390 MIEKAIAANP 399 (625)
Q Consensus 390 ~~~~al~~~p 399 (625)
.+..+.+++-
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 7777766643
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.12 Score=50.26 Aligned_cols=135 Identities=11% Similarity=0.008 Sum_probs=86.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
.++....-.......|+.-.|-..+..++...|.++......+.+...+|+|+.+...+..+-+.-.....+...+-+..
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 34444455566678899999999999999999999998889999999999999998888766554443344444555556
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 188 (625)
...|++++|....+-.+...-++++. ....+......|-++++...+++.+.++|
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei-------~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEV-------LTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhh-------eeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 66666666666666555544333332 11122222333445555555555554433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00023 Score=42.50 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
.+++.+|.+|..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777778888888888888888888777774
|
... |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.066 Score=51.45 Aligned_cols=129 Identities=27% Similarity=0.326 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------
Q 006937 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD------- 348 (625)
Q Consensus 281 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~------- 348 (625)
+..+|..+|+.+. ....+.+.+.+|.+|.. ..+..+|..+|+++.+..... ......++..|..-.
T Consensus 92 ~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 92 DKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred cHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 4566666666332 33455666667776665 346777777777777664433 344666666666531
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006937 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (625)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (625)
+...|...|.++-... ++.+...+|.+|.. ..++.+|..+|.++.+... ....+.++ ++...|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2347888888877664 67788888877765 3478899999999888766 77888888 666655
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.019 Score=55.52 Aligned_cols=135 Identities=11% Similarity=0.104 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 006937 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN---RGDLESAIACYE 249 (625)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~ 249 (625)
.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-+++++..+|++...|...-..... .-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999998888766554443 346778888888
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 006937 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (625)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 329 (625)
+++..-....... ..........+. ....++..+.....+.|..+.|+..++-.+++
T Consensus 127 ~~l~~L~~~~~~~-----------------~~~~~~~~~~e~------~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 127 KCLRALSRRRSGR-----------------MTSHPDLPELEE------FMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHhhccc-----------------cccccchhhHHH------HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 8876532211000 000000000000 01345666777777888888888888888877
Q ss_pred C
Q 006937 330 N 330 (625)
Q Consensus 330 ~ 330 (625)
+
T Consensus 184 n 184 (321)
T PF08424_consen 184 N 184 (321)
T ss_pred H
Confidence 4
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.021 Score=55.23 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCCCHHHHHhHHHHHHHhcC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006937 69 ALYEIVLEKDSGNVEAHIGKGICLQMQNM------------GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (625)
Q Consensus 69 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (625)
..|++.++.+|.+.++|..+....-..-. .+.-+.++++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999988876544322 456778899999999999999888888888888999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 137 ~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
+.+++++..+|++...|..+-. .-......-.+......|.+++..
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~----~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLD----FRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHH----HHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999999999998877654221 111112233566777777666653
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.33 Score=50.89 Aligned_cols=369 Identities=12% Similarity=-0.011 Sum_probs=210.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HcCCHHHHHHH
Q 006937 62 NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK---DEGRLVEAAES 138 (625)
Q Consensus 62 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 138 (625)
+.-++=+.-++.-+..++.+...+..|-..+...|++++-...-.++.++.|..+..|.....-.. ..++..++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344455566666677888888899999999999999998888888888888888887766553322 34778888999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHH
Q 006937 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-------YAPAYYNLGVVYSELMQYDTAL 211 (625)
Q Consensus 139 ~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~~~la~~~~~~~~~~~A~ 211 (625)
|++++.-. .+...|...+..+...+..+...++++.....|.+++..-.. ....+...-..|...-..++-+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99998643 345556666666666666777778999999999998875322 2345555566666666667777
Q ss_pred HHHHHHHHhCCCCHH----HHHHHH--H-HHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 212 GCYEKAALERPMYAE----AYCNMG--V-IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 212 ~~~~~al~~~~~~~~----~~~~la--~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
.++...+... .+.+ .+.... . ......+++.|..-+.+.+.............-..+...-+.....|....
T Consensus 252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence 7777777654 2211 112221 1 122345566666655554433333222222222233333344445666666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCH-----------------------------
Q 006937 285 GVAYYKKALYYNWHYADAMYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCA----------------------------- 334 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~----------------------------- 334 (625)
-...+++++...+.+...|...+...-. ++-.+.+...+.+++...|-..
T Consensus 331 i~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls 410 (881)
T KOG0128|consen 331 IQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLS 410 (881)
T ss_pred HHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 6666666666655555555554433211 1111111111111111111100
Q ss_pred --HHHHHHHHHHHH-c-------------CCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 006937 335 --EACNNLGVIYKD-R-------------DNLDKAVECYQMALSI-KPNFSQSLNNLGVVYT-VQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 335 --~~~~~la~~~~~-~-------------~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 396 (625)
..+.+....|.+ . ..+..|..+|...... -......+...|.+.. .+++.+.|..+.+..+.
T Consensus 411 ~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 411 MTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT 490 (881)
T ss_pred HHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Confidence 001111111111 1 1233444444443333 1112334445555544 45678888888877766
Q ss_pred hCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 397 ANPTYAE-AYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 397 ~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
....... .|.....+-...|+...+..++++|+..-
T Consensus 491 y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~ 527 (881)
T KOG0128|consen 491 YGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV 527 (881)
T ss_pred CCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC
Confidence 6554444 77777777788899999999888887643
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.024 Score=48.40 Aligned_cols=150 Identities=12% Similarity=0.025 Sum_probs=98.7
Q ss_pred HHHHHHhCCCHH---HHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHH
Q 006937 54 YANILRSRNKFV---DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC---AHTHCGILYK 127 (625)
Q Consensus 54 ~a~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~ 127 (625)
.|..|.+..+.+ +|-..|+++++.- ..+.. +.....++....++.+.. +...++..+.
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~---------------~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~v 100 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAV---------------QAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEV 100 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 344455544443 6777777776532 11222 444445555555554432 4566788888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 207 (625)
..|++++|+..++.++....+ .. ..+.+-.+++.+...+|.+++|+..+...... .-.+......|.++...|+-
T Consensus 101 e~~~~d~A~aqL~~~l~~t~D-e~---lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKD-EN---LKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred hhccHHHHHHHHHHHHccchh-HH---HHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCch
Confidence 999999999999988864332 22 22445677888889999999999888664321 11234466789999999999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 006937 208 DTALGCYEKAALERPMY 224 (625)
Q Consensus 208 ~~A~~~~~~al~~~~~~ 224 (625)
++|...|+++++..+..
T Consensus 176 ~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 176 QEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHccCCh
Confidence 99999999999887543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.22 Score=47.86 Aligned_cols=166 Identities=25% Similarity=0.297 Sum_probs=96.3
Q ss_pred HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cC
Q 006937 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL----MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RG 239 (625)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g 239 (625)
...+++..+...+.++-.. ........++.+|... .+..+|..+|..+. ...++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 3457788888888877652 3346777888887763 46788999999543 45667889999999987 45
Q ss_pred CHHHHHHHHHHHHhcCCCcH-HHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cC
Q 006937 240 DLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----ML 314 (625)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~ 314 (625)
+..+|..+|+++.+...... .....++..+..-........+...|...|.++.... +..+...+|.+|.. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence 99999999999988754432 2233334333331000000112234555555554433 34444444444432 22
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 315 KFDMAIVFYELAFHFNPHCAEACNNLG 341 (625)
Q Consensus 315 ~~~~A~~~~~~al~~~~~~~~~~~~la 341 (625)
++.+|...|.++.+... ....+.++
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 44445555544444433 44444444
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.22 Score=46.43 Aligned_cols=206 Identities=14% Similarity=0.057 Sum_probs=130.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCC--------HHHHHhHHHHHHHhcCHHHHHHHHHHHHhc---CCC--c
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEK--DSGN--------VEAHIGKGICLQMQNMGRLAFDSFSEAVKL---DPQ--N 115 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~--~ 115 (625)
.++.++.....+++++++..|.+++.. .|.+ ......+|..+...|+..+-.......-.. -+. .
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 378888899999999999999999884 2222 246788999999999988766555443221 111 1
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh----C--C
Q 006937 116 ACAHTHCGILY-KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----D--P 188 (625)
Q Consensus 116 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~--~ 188 (625)
......+-... ...+..+.-+..+..+++-....... +..-.+-..+...|...++|.+|+......++. + +
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRt-FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRT-FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 11222222222 22234445555555555543222221 112223456778889999999999988776643 2 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALER-----P-M-YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (625)
Q Consensus 189 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~-~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 257 (625)
.-.+++..-..+|+...+..+|...+..|-... | . ....-..-|.++....+|.-|..+|-++++-...
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 235667777888999999999988888775432 2 1 1222334466677778999999999999876543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.031 Score=54.72 Aligned_cols=144 Identities=17% Similarity=0.046 Sum_probs=105.3
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHHH
Q 006937 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------------N------------PHC---AEACNNLGV 342 (625)
Q Consensus 292 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------~------------~~~---~~~~~~la~ 342 (625)
.+..+|-+.+++..++.++..+|+.+.|.+.+++++-. + +.| -.+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 34668999999999999999999999999988888632 1 112 234556677
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHc
Q 006937 343 IYKDRDNLDKAVECYQMALSIKPN-FSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDA 415 (625)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~ 415 (625)
.+.+.|-+..|+++.+-.+.++|. ++- +.+.+-....+.++++--++.++....... .-+..-+..+.++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 778889999999999999999988 655 444445555677777777777776554211 1235667777888888
Q ss_pred CCH---------------HHHHHHHHHHHhcCCCC
Q 006937 416 GSI---------------SLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 416 g~~---------------~~A~~~~~~al~~~p~~ 435 (625)
++. ++|...+.+|+...|.-
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 887 88888888888888753
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.29 Score=48.86 Aligned_cols=298 Identities=11% Similarity=-0.015 Sum_probs=165.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCCh--HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~la~~~ 201 (625)
.+.-..|+-+++...+.++-...+-....-......++.....+...++. +...+.+.......|.++......+..+
T Consensus 198 ~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l 277 (546)
T KOG3783|consen 198 SVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARIL 277 (546)
T ss_pred HHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHH
Confidence 33445566666766666655443222222111112222222333333332 4555566666677899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH-HHHHHhchhhh-
Q 006937 202 SELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKVK- 277 (625)
Q Consensus 202 ~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~l~~~~~- 277 (625)
...|+.+.|+..++..++..- -..-.++.+|.++.-+.+|..|...+....+.+.-..-.+..++ -++..-.....
T Consensus 278 ~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~ 357 (546)
T KOG3783|consen 278 SIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQG 357 (546)
T ss_pred HHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHh
Confidence 999998888888888776111 12335677888888899999999999888777654433333333 22221111111
Q ss_pred hcCCHHHHHHHHHHHHh---hCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHc--
Q 006937 278 LEGDINQGVAYYKKALY---YNWHYAD---AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE--ACNNLGVIYKDR-- 347 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~---~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~la~~~~~~-- 347 (625)
..++.++|..+++.... ..|++.. .....+.-+...+. .++.... .+..++.++..-
T Consensus 358 ~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-------------~~~~~~la~P~~El~Y~Wngf~~ 424 (546)
T KOG3783|consen 358 AGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-------------LNASILLASPYYELAYFWNGFSR 424 (546)
T ss_pred cccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------------ccccccccchHHHHHHHHhhccc
Confidence 13355555444443322 2222111 11111111111110 1111111 123333333221
Q ss_pred CCHHHHHHHHHHHHc---c-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----cHHHHHHHHHHHHHc
Q 006937 348 DNLDKAVECYQMALS---I-KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NPT----YAEAYNNLGVLYRDA 415 (625)
Q Consensus 348 ~~~~~A~~~~~~al~---~-~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~ 415 (625)
...++.. -++..++ . ++++ .--+..+|.++..+|+...|..+|...++. ..+ .|.+++.+|.+|..+
T Consensus 425 ~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~ 503 (546)
T KOG3783|consen 425 MSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDL 503 (546)
T ss_pred CChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc
Confidence 1222222 1111111 1 2222 225667899999999999999999988853 111 267999999999999
Q ss_pred CC-HHHHHHHHHHHHhcCCCC
Q 006937 416 GS-ISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 416 g~-~~~A~~~~~~al~~~p~~ 435 (625)
|. ..++..++.+|-+...++
T Consensus 504 ~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 504 GGGLKEARALLLKAREYASDY 524 (546)
T ss_pred ccChHHHHHHHHHHHhhcccc
Confidence 99 999999999999877554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00064 Score=41.08 Aligned_cols=27 Identities=48% Similarity=0.797 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 405 YNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
+.+||.+|..+|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666666666777777666664433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0013 Score=38.81 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666777777777777777777666665
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0076 Score=46.29 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=74.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHhHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCcHHHH
Q 006937 54 YANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNM-----------GRLAFDSFSEAVKLDPQNACAH 119 (625)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 119 (625)
+|..++.+|++-+|+++.+..+...+++. ..+..-|.++..+.. .-.+++.|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999888766 456667777765542 2358899999999999998888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 120 THCGILYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~ 145 (625)
+.+|.-+-....|+++..-.++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888777777788888888887765
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0027 Score=57.60 Aligned_cols=77 Identities=25% Similarity=0.197 Sum_probs=58.1
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+...+..|......|+.++|..+|+.+++..|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.++
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 44455667777777888888888888888888888888888887777777778888888888888877777666553
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0017 Score=38.66 Aligned_cols=30 Identities=40% Similarity=0.639 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (625)
++..+|.++..+|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555554
|
... |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.24 Score=49.40 Aligned_cols=95 Identities=6% Similarity=-0.079 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHH
Q 006937 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178 (625)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~ 178 (625)
+...+.+.......|+++...+..+..+...|+.+.|+..++..+. ..........++.+|.++.-+.+|..|-.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad 324 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-----IRMKQVKSLMVFERAWLSVGQHQYSRAAD 324 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555566667888888888888888888887777888877766 23333345557778888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHH
Q 006937 179 KYYEALKIDPHYAPAYYNLG 198 (625)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~la 198 (625)
.+....+.+.-+.-.|..++
T Consensus 325 ~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 325 SFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHHHHhhhhhhHHHHHHHH
Confidence 88887776554444444444
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.052 Score=53.16 Aligned_cols=74 Identities=22% Similarity=0.114 Sum_probs=50.8
Q ss_pred HHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC--------------------------CCcH---HHHHHHHHH
Q 006937 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------------------------PQNA---CAHTHCGIL 125 (625)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~---~~~~~la~~ 125 (625)
+..+|-+.+.++.++.++..+|+.+.|.+.+++++-.. +.|- .+++.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 46688899999999999999999999988888886321 1111 133444455
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 006937 126 YKDEGRLVEAAESYHKALSADPS 148 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~ 148 (625)
+.+.|-+..|.++.+-.+.++|.
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCC
Confidence 55666666666666666666666
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.082 Score=44.07 Aligned_cols=100 Identities=12% Similarity=-0.045 Sum_probs=83.0
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
-...++.........++.+++..++..+--..|+.++.-..-|..++..|++.+|+..|+.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 35668888888899999999999999998899999999999999999999999999999999888999998888999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC
Q 006937 127 KDEGRLVEAAESYHKALSADP 147 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~ 147 (625)
...|+.+ =..+-..+++..+
T Consensus 89 ~~~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 89 YALGDPS-WRRYADEVLESGA 108 (160)
T ss_pred HHcCChH-HHHHHHHHHhcCC
Confidence 8888754 2223344444443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0055 Score=59.16 Aligned_cols=142 Identities=12% Similarity=0.022 Sum_probs=103.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (625)
Q Consensus 312 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (625)
..|+.-.|-+-+..++...|..+......+.+...+|.|+.|...+..+-..-.....+...+-.-...+|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 45777777777777777777777777777888888888888877776555443344445555556667788888888888
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCC
Q 006937 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453 (625)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 453 (625)
+-.+...-+++++...-+-.-..+|-+++|..++++.+.++|....-+.|.+....|...|+
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 77777666667766666666677788888888888888888887777777766666776665
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.58 Score=46.29 Aligned_cols=347 Identities=13% Similarity=0.025 Sum_probs=187.8
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
.+...|+.......+.+.+.+--.+|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|...-.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 3778888888888888999999999999999999999999999998887776 999999999999999999877644322
Q ss_pred HHHH---------------cCCHH-------HH-----------------H--HHH--------------HHHHhcCCCC
Q 006937 125 LYKD---------------EGRLV-------EA-----------------A--ESY--------------HKALSADPSY 149 (625)
Q Consensus 125 ~~~~---------------~g~~~-------~A-----------------~--~~~--------------~~al~~~~~~ 149 (625)
+-.. .++.+ .+ + ... +-.....|.+
T Consensus 183 mEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~n 262 (568)
T KOG2396|consen 183 MELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDN 262 (568)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 1110 00000 00 0 000 0011124444
Q ss_pred HHHHHHHHHHHH--------------HhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHH--cC-CHHHH
Q 006937 150 KPAAECLAIVLT--------------DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA--YYNLGVVYSE--LM-QYDTA 210 (625)
Q Consensus 150 ~~~~~~~a~~~~--------------~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~--~~~la~~~~~--~~-~~~~A 210 (625)
+..+..++.-.. ..+.. ...+-+....+|+.+++.-+...-- +.....-... .| ....-
T Consensus 263 p~~~~~laqr~l~i~~~tdl~~~~~~~~~~~--~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~ 340 (568)
T KOG2396|consen 263 PLLWDDLAQRELEILSQTDLQHTDNQAKAVE--VGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHT 340 (568)
T ss_pred CccHHHHHHHHHHHHHHhhccchhhhhhchh--cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 444433332110 01100 0011222224444444433332111 1111111111 11 22333
Q ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCcHHHHhhHHHHHHH---------------
Q 006937 211 LGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAI-ACYERCLAVSPNFEIAKNNMAIALTD--------------- 271 (625)
Q Consensus 211 ~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~--------------- 271 (625)
...++++.+. .+..+.-+..+..++...+...++. ......+. ++...+.........
T Consensus 341 ~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~---~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~ 417 (568)
T KOG2396|consen 341 MCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFR---DSGKMWQLKLQVLIESKSDFQMLFEELFNH 417 (568)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhc---chHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 3444444332 2333444444444444433322221 11111111 111111110000000
Q ss_pred ----hchh------hhhcCC-HHHHH-H-HHHHHHhh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 006937 272 ----LGTK------VKLEGD-INQGV-A-YYKKALYY-NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337 (625)
Q Consensus 272 ----l~~~------~~~~~~-~~~A~-~-~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 337 (625)
++.. ...+++ ..... . ++..+... .++....-..+-..+.+.+-+.+|...|.+...+.|-+...+
T Consensus 418 ~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~ 497 (568)
T KOG2396|consen 418 LRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLF 497 (568)
T ss_pred HHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHH
Confidence 0000 000111 11111 1 11111111 233344455566777888999999999999999998887777
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 338 NNLGVIYKD--RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 338 ~~la~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
..+..+-.. .-+..-+..+|+.++.....+++.|...-..-...|..+.+-..+.+|++.
T Consensus 498 r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 498 RKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 666554332 235788899999999988899999999888888999999998888888764
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0045 Score=56.19 Aligned_cols=64 Identities=28% Similarity=0.386 Sum_probs=35.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
.+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+|+.++|.+.++..|+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 3445555555555555555555555555555555555555555555555555555555554443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.1 Score=46.85 Aligned_cols=196 Identities=12% Similarity=-0.018 Sum_probs=119.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCH----HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC-----Cc-HHHHHHHHHHHHHc
Q 006937 60 SRNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-----QN-ACAHTHCGILYKDE 129 (625)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~-~~~~~~la~~~~~~ 129 (625)
...+.++|+.-|+++++..+... .++-.+..+.+++|++++-+..|.+.+..-. +. ......+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34589999999999999988754 4677788899999999999999988775311 11 11111111111122
Q ss_pred CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC------------CCHHHHH
Q 006937 130 GRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------HYAPAYY 195 (625)
Q Consensus 130 g~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------------~~~~~~~ 195 (625)
.+.+--.+.|+..+..- ..+...|+. .-..+|.+++..+.|.+-.+.+.+.-.... .-.++|.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFK---TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFK---TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeee---ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 33333333444333211 111111111 133577777777888777777666543311 1234555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALERPMY--AEAY----CNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (625)
.-...|..+.+..+-...|++++.+...- +.+. -.=|..+.+.|++++|..-|-++++.....
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 55677888888888888999998765332 2221 122556788899999999888888765543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.82 Score=47.05 Aligned_cols=175 Identities=17% Similarity=0.099 Sum_probs=88.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH---------HHHHHHHHH
Q 006937 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---------CAHTHCGIL 125 (625)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~ 125 (625)
...+...=..++|+++ ++.+| ++..|..+|......-.++-|...|-+.-.. +.-. .--...+.+
T Consensus 670 ~~~Lve~vgledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei 743 (1189)
T KOG2041|consen 670 VMNLVEAVGLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEI 743 (1189)
T ss_pred HHHHHHHhchHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhH
Confidence 3344455556777766 44455 6788999998888888888888777664321 1100 001223444
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSE 203 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~ 203 (625)
-.--|++++|.+.|-.+-+. +.. ...+.+.|++-...++++..-.-+ .....++.++|..+..
T Consensus 744 ~~~~g~feeaek~yld~drr---DLA------------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~ 808 (1189)
T KOG2041|consen 744 SAFYGEFEEAEKLYLDADRR---DLA------------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE 808 (1189)
T ss_pred hhhhcchhHhhhhhhccchh---hhh------------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH
Confidence 44557777777776543211 000 011222344444443333211110 1113344555555555
Q ss_pred cCCHHHHHHHHHHH----------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 204 LMQYDTALGCYEKA----------------------ALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (625)
Q Consensus 204 ~~~~~~A~~~~~~a----------------------l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (625)
...+++|.++|.+. ...-|++...+-.+|..+...|--++|.+.|-+
T Consensus 809 ~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 809 MMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 55555555554432 222355555566666666666666666665544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0032 Score=37.06 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=12.7
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 006937 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (625)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (625)
++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34444444444444444444444444444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=1.3 Score=47.37 Aligned_cols=125 Identities=8% Similarity=-0.086 Sum_probs=65.7
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
.+..+..|....+.|++..+.....++ ...|- ..+...-......+.. ....+...++.+|+.+..-........
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~~l~ 107 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSRFVN 107 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 467888999999999998887766653 33443 2222222222222211 122445556667776655444443332
Q ss_pred ---HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC
Q 006937 128 ---DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (625)
Q Consensus 128 ---~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 188 (625)
+.+++..-+.++ ...|.+... .+..+......|+.++|.....++.....
T Consensus 108 ~La~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~G~~~~A~~~a~~lW~~g~ 160 (644)
T PRK11619 108 ELARREDWRGLLAFS----PEKPKPVEA-------RCNYYYAKWATGQQQEAWQGAKELWLTGK 160 (644)
T ss_pred HHHHccCHHHHHHhc----CCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCC
Confidence 344555444422 123554443 23344455666777777666666554433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.24 Score=44.63 Aligned_cols=194 Identities=16% Similarity=0.161 Sum_probs=116.0
Q ss_pred hcCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhHH
Q 006937 95 QNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSAD-----PSYKPAAECLAIVLTDLGT 165 (625)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~a~~~~~l~~ 165 (625)
..+.++|+..|++++++.+... .++..+..+++++|++++-.+.|.+.+..- .+..+-. ...+-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs------IN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS------INSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHH------HHHHHH
Confidence 3478999999999999988653 477788899999999999999998887531 1111110 001101
Q ss_pred HHHHhCChHHHHHHHHHHHhh--CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHH
Q 006937 166 SLKLAGNTQDGIQKYYEALKI--DPHYAP----AYYNLGVVYSELMQYDTALGCYEKAALERP------------MYAEA 227 (625)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~--~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------~~~~~ 227 (625)
.-....+.+--.+.|+..++. +..+.. .-..+|.+|+..+.|.+-.+.+++.-+... ...++
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 111122222233333333222 112222 234688999999988888777777654321 12345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
|..-..+|..+.+..+-...|++++.+...-+.. ..++.+-..-|..+...|++++|-.-|-++.+.
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 5555677777777777777888887665433321 123444444456666677777776666666544
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0067 Score=40.00 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
.++.+|..+.++|++++|..+.+.++++.|+|..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566667777777777777777777777777666543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.038 Score=41.59 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHH
Q 006937 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN--ACAHTHCGILYKDEGRLVEAA 136 (625)
Q Consensus 67 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~ 136 (625)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+.-.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv 78 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLV 78 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHH
Confidence 3566778888899999999999999999999999999999998887764 444445555555555443333
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.74 Score=43.14 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 269 (625)
.+..+|...++|.+|+......+.. .+.-.+++..-..+|....+..+|...+..+-.....-.-.....+.+-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 3455666666666666655554431 1122344444555566666666666555554332111100111122233
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 270 TDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
..-|-++....+|..|..+|-++++-
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred HhccceeecccccchHHHHHHHHHcc
Confidence 33344444455566666665555543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.021 Score=52.93 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4455566666677777777777777777777776666677777777777777777777777777666553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.79 Score=46.73 Aligned_cols=28 Identities=21% Similarity=0.005 Sum_probs=20.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIV 74 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 74 (625)
....|-.+|...+..=+++-|.+.|.++
T Consensus 584 v~~DW~~LA~~ALeAL~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 584 TDTDWRELAMEALEALDFETARKAYIRV 611 (1081)
T ss_pred ecchHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3456777788888888888888877765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.74 Score=47.34 Aligned_cols=253 Identities=14% Similarity=0.038 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---HHhHHHHHHhCChH
Q 006937 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL---TDLGTSLKLAGNTQ 174 (625)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~---~~l~~~~~~~~~~~ 174 (625)
.++|+++.+ .+| ++..|..++......-.++-|...|-+.-.. +.-. ....+..++ ...+.+..--|.++
T Consensus 679 ledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik-~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIK-LVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchh-HHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 455555443 344 6789999999888888888888877665322 1110 001111111 12333444458999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (625)
Q Consensus 175 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (625)
+|.+.|-.+-..+ .-..++.+.|+|-...++++..-... .....++.++|..+..+..+++|.++|...-
T Consensus 752 eaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred Hhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998886543322 11245567777777766665432211 1235689999999999999999999998763
Q ss_pred hcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 006937 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (625)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 332 (625)
... +...+++.+ ..+++- +.....-|++...+-.+|..+...|--++|.+.|-+.- .|.
T Consensus 824 ~~e--------~~~ecly~l-------e~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk 882 (1189)
T KOG2041|consen 824 DTE--------NQIECLYRL-------ELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK 882 (1189)
T ss_pred chH--------hHHHHHHHH-------HhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH
Confidence 221 233444443 233332 33334457778888888999999998888888775431 111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (625)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (625)
+ .......++++.+|.+..++-- -|.-.......+.-+...++.-+|++..+++
T Consensus 883 ---a---Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 ---A---AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred ---H---HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 1123344456666666544321 1222223333344445556666666666555
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.29 Score=49.37 Aligned_cols=133 Identities=20% Similarity=0.145 Sum_probs=108.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 313 MLKFDMAIVFYELAFHFNPHCAEACNN--LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (625)
Q Consensus 313 ~~~~~~A~~~~~~al~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 390 (625)
.+....++..+...+.+++.++..+.. +...+...+....+.-.+..++..+|++..+..+++......|....+...
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 344445677777777788888877544 477777788888999999999999999999999999998888877776665
Q ss_pred HHH-HHHhCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 006937 391 IEK-AIAANPTYAEAYNNL------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (625)
Q Consensus 391 ~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (625)
+.. +....|.+.+....+ +.....+|+..++....+++..+.|.++.....++.+
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 555 888889887766555 8999999999999999999999999998777766555
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.23 Score=40.67 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=72.9
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
...++.........++..++..++..+--..|+.++.-..-|..+...|++.+|+..|+...+..+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 44566777777779999999999998888899999999999999999999999999999988888787888888888888
Q ss_pred HcCCHH
Q 006937 128 DEGRLV 133 (625)
Q Consensus 128 ~~g~~~ 133 (625)
.+|+.+
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 888754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.095 Score=43.70 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006937 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (625)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (625)
.+..+..+-...++.+++...+...--+.|+.++.-..-|+++...|++.+|+..|+.+.+..|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34444455555666677777776666667777777777777777777777777777777666676676666777777777
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 006937 416 GSISLAIDAYEQCLKIDP 433 (625)
Q Consensus 416 g~~~~A~~~~~~al~~~p 433 (625)
|+.. =..+-.++++..+
T Consensus 92 ~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 92 GDPS-WRRYADEVLESGA 108 (160)
T ss_pred CChH-HHHHHHHHHhcCC
Confidence 7653 2333444555544
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.17 Score=39.23 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=55.9
Q ss_pred HHcCCHHHHHHHHHHHHccCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCcH---
Q 006937 345 KDRDNLDKAVECYQMALSIKPN------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYA--- 402 (625)
Q Consensus 345 ~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~--- 402 (625)
+..|-|++|...+.++++.... +.-++..|+..+..+|+|++++...++++.. +.+..
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 3446677777777776665321 1235666777777777777776666666543 44433
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 403 -EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 403 -~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
.+-++.+..+..+|+.++|+..|+++-++
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34567788889999999999999988764
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.042 Score=41.34 Aligned_cols=48 Identities=29% Similarity=0.303 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 456777788888888888888888888888888888888888887776
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.019 Score=37.92 Aligned_cols=34 Identities=15% Similarity=-0.040 Sum_probs=15.9
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHH
Q 006937 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (625)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (625)
++.+|..+++.|+|++|..+.+.+++..|++..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4444445555555555555555555555544443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0086 Score=36.07 Aligned_cols=25 Identities=48% Similarity=0.745 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 371 LNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
+.++|.+|...|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555555555533
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.079 Score=49.23 Aligned_cols=68 Identities=19% Similarity=0.106 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 006937 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (625)
Q Consensus 194 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (625)
..++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|..-++..++..|+++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34445555666666666666666666666666666666666666666666666666666666655544
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.079 Score=47.54 Aligned_cols=92 Identities=25% Similarity=0.238 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHH-------HHHHHHHHHhhCCC------CHHHHH
Q 006937 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD-------GIQKYYEALKIDPH------YAPAYY 195 (625)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~-------A~~~~~~~l~~~~~------~~~~~~ 195 (625)
...+++|++.|.-++-...-.......+|.++..++.+|...|+.+. |++.|++++..... ...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34566666666665532111111111346667777777777777443 33344444333211 134555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALE 220 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~ 220 (625)
.+|.+..+.|++++|.++|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 5666666666666666666666554
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.089 Score=40.59 Aligned_cols=103 Identities=13% Similarity=-0.007 Sum_probs=58.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC
Q 006937 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (625)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (625)
++.-++..|++-+|+++.+..+..++++. ..+..-|.++..+ +...+..+...-+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yL--------- 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYL--------- 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHH---------
Confidence 35566777777777777777777766554 3334444444322 22222111121111
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
-.+++++.++..+.|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus 61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 23566677777777777667777766665556666666666666654
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.012 Score=34.18 Aligned_cols=31 Identities=39% Similarity=0.673 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
++..+|.++..+|++++|...|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566677777777777777777777766664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.014 Score=50.97 Aligned_cols=66 Identities=29% Similarity=0.504 Sum_probs=57.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
....+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|++......
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~ 68 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhh
Confidence 345677889999999999999999999999999999999999999999999999999988655433
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.92 E-value=3.7 Score=45.59 Aligned_cols=134 Identities=14% Similarity=0.069 Sum_probs=88.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAE---CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 199 (625)
..++...+.|++|+..|++.-...|...+.+. ..+..+...+........+.+|+..|++.- -.|..+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 35677788999999999999999988665433 233333333322222235778888887643 35677788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCC
Q 006937 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----GDLESAIACYERCLAVSPN 257 (625)
Q Consensus 200 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~ 257 (625)
+|..+|++++-++++.-+++..|+.|..-...-.+..++ ..-..|....--++...|.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPE 623 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999988765433332222221 1223444444455555554
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.3 Score=40.41 Aligned_cols=216 Identities=14% Similarity=-0.006 Sum_probs=119.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC--------CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 52 LSYANILRSRNKFVDALALYEIVLEKDS--------GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
+++|+...+.+++++|+..|.+++...- +.......++..|...|++..--+.....- +++....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr-------e~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR-------EAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH-------HHHHHhc
Confidence 7889999999999999999999987621 122456778888888887765443333221 1111111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (625)
-.+..+..+..++..|..++.......+...+. +=|.+-=+..++ ...-..+..++++
T Consensus 80 --------k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~i---------ewA~rEkr~fLr-----~~Le~Kli~l~y~ 137 (421)
T COG5159 80 --------KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALI---------EWADREKRKFLR-----LELECKLIYLLYK 137 (421)
T ss_pred --------chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH---------HHHHHHHHHHHH-----HHHHHHHHHHHHh
Confidence 112233444444444443332111111111110 001110011111 1233456778889
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhh
Q 006937 204 LMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (625)
Q Consensus 204 ~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (625)
.|+|.+|+......+.. .++-..++..-..+|....+..++...+..+-.....-.-.....+.+-..-|-...
T Consensus 138 ~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhc 217 (421)
T COG5159 138 TGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHC 217 (421)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceee
Confidence 99999999888776532 344566777778888888888887777766543321111111122333444455666
Q ss_pred hcCCHHHHHHHHHHHHhhC
Q 006937 278 LEGDINQGVAYYKKALYYN 296 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~ 296 (625)
...++..|..+|-++++-.
T Consensus 218 dd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 218 DDRDYKTASSYFIEALEGF 236 (421)
T ss_pred ccccchhHHHHHHHHHhcc
Confidence 6778888888888887654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.6 Score=43.25 Aligned_cols=49 Identities=8% Similarity=-0.115 Sum_probs=28.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q 006937 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109 (625)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (625)
..+...|.+++|...----+. ..-|..+|......=+++-|.+.|.++-
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVR 612 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVR 612 (1081)
T ss_pred hhhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 356778888877654211111 1235566666666667777777776653
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.5 Score=36.76 Aligned_cols=95 Identities=20% Similarity=0.122 Sum_probs=71.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------------CHHHHHhHHHHHHHhcCHHHHHHHHHHHHh-------c
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSG------------NVEAHIGKGICLQMQNMGRLAFDSFSEAVK-------L 111 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~ 111 (625)
.+..|...+..|-|++|...++++++.... ++-++..++..+..+|+|++++....+++. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 345677888999999999999999875321 234677888999999999998888777775 3
Q ss_pred CCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 112 DPQNAC----AHTHCGILYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 112 ~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (625)
+.+... +.+..+..+...|+.++|+..|+.+-+.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444433 4567788889999999999999988653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.1 Score=37.69 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=95.7
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCC
Q 006937 310 YGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGK 383 (625)
Q Consensus 310 ~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~ 383 (625)
+...++.++|+..|...-+..-.. .-+....+.+..+.|+...|+..|..+-.-.|.- ..+...-+.++...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456678889999888877665443 3456778889999999999999999887654332 1245566777888899
Q ss_pred HHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 384 MDAAAEMIEKAI-AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 384 ~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
|++-....+..- ..+|-...+...||..-.+.|++.+|...|.+... +.+.+....+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirq 205 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQ 205 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHH
Confidence 988776665442 22455567888899999999999999999999887 3333433333
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.14 Score=40.85 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 367 FSQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 367 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
.....+++++++.... +..+.+.+++..++ -.|+. -+..+.|+..+.+.|+|++++.+.+..++..|+|.++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3567778888887655 45667888888886 44433 467788888899999999999999999999999887753
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.25 Score=42.90 Aligned_cols=103 Identities=11% Similarity=-0.110 Sum_probs=74.6
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006937 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (625)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 159 (625)
.++..+|..|.+.|+.++|++.|.++...... ..+.++.+..+....+++........++-..... ...+.....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 57889999999999999999999998776543 2456778888889999999999998888665333 2223334444
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
-...|..+...++|.+|.+.|-.+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 555566666677777777777665443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.12 Score=57.03 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=125.6
Q ss_pred HHhchhhhhcCCHHHHHH------HHH-HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCH
Q 006937 270 TDLGTKVKLEGDINQGVA------YYK-KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCA 334 (625)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~------~~~-~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~ 334 (625)
...|......+.+.++.+ ++. ..-.+.|.....+..++.++...+++++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 344444455666776666 444 233457788889999999999999999999988877654 35567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------- 399 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------- 399 (625)
..+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+++.|+..+.
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 78889999999999999999999988865 355556778899999999999999999999998642
Q ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 400 -TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 400 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
.....+..+++++..++++..|....+....+
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 23456777888888888888888877766554
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.1 Score=45.82 Aligned_cols=100 Identities=21% Similarity=0.167 Sum_probs=86.4
Q ss_pred HHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 006937 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228 (625)
Q Consensus 155 ~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 228 (625)
.+-.++.+-+.-.++..+|..+++.|...+..-|.+ ......++.||..+.+.+.|.+++++|-+.+|.++-..
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 344456777888889999999999999998876654 45678899999999999999999999999999999988
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 229 CNMGVIYKNRGDLESAIACYERCLAV 254 (625)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~al~~ 254 (625)
..+-.+....++-++|+.+.......
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 88889999999999999998877654
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.16 Score=45.62 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (625)
..+.+.+|.+..+.|++++|..+|.+++..
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 345566666666666666666666666654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.4 Score=37.13 Aligned_cols=145 Identities=17% Similarity=0.105 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH--HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC--c--HHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNV--EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ--N--ACAHTHC 122 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~l 122 (625)
...+..|..+.+.++.++|+..|..+-+..-.+. -+.+..+.+....|+...|+..|..+-...|- - -.+...-
T Consensus 59 gd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 59 GDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 3456667777778888888888888766544433 35566677777888888888888876654332 1 1234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (625)
+.++...|-|++-....+..-. +.++. ...+-..||...++.|++.+|.+.|.++.. +...+....+.+.+
T Consensus 139 a~lLvD~gsy~dV~srvepLa~--d~n~m----R~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAG--DGNPM----RHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHhccccHHHHHHHhhhccC--CCChh----HHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 5666677777766555443321 11111 011234455556666666666666666554 33334444444433
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.14 Score=50.59 Aligned_cols=105 Identities=14% Similarity=0.046 Sum_probs=90.9
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHh---cCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAHTHC 122 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (625)
..++..+..|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++.+
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~l 451 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRL 451 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHH
Confidence 45566666677777777889999999999999999999999999988765 566778888899999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYK 150 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (625)
+.++...+++.+|+.+...+....|.+.
T Consensus 452 a~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 452 ARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 9999999999999999998888888543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.34 Score=39.68 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006937 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (625)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (625)
.++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++...+..+..+-..-.++.|+..+|+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 455555555555555555555555555555555555555555555555555544455555555555555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.25 Score=54.66 Aligned_cols=137 Identities=16% Similarity=0.068 Sum_probs=97.8
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHH------HHHHH-HHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc-------
Q 006937 46 FEGKDALSYANILRSRNKFVDALA------LYEIV-LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------- 111 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 111 (625)
..++...+.+......|.+.+|.+ ++... -...|.....+..++..+...|++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 567788899999999999998888 55533 2357888899999999999999999999988877643
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHh
Q 006937 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (625)
Q Consensus 112 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 185 (625)
.|+....+..++...+..++...|+..+.++..+ .|..+.. +.+..+++.++...++++.|+++.+.++.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~----a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT----ALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch----hhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888888888777654 2222221 22344455555555666666666666655
Q ss_pred h
Q 006937 186 I 186 (625)
Q Consensus 186 ~ 186 (625)
.
T Consensus 1086 ~ 1086 (1236)
T KOG1839|consen 1086 K 1086 (1236)
T ss_pred H
Confidence 4
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.5 Score=37.83 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006937 334 AEACNNLGVIYKDRD---NLDKAVECYQMALS-IKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (625)
Q Consensus 334 ~~~~~~la~~~~~~~---~~~~A~~~~~~al~-~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (625)
....+++++++.... +..+.+.+++..++ -.|. .-+..+.++..+.+.|+|++++.+.+..++..|++.++...
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 445556666665543 34556666666665 3332 23466666777777777777777777777777776665443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.036 Score=48.48 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=39.0
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006937 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (625)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (625)
....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 345566666666666666666666666666666666666666666666666666666543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.038 Score=31.82 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=12.8
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 006937 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (625)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (625)
+..+|.++...|++++|+..++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444444444444444444444444433
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.12 E-value=4 Score=40.78 Aligned_cols=81 Identities=12% Similarity=-0.022 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (625)
Q Consensus 172 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (625)
.+.-....+.+++... .+-.+++.++.+|... ..++-....++.++.+-++...-..++..|.+ ++.+.+..+|.++
T Consensus 81 k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 81 KNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHH
Confidence 3344455666666654 4567888999999988 56778888999999988888888888888877 8889999999998
Q ss_pred HhcC
Q 006937 252 LAVS 255 (625)
Q Consensus 252 l~~~ 255 (625)
+...
T Consensus 158 ~yrf 161 (711)
T COG1747 158 LYRF 161 (711)
T ss_pred HHHh
Confidence 7653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.43 Score=41.51 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (625)
Q Consensus 192 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (625)
.++..+|..|.+.|+.++|++.|.++.+.... ..+.++.+..+....+++.....+..++-...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45667778888888888888888877665433 24566677777777788887777777765543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.085 Score=52.02 Aligned_cols=84 Identities=18% Similarity=0.112 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (625)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (625)
...|+..|.+++...|.....+.+.+.++.+. |+.-.|+.....+++++|....+++.|+.++..++++.+|+++..
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 34445555555555555555555555554443 234444444555555555555555555555555555555555555
Q ss_pred HHHhcCC
Q 006937 427 QCLKIDP 433 (625)
Q Consensus 427 ~al~~~p 433 (625)
.+....|
T Consensus 470 alq~~~P 476 (758)
T KOG1310|consen 470 ALQMSFP 476 (758)
T ss_pred HHhhcCc
Confidence 4444444
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.6 Score=42.71 Aligned_cols=104 Identities=17% Similarity=0.084 Sum_probs=73.5
Q ss_pred hCCCHHHHHHHHHHHHHc------------CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc----------------
Q 006937 60 SRNKFVDALALYEIVLEK------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---------------- 111 (625)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------- 111 (625)
....|++|...|.-+... .|-+.+.++.++.+...+|+.+-|....++++=.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345677888877776654 4666789999999999999999888888777632
Q ss_pred -----CCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Q 006937 112 -----DPQNAC---AHTHCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTDL 163 (625)
Q Consensus 112 -----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~l 163 (625)
.|.|-. +++..-..+.+.|-+..|.++++-+++++|. ++-....+..++...
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 223322 2333345566789999999999999999998 666544444434333
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.67 E-value=4.6 Score=41.49 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (625)
+.+-|.-.++..+|..+++.|...+...|.+...... +.+...+..+|....+.+.|.++++++-+.+|.++-......
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3445667788899999999999999988877655443 888999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 006937 199 VVYSELMQYDTALGCYEKAALE 220 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~ 220 (625)
.+....+.-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999998887654
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.4 Score=34.32 Aligned_cols=64 Identities=14% Similarity=-0.010 Sum_probs=45.8
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhH---HHHHHHhcCHHHHHHHHHHHHh
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK---GICLQMQNMGRLAFDSFSEAVK 110 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~ 110 (625)
.+...++.|..++...+.++|+..++++++..++...-+..+ ..++...|+|.+.+.+..+=+.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888888888888877766544444 4556777888877776654443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.1 Score=32.49 Aligned_cols=29 Identities=38% Similarity=0.554 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
.++.++|.+|..+|++++|..++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777764
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.09 Score=48.23 Aligned_cols=78 Identities=6% Similarity=0.041 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN-LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 364 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
.++++..|...+....+.|.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.+++.++|+++..|..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34444444444444444444444445555555555555444433 2333444455555555555555555555544443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.9 Score=43.67 Aligned_cols=165 Identities=15% Similarity=0.039 Sum_probs=94.6
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHH--HHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYE--IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
+.-.-.-+....+|+++++....+ +++..-| .......+..+.++|..+.|+.... ++...+ .+.
T Consensus 262 d~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF---eLA 328 (443)
T PF04053_consen 262 DLSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------DPDHRF---ELA 328 (443)
T ss_dssp -HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHH---HHH
T ss_pred CHHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHh---HHH
Confidence 334445566778999999888775 2222222 3445667777888888888876543 344444 445
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
.+.|+++.|.+..++. ++.. .|..+|.....+|+++-|.++|+++- -+..|..+|...|+
T Consensus 329 l~lg~L~~A~~~a~~~-----~~~~-------~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL-----DDPE-------KWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGD 388 (443)
T ss_dssp HHCT-HHHHHHHCCCC-----STHH-------HHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-
T ss_pred HhcCCHHHHHHHHHhc-----CcHH-------HHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCC
Confidence 6788988888765432 2333 28888888899999999999988753 24456667777888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (625)
.+.-.+..+.+......+ ..-.++...|+.++.++.+.+.
T Consensus 389 ~~~L~kl~~~a~~~~~~n-----~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 389 REKLSKLAKIAEERGDIN-----IAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHHTT-HH-----HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHH-----HHHHHHHHcCCHHHHHHHHHHc
Confidence 766666665555443321 1223444556667666666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.19 Score=46.26 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=63.0
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHh-HHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG-KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
..++..|...+......|-|.+--.+|.++++.+|.+++.|.. .+.-+...++++.+...|.++++.+|+++..|...-
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 3467778888888888888888888888888888888888876 455577788888888888888888888887776543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.17 Score=31.49 Aligned_cols=29 Identities=38% Similarity=0.657 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45667777777777777777777777664
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.77 E-value=4.5 Score=41.08 Aligned_cols=103 Identities=12% Similarity=0.112 Sum_probs=74.2
Q ss_pred hCChHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----h------------
Q 006937 170 AGNTQDGIQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL-----E------------ 220 (625)
Q Consensus 170 ~~~~~~A~~~~~~~l~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~------------ 220 (625)
...|++|...|.-+... .|-+...+..++.+...+|+.+.|....++++= .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 35577888888777654 566788999999999999999998888888752 1
Q ss_pred ----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHHh
Q 006937 221 ----RPMYAE---AYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDL 272 (625)
Q Consensus 221 ----~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~l 272 (625)
.|.+-. +++..-..+.+.|-+..|.++++-.+.++|. ++.....+...|...
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 122222 3334445566789999999999999999998 765554444444443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=12 Score=40.11 Aligned_cols=77 Identities=10% Similarity=-0.073 Sum_probs=48.3
Q ss_pred HHHHHHHcCCCCHHHHHhHHHHHHH---hcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 70 LYEIVLEKDSGNVEAHIGKGICLQM---QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (625)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 146 (625)
-+...++.+|+.+..-......... .+++..-+.+ ....|.+.......+......|+.++|....+++-...
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~----~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF----SPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh----cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 4445566677777655554444433 4455544442 22347778877888888889999888888777776554
Q ss_pred CCCH
Q 006937 147 PSYK 150 (625)
Q Consensus 147 ~~~~ 150 (625)
...+
T Consensus 160 ~~~p 163 (644)
T PRK11619 160 KSLP 163 (644)
T ss_pred CCCC
Confidence 4333
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.35 E-value=3.6 Score=39.99 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 006937 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG----KMDAAAEMIE 392 (625)
Q Consensus 319 A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~ 392 (625)
-+.+...+++.+|++..+|+....++.+.+ ++..=++..+++++.+|.+..+|...-.+..... ...+-+++..
T Consensus 94 eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt 173 (421)
T KOG0529|consen 94 ELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTT 173 (421)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHH
Confidence 333444444444444444444444444333 2344444555555555544444333322222211 1334445555
Q ss_pred HHHHhCCCcHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhcCCCChhhhhh
Q 006937 393 KAIAANPTYAEAYNNLGVLYRD------AGS------ISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
+++..++.+-.+|.....++.. .|+ ...-++.-..|+-.+|++..+|..
T Consensus 174 ~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 174 KLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 5555555555555544444431 221 223345555566666776666554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.29 E-value=8.5 Score=39.08 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006937 299 YADAMYNLGVAYGEMLKFDMAIVFYELA 326 (625)
Q Consensus 299 ~~~~~~~la~~~~~~~~~~~A~~~~~~a 326 (625)
+...|..||.....+|+++-|.++|+++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3445555555555555555555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.11 E-value=9.3 Score=37.32 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHHH
Q 006937 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG--KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG----SISLAI 422 (625)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~ 422 (625)
-.++-+.+...+++.+|+.-.+|..+.+++.+.+ ++..-+..++++++.+|.+-.+|...-.+..... ...+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 4577788888999999999999999999998776 4688889999999999988777765554444332 245667
Q ss_pred HHHHHHHhcCCCChhhhhhHHHHhh
Q 006937 423 DAYEQCLKIDPDSRNAGQNRLLAMN 447 (625)
Q Consensus 423 ~~~~~al~~~p~~~~~~~~~~~~~~ 447 (625)
++..+++.-++.|..+|.++.+.+.
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHH
Confidence 8888888889999999888765554
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=93.11 E-value=7.6 Score=36.31 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc
Q 006937 221 RPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAV 254 (625)
Q Consensus 221 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~ 254 (625)
.|...+.+...+. -|...++...|...+....+.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4444555554443 356678888888877666654
|
; PDB: 3LKU_E 2WPV_G. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.63 Score=44.87 Aligned_cols=92 Identities=21% Similarity=0.176 Sum_probs=74.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC--------CCC-----H-----HHHHhHHHHHHHhcCHHHHHHHHHHHHhcC
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKD--------SGN-----V-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~~-----~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (625)
.+.-|..++++++|..|.--|+.+++.. |.. . .+--.+..||+.+++.+.|+....+.+.++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 3456778899999999998888888752 211 1 233468899999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 113 PQNACAHTHCGILYKDEGRLVEAAESYHKA 142 (625)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (625)
|....-+...|.++..+.+|.+|...+--+
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987765443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.54 E-value=3.2 Score=38.72 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=49.9
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (625)
..++..++..+...|+++.++..+++.+..+|-+-..|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3456667777778888888888888888888888888888888888888888888888776553
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.48 Score=28.32 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 006937 404 AYNNLGVLYRDAGSISLAIDA--YEQCLKIDPD 434 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 434 (625)
.++.+|..+..+|++++|+.. |+-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 455566666666666666666 3355555554
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.1 Score=41.01 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (625)
Q Consensus 194 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (625)
..++=..+...++++.|..+.++.+..+|+++.-+.-.|.+|.+.|.+.-|++.++..++..|+.+.+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 334445566667777777777777777777776677777777777777777777777777777665443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.81 Score=34.90 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=36.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAA--ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
..+.|++.+|++.+.+.+.......... ......+..++.+....|++++|+..+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567888888888877776543322211 122333555666666666666666666666655
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=92.37 E-value=1.7 Score=42.16 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=71.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 006937 122 CGILYKDEGRLVEAAESYHKALSAD-----------PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~-----------~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (625)
-|..++++++|..|..-|..++++. |...+....-..+...+..||...++.+-|+....+.+.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 3556677777777777777776652 22223333334456678888999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKA 217 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~a 217 (625)
..-+...|.++..+.+|.+|.+.+.-+
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999998887766544
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.35 E-value=9 Score=35.29 Aligned_cols=134 Identities=11% Similarity=0.006 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH---HHhhC--CCCHHH
Q 006937 120 THCGILYKDEGRLVEAAESYHKALSADPSY-KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE---ALKID--PHYAPA 193 (625)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~---~l~~~--~~~~~~ 193 (625)
..+++-..+.+++++|+..|.+.+...-.. .......-.....++..|...|++..--+.... +.... |.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 344555566667777777777766542221 111122222355667777777766543333322 22111 111111
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 194 YYNLGVVY-SELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLA 253 (625)
Q Consensus 194 ~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (625)
...+-.-+ .....++.-+..+...++-.... ...-..+..++++.|+|.+|+......+.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 11111111 12233444455444444322111 23445678889999999999988776653
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.15 E-value=12 Score=36.36 Aligned_cols=201 Identities=17% Similarity=0.057 Sum_probs=122.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCC-----CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC-----------C------C
Q 006937 57 ILRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----------P------Q 114 (625)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p------~ 114 (625)
.....|-+.+--...-++++.-|. +...++.+...++-.|. ++...+.+.+-.. | .
T Consensus 39 ~~i~kg~~tke~r~I~R~lr~l~~~r~kln~~vL~~~v~~~~~~~s--e~~~~~l~fv~~~~~~~~p~~~~s~~t~~a~~ 116 (493)
T KOG2581|consen 39 AQIDKGVYTKEPRFILRALRLLPSTRRKLNGAVLYKLVSSLLSSGS--EAMDRLLRFVPAFDKNIKPLDTDSPNTQSALK 116 (493)
T ss_pred HHHhccccccchHHHHHHHHhhhhhHhhhhHHHHHHHHHHHcCCch--HHHHHHHhhcccccccCCcccccccccccccc
Confidence 345566555555555566655443 34455555555544443 4444444333210 1 0
Q ss_pred ------cHHHHHHH-H-HHHHHcCCHHHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 006937 115 ------NACAHTHC-G-ILYKDEGRLVEAAESYHKALSA-DP-SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (625)
Q Consensus 115 ------~~~~~~~l-a-~~~~~~g~~~~A~~~~~~al~~-~~-~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (625)
...++..+ + ..+..+.++.+|..+-+..+.. .- +.......-+.+|+.+...+...|+...-...+...+
T Consensus 117 ~k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~l 196 (493)
T KOG2581|consen 117 RKPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALL 196 (493)
T ss_pred cCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 02233322 2 3344568899998887766542 11 1122233346678888888888888766666555544
Q ss_pred hh-----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 185 KI-----DPH-YAPAYYNLGVVYSELMQYDTALGCYEKAAL--E--RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (625)
Q Consensus 185 ~~-----~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (625)
.. +.. .......+-+.|...+.|+.|.....+..- . +...+...+.+|.+..-+++|..|.+++..++..
T Consensus 197 rtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 197 RTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 33 222 244556677889999999999988877641 1 1123566788999999999999999999999999
Q ss_pred CCCcH
Q 006937 255 SPNFE 259 (625)
Q Consensus 255 ~~~~~ 259 (625)
.|.+.
T Consensus 277 apq~~ 281 (493)
T KOG2581|consen 277 APQHA 281 (493)
T ss_pred Ccchh
Confidence 99743
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=92.11 E-value=5 Score=39.94 Aligned_cols=63 Identities=17% Similarity=0.088 Sum_probs=48.0
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHH--HHHhH--HHHHHHhcCHHHHHHHHHHHHhc
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVE--AHIGK--GICLQMQNMGRLAFDSFSEAVKL 111 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 111 (625)
......+..+++.++|..|.++++.+...-|.+.. .+..+ |.-+...-++++|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677899999999999999999999886344333 34444 44456778899999999988765
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.08 E-value=21 Score=39.30 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=64.8
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH-------
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQY--DTALGCYEKAALERPMYAE------- 226 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~------- 226 (625)
+..++..|...|+.++|++.+.+..... +.....+-..-..+...+.- +-..++-.-.++.+|....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6678888999999999999999888733 33333444444444444444 4455555555555543210
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHH
Q 006937 227 ------AYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTD 271 (625)
Q Consensus 227 ------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~ 271 (625)
.-...-.-+......+-++.+++.++..... ....+..+...|..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 0011122245667778888888888877665 33333344444433
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.87 E-value=11 Score=35.40 Aligned_cols=146 Identities=12% Similarity=0.021 Sum_probs=86.6
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH
Q 006937 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (625)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~ 165 (625)
+.+-....+..+..+-++....+++++|+.+.++..++.-- ..-..+|.+.++++++..... ++...
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~-----------yr~sq 254 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI-----------YRQSQ 254 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH-----------HhhHH
Confidence 44445555666777788888899999999988888877532 334667888888887753221 11111
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q 006937 166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLE 242 (625)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~ 242 (625)
.....|...+|. .+.+.+ .......++.|..++|+..+|++.++...+..|-. ..++-++-..+....-|.
T Consensus 255 q~qh~~~~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 255 QCQHQSPQHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred HHhhhccchhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222221 112221 12334568888999999999999999888777732 234445555555555555
Q ss_pred HHHHHHHH
Q 006937 243 SAIACYER 250 (625)
Q Consensus 243 ~A~~~~~~ 250 (625)
+....+-+
T Consensus 329 DvqavLak 336 (556)
T KOG3807|consen 329 DVQAVLAK 336 (556)
T ss_pred HHHHHHHh
Confidence 44444433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.83 E-value=5.3 Score=34.98 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 006937 171 GNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAEAYCNMGVIYKNRGDLESAI 245 (625)
Q Consensus 171 ~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~ 245 (625)
-.-++|...|.++-.. .-++++..+.+|..|. ..+.++++.++.++++..+. +++++..|+.++..+|+++.|-
T Consensus 120 ~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 120 FGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3456777777665433 2246888888888777 67889999999999987543 5899999999999999998874
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.27 Score=26.85 Aligned_cols=23 Identities=17% Similarity=-0.045 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYE 426 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~ 426 (625)
+...+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555555555555555555543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.50 E-value=12 Score=35.14 Aligned_cols=59 Identities=12% Similarity=-0.138 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (625)
-.+.-+...+..+..+-++....+++++|+-+.++..++.-- ..-..+|.+.++++++.
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 344555667788888889999999999999999998887643 33466788888888764
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.50 E-value=1.1 Score=41.72 Aligned_cols=65 Identities=14% Similarity=0.017 Sum_probs=59.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (625)
....+..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|+++-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34566778999999999999999999999999999999999999999999999999999987664
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.34 E-value=15 Score=35.78 Aligned_cols=141 Identities=12% Similarity=0.035 Sum_probs=99.4
Q ss_pred chHhHHH--HHHHHHhCCCHHHHHHHHHHHHHcC----CC-----CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC---
Q 006937 47 EGKDALS--YANILRSRNKFVDALALYEIVLEKD----SG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--- 112 (625)
Q Consensus 47 ~~~~~~~--~a~~~~~~g~~~~A~~~~~~~l~~~----p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 112 (625)
+.+.++. ....+..+++|++|.++-+..+..- -. .+..|+.+..++...|+...-...+...+...
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 3455444 3445566799999999888776531 11 23567788888888888777666666555431
Q ss_pred --C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 006937 113 --P-QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (625)
Q Consensus 113 --p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (625)
. ........+-+.|...+.|++|.....+.. .|+.... ...++.++.+|.+..-+++|..|.+++-+++...|.
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~sn-ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASN-NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--Ccccccc-HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 1 123455666788888999999988887764 2332222 245777889999999999999999999999999997
Q ss_pred C
Q 006937 190 Y 190 (625)
Q Consensus 190 ~ 190 (625)
+
T Consensus 280 ~ 280 (493)
T KOG2581|consen 280 H 280 (493)
T ss_pred h
Confidence 4
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=91.27 E-value=1.9 Score=30.99 Aligned_cols=61 Identities=18% Similarity=0.088 Sum_probs=47.1
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhc
Q 006937 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC---GILYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~ 145 (625)
....|.-++..++.++|+..++++++..++.+.-+..+ ..+|...|++.+.+.+..+-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667889999999999999999988776655544 46788899999988876655443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.25 E-value=18 Score=36.48 Aligned_cols=202 Identities=13% Similarity=0.047 Sum_probs=121.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHH
Q 006937 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 192 (625)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 192 (625)
|-+...+..+-.++...-.+.-....+.+.+....+ ..+ +..++.+|... ..++-...+++..+.+-++..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-kma-------l~el~q~y~en-~n~~l~~lWer~ve~dfnDvv 133 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-KMA-------LLELLQCYKEN-GNEQLYSLWERLVEYDFNDVV 133 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcch-HHH-------HHHHHHHHHhc-CchhhHHHHHHHHHhcchhHH
Confidence 334444555555555555566666777777776544 333 66777777776 667778888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 006937 193 AYYNLGVVYSELMQYDTALGCYEKAALER-PM--Y---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (625)
Q Consensus 193 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~--~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (625)
.-..|+..|.+ ++.+.+..+|.+++... |. + .++|..+-. .--.+.+.-+....+.-...... ...
T Consensus 134 ~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~-----~~~ 205 (711)
T COG1747 134 IGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEG-----RGS 205 (711)
T ss_pred HHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccc-----hHH
Confidence 77888887777 88889999999887542 21 1 122222211 11223333333333322221111 112
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHH
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE--------------------MLKFDMAIVFYELA 326 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~a 326 (625)
.++..+-..|....++.+|++.+...++.+..+..+.-.+...+.. -.++-+++.-|++.
T Consensus 206 Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~ 285 (711)
T COG1747 206 VLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKL 285 (711)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHH
Confidence 2233344556667899999999999998888877766665555444 34566666666666
Q ss_pred HhhCC
Q 006937 327 FHFNP 331 (625)
Q Consensus 327 l~~~~ 331 (625)
+..+.
T Consensus 286 m~f~e 290 (711)
T COG1747 286 MHFDE 290 (711)
T ss_pred heecc
Confidence 65543
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=91.14 E-value=2.1 Score=32.57 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
+..++|.++...|++++|+..+++++++
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444444555555555555555555444
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.86 E-value=2 Score=39.42 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=30.0
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 006937 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
.+...++++.|..+.++.+.++|+++.-+...|.+|.++|.+.-|++.++..++..|+.+.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3444444555555555555555555444444555555555555555555554444444443
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=90.60 E-value=14 Score=33.99 Aligned_cols=63 Identities=10% Similarity=0.169 Sum_probs=43.5
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CHHHHHhHHHHHH-HhcCHHHHHHHHHHHHhc
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKL 111 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 111 (625)
+.++.+|..+.+.|+|++.+.++++++..+|. +.+-...++.+|- ..|....+...+......
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 45788999999999999999999999998775 3455555555553 335555566555554443
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.95 Score=27.08 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=10.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALAL 70 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~ 70 (625)
.++.+|-.+..+|+|++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.43 Score=26.04 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIE 392 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~ 392 (625)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.33 E-value=4.5 Score=35.40 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHH
Q 006937 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----YAEAYNNLGVLYRDAGSISLAI 422 (625)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 422 (625)
+++..+.+|..|. ..+.++|+..+-+++++.+. +++++..|+.++..+|+++.|.
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3555555555444 34555566666666555322 2556666666666666666553
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.17 E-value=17 Score=39.96 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHH-----HHhHHHHHHHhcCHHHHHHHHHHHH
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEA-----HIGKGICLQMQNMGRLAFDSFSEAV 109 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~la~~~~~~g~~~~A~~~~~~al 109 (625)
+-..-..++...+|++|+.+.+-....+|..... ....|.-++.+|++++|+..|.+..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 5566777888888999999887766555543221 1112666889999999999998753
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.82 E-value=58 Score=41.49 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (625)
++.+...|..+.+.|+.++|-+.|..|++++...+.+|...|...
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~ 2856 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYL 2856 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445666777777777777777777777777766666666666543
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.36 E-value=34 Score=36.78 Aligned_cols=378 Identities=13% Similarity=0.013 Sum_probs=207.0
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHH---HhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQ---MQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
....+.+...+...|++++-...-.++.+..|..+..|.....-.. ..++..++...|++++.-. +++..|...+.
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw~e~~~ 191 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIWEEVVN 191 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHHHHHHH
Confidence 3455667778888999888887777777888888887776554433 3367788889999998643 34444444443
Q ss_pred H-------HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH----
Q 006937 125 L-------YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA---- 193 (625)
Q Consensus 125 ~-------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---- 193 (625)
. +...++++.-...|.+++..-.....--..+...+...-..+...-..++-+.++...+... .+..+
T Consensus 192 y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~ 270 (881)
T KOG0128|consen 192 YLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWD 270 (881)
T ss_pred HHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHH
Confidence 3 34557788889999999876443332222233445555555655555677777777776654 22111
Q ss_pred HHHHH---HHHHHcCCHHHHHHHHH-------HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHh
Q 006937 194 YYNLG---VVYSELMQYDTALGCYE-------KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (625)
Q Consensus 194 ~~~la---~~~~~~~~~~~A~~~~~-------~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 263 (625)
+.... .......+++.|..-+. +.++..+.....|..+.......|+.-.-...+++++...+.+...|.
T Consensus 271 ~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi 350 (881)
T KOG0128|consen 271 LSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWI 350 (881)
T ss_pred HHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHh
Confidence 11111 11123344555554433 333444444455666666677778877777777777776666655554
Q ss_pred hHHHHHHH---hchh----hh-hcCCHHHHHHHHHHHH---hhCCCC-----------HHH---HHHHHHHH-HhcC---
Q 006937 264 NMAIALTD---LGTK----VK-LEGDINQGVAYYKKAL---YYNWHY-----------ADA---MYNLGVAY-GEML--- 314 (625)
Q Consensus 264 ~~~~~~~~---l~~~----~~-~~~~~~~A~~~~~~~l---~~~~~~-----------~~~---~~~la~~~-~~~~--- 314 (625)
..+..+-. ++.. +. ..+...-...++++++ +.+... ... +++....+ ...+
T Consensus 351 ~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~ 430 (881)
T KOG0128|consen 351 GYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNII 430 (881)
T ss_pred hhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44332210 0000 00 0000011111111111 111100 000 11111111 1111
Q ss_pred ----------CHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHc
Q 006937 315 ----------KFDMAIVFYELAFHF-NPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQ 381 (625)
Q Consensus 315 ----------~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~ 381 (625)
.+..|...|...... -......+...|.++.. +++.+.+.......+........ .|.....+-...
T Consensus 431 ~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~ 510 (881)
T KOG0128|consen 431 DSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREY 510 (881)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHh
Confidence 233444444433333 11224445555655543 56888888888887776655555 788888888888
Q ss_pred CCHHHHHHHHHHHHHh--CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 382 GKMDAAAEMIEKAIAA--NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 382 g~~~~A~~~~~~al~~--~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
|+...+..++++++.. +|++ ..++..+-......|.++.....-.+
T Consensus 511 g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 511 GDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred CCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 9999999988888765 3332 34555555556666777666554443
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.65 Score=28.13 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
+++..||.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35566677777777777777777777664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.85 Score=27.63 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
+++..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35666777777777777777777777664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=89.14 E-value=19 Score=33.61 Aligned_cols=27 Identities=7% Similarity=-0.181 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006937 298 HYADAMYNLGVAYGEMLKFDMAIVFYE 324 (625)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (625)
.+++.+..+|..+.+.|++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 367788888888888888888877663
|
; PDB: 3LKU_E 2WPV_G. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=88.95 E-value=19 Score=33.35 Aligned_cols=28 Identities=0% Similarity=0.105 Sum_probs=21.1
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 159 VLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
+-+.+..+++..|+..+|+..+++-+..
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~ 39 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDR 39 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3556677788888899998888776654
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=88.83 E-value=23 Score=35.85 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=15.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Q 006937 409 GVLYRDAGSISLAIDAYEQCLKIDP 433 (625)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~~~p 433 (625)
|.-|.+.|+...|..+|.+++....
T Consensus 377 g~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 377 GHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 4556666666666666666666544
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=88.80 E-value=1.6 Score=36.04 Aligned_cols=52 Identities=19% Similarity=0.111 Sum_probs=41.9
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG 98 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 98 (625)
..+.++..|+..+..|+|.-|..+.+.++..+|++..+...++.++..+|.-
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 5677888899999999999999999999999999999888888888777643
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=88.62 E-value=20 Score=36.39 Aligned_cols=54 Identities=17% Similarity=-0.059 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 006937 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (625)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (625)
....+|..++..++|+-|...|+.+.+-..+ ..++..++-++...|.+....+.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~-Dkaw~~~A~~~Em~alsl~~~~~ 263 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN-DKAWKYLAGAQEMAALSLLMQGQ 263 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh-chhHHHHHhHHHHHHHHHHhcCC
Confidence 4567899999999999999999988775443 45566666667666666666553
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.54 E-value=39 Score=36.32 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=22.4
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEI 73 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 73 (625)
.+..........+++.|.+++|.++.+.
T Consensus 109 ~~~~p~Wa~Iyy~LR~G~~~~A~~~~~~ 136 (613)
T PF04097_consen 109 VNGDPIWALIYYCLRCGDYDEALEVANE 136 (613)
T ss_dssp ETTEEHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CCCCccHHHHHHHHhcCCHHHHHHHHHH
Confidence 3566678889999999999999999843
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.01 E-value=52 Score=37.15 Aligned_cols=22 Identities=9% Similarity=-0.080 Sum_probs=10.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 006937 339 NLGVIYKDRDNLDKAVECYQMA 360 (625)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~a 360 (625)
.|+.-+..++++-+|-+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHH
Confidence 3444444455555554444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.85 E-value=53 Score=37.08 Aligned_cols=110 Identities=17% Similarity=0.096 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH---HHHHHHH
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL---NNLGVVY 378 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~la~~~ 378 (625)
.+...|..+...+.+++|.-.|+.+=++ -.--.+|...|++.+|+....+. .+...+.. ..|+.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSLAAQL---SEGKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHHHHH
Confidence 4444555556666666665555443110 00112223335555555444332 23322332 6677778
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (625)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (625)
..++++-+|-+.+...+. +|..+ -.+|.+...+++|+.....+-
T Consensus 1010 ~e~~kh~eAa~il~e~~s-d~~~a------v~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLS-DPEEA------VALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHcccchhHHHHHHHHhc-CHHHH------HHHHhhHhHHHHHHHHHHhcc
Confidence 888888888888777654 22212 223444456677766555443
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=87.83 E-value=9.9 Score=34.89 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 195 YNLGVVYSELMQYDTALGCYEKAALERPM 223 (625)
Q Consensus 195 ~~la~~~~~~~~~~~A~~~~~~al~~~~~ 223 (625)
..+|.+..+.|+|++.+.++++++..++.
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 44555555555566666555555555443
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.25 E-value=46 Score=35.81 Aligned_cols=158 Identities=18% Similarity=0.073 Sum_probs=61.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 006937 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (625)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~ 167 (625)
.-.++...|+|+.|++++-+ .+.+..--..+|.++...|-+.-.-..-...+...+.++.. ..++.+...... .
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~-~ 337 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTR-S 337 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHH-T
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHH-H
Confidence 44567778999999998876 22222212233334444443333322225555555554332 344444444444 4
Q ss_pred HHhCChHHHHHHHHHHHhhC-CCCH-HHHHHHHHHHHHcCCHHHHH--------------HHHHHHHHhCCCC---HHHH
Q 006937 168 KLAGNTQDGIQKYYEALKID-PHYA-PAYYNLGVVYSELMQYDTAL--------------GCYEKAALERPMY---AEAY 228 (625)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~-~~~~-~~~~~la~~~~~~~~~~~A~--------------~~~~~al~~~~~~---~~~~ 228 (625)
+...+..+|+++|--+-... |... ..+..+..+....++++.-+ +-..+.+...... -.+.
T Consensus 338 F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~ 417 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREII 417 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHH
Confidence 45678888888775443322 2211 12233333334443332221 1111122222211 2344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 006937 229 CNMGVIYKNRGDLESAIACYERC 251 (625)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~a 251 (625)
...|.-....|++++|+.+|.-+
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 45566666777777777776543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=87.14 E-value=16 Score=30.25 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=25.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (625)
Q Consensus 202 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (625)
...+.....+.+++.++..++.++..+..+..+|.+. +..+.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3445566666666666666555556666666666543 2333444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.85 E-value=3.1 Score=38.40 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (625)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (625)
+...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.|...|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456667777888888888888888888777888888888888888777777776654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.69 E-value=3.1 Score=38.39 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=48.3
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (625)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (625)
.+...+..|...|.+.+|+++.++++.++|-+...+..+-.++...|+--.+...|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445567778888888888888888888888888888888888888887777777776543
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=86.03 E-value=2.6 Score=40.00 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 006937 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (625)
Q Consensus 319 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (625)
|+.+|.+|..+.|++...++.+|.++...|+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888887665567777888777776
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=85.76 E-value=3.3 Score=39.33 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 346 (625)
|..+|.+|..+.|.....++.+|.++...|+.-.|+-+|-+++......+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997766668888888888777
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=85.68 E-value=21 Score=33.13 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQMA 360 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (625)
....+|..|+..|++++|+++|+.+...... ...++..+..++...|+.+..+.+.-+.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445666666666666666666666443221 1345556666666677766666554443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.21 E-value=22 Score=38.27 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=31.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 199 VVYSELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (625)
.++.+..-|+-|+.+.+.-- .++ ....+....|..++..|++++|...|-+.+..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34455555666665544321 111 12345666677777777777777777777654
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=85.18 E-value=36 Score=32.47 Aligned_cols=159 Identities=11% Similarity=0.065 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--------------------------HHHHHHHHHHHHhhCC-C
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--------------------------FDMAIVFYELAFHFNP-H 332 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--------------------------~~~A~~~~~~al~~~~-~ 332 (625)
+--++|+.+-+-...+.|..++++-.++.+.++..+ .+++...+.+++.... .
T Consensus 210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pG 289 (415)
T COG4941 210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPG 289 (415)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 345788888888888999999988887777654321 4567777777776543 3
Q ss_pred CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH
Q 006937 333 CAEACNNLGVIYKD-----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAY 405 (625)
Q Consensus 333 ~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 405 (625)
-....-.++.++.. .-++..-..+|.-...+.|+ +.+-.|.+.+..+..-.+.++...+..... -..+.-.+
T Consensus 290 PYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h 368 (415)
T COG4941 290 PYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYH 368 (415)
T ss_pred hHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccH
Confidence 22333333333332 23555555666665555554 455566666666666677777777666554 22334566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
...|.++.++|+.++|...|++++.+.++..+..
T Consensus 369 ~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 369 AARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 7789999999999999999999999998866543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.31 E-value=7.7 Score=34.29 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=51.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH
Q 006937 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (625)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (625)
...+++.+...+|+...+.-++.+|.+......+-..+.-.|+|++|...++-+-.+.|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 45677888888888888888888888888888888888888888888888888888888653
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.72 E-value=2.6 Score=26.55 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 006937 52 LSYANILRSRNKFVDALALYEIVLE 76 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (625)
+.+|..|...|+++.|..++++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677777777777777777777774
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.59 E-value=19 Score=37.14 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=76.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006937 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388 (625)
Q Consensus 309 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 388 (625)
+..+.|+++.|.++..++ ++..-|..||.+....+++..|.++|.++.... .|-.++...|+-+--.
T Consensus 646 lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLG--------SLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchh--------hhhhhhhhcCChhHHH
Confidence 446778888887765554 556778889999999999999999988876542 2222233334433222
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHHHHHHHHH
Q 006937 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 468 (625)
Q Consensus 389 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (625)
..-..+-+....+ .--.+|...|+++++++.+...-++ |+ ..+++..|+. .+.-+....|...+
T Consensus 713 ~la~~~~~~g~~N-----~AF~~~~l~g~~~~C~~lLi~t~r~-pe------Aal~ArtYlp----s~vs~iv~~wk~~l 776 (794)
T KOG0276|consen 713 VLASLAKKQGKNN-----LAFLAYFLSGDYEECLELLISTQRL-PE------AALFARTYLP----SQVSRIVELWKEDL 776 (794)
T ss_pred HHHHHHHhhcccc-----hHHHHHHHcCCHHHHHHHHHhcCcC-cH------HHHHHhhhCh----HHHHHHHHHHHHHh
Confidence 2222221111111 1124677889999888877654322 22 2245666654 34445566677665
Q ss_pred hh
Q 006937 469 MR 470 (625)
Q Consensus 469 ~~ 470 (625)
..
T Consensus 777 ~k 778 (794)
T KOG0276|consen 777 SK 778 (794)
T ss_pred hh
Confidence 43
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.54 E-value=3.1 Score=26.25 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=13.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQCL 429 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al 429 (625)
+.||..|..+|+.+.|.+.++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555555
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=83.42 E-value=44 Score=33.32 Aligned_cols=64 Identities=17% Similarity=-0.000 Sum_probs=40.6
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 006937 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA--PAYYNL--GVVYSELMQYDTALGCYEKAALE 220 (625)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~l--a~~~~~~~~~~~A~~~~~~al~~ 220 (625)
+......+...+..++|..|.+.+..+...-|... ..+..+ |..++..-++++|.+.+++.+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445566667778888888888888777523322 233333 34445677778888888877654
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=83.22 E-value=14 Score=36.66 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (625)
...++.+|-+|+.+++|.+|++.|...+-
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777666653
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.60 E-value=29 Score=35.85 Aligned_cols=153 Identities=18% Similarity=0.068 Sum_probs=84.5
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006937 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (625)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (625)
.+.-.|+++.|...+-.+ | .+.....+..+..+|..++|++ +.++.. ..-.+..+.|+++.|.
T Consensus 595 t~vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL~-------~s~D~d----~rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQALE-------LSTDPD----QRFELALKLGRLDIAF 657 (794)
T ss_pred HHhhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhhh-------cCCChh----hhhhhhhhcCcHHHHH
Confidence 556677777777654433 2 2344455666666776665543 333321 1223456778888887
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (625)
Q Consensus 137 ~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 216 (625)
++..++- +..- |..||......+++..|.+++.++... -.|-.++...|+-+--...-..
T Consensus 658 ~la~e~~-----s~~K-------w~~Lg~~al~~~~l~lA~EC~~~a~d~--------~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 658 DLAVEAN-----SEVK-------WRQLGDAALSAGELPLASECFLRARDL--------GSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred HHHHhhc-----chHH-------HHHHHHHHhhcccchhHHHHHHhhcch--------hhhhhhhhhcCChhHHHHHHHH
Confidence 7665542 2222 677788888888888888888876543 2223334444444433333333
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (625)
Q Consensus 217 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (625)
+-+....+.. -.++...|+++++++.+.+.
T Consensus 718 ~~~~g~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhcccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 3222222211 13456677777777776654
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.91 E-value=2.6 Score=40.05 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
...+++.+-++.+.+..|+.....++..++....+++..+..+....++++|++.++.+....|++.....
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~ 347 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEE 347 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHH
Confidence 44446666666666666666666666666666666666666666666677777777776666666655443
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=81.81 E-value=51 Score=32.92 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-------h-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAF-------H-FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al-------~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (625)
+...+.+++..+|+|..|++.++..- . ..+-....++.+|-+|+.+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888888877765431 1 1223456778889999999999999998888764
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=81.68 E-value=3.7 Score=23.31 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHhHH
Q 006937 63 KFVDALALYEIVLEKDSGNVEAHIGKG 89 (625)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la 89 (625)
+.+.|..+|++++...|.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555554443
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown | Back alignment and domain information |
|---|
Probab=81.30 E-value=4.3 Score=42.47 Aligned_cols=96 Identities=13% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH--hhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH--HccCC-CCHHHHHHH
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAF--HFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMA--LSIKP-NFSQSLNNL 374 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al--~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a--l~~~~-~~~~~~~~l 374 (625)
.....-+..+...|++..|...+.+.- .+.+. ........|.+....|++++|+..+... ..+.+ .....+...
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~ 104 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLR 104 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHH
Confidence 345555677777788888887777665 22222 2445566677777888888888877641 11111 123355667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 006937 375 GVVYTVQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 375 a~~~~~~g~~~~A~~~~~~al~ 396 (625)
+.++...|++-+|...+-..-.
T Consensus 105 A~a~~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 105 AQAYEQQGDPLAAARERIALDP 126 (536)
T ss_dssp ----------------------
T ss_pred HHHHHhcCCHHHHHHHHHHHhh
Confidence 7778888877777765554433
|
; PDB: 3CKM_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.46 E-value=92 Score=33.84 Aligned_cols=63 Identities=24% Similarity=0.178 Sum_probs=46.7
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-HHHHHhHHHHHHHhcCHHHHHHHHHHHHhc
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (625)
...+-..-.++.++.-|+-|+.+.+.- ..+++. .+.+...|.-++..|++++|...|-+.+..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 344555677788888899998886653 233332 357778899999999999999999888764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 625 | ||||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 1e-32 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 2e-14 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 2e-25 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 9e-19 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-18 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-11 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-16 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 3e-13 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 7e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 1e-14 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 1e-10 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 6e-13 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 7e-10 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 3e-11 | ||
| 2vsn_A | 568 | Structure And Topological Arrangement Of An O-Glcna | 1e-10 | ||
| 2vsy_A | 568 | Xanthomonas Campestris Putative Ogt (Xcc0866), Apos | 1e-10 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 5e-10 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 2e-04 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-08 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 3e-08 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 1e-06 | ||
| 4eqf_A | 365 | Trip8b-1a#206-567 Interacting With The Carboxy-Term | 3e-08 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 7e-08 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 1e-06 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 7e-08 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 1e-06 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 8e-08 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 1e-06 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 9e-08 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 1e-06 | ||
| 3cv0_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (Pts1) | 2e-06 | ||
| 3cvq_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (pts1) | 2e-06 | ||
| 2q7f_A | 243 | Crystal Structure Of Yrrb: A Tpr Protein With An Un | 3e-05 | ||
| 2q7f_A | 243 | Crystal Structure Of Yrrb: A Tpr Protein With An Un | 3e-04 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 5e-05 | ||
| 2xpi_A | 597 | Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1 | 8e-05 | ||
| 3lca_A | 533 | Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term | 3e-04 | ||
| 3fp2_A | 537 | Crystal Structure Of Tom71 Complexed With Hsp82 C-T | 3e-04 |
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac Transferase Homolog: Insight Into Molecular Control Of Intracellular Glycosylation Length = 568 | Back alignment and structure |
|
| >pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Apostructure Length = 568 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal Seven Residues Of Hcn2 Length = 365 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide Length = 327 | Back alignment and structure |
|
| >pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed To Pts1 Peptide (7- Skl) Length = 327 | Back alignment and structure |
|
| >pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243 | Back alignment and structure |
|
| >pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1 Length = 597 | Back alignment and structure |
|
| >pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533 | Back alignment and structure |
|
| >pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 387 bits (997), Expect = e-130
Identities = 102/388 (26%), Positives = 175/388 (45%), Gaps = 14/388 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A+ F A + ++ N + + + A+K +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A A+++ G +YK+ G+L EA E Y AL P + LA L G + +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG-------DME 118
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+Q Y AL+ +P +LG + L + + A CY KA +P +A A+ N+G +
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
+ +G++ AI +E+ + + PNF A N+ L + ++ VA Y +AL
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR-------IFDRAVAAYLRALS 231
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
+ ++A NL Y E D+AI Y A PH +A NL K++ ++ +A
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+CY AL + P + SLNNL + QG ++ A + KA+ P +A A++NL + +
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNR 442
G + A+ Y++ ++I P +A N
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNM 379
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 306 bits (787), Expect = 4e-99
Identities = 94/362 (25%), Positives = 171/362 (47%), Gaps = 14/362 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
++I + + + ++++ EA+ G + + + A + + A++L P
Sbjct: 40 SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ + G + A ++Y AL +P V +DLG LK G +
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-------YCVRSDLGNLLKALGRLE 152
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ Y +A++ P++A A+ NLG V++ + A+ +EKA P + +AY N+G +
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
K + A+A Y R L++SPN + N+A + G I+ + Y++A+
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG-------LIDLAIDTYRRAIE 265
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
H+ DA NL A E A Y A P A++ NNL I +++ N+++AV
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
Y+ AL + P F+ + +NL V QGK+ A ++AI +PT+A+AY+N+G ++
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Query: 415 AG 416
Sbjct: 386 MQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 262 bits (672), Expect = 5e-82
Identities = 75/281 (26%), Positives = 126/281 (44%), Gaps = 7/281 (2%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+L AG+ + + + + +P L ++ + + D + A +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
P+ AEAY N+G +YK RG L+ AI Y L + P+F N+A AL GD
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA-------GD 116
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+ V Y AL YN +LG + + + A Y A P+ A A +NLG
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176
Query: 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
++ + + A+ ++ A+++ PNF + NLG V D A +A++ +P +
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
A + NL +Y + G I LAID Y + +++ P +A N
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 7e-70
Identities = 74/295 (25%), Positives = 126/295 (42%), Gaps = 14/295 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A L + A+ Y L+ + G L+ A + +A++ P
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A A ++ G ++ +G + A + KA++ DP++ +LG LK A
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------LDAYINLGNVLKEARIFD 220
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ Y AL + P++A + NL VY E D A+ Y +A +P + +AYCN+
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
K +G + A CY L + P + NN+A + G +I + V Y+KAL
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG-------NIEEAVRLYRKALE 333
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349
+A A NL + K A++ Y+ A +P A+A +N+G K+ +
Sbjct: 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 8e-66
Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 7/249 (2%)
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
L + ++ A + + P + I+ L+ + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313
+P A +N+ + G + + + +Y+ AL + D NL A
Sbjct: 62 QNPLLAEAYSNLGNVYKER-------GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114
Query: 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373
+ A+ Y A +NP ++LG + K L++A CY A+ +PNF+ + +N
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
LG V+ QG++ A EKA+ +P + +AY NLG + ++A A+ AY + L + P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 434 DSRNAGQNR 442
+ N
Sbjct: 235 NHAVVHGNL 243
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 273 bits (699), Expect = 1e-83
Identities = 63/403 (15%), Positives = 133/403 (33%), Gaps = 24/403 (5%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD---SFSEAVK 110
+ + + F A Y+ L D+ EA + ++S K
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
D + + + AE Y +++ + +L +L +
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS-------SDLLLCKADTLFVR 318
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
D + + L+IDP+ Y E + + P A +
Sbjct: 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA 378
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
+G+ Y + A + + + P F A A + G + +Q ++ Y
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG-------EHDQAISAYT 431
Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
A LG+ + ++ +A + + ++ + N LGV+ ++ ++
Sbjct: 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491
Query: 351 DKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
A+ +Q AL + + ++ + NLG Y DAA + + + + + A
Sbjct: 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
+ + ++Y LAI + L I P+ A A+
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 5e-74
Identities = 63/402 (15%), Positives = 120/402 (29%), Gaps = 27/402 (6%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
+ L N R K + L + + ++ ++ +G + A + +
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEA---SMCYLRGQVYTNLSNFDRAKECYK 224
Query: 107 EAVKLDPQNACAHTHCG---ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
EA+ +D + A +L DE + +Y D ++ + L L
Sbjct: 225 EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS-------LYML 277
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223
+ + + Y ++ + ++ L K P
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283
+ Y G+ + P + + I + I+
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN-------KIS 390
Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343
+ Y+ K+ + + A ++ + D AI Y A LG+
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------ 397
+ N+ A E Q + ++ LN LGVV + M A + A+
Sbjct: 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510
Query: 398 -NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
+A + NLG YR AIDA Q L + + N
Sbjct: 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 3e-72
Identities = 53/377 (14%), Positives = 117/377 (31%), Gaps = 22/377 (5%)
Query: 46 FEGKDALSYANILRSRNKFVDALAL-YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
+E D L ++L + ++ L L Y ++D+ + + + +
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293
Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+ ++ +++ R ++ K L DP L + G
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353
Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
+ + P A + +G+ Y + + A + K++ P +
Sbjct: 354 -------EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A+ + G+ + AI+ Y + + + + LG +I
Sbjct: 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG-------NILL 459
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA-------FHFNPHCAEAC 337
Y + + + + LGV AI ++ A A
Sbjct: 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
NLG Y+ D A++ L + N + + +VY + A + +++A
Sbjct: 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579
Query: 398 NPTYAEAYNNLGVLYRD 414
+P A + L +
Sbjct: 580 SPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 227 bits (579), Expect = 3e-66
Identities = 65/405 (16%), Positives = 119/405 (29%), Gaps = 18/405 (4%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
A N+ L L K A G + + A +
Sbjct: 136 AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ + A G +Y + A E Y +AL D A + L L A
Sbjct: 196 IKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV------SNHLLTA 248
Query: 171 GNTQDGIQK--YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
D + K Y K D + + Y L + + Y + ++
Sbjct: 249 DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
R +A + L + P +L + G K KL
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL-------YLI 361
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
+ + A +G+ Y + K A ++ + +P A +
Sbjct: 362 SNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421
Query: 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
D+A+ Y A + LG+ + G + A E ++ + A N L
Sbjct: 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL 481
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
GV+ + + AI+ ++ L + +++ + + N GH
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT--WANLGH 524
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-27
Identities = 45/267 (16%), Positives = 76/267 (28%), Gaps = 16/267 (5%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE------ 259
QY A EK +A+ + +Y GD A + + +
Sbjct: 99 QYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157
Query: 260 ---IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316
+ + AL LG D + A Y G Y + F
Sbjct: 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNF 216
Query: 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE---CYQMALSIKPNFSQSLNN 373
D A Y+ A + C EA + L + + + + Y F +SL
Sbjct: 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276
Query: 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
L + T AE +I ++ + + L+IDP
Sbjct: 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336
Query: 434 DSRNAGQNRLLAMNYINEGHDDKLFEA 460
+ + L + G +KL+
Sbjct: 337 YNLDVYPLHLAS--LHESGEKNKLYLI 361
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 270 bits (692), Expect = 6e-83
Identities = 67/348 (19%), Positives = 114/348 (32%), Gaps = 9/348 (2%)
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
+ D + + + A+ + A L A M + + +P EA
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
LG + + +A Q A P LG G+ +AAA +A
Sbjct: 61 ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457
P L R D ++ ++ + +
Sbjct: 121 LPEEPYITAQLLNWRRRLCDWRAL-DVLSAQVRAAVAQGVGAVEPFAFLSE--DASAAEQ 177
Query: 458 FEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQN 517
R + S + PL +G+VS + H A +
Sbjct: 178 LACARTRAQAIAA--SVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQ 235
Query: 518 YKVVVYS-AVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGH 576
+ ++ A D T+R R + + D+ + A +R ID+L +L G
Sbjct: 236 PDLQMHLFATSGDDGSTLRTR---LAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGW 292
Query: 577 TANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQ 624
+ + A +PAPVQV W+ YP T+G P +DY + D+ A PP +
Sbjct: 293 GGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEP 340
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 8e-31
Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 7/150 (4%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
A+ P + L + G+T G L + P
Sbjct: 3 ADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG 55
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ A LG V ++ A ++A+ P + +G ++ G E+A A Y
Sbjct: 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
R + P + L L+
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRLCDWRALD 145
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 2e-28
Identities = 23/201 (11%), Positives = 50/201 (24%), Gaps = 7/201 (3%)
Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
+ + + + A++ P A+ L + ++ P + EA
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
+G + + A ++ +P + AL D G A
Sbjct: 61 ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA-------GQAEAAAAA 113
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
Y +A L + + V A + +D
Sbjct: 114 YTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDAS 173
Query: 349 NLDKAVECYQMALSIKPNFSQ 369
++ A +I +
Sbjct: 174 AAEQLACARTRAQAIAASVRP 194
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-26
Identities = 21/156 (13%), Positives = 37/156 (23%), Gaps = 9/156 (5%)
Query: 98 GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
AV+ PQ+ A G + + L+ P + A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
L V + +A P + LG + Q + A Y
Sbjct: 63 LGRVRWTQQ-------RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251
+A P + + D + +
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 8e-20
Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 7/145 (4%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
L + + A + + + L P + A G +
Sbjct: 7 RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
+ R EAA +A A P + + LG +L+ AG + Y A +
Sbjct: 67 RWTQQRHAEAAVLLQQASDAAPEH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTA 210
+ P L L +
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRAL 144
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 1e-15
Identities = 20/111 (18%), Positives = 30/111 (27%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
A+ + L G+ EA G Q A +A P
Sbjct: 29 LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
++ G +D G+ AA +Y +A P L L
Sbjct: 89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 10/99 (10%), Positives = 28/99 (28%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
+ ++ + +A L + + + + G L+ A +++ A +L P
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152
+ + + +A A
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 264 bits (677), Expect = 2e-81
Identities = 41/400 (10%), Positives = 102/400 (25%), Gaps = 17/400 (4%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ ++ A+ ++ L + V A Q +
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L P+ A + + +A P + + G
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ-------VVAIASNGG 182
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + G L L +A P
Sbjct: 183 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 242
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285
A + G + ++ + + ++P +A + + L + +
Sbjct: 243 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE-------TVQRL 295
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
+ +A A+ + G + + A P A + +
Sbjct: 296 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 355
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
+ + + + A + P ++ + G + ++ +A P A
Sbjct: 356 ALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAI 415
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ + ++ + Q + P A +
Sbjct: 416 ASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 455
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 256 bits (655), Expect = 3e-78
Identities = 41/384 (10%), Positives = 95/384 (24%), Gaps = 14/384 (3%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S+ ++ L + V A Q + +A L
Sbjct: 111 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P+ A G + + +A P + + G +
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ-------VVAIASNGGGKQALET 223
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q + +A + P A + G L L +A P A +
Sbjct: 224 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNS 283
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ ++ + + ++P +A + L + + + +A
Sbjct: 284 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE-------TVQRLLPVLCQA 336
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A+ + + + A P A + G + + + +
Sbjct: 337 HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQR 396
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ A + P ++ + + ++ +A P A + G
Sbjct: 397 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGR 456
Query: 413 RDAGSISLAIDAYEQCLKIDPDSR 436
SI + + L +
Sbjct: 457 PALESIVAQLSRPDPALAALTNDH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 252 bits (646), Expect = 6e-77
Identities = 45/402 (11%), Positives = 101/402 (25%), Gaps = 21/402 (5%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEK-----DSGNVEAHIGKGICLQMQNMGRLAFD 103
L A R V+A+ + L V A Q +
Sbjct: 36 GQLLKIAK--RGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLP 93
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
+A L PQ A + + +A P + +
Sbjct: 94 VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-------VVAIASH 146
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223
+ Q + +A + P A + G L L +A P
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283
A + G + ++ + + ++P +A + L +
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL-------ETVQ 259
Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343
+ + +A A+ + + + A P A + G
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
+ + + + + A + P ++ + + ++ +A P
Sbjct: 320 KQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 379
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A + G + ++ + Q + P+ A +
Sbjct: 380 AIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 7e-72
Identities = 39/379 (10%), Positives = 99/379 (26%), Gaps = 14/379 (3%)
Query: 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126
A L L+ D+G + +G ++ + + L P+ A
Sbjct: 23 AGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGK 82
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
+ + +A P + + + Q + +A +
Sbjct: 83 QALETVQRLLPVLCQAHGLTPQQ-------VVAIASHDGGKQALETVQRLLPVLCQAHGL 135
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
P A + L L +A P A + G + ++ +
Sbjct: 136 TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
+ ++P +A + L + + + +A A+ +
Sbjct: 196 VLCQAHGLTPQQVVAIASNGGGKQAL-------ETVQRLLPVLCQAHGLTPQQVVAIASN 248
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
G + + A P A + + + + + + A + P
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
++ + G + ++ +A P A + + ++ +
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 368
Query: 427 QCLKIDPDSRNAGQNRLLA 445
Q + P+ A +
Sbjct: 369 QAHGLTPEQVVAIASNGGG 387
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 1e-62
Identities = 36/363 (9%), Positives = 93/363 (25%), Gaps = 14/363 (3%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
H ++ + +A + ++LD G + E
Sbjct: 5 HHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAP 64
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
L+ P + + + Q + +A + P A +
Sbjct: 65 LNLTPEQ-------VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 117
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
L L +A P A + + +++ + + ++P +A
Sbjct: 118 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAI 177
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322
+ L + + + +A A+ + G + +
Sbjct: 178 ASNGGGKQAL-------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 230
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
A P A + G + + + + + A + P ++ +
Sbjct: 231 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ ++ +A P A + G + ++ + Q + P A +
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350
Query: 443 LLA 445
Sbjct: 351 DGG 353
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 2e-59
Identities = 37/332 (11%), Positives = 86/332 (25%), Gaps = 14/332 (4%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
++ H E L A E L D L I T+++
Sbjct: 2 EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQ-----LLKIAKRGGVTAVEAVHAW 56
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
++ + L + P A + L L +A P A +
Sbjct: 57 RNALTG--APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG 114
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ ++ + + ++P +A + L + + +A
Sbjct: 115 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL-------ETVQALLPVLCQAH 167
Query: 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353
A+ + G + + A P A + G + + + +
Sbjct: 168 GLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 227
Query: 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
+ A + P ++ + G + ++ +A P A + +
Sbjct: 228 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQ 287
Query: 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
++ + Q + P A +
Sbjct: 288 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 6e-38
Identities = 32/234 (13%), Positives = 62/234 (26%), Gaps = 16/234 (6%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ ++ A+ ++ L + V A G Q +
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 333
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L PQ A + + +A P + + G
Sbjct: 334 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-------VVAIASNGG 386
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + L L +A P
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQV 446
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
A + G + + ++ + LA N + +AL LG + L+
Sbjct: 447 VAIASNGGGRPALESIVAQLSRPDPALAALTN------DHLVALACLGGRPALD 494
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 2e-76
Identities = 63/326 (19%), Positives = 109/326 (33%), Gaps = 20/326 (6%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+++ + + + Y+ P A + G G+ I
Sbjct: 38 NQEAQNQVTVSASEKGYYFHTENPFKDWPGA-------FEEGLKRLKEGDLPVTILFMEA 90
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
A+ DP A A+ LG+ +E A+ ++ +P +A + V Y N +
Sbjct: 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG---VAYYKKALYYNWHY 299
A + + +P ++ N + K D + Y +A + N
Sbjct: 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210
Query: 300 ADAM--YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
D LGV + +F+ AI + A P N LG + D ++AVE Y
Sbjct: 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA--------YNNLG 409
AL I+P F +S NLG+ G A A++ N+
Sbjct: 271 TRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330
Query: 410 VLYRDAGSISLAIDAYEQCLKIDPDS 435
R A S+ + ++ D D
Sbjct: 331 AALRIALSLMDQPELFQAANLGDLDV 356
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 2e-73
Identities = 58/326 (17%), Positives = 110/326 (33%), Gaps = 20/326 (6%)
Query: 134 EAAESYHKALSADPSYKPA-AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 192
A + + E + + YY + P
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
+ G+ + + E A L+ P AEA+ +G+ + ++AI +RCL
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
+ PN A +A++ T+ K + N Y + N + G
Sbjct: 127 ELQPNNLKALMALAVSYTNTS-------HQQDACEALKNWIKQNPKYKYLVKNKKGSPGL 179
Query: 313 MLKFDMAIVFYEL----------AFHFNPHCAEAC--NNLGVIYKDRDNLDKAVECYQMA 360
+ + V + A H N + LGV++ ++A++ + A
Sbjct: 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
L+++P N LG + + A E +A+ P + + NLG+ + G+
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAM 446
A+ + L + SRN Q A+
Sbjct: 300 AVSNFLTALSLQRKSRNQQQVPHPAI 325
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 4e-58
Identities = 54/321 (16%), Positives = 101/321 (31%), Gaps = 27/321 (8%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
A + E + +D G+ EA GI + A + +
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG---TS 166
+L P N A + Y + +A E+ + +P YK + S
Sbjct: 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186
Query: 167 LKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
+ + + Y EA + LGV++ +++ A+ + A RP
Sbjct: 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
+ +G N E A+ Y R L + P F ++ N+ I+ +L G +
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL-------GAYRE 299
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
V+ + AL + A + + I L+ P +A N
Sbjct: 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA---LSLMDQPELFQAANL----- 351
Query: 345 KDRDNLDKAVECYQMALSIKP 365
++ A ++ P
Sbjct: 352 -------GDLDVLLRAFNLDP 365
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 1e-44
Identities = 41/251 (16%), Positives = 77/251 (30%), Gaps = 27/251 (10%)
Query: 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVI--------YKNRGDLESAIACYERCLAVS 255
M+++ A E + M +N+ + ++ Y
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
+ GD+ + + + A+ + A+A LG+ E
Sbjct: 62 FKDWPGAFEEGLKRLKE-------GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENEN 114
Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
AIV + P+ +A L V Y + + A E + + P + + N
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174
Query: 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEA------------YNNLGVLYRDAGSISLAID 423
+ +M + Y EA LGVL+ +G + AID
Sbjct: 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234
Query: 424 AYEQCLKIDPD 434
A+ L + P+
Sbjct: 235 AFNAALTVRPE 245
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 2e-40
Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 4/218 (1%)
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
+ E A A E + MA + + + ++ Y +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
+ G+ + + I+F E A +P AEA LG+ + +N A+
Sbjct: 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL 122
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417
Q L ++PN ++L L V YT A E ++ I NP Y N
Sbjct: 123 QRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR 182
Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNR---LLAMNYINEG 452
+S + + A + G
Sbjct: 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 250 bits (639), Expect = 6e-74
Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 20/382 (5%)
Query: 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311
P + NN+A + G +I + V Y+KAL +A A NL
Sbjct: 2 PGSCPTHADSLNNLANIKREQG-------NIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 54
Query: 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371
+ K A++ Y+ A +P A+A +N+G K+ ++ A++CY A+ I P F+ +
Sbjct: 55 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 114
Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
+NL ++ G + A A+ P + +AY NL + + + ++ + I
Sbjct: 115 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
Query: 432 DPDSRNAGQN----RLLAMNYINEGHDDKLF---EAHRDWGKRFMRLYSQYTSWDNTKDP 484
D + +M Y K + K + Y + K
Sbjct: 175 VADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS 234
Query: 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS-AVVKADAKTIRFREKVMKK 543
+ L +GYVS D+ H S+ +++ H+ ++V Y+ + ++ +
Sbjct: 235 DGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEA--- 291
Query: 544 GGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNT 602
+ D+ I K A + +D I ILV + G+T + + A +PAP+Q W+GYP T
Sbjct: 292 -NHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGT 350
Query: 603 TGLPTIDYRITDSLADPPETKQ 624
+G +DY ITD P E +
Sbjct: 351 SGALFMDYIITDQETSPAEVAE 372
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 186 bits (472), Expect = 1e-50
Identities = 81/510 (15%), Positives = 145/510 (28%), Gaps = 42/510 (8%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
P +A + + + +++G + EA Y KAL P + A LA VL G
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG------ 57
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
Q+ + Y EA++I P +A AY N+G E+ AL CY +A P +A+A+ N
Sbjct: 58 -KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
+ I+K+ G++ AIA Y L + P+F A N+A L + D K
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV-------CDWTDYDERMK 169
Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
K + + L + + A
Sbjct: 170 KLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKI----------- 217
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
+ S +G V + G + M NP E +
Sbjct: 218 -NVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALS 276
Query: 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMR 470
+ + + N + + I+ + + +R
Sbjct: 277 PDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALR 336
Query: 471 LYSQYTSWDNTKDPERPLVIGYVSPDYFTH---SVSYFIEAPLVYHD-YQNYKVVVYSAV 526
W L + Y+ D T + E + +
Sbjct: 337 PAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFF-----IGDHA 391
Query: 527 VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGM-- 584
+ G I+ + ++ + A + +V++ +
Sbjct: 392 NMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSN 451
Query: 585 ----MACQPAPVQVTWIGYPNTTGLPTIDY 610
M P + G I
Sbjct: 452 TALNMPVIPMNTIAEAVIEMINRGQIQITI 481
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 98.3 bits (244), Expect = 1e-21
Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 8/173 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A++L+ + K +AL Y+ + +A+ G L+ + A ++ A++++P
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A AH++ ++KD G + EA SY AL P + +L L++ +
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-------PDAYCNLAHCLQIVCDWT 162
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
D ++ + + I L V+ + KA ER
Sbjct: 163 DYDERMKKLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCL 214
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 3e-73
Identities = 47/292 (16%), Positives = 88/292 (30%), Gaps = 22/292 (7%)
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
G+ Y Y G+ +L A +E P EA+ +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
+G+ AI + P +A++ T+ + N +A +
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH-------NANAALASLR 113
Query: 291 KALYYNWHYADA---------------MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
L Y + + + ++ A NP+ A+
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ 173
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
+LGV+Y +N D A + A+ ++P+ +Q N LG + A + +A+
Sbjct: 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233
Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
NP Y N+ V Y + LA + + +
Sbjct: 234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT 285
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 2e-61
Identities = 49/322 (15%), Positives = 100/322 (31%), Gaps = 37/322 (11%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
+ + + +A +E V + EA G+ LA + + A
Sbjct: 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR 82
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD------- 162
LDP++ H + + +E A S L + P Y+ D
Sbjct: 83 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142
Query: 163 -LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
++ + AL+++P+ A + +LGV+Y+ YD+A +A R
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
P A+ + +G N + A+ Y R L ++P + NMA++ +++
Sbjct: 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM-------SQ 255
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+ +A+Y + +
Sbjct: 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW----------------------DFFR 293
Query: 342 VIYKDRDNLDKAVECYQMALSI 363
++ + D Y +
Sbjct: 294 MLLNVMNRPDLVELTYAQNVEP 315
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 22/152 (14%), Positives = 44/152 (28%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
Y + E G+ NL +A ++ P ++ +L
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
G+ K A + A +P + L V + + + + A+ + L P
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121
Query: 435 SRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
G L A I++ + +
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 36/232 (15%), Positives = 63/232 (27%), Gaps = 48/232 (20%)
Query: 40 GSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+ + S + N++ + L LE + + + H G+ + N
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYD 189
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
A + AV+L P +A G + R EA ++Y++
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR------------------ 231
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
AL I+P Y YN+ V YS + QYD A +A
Sbjct: 232 -----------------------ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268
Query: 220 ERPMYAEAYCNMGVIYKNR--GDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
+ + R P+ +
Sbjct: 269 MQVGGTTPTGEASREATRSMWDFFRMLLNVMNR-----PDLVELTYAQNVEP 315
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 236 bits (603), Expect = 3e-72
Identities = 64/330 (19%), Positives = 115/330 (34%), Gaps = 33/330 (10%)
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLK-----LAGNTQDGIQKYYEALKIDPH---- 189
+ +A SA S + L L ++ L+ Y + + +
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
P + G+ + A+ +E A + P + EA+ +G AI+
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA------- 302
RCL + P+ + A +A++ T+ Q + L Y YA
Sbjct: 123 RCLELKPDNQTALMALAVSFTNES-------LQRQACEILRDWLRYTPAYAHLVTPAEEG 175
Query: 303 --MYNLGVAYGEM------LKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDK 352
LG + + F + A +P + LGV++ DK
Sbjct: 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
AV+C+ ALS++PN N LG + + A +A+ P Y + NLG+
Sbjct: 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ G+ A++ + + L + SR
Sbjct: 296 INLGAHREAVEHFLEALNMQRKSRGPRGEG 325
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 5e-67
Identities = 53/322 (16%), Positives = 100/322 (31%), Gaps = 24/322 (7%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
+ +Y K + + G G+ + + + A++ DP + A
Sbjct: 44 LTSATYDKGYQFEEENPLRD---HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA 100
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
+ LG +E Q A+ + +P A + V + N A L
Sbjct: 101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160
Query: 254 VSPNFEIAKNNM--AIALTDLGTKVKLEGDINQG------VAYYKKALYYNWHYADAM-- 303
+P + LG ++ G + + A+ + D
Sbjct: 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220
Query: 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
LGV + ++D A+ + A P+ N LG + + ++AV Y+ AL +
Sbjct: 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280
Query: 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-------- 415
+P + +S NLG+ G A E +A+ G + +
Sbjct: 281 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 340
Query: 416 ---GSISLAIDAYEQCLKIDPD 434
G A + L
Sbjct: 341 SMLGQSDAYGAADARDLSTLLT 362
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 4e-64
Identities = 57/325 (17%), Positives = 103/325 (31%), Gaps = 40/325 (12%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+A+ L+E +++D ++EA G LA +
Sbjct: 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 124
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL--TDLGTS 166
++L P N A + + +E +A E L P+Y LG S
Sbjct: 125 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184
Query: 167 LKLAGNTQDG------IQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAA 218
++ G+ + + A+++DP LGV+++ +YD A+ C+ A
Sbjct: 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
RP + +G N E A+A Y R L + P + ++ N+ I+ +L
Sbjct: 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL------ 298
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
G + V ++ +AL G +
Sbjct: 299 -GAHREAVEHFLEALNMQRKSRGPRGEGGAMS-----------------------ENIWS 334
Query: 339 NLGVIYKDRDNLDKAVECYQMALSI 363
L + D LS
Sbjct: 335 TLRLALSMLGQSDAYGAADARDLST 359
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 7e-31
Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 16/194 (8%)
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKF------------DMAIVFYELAFHFNPHC--- 333
+++A D L EM K D+ Y+ + F
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 334 -AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392
G+ +L AV ++ A+ P ++ LG + A +
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
+ + P A L V + + A + L+ P + G
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182
Query: 453 HDDKLFEAHRDWGK 466
++ +
Sbjct: 183 PSKRILGSLLSDSL 196
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 4e-70
Identities = 42/333 (12%), Positives = 102/333 (30%), Gaps = 24/333 (7%)
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
E+V +N + + + DP + L +L
Sbjct: 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL 69
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-MQYDTALGCYEKAALERP 222
+ ++ + + P +++ +G Y + + + A KA
Sbjct: 70 N-------KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
Y A+ G + + + A+A Y + + + + +
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-------NS 175
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--------- 333
++ +AL M+ +GV + ++ A ++ A
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
NNLG + + +A++ ++ AL + P + + + +G ++++ G + A +
Sbjct: 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
A+ + LG S A +
Sbjct: 296 ALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGAD 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 3e-69
Identities = 50/298 (16%), Positives = 92/298 (30%), Gaps = 17/298 (5%)
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
V+ L + + + ++ DP +A EL + + K
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83
Query: 219 LERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277
P ++ +G Y G E A + + + A +
Sbjct: 84 DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES---- 139
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
+ +Q +A Y A M +G+ YG +A F+ A P
Sbjct: 140 ---EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYTVQGKMDAAA 388
+ +GV+ A + + AL + LNNLG V K A
Sbjct: 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
+ +A+ P A Y+ +G ++ G+ A+D + L + D + +
Sbjct: 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 5e-69
Identities = 50/324 (15%), Positives = 114/324 (35%), Gaps = 24/324 (7%)
Query: 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134
++ N++ + ++ + S ++ DP +A + + E
Sbjct: 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANE 74
Query: 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE-ALKIDPHYAPA 193
HK + PS + +G + G+ + ++Y A ++ Y PA
Sbjct: 75 LFYLSHKLVDLYPSN-------PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
+ G ++ ++D A+ Y AA +G+ Y + + A + + L+
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL---------YYNWHYADAMY 304
++P + + + G+ ++ AL + +
Sbjct: 188 IAPEDPFVMHEVGVVAFQN-------GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240
Query: 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
NLG ++ K+ A+ ++ A P A + +G I+ N + AV+ + AL ++
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAA 388
+ + S+ LG + A
Sbjct: 301 RDDTFSVTMLGHCIEMYIGDSEAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 2e-58
Identities = 43/270 (15%), Positives = 80/270 (29%), Gaps = 15/270 (5%)
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
E++ +L + + + P +A
Sbjct: 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68
Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
+ + + P+ ++ + +G K Y KA
Sbjct: 69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK------NEHARRYLSKATTLEK 122
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
Y A G ++ + D A+ Y A C +G+ Y +N A +
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI---------AANPTYAEAYNNL 408
ALSI P ++ +GVV G+ A + A+ + NNL
Sbjct: 183 SQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
G + R + A+D + Q L + P + +
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNAST 272
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 1e-52
Identities = 44/284 (15%), Positives = 88/284 (30%), Gaps = 28/284 (9%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL---AFDSFSEAVK 110
+ L NK + L +++ N + G M G A S+A
Sbjct: 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV--GHKNEHARRYLSKATT 119
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
L+ A G + E +A +Y A + + + KLA
Sbjct: 120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-NSKLA 178
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---------ALER 221
+ + +AL I P + +GVV + ++ TA + A +
Sbjct: 179 ------ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
+ N+G + + A+ + + L + P + + + +G +
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG-------N 285
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
V Y+ AL ++ LG + A + ++
Sbjct: 286 FENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGADI 329
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 2e-49
Identities = 33/251 (13%), Positives = 65/251 (25%), Gaps = 16/251 (6%)
Query: 212 GCYEKAALER--------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
G Y K + + ++ + D + + P
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVF 322
L +L +L K + + + +G Y + + A +
Sbjct: 61 VHIGTLVELNKANEL-------FYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY 113
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
A A G + D+A+ Y A + + +G+ Y +
Sbjct: 114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
A +A++ P + +GV+ G A + L+ N
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Query: 443 LLAMNYINEGH 453
N GH
Sbjct: 234 KWEPLLNNLGH 244
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 4e-43
Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 20/238 (8%)
Query: 49 KDALSYANI----LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
+ +S+ + L +K A + A I G +++ A +
Sbjct: 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147
Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+ A +L + G+ Y A + +ALS P V+ ++G
Sbjct: 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------PFVMHEVG 200
Query: 165 TSLKLAGNTQDGIQKYYEALKI---------DPHYAPAYYNLGVVYSELMQYDTALGCYE 215
G + + + +AL+ + P NLG V +L +Y AL +
Sbjct: 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+A + P A Y +G I+ G+ E+A+ + L + + + + +
Sbjct: 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYI 318
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 3e-69
Identities = 55/372 (14%), Positives = 116/372 (31%), Gaps = 41/372 (11%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
L + + DAL+ + ++ D N A+ + + A ++ + L
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD 69
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--------DLGTS 166
A G L +G+L EA + + K L ++PS + E + ++
Sbjct: 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
+ I + L++ A + + + A+ + A+ + E
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286
A+ + +Y GD E +++ CL + + + + KL I
Sbjct: 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK-------KLNKLIESAE 242
Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGV 342
+ ++ A YE P AE + +
Sbjct: 243 ELIRDG----------------------RYTDATSKYESVMKTEPSVAEYTVRSKERICH 280
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
+ + +A+ L ++P+ +L + Y ++ D A + E A N
Sbjct: 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340
Query: 403 EAYNNLGVLYRD 414
+ L R
Sbjct: 341 QIREGLEKAQRL 352
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 7e-67
Identities = 46/362 (12%), Positives = 100/362 (27%), Gaps = 45/362 (12%)
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ H G G+L +A +H A+ DP I T G ++
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-------YIAYYRRATVFLAMGKSK 54
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ + + + + A G + + + D A ++K P E +
Sbjct: 55 AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114
Query: 235 YK---------------NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
K + D +AI ++ L V + A G
Sbjct: 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG------ 168
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
+ + ++ K A +A Y + Y ++ ++++ + +
Sbjct: 169 -EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227
Query: 340 L------------GVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGK 383
A Y+ + +P+ +S + ++ K
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287
Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
A + + + P A + Y AI YE + + + + +
Sbjct: 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347
Query: 444 LA 445
A
Sbjct: 348 KA 349
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 2e-45
Identities = 44/243 (18%), Positives = 72/243 (29%), Gaps = 9/243 (3%)
Query: 40 GSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+K E + S A + A+ + +LE + E + C + R
Sbjct: 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR 171
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
A A KL N A LY G + + L D +K V
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Query: 160 -----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTA 210
L + L G D KY +K +P A + + +S+ + A
Sbjct: 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
+ + P A + Y + AI YE + N + + + A
Sbjct: 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351
Query: 271 DLG 273
L
Sbjct: 352 LLK 354
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 5e-27
Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 18/174 (10%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ LG + A+ + A +P A ++ A+
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-------- 411
+++K +F+ + G + QGK+D A + +K + +NP+ E L
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 412 -------YRDAGSISLAIDAYEQCLKIDPDSRNAGQNR---LLAMNYINEGHDD 455
D + AI ++ L++ + R + + D
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 4e-25
Identities = 25/133 (18%), Positives = 41/133 (30%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
E LG L A+ + A+ P+ + V+ GK AA + K
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
IA + A G L G + A D +++ LK +P + + +
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 454 DDKLFEAHRDWGK 466
D
Sbjct: 123 LRSQALDAFDGAD 135
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 4e-17
Identities = 24/169 (14%), Positives = 45/169 (26%), Gaps = 23/169 (13%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAH------------IGKGICLQMQNMGRLAF 102
+ + +L+ L+ D + I L A
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254
Query: 103 DSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+ +K +P A + + + + VEA + L +P A
Sbjct: 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA------ 308
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
L D + + + IQ Y A + + + L L Q
Sbjct: 309 -LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 233 bits (595), Expect = 4e-69
Identities = 55/403 (13%), Positives = 118/403 (29%), Gaps = 21/403 (5%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + F +A+ Y+ +E D + C + ++A+++ P
Sbjct: 32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
++ A + G +A LS + + A + +L + +
Sbjct: 92 HSKALLRRASANESLGNFTDAMFDL-SVLSLNGDFDGA--SIEPMLERNLNKQAMKVLNE 148
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELM--------QYDTALGCYEKAALERPMYAE 226
+ + ++ P G+ S L YDTA A +
Sbjct: 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208
Query: 227 AYCNM--GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
+ ++ K+ S ++ + N +A I ++
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN-------NLLD 261
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
++++ + ++ L + + F++ A NP + G +Y
Sbjct: 262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320
Query: 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404
+ A E +Q A S+ P L + QGK + + PT E
Sbjct: 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380
Query: 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
+ D G AI Y+ +++ +
Sbjct: 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 6e-69
Identities = 53/457 (11%), Positives = 114/457 (24%), Gaps = 68/457 (14%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ + Y + S + LE + +A + + + A
Sbjct: 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116
Query: 106 SEAVKLDPQN------------------------ACAHTHCGILYKDEGRLVEAAESYHK 141
S + + + L +
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176
Query: 142 ALSADPSYKPAAECLAIVLTD-----------------LGTSLKLAGNTQDGIQKYYEAL 184
L + A L K +
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236
Query: 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+ + A A G+ + A +++ P +Y + + ++ + +
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEF 295
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
+++ + ++P + + L D ++KA N
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQ-------DYKNAKEDFQKAQSLNPENVYPYI 348
Query: 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
L + KF + F+ P E I DR + D A++ Y +A ++
Sbjct: 349 QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408
Query: 365 PNFSQSLNNLGVVYT----------------VQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+ +G + + K +AA +++ KA +P +A L
Sbjct: 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
L I AI+ +E + Q A
Sbjct: 469 AQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFA 505
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 231 bits (592), Expect = 1e-68
Identities = 66/381 (17%), Positives = 128/381 (33%), Gaps = 42/381 (11%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
+ + + + + A AL L++ + L ++ + + L
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
A A + GI + + L++A ++++ P+ L +L N+
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN--------SYIFLALTLADKENS 292
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
Q+ + + +A+ ++P Y P YY+ G +Y L Y A ++KA P Y +
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLAC 352
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ +G + A + P A LTD G D + + Y A
Sbjct: 353 LLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG-------DFDTAIKQYDIAK 405
Query: 294 YYNWHYADAMYNLGVAYGEML----------------KFDMAIVFYELAFHFNPHCAEAC 337
+G G+ KF+ AI A +P +A
Sbjct: 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
L + + +D+A+E ++ + + + L A A I+K + A
Sbjct: 466 IGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT---------FAEAAKIQKRLRA 516
Query: 398 NPTYAEAYNNLGVLYRDAGSI 418
+P + YR G +
Sbjct: 517 DPIISAKMELTLARYRAKGML 537
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 1e-58
Identities = 58/394 (14%), Positives = 116/394 (29%), Gaps = 39/394 (9%)
Query: 63 KFVDALALYEIVLEKD----SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118
++ + +G A + A++LDP
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178
+++ Y G L + E KAL P + A A L GN D +
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL-------GNFTDAM- 113
Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238
L ++ + A E A+ + ++ + +
Sbjct: 114 FDLSVLSLNGDFDGASIEP---MLERNLNKQAMKVLNENL------SKDEGRGSQVLPSN 164
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV-----------------KLEGD 281
L S ++ L VS + + A AL + K
Sbjct: 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM 224
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+ ++ + A A+ G+ + A V + + + +P + L
Sbjct: 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLA 283
Query: 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
+ D++N + + +Q A+ + P + + + G +Y + A E +KA + NP
Sbjct: 284 LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
Y L L G + + + + P
Sbjct: 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 2e-58
Identities = 53/355 (14%), Positives = 114/355 (32%), Gaps = 47/355 (13%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G + + PS + A A+ L + G A N + I+ Y A+++DP+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQA---YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN 57
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
Y N+ Y + + KA +P +++A ++ G+ A+
Sbjct: 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117
Query: 250 RCLAVSPNFEIA-------------------------KNNMAIALTDLGT---------- 274
L+++ +F+ A + + L +
Sbjct: 118 -VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176
Query: 275 -----KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE--MLKFDMAIVFYELAF 327
V + + A AL + D Y + + + +
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
+ A A G+ + ++NL A Q ++++ P S L + +
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ +KA+ NP Y Y + G +Y A + +++ ++P++
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 3e-25
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 5/170 (2%)
Query: 315 KFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
+P A N G + N ++A++ YQ A+ + PN
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
+N+ Y G ++ E KA+ P +++A G+ + A+ L
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV-LS 120
Query: 431 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
++ D A +L N + +D G+ L S +
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF 170
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 4e-23
Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 30/216 (13%)
Query: 280 GDINQGVAYYKKAL----YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
G G + YA + N G + F+ AI +Y+ A +P+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
+N+ Y +L+K +E AL IKP+ S++L G A + +
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVL 119
Query: 396 AANPTYAEA-------------------------YNNLGVLYRDAGSISLAIDAYEQCLK 430
+ N + A + S++ ++ L+
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179
Query: 431 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
+ + ++ + A+ +
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 2/104 (1%)
Query: 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD 103
K S KF A+ L E D + +A IG A +
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
F ++ L + + ++ + + +
Sbjct: 484 LFEDSAILARTMDEKLQ--ATTFAEAAKIQKRLRADPIISAKME 525
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 226 bits (577), Expect = 2e-67
Identities = 62/418 (14%), Positives = 129/418 (30%), Gaps = 38/418 (9%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
L + + DAL+ + ++ D N A+ + + A ++ ++L
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--------DLGTS 166
A G L +G+L EA + + K L ++PS E + ++ +
Sbjct: 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
+G+ I + L++ A + + + A+ + A+ + E
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG- 285
A+ + +Y GD E +++ CL + + + + E I G
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR 272
Query: 286 ----VAYYKKALYYN----WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
+ Y+ + + + + + + K AI P A
Sbjct: 273 YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
+ Y + D+A++ Y+ A N Q L + + +
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAY-EQCLKIDPDSRNAGQNRLLA---MNYINE 451
N E I AY + L+ PD+ + + A I
Sbjct: 393 NAKKQE-----------------IIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 3e-59
Identities = 52/387 (13%), Positives = 106/387 (27%), Gaps = 49/387 (12%)
Query: 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134
+ +VE H+ G L A F AV DP N A+ ++ G+
Sbjct: 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKA 78
Query: 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194
A K + + A +L G + + + LK +P
Sbjct: 79 ALPDLTKVIQLKMDFTAARLQRGHLLLKQ-------GKLDEAEDDFKKVLKSNPSENEEK 131
Query: 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254
L + + + + GD +AIA ++ L V
Sbjct: 132 EAQS-------------------QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172
Query: 255 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 314
+ A G+ + ++ K A +A Y + Y ++
Sbjct: 173 CVWDAELRELRAECFIKE-------GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG 225
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYK------------DRDNLDKAVECYQMALS 362
++++ + + + K A Y+ +
Sbjct: 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285
Query: 363 IKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418
+P+ +S + ++ K A + + + P A + Y
Sbjct: 286 TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY 345
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLA 445
AI YE + + + + + A
Sbjct: 346 DEAIQDYETAQEHNENDQQIREGLEKA 372
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 3e-49
Identities = 46/333 (13%), Positives = 99/333 (29%), Gaps = 56/333 (16%)
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
H G+ E ++ K L +LG L AG D +
Sbjct: 5 HHHSSGVDLGTENLYFQSMADVEKHL------------------ELGKKLLAAGQLADAL 46
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
+++ A+ DP AYY V+ + + AL K + + A G +
Sbjct: 47 SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106
Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
+G L+ A +++ L +P+ K ++
Sbjct: 107 QGKLDEAEDDFKKVLKSNPSENEEKEA--------------------------QSQLIKS 140
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
+ + + + AI F + AE + KA+
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR---- 413
+ A +K + +++ + +Y G + + + + + + + + + + +
Sbjct: 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260
Query: 414 --------DAGSISLAIDAYEQCLKIDPDSRNA 438
G + A YE +K +P
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEY 293
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 6e-46
Identities = 38/268 (14%), Positives = 78/268 (29%), Gaps = 33/268 (12%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ +++ GV Y ++ E + +G G L A++ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADV-----------EKHLELGKKLLAAGQLADALSQFH 50
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
+ P+ IA A + G + K + + A G
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAM-------GKSKAALPDLTKVIQLKMDFTAARLQRGHL 103
Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACN---------------NLGVIYKDRDNLDKAV 354
+ K D A ++ NP E + + + A+
Sbjct: 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
L + ++ + +G+ A ++ A EA+ + LY
Sbjct: 164 AFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ 223
Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNR 442
G L++ +CLK+D D + +
Sbjct: 224 LGDHELSLSEVRECLKLDQDHKRCFAHY 251
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-45
Identities = 60/411 (14%), Positives = 117/411 (28%), Gaps = 71/411 (17%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ ++Y A + + K AL V++ A + +G L Q A D F
Sbjct: 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117
Query: 106 SEAVKLDPQNACAHTHCGILYK---------------DEGRLVEAAESYHKALSADPSYK 150
+ +K +P L K G A K L
Sbjct: 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177
Query: 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
E A G + I A K+ A+Y + +Y +L ++ +
Sbjct: 178 ELRELRAECFIKEG-------EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYK------------NRGDLESAIACYERCLAVSPNF 258
L + + + + + K G A + YE + P+
Sbjct: 231 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI 290
Query: 259 E----IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 314
+K + + + + + L +A+ + AY
Sbjct: 291 AEYTVRSKERICHCFSKDE-------KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE 343
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-----------------DNLDKAVECY 357
+D AI YE A N + + L + + ++ Y
Sbjct: 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAY 403
Query: 358 -QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
++AL P+ Q+ + AA K + ++P + +++
Sbjct: 404 RKLALQWHPDNFQNEEEKKKAEKKFIDIAAA-----KEVLSDPEMRKKFDD 449
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 1e-44
Identities = 60/319 (18%), Positives = 95/319 (29%), Gaps = 20/319 (6%)
Query: 22 FLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN 81
F K +S P + A +K E + S A + A+A + +LE +
Sbjct: 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD 176
Query: 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
E + C + R A A KL N A LY G + +
Sbjct: 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236
Query: 142 ALSADPSYKPAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---- 192
L D +K V L + L G D KY +K +P A
Sbjct: 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
+ + +S+ + A+ + P A + Y + AI YE
Sbjct: 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV-----------AYYKKALYYNWHYAD 301
+ N + + + A L K + GV AY K AL ++
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416
Query: 302 AMYNLGVAYGEMLKFDMAI 320
A + + A
Sbjct: 417 NEEEKKKAEKKFIDIAAAK 435
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 7e-34
Identities = 34/244 (13%), Positives = 67/244 (27%), Gaps = 33/244 (13%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
M+ + + GV ++A E + L G +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAA-------GQL 42
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
++ + A+ + A Y + M K A+ A G
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFS---------------QSLNNLGVVYTVQGKMDAA 387
+ + LD+A + ++ L P+ + Q L + + G AA
Sbjct: 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
++K + AE + G AI + K+ D+ A
Sbjct: 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222
Query: 448 YINE 451
+ +
Sbjct: 223 QLGD 226
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 6e-26
Identities = 27/168 (16%), Positives = 49/168 (29%), Gaps = 11/168 (6%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+ ++ GV G + ++ E LG L A+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSM-----------ADVEKHLELGKKLLAAGQLADALSQFH 50
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418
A+ P+ + V+ GK AA + K I + A G L G +
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
A D +++ LK +P + + + G
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 225 bits (574), Expect = 2e-66
Identities = 63/421 (14%), Positives = 125/421 (29%), Gaps = 38/421 (9%)
Query: 55 ANILRSRNKFVDALALYE---IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
A+ KF DA+ + + + ++E + + + Q + + F A
Sbjct: 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT 139
Query: 112 DPQNACAHTHCGIL-------------YKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+ + + + +Y ++ AD L
Sbjct: 140 PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199
Query: 159 VLTD-----LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213
+ + K A ++ + K E K+ A + + G+ A
Sbjct: 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+KA +E +Y M +I +R D +++ L + N + L
Sbjct: 260 IKKA-IELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
+ +Q + KA + L KFD + A P
Sbjct: 319 -------NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT---------VQGKM 384
E N I D+++ DKA++ Y +A+ ++ + +
Sbjct: 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431
Query: 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444
A ++EKA +P +A L + I AI +E+ + Q
Sbjct: 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491
Query: 445 A 445
A
Sbjct: 492 A 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 2e-65
Identities = 57/418 (13%), Positives = 115/418 (27%), Gaps = 38/418 (9%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSE-AVKLDP 113
+ S + + LE + + + + A S ++ D
Sbjct: 46 SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105
Query: 114 QNACAHTHC--GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL-- 169
+A + + +L E A + + S+
Sbjct: 106 NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165
Query: 170 ----AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE------------LMQYDTALGC 213
+ Y E+ + D NL E ++ L
Sbjct: 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ + A + + G+ + D A ++ + + P + MA+ + D
Sbjct: 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRN 284
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
D + Y+ KAL + + + Y+ G + +D A ++ A +P
Sbjct: 285 -------DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
L + + D + A P + N + T + D A + +
Sbjct: 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL 397
Query: 394 AIAANPTYAEAYNNLGVLYRDA---------GSISLAIDAYEQCLKIDPDSRNAGQNR 442
AI Y + L A + A + E+ K+DP S A
Sbjct: 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 1e-64
Identities = 53/398 (13%), Positives = 116/398 (29%), Gaps = 33/398 (8%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF----- 105
L+ + + + KF D E + + K L F F
Sbjct: 117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176
Query: 106 ----SEAVKLDPQNACA-----HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
E+ + D + K + +AA + + L + + E L
Sbjct: 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI L G L + + +A+++ P +Y + ++ ++ ++K
Sbjct: 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYFDK 295
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
A + Y + G + + + A +++ + P +A
Sbjct: 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN--- 352
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
+ + +A + + FD A+ Y+LA
Sbjct: 353 ----KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408
Query: 337 CNNLGVIY---------KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
+ + +N +A + A + P Q+ L + Q +D A
Sbjct: 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
+ E++ T E + + +A + I +
Sbjct: 469 ITLFEESADLARTMEEKLQAIT--FAEAAKVQQRIRSD 504
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 1e-61
Identities = 54/420 (12%), Positives = 122/420 (29%), Gaps = 27/420 (6%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
K AL+ N K+ DA+ Y LE + + C + +
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMS 62
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
++A++L P + + G+ +A LS + + A+ + +
Sbjct: 63 TKALELKPDYSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDAS---IEPMLERNL 118
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL-------------GVVYSELMQYDTALG 212
+ + ++ A + + + + +
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178
Query: 213 CYEKAALERPMYAEAYCNM-----GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
Y+++ N+ K A +E L + E K +AI
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
+L G L+ D KKA+ ++ + + + +++ A
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
+ + + + G + N D+A + + A + P L + + K D
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
+ +A P E N + D A+ Y+ ++++ +
Sbjct: 358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 2e-56
Identities = 58/368 (15%), Positives = 113/368 (30%), Gaps = 45/368 (12%)
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIG------------KGICLQMQNMGRLAFDSFSE 107
K A Y+ E D + + + D +E
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
KL + A + H GI + + A E KA+ P + +
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN--------SYIYMALIM 280
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
++ + + +ALK+D + + YY+ G + L YD A ++KA P
Sbjct: 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
Y + + + + P N A LTD D ++ +
Sbjct: 341 YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN-------DFDKALK 393
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEML---------KFDMAIVFYELAFHFNPHCAEACN 338
Y A+ + G+ F A E A +P +A
Sbjct: 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI 453
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
L + ++++D+A+ ++ + + + L + A A +++ I ++
Sbjct: 454 GLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT---------FAEAAKVQQRIRSD 504
Query: 399 PTYAEAYN 406
P A+
Sbjct: 505 PVLAKKIQ 512
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 183 bits (465), Expect = 7e-51
Identities = 40/351 (11%), Positives = 100/351 (28%), Gaps = 30/351 (8%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
+ A A G + + +A + Y+ AL + ++L G+
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--------PVFYSNLSACYVSVGD 54
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---RPMYAEAYC 229
+ ++ +AL++ P Y+ L ++ A+ +L E
Sbjct: 55 LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL------EGDIN 283
+ + L+ + A + V
Sbjct: 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174
Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEML------------KFDMAIVFYELAFHFNP 331
A Y ++ + + + NL E F+ +
Sbjct: 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391
A + + G+ +++ A E + A+ + P S + ++ +
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYF 293
Query: 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+KA+ + + Y + G + + A +++ ++DP++
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-23
Identities = 39/254 (15%), Positives = 79/254 (31%), Gaps = 31/254 (12%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
E+ YA A + G + + AI Y L + + + +N++ +
Sbjct: 1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSV------- 52
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE---LAFHFNPHCAEA 336
GD+ + V KAL Y+ + A + KF A+ L FN E
Sbjct: 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-------------SLNNLGVVYTVQGK 383
+ + L + A + S + K
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172
Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-----IDPDSRNA 438
+ +++ A+ +NL R S A +++ + + +D ++ +
Sbjct: 173 PELTFANYDESNEADKELMNGLSNLY--KRSPESYDKADESFTKAARLFEEQLDKNNEDE 230
Query: 439 GQNRLLAMNYINEG 452
LA++ + G
Sbjct: 231 KLKEKLAISLEHTG 244
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 1e-64
Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 44/283 (15%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
+ +H + P + ++ G+ + + + +A++ + A
Sbjct: 3 SSHHHHHHSSGLVPR---GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP 59
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
Y N + S + + + AL Y+KA A AY G +Y + + A +E+ L
Sbjct: 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313
D Y LG ++
Sbjct: 120 AGME-----------------------------------------NGDLFYMLGTVLVKL 138
Query: 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373
+ +A+ + + A N + EA G+ + LD+A+ + P + + N
Sbjct: 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198
Query: 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
GV Y + + A EM++KAI P + A + +L
Sbjct: 199 AGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 206 bits (528), Expect = 8e-63
Identities = 47/248 (18%), Positives = 93/248 (37%), Gaps = 11/248 (4%)
Query: 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKN 263
++ + ++ P + G R GD E A + + + + I
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
N A L+ + ++ + +A+Y KAL + A A Y G Y + A +
Sbjct: 62 NFANLLSSVN-------ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114
Query: 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
E A + LG + + A+ Q A+ + N +++ G+ +G
Sbjct: 115 EKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM 174
Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
+D A +P +A+A+ N GV Y + A++ ++ + I PD A +
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234
Query: 444 LAMNYINE 451
L ++ +
Sbjct: 235 LLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 191 bits (489), Expect = 4e-57
Identities = 51/287 (17%), Positives = 97/287 (33%), Gaps = 52/287 (18%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCG----ILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
+ + L P+ + + G + G +AAE++ KA+ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED------- 56
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI + L + + Y +AL++D A AYY G VY Y A +EK
Sbjct: 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
A + + +G + + A+ +R + ++ N
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------------------- 157
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
+A + G+ D A+ + +P A+A
Sbjct: 158 ----------------------DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
N GV Y ++N +KA+E A+ I+P+ +L+ ++
Sbjct: 196 FYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 2e-50
Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 3/202 (1%)
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
+ S+ + + P + + GD + + KA+ N A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQ---QMGRGSEFGDYEKAAEAFTKAIEENKEDA 57
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
N + + + A+ FY+ A + A A G +Y ++ +A + ++ A
Sbjct: 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
L LG V + A +++A+ N EA G+ + G +
Sbjct: 118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177
Query: 421 AIDAYEQCLKIDPDSRNAGQNR 442
A+ + + DP +A N
Sbjct: 178 ALSQFAAVTEQDPGHADAFYNA 199
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 2e-50
Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 7/224 (3%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
+ A + +E++ + +I L N A + +A+
Sbjct: 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL 84
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+LD A A+ G +Y + EA + + KAL A + LGT L
Sbjct: 85 ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVK 137
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
+ + A++++ + A + G+ + D AL + + P +A+A+
Sbjct: 138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY 197
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
N GV Y + + E A+ ++ + + P+ +A + +
Sbjct: 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 3e-37
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 7/186 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
AN+L S N+ ALA Y+ LE DS A+ G G ++ M + A D F +A++ +
Sbjct: 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
N G + + A +A+ + + G L G
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-------TEARFQFGMCLANEGMLD 176
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ + ++ + DP +A A+YN GV Y+ + AL +KA +P + A ++
Sbjct: 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236
Query: 235 YKNRGD 240
+
Sbjct: 237 GHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-26
Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 7/153 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N+ + + +A ++E L N + G L +LA AV+L+
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ A G+ +EG L EA + DP + A + N +
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE-------NRE 210
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
++ +A+ I P + A + ++ +
Sbjct: 211 KALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 2e-63
Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 12/257 (4%)
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
+ + +++ G+V D K R +AY +G+ Y RG+ E A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
+ L + P+ A +A+ + Y+KAL + A + N
Sbjct: 58 VPLRKALEIDPSSADAHAALAVVFQTEM-------EPKLADEEYRKALASDSRNARVLNN 110
Query: 306 LGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
G E +++ A P + NLG++ +A E ++ +L +
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170
Query: 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423
N + + + + A + + A + L + A
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230
Query: 424 AYEQCLKIDPDSRNAGQ 440
Q ++ P S +
Sbjct: 231 YGLQLKRLYPGSLEYQE 247
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 2e-55
Identities = 43/261 (16%), Positives = 77/261 (29%), Gaps = 19/261 (7%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ + H G++ + ++ K LG
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH---MGDQNPLKTDKGRDEA-------RDAYIQLGLGYLQR 50
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
GNT+ +AL+IDP A A+ L VV+ M+ A Y KA A N
Sbjct: 51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110
Query: 231 MGVIYKNRGDLESAIACYERCLAVS--PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
G + E A + P N+ + + Q Y
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-------KKPAQAKEY 163
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
++K+L N + + + ++ A +Y+L A + + K +
Sbjct: 164 FEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223
Query: 349 NLDKAVECYQMALSIKPNFSQ 369
+ D A + P +
Sbjct: 224 DRDTAASYGLQLKRLYPGSLE 244
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-42
Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 16/215 (7%)
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322
++ + L G GD N K DA LG+ Y + + A V
Sbjct: 8 HHHSSGLVPRG---SHMGDQN-----PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVP 59
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
A +P A+A L V+++ A E Y+ AL+ ++ LNN G Q
Sbjct: 60 LRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119
Query: 383 KMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
+ + A + + +A P + + NLG++ + A + +E+ L+++ + +
Sbjct: 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL 179
Query: 441 NRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQY 475
+A E + A R + F + Q
Sbjct: 180 E--MADLLYKER---EYVPA-RQYYDLFAQGGGQN 208
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 6e-39
Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 9/211 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
R A LE D + +AH + Q + +LA + + +A+ D +
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSLKLAGN 172
NA + G ++ R EA + +A P + V +LG
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER-------SRVFENLGLVSLQMKK 156
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+ + ++L+++ + + + + +Y A Y+ A A +
Sbjct: 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI 216
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
+ K D ++A + + + P +
Sbjct: 217 RLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 8e-09
Identities = 16/103 (15%), Positives = 25/103 (24%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ K A +E L + + L + A + + Q
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
NA + L K AA + P E A
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 3e-62
Identities = 40/400 (10%), Positives = 99/400 (24%), Gaps = 18/400 (4%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
++ A+ ++ L + V A Q +
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L P A G + + +A P A +
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA-------IASHDG 336
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + G L L +A P
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV 396
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285
A + G + ++ + + ++P+ +A + L + +
Sbjct: 397 VAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL-------ETVQRL 448
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
+ + A+ + + + A P A + +
Sbjct: 449 LPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQ 508
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
+ + + A + P+ ++ + G + ++ +A P A
Sbjct: 509 ALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 568
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ G + ++ + Q + A + +
Sbjct: 569 ASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 219 bits (558), Expect = 4e-61
Identities = 41/400 (10%), Positives = 101/400 (25%), Gaps = 18/400 (4%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
++ A+ ++ L + V A Q +
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L P A + + +A P + + G
Sbjct: 250 CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ-------VVAIASHGG 302
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + L L +A P
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQV 362
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285
A + G + ++ + + ++P+ +A+ G K L + +
Sbjct: 363 VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ-------VVAIASNGGKQAL-ETVQRL 414
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
+ +A A+ + + + P A + +
Sbjct: 415 LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQ 474
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
+ + + + A + P+ ++ + + ++ +A P A
Sbjct: 475 ALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ G + ++ + Q + PD A +
Sbjct: 535 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 574
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 217 bits (553), Expect = 2e-60
Identities = 39/396 (9%), Positives = 97/396 (24%), Gaps = 14/396 (3%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
A++ ++ L + V A Q + +
Sbjct: 397 VAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTH 456
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
L P A + + + +A P + + +
Sbjct: 457 GLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQ-------VVAIASNIGGKQA 509
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
Q + +A + P A + G L L +A P A
Sbjct: 510 LATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 569
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
+ G + ++ + + ++ +A + L T +L +
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRL-------LPVL 622
Query: 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349
+A A+ + + + A P A + G + +
Sbjct: 623 CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 682
Query: 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409
+ + + A + ++ + + ++ +A P A + G
Sbjct: 683 VQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 742
Query: 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ ++ + Q + P A + +
Sbjct: 743 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGG 778
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 217 bits (553), Expect = 2e-60
Identities = 42/406 (10%), Positives = 100/406 (24%), Gaps = 22/406 (5%)
Query: 45 GFEGKDALSYANILRSRNKFVDAL-----ALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+ + A R ++A+ AL L V A Q +
Sbjct: 152 QLDTGQLVKIAK--RGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQ 209
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+A L P A + + +A P +
Sbjct: 210 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ-------VVA 262
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+ + Q + +A + P A + G L L +A
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHG 322
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
P A + + ++ + + ++P+ +A + L
Sbjct: 323 LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL------- 375
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
+ + + +A A+ + G + + A P A +
Sbjct: 376 ETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIAS 434
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
+ + + + + + P ++ + + ++ +A P
Sbjct: 435 HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494
Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A + + ++ + Q + PD A +
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG 540
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 2e-59
Identities = 43/380 (11%), Positives = 103/380 (27%), Gaps = 15/380 (3%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
DA L L+ D+G + +G M+ + + L P A
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
+ + +A P+ + + + Q + +A
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQ-------VVAIASHDGGKQALETMQRLLPVLCQAHG 254
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
+ P A + L L +A P A + G + ++ +
Sbjct: 255 LPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLL 314
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
+ ++P+ +A + L T +L + +A A+ +
Sbjct: 315 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRL-------LPVLCQAHGLTPDQVVAIAS 367
Query: 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
G + + A P A + G + + + + + A + P
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTP 426
Query: 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
+ ++ + + ++ + P A + + ++ +
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486
Query: 426 EQCLKIDPDSRNAGQNRLLA 445
Q + PD A + +
Sbjct: 487 CQAHGLTPDQVVAIASNIGG 506
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 3e-57
Identities = 37/386 (9%), Positives = 94/386 (24%), Gaps = 14/386 (3%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S+ ++ L + V A Q + +A L
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P A + + +A P + + G +
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ-------VVAIASNGGGKQALET 546
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q + +A + P A + G L L +A + A +
Sbjct: 547 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI 606
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ ++ + + ++P +A + L + + + +A
Sbjct: 607 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE-------TVQRLLPVLCQA 659
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A+ + G + + A A + + + + +
Sbjct: 660 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQR 719
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ A + P+ ++ + G + ++ +A P A +
Sbjct: 720 LLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGK 779
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNA 438
+ ++ + Q + A
Sbjct: 780 QALETVQRLLPVLCQDHGLTLAQVVA 805
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 1e-52
Identities = 36/391 (9%), Positives = 92/391 (23%), Gaps = 14/391 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
++ L + V A Q + +A L P
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPD 529
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A G + + +A P A + G + Q
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA-------IASNGGGKQALETVQ 582
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ +A + A + L L +A P A +
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
+ ++ + + ++P+ +A + L + + + +A
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE-------TVQRLLPVLCQAHG 695
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
A+ + + + A P A + G + + + + +
Sbjct: 696 LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 755
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
A + P ++ + + ++ + A + +
Sbjct: 756 PVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQA 815
Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
++ + Q + D A + +
Sbjct: 816 LETVQRLLPVLCQAHGLTQDQVVAIASNIGG 846
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 2e-48
Identities = 37/380 (9%), Positives = 88/380 (23%), Gaps = 14/380 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
++ L + V A G Q + +A L P
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A G + + +A A L T Q
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALET-------VQ 616
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ +A + P A + L L +A P A + G
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 676
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
+ ++ + + ++ +A + L + + + +A
Sbjct: 677 KQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALE-------TVQRLLPVLCQAHG 729
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
A+ + G + + A P A + + + + + +
Sbjct: 730 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLL 789
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ ++ + + ++ +A A + +
Sbjct: 790 PVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQA 849
Query: 415 AGSISLAIDAYEQCLKIDPD 434
++ + Q + PD
Sbjct: 850 LETVQRLLPVLCQDHGLTPD 869
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 2e-48
Identities = 36/347 (10%), Positives = 88/347 (25%), Gaps = 10/347 (2%)
Query: 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
++ + P+ R +EA + L P + + I
Sbjct: 102 GTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKI 161
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
G + L + P A + L L +A
Sbjct: 162 --AKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAH 219
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
P A + + ++ + + + P+ +A + L
Sbjct: 220 GLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALE----- 274
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
+ + + +A A+ + G + + A P A
Sbjct: 275 --TVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 332
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
+ + + + + + A + P+ ++ + G + ++ +A
Sbjct: 333 SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 392
Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
P A + G + ++ + Q + PD A +
Sbjct: 393 PDQVVAIASNGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 438
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 2e-45
Identities = 32/390 (8%), Positives = 90/390 (23%), Gaps = 14/390 (3%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S ++ L + V A G Q + +A L
Sbjct: 536 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 595
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
A + + +A P+ + + +
Sbjct: 596 QVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ-------VVAIASHDGGKQALET 648
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q + +A + P A + G L L +A A +
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNN 708
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ ++ + + ++P+ +A + L + + + +A
Sbjct: 709 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE-------TVQRLLPVLCQA 761
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A+ + + + A + + + + +
Sbjct: 762 HGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQR 821
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ A + + ++ + + ++ + P A +
Sbjct: 822 LLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGK 881
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ ++ + Q + D A +
Sbjct: 882 QALETVQRLLPVLCQDHGLTLDQVVAIASN 911
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 7e-44
Identities = 36/329 (10%), Positives = 89/329 (27%), Gaps = 9/329 (2%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ H H L + L A +Y ++A P + V + L
Sbjct: 83 GHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHED--IVGVGKQWSGARALEALL 140
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
D + L++D G V + + + P A +
Sbjct: 141 TDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNG 200
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ ++ + + ++P +A + L + + + +A
Sbjct: 201 GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE-------TMQRLLPVLCQAH 253
Query: 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353
A+ + + + A P A + G + + + +
Sbjct: 254 GLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRL 313
Query: 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
+ A + P+ ++ + + ++ +A P A + G +
Sbjct: 314 LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 373
Query: 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
++ + Q + PD A +
Sbjct: 374 ALETVQRLLPVLCQAHGLTPDQVVAIASN 402
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-36
Identities = 32/338 (9%), Positives = 80/338 (23%), Gaps = 13/338 (3%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYH-KALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
Q + A + + G + E K S + A + +
Sbjct: 41 QPSDASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAA 100
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Y + P + AL P+ + +
Sbjct: 101 LGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVK 160
Query: 233 VIYKNRGDLESAIACYERCLAV-----SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
+ + A+ L +P +A + L + + +
Sbjct: 161 IAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALE-------TVQRLLP 213
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347
+A A+ + + + A P A + +
Sbjct: 214 VLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273
Query: 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
+ + + + A + P+ ++ + G + ++ +A P A +
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333
Query: 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ ++ + Q + PD A +
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 371
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 6e-35
Identities = 46/430 (10%), Positives = 105/430 (24%), Gaps = 48/430 (11%)
Query: 45 GFEGKDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLA 101
G ++ A+ ++ L + V A G Q +
Sbjct: 627 GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686
Query: 102 FDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161
+A L + A + + +A P + +
Sbjct: 687 LPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ-------VVAIA 739
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT------------ 209
G + Q + +A + P A + L
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 799
Query: 210 ---------------ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254
AL ++ + V + + A+ +R L V
Sbjct: 800 LAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPV 859
Query: 255 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 314
+ +A+ + + + + + A+ + G +
Sbjct: 860 LCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGG-KQALE 918
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
+ P A + + + + + + + PN ++ +
Sbjct: 919 TVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASN 978
Query: 375 GVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
G ++ + A + A+AA + A LG A+DA ++ L P
Sbjct: 979 GGKQALE-SIVAQLSRPDPALAALTNDHLVALACLGGRP--------AMDAVKKGLPHAP 1029
Query: 434 DSRNAGQNRL 443
+ R+
Sbjct: 1030 ELIRRVNRRI 1039
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 4e-62
Identities = 46/272 (16%), Positives = 90/272 (33%), Gaps = 15/272 (5%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALK----IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
L L+ + + + + L D A Y GV+Y L A + +A
Sbjct: 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
RP E + +G+ G+ ++A ++ L + P + A N IAL G
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG----- 125
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF---YELAFHFNPHCAE 335
+ + L +A ++ + V +E +
Sbjct: 126 --RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 183
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
LG I ++ +++ S+ + S++ LG Y G +D+A + + A+
Sbjct: 184 VEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
A N + + G + +Q
Sbjct: 243 ANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 2e-57
Identities = 43/277 (15%), Positives = 82/277 (29%), Gaps = 12/277 (4%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
++ + E L + D A +L + G G
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDER-------AQLLYERGVLYDSLGL 58
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+ +AL I P + LG+ ++ +D A ++ P Y A+ N G
Sbjct: 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ G + A PN + +A L K E +++K+
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK----QHFEKS 174
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
W + + LG E + H +E LG Y +LD
Sbjct: 175 DKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
A +++A++ + + ++ G+
Sbjct: 234 ATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLA 270
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 2e-54
Identities = 43/268 (16%), Positives = 88/268 (32%), Gaps = 15/268 (5%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA----ALERPMYAEAYCNMGVIYKNRGDLESAIA 246
L V +Q + L E+ AL A+ GV+Y + G A
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARN 64
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
+ + LA+ P+ N + I LT G + + + L + Y A N
Sbjct: 65 DFSQALAIRPDMPEVFNYLGIYLTQAG-------NFDAAYEAFDSVLELDPTYNYAHLNR 117
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA---VECYQMALSI 363
G+A + +A + +P+ L + + D + ++ +
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177
Query: 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423
+ ++ LG + Q M+ + +E LG Y G + A
Sbjct: 178 QWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 236
Query: 424 AYEQCLKIDPDSRNAGQNRLLAMNYINE 451
++ + + + + LL ++ + +
Sbjct: 237 LFKLAVANNVHNFVEHRYALLELSLLGQ 264
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 2e-46
Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 50/314 (15%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEK----DSGNVEAHIGKGICLQMQNMGRLAFDS 104
+ + A L+ + LA E +L D + +G+ + LA +
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARND 65
Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
FS+A+ + P + GI G A E++
Sbjct: 66 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS----------------------- 102
Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
L++DP Y A+ N G+ + A + P
Sbjct: 103 ------------------VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
+ + + + + A ++ S + N + L ++ + +E
Sbjct: 145 PFRSLWLYLAEQKLDEKQ-AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK-- 201
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
A H ++ + LG Y + D A ++LA N H +
Sbjct: 202 --ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLEL 259
Query: 345 KDRDNLDKAVECYQ 358
+
Sbjct: 260 SLLGQDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 7e-36
Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 6/200 (3%)
Query: 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320
+A+ L + E + + + A +Y GV Y + +A
Sbjct: 7 KSEVLAVPLQPTL---QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALAR 63
Query: 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380
+ A P E N LG+ N D A E + L + P ++ + N G+
Sbjct: 64 NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
G+ A + + +P L + + A + +Q + +
Sbjct: 124 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWN 182
Query: 441 NRLLAMNYINEGHDDKLFEA 460
+ I+E +
Sbjct: 183 IVEFYLGNISE--QTLMERL 200
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 7e-09
Identities = 11/92 (11%), Positives = 20/92 (21%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
Y + + A E + G A F AV
Sbjct: 183 IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
+ N H + + G+ + +
Sbjct: 243 ANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 1e-61
Identities = 41/261 (15%), Positives = 78/261 (29%), Gaps = 9/261 (3%)
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
A G + + Q+D A+ Y KA N +G+ E+AI+
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307
+ ++ + +G + + KK + Y +
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIG-------NAYHKLGDLKKTIEYYQKSLTE-HRTA 112
Query: 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
++ + + E + NP AE G Y + + AV+ Y + P
Sbjct: 113 DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
++ +N A KAI +P + AY + A++ +
Sbjct: 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232
Query: 428 CLKIDPDSRNAGQNRLLAMNY 448
D + N R + Y
Sbjct: 233 ARTKDAEVNNGSSAREIDQLY 253
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 185 bits (473), Expect = 1e-54
Identities = 38/298 (12%), Positives = 74/298 (24%), Gaps = 50/298 (16%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
A G + + EA E Y+KA
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT---------------------- 39
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
N E +Y+TA+ A + Y +
Sbjct: 40 --------------------YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ G+ + ++ + + A LT L + + + +
Sbjct: 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKL-------RNAEKELKKAEAE 131
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
Y N A+ G Y + A+ Y P A +N + +
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE 191
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
A+ A+ PNF ++ + +A E ++ A + + +
Sbjct: 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 4e-46
Identities = 36/255 (14%), Positives = 68/255 (26%), Gaps = 16/255 (6%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N +F +A+ Y E ++ + + A + ++AV+ +
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ + G K + A +LT L N +
Sbjct: 71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-LTEHRTADILTKLR-------NAE 122
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
++K ++P A G Y + A+ Y + P A Y N
Sbjct: 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAA 182
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
AIA + + PNF A A A + + + A
Sbjct: 183 LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV-------KEYASALETLDAART 235
Query: 295 YNWHYADAMYNLGVA 309
+ + +
Sbjct: 236 KDAEVNNGSSAREID 250
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 3e-41
Identities = 25/219 (11%), Positives = 57/219 (26%), Gaps = 8/219 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A + ++ A++ +E+ + + ++ +
Sbjct: 45 AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ H + + + +P A G +
Sbjct: 105 SLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEK-------AEEARLEGKEYFTKSDWP 156
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ ++ Y E +K P A Y N ++LM + A+ KA + P + AY
Sbjct: 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ SA+ + + I
Sbjct: 217 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 1e-28
Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 8/188 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ L + +E ++ H L ++P+
Sbjct: 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPE 137
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A G Y + A ++Y + + P A L L +
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-------SFP 190
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ I +A++ DP++ AY + +Y +AL + A + +
Sbjct: 191 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250
Query: 235 YKNRGDLE 242
+
Sbjct: 251 QLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
+ + G + + D A E KA + NN + G AI
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 425 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD 483
++ + R + + I + D K+ + Y + + T D
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIG-----NAYHKLGDL-KKTIEYYQKSLTEHRTAD 113
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 5e-60
Identities = 41/268 (15%), Positives = 76/268 (28%), Gaps = 21/268 (7%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG---CYEKAAL 219
L N + I+ + + + Y V Y EL +YD A Y
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
+ + G I +G AI Y+ + + + G
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG------ 122
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
+ + Y +K + Y LG AY ++ A + P+
Sbjct: 123 -NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW 181
Query: 340 LGVIYKDRDNLDK---AVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAA 388
+D K A Y+ + + K ++ + YT+ A
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAG 416
+ +A +PT +A + L +
Sbjct: 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 9e-57
Identities = 43/275 (15%), Positives = 74/275 (26%), Gaps = 21/275 (7%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA---CYE 249
+ + Y A+ + K ++ Y V Y + A Y
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
+ + L G + + Y+ A+ + D +G
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKG-------QDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369
+ F +AI + E + LG Y KA + L +KPN
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177
Query: 370 SLNNLGVVYTVQG---KMDAAAEMIEKAI--------AANPTYAEAYNNLGVLYRDAGSI 418
Q K A EK I EA + Y
Sbjct: 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
A A++ L +DP ++ A + + + + H
Sbjct: 238 VKADAAWKNILALDPTNKKAIDGLKMKLEHHHHHH 272
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 2e-53
Identities = 44/306 (14%), Positives = 86/306 (28%), Gaps = 40/306 (13%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA---AE 137
N + L N A + F++ + + + Y + + A E
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197
+Y ++A + + G L G IQ+Y A+ D Y +
Sbjct: 62 TYFSKVNATKAK-------SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI 114
Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
G + + A+ EK + + +G Y + A + + + L + PN
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 317
I A A K YY+K +
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAK----PYYEKLIEVCAPGGAK--------------- 215
Query: 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
+ EA + Y + KA ++ L++ P ++++ L +
Sbjct: 216 -----------YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264
Query: 378 YTVQGK 383
Sbjct: 265 LEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 1e-50
Identities = 31/224 (13%), Positives = 64/224 (28%), Gaps = 7/224 (3%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
M + + AI + + A N N A+ +L + DI
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
Y + + G + + +AI Y+ A + + +G
Sbjct: 61 ET----YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS 116
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
+ ++ N A++ + + + LG Y + A K + P
Sbjct: 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176
Query: 403 EAYNNLGVLYRDAGSIS---LAIDAYEQCLKIDPDSRNAGQNRL 443
Y + LA YE+ +++ ++ L
Sbjct: 177 IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDEL 220
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 3e-38
Identities = 37/233 (15%), Positives = 66/233 (28%), Gaps = 21/233 (9%)
Query: 55 ANILRSRNKFVDALA---LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
A K+ A Y + G L + LA + AV
Sbjct: 44 AVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
D + G + ++G A + K + + V +LG +
Sbjct: 104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-------PKVFYELGQAYYYNK 156
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---MQYDTALGCYEKA--------ALE 220
+ + L++ P+ Y + + A YEK A
Sbjct: 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ EA + Y D A A ++ LA+ P + A + + + L
Sbjct: 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 7e-21
Identities = 18/157 (11%), Positives = 41/157 (26%), Gaps = 4/157 (2%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ ++ F A+ E + + + + G A SF + ++L P
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 115 NACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAE-CLAIVLTDLGTSLKLA 170
+ + + A Y K + + L + +
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
+ + L +DP A L + +
Sbjct: 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 1e-59
Identities = 46/211 (21%), Positives = 76/211 (36%), Gaps = 5/211 (2%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
LGV L +YD AL +E+A E P EA + G + A+ + +
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66
Query: 253 AVSPNFEIAKNNMAIALTDLG----TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 308
A +P + ++ A L + + +G + Q ++ K A N YA G+
Sbjct: 67 ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126
Query: 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368
Y + + D A + A E + L +Y LD+A+ Y AL P
Sbjct: 127 VYALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185
Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
++GK + AA +
Sbjct: 186 DLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 7e-50
Identities = 44/222 (19%), Positives = 80/222 (36%), Gaps = 12/222 (5%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
+ + G+ L A F A+K +PQ+ A G + A E+
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63
Query: 141 KALSADPSYKPAAECLAIVLTDLG----TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196
++ P Y L+ L + G + + +A +++P YAP +
Sbjct: 64 TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123
Query: 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
G+VY+ L + D A ++ AL E + +Y + G L+ A+A Y + L +P
Sbjct: 124 RGLVYALLGERDKAEASLKQ-ALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182
Query: 257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
+ A AL G + +++ H
Sbjct: 183 KDLDLRVRYASALLLK-------GKAEEAARAAALEHHHHHH 217
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-37
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 11/146 (7%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
LGV + ++D A+ +E A NP EA L ++ A+E +
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 360 ALSIKPNFSQSLNNLGVVYT-----------VQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
++ P + L Y +G ++ A +++ A NP YA +
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPD 434
G++Y G A + +Q L ++
Sbjct: 125 GLVYALLGERDKAEASLKQALALEDT 150
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 4e-28
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 11/120 (9%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
+ LGV D A+ ++ AL P ++L L G ++ A E +
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISL-----------AIDAYEQCLKIDPDSRNAGQNR 442
+A P Y Y L Y + A+ + +++P R
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 6e-17
Identities = 18/78 (23%), Positives = 29/78 (37%)
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
Q+ LGV G+ DAA + E+A+ NP EA L G ++ A++
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 425 YEQCLKIDPDSRNAGQNR 442
+ + P
Sbjct: 62 GKTLVARTPRYLGGYMVL 79
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 204 bits (519), Expect = 6e-59
Identities = 62/406 (15%), Positives = 118/406 (29%), Gaps = 52/406 (12%)
Query: 54 YANILRSRNKFVDALALYEIVLE--------KDSGNVEAHIGKGICLQMQNMGRL--AFD 103
YA + + D + V + E +G + A
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159
Query: 104 SFSEAVKLDPQNACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
F +A++ P+N + I + A + +A+ +P + LA+ L
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
+ + +G + EAL+ P + Y + D A+ +KA
Sbjct: 220 HKMR---EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
P A +C +G Y+ + V E KL
Sbjct: 277 IPNNAYLHCQIGCCYRAKV------------FQVMNLRENGMYGKR----------KLLE 314
Query: 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC--- 337
I VA+ KKA N + L + +++ A +++ F
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374
Query: 338 NNLGVI-YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
G DKA+ + + I + D ++ + ++
Sbjct: 375 LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK----------DKLQKIAKMRLS 424
Query: 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
N +EA + L L + A + E+ L+ +A
Sbjct: 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 6e-54
Identities = 55/379 (14%), Positives = 115/379 (30%), Gaps = 43/379 (11%)
Query: 103 DSFSEAVKLDPQNACAHTHC--GILYKDEGRLVEAAESYHKALSADPSYKPAAE--CLAI 158
D + + A L +G+ A E KA +
Sbjct: 36 DKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLV 95
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY-NLGVVYSEL---------MQYD 208
+ G D + + ++ Y + E Q +
Sbjct: 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNE 155
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIY---KNRGDLESAIACYERCLAVSPNFEIAKNNM 265
A C+EKA ++P E + + N ++AI + + ++P+ + K +
Sbjct: 156 RAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL 215
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A+ L + + + +G ++AL D + + Y + D AI +
Sbjct: 216 ALKLHKMR---EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKK 272
Query: 326 AFHFNPHCAEACNNLGVIYKDR-------------------DNLDKAVECYQMALSIKPN 366
A + P+ A +G Y+ + + + AV + A N
Sbjct: 273 ALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN 332
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA---YNNLG-VLYRDAGSISLAI 422
+ + L ++ + + + A +K + T + G AI
Sbjct: 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392
Query: 423 DAYEQCLKIDPDSRNAGQN 441
+ + +KI+ SR +
Sbjct: 393 HHFIEGVKINQKSREKEKM 411
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 185 bits (470), Expect = 5e-52
Identities = 44/353 (12%), Positives = 100/353 (28%), Gaps = 52/353 (14%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGI---CLQMQNMGRLAFDSFSEA 108
+ + N+ A +E LEK N E G I L + A D +A
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201
Query: 109 VKLDPQNACAHTHCGI----LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
++L+P N + + ++ E + +AL P VL
Sbjct: 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV-------TDVLRSAA 254
Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM------------------- 205
+ I+ +AL+ P+ A + +G Y +
Sbjct: 255 KFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLE 314
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK--- 262
A+ +KA + ++ E A +++ + +
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322
++ + ++ + + N + + ++
Sbjct: 375 LRYGNFQLYQM------KCEDKAIHHFIEGVKINQKSREK-EKMKDKLQKI--------- 418
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
++ N +EA + L + + + + +A E + L + + G
Sbjct: 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 3e-43
Identities = 47/335 (14%), Positives = 90/335 (26%), Gaps = 52/335 (15%)
Query: 167 LKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------- 217
++ + D K + + A L + Q + AL C KA
Sbjct: 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84
Query: 218 --ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK--------NNMAI 267
+ N +Y + G L ++ V F
Sbjct: 85 HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFDMAIVFYE 324
G + ++KAL + L +A AI
Sbjct: 145 TRLKCGGN-----QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199
Query: 325 LAFHFNPHCAEACNNLGVIY----KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380
A NP L + ++ + + + + AL P + L + Y
Sbjct: 200 QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-------------------ISLA 421
+ + D A E+++KA+ P A + +G YR I A
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319
Query: 422 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
+ ++ + + + LA + ++
Sbjct: 320 VAHLKKADEANDNLFRVCSI--LASLHALADQYEE 352
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 6e-57
Identities = 71/373 (19%), Positives = 127/373 (34%), Gaps = 55/373 (14%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALS-ADPSYKPAAECLAIVLTDLGTSLKL 169
L ++ + + + G S+ S ++ CL L G L
Sbjct: 3 LGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLE--LALEGERLCN 60
Query: 170 AGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----- 220
AG+ + G+ + A++ + Y LG Y L Y+ A+ ++ L
Sbjct: 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD-LTLAKSM 119
Query: 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF----EIAK--NNMAIALTDL 272
R A++ N+G K G + A C ER L ++ + N+
Sbjct: 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179
Query: 273 G----------TKVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKF 316
G ++ + + V +Y++ L A NLG Y + F
Sbjct: 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF 239
Query: 317 DMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------K 364
AI ++ F A +NLG + + A E Y+ L++ +
Sbjct: 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTYAEAYNNLGVLYRDAGSI 418
+QS +LG YT+ + + A E + + A A +LG + G
Sbjct: 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGH 359
Query: 419 SLAIDAYEQCLKI 431
A+ EQ L++
Sbjct: 360 ERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 2e-50
Identities = 58/348 (16%), Positives = 109/348 (31%), Gaps = 63/348 (18%)
Query: 171 GNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---- 220
G+ G + + G + ++ A ++
Sbjct: 22 GSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAA-IQAGTE 80
Query: 221 -RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
+ Y +G Y GD A+ ++ L ++ + + A + +LG +K+
Sbjct: 81 DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN-DRLGEAKSSGNLGNTLKVM 139
Query: 280 GDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEM-----------------LKF 316
G ++ ++ L A+YNLG Y
Sbjct: 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199
Query: 317 DMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------K 364
A+ FY+ AC NLG Y + A+E +Q L I +
Sbjct: 200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTYAEAYNNLGVLYRDAGSI 418
++ +NLG + G+ + AAE ++ + A++ +LG Y
Sbjct: 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
+ AI+ + + L I ++ G A + L AH G
Sbjct: 320 NTAIEYHNRHLAI---AQELGDRIGEARACWS------LGNAHSAIGG 358
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 1e-18
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 17/147 (11%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYK-PAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181
G Y G A E + + L + AAE ++LG S G +D + Y
Sbjct: 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE--RRANSNLGNSHIFLGQFEDAAEHYK 287
Query: 182 EALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAY 228
L + A + Y+LG Y+ L +++TA+ + + L R A A
Sbjct: 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH-LAIAQELGDRIGEARAC 346
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVS 255
++G + G E A+ E+ L ++
Sbjct: 347 WSLGNAHSAIGGHERALKYAEQHLQLA 373
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 3e-53
Identities = 70/333 (21%), Positives = 114/333 (34%), Gaps = 55/333 (16%)
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQY 207
+A CL L G L +G+ + G+ + A+++ + Y LG Y L Y
Sbjct: 2 SASCLE--LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59
Query: 208 DTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS------ 255
AL + ++ A+A N+G K G+ + AI C +R L +S
Sbjct: 60 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119
Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY------YKKAL-YYN------------ 296
A N+ G G + G + A+ Y
Sbjct: 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR 179
Query: 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNL 350
A NLG + + F A++ +E F A +NLG Y
Sbjct: 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239
Query: 351 DKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAAN 398
+ A E Y+ L + + +QS +LG YT+ + A + K +
Sbjct: 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299
Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
A +LG Y G+ A+ E+ L+I
Sbjct: 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 2e-38
Identities = 49/283 (17%), Positives = 92/283 (32%), Gaps = 42/283 (14%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMYAEAYCNMGVIYKNRGDLESAI 245
G + + +E A ++ + Y +G Y D A+
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAA-VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL------YYNWHY 299
+ L ++ + A A +LG +K+ G+ ++ + ++ L
Sbjct: 64 EYHHHDLTLARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A A+YNLG Y K + R+ L AV+ Y+
Sbjct: 123 ARALYNLGNVYHAKGKSFGCPGPQ--------------DTGEFPEDVRNALQAAVDLYEE 168
Query: 360 ALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNN 407
LS+ + ++ NLG + + G A E+ + AY+N
Sbjct: 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228
Query: 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
LG Y G A + Y++ L + +R + A + +
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLL---ARQLKDRAVEAQSCYS 268
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 3e-36
Identities = 70/337 (20%), Positives = 114/337 (33%), Gaps = 63/337 (18%)
Query: 87 GKGICLQMQNMGRL---------AFDSFSEAVKLDPQN----ACAHTHCGILYKDEGRLV 133
G CL++ G F AV++ ++ + ++ G Y
Sbjct: 1 GSASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 60
Query: 134 EAAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---- 187
+A E +H L+ + + A +LG +LK+ GN + I L I
Sbjct: 61 KALEYHHHDLTLARTIGDQLG---EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117
Query: 188 --PHYAPAYYNLGVVYSEL--------------------MQYDTALGCYEKA------AL 219
A A YNLG VY A+ YE+
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
+R A+ N+G + G+ A+ +E+ L ++ F K A ++LG
Sbjct: 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFL 236
Query: 280 GDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------F 327
G+ YYKK L A + Y+LG Y + ++ AI ++
Sbjct: 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
AC +LG Y N D+A+ + L I
Sbjct: 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 4e-22
Identities = 54/261 (20%), Positives = 101/261 (38%), Gaps = 31/261 (11%)
Query: 51 ALSYANI---LRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
A + N+ L+ F +A+ + L+ ++ + +G+ L N+G +
Sbjct: 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALY--NLGNVYHA-- 135
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH-KALSADPSYKPAAECLAIVLTDLG 164
K G +D ++AA + + LS + A +LG
Sbjct: 136 ----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA-QGRAFGNLG 190
Query: 165 TSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA- 217
+ L GN +D + + + L I AY NLG Y L +++TA Y+K
Sbjct: 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250
Query: 218 -----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272
+R + A++ ++G Y D E AI + + LA++ + + A L
Sbjct: 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSL 309
Query: 273 GTKVKLEGDINQGVAYYKKAL 293
G G+ +Q + + +K L
Sbjct: 310 GNAYTALGNHDQAMHFAEKHL 330
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 1e-52
Identities = 38/227 (16%), Positives = 78/227 (34%), Gaps = 44/227 (19%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
D Y + G+ +++ +Y A+ E+ + ++G+ Y G ++
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
ER LA +P+ L
Sbjct: 64 LLERSLADAPD-----------------------------------------NVKVATVL 82
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
G+ Y ++ K+D+A+ NP LGV + D+A++ +++AL ++PN
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
+ + Y G+ + A +KA + + L ++ R
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE---LALVPR 186
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 1e-50
Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 7/183 (3%)
Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
++ + I+ G +Q V ++ + D +LG+AY +
Sbjct: 5 DIRQVYYRDKGISHAKAG-------RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA 57
Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
D E + P + LG+ Y D AV P LG
Sbjct: 58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117
Query: 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
V G+ D A + + A+ P + + + Y G A+ +++ ++D +
Sbjct: 118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177
Query: 436 RNA 438
Sbjct: 178 SVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 1e-46
Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 44/216 (20%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
G S AG + + D +LG+ Y + D E++ + P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
+ +G+ Y + A+ + +P
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------------------------- 108
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
+ + LGVA + +FD AI +++A P+ + +
Sbjct: 109 ----------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF 152
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
Y+ ++A+ ++ A + S L +V
Sbjct: 153 SYEQMGRHEEALPHFKKANELDEGASV---ELALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 9e-42
Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 7/179 (3%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
+ KGI A + D + H GI Y G + E ++
Sbjct: 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
L+ P V T LG + + + + +P + LGV
Sbjct: 69 LADAPDN-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
L ++D A+ ++ A RP + + + Y+ G E A+ +++ + +
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 2e-41
Identities = 29/145 (20%), Positives = 60/145 (41%)
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
+ G+++ + ++ A++ E + + + +LG+ Y +D+ E
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417
+ +L+ P+ + LG+ Y K D A ++ K ANP LGV + G
Sbjct: 66 ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125
Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNR 442
AID+++ L + P+ +
Sbjct: 126 FDEAIDSFKIALGLRPNEGKVHRAI 150
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 117 bits (297), Expect = 8e-31
Identities = 19/109 (17%), Positives = 40/109 (36%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
+ + G+ + +AV + +LG+ Y G +D E
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
++E+++A P + LG+ Y LA+ + + +P + N
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 76.7 bits (190), Expect = 2e-16
Identities = 27/105 (25%), Positives = 36/105 (34%), Gaps = 3/105 (2%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
K+ A+ L V E + N G+ L A DSF A+ L P
Sbjct: 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
H Y+ GR EA + KA D + LA+V
Sbjct: 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA---SVELALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 1e-06
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ + Y + G+ + AG S A+ EQ D + +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHL 48
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 4e-49
Identities = 38/226 (16%), Positives = 65/226 (28%), Gaps = 10/226 (4%)
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
+ L + Y Y A E A P A+ IY+ + A
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--YYNWHYADAMYN 305
+ + L++ P+ NN L + +AY+ KAL A N
Sbjct: 65 FRQALSIKPDSAEINNNYGWFLCG------RLNRPAESMAYFDKALADPTYPTPYIANLN 118
Query: 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
G+ + +F +A + + + P A L L A ++ S
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
Query: 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411
LG + + + A E + + VL
Sbjct: 179 VLQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 4e-48
Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 12/233 (5%)
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277
A + + + + Y D A A E L P E+A A L
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLK---- 56
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVA-YGEMLKFDMAIVFYE--LAFHFNPHCA 334
++ +++AL A+ N G G + + ++ +++ LA P
Sbjct: 57 ---VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY 113
Query: 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394
A N G+ + A + +L+ +P F + L + G++ A +K
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173
Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
+ LG ++ A ++ A AYE ++ + + + + +
Sbjct: 174 QSRVEVLQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTG 224
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 5e-38
Identities = 40/240 (16%), Positives = 80/240 (33%), Gaps = 19/240 (7%)
Query: 76 EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135
EK + + R A S +A+K DP+N A +Y+ +A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKL-AGNTQDGIQKYYEALK--IDPHYAP 192
ES+ +ALS P A + + G L + + + +AL P
Sbjct: 62 QESFRQALSIKPDS-------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI 114
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
A N G+ ++ Q+ A +++ +P + A+ + G L A +++
Sbjct: 115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
+ + + K+ + A Y+ ++ + V G+
Sbjct: 175 SRVEVLQADDLLLGW---------KIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTGQ 225
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 1e-33
Identities = 45/214 (21%), Positives = 74/214 (34%), Gaps = 8/214 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A + A A E L+ D N A + + Q + A +SF +A+ + P
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 115 NACAHTHCGI-LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+A + + G L R E+ + KAL ADP+Y + G G
Sbjct: 75 SAEINNNYGWFLCGRLNRPAESMAYFDKAL-ADPTYPTPYI----ANLNKGICSAKQGQF 129
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+L P + PA+ L Q A ++K + +G
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG- 188
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
+K L +A A YE + NF ++ +
Sbjct: 189 -WKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 6e-49
Identities = 69/373 (18%), Positives = 125/373 (33%), Gaps = 69/373 (18%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G G + A+ + L+ + + LG + + ++ ++
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72
Query: 183 ALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAYC 229
L + A A NLG L +D A+ C ++ L+ + A A
Sbjct: 73 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH-LDISRELNDKVGEARALY 131
Query: 230 NMGVIYKNRGD--------------------LESAIACYERCLAVSPNFEIAKNNMAIAL 269
N+G +Y +G L++A+ YE L++ + A
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-DRAAQGRAF 190
Query: 270 TDLGTKVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
+LG L G+ V +++ L A NLG AY + +F+ A +Y
Sbjct: 191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250
Query: 324 ELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSL 371
+ A++C +LG Y + +KA++ + L+I + ++
Sbjct: 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310
Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIA-------------ANPTYAEAYNNLGVLYRDAGSI 418
+LG YT G D A EK + A ++ LG+ Y SI
Sbjct: 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370
Query: 419 SLAIDAYEQCLKI 431
+ L
Sbjct: 371 MSENTEIDSSLNG 383
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 3e-32
Identities = 48/275 (17%), Positives = 83/275 (30%), Gaps = 50/275 (18%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
G GD + ++ +E + V ++ + LG
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE---DLKTLSAIYSQLGNAYFYL 60
Query: 280 GDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------F 327
D + + Y+ L A A NLG + FD AIV +
Sbjct: 61 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKA--------------------VECYQMALSI---- 363
+ A A NLG +Y + V+ Y+ LS+
Sbjct: 121 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180
Query: 364 --KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDA 415
+ ++ NLG + + G A E+ + AY+NLG Y
Sbjct: 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240
Query: 416 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
G A + Y++ L + +R + A + +
Sbjct: 241 GEFETASEYYKKTLLL---ARQLKDRAVEAQSCYS 272
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-28
Identities = 50/287 (17%), Positives = 89/287 (31%), Gaps = 64/287 (22%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMYAEAYCNMGVIYKNRGDLESAI 245
G + + +E A ++ + Y +G Y D A+
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAA-VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 67
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL------YYNWHY 299
+ L ++ + A A +LG +K+ G+ ++ + ++ L
Sbjct: 68 EYHHHDLTLARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A A+YNLG Y K ++ + RD L AV+ Y+
Sbjct: 127 ARALYNLGNVYHAKGKSFGCPGPQDVG--------------EFPEEVRDALQAAVDFYEE 172
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
LS+ A+ A+ NLG + G+
Sbjct: 173 NLSLV----------------------------TALGDRAAQGRAFGNLGNTHYLLGNFR 204
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
A+ A+EQ L I ++ G Y N G+ A+ G+
Sbjct: 205 DAVIAHEQRLLI---AKEFGDKAAERRAYSNLGN------AYIFLGE 242
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 6e-48
Identities = 56/136 (41%), Positives = 79/136 (58%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
AL + P +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 420 LAIDAYEQCLKIDPDS 435
AI+ Y++ L++DP S
Sbjct: 121 EAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 6e-40
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 7/142 (4%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
AEA+ N+G Y +GD + AI Y++ L + P A N+ A G D ++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG-------DYDE 53
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
+ YY+KAL + A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 345 KDRDNLDKAVECYQMALSIKPN 366
+ + D+A+E YQ AL + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 9e-34
Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG + G+ + I+ Y +AL++DP A A+YNLG Y + YD A+ Y+KA P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
AEA+ N+G Y +GD + AI Y++ L + P A N+ A GD
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-------GDY 119
Query: 283 NQGVAYYKKALYYN 296
++ + YY+KAL +
Sbjct: 120 DEAIEYYQKALELD 133
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 122 bits (310), Expect = 3e-33
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A A + G Y +G EA E Y KAL DP A +LG + G+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDE 53
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I+ Y +AL++DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 236 KNRGDLESAIACYERCLAVSPN 257
+GD + AI Y++ L + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 86.7 bits (216), Expect = 2e-20
Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 41/162 (25%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + +A+ Y+ LE D + EA G Q A + + +A++LDP++
Sbjct: 9 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A A + G Y +G EA E Y KAL
Sbjct: 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------------------- 97
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
+DP A A+YNLG Y + YD A+ Y+KA
Sbjct: 98 ----------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 76.3 bits (189), Expect = 8e-17
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 34/105 (32%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AEA NLG Y + + D+A+E YQ AL + P
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--------------------------- 33
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
AEA+ NLG Y G AI+ Y++ L++DP S A
Sbjct: 34 -------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 46.6 bits (112), Expect = 2e-06
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
AEA+ NLG Y G AI+ Y++ L++DP S A N
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 41
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 39.7 bits (94), Expect = 5e-04
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + + +A+ Y+ LE D + EA G Q A + + +A++LDP+
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Query: 115 N 115
+
Sbjct: 136 S 136
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 3e-47
Identities = 58/338 (17%), Positives = 107/338 (31%), Gaps = 26/338 (7%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECL------AIVLTDLGTSLKLAGNTQDGIQK---- 179
GR A+ +A + + L + + + + Q+ ++K
Sbjct: 31 GRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQ 90
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNR 238
E L A A G + Y A KA P EA+ +G +Y +
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE--GDINQGVAYYKKALYYN 296
GD+ SA C+ L N + N+++ L L T E + V K A+ +
Sbjct: 151 GDVTSAHTCFSGALTHCKNKV-SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209
Query: 297 WHYADAMYNLGVAYGEML--------KFDMAIVFYELAFHFN---PHCAEACNNLGVIYK 345
+ Y LG AY + A+ Y A + + N ++K
Sbjct: 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK 269
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
++ +A+E + A ++ P + + + ++ + E K
Sbjct: 270 YEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGS 329
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSR-NAGQNR 442
L + + L++ P S G N
Sbjct: 330 LRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNS 367
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 1e-44
Identities = 53/342 (15%), Positives = 110/342 (32%), Gaps = 28/342 (8%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKL 111
+ + + L E VL +A + KG L + A S+AVKL
Sbjct: 73 AGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL 132
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG--TSLKL 169
+P+ A G +Y +G + A + AL+ + + + L++VL L + +
Sbjct: 133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV-SLQNLSMVLRQLQTDSGDEH 191
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY--------SELMQYDTALGCYEKAA--- 218
+ + D +++ A+++D ++Y LG Y AL Y +A
Sbjct: 192 SRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
+ + + N ++K A+ + + A+ P + + L L
Sbjct: 252 RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL------ 305
Query: 279 EGDINQGVAYYKK------ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332
+ + K + G + + + P
Sbjct: 306 -SRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPG 364
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
LG + +K + + S P ++ + N+
Sbjct: 365 VNSGTVVLGKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNV 406
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 9e-42
Identities = 40/332 (12%), Positives = 91/332 (27%), Gaps = 39/332 (11%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-------QYDTALG 212
+ + +QK + + +Y+ V + + L
Sbjct: 30 MGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQ 89
Query: 213 CYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAKNNMAIALTD 271
E+ + A+A G D A + + + P A N +
Sbjct: 90 QMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK 149
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM---------LKFDMAIVF 322
GD+ + AL + + ++ NL + ++ ++
Sbjct: 150 K-------GDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201
Query: 323 YELAFHFNPHCAEACNNLGVIY--------KDRDNLDKAVECYQMALSIK---PNFSQSL 371
+LA + + LG Y ++ +A+ Y A + +
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261
Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
N ++ + A E +A A +P + E L ++ +++ K
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG---KT 318
Query: 432 DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 463
P + L + G + +
Sbjct: 319 KPKKLQSMLGSLRPAHLGPCGDGRYQSASGQK 350
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 4/184 (2%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLE---KDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107
Y N ++ AL+ Y + K S N + H+ + + + A + FS+
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
A LDP L + RL ES K L G
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK-TKPKKLQSMLGSLRPAHLGPCGDGR 342
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + Q + + P LG V L + + + P YA
Sbjct: 343 YQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTEEKVPFTFGLVDSDGPCYAVM 402
Query: 228 YCNM 231
N+
Sbjct: 403 VYNV 406
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 1e-41
Identities = 25/213 (11%), Positives = 63/213 (29%), Gaps = 26/213 (12%)
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283
+ G A++ + + +A++ +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY--------------------- 41
Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343
Y+ + + L +AY + +D A +FY+ P+ + +
Sbjct: 42 ----YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-DAAAEMIEKAIAANPTYA 402
R A+ Y+ L ++ + + LG Y + + E K +++
Sbjct: 98 QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ 157
Query: 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
A G+ A ++ ++ + P +
Sbjct: 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 5e-35
Identities = 29/239 (12%), Positives = 65/239 (27%), Gaps = 32/239 (13%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
Q+ + G+ +A + + ++ +
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM--------------------- 40
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+ K + L + Y + YD A Y++ + P +
Sbjct: 41 ----YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ RG + A+ YE+ L + + A + + + K L
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA------EQEKKKLETDYKKL 150
Query: 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A Y G++ +++ A + P EA L I + +++
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 4e-30
Identities = 31/175 (17%), Positives = 49/175 (28%), Gaps = 19/175 (10%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA----------------CNNLGV 342
D M A E + A+ ++ N E L +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
YK N DKA Y+ L PN L + +G+ A M EK +
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122
Query: 403 EAYNNLGVLYRDAG-SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
A LG Y ++ + L + A ++ + +K
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR--DGLSKLFTTRYEK 175
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-27
Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 23/207 (11%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK----------------GICLQMQ 95
L + + A++ + + + E + + +
Sbjct: 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67
Query: 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
A+ + E ++ P N C + G+ +A Y K L + A
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF 127
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
L K ++ Y+ L A Y G+ +Y+ A +
Sbjct: 128 LGNYYYLTAEQEKKK------LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQ 181
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLE 242
K L P EA + I + ++
Sbjct: 182 KVILRFP-STEAQKTLDKILRIEKEVN 207
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 3e-39
Identities = 53/316 (16%), Positives = 94/316 (29%), Gaps = 70/316 (22%)
Query: 177 IQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA--ALER- 221
+ ++ P +NL + Y+ +Y+ A+ ++A LE+
Sbjct: 1 MHHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60
Query: 222 -----PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIA 268
P A + ++Y+++ + A LA+ P NN+A+
Sbjct: 61 SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120
Query: 269 LTDLGTKVKLEGDINQGVAYYKKAL------YYNWH--YADAMYNLGVAYGEMLKFDMAI 320
G + K+AL H A + NL + K++
Sbjct: 121 YGKRG-------KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173
Query: 321 VFYELAF----------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------ 364
+Y+ A P+ A+ NNL Y + +A Y+ L+
Sbjct: 174 YYYQRALEIYQTKLGPDD--PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231
Query: 365 ---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDA 415
+ +GK E +PT NLG LYR
Sbjct: 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ 291
Query: 416 GSISLAIDAYEQCLKI 431
G A E ++
Sbjct: 292 GKFEAAETLEEAAMRS 307
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 57/320 (17%), Positives = 96/320 (30%), Gaps = 62/320 (19%)
Query: 125 LYKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183
++ Y + + P+ L +L G + + +A
Sbjct: 1 MHHHHHHSSGRENLYFQGGGYEIPA-------RLRTLHNLVIQYASQGRYEVAVPLCKQA 53
Query: 184 LKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALER-------PMYAEA 227
L+ P A L +VY + +Y A A A+ P A
Sbjct: 54 LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT 113
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIALTDLGTKVKLE 279
N+ V+Y RG + A +R L + P+ NN+A+ + G
Sbjct: 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG------ 167
Query: 280 GDINQGVAYYKKAL------YYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAF---- 327
+ YY++AL A NL Y + KF A Y+
Sbjct: 168 -KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226
Query: 328 -----HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGV 376
+ + + + + K P + +L NLG
Sbjct: 227 EREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA 286
Query: 377 VYTVQGKMDAAAEMIEKAIA 396
+Y QGK +AA + E A+
Sbjct: 287 LYRRQGKFEAAETLEEAAMR 306
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 55/289 (19%), Positives = 87/289 (30%), Gaps = 61/289 (21%)
Query: 123 GILYKDEGRLVEAAESYHKALSA--------DPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
I Y +GR A +AL P +A +L L + +
Sbjct: 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-------VATMLNILALVYRDQNKYK 86
Query: 175 DGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------AL- 219
D +AL I P A NL V+Y + +Y A ++A L
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146
Query: 220 -ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIALT 270
+ P A+ N+ ++ +N+G E Y+R L + PN KNN+A
Sbjct: 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206
Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNW---------HYADAMYNLGVAYGEMLKFDMAIV 321
G Q YK+ L + K
Sbjct: 207 KQG-------KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259
Query: 322 FYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
F E + P NLG +Y+ + + A + A+ +
Sbjct: 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-38
Identities = 49/118 (41%), Positives = 68/118 (57%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
AL + PN +++ NLG Y QG D A E +KA+ +P AEA NLG + G
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-34
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 41/166 (24%)
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
A++ AEA+ N+G Y +GD + AI Y++ L + PN
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------------------- 41
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
A+A YNLG AY + +D AI +Y+ A +P+ AEA
Sbjct: 42 ----------------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
NLG Y + + D+A+E YQ AL + PN +++ NLG QG
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-33
Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 186 IDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
I Y++ L + PN A N+ A GD ++ + YY+KAL + + A+A
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQ-------GDYDEAIEYYQKALELDPNNAEAKQ 115
Query: 305 NLGVAYGEM 313
NLG A +
Sbjct: 116 NLGNAKQKQ 124
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 122 bits (310), Expect = 2e-33
Identities = 45/109 (41%), Positives = 64/109 (58%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG D A E +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
A+ +P AEA+ NLG Y G AI+ Y++ L++DP++ A QN
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 9e-33
Identities = 42/111 (37%), Positives = 62/111 (55%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+KA P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
AEA+ N+G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 96.3 bits (241), Expect = 6e-24
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 41/159 (25%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
+ EA G Q A + + +A++LDP NA A + G Y +G EA E Y
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200
KAL +DP+ A A+YNLG
Sbjct: 68 KALE-----------------------------------------LDPNNAEAWYNLGNA 86
Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
Y + YD A+ Y+KA P AEA N+G + +G
Sbjct: 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 83.2 bits (207), Expect = 2e-19
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 362 SIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
++ P N +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 421 AIDAYEQCLKIDPDSRNA 438
AI+ Y++ L++DP++ A
Sbjct: 62 AIEYYQKALELDPNNAEA 79
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 70.9 bits (175), Expect = 5e-15
Identities = 36/151 (23%), Positives = 51/151 (33%), Gaps = 45/151 (29%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
N + + +A+ Y+ LE D N EA G G A + + +A++LDP
Sbjct: 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY--KQGDYDEAIEYYQKALELDP 74
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
NA A + G Y +G EA E Y KAL
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE----------------------------- 105
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
+DP+ A A NLG +
Sbjct: 106 ------------LDPNNAEAKQNLGNAKQKQ 124
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Length = 631 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 1e-37
Identities = 40/318 (12%), Positives = 98/318 (30%), Gaps = 28/318 (8%)
Query: 314 LKFDMAIVFYELAFHFNPHCAEACN-NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372
+ +A++F F H + N +LD + + S
Sbjct: 105 YQRWLALIFASSPFVNADHILQTYNREPNRKNSLEIHLDSSKSSLIKFCILYLPESNVNL 164
Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
NL V++ + A+ + A+N + + +Q ++
Sbjct: 165 NLDVMWNIS-PELCASLCFALQSPRFIGTSTAFNKRATILQWF------PRHLDQLKNLN 217
Query: 433 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN-----TKDPERP 487
+ + +Y + + A +R + S+Y D +P
Sbjct: 218 NIPSAISHDVYMHCSYDTSVNKHDVKRALNHVIRRH--IESEYGWKDRDVAHIGYRNNKP 275
Query: 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIW 547
+++ + + HS+ + + +++ ++ + D ++ +
Sbjct: 276 VMVVLLEHFHSAHSIYRTH-STSMIAAREHFYLIGLGSP-SVDQAGQEVFDE-------F 326
Query: 548 RDIYGIDEKKVAAMVR----EDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTT 603
+ G + K+ +R + I + + + AP+Q +G+P TT
Sbjct: 327 HLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATT 386
Query: 604 GLPTIDYRITDSLADPPE 621
I+Y I + E
Sbjct: 387 HSDFIEYVIVEDDYVGSE 404
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 5e-34
Identities = 48/288 (16%), Positives = 88/288 (30%), Gaps = 58/288 (20%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKA--ALER------PMYAEAYCNMGVIYKNRGDLESA 244
+ ++ S L+ +A+ ++A LE+ P A + ++Y+++ + A
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62
Query: 245 IACYERCLAVS--------PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--- 293
LA+ P NN+A+ G + K+AL
Sbjct: 63 AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-------KYKEAEPLCKRALEIR 115
Query: 294 ---YYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAF----------HFNPHCAEACN 338
+H A + NL + K + +Y A P+ A+ N
Sbjct: 116 EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD--PNVAKTKN 173
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIK---------PNFSQSLNNLGVVYTVQGKMDAAAE 389
NL Y + A Y+ L+ + + + K +A
Sbjct: 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233
Query: 390 MIEKAIA------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
E +PT +LG LYR G + A + +
Sbjct: 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 53/288 (18%), Positives = 90/288 (31%), Gaps = 62/288 (21%)
Query: 163 LGTSLKLA------GNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYD 208
+G+S + +AL+ P A L +VY + +Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 60
Query: 209 TALGCYEKAALER---------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS---- 255
A A L P A N+ V+Y RG + A +R L +
Sbjct: 61 EAAHLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119
Query: 256 ----PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--------HYADAM 303
P+ NN+A+ + G + YY++AL + A
Sbjct: 120 GKFHPDVAKQLNNLALLCQNQG-------KAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172
Query: 304 YNLGVAYGEMLKFDMAIVFYELAFHF---------NPHCAEACNNLGVIYKDRDNLDKAV 354
NL Y + K+ A Y+ N + + +D +
Sbjct: 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA 232
Query: 355 ECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
+ K P + +L +LG +Y QGK++AA + + A
Sbjct: 233 PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 9e-28
Identities = 49/290 (16%), Positives = 79/290 (27%), Gaps = 63/290 (21%)
Query: 123 GILYKDEGRLVEAAESYHKALSA--------DPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A +AL P A +L L + +
Sbjct: 8 HHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDV-------ATMLNILALVYRDQNKYK 60
Query: 175 DGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER----- 221
+ +AL I P A NL V+Y + +Y A ++A LE
Sbjct: 61 EAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA-LEIREKVL 119
Query: 222 ----PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIAL 269
P A+ N+ ++ +N+G E Y R L + PN KNN+A
Sbjct: 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNW---------HYADAMYNLGVAYGEMLKFDMAI 320
G YK+ L + K +
Sbjct: 180 LKQG-------KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA 232
Query: 321 VFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
+ E + P +LG +Y+ + L+ A A +
Sbjct: 233 PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-31
Identities = 46/317 (14%), Positives = 98/317 (30%), Gaps = 37/317 (11%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---------------ALER 221
+++ + ++ D Y + + ++ Y Y L
Sbjct: 38 VEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTG 97
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN----FEIAK--NNMAIALTDLGTK 275
+ + G+ ++ + AI Y P E A+ +A A +
Sbjct: 98 LLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT 157
Query: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHF 329
I Q + Y+ Y+ +++ + Y + +D A+ E A
Sbjct: 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGKM 384
+ A + N+ Y + AVE +Q A + + L L G+
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277
Query: 385 DAAAEMIEKAIA-----ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439
A + IE+ + ++ Y E + L +Y++ D K + +
Sbjct: 278 QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEA 337
Query: 440 QNRLLAMNYINEGHDDK 456
R A + + H ++
Sbjct: 338 CARSAAAVFESSCHFEQ 354
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 3e-31
Identities = 39/274 (14%), Positives = 84/274 (30%), Gaps = 25/274 (9%)
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
+ G+ D+ VEA Y +A P E A + +
Sbjct: 97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE-KAEFHFKVAEAYYHMK 155
Query: 172 NTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------A 218
T + +AL I + + + Y + YD AL E A
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
A + N+ Y GD + A+ +++ VS E + + L L +
Sbjct: 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR--EKVPDLLPKVLFGLSWTLCK 273
Query: 279 EGDINQGVAYYKKAL--------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
G + + ++ L + + + + K + ++E + +
Sbjct: 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE-KKNLH 332
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
+ + +++ + ++A Y+ L +
Sbjct: 333 AYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 2e-29
Identities = 32/286 (11%), Positives = 72/286 (25%), Gaps = 60/286 (20%)
Query: 171 GNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------- 217
+ I Y EA K D A ++ + Y + Q ++ +A
Sbjct: 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277
L ++ + Y + + A+ E L ++
Sbjct: 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA---------------------- 212
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF-----HFNPH 332
+ + A ++ N+ +Y MA+ ++ A
Sbjct: 213 -------------MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGKMDAA 387
+ L KA + + L + + L VY
Sbjct: 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319
Query: 388 AEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
+++ + + + ++ + A Y + LK
Sbjct: 320 HDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 7e-21
Identities = 45/318 (14%), Positives = 88/318 (27%), Gaps = 66/318 (20%)
Query: 206 QYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
A + E Y M ++ D Y V+ E
Sbjct: 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86
Query: 260 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319
+ + + + YY + G+ + ++ A
Sbjct: 87 TIE--------------TPQKKLTGLLKYY----SL--------FFRGMYEFDQKEYVEA 120
Query: 320 IVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPN 366
I +Y A AE + Y ++ AL I
Sbjct: 121 IGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDAGSISL 420
QSL + Y D A +E A+ + A + N+ Y +G +
Sbjct: 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLL---------------AMNYINEGHDDKLFEAHRDWG 465
A++ +++ K+ + ++L A +I EG D +H+ +
Sbjct: 241 AVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300
Query: 466 KRFMRLYSQYTSWDNTKD 483
+ F+ L + Y + +
Sbjct: 301 ELFLFLQAVYKETVDERK 318
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 2e-20
Identities = 33/297 (11%), Positives = 71/297 (23%), Gaps = 61/297 (20%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL----------- 100
+ ++V+A+ Y ++ V I K +
Sbjct: 105 FFRGMYEFDQKEYVEAIGYYREAEKE-LPFVSDDIEKAEFHF--KVAEAYYHMKQTHVSM 161
Query: 101 -----AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
A D + + + Y D +A AL
Sbjct: 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL------------ 209
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
+ ++ D A + N+ Y A+ ++
Sbjct: 210 -----------------------ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246
Query: 216 KA-----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN-NMAIAL 269
KA + + + G + A E L + + L
Sbjct: 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL 306
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
+ + E I+ ++Y++K + + + + F+ A FY
Sbjct: 307 QAVYKETVDERKIHDLLSYFEKKNLHA-YIEACARSAAAVFESSCHFEQAAAFYRKV 362
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 6e-31
Identities = 42/274 (15%), Positives = 85/274 (31%), Gaps = 24/274 (8%)
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
+ G+ D+ + A + + KA S K E A + S
Sbjct: 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE-KAEFFFKMSESYYYMK 157
Query: 172 NTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------A 218
T + +A +I + + + +L QY+ A+ ++KA
Sbjct: 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
+ + N+G+ ++ E AI ++R +AV ++ A +
Sbjct: 218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-ILPSLPQAYFLITQIHYK 276
Query: 279 EGDINQGVAYYKKAL-----YYNWHYADAMYNLGVAY---GEMLKFDMAIVFYELAFHFN 330
G I++ Y+ K + + Y L Y + F E
Sbjct: 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLY 335
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
+ ++ Y +R N KA + ++
Sbjct: 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 5e-28
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG D A E +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 394 AIAANPTYAEAYNNLGVLYRDAG 416
A+ +P AEA NLG + G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 8e-27
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 186 IDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLG 273
I Y++ L + PN AK N+ A G
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 97.9 bits (245), Expect = 6e-25
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 359 MALSIKPNFSQSLNNLGVVYTVQG 382
AL + PN +++ NLG QG
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 90.5 bits (226), Expect = 3e-22
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
A++ AEA+ N+G Y +GD + AI Y++ L + PN A N+ A G
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--- 57
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
+ I YY+KAL + + A+A NLG A +
Sbjct: 58 DYDEAI----EYYQKALELDPNNAEAKQNLGNAKQK 89
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 84.4 bits (210), Expect = 4e-20
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+KA P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 223 MYAEAYCNMGVIYKNRG 239
AEA N+G + +G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 83.6 bits (208), Expect = 6e-20
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 362 SIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
++ P N +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 421 AIDAYEQCLKIDPDSRNAGQNR 442
AI+ Y++ L++DP++ A QN
Sbjct: 62 AIEYYQKALELDPNNAEAKQNL 83
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 59.7 bits (146), Expect = 2e-11
Identities = 29/123 (23%), Positives = 39/123 (31%), Gaps = 41/123 (33%)
Query: 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
EA G Q A + + +A++LDP NA A + G Y +G EA E Y K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201
AL +DP+ A A NLG
Sbjct: 69 ALE-----------------------------------------LDPNNAEAKQNLGNAK 87
Query: 202 SEL 204
+
Sbjct: 88 QKQ 90
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 1e-05
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
N + + +A+ Y+ LE D N EA G G A + + +A++LDP
Sbjct: 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDP 74
Query: 114 QNACAHTHCGILYKDEG 130
NA A + G + +G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 7e-28
Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 41/199 (20%)
Query: 171 GNTQDGIQKYYEAL----KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
G + + AL + ++ +N+G +Y+ L A + ++ A
Sbjct: 13 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286
AY G++Y + AI + L NQ +
Sbjct: 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRG-------------------------NQLI 107
Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346
Y L + + +YN+ Y + ++ A LA
Sbjct: 108 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PR 155
Query: 347 RDNLDKAVECYQMALSIKP 365
+DKA+EC +P
Sbjct: 156 HSKIDKAMECVWKQKLYEP 174
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-26
Identities = 24/176 (13%), Positives = 63/176 (35%), Gaps = 21/176 (11%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A +++N GV + + A+ + + C N+G +Y N+ +A + +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----------------YAE 403
+++ + + + G++Y K D A + +++A+ E
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE 122
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 459
N+ +Y A + + + R++ ++ AM + + +
Sbjct: 123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK--AMECVWKQKLYEPVV 176
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 4e-21
Identities = 24/174 (13%), Positives = 61/174 (35%), Gaps = 26/174 (14%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ A + + G+L D+ A +++ ++G +
Sbjct: 1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRI----------CFNIGCMYTIL 50
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---------- 220
N + + + ++ D H A AY+ G++Y + +YD A+ ++A ++
Sbjct: 51 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110
Query: 221 ------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+ E N+ +Y + + + A ++ +K + A+
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 164
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 6e-21
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
A + N GV+ D+ + A++ + +++ S+ N+G +YT+ M A + +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
+I + A AY G+LY LAI ++ L ++ ++Y G
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ--------LIDYKILGL 114
Query: 454 DDKLFEAH 461
KLF
Sbjct: 115 QFKLFACE 122
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 4e-18
Identities = 28/200 (14%), Positives = 59/200 (29%), Gaps = 31/200 (15%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+A+S + + + AL + V + S G + A +F
Sbjct: 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAF 60
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA---------ECL 156
+ ++ D A A+ G+LY + A + +AL +
Sbjct: 61 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 120
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
VL ++ + ++ A + + D A+ C K
Sbjct: 121 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSK------------IDKAMECVWK 168
Query: 217 AALERPMYAEAYCNMGVIYK 236
L P+ +G +++
Sbjct: 169 QKLYEPV----VIPVGRLFR 184
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-26
Identities = 29/218 (13%), Positives = 65/218 (29%), Gaps = 42/218 (19%)
Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA------ALERPMYAEAYCNMG 232
+ L + A + LG VY+ + ++D A ++ + + A +G
Sbjct: 14 QAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVG 73
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
++ + G+ ++A C+ + + + ++ T GD+ Y+K+
Sbjct: 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133
Query: 293 LYYNWHYADAMY-NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351
L A A LG + + NL
Sbjct: 134 L--------VYAQQADDQVAI---------------------ACAFRGLGDLAQQEKNLL 164
Query: 352 KAVECYQMALSI------KPNFSQSLNNLGVVYTVQGK 383
+A + + A I ++ + L +
Sbjct: 165 EAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 9e-23
Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 22/170 (12%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 353
+ A + LG Y M +FD A ++ + A + +G++ + N D A
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 354 VECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPT 400
C+ + S + + V G + A + EK++
Sbjct: 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145
Query: 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
A A+ LG L + ++ A + + I + +
Sbjct: 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDI---FAELEDSEAVNELMTR 192
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 8e-20
Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 22/146 (15%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 387
+ A LG +Y D D+A +Q ++L+ +G+V + G DAA
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 388 AEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
+ + + + G ++ A YE+ L ++ A
Sbjct: 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY---AQQADD 142
Query: 441 NRLLAMNYINEGHDDKLFEAHRDWGK 466
+A + G + +
Sbjct: 143 QVAIACAFRGLG------DLAQQEKN 162
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-19
Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 15/181 (8%)
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+ + A G +Y R EA S+ L +G
Sbjct: 16 QALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA-EHRALHQVGM 74
Query: 166 SLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA- 217
++AGN + + E ++ + Y + V A YEK+
Sbjct: 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134
Query: 218 -----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272
A ++ A A+ +G + + +L A + R + E + +T L
Sbjct: 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE-DSEAVNELMTRL 193
Query: 273 G 273
Sbjct: 194 N 194
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 24/200 (12%), Positives = 57/200 (28%), Gaps = 44/200 (22%)
Query: 55 ANILRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
+ ++F +A A ++ + + + SG+ H + L +
Sbjct: 33 GYVYAFMDRFDEARASFQALQQQAQKSGD---HTAEHRAL--HQV--------------- 72
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
G++ + G A + + S + ++ T G+
Sbjct: 73 ----------GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD 122
Query: 173 TQDGIQKYYEALKI-----DPHY-APAYYNLGVVYSELMQYDTALGCYEKA------ALE 220
Q+Y ++L D A A+ LG + + A + +A +
Sbjct: 123 LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED 182
Query: 221 RPMYAEAYCNMGVIYKNRGD 240
E + + +
Sbjct: 183 SEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 9e-11
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 12/92 (13%)
Query: 352 KAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NP 399
+A + S + LG VY + D A + +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
A + +G++ R AG+ A + + ++
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEEREL 95
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
A + +A T + A LG +Y A +++ + ++ +G +
Sbjct: 11 AERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ---AQKSGDHTAEHR 67
Query: 447 NYINEGHDDKLFEAHRDWGK 466
G R G
Sbjct: 68 ALHQVG------MVERMAGN 81
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-26
Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 353
A NLG + + F A++ +E F A +NLG Y + A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 354 VECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTY 401
E Y+ L + + +QS +LG YT+ + A + K +
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
A +LG Y G+ A+ E+ L+I
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-25
Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 47/186 (25%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESA 244
A+ NLG + L + A+ +E+ ++ AY N+G Y G+ E+A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
Y++ L + + L A + Y
Sbjct: 69 SEYYKKTLLL-----------------------------------ARQLKDRAVEAQSCY 93
Query: 305 NLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+LG Y + ++ AI ++ AC +LG Y N D+A+ +
Sbjct: 94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153
Query: 359 MALSIK 364
L I
Sbjct: 154 KHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 3e-24
Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 47/189 (24%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
R A+ N+G + G+ A+ +E+ L ++
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA------------------------ 39
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHC 333
K A NLG AY + +F+ A +Y+
Sbjct: 40 -----------KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 387
A++C +LG Y + +KA++ + L+I + ++ +LG YT G D A
Sbjct: 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148
Query: 388 AEMIEKAIA 396
EK +
Sbjct: 149 MHFAEKHLE 157
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 1e-18
Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 15/153 (9%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A + G + G +A ++ + L + I ++LG + G +
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLGEFET 67
Query: 176 GIQKYYEALKID------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RP 222
+ Y + L + A + Y+LG Y+ L Y+ A+ + K L R
Sbjct: 68 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK-HLAIAQELKDRI 126
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255
A ++G Y G+ + A+ E+ L +S
Sbjct: 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 4e-26
Identities = 18/104 (17%), Positives = 38/104 (36%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ G++ ++ A + +E P EA +LG+ + + A+
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
A + P L V +T + +AA + + + P Y +
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 3e-22
Identities = 18/97 (18%), Positives = 37/97 (38%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
G S+ N + + + +P A+ +LG+ +E + A+ A + P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
+ + V + N + +A+A L P +E
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 1e-21
Identities = 17/101 (16%), Positives = 35/101 (34%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
E G+ NL +A ++ +P ++ +LG+ K A +
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
A +P + L V + + + + A+ + L P
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 1e-20
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 7/111 (6%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
G+ +L A +E + P EA+ ++G+ AI
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
+ P +A++ T+ E + N +A + L Y
Sbjct: 77 ARMLDPKDIAVHAALAVSHTN-------EHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 1e-20
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
G+ + AA E P EA+ +LG+ + LAI A +D
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 433 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 464
P LA+++ NE + + + R W
Sbjct: 82 PKDIAVHAA--LAVSHTNEHNANAALASLRAW 111
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 5e-19
Identities = 17/98 (17%), Positives = 36/98 (36%)
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
G + ++ + ++ +A +LG+ E K +AI+ A +P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369
L V + + N + A+ + L +P + Q
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-17
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G+ L EAA ++ +P + A LG + I
Sbjct: 24 GLSMLKLANLAEAALAFEAVCQKEPEREEA-------WRSLGLTQAENEKDGLAIIALNH 76
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
A +DP + L V ++ + AL L +P Y +
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-17
Identities = 20/104 (19%), Positives = 38/104 (36%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
++ + + +A +E V +K+ EA G+ LA + +
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
A LDP++ H + + +E A S L + P Y+
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 5e-14
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 7/111 (6%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
E + +G+ + A +F + +P+ A G+ + + A + +
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191
A DP L S N + L P Y
Sbjct: 76 HARMLDPKDIAV-------HAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 5e-26
Identities = 28/240 (11%), Positives = 69/240 (28%), Gaps = 13/240 (5%)
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
+ + Y + + E A + ++ + + L L D
Sbjct: 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK------D 147
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+++ + Y + ++ V + + F + + A +
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV------YTVQGKMDAAAEMIEKAI 395
+ ++ D ++ L + N V Y + ++ + + I
Sbjct: 208 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267
Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDD 455
P A+N L + +D G +S + Q L + P + L Y + +
Sbjct: 268 KLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQ 326
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 97.1 bits (241), Expect = 6e-22
Identities = 28/263 (10%), Positives = 71/263 (26%), Gaps = 19/263 (7%)
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
+ + + + + + + R A + A+ + + ++L L L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ ++ P +++ V+ L L + A
Sbjct: 149 HEE------MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
+ + + + ++ + ++ L N +++ + + V
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-GYNDRAVLEREVQ 261
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYK 345
Y + + H A L + P L IY+
Sbjct: 262 YTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 320
Query: 346 DR---------DNLDKAVECYQM 359
D D L+KA+E ++
Sbjct: 321 DMLENQCDNKEDILNKALELCEI 343
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 89.4 bits (221), Expect = 3e-19
Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 1/187 (0%)
Query: 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNL 350
+ Y+ + D + + A A N + V+ K + +L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
+ + + +P Q ++ V+ E I + + A+ +
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMR 470
+ ++ + +Q LK D + + R ++ +D + E + ++
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Query: 471 LYSQYTS 477
L S
Sbjct: 269 LVPHNES 275
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 5e-16
Identities = 19/192 (9%), Positives = 58/192 (30%), Gaps = 6/192 (3%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+ + ++E+ N + + + ++ + ++ + D +N A H +
Sbjct: 150 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
++ + + L D V+++ + +Q E +K
Sbjct: 210 IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-GYNDRAVLEREVQYTLEMIK 268
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI----YKNRGDL 241
+ PH A+ L + + + +P ++ Y ++
Sbjct: 269 LVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327
Query: 242 ESAIACYERCLA 253
++ + L
Sbjct: 328 DNKEDILNKALE 339
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 9e-25
Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 17/269 (6%)
Query: 171 GNTQDGIQKYYEALKIDPHYA-PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G+ Q I + P L Y +Y L + ++ +A
Sbjct: 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP---ELQAVR 69
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
+ ++ +A +R ++ S + L + + + + +
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVD-----VTNTTFLLMAASIYFYDQNPDAALR-- 122
Query: 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI--YKDR 347
+ + M ++ + D+A + + +
Sbjct: 123 ---TLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG 179
Query: 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
+ L A +Q LN + QG+ +AA ++++A+ + + E N
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 408 LGVLYRDAGSISLAIDAYEQCLK-IDPDS 435
L VL + G + Y LK
Sbjct: 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 2e-15
Identities = 29/263 (11%), Positives = 63/263 (23%), Gaps = 22/263 (8%)
Query: 206 QYDTALGCYEKAALERPMYA-EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
Y + ++ P E + Y + + + +
Sbjct: 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SSAP 63
Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL--GVAYGEMLKFDMAIVF 322
A+ + + VA + + + + + L Y D A+
Sbjct: 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
E I D LD A + + + + + V G
Sbjct: 124 LH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178
Query: 383 --KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
K+ A + ++ N + G A ++ L D
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238
Query: 441 NRLLAMNYINEGHDDKLFEAHRD 463
N L + + G ++ +
Sbjct: 239 N--LVVLSQHLGKPPEVTNRYLS 259
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 6e-13
Identities = 24/171 (14%), Positives = 40/171 (23%), Gaps = 14/171 (8%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L A+I AL ++E L + LA +
Sbjct: 105 LMAASIYFYDQNPDAALRTLH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159
Query: 112 DPQNACAHTHCGI--LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
D L +L +A + + ++L
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-------LLLLNGQAACHMA 212
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
G + EAL D + NL V+ L + Y +
Sbjct: 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 64.4 bits (156), Expect = 2e-11
Identities = 20/143 (13%), Positives = 38/143 (26%), Gaps = 10/143 (6%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAV 109
IL ++ A + + ++D + +L A+ F E
Sbjct: 134 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+ +GR A +AL D + L +L +
Sbjct: 194 DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-------PETLINLVVLSQH 246
Query: 170 AGNTQDGIQKYYEALK-IDPHYA 191
G + +Y LK +
Sbjct: 247 LGKPPEVTNRYLSQLKDAHRSHP 269
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 3e-10
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
A ++ ++ K DA +++ + +K S + G+ C Q A EA+
Sbjct: 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESY-HKALSADPSY 149
D + + +L + G+ E Y + A S+
Sbjct: 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 4e-24
Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 2/107 (1%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
E GV+ D N ++++ ++ A+ + P S+ G + + A +
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 390 MIEKAIA--ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
I + + + R + + E K++
Sbjct: 62 CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 5e-24
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 9/113 (7%)
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
+ YY GV+ + Y ++ +EKA P ++ + G N E A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 246 ACYERCLAVSPNFEIAK--NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
CY + V + A AL + E + +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIE---GKEVEA----EIAEARAKLE 106
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 2e-21
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 2/98 (2%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALER 221
G AGN + I + +A+++DP + + G L +Y+ A+ CY +
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 222 -PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
+ + + E E + +
Sbjct: 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 2e-21
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 2/107 (1%)
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
+ Y GV + + +I +E A +P ++ G + + ++AV+CY
Sbjct: 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63
Query: 358 QMALSIKPNFSQSL--NNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
+++ + + AE+ E +
Sbjct: 64 NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 1e-20
Identities = 13/148 (8%), Positives = 38/148 (25%), Gaps = 43/148 (29%)
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
E Y GV+ + G+ +I +E+ + + P
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------------------------ 38
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNN 339
+ G A + +++ A+ Y + + + +
Sbjct: 39 -----------------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNF 367
+ + + E + ++ +
Sbjct: 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 1e-15
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 43/139 (30%)
Query: 81 NVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138
N E + +G+ + G + D F +A++LDP+ + G + R EA +
Sbjct: 5 NPEEYYLEGVLQY--DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198
Y+ ++ + D + +
Sbjct: 63 YNYVIN---------------------------------------VIEDEYNKDVWAAKA 83
Query: 199 VVYSELMQYDTALGCYEKA 217
+ + E
Sbjct: 84 DALRYIEGKEVEAEIAEAR 102
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 6e-15
Identities = 14/76 (18%), Positives = 28/76 (36%)
Query: 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
+ + GV+ G + ++ EKAI +P ++ + G + A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 423 DAYEQCLKIDPDSRNA 438
D Y + + D N
Sbjct: 61 DCYNYVINVIEDEYNK 76
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 6e-13
Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKL- 111
+ + +++ L+E ++ D + + KG L N+ R A D ++ + +
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL--YNLERYEEAVDCYNYVINVI 70
Query: 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
D N + AE + +
Sbjct: 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 7e-06
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
E Y GVL DAG+ + +ID +E+ +++DP+ +
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMK 46
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 1e-04
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 55 ANILRSRNKFVDALALYE--IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
L + ++ +A+ Y I + +D N + K L+ + + KL+
Sbjct: 47 GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106
Query: 113 PQNA 116
+
Sbjct: 107 HHHH 110
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 49/266 (18%), Positives = 79/266 (29%), Gaps = 47/266 (17%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A Y V +KN LE A Y + N + A A G +K + +
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPE 94
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
V Y +KA Y E D A A A + G +
Sbjct: 95 AVQYIEKASVM--------------YVENGTPDTA--------------AMALDRAGKLM 126
Query: 345 KDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
+ D L KAV YQ A ++ ++ + + Q K D AA ++K +
Sbjct: 127 EPLD-LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185
Query: 399 ------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID--PDSRNAGQNRLLAMNYIN 450
PT + ++ A + I S + L +
Sbjct: 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLL-QAYD 244
Query: 451 EGHDDKLFEAHRDWGKRFMRLYSQYT 476
E +++L R + + Y
Sbjct: 245 EQDEEQLLRVCRS--PLVTYMDNDYA 268
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 6e-18
Identities = 51/294 (17%), Positives = 83/294 (28%), Gaps = 71/294 (24%)
Query: 130 GRLVEAAESYHKA--------LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181
++ EA E KA + P Y AA + K A + Y
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEY----AKAAVAFKNAKQLEQAKDAYL 60
Query: 182 EALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA-----LERPMYAEAYCN 230
+ + H A A+ G++ +L + A+ EKA+ P A +
Sbjct: 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
DL A+ Y++ AV N E
Sbjct: 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEE------------------------------- 149
Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIY 344
A+ + KFD A + P C + C ++
Sbjct: 150 ----RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205
Query: 345 KDRDNLDKAVECYQMALSIKPNFSQS-----LNNLGVVYTVQGKMDAAAEMIEK 393
R + A +C + + SI P FS S L +L Y + + +
Sbjct: 206 LHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQAYD-EQDEEQLLRVCRS 257
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 1e-16
Identities = 29/206 (14%), Positives = 63/206 (30%), Gaps = 17/206 (8%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+ +K+ +L +A ++Y + A + + A G LK + +Q +
Sbjct: 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHA-AKAFEQAGMMLKDLQRMPEAVQYIEK 101
Query: 183 ALKI-----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNM 231
A + P A + E + A+ Y++AA AE
Sbjct: 102 ASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161
Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
+ + + A A ++ ++ E D ++
Sbjct: 162 SRLLVRQQKFDEAAASLQKEKSMYKEME-NYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220
Query: 292 AL-YYNWHYAD---AMYNLGVAYGEM 313
+ + ++ A+ +L AY E
Sbjct: 221 SYSIPGFSGSEDCAALEDLLQAYDEQ 246
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 1e-22
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
Q ++ L + LG Y+E Q+D AL A P Y+ A+ +G
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 234 IYKNRGDLESAIACYERCLAVSPNF--EIAKNNMAIALTDLG 273
+ +GD A +E LA + + + + + L L
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 8e-22
Identities = 20/89 (22%), Positives = 34/89 (38%)
Query: 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409
+ E + L+ + LG Y + DAA + A+ +PTY+ A+ LG
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
+ G + A A+E L +
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 4e-20
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
E LG Y + + D A+ + AL P +S + LG
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 379 TVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 427
QG A + E +AA + + L V R A++ +
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR-EDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-17
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
+ L + LG Y E +FD A+ A F+P + A LG +
Sbjct: 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64
Query: 346 DRDNLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQGKMDAA 387
+ + A + ++ L+ + Q + L V + DA
Sbjct: 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDAL 108
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 3e-17
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 9/117 (7%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
E L+ ++ LG + + AL DP Y+ A
Sbjct: 3 AITERLEAMLAQGTDN-------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLESAIACY 248
+ LG A +E + + V + ++ +
Sbjct: 56 WKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-13
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
E +L + + N+ G A A+ DP + A G
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 126 YKDEGRLVEAAESYHKALSADPSY--KPAAECLAIVLTDLG 164
+ +G A +++ L+A S + + L + L L
Sbjct: 63 LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-13
Identities = 14/120 (11%), Positives = 33/120 (27%), Gaps = 9/120 (7%)
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
+++ E LA + + + + + + + + + AL ++ Y+
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHE-------QFDAALPHLRAALDFDPTYS 53
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQ 358
A LG A +E + L V + D +
Sbjct: 54 VAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 9e-12
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 2/73 (2%)
Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
M A E +E +A LG Y + A+ L DP A +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW-- 58
Query: 444 LAMNYINEGHDDK 456
L +G
Sbjct: 59 LGKTLQGQGDRAG 71
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 7e-04
Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 3/88 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+F AL L+ D A G LQ Q A ++ +
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85
Query: 115 NACAHTH--CGILYKDEGRLVEAAESYH 140
+ + R +A E +H
Sbjct: 86 RGDQQVVKELQVFLRRLARE-DALEHHH 112
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 1e-22
Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 4/132 (3%)
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
+ G + + +Y LG + K+D A ++ + + A LG
Sbjct: 2 SDG-GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA 60
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA---ANP 399
+ ++A++ Y + N + + + G +D A A A A P
Sbjct: 61 CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120
Query: 400 TYAEAYNNLGVL 411
+ G +
Sbjct: 121 AHEALAARAGAM 132
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 4e-22
Identities = 13/127 (10%), Positives = 29/127 (22%)
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
+ + E LG D A + +Q + ++ LG G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ A + + + + G + A + +
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126
Query: 443 LLAMNYI 449
A +
Sbjct: 127 ARAGAML 133
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 1e-21
Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 10/141 (7%)
Query: 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197
+ L LG + AG D + + +D + A + L
Sbjct: 6 TLAMLRGLSEDT-------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGL 58
Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
G L Y+ AL Y AL + + GDL+ A + + A++
Sbjct: 59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
Query: 258 ---FEIAKNNMAIALTDLGTK 275
E L + +
Sbjct: 119 QPAHEALAARAGAMLEAVTAR 139
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-17
Identities = 11/124 (8%), Positives = 31/124 (25%), Gaps = 7/124 (5%)
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
+S + + G + ++ + + A
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAG-------KWDDAQKIFQALCMLDHYDARYFLG 57
Query: 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
LG + ++ A+ Y + + + + +LD A + A ++
Sbjct: 58 LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 366 NFSQ 369
Sbjct: 118 AQPA 121
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 3e-15
Identities = 17/101 (16%), Positives = 32/101 (31%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
K+ DA +++ + D + +G G C Q + A S+S +D
Sbjct: 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
H + G L A ++ A + +
Sbjct: 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 5e-14
Identities = 18/142 (12%), Positives = 32/142 (22%), Gaps = 10/142 (7%)
Query: 69 ALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128
++ +E G A F LD +A G +
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64
Query: 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-- 186
G +A +SY D + G+ +Y A +
Sbjct: 65 LGLYEQALQSYSYGALMDINE-------PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 187 -DPHYAPAYYNLGVVYSELMQY 207
P + G + +
Sbjct: 118 AQPAHEALAARAGAMLEAVTAR 139
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 11/64 (17%), Positives = 13/64 (20%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L +S + AL Y D C A F A L
Sbjct: 56 LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
Query: 112 DPQN 115
Sbjct: 116 AAAQ 119
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 2e-21
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
A A +LG + + +KA Y A+ + P+ NN VY + K +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 390 MIEKAIAANP-------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
EKA+ A+A + G ++ +SLA+ + + L D
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 2e-19
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI DLG + + + Y +A+++DP Y N VY E ++ + EK
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 217 A-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
A + + A+A G ++ + DL A+ + R L+ + E+ K
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 3e-17
Identities = 20/107 (18%), Positives = 40/107 (37%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
A A +LG + ++ A Y+KA P Y N +Y +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
E+ + V +A A++ G + + D++ V ++ ++L
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 4e-16
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 2/123 (1%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
A A ++G + D E A Y++ + + P+ NN A + +
Sbjct: 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEAC 337
+ V ++ A AM G A+ + +A+ ++ L+ +P +
Sbjct: 63 QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122
Query: 338 NNL 340
L
Sbjct: 123 KEL 125
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 7e-12
Identities = 16/86 (18%), Positives = 37/86 (43%)
Query: 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421
+ + + + +LG Q + A +KAI +P+ YNN +Y + +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
Query: 422 IDAYEQCLKIDPDSRNAGQNRLLAMN 447
+ E+ +++ ++R + AM+
Sbjct: 62 VQFCEKAVEVGRETRADYKLIAKAMS 87
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 15/88 (17%), Positives = 38/88 (43%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A + +A++LDP N + + +Y +E + E + KA+ + + +A +
Sbjct: 27 AHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDP 188
+ G + + + +Q ++ +L
Sbjct: 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + F A Y+ +E D N+ + K + +AV++ +
Sbjct: 16 NAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75
Query: 116 -------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
A A + G ++ + L A + +H++LS + +
Sbjct: 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 6e-21
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
+P L + DN +A+ ++ + P++ + +LG +Y + D A +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 390 MIEKAIAANPTYAEAY--NNLGVLYRDAGSI 418
+ I + L A +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 4e-20
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
DP Y L + + AL +E+ P Y Y ++G +Y+ + AI
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 247 CYERCLAVSPNFEIAK--NNMAIALTDLG 273
Y + + V+ K + + A
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAE 91
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 4e-18
Identities = 16/74 (21%), Positives = 27/74 (36%)
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
P + L + A + E+ + +P Y Y +LG LY AID
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 425 YEQCLKIDPDSRNA 438
Y Q +++ +
Sbjct: 64 YAQGIEVAREEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 1e-17
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
Y L + + A+ +E +P +LG +Y+ D D A++ Y
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 359 MALSIKPNFS--QSLNNLGVVYTVQGKMD 385
+ + + L+ L ++
Sbjct: 66 QGIEVAREEGTQKDLSELQDAKLKAEGLE 94
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-15
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
L N + + E ++ DP Y YY+LG +Y L + D A+ Y +
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72
Query: 223 MYAEAY--CNMGVIYKNRGDLESAIACY 248
+ LE +
Sbjct: 73 EEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 4e-15
Identities = 10/107 (9%), Positives = 29/107 (27%), Gaps = 9/107 (8%)
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
+E P + + + A+A +E + P++ ++ L
Sbjct: 1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL------ 54
Query: 279 EGDINQGVAYYKKALYYNWHYADA--MYNLGVAYGEMLKFDMAIVFY 323
+ + Y + + + L A + + +
Sbjct: 55 -DRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 5e-10
Identities = 14/73 (19%), Positives = 25/73 (34%)
Query: 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136
+D + + A F E V+ DP + H G LY+ R +A
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 137 ESYHKALSADPSY 149
++Y + +
Sbjct: 62 DTYAQGIEVAREE 74
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
+P L + + S A+ +E+ ++ DPD + L Y D
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH--LGKLYERLDRTDD 59
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-05
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+D + A + ALAL+E ++E D V + G + + A D++
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64
Query: 106 SEAVKLDPQNACAHTH 121
++ +++ +
Sbjct: 65 AQGIEVAREEGTQKDL 80
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 4e-20
Identities = 16/148 (10%), Positives = 41/148 (27%)
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
G + G + + +Y+L + ++ A ++ + + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
LG + D A+ Y + + + G++ A + A
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
E + +I L + +
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEMKHE 148
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 7e-20
Identities = 20/145 (13%), Positives = 37/145 (25%), Gaps = 7/145 (4%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G L + L L + +G +D + +D +
Sbjct: 1 GPLGSGGGTIAMLNEISSDT-------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY 53
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ + LG + QYD A+ Y A+ + G+L A +
Sbjct: 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGT 274
+ N + L
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEA 138
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 6e-19
Identities = 13/142 (9%), Positives = 31/142 (21%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
+ + E +L + A +Q + S+ L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
G G+ D A + + G ++ A ++ +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 435 SRNAGQNRLLAMNYINEGHDDK 456
+ + + K
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKK 143
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 4e-17
Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 7/152 (4%)
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
G L S +S + ++A G ++ + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGX-------YEDAHXVFQALCVLDHY 53
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+ LG M ++D+AI Y + + L +A
Sbjct: 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390
+A + N + V ++ + EM
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEAIKLKKEM 145
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 2e-13
Identities = 20/96 (20%), Positives = 30/96 (31%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S A + DA +++ + D + +G G C Q LA S+S +D
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
H G L EA A +
Sbjct: 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 9e-12
Identities = 16/127 (12%), Positives = 28/127 (22%), Gaps = 7/127 (5%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122
++ E S +E A F LD ++
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G + G+ A SY D L G + +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRF-------PFHAAECLLQXGELAEAESGLFL 114
Query: 183 ALKIDPH 189
A ++ +
Sbjct: 115 AQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 5e-04
Identities = 7/57 (12%), Positives = 15/57 (26%)
Query: 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
G + + I + E +L +G A ++ +D
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 5e-20
Identities = 52/241 (21%), Positives = 84/241 (34%), Gaps = 31/241 (12%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLESAI 245
LG + + A +EKA + N+GV+Y +G +L+ A
Sbjct: 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAA 62
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
+ Y + A N+ + + G V + N+ + YY KA YA+ +
Sbjct: 63 SFYAK--ACDLNYSNGCHLLGNLYYS-GQGVSQ--NTNKALQYYSKACDLK--YAEGCAS 115
Query: 306 LGVAY--GEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECY 357
LG Y G+++ F A+ ++ A N + C LG +Y +L KA+ Y
Sbjct: 116 LGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASY 173
Query: 358 QMALSIKPNFSQSLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
A S N G +Y A KA NLG +
Sbjct: 174 DKA--CDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQY 229
Query: 414 D 414
+
Sbjct: 230 N 230
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 4e-18
Identities = 53/261 (20%), Positives = 86/261 (32%), Gaps = 42/261 (16%)
Query: 178 QKYYEALKI-----DPHYAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALERPMYAEAY 228
+ + +A K D +NLGV+Y + + + A Y KA Y+
Sbjct: 20 KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77
Query: 229 CNMGVIYKN-RG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
+G +Y + +G + A+ Y + A + ++ D G V D +
Sbjct: 78 HLLGNLYYSGQGVSQNTNKALQYYSK--ACDLKYAEGCASLGGIYHD-GKVV--TRDFKK 132
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEML----KFDMAIVFYELAFHFNPHCAEACNNL 340
V Y+ KA N D LG Y A+ Y+ A + C N
Sbjct: 133 AVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNA 188
Query: 341 GVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----MDAAAEMI 391
G +Y + N +A+ Y A + NLG + G+ A E
Sbjct: 189 GNMYHHGEGATKNFKEALARYSKA--CELENGGGCFNLGAMQ-YNGEGVTRNEKQAIENF 245
Query: 392 EKAIAANPTYAEAYNNLGVLY 412
+K A + L L
Sbjct: 246 KKGCKLG--AKGACDILKQLK 264
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 3e-10
Identities = 60/293 (20%), Positives = 99/293 (33%), Gaps = 58/293 (19%)
Query: 80 GNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV----- 133
+ + +G G + ++ + A F +A L + G+LY +G+ V
Sbjct: 4 QDPKELVGLGAKSYKEKDFTQ-AKKYFEKACDLK--ENSGCFNLGVLY-YQGQGVEKNLK 59
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-----DP 188
+AA Y KA D +Y L L G G +Q+ +AL+ D
Sbjct: 60 KAASFYAKA--CDLNYSNGCHLLG-NLYYSGQ-----GVSQN----TNKALQYYSKACDL 107
Query: 189 HYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---D 240
YA +LG +Y + + A+ + KA + +G +Y RG D
Sbjct: 108 KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD 165
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
L+ A+A Y++ A N G + + +A Y KA
Sbjct: 166 LKKALASYDK--ACDLKDSPGCFNAGNMYHH-GEGA--TKNFKEALARYSKACELE--NG 218
Query: 301 DAMYNLGVAY----GEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYK 345
+NLG G AI ++ C AC+ L +
Sbjct: 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKG------CKLGAKGACDILKQLKI 265
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 5e-20
Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 3/135 (2%)
Query: 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368
+ + + + NP +E LG Y +++ ++ Y+ AL ++ +
Sbjct: 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78
Query: 369 QSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
+ L V Q MI+KA+A + A L + + AI+ +
Sbjct: 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138
Query: 426 EQCLKIDPDSRNAGQ 440
++ + ++ N Q
Sbjct: 139 QKVMDLNSPRINRTQ 153
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 2e-16
Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 4/153 (2%)
Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
P ++ + D + + + + + + N ++ LG Y
Sbjct: 1 PKWQAVRAEYQ-RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59
Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIY---KDRDNLDKAVECYQMALSIKPNFSQSLN 372
+ +++ Y A AE L + + + AL++ N +L
Sbjct: 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119
Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
L +Q A E+ +K + N
Sbjct: 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 6e-15
Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 11/150 (7%)
Query: 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
P ++ A D N + +Q + ++ +P + + LG Y
Sbjct: 1 PKWQ-AVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIY---KNRGDLESAIACYERCLAVSPNFEIAKN 263
Y +L Y +A R AE Y + + ++ A ++ LA+ N A
Sbjct: 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+A + Q + ++K +
Sbjct: 120 LLASDAFMQ-------ANYAQAIELWQKVM 142
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 7e-15
Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 11/140 (7%)
Query: 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
QN + + ++ +PQN+ G Y + + +Y +AL
Sbjct: 21 ASQQNPEAQL-QALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 152 AAECLAIVLTDLGTSLKLAGN---TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
L T L + T +AL +D + A L Y
Sbjct: 80 L-------YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132
Query: 209 TALGCYEKAALERPMYAEAY 228
A+ ++K
Sbjct: 133 QAIELWQKVMDLNSPRINRT 152
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 1e-13
Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 8/126 (6%)
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
+ + N + ++ Q + P S+ LG Y Q + +A+ AE
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 404 AYNNLG-VLYRDAGSISL--AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460
Y L VLY A ++ L +D + A LLA + + + +A
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA--LMLLASDAFMQANYA---QA 134
Query: 461 HRDWGK 466
W K
Sbjct: 135 IELWQK 140
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-12
Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 10/135 (7%)
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
+ + ++ + A+P + LG + + + Y +AL+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQ 72
Query: 186 IDPHYAPAYYNLGVVYSELMQY---DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
+ A Y L V +KA A + + +
Sbjct: 73 LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132
Query: 243 SAIACYERCLAVSPN 257
AI +++ + ++
Sbjct: 133 QAIELWQKVMDLNSP 147
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-09
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 3/103 (2%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL---AFDSFSEAVKL 111
+N + ++L Y L+ N E + L Q + +A+ L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
D A + +A E + K + + +
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 4e-09
Identities = 18/87 (20%), Positives = 33/87 (37%)
Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428
Q + + Q +A + ++ I ANP +E + LG Y S ++ AY Q
Sbjct: 11 QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70
Query: 429 LKIDPDSRNAGQNRLLAMNYINEGHDD 455
L++ ++ + Y H
Sbjct: 71 LQLRGENAELYAALATVLYYQASQHMT 97
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 6e-20
Identities = 30/122 (24%), Positives = 52/122 (42%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
+ AE G +N + AV Y A+ + P + N Y+ G A +
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449
E+AI +P Y++AY +G+ A+ Y++ L++DPD+ N +A +
Sbjct: 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127
Query: 450 NE 451
E
Sbjct: 128 RE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 8e-20
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
N + + Y +A++++P A + N YS+L Y A+ E+A P Y++AY
Sbjct: 25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
MG+ + A+A Y++ L + P+ E K+N+ IA L
Sbjct: 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-17
Identities = 27/115 (23%), Positives = 47/115 (40%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
A+ + G ++ F+ A+ FY A NP A N Y N AV+ +
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
A+ I P +S++ +G+ + K A +KA+ +P +NL +
Sbjct: 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 6e-17
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241
+ D A G ++ ++ A+ Y KA P A +CN Y G+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
A+ ER + + P + A M +AL+ L + VAYYKKAL +
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLN-------KHVEAVAYYKKALELDPDNET 115
Query: 302 AMYNLGVAYGEM 313
NL +A ++
Sbjct: 116 YKSNLKIAELKL 127
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 6e-15
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
E AE G + E+A+ Y + + ++P + N A A + L
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL------- 59
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
G+ V ++A+ + Y+ A +G+A + K A+ +Y+ A +P +N
Sbjct: 60 GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119
Query: 340 LGVIYK 345
L +
Sbjct: 120 LKIAEL 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 5e-14
Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 7/134 (5%)
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+ D A G A Y KA+ +P+ A+ + +
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAA 55
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
GN +Q A+ IDP Y+ AY +G+ S L ++ A+ Y+KA P
Sbjct: 56 YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115
Query: 227 AYCNMGVIYKNRGD 240
N+ + +
Sbjct: 116 YKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-09
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
++ L G +AA KAI NP A + N Y G+ + A+
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66
Query: 423 DAYEQCLKIDPD 434
E+ + IDP
Sbjct: 67 QDCERAICIDPA 78
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 3e-09
Identities = 24/111 (21%), Positives = 36/111 (32%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N F A+ Y +E + N + A A+ +DP
Sbjct: 20 NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+ A+ G+ + VEA Y KAL DP + L I L +
Sbjct: 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 2e-19
Identities = 11/122 (9%), Positives = 38/122 (31%)
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
+ + + + ++ +++A ++ + L +Y ++
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ AA++ A A + G + A + +E ++ D + + +
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQ 144
Query: 443 LL 444
Sbjct: 145 SY 146
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 1e-18
Identities = 19/113 (16%), Positives = 40/113 (35%)
Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346
A K D +Y+ + + + A VF+ ++ + + L IY+
Sbjct: 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82
Query: 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
++ +A + Y +A ++ N + + G A E E I +
Sbjct: 83 KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 7e-18
Identities = 15/136 (11%), Positives = 36/136 (26%), Gaps = 3/136 (2%)
Query: 134 EAAESYHKALSADPSYKPAAEC---LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190
+ + A+++ + K + + G ++ + D +
Sbjct: 10 SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
L +Y Q+ A Y A + G A C+E
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129
Query: 251 CLAVSPNFEIAKNNMA 266
+ S + ++ +
Sbjct: 130 VIQHSNDEKLKIKAQS 145
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 1e-16
Identities = 10/114 (8%), Positives = 28/114 (24%), Gaps = 7/114 (6%)
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
+ I Y+ + + + A + + + + IY+ +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ A Y A+ N + L + ++ +
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL-------KAPLKAKECFELVI 131
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 1e-14
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 1/108 (0%)
Query: 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 318
I + M + +G I + +++ Y+++ D + L Y +F
Sbjct: 30 AIPDDMMD-DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQ 88
Query: 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
A Y +AF + + G KA EC+++ + +
Sbjct: 89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 8e-14
Identities = 17/95 (17%), Positives = 35/95 (36%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
SYA ++ + +A + + D NV+ +G Q++ + A D ++ A L
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
+ H G ++A E + +
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 2e-12
Identities = 8/81 (9%), Positives = 24/81 (29%)
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ +I + + + + +G+++ A + + L +Y+
Sbjct: 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82
Query: 415 AGSISLAIDAYEQCLKIDPDS 435
A D Y + +
Sbjct: 83 KEQFQQAADLYAVAFALGKND 103
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 4e-11
Identities = 16/168 (9%), Positives = 38/168 (22%), Gaps = 41/168 (24%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
+ +I + +++ A + + ++ + A F
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
D N +Y+ + + +AA+ Y
Sbjct: 64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV---------------------------- 95
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
A + + ++ G L A C+E
Sbjct: 96 -------------AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 10/65 (15%), Positives = 19/65 (29%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
+ A I + + +F A LY + + G C A + F ++
Sbjct: 74 MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133
Query: 112 DPQNA 116
Sbjct: 134 SNDEK 138
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 3e-18
Identities = 42/333 (12%), Positives = 84/333 (25%), Gaps = 55/333 (16%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+ ++G EA AL P + +A + LG L G + +
Sbjct: 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA--TSVLGEVLHCKGELTRSLALMQQ 78
Query: 183 ALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA--------ALERPMYAEAY 228
++ + + + TA EKA + PM+
Sbjct: 79 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
+ L+ A A + V +++ L L GD++ +
Sbjct: 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ--QQLQCLAMLIQCSLARGDLDNARSQ 196
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
+ + +H + A + ++
Sbjct: 197 LNRLEN--------------------------LLGNGKYHS-DWISNANKVRVIYWQMTG 229
Query: 349 NLDKAVECYQMAL----SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------N 398
+ A + + N+ + G+ + A ++E+
Sbjct: 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 289
Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
L LY AG S A LK+
Sbjct: 290 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 3e-16
Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 33/290 (11%)
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
K E M+AE + N G+ + A + L P + +A + LG
Sbjct: 5 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEV 62
Query: 276 VKLEGDINQGVAYYKKALYY-----NWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAF-- 327
+ +G++ + +A ++ WHY ++ A E AF
Sbjct: 63 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122
Query: 328 ------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS-----LNNLGV 376
P + LD+A + + + ++ L L
Sbjct: 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182
Query: 377 VYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
+G +D A + + + + A + ++ G + A +
Sbjct: 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242
Query: 430 KIDPDSR--NAGQNRLLAMNYINEGHDDK---LFEAHRDWGKRFMRLYSQ 474
K + + GQ R +A I G + + E + + +
Sbjct: 243 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 41/337 (12%), Positives = 85/337 (25%), Gaps = 63/337 (18%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGN-----VEAHIGKGICLQMQNMGRL--AFDSFSE 107
A + + +A L ++ LE+ + A G L + G L + +
Sbjct: 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK--GELTRSLALMQQ 78
Query: 108 AVKL------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161
++ + + +G L A E+ KA ++
Sbjct: 79 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA-------------FQLINE 125
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---- 217
L P + + + D A
Sbjct: 126 QHLEQL--------------------PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165
Query: 218 -ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
+ + + + RGDL++A + R + N + + ++ A
Sbjct: 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225
Query: 277 KLEGDINQGVAYYKKALY----YNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------ 326
++ GD + + N N+ A + +F+ A + E
Sbjct: 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 285
Query: 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
L +Y A AL +
Sbjct: 286 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 8e-09
Identities = 23/225 (10%), Positives = 55/225 (24%), Gaps = 23/225 (10%)
Query: 52 LSYANILRSRNKFVDALALYEIVLE--------KDSGNVEAHIGKGICLQMQNMGRLAFD 103
+ + IL ++ A E + + + + L A
Sbjct: 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156
Query: 104 SFSEAVKL-----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
S +++ Q G L A ++ + + K ++ ++
Sbjct: 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQYDTALGCY 214
++ G+ K + + N+ L +++ A
Sbjct: 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 276
Query: 215 EKA-----ALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLA 253
E+ +L + +Y G A L
Sbjct: 277 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 9e-18
Identities = 46/246 (18%), Positives = 80/246 (32%), Gaps = 37/246 (15%)
Query: 190 YAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DL 241
+ LG +YS + + + Y K+A ++ +Y G D
Sbjct: 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDY 239
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIA-LTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
+ + + + IA+ + L + + + +Y+K+ +
Sbjct: 240 TQSRVLFSQ--SAEQGNSIAQFRLGYILEQGLAGAK----EPLKALEWYRKS--AEQGNS 291
Query: 301 DAMYNLGVAYGEMLK-----FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDK 352
D Y L Y + + + AI +Y + A A NLG IY K
Sbjct: 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKK 349
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
AVE ++ A + NLG V+ AA + KA + A L
Sbjct: 350 AVEWFRKA--AAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQL 405
Query: 409 GVLYRD 414
G +Y
Sbjct: 406 GEIYYY 411
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 8e-17
Identities = 62/346 (17%), Positives = 105/346 (30%), Gaps = 59/346 (17%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
+ + + A A G Y +G + +A+ ++ AAE
Sbjct: 26 NLEQLKQKAESG--EAKAQLELGYRY-FQGNETT--KDLTQAMD---WFRRAAE-----Q 72
Query: 161 TDLGTSLKLAGNTQDGI---QKYYEALKI-----DPHYAPAYYNLGVVYSE----LMQYD 208
L +G Q Y +A+ A NLGV+Y E +
Sbjct: 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLESAIACYERCLAVSPNFEIAKNN 264
++ + AA + +MG Y G D A Y + A + N
Sbjct: 133 ESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK--AAEQGNVWSCNQ 188
Query: 265 MAIALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFD--MA 319
+ + LG + + +Y+K+ +L Y G + D +
Sbjct: 189 LGYMYSRGLGVER----NDAISAQWYRKS--ATSGDELGQLHLADMYYFGIGVTQDYTQS 242
Query: 320 IVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLG 375
V + + + A LG I + KA+E Y+ + + S L
Sbjct: 243 RVLFSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKS--AEQGNSDGQYYLA 298
Query: 376 VVYT-----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
+Y V + A K+ A A NLG +Y G
Sbjct: 299 HLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLG 342
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 32/191 (16%)
Query: 190 YAPAYYNLGVVYSELMQ-----YDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DL 241
+ Y L +Y + + + A+ Y K+A + A A N+G IY G +
Sbjct: 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEH 347
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYA 300
+ A+ + + A + + A+ N+ AL G K D Q + +KA +
Sbjct: 348 KKAVEWFRK--AAAKGEKAAQFNLGNALLQGKGVKK----DEQQAAIWMRKAAEQG--LS 399
Query: 301 DAMYNLGVAY--GEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKDR-------DN 349
A LG Y G ++ D A +++ A + I + +
Sbjct: 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM--NLFGTENRNITEKKLTAKQLQQA 457
Query: 350 LDKAVECYQMA 360
+ + +
Sbjct: 458 ELLSQQYIEKY 468
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 20/165 (12%)
Query: 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFDM- 318
K+ +A+ LT L V L N + K+ A A LG Y G D+
Sbjct: 3 KSLLAVMLTGLFALVSLPALGNVNLEQLKQKAESG--EAKAQLELGYRYFQGNETTKDLT 60
Query: 319 -AIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNN 373
A+ ++ A A LG+ Y + + + +AV Y+ A Q+ N
Sbjct: 61 QAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA--ALKGLPQAQQN 116
Query: 374 LGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
LGV+Y V+ + + A ++G Y +
Sbjct: 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFE 159
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 1e-17
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 4/103 (3%)
Query: 171 GNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
G + Y +A+ A Y LG + L +Y A + P +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIAL 269
++ N G E + + +A + + E I AI
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 7e-17
Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 350 LDKAVECYQMALSIK---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
+AV Y+ A++ + ++ LG + G+ A ++ + P +
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
++ + G ++ + + D
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-15
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 206 QYDTALGCYEKA---ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
A+ YEKA L+ AE Y +G ++ G+ A A + PN + +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 263 NNMAIALTDLG---------TKVKLEGDINQGVAYYKKALYYNWHYADA 302
A+ L +LG K+ E ++ + YK+A+ + YAD
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF---YADK 110
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 7e-14
Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 14/118 (11%)
Query: 315 KFDMAIVFYELAFHFN---PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371
A+ +YE A AE LG ++ KA + PN
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
+V G+ + E++ K IA + Y+ AI Y L
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS-----YK------QAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 7e-13
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 280 GDINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
G Q V YY+KA+ A+ LG + + ++ A P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
++ + ++ VE ++ +
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 7e-12
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 15/123 (12%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G +A Y KA+++ K AEC LG++ + G + +K P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECY----LGLGSTFRTLGEYRKAEAVLANGVKQFPN 59
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ +V L +Y+ + K E + AI Y
Sbjct: 60 HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI-----------QSYKQAILFYA 108
Query: 250 RCL 252
L
Sbjct: 109 DKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-11
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 380 VQGKMDAAAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436
V G A EKAIA+ AE Y LG +R G A +K P+ +
Sbjct: 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61
Query: 437 NAGQNRLLAMNYINEGHDDK 456
AM N G ++
Sbjct: 62 ALRVF--YAMVLYNLGRYEQ 79
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-08
Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 23/127 (18%)
Query: 96 NMGRL--AFDSFSEAVKL---DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
+G A + +A+ A + G ++ G +A + P+++
Sbjct: 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61
Query: 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
A+VL +L G + G++ + + + Y A
Sbjct: 62 ALRVFYAMVLYNL-------GRYEQGVELLLKIIAETSDDE-----------TIQSYKQA 103
Query: 211 LGCYEKA 217
+ Y
Sbjct: 104 ILFYADK 110
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 8e-08
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 66 DALALYEIVLE---KDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDPQNACAHT 120
A+ YE + + E ++G G + +G A + VK P +
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTF--RTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYK 150
++ + GR + E K ++ +
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETSDDE 95
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 8e-17
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A+ +LG + ++ Y +A ++DP N VY E Y+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 217 A-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
A + A+AY +G Y + AI Y + LA ++ K
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 3e-15
Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
A LG + + D A++ Y A + P + N VY +G + E+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 394 AI-------AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
AI A+AY +G Y AI Y + L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 8e-12
Identities = 24/103 (23%), Positives = 36/103 (34%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A LG + +DTAL Y+KA P N +Y +GD E+
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ V +A A +G E + +Y K+L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-09
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A+ +LG + D + + +Y KA + + N Y E ++ E
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 326 AFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
A A+A +G Y + A+ Y +L+
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-07
Identities = 13/74 (17%), Positives = 28/74 (37%)
Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428
LG + D A + +KA +PT N +Y + G + + E+
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 429 LKIDPDSRNAGQNR 442
+++ ++R +
Sbjct: 65 IEVGRENREDYRQI 78
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-06
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 34/122 (27%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A + +A +LDP N T+ +Y ++G + E KA+
Sbjct: 23 ALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR------------- 69
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
E + A AY +G Y + +Y A+ Y K+ E
Sbjct: 70 ---------------------ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108
Query: 221 RP 222
Sbjct: 109 HR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-06
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 48 GKDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
GK AL N + F AL Y+ E D N+ + + +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 105 FSEAVKLDPQN-------ACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
+A+++ +N A A+ G Y E + +A Y+K+L+ +
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 78.6 bits (193), Expect = 8e-16
Identities = 28/224 (12%), Positives = 58/224 (25%), Gaps = 39/224 (17%)
Query: 214 YEKAALERPMYAEAYCNM--GVIYKNRGD---LESAIACYERCLAVSPNFEIAKNNMAIA 268
E P N Y GD L A + SP F A+ A+
Sbjct: 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALV 242
Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
+ + L ++
Sbjct: 243 --------------------DIVRHSQHPLDEKQLAALNTEIDNIVTLPE---------- 272
Query: 329 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388
+ + V + D++ + + ++ ++ + LG VY ++G AA
Sbjct: 273 -LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW-LNYVLLGKVYEMKGMNREAA 330
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
+ A P Y +++ S+ + ++ L +
Sbjct: 331 DAYLTAFNLRPGANTLYWIENGIFQ--TSVPYVVPYLDKFLASE 372
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 9e-16
Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 11/130 (8%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYK--------DRDNLDKAVECYQMALSIK-- 364
+ A +P A ++ D L +++
Sbjct: 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPEL 273
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
N S V V+GK D + + I I ++ Y LG +Y G A DA
Sbjct: 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADA 332
Query: 425 YEQCLKIDPD 434
Y + P
Sbjct: 333 YLTAFNLRPG 342
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 2e-15
Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 9/169 (5%)
Query: 99 RLAFDSFSEAVKLDPQNACAHT-----HCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
K+ P T H +L+ D+ L A+E + + + P + A
Sbjct: 177 PWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYAR 236
Query: 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYE---ALKIDPHYAPAYYNLGVVYSELMQYDTA 210
A+V + L + + L + + Y V + D +
Sbjct: 237 AEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDES 296
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
++ M Y +G +Y+ +G A Y + P
Sbjct: 297 YQAINTG-IDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 3e-11
Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 18/160 (11%)
Query: 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLG-----VIYKDRDNLDKAVECYQMALSIKPN 366
+ L E PH N +++ D +L++A E + P
Sbjct: 172 KALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE 231
Query: 367 FSQSLNNLGVVYTV--------QGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAG 416
F+ + +V V + ++ A I+ + + Y V G
Sbjct: 232 FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291
Query: 417 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
+ A + ++ N LL Y +G + +
Sbjct: 292 KTDESYQAINTGIDLEMSWLN---YVLLGKVYEMKGMNRE 328
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 3e-15
Identities = 25/119 (21%), Positives = 46/119 (38%)
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
+ H NP A N G + + +A++ Y A+ P ++ +N YT
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
+ A + E+ I PT+ + Y + A+D Y++ L +D + A
Sbjct: 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-14
Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 7/133 (5%)
Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196
+H +P LA+++ + G G+ ++ Y EA+K +P A Y N
Sbjct: 3 HHHHHHSHMNPD-------LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSN 55
Query: 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
Y++L+++ AL E+ P + + Y + D A+ Y++ L +
Sbjct: 56 RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115
Query: 257 NFEIAKNNMAIAL 269
+ + A + +
Sbjct: 116 SCKEAADGYQRCM 128
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 9e-12
Identities = 20/121 (16%), Positives = 43/121 (35%)
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347
++ + N A + N G + + A+ Y A NP A+ +N Y
Sbjct: 4 HHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 63
Query: 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
A++ + + ++P F + A ++ +KA+ + + EA +
Sbjct: 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
Query: 408 L 408
Sbjct: 124 Y 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-10
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 7/136 (5%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ + P A N G +GD A+ Y + +P +N A T L
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL- 63
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
+ + ++ + + A M + A+ Y+ A + C
Sbjct: 64 ------LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117
Query: 334 AEACNNLGVIYKDRDN 349
EA + + N
Sbjct: 118 KEAADGYQRCMMAQYN 133
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-06
Identities = 20/101 (19%), Positives = 40/101 (39%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + A+ Y ++++ + + + + C +LA E ++L+P
Sbjct: 24 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
+T + +A + Y KAL D S K AA+
Sbjct: 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 8e-06
Identities = 18/80 (22%), Positives = 34/80 (42%)
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ + P+ + + N G +G A + +AI NP A+ Y+N Y
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 415 AGSISLAIDAYEQCLKIDPD 434
LA+ E+C++++P
Sbjct: 63 LLEFQLALKDCEECIQLEPT 82
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 4e-15
Identities = 53/339 (15%), Positives = 100/339 (29%), Gaps = 73/339 (21%)
Query: 114 QNACAHTHCGILYKDEGR---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
A +LY+ +G ++ E KA A + LA V
Sbjct: 139 GYPEAGLAQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICYVELATVYQK-------- 188
Query: 171 GNTQDGIQKYYEALKI-----DPHYAPAYYNLGVVY------SELMQYDTALGCYEKAAL 219
+ ++ E LK A V TA EK A
Sbjct: 189 ---KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244
Query: 220 ERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
P Y ++ ++ + + D+E + + + + A+ + + G V
Sbjct: 245 --PGYPASWVSLAQLLYDFPELGDVEQMMKYLDN--GRAADQPRAELLLGKLYYE-GKWV 299
Query: 277 KLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAY--GEMLKFDM--AIVFYELAFH 328
D A+++KA A Y LG Y G + K A+ A
Sbjct: 300 PA--DAKAAEAHFEKA-------VGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA-- 348
Query: 329 FNPHCAE-----ACNNLGVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379
A A + ++ + A Q+A + ++ + +
Sbjct: 349 -----ARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA--KAQDTPEANDLATQLEA 401
Query: 380 --VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
+ ++++ +AA T A++ L L + G
Sbjct: 402 PLTPAQRAEGQRLVQQELAARGTLAQSTLQLHALQEEDG 440
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 8e-12
Identities = 35/235 (14%), Positives = 62/235 (26%), Gaps = 39/235 (16%)
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKN 263
TA Y++ A Y+EA + I ++ A A Y A +
Sbjct: 19 TVTAQQNYQQLA--ELGYSEAQVGLADIQVGTRDPAQIKQAEATYRA----------AAD 66
Query: 264 NMAIALTDLGT-----KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY----GEML 314
A LG E + ++ + KKA + + + L + Y
Sbjct: 67 TSPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAMLYLQYPHSFP 124
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNLDKAVECYQMALSIKPNFSQSL 371
+ + EA ++Y+ + D VE A
Sbjct: 125 NVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICY 179
Query: 372 NNLGVVYTVQG---KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423
L VY + + + +E + A V + D
Sbjct: 180 VELATVYQKKQQPEQQAELLKQMEAG--VSRGTVTAQRVDSVARVLGDATLGTPD 232
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 25/244 (10%), Positives = 60/244 (24%), Gaps = 32/244 (13%)
Query: 190 YAPAYYNLGVVYSEL--MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-----DLE 242
Y+ A L + +AA + A +G + + +
Sbjct: 34 YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHH 91
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302
A + ++ A + +A+ ++N + +A
Sbjct: 92 EAESLLKK--AFANGEGNTLIPLAMLYLQ-YPHSFP--NVNAQQQISQWQAAGY---PEA 143
Query: 303 MYNLGVAY-GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY---KDRDNLDKAVECYQ 358
+ Y + + L +Y + + + ++ +
Sbjct: 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME 203
Query: 359 MALSIKPNFSQSLNNLGVVYT----VQGKMD--AAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ + V G D A ++EK P ++ +L L
Sbjct: 204 AGV--SRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYP---ASWVSLAQLL 258
Query: 413 RDAG 416
D
Sbjct: 259 YDFP 262
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 6e-09
Identities = 33/201 (16%), Positives = 59/201 (29%), Gaps = 20/201 (9%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFDMAIVF 322
+ L + GD Y++ Y++A L + + A
Sbjct: 3 GLPDQRLANEALKRGDTVTAQQNYQQL--AELGYSEAQVGLADIQVGTRDPAQIKQAEAT 60
Query: 323 YELAFHFNPHCAEACNNLGVIYKD-----RDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
Y A A LG + +A + A +L L ++
Sbjct: 61 YRAA---ADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAML 115
Query: 378 YTVQGKM---DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
Y A + I + AA Y EA +LYR G+ +D E+ K +
Sbjct: 116 YLQYPHSFPNVNAQQQISQWQAAG--YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN 173
Query: 435 SRNAGQNRLLAMNYINEGHDD 455
+ + L + + +
Sbjct: 174 TTDICYVELATVYQKKQQPEQ 194
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 6e-15
Identities = 30/224 (13%), Positives = 64/224 (28%), Gaps = 37/224 (16%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
Y++ A A + + + GD + A ++ A AL
Sbjct: 5 PGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKA---------AAQGDGDAL 53
Query: 270 TDLGTKVKLEG----DINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLK--FDMAIV 321
L ++K+ D Q +KA+ L + AI
Sbjct: 54 ALLA-QLKIRNPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAIT 110
Query: 322 FYELAFH--FNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLG 375
+ A + +A LG+IY ++ KA E ++ + S + G
Sbjct: 111 LLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS-SSLSRTGYAEYWAG 169
Query: 376 VVY------TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
+++ ++ A + + + + +
Sbjct: 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRISK 211
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 8e-15
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 23/186 (12%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIA 246
A Y L + Y A +KAA + +A + + D A
Sbjct: 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIRNPQQADYPQARQ 74
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA--LYYNWHYADAMY 304
E+ AV + + +A L + D+ + + A + DA
Sbjct: 75 LAEK--AVEAGSKSGEIVLARVLVN-RQAGAT--DVAHAITLLQDAARDSESDAAVDAQM 129
Query: 305 NLGVAY--GEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKD------RDNLDKAV 354
LG+ Y G A +++ + A G++++ N KA+
Sbjct: 130 LLGLIYASGVHGPEDDVKASEYFKGSSS-LSRTGYAEYWAGMMFQQGEKGFIEPNKQKAL 188
Query: 355 ECYQMA 360
++
Sbjct: 189 HWLNVS 194
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 22/169 (13%)
Query: 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFD 317
A+ A L GD + + +KA DA+ L + +
Sbjct: 13 AEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAA--AQGDGDALALLAQLKIRNPQQADYP 70
Query: 318 MAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMA----LSIKPNFSQ 369
A E A L + + ++ A+ Q A S +Q
Sbjct: 71 QARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQ 128
Query: 370 SLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
LG++Y A+E + + ++ A G++++
Sbjct: 129 --MLLGLIYASGVHGPEDDVKASEYFKGS-SSLSRTGYAEYWAGMMFQQ 174
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 31/175 (17%)
Query: 190 YAPAYYNLGVVYSE--LMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLE 242
A L + Y A EKA + + N + D+
Sbjct: 49 DGDALALLAQLKIRNPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVA 106
Query: 243 SAIACYER--CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
AI + + S A+ + + G D + Y+K + +
Sbjct: 107 HAITLLQDAARDSESDAAVDAQMLLGLIYAS-GVHGPE--DDVKASEYFKGSSSLS-RTG 162
Query: 301 DAMYNLGVAY----GEMLKFDM--AIVFYELAFHFNPHC----AEACNNLGVIYK 345
A Y G+ + ++ + A+ + ++ C C I K
Sbjct: 163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS------CLEGFDTGCEEFDRISK 211
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 7e-15
Identities = 31/112 (27%), Positives = 53/112 (47%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
++ + G R KA++ Y ALSI P L+N Y+ G+ + AAE E
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A +P Y++A++ LG+ D A +AYE+ ++ + + + R L
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-13
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 2/124 (1%)
Query: 145 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
S P E + L G + I Y +AL I P N YS
Sbjct: 1 GPRSMAPTPE--SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS 58
Query: 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
Q++ A E A + P Y++A+ +G+ + D + A YE+ + N
Sbjct: 59 GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118
Query: 265 MAIA 268
+
Sbjct: 119 RGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 9e-10
Identities = 25/111 (22%), Positives = 41/111 (36%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+D + + G A ++ AI Y A P +N Y +KA E ++
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
A + P +S++ + LG+ A E EK I A G+
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 1/144 (0%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
+ L G + ++ + Y +AL + N AY + + A EL
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
A +P ++A + LG+ D + A E Y+ + + N G + T + K++
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-LETTKRKIE 129
Query: 386 AAAEMIEKAIAANPTYAEAYNNLG 409
A E A A G
Sbjct: 130 EANRGAEPPADDVDDAAGASRGAG 153
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 7/119 (5%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
+ + G +Y A+ Y +A P N Y G E A E
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
V P + A + + +A D+ D Y+K + + G+
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDM-------ADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 20/98 (20%), Positives = 35/98 (35%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N +R ++ A+ LY L N + A + A +DP+
Sbjct: 19 NAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
+ A + G+ D A E+Y K + A+ + A
Sbjct: 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 3e-14
Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 65/286 (22%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+E+AA + IY+ R +L A + +
Sbjct: 33 FEEAA-------DLCVQAATIYRLRKELNLAGDSFLKAADYQ------------------ 67
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH- 332
K + + A+ E A H
Sbjct: 68 -----------------KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110
Query: 333 -----CAEACNNLGVIY-KDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTV 380
A LG I D + KA++CY++A ++ + +
Sbjct: 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170
Query: 381 QGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
G+ A+++ K I + + + + G+ A A ++ DP
Sbjct: 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230
Query: 434 DSRNAGQNRLLA--MNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 477
+ ++ ++ L ++ +NEG ++L E +++ FMRL +
Sbjct: 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF-DNFMRLDKWKIT 275
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 5e-12
Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 14/184 (7%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+Y+ L A +S+ KA E + K GN+ + +
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEA-GNTYVEAYKCFKSGGNSVNAVDSLEN 102
Query: 183 ALKIDPHY------APAYYNLGVVY-SELMQYDTALGCYEKAAL------ERPMYAEAYC 229
A++I H A + LG + ++L Y A+ CYE A + + +
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
+ G A Y + + S +++ ++ G D
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222
Query: 290 KKAL 293
++
Sbjct: 223 QEGQ 226
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 8e-10
Identities = 31/191 (16%), Positives = 53/191 (27%), Gaps = 21/191 (10%)
Query: 89 GICLQMQNMGRLAFDSFSEAVKLDPQN------ACAHTHCGILYKDEGRLVEAAESYHKA 142
+++ LA DSF +A + + +K G V A +S A
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103
Query: 143 LSADPSYKPAAECLAIVLTDLGTSL-KLAGNTQDGIQKYYEALKI------DPHYAPAYY 195
+ A +LG L + I Y A + +
Sbjct: 104 IQIFTHRGQFRRG-ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162
Query: 196 NLGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLESAIACY 248
+ + QY A Y K L + + + G+ D +A
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222
Query: 249 ERCLAVSPNFE 259
+ + PNF
Sbjct: 223 QEGQSEDPNFA 233
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-13
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 167 LKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
LK GN D +Q Y EA+K+DPH Y N Y++ Y A K
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+P + + Y + E A YE L N K +
Sbjct: 67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 5e-11
Identities = 20/90 (22%), Positives = 36/90 (40%)
Query: 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
N+D A++CY A+ + P+ +N Y +G A E K + P + + Y+
Sbjct: 19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK 78
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
A YE+ LK + ++
Sbjct: 79 AAALEFLNRFEEAKRTYEEGLKHEANNPQL 108
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-07
Identities = 17/109 (15%), Positives = 36/109 (33%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ + G + D A+ Y A +PH +N Y + + KA E
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+ +KP++ + + + + A E+ + + L
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-05
Identities = 18/100 (18%), Positives = 35/100 (35%)
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
S DAL Y ++ D N + + + + A++ + V L P +
Sbjct: 16 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGY 75
Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+ + R EA +Y + L + + E L +
Sbjct: 76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 4e-05
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 7/116 (6%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
G + G+++ A+ CY + + P+ + +N + A GD +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-------GDYQK 56
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340
K + + A + +F+ A YE + + L
Sbjct: 57 AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-13
Identities = 20/112 (17%), Positives = 35/112 (31%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AE G Y + + AV+ Y + P ++ +N A K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
AI +P + AY + A++ + D + N R +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 6e-13
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 167 LKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+L G + ++ Y E +K P A Y N ++LM + A+ KA
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+ P + AY + SA+ + + I
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-08
Identities = 16/111 (14%), Positives = 33/111 (29%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+ G Y + A+ Y P A +N + +A+
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
A+ PNF ++ + +A E ++ A + + +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188
+ A ++Y + + P A ++ +L + + I +A++ DP
Sbjct: 17 KSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69
Query: 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
++ AY + +Y +AL + A + +
Sbjct: 70 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 7/120 (5%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
M AE G Y + D +A+ Y + +P +N A AL L
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-------MSF 54
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
+ +A KA+ + ++ A A + ++ A+ + A + + +
Sbjct: 55 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 5e-06
Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 7/104 (6%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
+ A+ Y + P A Y N AIA + + PNF A
Sbjct: 19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 78
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
A A + + + A + + +
Sbjct: 79 ATAQIAV-------KEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 13/104 (12%), Positives = 34/104 (32%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+++ + +A+ Y ++++ + + + L A ++A++ DP
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
A+ A E+ A + D + I
Sbjct: 71 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 4e-12
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 162 DLGTSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
+L K GN ++ Y EA+K DP A Y N ++LM++ AL
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+ + + Y + A YE L V P+ E A+ +
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-11
Identities = 24/114 (21%), Positives = 42/114 (36%)
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
+ NP A+ N G Y + + A+ Y A+ P + +N T + A
Sbjct: 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRA 66
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
+ + I + + + Y S A AYE L++DP + A +
Sbjct: 67 LDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-07
Identities = 20/118 (16%), Positives = 37/118 (31%)
Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
+ Y N A N G Y + + A+ Y A +P A +N
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+A++ + + F + + A E A+ +P+ EA +
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-06
Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
+ A P A+ N G Y +GD +A+ Y + P I +N A LT L
Sbjct: 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL-- 60
Query: 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334
+ + + + + + M ++ A YE A +P
Sbjct: 61 -----MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115
Query: 335 EACNNL 340
EA +
Sbjct: 116 EAREGV 121
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-05
Identities = 20/104 (19%), Positives = 37/104 (35%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + A+ Y +++D N + + CL + A D ++LD +
Sbjct: 21 NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+ +A +Y AL DPS + A E +
Sbjct: 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 5e-12
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 381 QGKMDAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439
QG ++ A + +E+ + P EAY +G YR G A++ Y+ ++++PDS
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72
Query: 440 QNRLL--AMNYINEGHDDKLFEAH 461
+++ +N+ N+ ++L H
Sbjct: 73 ARKMVMDILNFYNKDMYNQLEHHH 96
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-11
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCL 252
+ AL E+ P+ EAY MG Y+ GD + A+ Y+ +
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62
Query: 253 AVSPNFEIAKNN 264
++P+ +
Sbjct: 63 ELNPDSPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 1e-10
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
L G+ ++ +Q E L+ +P AYY +G Y +L + AL Y+ A
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACY 248
P R + + Y
Sbjct: 65 NPDSPALQ--------ARKMVMDILNFY 84
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-10
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
++ +++ A++ + L +P ++ +G Y G A + AI
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 398 NPTYAEAYNN 407
NP
Sbjct: 65 NPDSPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-09
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQ 358
+ N G + A+ E P EA +G Y+ + KA+ YQ
Sbjct: 7 IKELINQG-------DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59
Query: 359 MALSIKPNF 367
A+ + P+
Sbjct: 60 SAIELNPDS 68
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 6e-06
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 279 EGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
+GDI + ++ L +A Y +G AY ++ + A+ Y+ A NP
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL- 71
Query: 338 NNLGVIYKDRDNLDKAVECYQ 358
+ R + + Y
Sbjct: 72 -------QARKMVMDILNFYN 85
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 6e-06
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEA 108
D L L ++ +AL E L+ + EA+ G + + A +++ A
Sbjct: 2 DQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143
++L+P + +++ Y+K +
Sbjct: 62 IELNPDSPALQAR--------KMVMDILNFYNKDM 88
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 93 QMQNMGRL--AFDSFSEAVKLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
++ N G + A + E ++ +P A+ G Y+ G +A +Y A+ +P
Sbjct: 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68
Query: 150 KPAAE 154
PA +
Sbjct: 69 -PALQ 72
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-05
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
N+GD+E+A+ E L P + A M A LG D + +
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG-------DWQKALNN 57
Query: 289 YKKALYYNWHYADA 302
Y+ A+ N
Sbjct: 58 YQSAIELNPDSPAL 71
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 6e-12
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 165 TSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
LK N ++ I+ Y +A++++P A Y N + Y Y ALG +A
Sbjct: 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
Y + Y G +A+ YE + V P+ + AK
Sbjct: 74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-11
Identities = 18/106 (16%), Positives = 38/106 (35%)
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
+ A++ Y A+ + P+ + N + Y A +AI + Y + Y
Sbjct: 30 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89
Query: 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
G A+ YE +K+ P ++A + + ++
Sbjct: 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 9/151 (5%)
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
E A AE Y D E+AI Y + + ++P+ I N ++A
Sbjct: 3 EPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-- 60
Query: 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334
+ +A+ + Y Y + + KF A+ YE PH
Sbjct: 61 -----ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115
Query: 335 EACNNLGVIYK--DRDNLDKAVECYQMALSI 363
+A K + ++A+ + S+
Sbjct: 116 DAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
Y+ A+ Y +A P A Y N + Y A+ R + + +
Sbjct: 28 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 87
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
A + L G + Y+ +
Sbjct: 88 AASNMAL-------GKFRAALRDYETVV 108
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 5/130 (3%)
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
D + +Y +A+ N A N +AY + A+ A + +
Sbjct: 26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
A+ Y+ + +KP+ + + + E+AIA +
Sbjct: 86 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF-----ERAIAGD 140
Query: 399 PTYAEAYNNL 408
++L
Sbjct: 141 EHKRSVVDSL 150
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 66.5 bits (161), Expect = 1e-11
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 2/108 (1%)
Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
+ + LG +T ++ + + +LG + Q A Y A
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHA 178
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
A P + Y + ++ ++GD + I Y R +AV F A N+
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 58.4 bits (140), Expect = 4e-09
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392
C +LG I + R+ +A Y+ A + P+ Q N L ++ + +G
Sbjct: 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
++IA + A NL A E K + Y+++
Sbjct: 211 RSIAVKFPFPAASTNLQKALSKALE-----SRDEVKTKWGVSDFIKAFIKFHGHVYLSKS 265
Query: 453 HDD 455
+
Sbjct: 266 LEK 268
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 56.9 bits (136), Expect = 1e-08
Identities = 26/186 (13%), Positives = 61/186 (32%), Gaps = 7/186 (3%)
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
+ + LG + + V + Y + + +LG + A +Y A
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHA 178
Query: 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
P + N L ++ + + + Y ++++K F + NL + K
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS---KALE 235
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYR--DAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444
+ + ++ + G +Y +S + E+ K + +L+
Sbjct: 236 SRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLV 295
Query: 445 AMNYIN 450
+ IN
Sbjct: 296 HVTVIN 301
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 8e-07
Identities = 18/132 (13%), Positives = 37/132 (28%)
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
K + + + H + P + L LG + T Y A ++
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
P Y L ++ S + T + Y ++ + + A N+ + +
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK 241
Query: 247 CYERCLAVSPNF 258
F
Sbjct: 242 TKWGVSDFIKAF 253
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 2e-04
Identities = 24/183 (13%), Positives = 55/183 (30%), Gaps = 15/183 (8%)
Query: 89 GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
G + +N A + A +L P N + IL +G + Y ++++
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218
Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY- 207
+ PAA + T+ G+ + +A + L +L
Sbjct: 219 F-PAASTNLQKALSKALESRDEVKTKWGVSDFIKAFI----KFHGHVYLSKSLEKLSPLR 273
Query: 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
+ +++ ++ ++ ++ VI + S E +
Sbjct: 274 EKLEEQFKELLFQKAFNSQQLVHVTVI---------NLFQLHHLRDFSNETEQHTYSQDE 324
Query: 268 ALT 270
L
Sbjct: 325 QLC 327
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-10
Identities = 19/114 (16%), Positives = 40/114 (35%)
Query: 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+A CY A++ P + N + Y + + A +A+ + +A+ L
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462
G + S AI ++ + + R + + + I + E R
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 137
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-10
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 166 SLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
LK GN + Y A+ +P A Y N + Y ++ Q + AL +A
Sbjct: 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 70
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+A+ +G + AIA +R +++
Sbjct: 71 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188
+ EAA Y +A++ +P +A+ T+ + + AL++D
Sbjct: 22 GRKYPEAAACYGRAITRNPL-------VAVYYTNRALCYLKMQQPEQALADCRRALELDG 74
Query: 189 HYAPAYYNLGVVYSELMQYDTALGCYEKA 217
A++ LG E+ YD A+ ++A
Sbjct: 75 QSVKAHFFLGQCQLEMESYDEAIANLQRA 103
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
+Y A CY +A P+ A Y N + Y E A+A R L + A +
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
++ ++ +A ++A
Sbjct: 84 GQCQLEM-------ESYDEAIANLQRAY 104
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 17/85 (20%), Positives = 30/85 (35%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
K+ A Y A NP A N + Y ++A+ + AL + ++ L
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANP 399
G D A +++A +
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 18/88 (20%), Positives = 34/88 (38%)
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
+ A Y +A+ N A N + Y +M + + A+ A + +A
Sbjct: 22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPN 366
LG + ++ D+A+ Q A S+
Sbjct: 82 FLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 7/112 (6%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
+ A+ G A ACY R + +P + N A+ +
Sbjct: 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM------- 56
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
Q +A ++AL + A + LG EM +D AI + A+
Sbjct: 57 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 19/98 (19%), Positives = 34/98 (34%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N L K+ +A A Y + ++ + + +C A A++LD Q+
Sbjct: 17 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
AH G + EA + +A S +
Sbjct: 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 3e-10
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 1/131 (0%)
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
+ R +A CY A++ P + N + Y + + A +A+ + +
Sbjct: 15 FVGRK-YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 463
A+ LG + S AI ++ + + R + + + I + E R
Sbjct: 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRI 133
Query: 464 WGKRFMRLYSQ 474
+ + Y
Sbjct: 134 HQESELHSYLT 144
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 1e-08
Identities = 17/88 (19%), Positives = 33/88 (37%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
+ Y A+ +P A Y N + Y ++ Q + AL +A +A+
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPN 257
+G + AIA +R +++
Sbjct: 77 FLGQCQLEMESYDEAIANLQRAYSLAKE 104
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 17/92 (18%), Positives = 31/92 (33%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
K+ A Y A NP A N + Y ++A+ + AL + ++ L
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
G D A +++A + +
Sbjct: 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 7/112 (6%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A+ G A ACY R + +P + N A+ + Q
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-------QQPEQ 56
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
+A ++AL + A + LG EM +D AI + A+
Sbjct: 57 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 19/103 (18%), Positives = 34/103 (33%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N L K+ +A A Y + ++ + + +C A A++LD Q
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
+ AH G + EA + +A S +
Sbjct: 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
+Y A CY +A P+ A Y N + Y E A+A R L + A +
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
++ ++ +A ++A
Sbjct: 79 GQCQLEM-------ESYDEAIANLQRAY 99
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 18/94 (19%), Positives = 35/94 (37%)
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
+ A Y +A+ N A N + Y +M + + A+ A + +A
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372
LG + ++ D+A+ Q A S+ +
Sbjct: 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 6e-10
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 349 NLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
+ A+ Y AL + N + D A KAI + +A
Sbjct: 43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
G + A+ ++C+ ++P ++
Sbjct: 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 7e-09
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 170 AGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
G+ + Y +AL +D A + N + +L YD A KA + +
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
A + G L+ A+ +RC+++ P ++ + +
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 129 EGRLVEAAESYHKALSADPSYKPAAECL---AIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
G A +Y +AL D + + A A LKL + + +A++
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH------LKL-EDYDKAETEASKAIE 93
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
D A Y +L + D A+ ++
Sbjct: 94 KDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 10/129 (7%)
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTD 271
+ A E G GD A+A Y + L + + + N A
Sbjct: 18 PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAAC--- 74
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
+KL D ++ KA+ + A+Y A ++ + D A++ + P
Sbjct: 75 ---HLKL-EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130
Query: 332 HCAEACNNL 340
L
Sbjct: 131 KNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-------DNLDKAVECYQMALSIKPNF 367
+ A+ Y A + + V++++R ++ DKA A+
Sbjct: 43 DYGGALAAYTQALGLDATPQDQA----VLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
++L G++D A +++ ++ P L
Sbjct: 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 2/96 (2%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G ++ + Y + + P Y N + +L +Y A+ ++
Sbjct: 17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76
Query: 230 NMGVIYKNRGDLESAIACYERCL-AVSPNFEIAKNN 264
+ Y+ + A+ + + V E +
Sbjct: 77 RSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 7e-08
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
E G + +AV CY ++ +P +N + G+ A +M ++
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-IDPDSRNAGQN 441
+ T + YR A+ + + + +D ++
Sbjct: 64 GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-07
Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 17/108 (15%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPA----AECLAIVLTDLGTSLKLAGNTQDGIQKY 180
L+K +G EA Y + ++A P A L +KL G IQ
Sbjct: 14 LFK-QGLYREAVHCYDQLITAQPQNPVGYSNKAMAL----------IKL-GEYTQAIQMC 61
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
+ L+ + Y L A+G + +E E Y
Sbjct: 62 QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGY 108
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-06
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
Y A+ CY++ +P Y N + G+ AI ++ L + E
Sbjct: 19 LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ L G + V +
Sbjct: 79 KLQYR-LELAQGAVGSVQIPVVEVDELP 105
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 12/108 (11%), Positives = 28/108 (25%), Gaps = 1/108 (0%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ G + + + A+ Y+ P +N + +A++ Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
L + Y A ++ + E Y+
Sbjct: 64 GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDR 110
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 8e-05
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
E G +G A+ CY++ + P + +N A+AL L G+ Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL-------GEYTQ 56
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
+ ++ L Y + Y + A+ ++
Sbjct: 57 AIQMCQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIP 97
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 6e-09
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 21/126 (16%)
Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----------RDNLDKAVECYQM 359
+ +L F+ E + NP A+ G + + + + +A+ ++
Sbjct: 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE 71
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKM-----------DAAAEMIEKAIAANPTYAEAYNNL 408
AL I P +++ +G YT + D A + ++A+ P +L
Sbjct: 72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131
Query: 409 GVLYRD 414
+ +
Sbjct: 132 EMTAKA 137
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 2e-08
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 26/138 (18%)
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD---INQGVAYYKKALYYNWH 298
E E +P L +L + I + + +++AL +
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+A++ +G AY AF P EA + N D A + +Q
Sbjct: 79 KDEAVWCIGNAY------------TSFAF-LTPDETEA----------KHNFDLATQFFQ 115
Query: 359 MALSIKPNFSQSLNNLGV 376
A+ +P+ + L +L +
Sbjct: 116 QAVDEQPDNTHYLKSLEM 133
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 8e-08
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI----------EKAIAANPT 400
++ + + P + +L G V + + ++ E+A+ +P
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78
Query: 401 YAEAYNNLGVLYRDAGSI-----------SLAIDAYEQCLKIDPDS 435
EA +G Y + LA ++Q + PD+
Sbjct: 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 1e-07
Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 17/128 (13%)
Query: 126 YKDEGRLV---EAAESYHKALSADPSYKPAAECLAIVLTDLG---TSLKLAGNTQDGIQK 179
+ R++ + + ++P VL +L + Q+ I K
Sbjct: 9 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITK 68
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQ-----------YDTALGCYEKAALERPMYAEAY 228
+ EAL IDP A + +G Y+ +D A +++A E+P
Sbjct: 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128
Query: 229 CNMGVIYK 236
++ + K
Sbjct: 129 KSLEMTAK 136
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 2e-08
Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 25/171 (14%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--DLGTSLKLAGNT 173
+H H E + A+ + + E + + G
Sbjct: 2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDE-------EKVQSAFDIKEEGNEFFKKNEI 54
Query: 174 QDGIQKYYEALKIDPHY----------------APAYYNLGVVYSELMQYDTALGCYEKA 217
+ I KY EAL H NL Y++ Y A+ K
Sbjct: 55 NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+A +GV G LE A + +++PN +N+ +
Sbjct: 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 349 NLDKAVECYQMALSIKPNFSQS----------------LNNLGVVYTVQGKMDAAAEMIE 392
+++A+ Y+ AL + + NL Y A +
Sbjct: 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
K + + +A LGV G + A + + ++P++ +
Sbjct: 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 26/136 (19%)
Query: 238 RGDLESAIACYERCLAVSPNFEIAK----------------NNMAIALTDLGTKVKLEGD 281
+ ++ AI Y+ L + E N+A K + D
Sbjct: 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC------YNKNK-D 103
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+ + + K L + + A+Y LGVA + A A NP+ + N+
Sbjct: 104 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163
Query: 342 VI---YKDRDNLDKAV 354
+ K+ DK
Sbjct: 164 LCVNKLKEARKKDKLT 179
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 3e-07
Identities = 16/158 (10%), Positives = 43/158 (27%), Gaps = 19/158 (12%)
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGV 342
++ + Y + + + ++ I+ + + N +
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQS-------LNNLGVVYTVQGKMDAAAEMIEKAI 395
IY + L K ++ ++ L + N + + + + + KAI
Sbjct: 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223
Query: 396 A------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
+ + Y G R I+ +
Sbjct: 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 4e-07
Identities = 20/166 (12%), Positives = 44/166 (26%), Gaps = 13/166 (7%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA------LERPMYAEAYCN 230
K E + Y + + + Y+ + +K ++
Sbjct: 101 ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
+ IY G L+ I +E+ L + + + L+ + +
Sbjct: 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220
Query: 291 KAL------YYNWHYADAMYNLGVAYGEM-LKFDMAIVFYELAFHF 329
KA+ Y G ++ + Y+ A F
Sbjct: 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
+Y + G L + + + + L + E V + +L L ++ +
Sbjct: 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216
Query: 178 QKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+ +A++I YY G +L + + K A
Sbjct: 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 34/219 (15%)
Query: 78 DSGNVEAHIGKG----------ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127
D + IG+G +Q G + V L P A
Sbjct: 61 DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSI------VYLKPSYAFGSVGKEKFQI 114
Query: 128 DEGRLVEA-AESYHKALSADPSYKPAAECLAIVLT--DLGTSLKLAGNTQDGIQKYYEAL 184
++ + + + E L + GT G + + +Y + +
Sbjct: 115 PPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIV 174
Query: 185 KIDPHY---------------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
+ ++ NL + + +L + A+ KA +
Sbjct: 175 SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
G + D E A A +++ L + PN + AK +A+
Sbjct: 235 RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 15/142 (10%)
Query: 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KPNFS 368
+ F+ A +E+ + G +Y +A+ Y+ +S + +FS
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS 184
Query: 369 QS------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
NL + + AA E KA+ + + + G +
Sbjct: 185 NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN 244
Query: 417 SISLAIDAYEQCLKIDPDSRNA 438
LA +++ L++ P+++ A
Sbjct: 245 DFELARADFQKVLQLYPNNKAA 266
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 19/167 (11%)
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
L ++ A +E + E+ + G +Y G + A+ Y++ ++
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS 184
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYK------------KALYYNWHYADAMYNLGVAY 310
N A L L N + + K KAL + + + G A+
Sbjct: 185 NEEAQKAQALRLASHL----NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH 240
Query: 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI---YKDRDNLDKAV 354
+ F++A ++ P+ A L V + + +K +
Sbjct: 241 LAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKL 287
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 7e-07
Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 25/143 (17%)
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
A+ Y KA ++ + + + + A N +
Sbjct: 11 LKKAIQYYVKACELN--EMFGCLSLVSNSQI--NKQKLFQYLSK--ACELNSGNGCRFLG 64
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFD--MAIVF 322
+ G VK D+ + YY KA N D LG G+ + + A+
Sbjct: 65 DFY-ENGKYVKK--DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKT 119
Query: 323 YELAFHFNPHC----AEACNNLG 341
+E A C +AC L
Sbjct: 120 FEKA------CRLGSEDACGILN 136
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 2e-05
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 12/86 (13%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----MDAAA 388
C +L + N K + A + N LG Y GK + AA
Sbjct: 27 MFGCLSLVSNSQI--NKQKLFQYLSKA--CELNSGNGCRFLGDFY-ENGKYVKKDLRKAA 81
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRD 414
+ KA + LG
Sbjct: 82 QYYSKA--CGLNDQDGCLILGYKQYA 105
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 2e-06
Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
+ L + L + + AL + + + ++ + + K CL LA + +
Sbjct: 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLA 64
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
N+ + + + + L+A+P A +L
Sbjct: 65 TIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA-------CELAVQ 117
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG 212
G ++ ++ + LK++ G V M +ALG
Sbjct: 118 YNQVGRDEEALELLWNILKVNL-----GAQDGEVKKTFMDILSALG 158
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 1/148 (0%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ + + + A+ + + + + A E
Sbjct: 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLAT 65
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
+ S + Q + +E+ +AANP E L V Y G
Sbjct: 66 IPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDE 125
Query: 420 LAIDAYEQCLKIDPD-SRNAGQNRLLAM 446
A++ LK++ + + +
Sbjct: 126 EALELLWNILKVNLGAQDGEVKKTFMDI 153
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 2e-06
Identities = 20/153 (13%), Positives = 38/153 (24%), Gaps = 40/153 (26%)
Query: 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
G EAA + +A+ + P EA
Sbjct: 23 VAGEYDEAAANCRRAMEISHTMPP-----------------------------EEAFDHA 53
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE-----------AYCNMGVIYK 236
A + L + L +D AL +KA E A + +
Sbjct: 54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALD 113
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
G A+ +++ + + + +
Sbjct: 114 GLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 39.9 bits (92), Expect = 6e-04
Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 32/132 (24%)
Query: 225 AEAYCNMGVIYK--NRGDLESAIACYERCLAVSPNFE------------IAKNNMAIALT 270
AY + + G+ + A A R + +S +A AL
Sbjct: 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 68
Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWH-----------YADAMYNLGVAYGEMLKFDMA 319
L ++ + KAL+Y + A+Y+ +A + + A
Sbjct: 69 GLR-------SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEA 121
Query: 320 IVFYELAFHFNP 331
+ ++
Sbjct: 122 MPEFKKVVEMIE 133
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 15/143 (10%)
Query: 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KPNF 367
+ F+ A +E+ A G +Y +AV Y +S +
Sbjct: 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL 304
Query: 368 SQS------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
S+ NL + Y + A E +KA+ + + G
Sbjct: 305 SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM 364
Query: 416 GSISLAIDAYEQCLKIDPDSRNA 438
A +E+ L+++P ++ A
Sbjct: 365 NEFESAKGDFEKVLEVNPQNKAA 387
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 15/128 (11%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------YAPAYYNLGV 199
A ++ + GT G + +Y + + A+ NL +
Sbjct: 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325
Query: 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
Y +L +Y A+ C +KA + G + ESA +E+ L V+P +
Sbjct: 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385
Query: 260 IAKNNMAI 267
A+ +++
Sbjct: 386 AARLQISM 393
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 5e-04
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALS--------ADPSYKPAAECLAIVLTDL 163
+ A G +Y G+ ++A Y K +S ++ K + L +L
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323
Query: 164 G-TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
LKL ++ +AL +D Y G + ++++A G +EK
Sbjct: 324 AMCYLKL-REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 377
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 165 TSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
LK N ++ I+ Y +A++++P A Y N + Y Y ALG +A
Sbjct: 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
Y + Y G +A+ YE + V P+ + AK
Sbjct: 67 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 21/105 (20%), Positives = 38/105 (36%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AE Y + + A++ Y A+ + P+ + N + Y A +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
AI + Y + Y G A+ YE +K+ P ++A
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 110
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 17/156 (10%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A V + ++ A+ G + L++A++ Y+M
Sbjct: 145 PMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEM 204
Query: 360 ALSI---KPNFSQS--------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
A++ F N+ + D A +
Sbjct: 205 AIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264
Query: 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
+A G + G + A D + + K PD +
Sbjct: 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----------------PAYYNL 197
A G SL ++ +Q+Y A+ P + N+
Sbjct: 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNI 236
Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+L +YD A+G E +A G G ++SA + + +P+
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
Query: 258 FEIAKNNMAIA 268
+ + +
Sbjct: 297 DKAIRRELRAL 307
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 33/241 (13%), Positives = 59/241 (24%), Gaps = 26/241 (10%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
+ D F+E D A + + A + + + I +
Sbjct: 25 SLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQL------SGSVQISM 78
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
+ L + + G D L I +A G Y A+ E A +
Sbjct: 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQG-------NYADAMEALEAAPVA 131
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF--EIAKNNMAIALTDLGTKVKL 278
+ A+ V+Y I + F A +A +L
Sbjct: 132 GSEHLVAW-MKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL---- 186
Query: 279 EGDINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
+ +A + L +A A+ E +P
Sbjct: 187 ---FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKV 243
Query: 336 A 336
A
Sbjct: 244 A 244
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 22/135 (16%), Positives = 37/135 (27%), Gaps = 28/135 (20%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
L+ + EA ++Y AL+ +L E +
Sbjct: 21 LFV-QKDYKEAIDAYRDALT-----------------------RLDTLILREKPGEPEWV 56
Query: 185 KIDPHYAPAYYNLGVVYSELMQYDTALG-CYEKAALER-PMYAEAYCNMGVIYKNRGDLE 242
++D P Y N+ Y + A E L+R +A L+
Sbjct: 57 ELDRKNIPLYANMSQCYLNIGDLHEAEETSSE--VLKREETNEKALFRRAKARIAAWKLD 114
Query: 243 SAIACYERCLAVSPN 257
A + L P
Sbjct: 115 EAEEDLKLLLRNHPA 129
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 8e-05
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 18/113 (15%)
Query: 349 NLDKAVECYQMALSIKPNFSQS------------------LNNLGVVYTVQGKMDAAAEM 390
+ +A++ Y+ AL+ N+ Y G + A E
Sbjct: 26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85
Query: 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
+ + T +A A + A + + L+ P + + +
Sbjct: 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-05
Identities = 22/220 (10%), Positives = 46/220 (20%), Gaps = 36/220 (16%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ E Y G E A ER + +S +
Sbjct: 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFL------------- 248
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
+ +Y M V YG++ + F+
Sbjct: 249 ----------------------SLYYGLVMDEEAV-YGDLKRKYSMGEAESAEKVFSKEL 285
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
N + L+ + + + + + Y G +
Sbjct: 286 DLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
+ +P + G A +++ K
Sbjct: 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTSR 385
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
+G++ A E++ +AI A+P A ++ L G A + Q +K+ P+
Sbjct: 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 69
Query: 441 N 441
Sbjct: 70 Q 70
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 24/210 (11%), Positives = 55/210 (26%), Gaps = 10/210 (4%)
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY-------Y 289
+ + YE+CL V + A L + +GD+N + Y
Sbjct: 28 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87
Query: 290 KKALYYNWHYADAMYNLGVAYGEML-KFDMAI-VFYELAFHFNPHCAEACNNLGVIYKDR 347
++A+ +Y Y E K++ ++ L + +
Sbjct: 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147
Query: 348 DNLDKAVECYQMAL-SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
+ + ++ A + + + Y A ++ E + E
Sbjct: 148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 207
Query: 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436
+ +E+ L
Sbjct: 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 9e-04
Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 32/194 (16%)
Query: 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA-------ESY 139
G G+ ++N+ E P C CG L + + + +
Sbjct: 155 GMGVAKILENVE-----VKGEK----PAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDF 205
Query: 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL--------------- 184
+ D ++ L ++G + + N + I+KY + L
Sbjct: 206 PEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADG 265
Query: 185 -KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
K+ P N+G ++ + A+ +A P +A ++ + +
Sbjct: 266 AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQ 325
Query: 244 AIACYERCLAVSPN 257
A+A ++ ++P
Sbjct: 326 ALADLKKAQEIAPE 339
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 625 | |||
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 3q3e_A | 631 | HMW1C-like glycosyltransferase; N-glycosylation; 2 | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 100.0 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 100.0 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.97 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.97 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.96 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.96 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.96 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.96 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.95 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.95 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.95 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.95 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.95 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.95 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.94 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.94 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.93 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.93 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.93 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.93 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.92 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.92 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.92 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.92 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.92 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.92 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.91 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.91 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.91 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.91 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.91 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.91 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.91 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.9 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.9 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.9 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.89 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.89 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.88 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.88 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.87 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.87 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.86 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.86 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.86 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.86 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.85 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.84 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.82 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.82 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.82 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.81 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.81 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.81 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.8 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.8 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.79 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.79 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.75 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.75 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.74 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.74 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.74 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.74 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.73 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.72 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.72 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.7 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.7 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.69 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.68 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.67 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.66 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.66 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.66 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.65 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.64 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.63 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.62 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.61 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.61 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.61 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.61 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.6 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.6 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.6 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.59 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.59 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.58 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.58 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.58 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.57 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.56 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.56 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.56 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.56 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.55 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.54 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.54 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.53 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.52 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.52 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.52 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.51 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.5 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.49 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.48 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.47 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.47 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.47 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.47 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.47 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.47 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.46 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.45 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.44 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.44 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.44 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.42 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.42 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.41 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.41 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.4 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.38 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.38 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.38 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.37 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.36 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.35 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.35 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.34 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.28 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.17 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.14 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.14 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.14 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.08 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.05 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.04 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.03 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.0 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.0 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.99 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.99 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.98 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.97 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.94 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.9 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.83 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.75 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.75 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.67 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.63 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.57 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.54 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.49 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.49 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.47 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.45 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.29 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.28 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.21 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.08 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.9 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.86 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.71 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.68 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.61 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.48 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.38 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.36 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.35 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 97.33 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.14 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 97.0 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.98 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.83 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.73 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.67 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.45 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.32 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.04 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.99 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.97 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.93 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.86 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.79 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.63 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.31 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 94.59 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 94.58 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 94.34 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 94.34 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 94.33 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.02 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 93.93 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 93.68 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.65 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.97 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.72 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 92.31 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.91 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.58 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.87 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.41 |
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-65 Score=545.02 Aligned_cols=353 Identities=25% Similarity=0.388 Sum_probs=301.6
Q ss_pred HHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (625)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 345 (625)
+.++..+|.++..+|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.+++++|.++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34555666666668899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (625)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (625)
.+|++++|++.|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|.+.|
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChhhhhh----HHHHhhhccCCCchHHHHHHHHHHHHHhh----h-ccccCCCCCCCCCCCCeEEEEecCC
Q 006937 426 EQCLKIDPDSRNAGQN----RLLAMNYINEGHDDKLFEAHRDWGKRFMR----L-YSQYTSWDNTKDPERPLVIGYVSPD 496 (625)
Q Consensus 426 ~~al~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lrig~~s~d 496 (625)
++++++.|+....... ....+.+... ........+++...... . .++...+...+.++++|||||||+|
T Consensus 169 ~kal~l~~~~~~~~~l~~~~~~~~l~~~~~--~~~~~aia~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~klrIGyvS~d 246 (723)
T 4gyw_A 169 KKLVSIVADQLEKNRLPSVHPHHSMLYPLS--HGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSD 246 (723)
T ss_dssp HHHHHHHHHHHHTTCCCSSCTTGGGGSCCC--HHHHHHHHHHHHHHHHHHHHTTTCCCCCCCCSSTTTTTCEEEEEEESC
T ss_pred HHHHHhChhHHhhccCcccchhhhhhhhcC--HHHHHHHHHHHHHhhhhhhhcccCccccCccccccccccceeeeechh
Confidence 9999998775432110 0011111111 11111122233322211 1 1222223344567889999999999
Q ss_pred cccchHHHHHHHHHhhccCCcEEEEEeecCcc-CChhhHHHHHHhhhcCCceeeCCCC-CHHHHHHHHHhCCCcEEEecC
Q 006937 497 YFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDKIDILVELT 574 (625)
Q Consensus 497 ~~~h~v~~~~~~~~~~~d~~~~ev~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~idilvdl~ 574 (625)
|++|||++|+.+++++||+++|||+||+.++. .|..+.+++..+ ++|+++.++ +|.+++++|++|+|||||||+
T Consensus 247 f~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~a~~i~~d~iDIlidl~ 322 (723)
T 4gyw_A 247 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEA----NHFIDLSQIPCNGKAADRIHQDGIHILVNMN 322 (723)
T ss_dssp SSSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHHS----SEEEEGGGCCCHHHHHHHHHHTTCSEEEESC
T ss_pred hccCcHHHHHHHHHHHhccCceeEEEEEcCCCCccHHHHHHHHhh----ccccccccCCcHHHHHHHHHhccceeEEecc
Confidence 99999999999999999999999999998754 466777776654 899999998 689999999999999999999
Q ss_pred CCCCCchhhhhccCCCceEEecccCCCCCCCCCcceEeecCCCCCCCCCC
Q 006937 575 GHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQ 624 (625)
Q Consensus 575 g~t~~~~~~~~~~r~APvq~~~~g~~~t~g~~~~Dy~~~d~~~~p~~~~~ 624 (625)
|||.++|+.||++|||||||+|||||+|||+++|||+|+|++++||+.++
T Consensus 323 g~t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P~~~~~ 372 (723)
T 4gyw_A 323 GYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAE 372 (723)
T ss_dssp SSBTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSCGGGGG
T ss_pred CCCCCCcchhhhcCCCCceeeeccCCCCCCCCcCCEEEeCCCCCCchhhh
Confidence 99999999999999999999999999999999999999999999998753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=368.56 Aligned_cols=380 Identities=27% Similarity=0.380 Sum_probs=364.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 006937 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (625)
+.+|..++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006937 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (625)
Q Consensus 132 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 211 (625)
+++|+..|+++++.+|++... +..+|.++...|++++|+..|+++++.+|+...++..+|.++...|++++|+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 999999999999999998776 7788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHH
Q 006937 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291 (625)
Q Consensus 212 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 291 (625)
..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++...+.. +|.++...|++++|+..+++
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN-------LGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH-------HHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------HHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765554 45555557899999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 006937 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (625)
Q Consensus 292 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (625)
++..+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|+++.++
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 308 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 006937 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (625)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (625)
..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++++|++..++.++...
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-42 Score=343.73 Aligned_cols=359 Identities=26% Similarity=0.380 Sum_probs=343.7
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+.+...+..++..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 109 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (625)
++...|++++|+..|+++++.+|+.... +..+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCV-------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHH-------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999998776 677888888899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++...|++...+..++.+ +...|++++
T Consensus 183 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-------~~~~g~~~~ 255 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV-------YYEQGLIDL 255 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH-------HHHTTCHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHH-------HHHcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999987666555554 455789999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006937 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (625)
|+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..|+++++..
T Consensus 256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006937 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (625)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (625)
|++..++..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|+
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999998875
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=343.65 Aligned_cols=387 Identities=16% Similarity=0.119 Sum_probs=356.3
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
.++.++.+|..++..|+|++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999 6899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHH--------------------------------------------------
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECL-------------------------------------------------- 156 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------------------------------------------------- 156 (625)
...|++++|+..|++++...|.+.......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999999987543321110
Q ss_pred ----------------------HHHHHHhHHHHHH---hCChHHHHHHHHHHHh-----h--C-------CCCHHHHHHH
Q 006937 157 ----------------------AIVLTDLGTSLKL---AGNTQDGIQKYYEALK-----I--D-------PHYAPAYYNL 197 (625)
Q Consensus 157 ----------------------a~~~~~l~~~~~~---~~~~~~A~~~~~~~l~-----~--~-------~~~~~~~~~l 197 (625)
...+..+|.++.. .|++++|+..|+++++ . + |....++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 3445666666665 8999999999999999 5 3 4457789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhh
Q 006937 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (625)
Q Consensus 198 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (625)
|.++...|++++|+..++++++..|. ..++..+|.++...|++++|+..+++++...|.+...+..++.+ +.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-------~~ 315 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM-------NF 315 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHH-------HH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHH-------HH
Confidence 99999999999999999999999999 99999999999999999999999999999999987765555554 44
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (625)
..|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.+|
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 358 QMALSIKPNFSQ------SLNNLGVVYTV---QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 358 ~~al~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (625)
+++++..|++.. ++..+|.++.. .|++++|+..+++++..+|++..++..+|.++...|++++|..+|+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999888755 99999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChhhhhhH
Q 006937 429 LKIDPDSRNAGQNR 442 (625)
Q Consensus 429 l~~~p~~~~~~~~~ 442 (625)
++++|++..++..+
T Consensus 476 ~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 476 ADLARTMEEKLQAI 489 (514)
T ss_dssp HHHCSSHHHHHHHH
T ss_pred HHhccccHHHHHHH
Confidence 99999998887664
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=336.15 Aligned_cols=387 Identities=16% Similarity=0.155 Sum_probs=337.2
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
..++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|+++.++..+|.+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHH--------------------------------------------------
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAEC-------------------------------------------------- 155 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------------------------------------------- 155 (625)
+...|++++|+..|+ ++...|+.......
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999999995 77777764432110
Q ss_pred --------------HHHHHHHh-----HHHHHHhCChHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHH
Q 006937 156 --------------LAIVLTDL-----GTSLKLAGNTQDGIQKYYEALKIDPHYAP-------AYYNLGVVYSELMQYDT 209 (625)
Q Consensus 156 --------------~a~~~~~l-----~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-------~~~~la~~~~~~~~~~~ 209 (625)
+...+..+ +......|++++|+..|+++++.+|++.. ++..+|.++...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 00001111 33334456899999999999999999865 57788899999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHH
Q 006937 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (625)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (625)
|+..++++++.+|. ..++..+|.++...|++++|+..++++++..|++...+..++.++ ...|++++|+..+
T Consensus 262 A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY-------FILQDYKNAKEDF 333 (537)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------HHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH-------HhcCCHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999877655555544 4568999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 006937 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (625)
Q Consensus 290 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 369 (625)
+++++.+|.+..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++..|++..
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred ------HHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006937 370 ------SLNNLGVVYTVQ----------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (625)
Q Consensus 370 ------~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (625)
.+..+|.++... |++++|+.+|+++++.+|++..++..+|.+|..+|++++|+.+|+++++++|
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 467778999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhh
Q 006937 434 DSRNAGQN 441 (625)
Q Consensus 434 ~~~~~~~~ 441 (625)
++......
T Consensus 494 ~~~~~~~~ 501 (537)
T 3fp2_A 494 TMDEKLQA 501 (537)
T ss_dssp -CHHHHHH
T ss_pred CcHHHHHH
Confidence 98877554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=333.95 Aligned_cols=388 Identities=17% Similarity=0.151 Sum_probs=260.0
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHh---------------
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK--------------- 110 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------- 110 (625)
.++..+..++..+...|++++|+..|++++...|++ ..++.+|.++...|++++|+..|++++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 356667778888888888888888888887777643 4556666666666666666666665521
Q ss_pred ---------------cCCCc-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006937 111 ---------------LDPQN-------------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (625)
Q Consensus 111 ---------------~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 156 (625)
..|.. ..++..+|.+|...|++++|+..|+++++.+|++...+..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 23443 77899999999999999999999999999999887764433
Q ss_pred HH----------------------------------------------------------------HHHHhHHHHHHhCC
Q 006937 157 AI----------------------------------------------------------------VLTDLGTSLKLAGN 172 (625)
Q Consensus 157 a~----------------------------------------------------------------~~~~l~~~~~~~~~ 172 (625)
+. ++..++..+...|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 21 23345556666666
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (625)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (625)
+++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|.+..++..+|.+|...|++++|+..|++++
T Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 006937 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (625)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 332 (625)
+..|.+...+..++.++ ...|++++|++.|+++++..|.+..++..++.++...|++++|+..|+++++..|.
T Consensus 401 ~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 401 TMDPQFGPAWIGFAHSF-------AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHCTTCHHHHHHHHHHH-------HHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HhCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 66666554444333333 33456666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 006937 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (625)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (625)
++.++..+|.++...|++++|+++|+++++. +|+. ..++..+|.++...|++++|+..++++++.+|+++.++
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 6666666666666666666666666666665 4443 55666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
..+|.+|...|++++|.++|+++++++|++..++..
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 666666666666666666666666666666655544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=332.04 Aligned_cols=330 Identities=19% Similarity=0.196 Sum_probs=273.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
.|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCC
Q 006937 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 359 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 435 (625)
++++.+|++..++.++|.++...|++++|++.|+++++.+|++..++..+|.++..+ |++++|.+.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred hhhhhhHHHHhhhccCCCchHHHHHHHHHHHH-HhhhccccCCCCCCCCCCCCeEEEEecCCcccchHHHHHHHHHhh--
Q 006937 436 RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR-FMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVY-- 512 (625)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lrig~~s~d~~~h~v~~~~~~~~~~-- 512 (625)
...+..+. ..+........++|..+ +.....+. .+.+..+++++|||+++++|..|+++.++..+++.
T Consensus 162 ~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~ 232 (568)
T 2vsy_A 162 VEPFAFLS-------EDASAAEQLACARTRAQAIAASVRPL--APTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQ 232 (568)
T ss_dssp SCHHHHTT-------SCCCHHHHHHHHHHHHHHHHTTCCCC--CCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHH
T ss_pred cChHHHhC-------CCCHHHHHHHHHHHHHhccCcccCCC--CCCCCCCCCCeEEEEECcccccChHHHHHHHHHhhcc
Confidence 77654321 33444444455555543 33222221 12333457899999999999999999999999999
Q ss_pred ccCCcEEEEEeecCcc-CChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCCCcEEEecCCCCCCchhhhhccCCCc
Q 006937 513 HDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 591 (625)
Q Consensus 513 ~d~~~~ev~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~idilvdl~g~t~~~~~~~~~~r~AP 591 (625)
+++.+|||++|+.++. .+..+.+++.. . .|+++..++..++++.|+++++||++++.|||.++++.+++.|++|
T Consensus 233 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~ 307 (568)
T 2vsy_A 233 RRQPDLQMHLFATSGDDGSTLRTRLAQA----S-TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAP 307 (568)
T ss_dssp HHCTTEEEEEEESSCCCSCHHHHHHHHT----S-EEEECTTCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSS
T ss_pred CCcccEEEEEEECCCCCccHHHHHHHhc----C-eEEECCCCCHHHHHHHHHhCCCCEEEECCCCCCcchHHHHhcCCCc
Confidence 9999999999987643 45666665542 2 6888888888999999999999999999999999999999999999
Q ss_pred eEEecccCCCCCCCCCcceEeecCCCCCCCC
Q 006937 592 VQVTWIGYPNTTGLPTIDYRITDSLADPPET 622 (625)
Q Consensus 592 vq~~~~g~~~t~g~~~~Dy~~~d~~~~p~~~ 622 (625)
||++|+|||.|+|++.+||+++|.++.|.+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~ 338 (568)
T 2vsy_A 308 VQVNWLAYPGTSGAPWMDYVLGDAFALPPAL 338 (568)
T ss_dssp EEEEESSSSSCCCCTTCCEEEECTTTSCTTT
T ss_pred eeEeeecCCcccCCCCceEEEECCCcCCccc
Confidence 9999999999999999999999999888764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=316.87 Aligned_cols=334 Identities=16% Similarity=0.180 Sum_probs=270.3
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
.+.++..++.+|..++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHH-----HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYK---PAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~a~~-----~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (625)
.++...|++++|+..|+++++..|++. ..+..++.+ +..+|..+...|++++|+..|+++++..|.+..++.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999999987 766655544 667788999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHH-----HH
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA-----LT 270 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~ 270 (625)
.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|++...+..+..+ ..
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987665443221 22
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (625)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 346 (625)
.+|..+...|++++|+..|+++++..|.++. .+..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 341 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 2344444555566666666666555555532 455555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 006937 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (625)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 377 (625)
.|++++|+..|+++++++|+++.++..++.+
T Consensus 342 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 342 EEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 5555555555555555555555555555533
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=324.30 Aligned_cols=372 Identities=17% Similarity=0.082 Sum_probs=303.3
Q ss_pred CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH---
Q 006937 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL--- 156 (625)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--- 156 (625)
.+...+..++..+...|++++|+..|++++...|+. ..+..++.++...|++++|+..|++++.. |.+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 467889999999999999999999999999998855 66788999999999999999998887543 2222222221
Q ss_pred ----------------------------------------HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH---
Q 006937 157 ----------------------------------------AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA--- 193 (625)
Q Consensus 157 ----------------------------------------a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~--- 193 (625)
..++..+|.++...|++++|++.|+++++.+|.+..+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 3457778889999999999999999999988865544
Q ss_pred --------------------------------------------------------------------HHHHHHHHHHcC
Q 006937 194 --------------------------------------------------------------------YYNLGVVYSELM 205 (625)
Q Consensus 194 --------------------------------------------------------------------~~~la~~~~~~~ 205 (625)
+..++.++...|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 444555566666
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHH
Q 006937 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (625)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (625)
++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|++...+. .++..+...|++++|
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL-------AVGIYYLCVNKISEA 392 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHH-------HHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHH-------HHHHHHHHhccHHHH
Confidence 6666666666666666666666666666666666666666666666666666554443 445555667899999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 006937 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (625)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (625)
+..|+++++..|.+..++..++.++...|++++|+..|+++++..|++..++..+|.++...|++++|+++|+++++..|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
.++.++..+|.++...|++++|++.|+++++. +|+. ..++..+|.+|...|++++|+..|+++++.+|++..+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999999988 6664 7899999999999999999999999999999998887
Q ss_pred hhhHHHHhhhccCCCchHHHHHHH
Q 006937 439 GQNRLLAMNYINEGHDDKLFEAHR 462 (625)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~ 462 (625)
+.. ++..|...|+.+++.+..+
T Consensus 553 ~~~--l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 553 HTA--IALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHH--HHHHHHHTTCHHHHHHHHH
T ss_pred HHH--HHHHHHHhCCHHHHHHHHH
Confidence 766 4555666777766655443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=312.11 Aligned_cols=358 Identities=17% Similarity=0.153 Sum_probs=317.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (625)
Q Consensus 65 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (625)
..+...+.+++..+|.++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHHcCCHHH
Q 006937 145 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNL------------GVVYSELMQYDT 209 (625)
Q Consensus 145 ~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~l------------a~~~~~~~~~~~ 209 (625)
.+|++..+ +..+|.++...|++++|+..|+++++.+|.+. .++..+ |.++...|++++
T Consensus 89 ~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 89 LKMDFTAA-------RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred cCCCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99998765 77888889999999999999999999999988 776555 667999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHH
Q 006937 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (625)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (625)
|+..|+++++..|.+..++..+|.++...|++++|+..|+++++..|++...+..++.++. ..|++++|+..+
T Consensus 162 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~ 234 (450)
T 2y4t_A 162 AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY-------QLGDHELSLSEV 234 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH-------HTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998766655555554 467999999999
Q ss_pred HHHHhhCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHH
Q 006937 290 KKALYYNWHYADAMYNL------------GVAYGEMLKFDMAIVFYELAFHFNPHCA----EACNNLGVIYKDRDNLDKA 353 (625)
Q Consensus 290 ~~~l~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A 353 (625)
++++...|++...+..+ |.++...|++++|+..|+++++..|.++ ..+..+|.++...|++++|
T Consensus 235 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999887666 9999999999999999999999999984 4789999999999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH------------HHHcC-----
Q 006937 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL------------YRDAG----- 416 (625)
Q Consensus 354 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g----- 416 (625)
+..++++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..++.+ |..+|
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 9999999999999999999999999999999999999999999999999999999954 44555
Q ss_pred CHHHHHHHHHH-HHhcCCCCh
Q 006937 417 SISLAIDAYEQ-CLKIDPDSR 436 (625)
Q Consensus 417 ~~~~A~~~~~~-al~~~p~~~ 436 (625)
+.+++.+.|++ +++.+|++.
T Consensus 395 ~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CTTHHHHHHHHHHHHSCGGGC
T ss_pred CHHHHHHHHHHHHHHhCCCCC
Confidence 56778888886 888888864
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=292.36 Aligned_cols=342 Identities=16% Similarity=0.175 Sum_probs=297.9
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHH-----HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 127 KDEGRLVEAAESYHKALSADP---SYKPAAECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~a~-----~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (625)
...|++++|+..|+++++..| ++...+..++. .+..+|.++...|++++|+..++++++..|.++.++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 77776555432 2455688999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh
Q 006937 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++...+..+..+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------- 232 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK--------- 232 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999999876543322211
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAV 354 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~~~A~ 354 (625)
.......+|.++...|++++|+..++++++..|++.. ++..+|.++...|++++|+
T Consensus 233 --------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 233 --------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 1234455677777888888888888888888777763 4556788888888888888
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006937 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (625)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (625)
..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++..+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888877766543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=285.14 Aligned_cols=329 Identities=16% Similarity=0.132 Sum_probs=300.3
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 160 (625)
+++.++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|++... +
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~ 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA-------R 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-------H
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchH-------H
Confidence 467899999999999999999999999999999999999999999999999999999999999999998765 7
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006937 161 TDLGTSLKLAGNTQDGIQKYYEALKIDP---HYAPAYYNL------------GVVYSELMQYDTALGCYEKAALERPMYA 225 (625)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~~~~~ 225 (625)
..+|.++...|++++|+..|+++++.+| ++..++..+ |.++...|++++|+..++++++..|.++
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 154 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA 154 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 8888899999999999999999999999 888888777 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 006937 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (625)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 305 (625)
.++..+|.++...|++++|+..++++++..|.+...+..++.++.. .|++++|+..++++++..|++..++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ-------LGDHELSLSEVRECLKLDQDHKRCFAH 227 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhhCccchHHHHH
Confidence 9999999999999999999999999999999988766655555544 679999999999999999999887655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH----HHHHHHHHHHHc
Q 006937 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQ 381 (625)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~ 381 (625)
+..+. .......+|.++...|++++|+..++++++..|+++. ++..+|.++...
T Consensus 228 ~~~~~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 228 YKQVK----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHH----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 54432 1345567799999999999999999999999999874 567899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 006937 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (625)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (625)
|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++|++..++..+..+
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987765443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-35 Score=304.34 Aligned_cols=356 Identities=14% Similarity=0.097 Sum_probs=330.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc-----------
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----------- 115 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------- 115 (625)
++..++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++..|.+
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999887632
Q ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Q 006937 116 --------------------------------------------------------------------ACAHTHCGILYK 127 (625)
Q Consensus 116 --------------------------------------------------------------------~~~~~~la~~~~ 127 (625)
..++..+|.++.
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (514)
T 2gw1_A 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197 (514)
T ss_dssp HHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 666777888777
Q ss_pred H---cCCHHHHHHHHHHHHh-----c--CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 006937 128 D---EGRLVEAAESYHKALS-----A--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (625)
Q Consensus 128 ~---~g~~~~A~~~~~~al~-----~--~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 197 (625)
. .|++++|+..|+++++ . .|++.........++..+|.++...|++++|+..++++++.+|. ..++..+
T Consensus 198 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l 276 (514)
T 2gw1_A 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYM 276 (514)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHH
Confidence 6 8999999999999999 6 77776555566778999999999999999999999999999999 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhh
Q 006937 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (625)
Q Consensus 198 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (625)
|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+... +..+|.++.
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~ 349 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP-------YIQLACLAY 349 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHH-------HHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHH-------HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987654 445556666
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cC
Q 006937 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE------ACNNLGVIYKD---RD 348 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~~---~~ 348 (625)
..|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+.. ++..+|.++.. .|
T Consensus 350 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 6789999999999999999999999999999999999999999999999999888754 99999999999 99
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006937 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (625)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (625)
++++|+..|+++++..|++..++..+|.++...|++++|+..|+++++++|++..++..+..
T Consensus 430 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988877643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=301.88 Aligned_cols=381 Identities=14% Similarity=0.050 Sum_probs=305.0
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHc---------CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC-----
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEK---------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD----- 112 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 112 (625)
.+..+..+|.++...|++++|++.|+++++. +|.....+.++|.+|..+|++++|+.++++++++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556678999999999999999999999875 66777889999999999999999999999999863
Q ss_pred ---CCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC
Q 006937 113 ---PQNACAHTHCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (625)
Q Consensus 113 ---p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 187 (625)
+..+.++..+|.++... +++++|+.+|+++++++|+++..+..++.++.. +...++.++|++.++++++++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~----l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYR----LDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HHHSCCCCCTHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCchHHHHHHHHHHHHhhcC
Confidence 35677888888777664 579999999999999999999885554444333 335688899999999999999
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHh
Q 006937 188 PHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (625)
Q Consensus 188 ~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 263 (625)
|++..++..+|..+.. .+++++|++++++++..+|....++..+|.++...|++++|+..++++++..|++...+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 9999999998877665 467889999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHhchh------------hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 006937 264 NMAIALTDLGTK------------VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331 (625)
Q Consensus 264 ~~~~~~~~l~~~------------~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 331 (625)
.++.++...+.. ....+.+++|+..++++++.+|....++..+|.++...|++++|+.+|++++++.+
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 888877554322 22234578899999999999999999999999999999999999999999999988
Q ss_pred CCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006937 332 HCAE---ACNNLGVI-YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (625)
Q Consensus 332 ~~~~---~~~~la~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (625)
.+.. ++..+|.+ +...|++++|+..|++++++.|++..... ....+...+++++..+|+++.++..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7643 45666654 45789999999999999999999865332 2345667888999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
+|.+|..+|++++|+++|++|+++.|.++.+...
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHCC----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999999999999999999887654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=299.75 Aligned_cols=353 Identities=17% Similarity=0.165 Sum_probs=311.8
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHH------
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA------ 118 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------ 118 (625)
+.++..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+ ++..+|+....
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPML 134 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999995 77766654322
Q ss_pred --------------------------------------------------------------HHHHH--------HHHHH
Q 006937 119 --------------------------------------------------------------HTHCG--------ILYKD 128 (625)
Q Consensus 119 --------------------------------------------------------------~~~la--------~~~~~ 128 (625)
...++ .....
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence 11111 22223
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 006937 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (625)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 208 (625)
.|++++|+..|+++++..|++...+..++.++..+|.++...|++++|+..|+++++.+|. ..++..+|.++...|+++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH
Confidence 3589999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHH
Q 006937 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (625)
Q Consensus 209 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 288 (625)
+|+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|++...+..++.++ ...|++++|+..
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-------~~~g~~~~A~~~ 366 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL-------YKQGKFTESEAF 366 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHH-------HHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876655555544 456899999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHc----------CCHHH
Q 006937 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------EACNNLGVIYKDR----------DNLDK 352 (625)
Q Consensus 289 ~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~----------~~~~~ 352 (625)
++++++.+|++..++..+|.++...|++++|+..|+++++..|.+. ..+..+|.++... |++++
T Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 9999999999999999999999999999999999999999876543 3466778999999 99999
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006937 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (625)
Q Consensus 353 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (625)
|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++++|+......
T Consensus 447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999887654
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=292.85 Aligned_cols=171 Identities=12% Similarity=0.083 Sum_probs=134.4
Q ss_pred hHHHHhhhccCCCchHHHHHHHHHHHHHh-h--hccccCCCCCCCCCCCCeEEEEecCCcccchHHHHHHHHHhhccCCc
Q 006937 441 NRLLAMNYINEGHDDKLFEAHRDWGKRFM-R--LYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQN 517 (625)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~lrig~~s~d~~~h~v~~~~~~~~~~~d~~~ 517 (625)
+.++-+.|...-+.-+..+...++.++.. . .....+....++.++++++|||+|.+|++|+|+.++.+++.+ ||++
T Consensus 226 ~~ym~csy~~~~~kh~iK~~~n~~~~~~l~~~~g~~~~~~~~~~~~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-dR~~ 304 (631)
T 3q3e_A 226 DVYMHCSYDTSVNKHDVKRALNHVIRRHIESEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-AREH 304 (631)
T ss_dssp HHHHHGGGSCSTTTTHHHHHHHHHHHHHHHHHSCCCCCCCSSCCEETTEEEEEEECSSCCTTSHHHHHHHHHHHH-HTTT
T ss_pred ceeeeccCCCCchhHHHHHHHHHHHHHhhHhhcCCcccccCCCCCCCCCeEEEEEeCcccCCCcHHHHHHHHHHh-hhhc
Confidence 44455666655444444443444444422 1 111111123334467899999999999999999999999987 9999
Q ss_pred EEEEEeecCccCChhhHHHHHHhhhcCCceeeCCCCC----HHHHHHHHHhCCCcEEEecCCCCCCchhhhhccCCCceE
Q 006937 518 YKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID----EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQ 593 (625)
Q Consensus 518 ~ev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~idilvdl~g~t~~~~~~~~~~r~APvq 593 (625)
|||+||+ ++..|+.| |+ .+++|+++.+++ +++++++|++|+|||||||+|||.+.++.++++||||||
T Consensus 305 FEV~~Ys-~~~~D~~t---r~----~~d~f~~l~~~s~~~~~~~ia~~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPVQ 376 (631)
T 3q3e_A 305 FYLIGLG-SPSVDQAG---QE----VFDEFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQ 376 (631)
T ss_dssp SEEEEEE-CTTSCHHH---HT----TSSEEEECCCSSHHHHHHHHHHHHHHHTCSEEEESCCSSSHHHHHHTTSCCSSEE
T ss_pred EEEEEEe-CCCCCHHH---Hh----cCcEEEECCCCCccccHHHHHHHHHhcCCCEEEECCCCCCchhHHHHhCCCchhe
Confidence 9999999 77778876 22 358999999998 889999999999999999999998777777779999999
Q ss_pred EecccCCCCCCCCCcceEeecCCCCCC
Q 006937 594 VTWIGYPNTTGLPTIDYRITDSLADPP 620 (625)
Q Consensus 594 ~~~~g~~~t~g~~~~Dy~~~d~~~~p~ 620 (625)
|+|||||+|||+++|||+|+|+.++|+
T Consensus 377 vs~lGyp~TTGl~~iDY~i~D~~~~~~ 403 (631)
T 3q3e_A 377 AIALGHPATTHSDFIEYVIVEDDYVGS 403 (631)
T ss_dssp EEECSSCSCCCCTTCCEEEEEGGGCCC
T ss_pred EeccCCCcccCcccCCEEEeCCCCCCc
Confidence 999999999999999999999987764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=266.03 Aligned_cols=294 Identities=19% Similarity=0.189 Sum_probs=169.2
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
.+.+.++.+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 126 YKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (625)
Q Consensus 126 ~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (625)
+...| ++++|+..|+++++..|++... +..+|.++...|++++|+..++++++..|.+...+..+|.++...
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKTYGPA-------WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTTCTHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCccHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 66666 6666666666666666655443 555566666666666666666666666665555555566666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..+....
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------------ 228 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN------------------------ 228 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC------------------------
T ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc------------------------
Confidence 66666666666666666655555555555555555555555555555544332110
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006937 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (625)
....|....++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+.+|+++++++
T Consensus 229 --------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 229 --------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp --------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred --------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 000133344555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHH
Q 006937 365 PNFSQSLNNLGVVY 378 (625)
Q Consensus 365 ~~~~~~~~~la~~~ 378 (625)
|+++.++..++.++
T Consensus 301 p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 301 RDDTFSVTMLGHCI 314 (330)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHH
Confidence 55555555555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=261.00 Aligned_cols=310 Identities=15% Similarity=0.157 Sum_probs=276.6
Q ss_pred HHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006937 71 YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (625)
Q Consensus 71 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (625)
....+...|.++..+..+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 34556667889999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006937 151 PAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (625)
Q Consensus 151 ~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 229 (625)
.. +..+|.++...| ++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.+...+.
T Consensus 91 ~~-------~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 163 (330)
T 3hym_B 91 VS-------WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPML 163 (330)
T ss_dssp HH-------HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHH
T ss_pred HH-------HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHH
Confidence 76 777888888999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (625)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 309 (625)
.+|.++...|++++|+..++++++..|++...+..++.++.. .|++++|+..+++++...+....
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~-------- 228 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ-------NGEWKTAEKWFLDALEKIKAIGN-------- 228 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHTTTSC--------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-------cccHHHHHHHHHHHHHHhhhccc--------
Confidence 999999999999999999999999999998877766666555 67999999999999887554211
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389 (625)
Q Consensus 310 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 389 (625)
....|....++..+|.++...|++++|+.+|+++++..|++..++..+|.++...|++++|+.
T Consensus 229 -----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 229 -----------------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp -----------------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred -----------------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHH
Confidence 011256678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHH-HHcCCHH
Q 006937 390 MIEKAIAANPTYAEAYNNLGVLY-RDAGSIS 419 (625)
Q Consensus 390 ~~~~al~~~p~~~~~~~~la~~~-~~~g~~~ 419 (625)
+++++++.+|++..++..++.++ ...|+.+
T Consensus 292 ~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 292 YFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999998 5666654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=271.40 Aligned_cols=300 Identities=17% Similarity=0.180 Sum_probs=219.0
Q ss_pred HcCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 128 DEGRLVEAAE-SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 128 ~~g~~~~A~~-~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
..|++++|+. .|++++...|+++... ...++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|+
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRD---HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTT---CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3455555555 5555555554432110 11144455555555555666666655555555556666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhH---------HHHHHHhchhhh
Q 006937 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM---------AIALTDLGTKVK 277 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---------~~~~~~l~~~~~ 277 (625)
+++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|++...+... ...+..++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 66666666666666666666666666666666666666666666666655544333211 11111233333
Q ss_pred hcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 278 LEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 355 (625)
..|++++|+..++++++.+|. .+.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 568999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHcCCHHHHHHH
Q 006937 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-----------AEAYNNLGVLYRDAGSISLAIDA 424 (625)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~ 424 (625)
+|+++++++|++..++..+|.++...|++++|+.+|++++++.|++ ..++..+|.++..+|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 9999999999999999999999999999999999999999998887 89999999999999999999999
Q ss_pred HHHHHhc
Q 006937 425 YEQCLKI 431 (625)
Q Consensus 425 ~~~al~~ 431 (625)
++++++.
T Consensus 353 ~~~~l~~ 359 (368)
T 1fch_A 353 DARDLST 359 (368)
T ss_dssp HTTCHHH
T ss_pred HHHHHHH
Confidence 9877764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-29 Score=256.45 Aligned_cols=368 Identities=18% Similarity=0.149 Sum_probs=322.8
Q ss_pred cCcchHhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhcCCCc
Q 006937 44 KGFEGKDALSYANILRS----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM----QNMGRLAFDSFSEAVKLDPQN 115 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 115 (625)
...+++..+.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .+
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~ 110 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GL 110 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC
Confidence 34578899999999999 99999999999999986 688999999999999 99999999999999875 58
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH----hCChHHHHHHHHHHHhhC
Q 006937 116 ACAHTHCGILYKD----EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKID 187 (625)
Q Consensus 116 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~ 187 (625)
+.+++.+|.+|.. .+++++|+.+|+++.+. .+..+ +..+|.++.. .+++++|+.+|+++.+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a-------~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~- 180 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSG-------QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ- 180 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH-------HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 8999999999999 89999999999999875 34444 7778888887 78999999999999986
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcH
Q 006937 188 PHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFE 259 (625)
Q Consensus 188 ~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~ 259 (625)
.++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.++.. .+++++|+.+|+++++.. +.
T Consensus 181 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~ 255 (490)
T 2xm6_A 181 -GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NS 255 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CH
T ss_pred -CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CH
Confidence 579999999999999 89999999999999886 468899999999997 899999999999998763 34
Q ss_pred HHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCCCCH
Q 006937 260 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-----LKFDMAIVFYELAFHFNPHCA 334 (625)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~ 334 (625)
.....++.++..- ....+++++|+.+|+++.+. .++.+++.+|.++... +++++|+..|+++.+. .++
T Consensus 256 ~a~~~lg~~y~~g---~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~ 328 (490)
T 2xm6_A 256 IAQFRLGYILEQG---LAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDA 328 (490)
T ss_dssp HHHHHHHHHHHHT---TTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCH
Confidence 4444444443320 01168999999999999865 6789999999999998 9999999999999986 567
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006937 335 EACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNN 407 (625)
Q Consensus 335 ~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (625)
.+++.+|.+|...| ++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++.. ++.++++
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~ 404 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHH
Confidence 89999999999877 899999999999987 679999999999999 899999999999999864 6899999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhcCCC---Chhhhhh
Q 006937 408 LGVLYRD----AGSISLAIDAYEQCLKIDPD---SRNAGQN 441 (625)
Q Consensus 408 la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~ 441 (625)
||.+|.. .+++++|..+|+++++..|+ ++.+..+
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 9999999 89999999999999999965 5555444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-30 Score=266.61 Aligned_cols=362 Identities=13% Similarity=0.036 Sum_probs=290.0
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (625)
.+..+..+|.++..+|++++|++.|++++++ +|....++.++|.+|..+|++++|+.++++++++.+....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567888999999999999999999999986 5667788999999999999999999999999886332110
Q ss_pred H-HHHHHHHHHHhHHHHHH--hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCH
Q 006937 152 A-AECLAIVLTDLGTSLKL--AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE---LMQYDTALGCYEKAALERPMYA 225 (625)
Q Consensus 152 ~-~~~~a~~~~~l~~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~~~~~ 225 (625)
. ....+.++..+|..+.. .+++++|+.+|+++++++|+++.++..++.++.. .++.++|++.++++++++|++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 0 00012335666665554 4579999999999999999999999999988654 5778899999999999999999
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHH
Q 006937 226 EAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301 (625)
Q Consensus 226 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 301 (625)
.++..+|..+.. .+++++|+.++++++...|.....+..++.++. ..|++++|+..++++++.+|++..
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~-------~~~~~~~A~~~~~~al~~~p~~~~ 282 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR-------RKDEPDKAIELLKKALEYIPNNAY 282 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH-------HTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-------HcCchHHHHHHHHHHHHhCCChHH
Confidence 999999877665 467889999999999999998876665555554 467999999999999999999999
Q ss_pred HHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006937 302 AMYNLGVAYGEM-------------------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (625)
Q Consensus 302 ~~~~la~~~~~~-------------------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (625)
++..+|.+|... +.+++|+..+++++..+|.+..++..+|.++...|++++|+.+|+++++
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999988643 3467899999999999999999999999999999999999999999999
Q ss_pred cCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 363 IKPNFSQ---SLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 363 ~~~~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
+.|++.. ++..+|.+ +...|++++|+..|++++++.|++...... ...+...++++++.+|+++.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHHHHCC-CTTH
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHHHhCCCCHHH
Confidence 9887644 45667754 457899999999999999999997654332 244567888999999999998
Q ss_pred hhhHHHHhhhccCCCchHHHHHH
Q 006937 439 GQNRLLAMNYINEGHDDKLFEAH 461 (625)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~ 461 (625)
+.++ +..|...|+.+++.+.+
T Consensus 433 ~~~L--G~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 433 LHVL--AFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHHH--HHHHHHHHHCC------
T ss_pred HHHH--HHHHHHcCCHHHHHHHH
Confidence 8774 55555556555554433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=265.25 Aligned_cols=292 Identities=17% Similarity=0.188 Sum_probs=231.8
Q ss_pred HHHHhcCHHHHHH-HHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH
Q 006937 91 CLQMQNMGRLAFD-SFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (625)
Q Consensus 91 ~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~ 165 (625)
++...|++++|+. .|++++...|+++ ..++.+|.++...|++++|+..|+++++..|++... +..+|.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~ 106 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA-------WQYLGT 106 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH-------HHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHH
Confidence 4455677788887 7777777777653 457777888888888888888888888887777655 666777
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------
Q 006937 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC---------------- 229 (625)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------------- 229 (625)
++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.+...+.
T Consensus 107 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 107 TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred HHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 7777788888888888888888888888888888888888888888888888887777665554
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 230 NMGVIYKNRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307 (625)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 307 (625)
.++.++ ..|++++|+..|+++++..|. ....+. .+|.++...|++++|+..+++++..+|+++.++..+|
T Consensus 187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 258 (368)
T 1fch_A 187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQC-------GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 258 (368)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 456665 888999999999999998888 554444 4445555567899999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----------HHHHHHHHH
Q 006937 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-----------SQSLNNLGV 376 (625)
Q Consensus 308 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~la~ 376 (625)
.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++++.|++ ..++..+|.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 338 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887 889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 006937 377 VYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~ 397 (625)
++..+|++++|..+++++++.
T Consensus 339 ~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 339 ALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHhCChHhHHHhHHHHHHH
Confidence 999999999999998877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=260.30 Aligned_cols=291 Identities=20% Similarity=0.162 Sum_probs=248.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (625)
Q Consensus 137 ~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 216 (625)
..+.+.+...+.++.. -...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 48 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 48 SASEKGYYFHTENPFK---DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp -----CCCCCSSCTTT---TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhcccCCccc---chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555544321 0122778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhH---HHHHHHhchhhhhcCCHHHHHHHHHHHH
Q 006937 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM---AIALTDLGTKVKLEGDINQGVAYYKKAL 293 (625)
Q Consensus 217 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l 293 (625)
+++.+|++..++..+|.++...|++++|+..|+++++..|++...+..+ +.++..+|.++...|++++|+..+++++
T Consensus 125 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 125 CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876655544 5566677888888999999999999999
Q ss_pred hhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 006937 294 YYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (625)
Q Consensus 294 ~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (625)
+.+|. ++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.+|+++++++|+++.++
T Consensus 205 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 284 (365)
T 4eqf_A 205 HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284 (365)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH
Confidence 99999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
..+|.++...|++++|+.+|++++++.|+ +..+|..++.++..+|+.+.|....++.+.
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999999999999999999999999876 367899999999999999998887766443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-27 Score=243.65 Aligned_cols=370 Identities=16% Similarity=0.090 Sum_probs=316.7
Q ss_pred cchHhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhcCCCcHH
Q 006937 46 FEGKDALSYANILRS----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM----QNMGRLAFDSFSEAVKLDPQNAC 117 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 117 (625)
.++..++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+..|+++.+. .++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 457788999999999 99999999999999875 588999999999999 89999999999999875 5789
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH----hCChHHHHHHHHHHHhhCCC
Q 006937 118 AHTHCGILYKD----EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDPH 189 (625)
Q Consensus 118 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~~~ 189 (625)
++..+|.+|.. .+++++|+.+|+++++. .+..+ +..+|.++.. .+++++|+.+|+++.+. .
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a-------~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 217 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWS-------CNQLGYMYSRGLGVERNDAISAQWYRKSATS--G 217 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH-------HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--C
Confidence 99999999998 88999999999999986 34444 7788888887 89999999999999875 5
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHH
Q 006937 190 YAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIA 261 (625)
Q Consensus 190 ~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 261 (625)
++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++.+. .++.+
T Consensus 218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a 293 (490)
T 2xm6_A 218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDG 293 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHH
Confidence 68999999999997 89999999999999876 568899999999999 99999999999999876 44555
Q ss_pred HhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHH
Q 006937 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML---KFDMAIVFYELAFHFNPHCAEACN 338 (625)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~ 338 (625)
...++.++.... ....+++++|+.+|+++.+. .++.+++.+|.++...| ++++|+.+|+++++. .++.+++
T Consensus 294 ~~~Lg~~y~~~~--~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 367 (490)
T 2xm6_A 294 QYYLAHLYDKGA--EGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQF 367 (490)
T ss_dssp HHHHHHHHHHCB--TTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHcCC--CCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHH
Confidence 555554444320 01128999999999999986 56789999999999877 899999999999987 6799999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---cHHHHHH
Q 006937 339 NLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPT---YAEAYNN 407 (625)
Q Consensus 339 ~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~ 407 (625)
.+|.+|.. .+++++|+.+|+++.+. .++.++.++|.+|.. .+++++|..+|+++++..|+ ++.+..+
T Consensus 368 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 368 NLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 99999999 89999999999999986 468999999999999 89999999999999999954 8889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 006937 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (625)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (625)
++.++.. +.+.|.+..++.++..|+...+....+.
T Consensus 446 l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~~~~~l~ 480 (490)
T 2xm6_A 446 EKKLTAK--QLQQAELLSQQYIEKYAPEAWARMQKLK 480 (490)
T ss_dssp HTTSCHH--HHHHHHHHHHHHHHHHCHHHHHHHHHHS
T ss_pred HHhcCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988764 4566666667777666776666554433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-27 Score=247.04 Aligned_cols=413 Identities=11% Similarity=0.010 Sum_probs=319.2
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
.+.+.+.|+.++.. ...|++++|...|+++++..|.+...|..++..+...|++++|...|++++...| +...|..++
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~ 86 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYL 86 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHH
Confidence 34678889999984 7899999999999999999999999999999999999999999999999999999 677888888
Q ss_pred H-HHHHcCCHHHHHH----HHHHHHhc---CCCCHHHHHHHHHHHHHhHHHHHH---------hCChHHHHHHHHHHHhh
Q 006937 124 I-LYKDEGRLVEAAE----SYHKALSA---DPSYKPAAECLAIVLTDLGTSLKL---------AGNTQDGIQKYYEALKI 186 (625)
Q Consensus 124 ~-~~~~~g~~~~A~~----~~~~al~~---~~~~~~~~~~~a~~~~~l~~~~~~---------~~~~~~A~~~~~~~l~~ 186 (625)
. +....|++++|.+ .|++++.. +|.+... |...+..... .|++++|..+|+++++
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~-------w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~- 158 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQI-------WVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV- 158 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHH-------HHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHH-------HHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence 5 4456688877765 78888764 3444444 3333333333 6889999999999999
Q ss_pred CCCCH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHHh-----CCCC-------HHHHHHHHH
Q 006937 187 DPHYA--PAYYNLGVVY-------------SELMQYDTALGCYEK------AALE-----RPMY-------AEAYCNMGV 233 (625)
Q Consensus 187 ~~~~~--~~~~~la~~~-------------~~~~~~~~A~~~~~~------al~~-----~~~~-------~~~~~~la~ 233 (625)
.|... ..|....... ...+++.+|...+.. .++. .|.. ...|.....
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 56542 3333322221 134567778777765 3332 2321 234444333
Q ss_pred HHHHc----CCH----HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHH-------HHHHHHHHHHh-hCC
Q 006937 234 IYKNR----GDL----ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN-------QGVAYYKKALY-YNW 297 (625)
Q Consensus 234 ~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~A~~~~~~~l~-~~~ 297 (625)
..... ++. ..++..|++++...|.++..+..++..+..........|+++ +|+..|+++++ ..|
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 22221 232 478899999999999999988888887765332222356766 99999999997 799
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 006937 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (625)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (625)
++..+|..++.++...|++++|...|+++++..|.++ .+|..++.++...|++++|...|+++++..|.....+...+.
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 9999999999999999999999999999999999985 699999999999999999999999999999988887777776
Q ss_pred H-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----hhhhHHHHhhhccC
Q 006937 377 V-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN----AGQNRLLAMNYINE 451 (625)
Q Consensus 377 ~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~ 451 (625)
+ +...|++++|..+|+++++..|+++.+|..++.++...|+.++|...|+++++..|.++. .+...+ ......
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~--~~e~~~ 476 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL--AFESNI 476 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH--HHHHHS
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH--HHHHHc
Confidence 6 446999999999999999999999999999999999999999999999999999887665 332221 112345
Q ss_pred CCchHHHHHHHHHHHHH
Q 006937 452 GHDDKLFEAHRDWGKRF 468 (625)
Q Consensus 452 ~~~~~~~~~~~~~~~~~ 468 (625)
|+.+......++....+
T Consensus 477 G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 477 GDLASILKVEKRRFTAF 493 (530)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 66666554444433333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-29 Score=243.81 Aligned_cols=277 Identities=19% Similarity=0.205 Sum_probs=253.9
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 239 (625)
++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHH------HHHHHh-ch-hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 240 DLESAIACYERCLAVSPNFEIAKNNMA------IALTDL-GT-KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (625)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~------~~~~~l-~~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 311 (625)
++++|+..++++++..|.+......+. .....+ +. ++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 999999999999999998765544331 111122 33 4667889999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (625)
Q Consensus 312 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (625)
..|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..+
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 392 EKAIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 392 ~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
+++++..|+ +..++..+|.++..+|++++|...++++++..|++.
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 999999999 899999999999999999999999999888776544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=250.46 Aligned_cols=280 Identities=18% Similarity=0.165 Sum_probs=228.9
Q ss_pred HHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHH
Q 006937 103 DSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178 (625)
Q Consensus 103 ~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~ 178 (625)
..+.+.+...+.++ ..++.+|..+...|++++|+..|+++++.+|++... +..+|.++...|++++|+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~lg~~~~~~g~~~~A~~ 120 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEA-------WQFLGITQAENENEQAAIV 120 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHH-------HHHHHHHHHHCCCHHHHHH
Confidence 34444444444443 448888889999999999999999999888887665 7777888888889999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHcCCHHHHHHHH
Q 006937 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM----------GVIYKNRGDLESAIACY 248 (625)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l----------a~~~~~~g~~~~A~~~~ 248 (625)
.|+++++.+|++..++..+|.++...|++++|+..++++++..|++...+..+ |.++...|++++|+.+|
T Consensus 121 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999998899999999999999999999999999998888766555544 88999999999999999
Q ss_pred HHHHhcCCC--cHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006937 249 ERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (625)
Q Consensus 249 ~~al~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 326 (625)
+++++..|+ +...+.. +|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..|+++
T Consensus 201 ~~al~~~p~~~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTG-------LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHSCSSCCHHHHHH-------HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCcCccCHHHHHH-------HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988 6555444 4445555679999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------------FSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (625)
Q Consensus 327 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (625)
++.+|++..++..+|.++...|++++|+.+|++++++.|+ ...++..++.++..+|+.+.|....++.
T Consensus 274 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 274 LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999876 3678999999999999999998877764
Q ss_pred HH
Q 006937 395 IA 396 (625)
Q Consensus 395 l~ 396 (625)
+.
T Consensus 354 l~ 355 (365)
T 4eqf_A 354 LD 355 (365)
T ss_dssp CG
T ss_pred HH
Confidence 43
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=243.00 Aligned_cols=261 Identities=15% Similarity=0.074 Sum_probs=186.4
Q ss_pred HHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHH
Q 006937 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAESYHKALSADPSYKPAA 153 (625)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~ 153 (625)
+..+|++..++..+|.++...|++++|+..|+++++++|++..+|..+|.++...|+ +++|+..|+++++++|++..+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a- 168 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV- 168 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH-
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH-
Confidence 455677778888888888888888888888888888888888888888888888886 888888888888888887766
Q ss_pred HHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006937 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233 (625)
Q Consensus 154 ~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 233 (625)
+..+|.++...|++++|+..|+++++++|++..+|+++|.++...|++++|+.+|+++++++|.+..+|+++|.
T Consensus 169 ------~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 169 ------WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242 (382)
T ss_dssp ------HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66677777777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHH-cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 006937 234 IYKN-RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312 (625)
Q Consensus 234 ~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 312 (625)
++.. .|..++|+ .+.++.+|++++.++|++..+|+.++.++..
T Consensus 243 ~l~~l~~~~~eA~------------------------------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 243 VISNTTGYNDRAV------------------------------------LEREVQYTLEMIKLVPHNESAWNYLKGILQD 286 (382)
T ss_dssp HHHHTTCSCSHHH------------------------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred HHHHhcCcchHHH------------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 8877 44435553 1222344445555555555555555555555
Q ss_pred cC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HccCCCCHHHHHHHHHHHH
Q 006937 313 ML--KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---------NLDKAVECYQMA-LSIKPNFSQSLNNLGVVYT 379 (625)
Q Consensus 313 ~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~a-l~~~~~~~~~~~~la~~~~ 379 (625)
.| ++++|++.++++ +.+|++..++..+|.++..+| .+++|+++|+++ ++++|.....|..++..+.
T Consensus 287 ~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 287 RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 55 455666665555 555666666666666665543 135666666666 5666666666665555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=243.81 Aligned_cols=252 Identities=12% Similarity=0.058 Sum_probs=189.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHhh
Q 006937 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAKNN 264 (625)
Q Consensus 186 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~ 264 (625)
.+|++..++..+|.++...|++++|+..++++++++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..++..
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3455555666666666666666666666666666666666666666666666664 666666666666666665555544
Q ss_pred HHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 006937 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344 (625)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 344 (625)
++.++..+ |++++|+..|+++++++|++..+|+.+|.++...|++++|+..|+++++++|++..+|+++|.++
T Consensus 172 ~g~~~~~~-------g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 172 RRVLVEWL-------RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHH-------TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHc-------cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44444443 46666666666666677777788888888888888889999999999999999999999999988
Q ss_pred HH-cCCHHHH-----HHHHHHHHccCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006937 345 KD-RDNLDKA-----VECYQMALSIKPNFSQSLNNLGVVYTVQG--KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (625)
Q Consensus 345 ~~-~~~~~~A-----~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (625)
.. .|..++| +.+|+++++++|++..+|.+++.++...| ++++|++.++++ +.+|++..++..+|.+|..+|
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence 88 5554777 58899999999999999999999999888 689999999888 889999999999999998875
Q ss_pred --------C-HHHHHHHHHHH-HhcCCCChhhhhhHHHH
Q 006937 417 --------S-ISLAIDAYEQC-LKIDPDSRNAGQNRLLA 445 (625)
Q Consensus 417 --------~-~~~A~~~~~~a-l~~~p~~~~~~~~~~~~ 445 (625)
+ +++|+.+|+++ ++++|.....|..+...
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 362 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 2 58999999999 89999988887765433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-28 Score=236.15 Aligned_cols=277 Identities=18% Similarity=0.204 Sum_probs=244.6
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
...+.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 35677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH------HHHHHh-HH-HHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLA------IVLTDL-GT-SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a------~~~~~l-~~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 197 (625)
+...|++++|+..++++++..|.+......+. .....+ +. ++...|++++|+..++++++..|.+..++..+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 178 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL 178 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 99999999999999999999998876533320 001112 33 47778999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhh
Q 006937 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (625)
Q Consensus 198 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (625)
|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++...+..++.+ +.
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-------~~ 251 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS-------YS 251 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-------HH
Confidence 99999999999999999999999999999999999999999999999999999999999987765555554 45
Q ss_pred hcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 006937 278 LEGDINQGVAYYKKALYYNWH------------YADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 329 (625)
..|++++|+..+++++...|. ...++..++.++...|++++|...++++++.
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 567999999999999999998 6788888888888888888888888776654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-26 Score=237.42 Aligned_cols=375 Identities=13% Similarity=0.012 Sum_probs=293.3
Q ss_pred HHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006937 71 YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (625)
Q Consensus 71 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (625)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..|.+..+|..++..+...|++++|...|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 678899999999999999984 7899999999999999999999999999999999999999999999999999999 45
Q ss_pred HHHHHHHHHHHHhHH-HHHHhCChHHHHH----HHHHHHhh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHH
Q 006937 151 PAAECLAIVLTDLGT-SLKLAGNTQDGIQ----KYYEALKI---DPHYAPAYYNLGVVYSE---------LMQYDTALGC 213 (625)
Q Consensus 151 ~~~~~~a~~~~~l~~-~~~~~~~~~~A~~----~~~~~l~~---~~~~~~~~~~la~~~~~---------~~~~~~A~~~ 213 (625)
..+ ..++. .....|++++|.+ .|++++.. +|.+..+|...+..... .|++++|..+
T Consensus 80 ~lw-------~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 80 DLW-------KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp HHH-------HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 553 33332 2234577776665 77877764 56778899888887765 7899999999
Q ss_pred HHHHHHhCCCCH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHhc-----CCCcHHHHhhHHH
Q 006937 214 YEKAALERPMYA--EAYCNMGVIY-------------KNRGDLESAIACYER------CLAV-----SPNFEIAKNNMAI 267 (625)
Q Consensus 214 ~~~al~~~~~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~~~~~~~~~~~~~ 267 (625)
|+++++ .|... ..+....... ...+++..|...+.+ .++. .|...........
T Consensus 153 y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 153 YQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 999999 56542 3333222221 124567778777665 4432 2221100000011
Q ss_pred HHHHhchhhhh----cCC----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHH
Q 006937 268 ALTDLGTKVKL----EGD----INQGVAYYKKALYYNWHYADAMYNLGVAYGE-------MLKFD-------MAIVFYEL 325 (625)
Q Consensus 268 ~~~~l~~~~~~----~~~----~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~ 325 (625)
.+......... .++ ..+++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 11111111111 122 2578899999999999999999999999986 79987 99999999
Q ss_pred HHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 006937 326 AFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 326 al~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
+++ ..|++..+|..+|.++...|++++|...|+++++..|.++ .+|..++.++.+.|++++|...|+++++..|....
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 997 8999999999999999999999999999999999999985 69999999999999999999999999999988877
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHH
Q 006937 404 AYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457 (625)
Q Consensus 404 ~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 457 (625)
.+...+.+ +...|++++|...|+++++.+|+++.++.++. ..+...|+.+++
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~--~~~~~~g~~~~A 444 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI--DYLSHLNEDNNT 444 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHH--HHHTTTTCHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHH--HHHHhCCCHhhH
Confidence 77776665 44699999999999999999999998886643 334456665554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=236.49 Aligned_cols=381 Identities=15% Similarity=0.078 Sum_probs=279.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 006937 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (625)
..+|..+++.|++++|+.+|+++.+. +++.+++.+|.++...|+. ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56899999999999999999999876 5788999999999999999 9999999999976 77899999997777
Q ss_pred cC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChH---HHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 129 EG-----RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVV 200 (625)
Q Consensus 129 ~g-----~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~---~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (625)
.+ ++++|+.+|+++++..+. .+ ++.+|.++...+... ++.+.+.++.. +.++.+++.+|.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~--~A-------~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~ 150 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG--NT-------LIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLL 150 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS--SC-------HHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH--HH-------HHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence 66 889999999999985443 34 566666666655544 34555555443 3457799999999
Q ss_pred HHHcCCHHHHHH----HHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhc
Q 006937 201 YSELMQYDTALG----CYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (625)
Q Consensus 201 ~~~~~~~~~A~~----~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~ 273 (625)
|...+.++++.. +++.+...+| .+++.+|.+|...| ++++|+.+|+++.+..+.....+..++.++....
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 999996555444 4444444444 49999999999999 9999999999999999988766566666653311
Q ss_pred hhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--
Q 006937 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA-Y--GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-- 348 (625)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-- 348 (625)
...+++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+. .++.+++++|.+|. .|
T Consensus 228 ---~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 228 ---LGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp ---GSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSS
T ss_pred ---CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCC
Confidence 22479999999999998 8999999999999 4 5789999999999999865 48999999999998 55
Q ss_pred ---CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Q 006937 349 ---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGS 417 (625)
Q Consensus 349 ---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 417 (625)
++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.++||.+|.. ..+
T Consensus 299 ~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp SCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCC
T ss_pred CCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999 8999999999999987 4499999999999987 4567889999999985 569
Q ss_pred HHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHHHHHHHH
Q 006937 418 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 467 (625)
Q Consensus 418 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (625)
+.+|..+|+++.+..+. .+...+......+...+..+.....++|...
T Consensus 374 ~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999997654 3443332333333333334444555566554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-27 Score=221.95 Aligned_cols=248 Identities=17% Similarity=0.147 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (625)
++.++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++ .|.+.. ..+.++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~---~~~~~~~ 78 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK---AKSADFE 78 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT---CCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh---HHHHHHH
Confidence 456778888888888888888888888888888888888888888888888888888888888 443322 1244566
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 006937 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (625)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 350 (625)
.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|......+++
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 67777777889999999999999999999999999999999999999999999999999999999999999555556699
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CC-----cHHHHHHHHHHHHHcCCHH
Q 006937 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAAN---PT-----YAEAYNNLGVLYRDAGSIS 419 (625)
Q Consensus 351 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~ 419 (625)
++|+..|+++++.+|++..++..+|.++...|+ +++|+..++++++.. |+ ...++..+|.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 999999999999885 44 2478999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhhhhH
Q 006937 420 LAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 420 ~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
+|+.+|+++++++|+++.++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHh
Confidence 99999999999999999887664
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=219.37 Aligned_cols=252 Identities=16% Similarity=0.164 Sum_probs=203.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH----HHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA----CAHTHC 122 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l 122 (625)
+++.++..|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++ .|.++ .++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999999999999999 44443 458999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 202 (625)
|.++...|++++|+..|+++++.+|.+... +..+|.++...|++++|+..|+++++.+|.++.++..+|...+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDM-------YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHH-------HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHH-------HHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999998765 7888899999999999999999999999999999999995555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHH-HhhHHHHHHHhchhhhh
Q 006937 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD---LESAIACYERCLAVSPNFEIA-KNNMAIALTDLGTKVKL 278 (625)
Q Consensus 203 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~l~~~~~~ 278 (625)
..+++++|+..|+++++..|++..++..+|.++...|+ +++|+..|+++++.....+.. ...+..++..+|.++..
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 56699999999999999999999999999999999999 999999999999876332211 11222333333433333
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNL 306 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l 306 (625)
.|++++|+.+++++++.+|++..++-.+
T Consensus 234 ~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 4444444444444444444444433333
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-26 Score=214.83 Aligned_cols=226 Identities=18% Similarity=0.192 Sum_probs=140.2
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 006937 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-------AEAYC 229 (625)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~ 229 (625)
+..+..+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++..|.+ +.++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4457777888888888888888888888877 777788888888888888888888888888776655 67777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (625)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 309 (625)
.+|.++...|++++|+..|++++...|.. .++.. .|++++|+..+++++..+|....++..+|.+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------DILTK-------LRNAEKELKKAEAEAYVNPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH--------HHHHH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh--------HHHHH-------HhHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 78888888888888888888777776651 11222 2345555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389 (625)
Q Consensus 310 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 389 (625)
+...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++...|++++|+.
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555444444444444444444444444444
Q ss_pred HHHHHHHhC
Q 006937 390 MIEKAIAAN 398 (625)
Q Consensus 390 ~~~~al~~~ 398 (625)
+++++++++
T Consensus 229 ~~~~a~~~~ 237 (258)
T 3uq3_A 229 TLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 444444444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=216.52 Aligned_cols=243 Identities=18% Similarity=0.206 Sum_probs=224.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH
Q 006937 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (625)
Q Consensus 190 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 269 (625)
.+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|+..........++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 36788999999999999999999999999999 88999999999999999999999999999998876533333446677
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (625)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 349 (625)
..+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 77888888899999999999999999987 5667788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (625)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (625)
+++|+.+|+++++.+|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++..+|++++|+.+|++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC------CCChhhhhh
Q 006937 430 KID------PDSRNAGQN 441 (625)
Q Consensus 430 ~~~------p~~~~~~~~ 441 (625)
+++ |++..++..
T Consensus 235 ~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp HHHHHHHTTTTHHHHHHH
T ss_pred HhChhhcCCCchHHHHHH
Confidence 999 777666544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-25 Score=212.91 Aligned_cols=261 Identities=8% Similarity=-0.040 Sum_probs=174.3
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH
Q 006937 90 ICLQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (625)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~ 168 (625)
...+..|+|.+|+..++++...+|++ .+....++++|...|++++|+..++.. +|.. ..++..++..+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~-------~~a~~~la~~~~ 76 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE-------LQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChh-------HHHHHHHHHHHc
Confidence 34566777777777777766666665 346666777777777777777655441 2211 123555667777
Q ss_pred HhCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 169 LAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (625)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 246 (625)
..++.++|++.+++++.. +|+++.+++.+|.++...|++++|++.+++ |.+..++..+|.++..+|++++|+.
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777888888888887765 588888888888888888888888888887 7888888889999999999999999
Q ss_pred HHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006937 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (625)
Q Consensus 247 ~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 326 (625)
.|+++++.+|++... .++..+..+ ....|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++
T Consensus 152 ~l~~~~~~~p~~~~~--~l~~a~~~l---~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 152 ELKKMQDQDEDATLT--QLATAWVSL---AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHCTTCHHH--HHHHHHHHH---HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhCcCcHHH--HHHHHHHHH---HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988888876422 222222221 112355666666666666666666666666666666666666666666666
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHccCCCCHHH
Q 006937 327 FHFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIKPNFSQS 370 (625)
Q Consensus 327 l~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~~~~~~~ 370 (625)
++.+|+++.++.++|.++...|+..+ +..+++++++++|+++.+
T Consensus 227 l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 227 LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 66666666666666666666666544 345556666666665544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-26 Score=208.32 Aligned_cols=199 Identities=19% Similarity=0.165 Sum_probs=178.3
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q 006937 126 YKDE-----------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (625)
Q Consensus 126 ~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 194 (625)
+... |++++|+..|+++++.+|++... +..+|.++...|++++|+..|+++++++ +++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~-------~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 154 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL-------HLQRGLVYALLGERDKAEASLKQALALE-DTPEIR 154 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHH-------HHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHH
Confidence 9999 99999999999999999999876 7788888999999999999999999999 999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (625)
Q Consensus 195 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (625)
..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998763
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-26 Score=206.96 Aligned_cols=211 Identities=21% Similarity=0.174 Sum_probs=151.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 006937 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (625)
Q Consensus 188 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (625)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++...+..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 55667777777778888888888888888877777777777778877777777777777777777777776665555555
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (625)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 347 (625)
++...+.. .+. .....|++++|+..|+++++++|+++.++..+|.++...
T Consensus 82 ~~~~~~~~---~~~---------------------------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 82 AYVALYRQ---AED---------------------------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131 (217)
T ss_dssp HHHHHHHT---CSS---------------------------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhhh---hhh---------------------------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 54443100 000 112238888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
|++++|+..|+++++++ +++.++.++|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|++
T Consensus 132 g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred CChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88888888888888888 88888888888888888888888888888888888888888888888888888888888877
Q ss_pred HH
Q 006937 428 CL 429 (625)
Q Consensus 428 al 429 (625)
+-
T Consensus 211 ~~ 212 (217)
T 2pl2_A 211 EH 212 (217)
T ss_dssp --
T ss_pred Hh
Confidence 64
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-25 Score=212.34 Aligned_cols=260 Identities=12% Similarity=0.018 Sum_probs=228.4
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006937 166 SLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (625)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 244 (625)
..+..|++++|+..+++....+|++ .+....++++|..+|++++|+..++. .+|....++..++..+...++.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 4556799999999999887777776 46778899999999999999998866 2555678888999999999999999
Q ss_pred HHHHHHHHhc--CCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006937 245 IACYERCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (625)
Q Consensus 245 ~~~~~~al~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (625)
++.+++++.. +|++...+..++.+ +...|++++|+..+++ |.+..++..+|.++..+|++++|+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~-------~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASI-------YFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHH-------HHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHH-------HHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999876 58887665555544 4457899999999998 88999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 323 YELAFHFNPHCAEACNNLG--VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 323 ~~~al~~~~~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
++++++.+|++.......+ .++...|++++|+..|+++++..|+++.++.++|.++..+|++++|+..|+++++.+|+
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999875544434 44445689999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCChhhhh
Q 006937 401 YAEAYNNLGVLYRDAGSISL-AIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~ 440 (625)
++.++.++|.++...|+..+ +.++++++++++|+++.+..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999976 57899999999999987653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=233.71 Aligned_cols=298 Identities=22% Similarity=0.282 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh------CCCCH
Q 006937 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYA 191 (625)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------~~~~~ 191 (625)
.+..+|.++...|++++|+..|+++++..|.+... .+.++..+|.++...|++++|+..+++++.. .|...
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT---LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34444444444555555555555554444443321 2233444555555555555555555554443 22234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHH
Q 006937 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGD--------------------LESAI 245 (625)
Q Consensus 192 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A~ 245 (625)
.++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 566677777777777777777777776654432 4577788888888888 88888
Q ss_pred HHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCCHHHH
Q 006937 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 246 ~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~~~~~~A 319 (625)
.++++++...+... .....+.++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|
T Consensus 168 ~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 168 DFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 88888776532211 1123455677777777778888888888888887755432 3788888888888888888
Q ss_pred HHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHcCCHHHH
Q 006937 320 IVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAA 387 (625)
Q Consensus 320 ~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A 387 (625)
+.++++++.+.+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888776554 6677888888888888888888888888774433 55777888888888888888
Q ss_pred HHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHH
Q 006937 388 AEMIEKAIAANP------TYAEAYNNLGVLYRDAGSIS 419 (625)
Q Consensus 388 ~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~ 419 (625)
+.++++++++.+ ....++..+|.++...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 888888887632 23567778888888777664
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=234.10 Aligned_cols=304 Identities=20% Similarity=0.209 Sum_probs=225.1
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH----HHHHhHHHHHHHhcCHHHHHHHHHHHHhc------CCCc
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQN 115 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 115 (625)
.....++..|..++..|++++|+..|+++++..|.+. .++..+|.++...|++++|+..+++++.. .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4567889999999999999999999999999999884 68899999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC--------------------hHH
Q 006937 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN--------------------TQD 175 (625)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~--------------------~~~ 175 (625)
..++..+|.++...|++++|+..+++++...+.... ....+.++..+|.++...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 778999999999999999999999999987664322 23345668888888888888 888
Q ss_pred HHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Q 006937 176 GIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLES 243 (625)
Q Consensus 176 A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~ 243 (625)
|+..+++++.. .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88888888776 23335567778888888888888888888887664432 2367777777777777777
Q ss_pred HHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006937 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323 (625)
Q Consensus 244 A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 323 (625)
|+.++++++...+.... .... ..++..+|.++...|++++|+..+
T Consensus 246 A~~~~~~al~~~~~~~~-~~~~----------------------------------~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKD-RAVE----------------------------------AQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHH----------------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC-chHH----------------------------------HHHHHHHHHHHHHhCcHHHHHHHH
Confidence 77777777765443211 1111 334555666666666666666666
Q ss_pred HHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CCHHHHHHHHHHHHHcCCHH
Q 006937 324 ELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMD 385 (625)
Q Consensus 324 ~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~ 385 (625)
++++++.+.. ..++..+|.++...|++++|+.++++++++.+ ....++..+|.++...|+..
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 6666553322 55666777777777777777777777776632 22456777777777777653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=225.63 Aligned_cols=278 Identities=23% Similarity=0.263 Sum_probs=187.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh------CCCCHHHH
Q 006937 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAY 194 (625)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~ 194 (625)
.+|..+...|++++|+..|+++++..|++... .+.++..+|.++...|++++|+..++++++. .+....++
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT---LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 34444444444444444444444444433221 1223444444444444444444444444443 23345667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHH
Q 006937 195 YNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGD-----------------LESAIACYERC 251 (625)
Q Consensus 195 ~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~a 251 (625)
..+|.++...|++++|+.+++++++. .+....++..+|.++...|+ +++|+.+++++
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77777777777777777777777766 44556678888888888888 67777776666
Q ss_pred HhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 006937 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331 (625)
Q Consensus 252 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 331 (625)
+++.+... + .+....++..+|.++...|++++|+.++++++++.+
T Consensus 210 l~~~~~~~---------------------~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 210 LKLMRDLG---------------------D--------------RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHT---------------------C--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC---------------------C--------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 55432110 0 011234566777777777777777777777777654
Q ss_pred CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006937 332 HC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (625)
Q Consensus 332 ~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (625)
.. ..++..+|.++...|++++|+.+|++++++.+.. ..++..+|.++...|++++|+.++++++...+
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 32 3377888888888888888888888888876643 56888999999999999999999999988744
Q ss_pred C------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 400 T------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 400 ~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
. ...++..+|.+|..+|++++|..+|++++++.+...
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 3 256899999999999999999999999999987643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=223.43 Aligned_cols=281 Identities=23% Similarity=0.280 Sum_probs=223.8
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 006937 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAE 226 (625)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~ 226 (625)
+..+..+|..+...|++++|+..|+++++..|++. .++..+|.++...|++++|+.+++++++. .+....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44577899999999999999999999999999986 58899999999999999999999999987 566788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCC-----------------HHHHHHHH
Q 006937 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-----------------INQGVAYY 289 (625)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~ 289 (625)
++..+|.++...|++++|+.+++++++..+... .....+.++..+|.++...|+ +++|+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999998743211 112335566666766666777 55555555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-
Q 006937 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS- 368 (625)
Q Consensus 290 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~- 368 (625)
+++++..+ .. ...+....++..+|.++...|++++|+.++++++++.+...
T Consensus 207 ~~al~~~~---------------------------~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 207 QENLKLMR---------------------------DL-GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHH---------------------------HH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH---------------------------Hc-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 55443211 10 01122356889999999999999999999999999876533
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 006937 369 -----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (625)
Q Consensus 369 -----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (625)
.++..+|.++...|++++|+.++++++...+.. ..++..+|.++..+|++++|+.+|++++++.++...
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 389999999999999999999999999987643 678999999999999999999999999998665432
Q ss_pred ----hhhhHHHHhhhccCCCchHHHHHHHHHHH
Q 006937 438 ----AGQNRLLAMNYINEGHDDKLFEAHRDWGK 466 (625)
Q Consensus 438 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (625)
+.....++..|...|+.++..+..++...
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22333467778888888877766554443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=215.34 Aligned_cols=276 Identities=25% Similarity=0.302 Sum_probs=235.9
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Q 006937 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAY 228 (625)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~ 228 (625)
.+...|..+...|++++|+..|+++++..|.+ ..++..+|.++...|++++|+.+++++++. .+....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 36778999999999999999999999999998 467889999999999999999999999876 44457789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCC--------------------HHHHHHH
Q 006937 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAY 288 (625)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~ 288 (625)
..+|.++...|++++|+..++++++..+.... ....+.++..+|.++...|+ +++|+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999987654321 12345667777777777888 9999999
Q ss_pred HHHHHhhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 006937 289 YKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVEC 356 (625)
Q Consensus 289 ~~~~l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~ 356 (625)
+++++... +....++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+.+
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99988762 3335689999999999999999999999999875432 44899999999999999999999
Q ss_pred HHHHHccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHH
Q 006937 357 YQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDA 424 (625)
Q Consensus 357 ~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 424 (625)
+++++++.+.. ..++..+|.++...|++++|+.+++++++..+.. ..++..+|.+|...|++++|..+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999886654 6789999999999999999999999999875432 56889999999999999999999
Q ss_pred HHHHHhcCCCC
Q 006937 425 YEQCLKIDPDS 435 (625)
Q Consensus 425 ~~~al~~~p~~ 435 (625)
|++++++.++.
T Consensus 326 ~~~a~~~~~~~ 336 (338)
T 3ro2_A 326 AEKHLEISREV 336 (338)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHhh
Confidence 99999998764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=201.16 Aligned_cols=218 Identities=18% Similarity=0.213 Sum_probs=185.7
Q ss_pred ccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 006937 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (625)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (625)
.....+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 34467888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 202 (625)
|.++...|++++|+..++++++..|.+... +..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDL-------FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 999999999999999999999999998765 7778888999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 006937 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (625)
Q Consensus 203 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (625)
..|++++|+..++++++..|.+..++..+|.++...|++++|+.+++++++..|++...+..++.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998876655443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-24 Score=216.42 Aligned_cols=354 Identities=18% Similarity=0.099 Sum_probs=261.6
Q ss_pred chHhHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhc-----CHHHHHHHHHHHHhcCCCcHHH
Q 006937 47 EGKDALSYANILRSRNKF---VDALALYEIVLEKDSGNVEAHIGKGICLQMQN-----MGRLAFDSFSEAVKLDPQNACA 118 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~ 118 (625)
+++.++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++...+ ++++|+.+|+++++. .++.+
T Consensus 34 ~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A 108 (452)
T 3e4b_A 34 YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNT 108 (452)
T ss_dssp CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSC
T ss_pred CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHH
Confidence 456677888888889988 9999999999976 7789999999777666 889999999999984 45668
Q ss_pred HHHHHHHHHHcCCHHH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHH----HHHHHHhhCCCCH
Q 006937 119 HTHCGILYKDEGRLVE---AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ----KYYEALKIDPHYA 191 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~----~~~~~l~~~~~~~ 191 (625)
++.+|.+|...+...+ +...+.++.... +..+ .+.+|.++...+.++++.. +++.+...+|
T Consensus 109 ~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--~~~a-------~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~--- 176 (452)
T 3e4b_A 109 LIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--YPEA-------GLAQVLLYRTQGTYDQHLDDVERICKAALNTTD--- 176 (452)
T ss_dssp HHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT--CTTH-------HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC--CHHH-------HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---
Confidence 9999999998776544 444555544332 2333 6778888888885555544 4444444444
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHHhh
Q 006937 192 PAYYNLGVVYSELM---QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKNN 264 (625)
Q Consensus 192 ~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 264 (625)
.+++.+|.+|...| ++++|+.+|+++.+..+.....++.+|.+|... +++++|+.+|+++. |.++.+...
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 49999999999999 999999999999999999999999999999776 79999999999998 788888888
Q ss_pred HHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhhCCCCHHHHHH
Q 006937 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML-----KFDMAIVFYELAFHFNPHCAEACNN 339 (625)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~ 339 (625)
++.++..- ...+++++|+.+|+++.+. .++.+++.+|.+|. .| ++++|+.+|+++. +.++.++++
T Consensus 254 Lg~~~~~~----~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~ 323 (452)
T 3e4b_A 254 LAQLLYDF----PELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYY 323 (452)
T ss_dssp HHHHHHHS----GGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHH
Confidence 77774421 1278999999999999865 48999999999998 55 9999999999999 899999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006937 340 LGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (625)
Q Consensus 340 la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (625)
+|.+|.. ..++++|+.+|+++.+. .++.+.+++|.+|.. ..++.+|..+|+++.+..+ ..+...++.+
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l 399 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQL 399 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 9999987 45999999999999874 668899999999985 5699999999999988654 5566666666
Q ss_pred HHHc--CCHHHHHHHHHHHHhcCCC
Q 006937 412 YRDA--GSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 412 ~~~~--g~~~~A~~~~~~al~~~p~ 434 (625)
...+ ++..+|....++..+..++
T Consensus 400 ~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 400 EAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccc
Confidence 5443 3556677777766654433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=210.64 Aligned_cols=284 Identities=20% Similarity=0.229 Sum_probs=210.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----HHHHHhHHHHHHHhcCHHHHHHHHHHHHhc------CCCcH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN----VEAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQNA 116 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 116 (625)
....++..|..++..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..++++++. .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 35678899999999999999999999999999998 468889999999999999999999999887 44557
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC--------------------hHHH
Q 006937 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN--------------------TQDG 176 (625)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~--------------------~~~A 176 (625)
.++..+|.++...|++++|+..++++++..+..... ...+.++..+|.++...|+ +++|
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 789999999999999999999999999876543221 2345668888888888888 8888
Q ss_pred HHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHH
Q 006937 177 IQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESA 244 (625)
Q Consensus 177 ~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A 244 (625)
+..+++++.. .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888887765 22234567777888888888888888888777654322 23667777777777777777
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006937 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (625)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (625)
+.++++++...+.... .... ..++..+|.++...|++++|+..++
T Consensus 243 ~~~~~~al~~~~~~~~-~~~~----------------------------------~~~~~~la~~~~~~g~~~~A~~~~~ 287 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKD-RAVE----------------------------------AQSCYSLGNTYTLLQDYEKAIDYHL 287 (338)
T ss_dssp HHHHHHHHHHHHHTTC-HHHH----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc-hhHH----------------------------------HHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777777655432210 0111 3455566666666666666666666
Q ss_pred HHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 006937 325 LAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (625)
Q Consensus 325 ~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (625)
+++...+.. ..++..+|.++...|++++|+.++++++++.+.
T Consensus 288 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 288 KHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 666653321 446677777777777888888777777776554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=184.71 Aligned_cols=172 Identities=24% Similarity=0.383 Sum_probs=166.5
Q ss_pred HHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (625)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 345 (625)
+.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.+..++..+|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 45677888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (625)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (625)
..++++.|+..+.++++..|++..++..+|.++..+|++++|++.|+++++.+|+++.++..+|.+|..+|++++|+.+|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChh
Q 006937 426 EQCLKIDPDSRN 437 (625)
Q Consensus 426 ~~al~~~p~~~~ 437 (625)
+++++++|+++.
T Consensus 165 ~~al~~~p~~a~ 176 (184)
T 3vtx_A 165 KKALEKEEKKAK 176 (184)
T ss_dssp HHHHHTTHHHHH
T ss_pred HHHHhCCccCHH
Confidence 999999998653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-23 Score=191.90 Aligned_cols=208 Identities=15% Similarity=0.102 Sum_probs=198.3
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 128 DEGRLVEAAESYHKALS--ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 205 (625)
..|++++|+..+++++. ..|.+... +..+|.++...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRV-------FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 99999999999999999 56655443 7788899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (625)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (625)
++++|+..++++++..|.+...+..++.++...|++++|..+++++++..|++....
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999987644
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-23 Score=194.35 Aligned_cols=213 Identities=22% Similarity=0.277 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 006937 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (625)
Q Consensus 192 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (625)
..++.+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++..|.+...+..++.++
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-- 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY-- 101 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH--
Confidence 344445555555555555555555555555555555555555555555555555555555444443322211111111
Q ss_pred hchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 006937 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351 (625)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 351 (625)
...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|+++
T Consensus 102 -----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 102 -----VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp -----HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred -----HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 112233333333333333333333444444444444555555555555555544444444445555555555555
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006937 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (625)
Q Consensus 352 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (625)
+|+..++++++..|++..++..+|.++...|++++|+.+++++++.+|++..++..++.+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 555555555544444444444445555444555555555555544444444444444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-22 Score=189.62 Aligned_cols=233 Identities=22% Similarity=0.322 Sum_probs=197.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAK 262 (625)
Q Consensus 187 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 262 (625)
+|.++.+++.+|.++...|++++|+.+|+++++ |.++.+++.+|.++.. .+++++|+.+|+++++.. +...
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a- 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG- 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH-
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH-
Confidence 466778888888888888888888888888887 6677888888888888 888888888888888774 3333
Q ss_pred hhHHHHHHHhchhhhh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCH
Q 006937 263 NNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCA 334 (625)
Q Consensus 263 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~ 334 (625)
+..+|.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++.. +.
T Consensus 77 ------~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 146 (273)
T 1ouv_A 77 ------CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DG 146 (273)
T ss_dssp ------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred ------HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cH
Confidence 3444455555 67888888888888876 378899999999999 999999999999999876 68
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006937 335 EACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYN 406 (625)
Q Consensus 335 ~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (625)
.++..+|.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..| +.+++
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~ 222 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCF 222 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHH
Confidence 899999999999 99999999999999987 468899999999999 9999999999999999866 88999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhh
Q 006937 407 NLGVLYRD----AGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 407 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
.+|.+|.. .+++++|+.+|+++++..|++...
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999 999999999999999999875433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=210.51 Aligned_cols=241 Identities=13% Similarity=0.132 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 006937 193 AYYNLGVVYSELMQYDTALGCYEKAALE---RPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (625)
Q Consensus 193 ~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (625)
.++.+|.++...|++++|+.+++++++. .++ ...++..+|.++...|++++|+.++++++++.+.........+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4455999999999999999999999986 232 4688999999999999999999999999998776654345567
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hC-CCCH
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFH-----FN-PHCA 334 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~-~~~~ 334 (625)
.++..+|.++...|++++|+.+++++++..+.. ..++.++|.++...|++++|+.+++++++ .+ |...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 889999999999999999999999999875543 35899999999999999999999999999 45 7778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHH
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYN 406 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~ 406 (625)
.++..+|.++...|++++|+.++++++++. |.....+..+|.++...|+ +++|+..+++. ...|....++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 999999999999999999999999999884 3333456789999999999 88888888876 33445567899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 407 NLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
.+|.+|...|++++|..+|++++++...
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=193.19 Aligned_cols=231 Identities=16% Similarity=0.094 Sum_probs=157.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (625)
.+...|++++|+..|+++++..+.+... .+.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDE---RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred ccCccchHHHHHHHHHHHHhcccccCch---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 3445678889999999988875544321 2455888899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++.......... ...|++++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~ 162 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA--------EQKLDEKQ 162 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH--------HHHHCHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH--------HHhcCHHH
Confidence 9999999999999999999999999999999999999999999999999888876433222111 22345566
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMA 360 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (625)
|+..+++++...|.+...+. ++.++...++.++|+..+++++...|. +..++..+|.++...|++++|+.+|+++
T Consensus 163 A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 163 AKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666555555555433322 444444444555555555555444332 1344444444444444444444444444
Q ss_pred HccCCCC
Q 006937 361 LSIKPNF 367 (625)
Q Consensus 361 l~~~~~~ 367 (625)
++.+|++
T Consensus 242 l~~~p~~ 248 (275)
T 1xnf_A 242 VANNVHN 248 (275)
T ss_dssp HTTCCTT
T ss_pred HhCCchh
Confidence 4444433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=197.14 Aligned_cols=250 Identities=17% Similarity=0.153 Sum_probs=206.6
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006937 164 GTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (625)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 239 (625)
+......|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 333445688999999999999973 4567899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 006937 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 319 (625)
++++|+.+|+++++..|.+...+..++.++ ...|++++|+..++++++..|++......++.. ...|++++|
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~-------~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A 163 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIAL-------YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQA 163 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHH-------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHH-------HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHH
Confidence 999999999999999998876555555544 446799999999999999999988766655544 566899999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 320 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
+..+++++...|.+...+. ++.++...++.++|+..+++++...|.. ..++..+|.++...|++++|+.+|++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 164 KEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988888766554 7777788888899999999998876643 6788899999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (625)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (625)
..+|++... .+.++..+|++++|++.+
T Consensus 243 ~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred hCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 998876443 367788888888888877
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-21 Score=185.13 Aligned_cols=181 Identities=23% Similarity=0.333 Sum_probs=93.5
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 006937 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDL 241 (625)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~ 241 (625)
.+++++|+..|+++++.+ ++.+++.+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCH
Confidence 444444444444444432 34445555555555 555555555555555442 44555555555555 4555
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHH
Q 006937 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFD 317 (625)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~ 317 (625)
++|+.+|+++++.. +..++..+|.++.. .++++
T Consensus 131 ~~A~~~~~~a~~~~-------------------------------------------~~~a~~~lg~~~~~~~~~~~~~~ 167 (273)
T 1ouv_A 131 KKAVEYFTKACDLN-------------------------------------------DGDGCTILGSLYDAGRGTPKDLK 167 (273)
T ss_dssp HHHHHHHHHHHHTT-------------------------------------------CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHhcC-------------------------------------------cHHHHHHHHHHHHcCCCCCCCHH
Confidence 55555555444432 22333444444444 45555
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 006937 318 MAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAE 389 (625)
Q Consensus 318 ~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 389 (625)
+|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..| +.++..+|.++.. .+++++|+.
T Consensus 168 ~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 168 KALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIE 243 (273)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 555555555544 234555555555555 5566666666666655533 5556666666665 666666666
Q ss_pred HHHHHHHhCCCc
Q 006937 390 MIEKAIAANPTY 401 (625)
Q Consensus 390 ~~~~al~~~p~~ 401 (625)
+|+++++..|++
T Consensus 244 ~~~~a~~~~~~~ 255 (273)
T 1ouv_A 244 NFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHTCHH
T ss_pred HHHHHHHcCCHH
Confidence 666666665543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=179.75 Aligned_cols=172 Identities=25% Similarity=0.363 Sum_probs=120.0
Q ss_pred CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006937 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (625)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 159 (625)
+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.++...|++++|+..+++++...|+....
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 75 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA------- 75 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH-------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH-------
Confidence 3456666667777777777777777777777777766667777777777777777777777776666666554
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 239 (625)
+..+|.++...++++.|+..+.+++..+|.+..++..+|.++...|++++|++.|+++++.+|.++.++..+|.++..+|
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 45556666666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCc
Q 006937 240 DLESAIACYERCLAVSPNF 258 (625)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~ 258 (625)
++++|+..|+++++++|++
T Consensus 156 ~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 156 LRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp CHHHHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHhCCccC
Confidence 7777777777777776654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-22 Score=188.37 Aligned_cols=208 Identities=18% Similarity=0.110 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (625)
+.+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------
Confidence 55566666666666666666666666666666666666666666666666666666665555544
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcC
Q 006937 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH--FNPHCAEACNNLGVIYKDRD 348 (625)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~ 348 (625)
|.+..++..+|.++...|++++|+..+++++. ..|.+..++..+|.++...|
T Consensus 102 --------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 102 --------------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT
T ss_pred --------------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC
Confidence 44556666777777777788888888888777 67777788888888888888
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (625)
++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|..+++++
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhcCCCChhhh
Q 006937 429 LKIDPDSRNAG 439 (625)
Q Consensus 429 l~~~p~~~~~~ 439 (625)
++..|+++.+.
T Consensus 236 ~~~~p~~~~~~ 246 (252)
T 2ho1_A 236 KRLYPGSLEYQ 246 (252)
T ss_dssp HHHCTTSHHHH
T ss_pred HHHCCCCHHHH
Confidence 88888877654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-22 Score=181.58 Aligned_cols=213 Identities=16% Similarity=0.111 Sum_probs=157.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 006937 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (625)
Q Consensus 187 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (625)
.|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-------------- 69 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL-------------- 69 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHH--------------
Confidence 344455555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHH
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-LKFDMAIVFYELAFH--FNPHCAEACNNLGVI 343 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~--~~~~~~~~~~~la~~ 343 (625)
...|.+..++..+|.++... |++++|+..++++++ ..|.+..++..+|.+
T Consensus 70 ---------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 70 ---------------------------SIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp ---------------------------HHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred ---------------------------HhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 44555566677777788888 888888888888887 556667888888888
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHH
Q 006937 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP-TYAEAYNNLGVLYRDAGSISLAI 422 (625)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~ 422 (625)
+...|++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..| .+...+..++.++...|+.++|.
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888 88888888888888888888888
Q ss_pred HHHHHHHhcCCCChhhhh
Q 006937 423 DAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 423 ~~~~~al~~~p~~~~~~~ 440 (625)
.+++.+.+.+|+++.+..
T Consensus 203 ~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 203 EYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH
Confidence 888888888888876643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=179.86 Aligned_cols=212 Identities=19% Similarity=0.125 Sum_probs=198.7
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+..+..++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 006937 125 LYKDE-GRLVEAAESYHKALS--ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (625)
Q Consensus 125 ~~~~~-g~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 201 (625)
++... |++++|+..++++++ ..|.... ++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYI-------ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK 157 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999 999999999999999 4444333 4788899999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHh
Q 006937 202 SELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (625)
Q Consensus 202 ~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 263 (625)
...|++++|+..++++++..| .+...+..++.++...|+.++|..+++.+.+..|+++....
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999 99999999999999999999999999999999999876543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-23 Score=209.89 Aligned_cols=223 Identities=19% Similarity=0.205 Sum_probs=161.4
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY-DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (625)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (625)
+.+++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4577888889999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHh--chhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006937 250 RCLAVSPNFEIAKNNMAIALTDL--GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (625)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 327 (625)
++++.+|+ ...+..++.++..+ +......|++++|+..|+++++.+|++..
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------------------- 214 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR-------------------------- 214 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--------------------------
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH--------------------------
Confidence 99999998 45555555555443 11111114555555555555555555544
Q ss_pred hhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHccCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 328 HFNPHCAEACNNLGVIYKDR--------DNLDKAVECYQMALSIKP---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (625)
++..+|.++... |++++|+.+|+++++++| +++.++.++|.++...|++++|+..|+++++
T Consensus 215 --------~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 215 --------SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp --------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555444 556666666666666666 6666666666666666666666666666666
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (625)
++|++..++..++.++..+|++++|+..+.+.
T Consensus 287 l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 287 LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66666666666666666666666666655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-20 Score=203.29 Aligned_cols=336 Identities=12% Similarity=0.063 Sum_probs=261.7
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (625)
..+++..-..++.+...|.+.+|+++|++++. .|. +...-..++.+..+. +..+..++..+.-..+ .-
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl-~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVL-DNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHc-CCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HH
Confidence 35666677788888999999999999999994 444 334444455555544 4455555444432211 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (625)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (625)
.+|.++...|.+++|..+|+++- ....+ +...+...+++++|+++++++ +.+.+|+.+|.+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~----~~~~A----------~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD----VNTSA----------VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKA 1114 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC----CHHHH----------HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHH
Confidence 48999999999999999999973 11111 222334678999999999865 568999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcC
Q 006937 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (625)
+...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++.. .... +|..+.+.+
T Consensus 1115 ql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-Idt~-------LafaYAKl~ 1181 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-VETE-------LIFALAKTN 1181 (1630)
T ss_pred HHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc-ccHH-------HHHHHHhhc
Confidence 99999999999999886 7889999999999999999999999999998875532 1122 444444456
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (625)
Q Consensus 281 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (625)
++++ ++.|. ...+...+..+|..+...|+|++|..+|.++ ..|..+|.++.+.|++++|++.++++
T Consensus 1182 rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1182 RLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred CHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 7775 33332 2334566778999999999999999999996 58999999999999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 361 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
.+..+|...+.++...|++..|..+... +..+ ++.+..++..|...|.+++|+.++++++.++|.+...+.
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft 1318 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 1318 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH
Confidence 5578999999999999999999998874 4444 455668999999999999999999999999988877776
Q ss_pred hHH
Q 006937 441 NRL 443 (625)
Q Consensus 441 ~~~ 443 (625)
.+.
T Consensus 1319 ELa 1321 (1630)
T 1xi4_A 1319 ELA 1321 (1630)
T ss_pred HHH
Confidence 543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.9e-22 Score=190.90 Aligned_cols=229 Identities=10% Similarity=0.041 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCCh-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q 006937 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT-------QDGIQKYYEALK-IDPHYAPAYYNLGVVYSEL 204 (625)
Q Consensus 133 ~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~-------~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~ 204 (625)
++|+..|++++..+|.+...+..++..+...+..+...|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 57777888888888887777665555554443334455775 899999999999 6999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHH
Q 006937 205 MQYDTALGCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (625)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.....+...+.... ...|+++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~------~~~~~~~ 186 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY------YCSKDKS 186 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH------HTSCCHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH------HHcCCHH
Confidence 9999999999999999998886 89999999999999999999999999988876543322211111 1135666
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF---NP-HCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 284 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
+|+..|+++++.+|+++.++..++.++...|++++|+..|++++.. .| ....+|..++..+...|++++|...+++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666663 33 2455566666666666666666666666
Q ss_pred HHccCCCC
Q 006937 360 ALSIKPNF 367 (625)
Q Consensus 360 al~~~~~~ 367 (625)
+++..|++
T Consensus 267 a~~~~p~~ 274 (308)
T 2ond_A 267 RFTAFREE 274 (308)
T ss_dssp HHHHTTTT
T ss_pred HHHHcccc
Confidence 66666553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=183.86 Aligned_cols=217 Identities=19% Similarity=0.183 Sum_probs=196.1
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
.+++.++..|..++..|+|++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4568999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYS 202 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~ 202 (625)
++...|++++|+..|+++++..|++......++.++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999888888899999999999999999999999999999999 9999999999997
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH
Q 006937 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (625)
Q Consensus 203 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 269 (625)
..| ...++++....+.....+ .+......+.+++|+.+|+++++++|++......++.+.
T Consensus 165 ~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 165 NNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 665 445667777766664443 344556677899999999999999999998877776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=207.78 Aligned_cols=200 Identities=16% Similarity=0.135 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHH
Q 006937 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL-ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (625)
+++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++.+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~------------------------------ 133 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE------------------------------ 133 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC------------------------------
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC------------------------------
Confidence 45555566666666666666666666666666666 66666666555554
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHH
Q 006937 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---------DNLDKAVEC 356 (625)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~ 356 (625)
|++..++..+|.++...|++++|+..|+++++++|+ ..++..+|.++... |++++|+..
T Consensus 134 -----------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~ 201 (474)
T 4abn_A 134 -----------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201 (474)
T ss_dssp -----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHH
Confidence 556677788888888889999999999999999988 78999999999999 999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 357 YQMALSIKPNFSQSLNNLGVVYTVQ--------GKMDAAAEMIEKAIAANP---TYAEAYNNLGVLYRDAGSISLAIDAY 425 (625)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (625)
|+++++++|+++.++..+|.++... |++++|+.+|+++++++| +++.+++++|.+|..+|++++|+..|
T Consensus 202 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999 99999999999999999999999999
Q ss_pred HHHHhcCCCChhhhhhHHHHhhh
Q 006937 426 EQCLKIDPDSRNAGQNRLLAMNY 448 (625)
Q Consensus 426 ~~al~~~p~~~~~~~~~~~~~~~ 448 (625)
+++++++|++..++.++...+..
T Consensus 282 ~~al~l~p~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 282 SQAAALDPAWPEPQQREQQLLEF 304 (474)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999988776544443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=189.76 Aligned_cols=223 Identities=11% Similarity=-0.004 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHhHHHHHHH-------hcCH-------HHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHc
Q 006937 65 VDALALYEIVLEKDSGNVEAHIGKGICLQM-------QNMG-------RLAFDSFSEAVK-LDPQNACAHTHCGILYKDE 129 (625)
Q Consensus 65 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 129 (625)
++|+..|+++++.+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999998874 4885 899999999999 6999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHH
Q 006937 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-LMQYD 208 (625)
Q Consensus 130 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~ 208 (625)
|++++|...|+++++..|.+... ++..+|.++...|++++|+..|+++++..|....++...+.+... .|+++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTL------VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHH------HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred CCHHHHHHHHHHHHhccccCccH------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999987641 267778888888999999999999999999888888777666543 79999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-cHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV---SPN-FEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 209 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
+|+..|+++++.+|+++.++..++.++...|++++|+..|++++.. .|+ ....+..++ ......|+.++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~-------~~~~~~g~~~~ 259 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL-------AFESNIGDLAS 259 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH-------HHHHHHSCHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-------HHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999999985 332 333333333 33333567777
Q ss_pred HHHHHHHHHhhCCCCH
Q 006937 285 GVAYYKKALYYNWHYA 300 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~ 300 (625)
|..+++++++..|++.
T Consensus 260 a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 260 ILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHccccc
Confidence 7777777777777644
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=200.36 Aligned_cols=239 Identities=10% Similarity=0.083 Sum_probs=205.3
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 006937 159 VLTDLGTSLKLAGNTQDGIQKYYEALKI---DPH---YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-------YA 225 (625)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~~ 225 (625)
.++..|..+...|++++|+..|+++++. .++ ...++..+|.++...|++++|+.+++++++..+. ..
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4666899999999999999999999987 222 4688999999999999999999999999987433 35
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHh-----hC-CCC
Q 006937 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-----YN-WHY 299 (625)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-----~~-~~~ 299 (625)
.++..+|.++...|++++|+.+|+++++..+... .....+.++..+|.++...|++++|+.+++++++ .+ |..
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 6899999999999999999999999998865432 2235577888899999999999999999999998 45 777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCHHHH
Q 006937 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-----PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSL 371 (625)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~ 371 (625)
..++..+|.++...|++++|+.++++++++. |.....+..+|.++...|+ +.+|+.++++. ...|....++
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 342 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 8899999999999999999999999999873 3334446789999999999 88888888887 3344556789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006937 372 NNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (625)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (625)
..+|.+|...|++++|..++++++++..
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998743
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-20 Score=198.76 Aligned_cols=320 Identities=16% Similarity=0.152 Sum_probs=259.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 006937 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133 (625)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (625)
.|..+...|.|++|..+|+++- .+. ..+...+...+++++|.++++++ +.+.+|..+|.++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~---~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNT---SAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHH---HHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 4899999999999999999972 111 11233344888999999998865 66889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213 (625)
Q Consensus 134 ~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 213 (625)
+|+..|.++ ++... +..++.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.
T Consensus 1123 EAIdsYiKA-----dD~sa-------y~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~ 1188 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDPSS-------YMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEE 1188 (1630)
T ss_pred HHHHHHHhc-----CChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHH
Confidence 999999886 44454 777889999999999999999999988744 3334458999999999885 444
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHH
Q 006937 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (625)
Q Consensus 214 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 293 (625)
|. ..+ +...+..+|..+...|++++|..+|.++- .|..++.++...|++++|++.++++
T Consensus 1189 fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------------ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1189 FI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------NFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------------HHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 42 233 44667789999999999999999999861 3445555555567999999999998
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 006937 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373 (625)
Q Consensus 294 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 373 (625)
.+..+|...+.++...|++..|..+... +..+ ++.+..++..|...|.+++|+.++++++.+++.+...+..
T Consensus 1248 ----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 4678999999999999999999998774 4333 5566689999999999999999999999999999999988
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 374 LGVVYTV--QGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 374 la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (625)
+|.++.+ -++..++++.|...+.+.| ++...|..+..+|.+-|+++.|+......
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 8888875 4578889999998888777 77889999999999999999999544433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-21 Score=175.44 Aligned_cols=154 Identities=25% Similarity=0.313 Sum_probs=129.1
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006937 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (625)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 237 (625)
.+..+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|++..++..+|.++..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 388899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHh
Q 006937 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGE 312 (625)
Q Consensus 238 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~ 312 (625)
.|++++|+..++++++..|++......++.++..+|.++...|++++|+..|+++++.+|+ +..++..+|.++..
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999999999999999999998776666666666665555555555555555555555555 55555555555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=193.87 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 006937 193 AYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (625)
Q Consensus 193 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (625)
.++.+|..+...|++++|+..|+++++..+ ....++..+|.++...|++++|+.+++++++..+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 577889999999999999999999997632 24678999999999999999999999999998776543333568
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCHH
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAYGEMLKFDMAIVFYELAFH-----FNPHCAE 335 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~~~~~~ 335 (625)
.++..+|.++...|++++|+.+++++++..+. ...++.++|.++...|++++|+.++++++. .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 88999999999999999999999999986432 245789999999999999999999999999 6787899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCC-----CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHH
Q 006937 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNN 407 (625)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 407 (625)
++..+|.++...|++++|+.++++++++.+ .....+..++.++...++ +.+|+.++++. ...|....++..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 999999999999999999999999999844 334567788888888998 88888888872 233444678889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 408 LGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
+|.+|...|++++|..+|+++++..
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=208.44 Aligned_cols=174 Identities=21% Similarity=0.333 Sum_probs=147.3
Q ss_pred cCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006937 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (625)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 156 (625)
..|++++++.++|.++..+|++++|+..|+++++++|++..++..+|.++..+|++++|+..|+++++++|++..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a---- 79 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA---- 79 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----
Confidence 4677888888888888888888888888888888888888888888888888888888888888888888887665
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006937 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (625)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 236 (625)
+.++|.++..+|++++|++.|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.++.++|.++.
T Consensus 80 ---~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 80 ---YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 77778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCC
Q 006937 237 NRGDLESAIACYERCLAVSPN 257 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~ 257 (625)
..|++++|++.+++++++.|+
T Consensus 157 ~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HTTCCTTHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhChh
Confidence 888888888888888877554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-20 Score=183.20 Aligned_cols=309 Identities=11% Similarity=-0.028 Sum_probs=185.7
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006937 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158 (625)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 158 (625)
++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|...+++++...+..... ...+.
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~ 94 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HYALW 94 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH-HHHHH
Confidence 344455555555555555555555555544321 245566666777777777777777776654443221 22344
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CH
Q 006937 159 VLTDLGTSLKLAGNTQDGIQKYYEALKID--------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-----YA 225 (625)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~ 225 (625)
++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|..++++++...+. ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 56777888888888888888888887763 334567788999999999999999999999988764 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 006937 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (625)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 305 (625)
.++..+|.++...|++++|...+++++...+............. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~----------------------------------~~ 220 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN----------------------------------KV 220 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH----------------------------------HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH----------------------------------HH
Confidence 67889999999999999999999999876433110000011111 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CHHHHHHHH
Q 006937 306 LGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSLNNLG 375 (625)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la 375 (625)
++.++...|++++|...+++++...+.. ...+..+|.++...|++++|+..+++++...+. ...++..+|
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 2233444445555555554444433321 223445556666666666666666665554321 123556666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
.++...|++++|...+++++...+. ......+...| +.....+++.+...|-
T Consensus 301 ~~~~~~g~~~~A~~~l~~al~~~~~-----~g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 301 QLYWQAGRKSDAQRVLLDALKLANR-----TGFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHH-----HCCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhcc-----ccHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 6677777777777777776665321 01112222333 4555666666666664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-22 Score=192.55 Aligned_cols=244 Identities=19% Similarity=0.259 Sum_probs=193.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 006937 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--- 255 (625)
Q Consensus 187 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 255 (625)
+|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999999999999999884 56677889999999999999999999999998874
Q ss_pred --CCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006937 256 --PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYEL 325 (625)
Q Consensus 256 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 325 (625)
++.+ ..+.++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.++++
T Consensus 103 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 103 LGKDHP----AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HCTTCH----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCCh----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222 235567778888888999999999999999874 45567899999999999999999999999
Q ss_pred HHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---------CC------HHHHHHHHHHHHHcC
Q 006937 326 AFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---------NF------SQSLNNLGVVYTVQG 382 (625)
Q Consensus 326 al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---------~~------~~~~~~la~~~~~~g 382 (625)
+++. .|....++..+|.++...|++++|+.+++++++..+ .. ...+..++..+...+
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 9998 666788999999999999999999999999997632 22 223444455556667
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
.+.+|...++++....|....++..+|.+|..+|++++|+.+|++++++.|+
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 7788888999999999999999999999999999999999999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=187.00 Aligned_cols=253 Identities=18% Similarity=0.205 Sum_probs=152.2
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC
Q 006937 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKL--------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD-----PSY 149 (625)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~ 149 (625)
.++..+|.++...|++++|+..+++++++ .|....++..+|.++...|++++|+..+++++... ++.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33344444444444444444444444432 33344455555666666666666666666665542 222
Q ss_pred HHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 006937 150 KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE- 220 (625)
Q Consensus 150 ~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 220 (625)
.. .+.++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+.+++++++.
T Consensus 108 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 108 PA----VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp HH----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred hH----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 24558889999999999999999999999874 556778999999999999999999999999988
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHH
Q 006937 221 -------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (625)
Q Consensus 221 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 293 (625)
.|....++..+|.++...|++++|+.+++++++..+........ .. ......
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~-------~~~~~~--------- 242 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD-----DE-------NKPIWM--------- 242 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------------------CCHHH---------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC-----cc-------hHHHHH---------
Confidence 66678899999999999999999999999999764431100000 00 000000
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 006937 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (625)
Q Consensus 294 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (625)
....+..++..+...+.+.+|...+.++....|....++..+|.++...|++++|+.+|++++++.|
T Consensus 243 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 243 -----HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp -----HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 0112223333344445555555556655555555566666666666666666666666666665544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=181.21 Aligned_cols=280 Identities=14% Similarity=0.015 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------
Q 006937 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (625)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------ 190 (625)
.++..+|.++...|++++|+..+++++...|.... ...+.++..+|.++...|++++|+..+++++...+..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 45677888999999999999999999998775432 2234567788899999999999999999998875432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALER--------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (625)
..++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|..++++++...+.....
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~- 171 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ- 171 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH-
Confidence 2346788999999999999999999988764 3345677788899999999999999999988877653211
Q ss_pred hhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC-HHHH--
Q 006937 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HC-AEAC-- 337 (625)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~-~~~~-- 337 (625)
....++..+|.++...|++++|...+++++.+.+ .. ....
T Consensus 172 -----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 172 -----------------------------------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp -----------------------------------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 1233556677777777777777777777776522 22 1111
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHH
Q 006937 338 --NNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAY 405 (625)
Q Consensus 338 --~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 405 (625)
..++.++...|++++|..++++++...+.. ...+..++.++...|++++|...+++++...+. ...++
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 235566889999999999999999887653 336788999999999999999999999887432 23588
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
..+|.++...|++++|...+++++.+.+.
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999998664
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-20 Score=184.59 Aligned_cols=239 Identities=15% Similarity=0.146 Sum_probs=203.6
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C
Q 006937 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-------Y 224 (625)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~ 224 (625)
..++..|..+...|++++|+..|+++++..+ ....++..+|.+|...|++++|+.+++++++..+. .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3477789999999999999999999998732 24678999999999999999999999999986442 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHh-----hCCCC
Q 006937 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-----YNWHY 299 (625)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-----~~~~~ 299 (625)
..++..+|.++...|++++|+.+|++++++.+.... ....+.++..+|.++...|++++|+.++++++. .+|..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN-DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 567889999999999999999999999987543221 125577888999999999999999999999999 77878
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCHHHH
Q 006937 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-----PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSL 371 (625)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~ 371 (625)
..++..+|.++...|++++|+.++++++++. +.....+..++.++...++ +.+|+.++++. ...+....++
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 8999999999999999999999999999984 3345567788889988898 88898888873 3334456688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006937 372 NNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (625)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (625)
..+|.+|...|++++|..+|+++++..
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999998753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-19 Score=170.01 Aligned_cols=236 Identities=11% Similarity=-0.007 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRG--DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
.++|+..+.+++.++|++..+|+..+.++...+ ++++++..+.+++..+|++..++.....++..+.......+++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 357778888888888888888888888887777 888888888888888888888777777777333221111367899
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------HHHHHHH
Q 006937 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKDRDN------LDKAVEC 356 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~------~~~A~~~ 356 (625)
++.++.++++.+|++..+|...+.++...|.++ ++++.++++++.+|.+..+|...+.++...++ +++++++
T Consensus 129 EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~ 208 (306)
T 3dra_A 129 EFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNY 208 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence 999999999999999999999999999999998 99999999999999999999999999999987 9999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c
Q 006937 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDA-AAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-I 431 (625)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~ 431 (625)
+.+++..+|++..+|..++.++...|+..+ ...++++++.++ |.++.++..++.+|.+.|+.++|+++|+.+.+ +
T Consensus 209 ~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 209 VKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY 288 (306)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998555 556777777766 88899999999999999999999999999997 8
Q ss_pred CCCChhhhhhH
Q 006937 432 DPDSRNAGQNR 442 (625)
Q Consensus 432 ~p~~~~~~~~~ 442 (625)
+|-....|..+
T Consensus 289 Dpir~~yW~~~ 299 (306)
T 3dra_A 289 NPIRSNFWDYQ 299 (306)
T ss_dssp CGGGHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 99988777654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-20 Score=173.38 Aligned_cols=191 Identities=15% Similarity=0.166 Sum_probs=139.0
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---AC 117 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 117 (625)
.+.+++.++.+|..++..|+|++|+..|+++++.+|++ ..+++.+|.+++..|++++|+..|+++++..|++ +.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 44678899999999999999999999999999999999 8999999999999999999999999999998854 67
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 006937 118 AHTHCGILYKD--------EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (625)
Q Consensus 118 ~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (625)
+++.+|.++.. .|++++|+..|+++++..|++......+..+... .+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~------------------------~~~ 146 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL------------------------RAK 146 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH------------------------HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH------------------------HHH
Confidence 89999999999 9999999999999999999986653322111100 000
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCC
Q 006937 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNR----------GDLESAIACYERCLAVSP 256 (625)
Q Consensus 190 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~ 256 (625)
....++.+|.+|...|++++|+..|+++++..|+ .+.+++.+|.++... |++++|+..|+++++..|
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 1122445555555555555555555555555554 334555555555544 555555555555555555
Q ss_pred Cc
Q 006937 257 NF 258 (625)
Q Consensus 257 ~~ 258 (625)
++
T Consensus 227 ~~ 228 (261)
T 3qky_A 227 DS 228 (261)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-20 Score=174.09 Aligned_cols=215 Identities=12% Similarity=0.070 Sum_probs=141.4
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 006937 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (625)
Q Consensus 185 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (625)
...|.++..++.+|..++..|++++|+..|+++++..|.+ +.+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~- 87 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR- 87 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch-
Confidence 4577888889999999999999999999999999988888 888999999999999999999999999988886532
Q ss_pred HhhHHHHHHHhchhhhh--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 006937 262 KNNMAIALTDLGTKVKL--------EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333 (625)
Q Consensus 262 ~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 333 (625)
...++..+|.++.. .|++++|+..|+++++.+|++..+...+..+....++ .
T Consensus 88 ---~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~ 147 (261)
T 3qky_A 88 ---VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------L 147 (261)
T ss_dssp ---HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------H
T ss_pred ---hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------H
Confidence 12233444444444 5566666666666666666554433322222111111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCC
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLGVVYTVQ----------GKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~ 400 (625)
...++.+|.++...|++++|+..|+++++..|+ .+.++..+|.++..+ |++++|+..|+++++..|+
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 122466677777777777777777777776666 345666777776655 6667777777777777666
Q ss_pred cH---HHHHHHHHHHHHcCCHHH
Q 006937 401 YA---EAYNNLGVLYRDAGSISL 420 (625)
Q Consensus 401 ~~---~~~~~la~~~~~~g~~~~ 420 (625)
++ .+...++.++..++++++
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHhhh
Confidence 63 444555555555554443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-18 Score=165.12 Aligned_cols=234 Identities=12% Similarity=0.026 Sum_probs=216.1
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCH
Q 006937 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM--QYDTALGCYEKAALERPMYAEAYCNMGVIY----KNR---GDL 241 (625)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~---g~~ 241 (625)
...++|+..+.+++.++|++..+|+..+.++...+ ++++++..+++++..+|.+..+|+..+.++ ... +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 44479999999999999999999999999999999 999999999999999999999999999999 777 899
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----
Q 006937 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKALYYNWHYADAMYNLGVAYGEMLK---- 315 (625)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~---- 315 (625)
++++.++.++++.+|++..++.....++..++ .++ +++++++++++.+|.+..+|...+.++...++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~-------~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFD-------LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 99999999999999999999998888887765 455 99999999999999999999999999999988
Q ss_pred --HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHccC---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 316 --FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIK---PNFSQSLNNLGVVYTVQGKMDAAAE 389 (625)
Q Consensus 316 --~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~ 389 (625)
++++++++.+++..+|.+..+|+.++.++...|+..+ ...++.++++++ |.++.++..++.++.+.|+.++|++
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999999999999999999999999998555 556778888776 8899999999999999999999999
Q ss_pred HHHHHHH-hCCCcHHHHHHHHHH
Q 006937 390 MIEKAIA-ANPTYAEAYNNLGVL 411 (625)
Q Consensus 390 ~~~~al~-~~p~~~~~~~~la~~ 411 (625)
+|+.+.+ .+|-....|...+..
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999997 799999998877654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=178.98 Aligned_cols=220 Identities=15% Similarity=0.147 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHH
Q 006937 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (625)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (625)
++++|+..|+++ |.++...|++++|+..|++++++.+... .....+.++..+|.++...|++++|
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666665 4456666777777777776666543211 1112345566666666666677777
Q ss_pred HHHHHHHHhhCCCC------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHH
Q 006937 286 VAYYKKALYYNWHY------ADAMYNLGVAYGEM-LKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDK 352 (625)
Q Consensus 286 ~~~~~~~l~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~ 352 (625)
+.+|++++++.+.. ..++..+|.+|... |++++|+.+|++++++.|.. ..++.++|.++..+|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 77777776665432 45788899999986 99999999999999887654 5678899999999999999
Q ss_pred HHHHHHHHHccCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH--HcCCH
Q 006937 353 AVECYQMALSIKPNFSQ-------SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE-----AYNNLGVLYR--DAGSI 418 (625)
Q Consensus 353 A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~ 418 (625)
|+.+|++++++.|++.. ++.++|.++..+|++++|+.+|+++++++|+... .+..++..+. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999998877643 6788999999999999999999999998887654 3455666664 46789
Q ss_pred HHHHHHHHHHHhcCCCChhhhh
Q 006937 419 SLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 419 ~~A~~~~~~al~~~p~~~~~~~ 440 (625)
++|+..|++++.++|.+.....
T Consensus 257 ~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHhccCCccHHHHHHHHH
Confidence 9999999999998887654433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-20 Score=176.29 Aligned_cols=214 Identities=16% Similarity=0.125 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHhHHHHHHHh---cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142 (625)
Q Consensus 66 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (625)
+|.++++++-+.-+.....+ .++.. +++++|+..|+++ |.++...|++++|+..|+++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 45666666666655432221 11222 2488888888776 55677888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHH
Q 006937 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSEL-MQYDTALGCYE 215 (625)
Q Consensus 143 l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~ 215 (625)
+.+.+.... ....+.++.++|.++...|++++|+.+|++++++.+.. ..++.++|.+|... |++++|+.+|+
T Consensus 64 l~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 64 ADYQKKAGN-EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 877543211 12235668888888888899999999999988886543 56788999999996 99999999999
Q ss_pred HHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHH
Q 006937 216 KAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (625)
Q Consensus 216 ~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (625)
+++++.|.. ..++..+|.++..+|++++|+.+|+++++..|++.........++..+|.++...|++++|+..|
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999987753 56789999999999999999999999999998865433333334444444444455555555555
Q ss_pred HHHHhhCCCC
Q 006937 290 KKALYYNWHY 299 (625)
Q Consensus 290 ~~~l~~~~~~ 299 (625)
+++++++|..
T Consensus 223 ~~al~l~p~~ 232 (292)
T 1qqe_A 223 QEGQSEDPNF 232 (292)
T ss_dssp HGGGCC----
T ss_pred HHHHhhCCCC
Confidence 5555554443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-21 Score=186.56 Aligned_cols=285 Identities=14% Similarity=0.116 Sum_probs=95.6
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESY 139 (625)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 139 (625)
..|++++|.++++++ +++.+|..+|.++...|++++|++.|.++ .++..+...+..+...|++++|+.++
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 445566666666665 22346666666666666666666666542 34445566666666666666666666
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (625)
Q Consensus 140 ~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 219 (625)
+.+.+..++ +. +...++.+|.+.|++.++.+.++. | +..++..+|..+...|+|++|..+|.++
T Consensus 85 ~~ark~~~~-~~-------i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 85 QMARKKARE-SY-------VETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--
T ss_pred HHHHHhCcc-ch-------hHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 655553222 11 134455555556666665555531 2 2236666666666666666666666654
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC
Q 006937 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299 (625)
Q Consensus 220 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 299 (625)
..+..+|.++.++|++++|++.++++ .++..|.....++.. .|+++.|..+... +.. +
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-------~~ef~lA~~~~l~-L~~---~ 206 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD-------GKEFRLAQMCGLH-IVV---H 206 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-------TTCHHHHHHTTTT-TTT---C
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH-------cCcHHHHHHHHHH-HHh---C
Confidence 34556666666666666666666665 233333333333333 3466666444443 112 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHccCC-----CCHHHHH
Q 006937 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR--DNLDKAVECYQMALSIKP-----NFSQSLN 372 (625)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~-----~~~~~~~ 372 (625)
++-...+..+|.+.|++++|+.++++++.+++....++..+|.+|.+- ++..+.++.|...+.+.| .+...|.
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 333334555666666666666666666666666666666666655542 345555555555555555 4555666
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 006937 373 NLGVVYTVQGKMDAAAEMIE 392 (625)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~ 392 (625)
.+..+|...++++.|+..+-
T Consensus 287 e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHHHH
Confidence 66666666666666655443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-17 Score=173.36 Aligned_cols=386 Identities=7% Similarity=-0.035 Sum_probs=296.1
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcC---HHHHHHHHHHHHhcCC--CcHHH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM---GRLAFDSFSEAVKLDP--QNACA 118 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~~~~~ 118 (625)
.+.+.+.|..++......+.++.+..+|++++...|.....|...+......++ ++.+..+|++++...| .+...
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 456889999999999999999999999999999999999999999999999999 9999999999999984 57778
Q ss_pred HHHHHHHHHHcCCH--------HHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhH--HHHHHhCChHHHHHHHHHHH
Q 006937 119 HTHCGILYKDEGRL--------VEAAESYHKALSA----DPSYKPAAECLAIVLTDLG--TSLKLAGNTQDGIQKYYEAL 184 (625)
Q Consensus 119 ~~~la~~~~~~g~~--------~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~l~--~~~~~~~~~~~A~~~~~~~l 184 (625)
|..........++. +.....|++++.. ++.....|........... .-+..+++.+.+..+|++++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88877666665553 3344788888764 4555555443322211000 00111223444555555555
Q ss_pred hhCCCCH-------------------------------------------------------------------------
Q 006937 185 KIDPHYA------------------------------------------------------------------------- 191 (625)
Q Consensus 185 ~~~~~~~------------------------------------------------------------------------- 191 (625)
.......
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 3211110
Q ss_pred -HHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCcHH
Q 006937 192 -PAYYNLGVVYSELMQ---------YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI-ACYERCLAVSPNFEI 260 (625)
Q Consensus 192 -~~~~~la~~~~~~~~---------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~ 260 (625)
..|..... +...+ .+.....|++++...|.++.+|+..+..+...|+.++|. ..|++++...|.+..
T Consensus 302 l~lW~~yi~--fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIR--WESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV 379 (679)
T ss_dssp HHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHH--HHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH
Confidence 11111111 11111 233567899999999999999999999999999999997 999999999998765
Q ss_pred HHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh-----------CCC-----------CHHHHHHHHHHHHhcCCHHH
Q 006937 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY-----------NWH-----------YADAMYNLGVAYGEMLKFDM 318 (625)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-----------~~~-----------~~~~~~~la~~~~~~~~~~~ 318 (625)
.+..++.. ....|++++|..+|++++.. .|. ...+|...+.+....|+.+.
T Consensus 380 Lwl~~a~~-------ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~ 452 (679)
T 4e6h_A 380 LAFSLSEQ-------YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAA 452 (679)
T ss_dssp HHHHHHHH-------HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHH-------HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHH
Confidence 55444444 44467899999999999875 243 34578888999999999999
Q ss_pred HHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 319 AIVFYELAFHF-NPHCAEACNNLGVIYKDRDN-LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 319 A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (625)
|..+|.++++. .+....+|...|.+....++ ++.|...|+++++..|+++..+...+......|+.+.|..+|++++.
T Consensus 453 AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 453 SRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999988 54557788888888777654 99999999999999999999999999999999999999999999999
Q ss_pred hCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 397 ANP---TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 397 ~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
..| ....+|......-...|+.+.+...++++.+..|++...
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 988 356788888899999999999999999999999997543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-19 Score=191.53 Aligned_cols=183 Identities=14% Similarity=0.012 Sum_probs=165.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHH--------HcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVL--------EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (625)
++...+..| ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++..+
T Consensus 393 ~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 469 (681)
T 2pzi_A 393 DVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRL 469 (681)
T ss_dssp STTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred CcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHH
Confidence 344444444 88999999999999999 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (625)
++.+|.++...|++++|+..|+++++++|++..+ +..+|.++...|++++ +..|+++++.+|++..+++++|
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~-------~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 470 VWYRAVAELLTGDYDSATKHFTEVLDTFPGELAP-------KLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHH-------HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-------HHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence 9999999999999999999999999999998776 7788888889999999 9999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006937 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 240 (625)
.++...|++++|+..|+++++.+|++..++.++|.++...++
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999977665
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-19 Score=157.63 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=165.9
Q ss_pred HHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (625)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 345 (625)
+..+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45667777788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (625)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (625)
..|++++|+.+++++++..|.+..++..+|.++...|++++|+.+++++++..|++..++..+|.++...|++++|..++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChhh
Q 006937 426 EQCLKIDPDSRNA 438 (625)
Q Consensus 426 ~~al~~~p~~~~~ 438 (625)
+++++.+|++...
T Consensus 168 ~~~~~~~~~~~~~ 180 (186)
T 3as5_A 168 KKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHCCCGG
T ss_pred HHHHHcCCCchhh
Confidence 9999999987654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=158.67 Aligned_cols=146 Identities=20% Similarity=0.282 Sum_probs=109.1
Q ss_pred hchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 006937 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351 (625)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 351 (625)
+|.++...|++++|+..+++++..+|+.+..++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 56666667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006937 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM-IEKAIAANPTYAEAYNNLGVLYRDAGS 417 (625)
Q Consensus 352 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (625)
+|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777777777777777777777777777777665554 477777777777777777777777664
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.8e-21 Score=184.27 Aligned_cols=333 Identities=12% Similarity=0.062 Sum_probs=193.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
..+.|..+|..+...|++++|++.|.++ .++..+...+.++...|++++|+.+++.+.+..++ +.+...++.+|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y 104 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHH
Confidence 3468999999999999999999999774 46678899999999999999999999999886444 77788899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
.+.|++.++.++++. |+. . .+..+|..+...|.+++|..+|.++ ..|..+|.++.++|+
T Consensus 105 ~Klg~l~e~e~f~~~-----pn~-~-------a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 105 AKTNRLAELEEFING-----PNN-A-------HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE 163 (449)
T ss_dssp ----CHHHHTTTTTC-----C------------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC
T ss_pred HHhCCHHHHHHHHcC-----CcH-H-------HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhcc
Confidence 999999999888752 432 2 3889999999999999999999976 478899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHH
Q 006937 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (625)
+++|++.++++ .++.+|...+.++...|+++.|..+... +...|+. +..+...|...|.+++|+
T Consensus 164 yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~----------l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 164 YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE----------LEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH----------HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh----------HHHHHHHHHHCCCHHHHH
Confidence 99999999999 4789999999999999999999887765 3344443 223555667789999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 287 AYYKKALYYNWHYADAMYNLGVAYGEM--LKFDMAIVFYELAFHFNP-----HCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
.++++++..++.+...+..+|.+|.+- ++..+.++.|...+.+.| .+...|..+..+|...++++.|+...-+
T Consensus 228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 999999999999999999999988764 567788888887777777 7788999999999999999999987766
Q ss_pred HHcc------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 360 ALSI------------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI--AANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (625)
Q Consensus 360 al~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (625)
.... .+.+.++++.....|. +....++..+..++ .++++ .....+.+.|+..-...++
T Consensus 308 h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~------r~v~~~~~~~~l~l~~~yl 379 (449)
T 1b89_A 308 HPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHT------RAVNYFSKVKQLPLVKPYL 379 (449)
T ss_dssp STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHH------HHHHHHHHTTCTTTTHHHH
T ss_pred CChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcH------HHHHHHHHcCCcHHHHHHH
Confidence 6544 5677888888888887 55566778888877 44432 3345567778877777777
Q ss_pred HHHHh
Q 006937 426 EQCLK 430 (625)
Q Consensus 426 ~~al~ 430 (625)
+.+..
T Consensus 380 ~~v~~ 384 (449)
T 1b89_A 380 RSVQN 384 (449)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=191.93 Aligned_cols=188 Identities=14% Similarity=-0.014 Sum_probs=156.5
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006937 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (625)
Q Consensus 185 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (625)
..+|+++.+++..+ ...|++++|++.+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34677777777666 78899999999999999 88899999999999999999999999999999999999
Q ss_pred CcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 006937 257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336 (625)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 336 (625)
++...+..++.++.. .|++++|+..|+++++.+|++..++.++|.++...|++++ +..|+++++++|++..+
T Consensus 465 ~~~~a~~~lg~~~~~-------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a 536 (681)
T 2pzi_A 465 WRWRLVWYRAVAELL-------TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISA 536 (681)
T ss_dssp CCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHH
T ss_pred chHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHH
Confidence 887766655555554 5688888888888888888888888888888888888888 88888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCC
Q 006937 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383 (625)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 383 (625)
++++|.++..+|++++|+..|+++++++|++..++.++|.++...++
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888888888888888888888888888888888888877665
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-19 Score=161.88 Aligned_cols=169 Identities=15% Similarity=0.127 Sum_probs=114.3
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHh----------------HHHHHHHhcCHHHHHHHHHHHHh
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG----------------KGICLQMQNMGRLAFDSFSEAVK 110 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 110 (625)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999988888 77777777777777777777777
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC--ChHHHHHHHHHHHhhCC
Q 006937 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG--NTQDGIQKYYEALKIDP 188 (625)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~--~~~~A~~~~~~~l~~~~ 188 (625)
++|+++.++..+|.++...|++++|+..|+++++++|++..+ +..+|.++...| ....+...+.+++...|
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a-------~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA-------NIFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence 777777777777777777777777777777777777776665 333333333322 23344555555443222
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (625)
Q Consensus 189 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 223 (625)
...+++.+|.++...|++++|+..|+++++++|+
T Consensus 156 -~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 156 -MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp -HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred -hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 1234555666666666666666666666666665
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-16 Score=164.34 Aligned_cols=357 Identities=11% Similarity=-0.037 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 006937 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR---LVEAAESYH 140 (625)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 140 (625)
..+-+..|++.+..+|.+...|..+.......+.++.+...|++++...|.....|...+......++ ++.+..+|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhcCC--CCHHHHHHHHHHHHHhHHHHHHhCCh--------HHHHHHHHHHHhh----CCCCHHHHHHHHHHHH----
Q 006937 141 KALSADP--SYKPAAECLAIVLTDLGTSLKLAGNT--------QDGIQKYYEALKI----DPHYAPAYYNLGVVYS---- 202 (625)
Q Consensus 141 ~al~~~~--~~~~~~~~~a~~~~~l~~~~~~~~~~--------~~A~~~~~~~l~~----~~~~~~~~~~la~~~~---- 202 (625)
+++...| .+...|... .......++. +...+.|++++.. ++.+..+|........
T Consensus 128 Ral~~~~~~~sv~LW~~Y-------l~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSY-------ITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHTCSSSCCCCHHHHHHH-------HHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHhcCCCCCHHHHHHH-------HHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999984 455554332 2222223332 3344788887764 6667777766665433
Q ss_pred -----HcCCHHHHHHHHHHHHHhCCCCH-HHHHHH---------------------------------------------
Q 006937 203 -----ELMQYDTALGCYEKAALERPMYA-EAYCNM--------------------------------------------- 231 (625)
Q Consensus 203 -----~~~~~~~A~~~~~~al~~~~~~~-~~~~~l--------------------------------------------- 231 (625)
.+++.+.+..+|++++....... ..|...
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 34456778888888875421111 111000
Q ss_pred --------------------------HHHHHHcCC---------HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhh
Q 006937 232 --------------------------GVIYKNRGD---------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (625)
Q Consensus 232 --------------------------a~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (625)
..+-....+ .+.....|++++...|.++..|...+..+..
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~----- 355 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGE----- 355 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-----
Confidence 000000000 1223456777777777777666666555544
Q ss_pred hhcCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----------CCC-----------C
Q 006937 277 KLEGDINQGV-AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----------NPH-----------C 333 (625)
Q Consensus 277 ~~~~~~~~A~-~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----------~~~-----------~ 333 (625)
.|+.++|. ..|++++...|.+...+..++.+....|++++|...|++++.. .|. .
T Consensus 356 --~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 356 --KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp --HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 45667786 8888888888888888888888888888888898888888864 242 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI-KPNFSQSLNNLGVVYTVQGK-MDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (625)
..+|...+.+..+.|+.+.|...|.+|++. .+....++...+.+....++ ++.|..+|+++++..|+++..+...+..
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 457888888888888888899999988877 44456677777777666654 8899999999999988888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 006937 412 YRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
....|+.+.|...|++++...|+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHhCCCHHHHHHHHHHHHHhcCC
Confidence 88889999999999999988874
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=153.27 Aligned_cols=168 Identities=18% Similarity=0.218 Sum_probs=88.2
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 006937 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (625)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 163 (625)
.+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+... +..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ 82 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV-------ATVL 82 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-------HHHH
Confidence 344444444444444444444444444444444444444444444555555555555544444444332 3344
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 006937 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243 (625)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 243 (625)
|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 44444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCCCc
Q 006937 244 AIACYERCLAVSPNF 258 (625)
Q Consensus 244 A~~~~~~al~~~~~~ 258 (625)
|+.+++++++..|++
T Consensus 163 A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 163 ALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCc
Confidence 655555555555444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=154.47 Aligned_cols=145 Identities=15% Similarity=0.087 Sum_probs=83.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 006937 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133 (625)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (625)
+|.++..+|++++|+..+++++..+|+++..++.+|.+|+..|++++|+..|+++++++|+++.++..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34555555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK-YYEALKIDPHYAPAYYNLGVVYSELM 205 (625)
Q Consensus 134 ~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~-~~~~l~~~~~~~~~~~~la~~~~~~~ 205 (625)
+|+..|+++++++|++..+ +..+|.++...|++++|... ++++++++|+++.++..++.++...|
T Consensus 83 ~A~~~~~~al~~~p~~~~~-------~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDL-------VLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 6666666666666655544 44455555555555544443 35555555555555555555555544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-19 Score=160.12 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=147.5
Q ss_pred HHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 006937 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEMLKFDMAIVFYELAFHFNPH 332 (625)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~~~~~ 332 (625)
+...|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++++|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 4445666666899999999999999999999999999 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006937 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGV 410 (625)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (625)
++.++..+|.++...|++++|+.+|+++++++|+++.++.++|.+|...|+ ...+...+++++...|. ..+++.+|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987764 45667778777643332 347888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 411 LYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
++...|++++|+.+|+++++++|+..
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999843
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-18 Score=154.48 Aligned_cols=190 Identities=13% Similarity=0.042 Sum_probs=158.8
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHH---HH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC---AH 119 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~ 119 (625)
.+++.++.+|..++..|+|++|+..|+++++..|.++ .+++.+|.+++..|++++|+..|+++++.+|+++. ++
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 3567899999999999999999999999999998864 78999999999999999999999999999999865 78
Q ss_pred HHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 006937 120 THCGILYKD------------------EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (625)
Q Consensus 120 ~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~ 181 (625)
+.+|.++.. .|++++|+..|+++++..|++..+... ...++.+...
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a----~~~l~~~~~~------------ 145 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA----TKRLVFLKDR------------ 145 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH----HHHHHHHHHH------------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH----HHHHHHHHHH------------
Confidence 999998876 579999999999999999998765332 1112111100
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 006937 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (625)
Q Consensus 182 ~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (625)
.......+|.+|...|++++|+..|+++++..|+++ .++..+|.++..+|++++|+..++++....|++
T Consensus 146 --------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 146 --------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 122345778999999999999999999999988875 678999999999999999999999988888876
Q ss_pred H
Q 006937 259 E 259 (625)
Q Consensus 259 ~ 259 (625)
.
T Consensus 218 ~ 218 (225)
T 2yhc_A 218 L 218 (225)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.6e-17 Score=152.20 Aligned_cols=198 Identities=11% Similarity=0.034 Sum_probs=160.6
Q ss_pred HHHHHHhCCCHH-HHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcC----------HHHHHHHHHHHHhcCCCcHHHHHHH
Q 006937 54 YANILRSRNKFV-DALALYEIVLEKDSGNVEAHIGKGICLQMQNM----------GRLAFDSFSEAVKLDPQNACAHTHC 122 (625)
Q Consensus 54 ~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l 122 (625)
........|++. +|+.++.+++..+|++..+|...+.++...+. +++++.++..++..+|.+..+|...
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR 114 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 114 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344445677775 79999999999999999999999999988776 6889999999999999999999999
Q ss_pred HHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC-hHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 006937 123 GILYKDEGR--LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN-TQDGIQKYYEALKIDPHYAPAYYNLGV 199 (625)
Q Consensus 123 a~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~ 199 (625)
+.++...++ +++++.++.++++.+|.+..+|. ..+.+....|. ++++++++.++++.+|.+..+|..++.
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~-------~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ 187 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADERNFHCWD-------YRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHH-------HHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHH-------HHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999884 89999999999999999988844 44444455566 589999999999999999999999999
Q ss_pred HHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhc
Q 006937 200 VYSEL--------------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----------GDLESAIACYERCLAV 254 (625)
Q Consensus 200 ~~~~~--------------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~ 254 (625)
++... +.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++.
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 88877 4588899999999999999999887665555544 2355666666666666
Q ss_pred CCCc
Q 006937 255 SPNF 258 (625)
Q Consensus 255 ~~~~ 258 (625)
.|++
T Consensus 268 ~pd~ 271 (331)
T 3dss_A 268 EPEN 271 (331)
T ss_dssp CTTC
T ss_pred Cccc
Confidence 6655
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9.1e-19 Score=167.10 Aligned_cols=226 Identities=18% Similarity=0.230 Sum_probs=177.1
Q ss_pred HcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCcHHHHhhHHHHH
Q 006937 203 ELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----PNFEIAKNNMAIAL 269 (625)
Q Consensus 203 ~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~ 269 (625)
..|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++.. ++.+ ..+.++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~ 88 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP----AVAATL 88 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH----HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch----HHHHHH
Confidence 345666666666666552 25567788889999999999999999999988774 2222 345577
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCC
Q 006937 270 TDLGTKVKLEGDINQGVAYYKKALYY--------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHC 333 (625)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~ 333 (625)
..+|.++...|++++|+.++++++.. +|....++..+|.++...|++++|+.+++++++. .|..
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 78888888899999999999999988 4666789999999999999999999999999998 6667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhC
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYTVQGK------MDAAAEMIEKAIAAN 398 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~ 398 (625)
..++..+|.++...|++++|+.++++++++ .+.....+..++..+...+. +.++...++......
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence 889999999999999999999999999986 44556677777777776554 444444444444445
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 399 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
|....++..+|.+|..+|++++|..+|+++++..
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 6667899999999999999999999999999763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=166.35 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=132.1
Q ss_pred hcCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHH
Q 006937 95 QNMGRLAFDSFSEAVKL--------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD-----PSYKPAAECLAIVLT 161 (625)
Q Consensus 95 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~a~~~~ 161 (625)
.|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++... ++.+. .+.++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~ 89 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA----VAATLN 89 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH----HHHHHH
Confidence 45556666666666552 25567788889999999999999999999988764 33333 355689
Q ss_pred HhHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Q 006937 162 DLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYA 225 (625)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~ 225 (625)
.+|.++...|++++|+..+++++.. +|....++..+|.++...|++++|+.+++++++. .|...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999999988 4667889999999999999999999999999998 67778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 226 EAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (625)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (625)
.++..+|.++...|++++|+.+++++++..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999863
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-16 Score=148.84 Aligned_cols=247 Identities=12% Similarity=0.053 Sum_probs=140.6
Q ss_pred HhCChH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006937 169 LAGNTQ-DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ----------YDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (625)
Q Consensus 169 ~~~~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 237 (625)
..|.+. +|+..+.+++..+|++..+|+..+.++...+. +++++.+++.++..+|.+..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 345544 67888888888888888888888887776655 5667777777777777777777777777776
Q ss_pred cCC--HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 006937 238 RGD--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (625)
Q Consensus 238 ~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 315 (625)
.++ +++++.++.++++.+|.+..+|.....++..++. .++++++++.++++.+|.+..+|..++.++...+.
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~------~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence 663 6666666666666666666665555555544431 13555566666666666666666555555554411
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHc-----------CCH
Q 006937 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-----------GKM 384 (625)
Q Consensus 316 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----------g~~ 384 (625)
...+ +. .+ -...+.++++++++.+++..+|++..+|+.+..++... +.+
T Consensus 195 ~~~~-----------~~-------~~--~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l 254 (331)
T 3dss_A 195 QPDS-----------GP-------QG--RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVL 254 (331)
T ss_dssp CC--------------------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred cccc-----------cc-------cc--ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence 0000 00 00 00002344455555555555555555444333333332 345
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYR---DAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
+++++.++++++..|++...+..++.+.. ..|..++...++.+.+++||-....+..
T Consensus 255 ~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d 314 (331)
T 3dss_A 255 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 314 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHH
Confidence 66666666666666666444433333222 2456666777777777777765554443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-17 Score=151.69 Aligned_cols=182 Identities=12% Similarity=0.019 Sum_probs=137.3
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
++..++.+|..++..|++++|+..|+++++..|.++ .+++.+|.++...|++++|+..|+++++..|++... .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~----~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----D 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH----H
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH----H
Confidence 467899999999999999999999999999998764 689999999999999999999999999999998753 1
Q ss_pred HHHHHhHHHHHH------------------hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 158 IVLTDLGTSLKL------------------AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (625)
Q Consensus 158 ~~~~~l~~~~~~------------------~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 219 (625)
.+++.+|.++.. .|++++|+..|+++++..|++..+...+..+....+
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-------------- 144 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-------------- 144 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH--------------
Confidence 224455555544 456666666666666666665543322211111000
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhchhhhhcCCHH
Q 006937 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKVKLEGDIN 283 (625)
Q Consensus 220 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~ 283 (625)
........+|.++...|++++|+..|+++++..|+++ .++..++.++..+|........++
T Consensus 145 ---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 145 ---RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp ---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 0012336789999999999999999999999999976 578899999999998765544443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=141.21 Aligned_cols=116 Identities=21% Similarity=0.258 Sum_probs=82.5
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006937 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (625)
Q Consensus 327 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (625)
..++|+.+..+.++|..+++.|++++|+..|+++++++|.++.++.++|.++..+|++++|+..|+++++++|++..+++
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34566666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
.+|.++..+|++++|+..|+++++++|++..++.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 777777777777777777777777777777666553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-18 Score=139.80 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=115.1
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 006937 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (625)
Q Consensus 292 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (625)
+..++|+.++.+..+|..++..|++++|+..|+++++++|.++.++.++|.++..+|++++|+..|+++++++|+++.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006937 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (625)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (625)
..+|.++..+|++++|+..|+++++++|++.+++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998874
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-16 Score=146.15 Aligned_cols=188 Identities=11% Similarity=0.035 Sum_probs=155.8
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-
Q 006937 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-G- 239 (625)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g- 239 (625)
+..+....+..++|++.+.+++..+|++..+|+..+.++...| .+++++..+++++..+|++..+|...+.++... +
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence 3334444566789999999999999999999999999999999 599999999999999999999999999999998 8
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhh-hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC---
Q 006937 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--- 315 (625)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--- 315 (625)
++++++.++.++++.+|++..++.....++..++.... ....+.+++++++++++.+|.+..+|..++.++...++
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999998888887763210 01123478888888888888888888888888877776
Q ss_pred ----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 006937 316 ----FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (625)
Q Consensus 316 ----~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 350 (625)
++++++++++++..+|++..+|+.+..++...|+.
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 67777777777777888777777777777766653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=146.00 Aligned_cols=116 Identities=9% Similarity=0.089 Sum_probs=104.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 321 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
..+++++.++|++..+++.+|.++...|++++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 44667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999998865
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=146.86 Aligned_cols=168 Identities=13% Similarity=0.003 Sum_probs=116.3
Q ss_pred CCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006937 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158 (625)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 158 (625)
|...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| +.......+.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 444455666666666666666666666666666666666666666666666666666666666666666 4433221111
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 006937 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYK 236 (625)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~ 236 (625)
+ .+...+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..+|.++.
T Consensus 82 ~------~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 82 L------ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp H------HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred H------HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 1 01112233457888888888888888888888888888888888888888888888765 558888888888
Q ss_pred HcCCHHHHHHHHHHHHh
Q 006937 237 NRGDLESAIACYERCLA 253 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~ 253 (625)
..|+.++|+..|++++.
T Consensus 156 ~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHCSSCHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 88888888888888764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-16 Score=147.93 Aligned_cols=266 Identities=16% Similarity=0.028 Sum_probs=185.4
Q ss_pred HhHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 49 KDALSYANILRSR-NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 49 ~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
......-...... +..++|++++++++..+|++..+|..++.++...| .+++++..+++++..+|++..+|...+.++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3344444444444 44578999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHc-C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChH--------HHHHHHHHHHhhCCCCHHHHHH
Q 006937 127 KDE-G-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ--------DGIQKYYEALKIDPHYAPAYYN 196 (625)
Q Consensus 127 ~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~--------~A~~~~~~~l~~~~~~~~~~~~ 196 (625)
... + ++++++.++.++++.+|++..+ +...+.+....+.++ ++++.++++++.+|.+..+|..
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~A-------W~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~ 206 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHT-------WAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW 206 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHH-------HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 888 7 8899999999999999998877 666777777777666 8888888888888888888888
Q ss_pred HHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH
Q 006937 197 LGVVYSELMQ-------YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (625)
Q Consensus 197 la~~~~~~~~-------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 269 (625)
++.++...++ ++++++++.+++..+|++..+|+.+..++...|+...- .+. ..-|..... +.
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~--~~~---~~~~~~~~~------~~ 275 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP--ILP---AILPYTASK------LN 275 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG--GHH---HHGGGTC----------
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc--ccc---ccccccccc------cc
Confidence 8888888776 67888888888888888888887777777776664100 000 000000000 00
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHH------hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHH
Q 006937 270 TDLGTKVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF-HFNPHCAEACNNLGV 342 (625)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~l------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~la~ 342 (625)
. ...+....+...+ ...+..+.++..++.+|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 276 ~----------~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 276 P----------DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp --------------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred c----------cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 0 0000001111111 1124556677777777777777777777777765 456666665555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=146.63 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=147.8
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
.+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...| ++.....++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999999999999999999999 8877766665533
Q ss_pred -HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHc
Q 006937 128 -DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSEL 204 (625)
Q Consensus 128 -~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~ 204 (625)
..++..+|+..++++++.+|++... ++.+|.++...|++++|+..|+++++.+|+. ..++..++.++...
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFEL-------ACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 3334456899999999999999877 7788888999999999999999999999875 66999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 006937 205 MQYDTALGCYEKAAL 219 (625)
Q Consensus 205 ~~~~~A~~~~~~al~ 219 (625)
|+.++|+..|++++.
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.9e-17 Score=153.57 Aligned_cols=169 Identities=14% Similarity=0.020 Sum_probs=157.1
Q ss_pred CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
.|.+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~----- 187 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ----- 187 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH-----
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH-----
Confidence 488999999999999999999999999999999999999999999999999999999999999999999954332
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 006937 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIY 235 (625)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~ 235 (625)
....+..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++
T Consensus 188 --~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 188 --GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp --HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred --HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 44556667778889999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 006937 236 KNRGDLESAIACYERCLA 253 (625)
Q Consensus 236 ~~~g~~~~A~~~~~~al~ 253 (625)
...|+.++|...|++++.
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 999999999999999874
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=159.24 Aligned_cols=208 Identities=13% Similarity=0.063 Sum_probs=147.1
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM-QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (625)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (625)
+..|++++|.++++++.+..+.. ++. .+++++|+..|.++ |.+|...|++++|+.
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHH
Confidence 35688999999999998876642 112 58899999998876 567888999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 006937 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDTAL 211 (625)
Q Consensus 138 ~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~ 211 (625)
.|.+++.+.+.... ....+.++..+|.++...|++++|+.+|++++++.+. ...++.++|.+|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 99999987654322 2234667888899999999999999999999887432 24577888888888 8888888
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHH
Q 006937 212 GCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (625)
Q Consensus 212 ~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (625)
.+|++++++.+.. ..++.++|.++..+|++++|+.+|++++.+.+.... ....+..+..+|.++...|++++|
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888776532 567778888888888888888888888876554321 112222333333333334444444
Q ss_pred HHHHHHHH
Q 006937 286 VAYYKKAL 293 (625)
Q Consensus 286 ~~~~~~~l 293 (625)
+..|++++
T Consensus 215 ~~~~~~al 222 (307)
T 2ifu_A 215 QKCVRESY 222 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 44444444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=159.23 Aligned_cols=209 Identities=20% Similarity=0.178 Sum_probs=134.9
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (625)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 248 (625)
.|++++|.++++++.+..+.. ++. .+++++|..+|.++ |.++...|++++|+..|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 455666666666666554431 122 45666666666554 44566666666666666
Q ss_pred HHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006937 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328 (625)
Q Consensus 249 ~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 328 (625)
.+++++.+.... .... ..++..+|.++...|++++|+.+|+++++
T Consensus 60 ~~al~~~~~~~~-~~~~----------------------------------a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 104 (307)
T 2ifu_A 60 LQEAEAHANNRS-LFHA----------------------------------AKAFEQAGMMLKDLQRMPEAVQYIEKASV 104 (307)
T ss_dssp HHHHHHHHHTTC-HHHH----------------------------------HHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHH----------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 666654332110 0111 23455566666666666666666666666
Q ss_pred hCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 329 FNPH------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 329 ~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (625)
+.+. ...++.++|.+|.. |++++|+.+|++++++.+.. ..++.++|.++..+|++++|+.+|++++.
T Consensus 105 l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 105 MYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5321 14566777777777 88888888888887775543 45777888888888888888888888887
Q ss_pred hCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 397 ANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 397 ~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
+.|++ ..++..+|.++..+|++++|+.+|++++ ++|+.....
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSH
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCH
Confidence 75432 3467778888888888888888888888 888766544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.6e-18 Score=154.87 Aligned_cols=238 Identities=11% Similarity=0.012 Sum_probs=188.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 006937 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM-------GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (625)
Q Consensus 195 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (625)
+..|.-+ ..+++..|.+.|.++++.+|...++|..+ +.++...++..+++..+.+.+.+.|.....++.+.-
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3344444 57899999999999999999999999999 889999999999999999999998876544433111
Q ss_pred HH--HHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 268 AL--TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (625)
Q Consensus 268 ~~--~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 345 (625)
.| ..+ . -.+-.++...++.++...|++++|.+.|+.++...|.+. ..+.+|.++.
T Consensus 90 ~y~~~~~-----~-----------------v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~ 146 (282)
T 4f3v_A 90 LYGDITY-----P-----------------VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG 146 (282)
T ss_dssp TTCCCEE-----E-----------------CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH
T ss_pred ccccccc-----c-----------------cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH
Confidence 11 000 0 001145677889999999999999999999999999888 9999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHH
Q 006937 346 DRDNLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PT-YAEAYNNLGVLYRDAGSISL 420 (625)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~ 420 (625)
+.+++++|+.+|+++....+.. ..+++.+|.++..+|++++|+.+|++++... |. ..++++.+|.++.++|+.++
T Consensus 147 ~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~de 226 (282)
T 4f3v_A 147 AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESA 226 (282)
T ss_dssp HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHH
T ss_pred HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999887753221 3589999999999999999999999998654 55 67899999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHH
Q 006937 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 458 (625)
Q Consensus 421 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (625)
|...|++++..+|+ ..+... +....|...-...+.+
T Consensus 227 A~~~l~~a~a~~P~-~~~~~a-L~~~~~~~~~t~~~~i 262 (282)
T 4f3v_A 227 AVALLEWLQTTHPE-PKVAAA-LKDPSYRLKTTTAEQI 262 (282)
T ss_dssp HHHHHHHHHHHSCC-HHHHHH-HHCTTCCCCCCCHHHH
T ss_pred HHHHHHHHHhcCCc-HHHHHH-HhCCCCCCCCCcHHHH
Confidence 99999999999999 555443 3444554444444433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-16 Score=151.02 Aligned_cols=161 Identities=9% Similarity=0.025 Sum_probs=134.0
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (625)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 349 (625)
..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..+|+........+..+...++
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA 200 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc
Confidence 33444444567888888888888888888888888888888888888888888888888888766667777777778888
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
.++|+..|+++++.+|++..+++++|.++...|++++|+..|+++++.+|++ ..++..++.++..+|+.++|...|++
T Consensus 201 ~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 201 DTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888887 77888888888888888888888888
Q ss_pred HHh
Q 006937 428 CLK 430 (625)
Q Consensus 428 al~ 430 (625)
++.
T Consensus 281 al~ 283 (287)
T 3qou_A 281 QLY 283 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=168.40 Aligned_cols=165 Identities=16% Similarity=0.044 Sum_probs=134.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (625)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (625)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 006937 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---MQYDTALGCYEKA 217 (625)
Q Consensus 141 ~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~a 217 (625)
++++.+|++... +..+|.++...|++++|++.|+++++.+|++..++..+|.++... |++++|++.++++
T Consensus 82 ~al~~~p~~~~~-------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAAPEHPGI-------ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999998765 778888888899999999999999999999999999999999999 9999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 006937 218 ALERPMYAEAYCNMG 232 (625)
Q Consensus 218 l~~~~~~~~~~~~la 232 (625)
++.+|.....+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999998877776665
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=139.05 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=112.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006937 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (625)
+-..+++++.++|++..+++.+|.++...|++++|+..|++++.++|.++.+|.++|.++...|++++|+..|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33456777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 006937 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (625)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (625)
|+++.+++++|.++..+|++++|+..|++++++.|+..
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999865
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-17 Score=148.03 Aligned_cols=207 Identities=16% Similarity=0.101 Sum_probs=179.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhH-------HHHHHHhcCHHHHHHHHHHHHhcCCCcHH--
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-------GICLQMQNMGRLAFDSFSEAVKLDPQNAC-- 117 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 117 (625)
....++..|.-+ ..+++.+|.+.|.+++..+|+..++|..+ +.++...++..+++..+.+.+.+.|....
T Consensus 6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 345677888876 69999999999999999999999999999 89999999999999999999998876433
Q ss_pred -------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHH
Q 006937 118 -------------------AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178 (625)
Q Consensus 118 -------------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~ 178 (625)
+...++.++...|++++|.+.|..++...|++. . .+.+|.++...+++++|+.
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~-------~~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-V-------AWMKAVVYGAAERWTDVID 156 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-H-------HHHHHHHHHHTTCHHHHHH
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-H-------HHHHHHHHHHcCCHHHHHH
Confidence 445588999999999999999999988777654 3 6778889999999999999
Q ss_pred HHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 179 KYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALER--PM-YAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (625)
Q Consensus 179 ~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (625)
.|+++....+.. ..+++.+|.++..+|++++|+.+|++++... |. .+++++.+|.++..+|+.++|...|++++.
T Consensus 157 ~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 157 QVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999876643221 4589999999999999999999999998654 55 678999999999999999999999999999
Q ss_pred cCCCcHHHHh
Q 006937 254 VSPNFEIAKN 263 (625)
Q Consensus 254 ~~~~~~~~~~ 263 (625)
.+|+ ..+..
T Consensus 237 ~~P~-~~~~~ 245 (282)
T 4f3v_A 237 THPE-PKVAA 245 (282)
T ss_dssp HSCC-HHHHH
T ss_pred cCCc-HHHHH
Confidence 9998 65443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=135.84 Aligned_cols=119 Identities=10% Similarity=-0.006 Sum_probs=106.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 321 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
..|++++.++|++...++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45778888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
++.+++.+|.+|..+|++++|+.+|+++++++|+++...
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999999999999999999999999999999998877653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-17 Score=162.99 Aligned_cols=185 Identities=16% Similarity=0.159 Sum_probs=160.1
Q ss_pred cCCHHHHHHHHHH----HHhcCCCcHHHHhhHHHHHHHhchhh------------hhcCCHHHHHHHHHHHHhhCCCCHH
Q 006937 238 RGDLESAIACYER----CLAVSPNFEIAKNNMAIALTDLGTKV------------KLEGDINQGVAYYKKALYYNWHYAD 301 (625)
Q Consensus 238 ~g~~~~A~~~~~~----al~~~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~A~~~~~~~l~~~~~~~~ 301 (625)
.+.+++|+..++. ++.+.|.. + |...|... ...+++++|+..+++++...|....
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--a-------yg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~ 148 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--A-------FGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQST 148 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--T-------TTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--c-------cCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHH
Confidence 3456777777777 67776664 1 22222221 1456777888888888888888999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (625)
++..+|.++...|++++|+..|++++.+.|.+ ..++.++|.++..+|++++|+.+|+++++++|+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998 699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 006937 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA-IDAYEQCLKI 431 (625)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 431 (625)
+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 5677777754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-15 Score=124.93 Aligned_cols=135 Identities=41% Similarity=0.645 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (625)
.+++.+|.++...|++++|+..++++++..|.+...+..+|.++...|++++|+.++++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
.|++++|+..++++++..|.+..++..+|.++...|++++|..+++++++.+|++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999999999998863
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-17 Score=161.35 Aligned_cols=197 Identities=14% Similarity=0.047 Sum_probs=169.8
Q ss_pred HHHHhCCCHHHHHHHHHH----HHHcCCCCHHHHHhHHHHHH------------HhcCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 56 NILRSRNKFVDALALYEI----VLEKDSGNVEAHIGKGICLQ------------MQNMGRLAFDSFSEAVKLDPQNACAH 119 (625)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~----~l~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (625)
..+...+.+++|+..++. ++...|.. ++..+|.... .++++++|+..+++++...|.++.++
T Consensus 73 ~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~ 150 (336)
T 1p5q_A 73 ENLDLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIV 150 (336)
T ss_dssp GGGTCCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHH
T ss_pred CccccchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHH
Confidence 333345688999999988 88888876 4555554432 56788889999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 006937 120 THCGILYKDEGRLVEAAESYHKALSADPSYK--------PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (625)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (625)
..+|.++...|++++|+..|++++.+.|.+. ......+.++.++|.++...|++++|+..|+++++++|+++
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 230 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 230 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999999999999999999873 12222345689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 006937 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA-IACYERCLAV 254 (625)
Q Consensus 192 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 254 (625)
.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++| ...|++++..
T Consensus 231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 231 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 5567776644
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-16 Score=132.22 Aligned_cols=120 Identities=10% Similarity=0.008 Sum_probs=114.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 006937 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (625)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (625)
...+++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 006937 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (625)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (625)
+++.+++++|.++..+|++++|+..|+++++++|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999999998876543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-14 Score=132.00 Aligned_cols=174 Identities=16% Similarity=0.060 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh---cCCHHHHH
Q 006937 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL---EGDINQGV 286 (625)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~ 286 (625)
|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+... +|.++.. ..++++|+
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~-------lg~~y~~~g~~~~~~~A~ 73 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALAL-------LAQLKIRNPQQADYPQAR 73 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHH-------HHHHTTSSTTSCCHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHH-------HHHHHHcCCCCCCHHHHH
Confidence 44445554443 34555555555555555555555555555432 12221111 1111111 01344444
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHHHHH
Q 006937 287 AYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYKD----RDNLDKAVEC 356 (625)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~~~~~~A~~~ 356 (625)
.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..+ .++.+++++|.+|.. .+++++|+.+
T Consensus 74 ~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 74 QLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 44444322 2344455555555544 4455555555555555444 224555555555555 4455555555
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHh
Q 006937 357 YQMALSIKPNFSQSLNNLGVVYTVQ-G-----KMDAAAEMIEKAIAA 397 (625)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~ 397 (625)
|+++++. +.++.+++++|.+|... | ++++|+.+|+++.+.
T Consensus 152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 5555544 33444455555554432 1 455555555555444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-16 Score=148.10 Aligned_cols=197 Identities=11% Similarity=-0.003 Sum_probs=163.0
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
..+..+..+|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 205 (625)
+...|++++|+..|+++++++|++............ ...++...........+.+..+...++.++ .|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~ 149 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL----------RIAKKKRWNSIEERRIHQESELHSYLTRLI--AA 149 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH----------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HH
Confidence 999999999999999999998865322111111111 112223333333445677777777777765 79
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 006937 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (625)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 254 (625)
++++|++.++++++.+|.+......++.++... +.+++|...|.++.+.
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 150 ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999888888888877776 7789999999988764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.6e-15 Score=133.34 Aligned_cols=177 Identities=14% Similarity=0.018 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 006937 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG----RLVEAAESYH 140 (625)
Q Consensus 65 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 140 (625)
.+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3578889998875 78999999999999999999999999999875 688999999999998 7 8999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhHHHHHH----hCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHH
Q 006937 141 KALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSE----LMQYDTA 210 (625)
Q Consensus 141 ~al~~~~~~~~~~~~~a~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~----~~~~~~A 210 (625)
++.+ +.+..+ ++.+|.++.. .+++++|+.+|+++.+..+ ..+.+++.+|.+|.. .+++++|
T Consensus 78 ~A~~--~g~~~a-------~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 78 KAVE--AGSKSG-------EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHH--TTCHHH-------HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHH--CCCHHH-------HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9976 455555 6777777776 7899999999999999887 358999999999999 8999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCC
Q 006937 211 LGCYEKAALERPMYAEAYCNMGVIYKNR-G-----DLESAIACYERCLAVSP 256 (625)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~~ 256 (625)
+.+|+++++. +.++.+++.+|.+|... | ++++|+.+|+++.+...
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999998 66778999999999864 3 89999999999998754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-16 Score=130.54 Aligned_cols=120 Identities=10% Similarity=0.007 Sum_probs=100.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 321 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
..|++++..+|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
++.+++.+|.+|..+|++++|+.+|+++++++|+++....
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 8888888888888888888888888888888888776543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.64 E-value=8.7e-16 Score=129.41 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=114.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 006937 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (625)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (625)
..+++++..+|++...++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006937 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (625)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (625)
++.+++.+|.++..+|++++|+..|+++++++|+++........+..
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999988766555544443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=142.39 Aligned_cols=193 Identities=14% Similarity=0.088 Sum_probs=140.4
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 006937 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (625)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 238 (625)
.+..+|..+...|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++.+|++..+++.+|.++...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 37788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 006937 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 318 (625)
Q Consensus 239 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~ 318 (625)
|++++|+..|+++++++|++............. ..++
T Consensus 86 g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----------~~~~--------------------------------- 122 (281)
T 2c2l_A 86 ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR----------IAKK--------------------------------- 122 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH----------HHHH---------------------------------
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----------HHHH---------------------------------
Confidence 999999999999998887543221111111111 0111
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 006937 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIAA 397 (625)
Q Consensus 319 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 397 (625)
...........+.+..+...++.++ .|++++|++.++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 123 -~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 123 -KRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp -HHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred -HHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1111112223444455555555543 47777777777777777777777767776666665 6677788888777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=131.27 Aligned_cols=133 Identities=16% Similarity=0.278 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHc
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 381 (625)
.++.+|.++...|++++|+..|++++ . .++.++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 46788999999999999999999885 3 36889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 006937 382 GKMDAAAEMIEKAIAANPTYA----------------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (625)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (625)
|++++|+..|+++++..|++. .+++++|.++..+|++++|+.+|+++++++|++..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 999999999999999887765 99999999999999999999999999999998744
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=119.72 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (625)
..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHH
Q 006937 381 QGKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLY 412 (625)
Q Consensus 381 ~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 412 (625)
+|++++|+..|+++++++ |++..++..++.+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 555555555555555555 44444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-14 Score=118.32 Aligned_cols=133 Identities=38% Similarity=0.601 Sum_probs=126.3
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (625)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 347 (625)
++..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 34556667777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
|++++|+.+++++++..|.+..++..+|.++...|++++|...+++++..+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999886
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-15 Score=130.04 Aligned_cols=128 Identities=17% Similarity=0.212 Sum_probs=110.1
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 006937 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YTVQGKM--DAA 387 (625)
Q Consensus 311 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~--~~A 387 (625)
...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4567788888888888888888888888999999999999999999999999999989999999998 7788998 999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
+..++++++.+|++..+++.+|.++...|++++|+.+|+++++++|++...
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 999999999999999999999999999999999999999999999987543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.61 E-value=8.7e-12 Score=127.44 Aligned_cols=370 Identities=9% Similarity=-0.048 Sum_probs=253.9
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhc---CCCcHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKL---DPQNACAHTH 121 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~ 121 (625)
..++..+..+...+-.|+++.+..+|++++...| +.+.|..........+. .+.....|+.++.. +|.+..+|..
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 4678888889888888999999999999999888 78888888887777663 45567788888874 6778888888
Q ss_pred HHHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--------HHHHHHhCChHHHHHHHHHHHhhCCC
Q 006937 122 CGILYK----DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL--------GTSLKLAGNTQDGIQKYYEALKIDPH 189 (625)
Q Consensus 122 la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l--------~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (625)
....+. .+++.+.+...|++++..-..+...... ....+.. ..+......+..|...++.+....+.
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~-~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWK-DFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHH-HHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 887654 3567889999999999953332221110 0000000 00111223445555556655544322
Q ss_pred -CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 006937 190 -YAPAYYNLGVVYSEL--MQ-----YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (625)
Q Consensus 190 -~~~~~~~la~~~~~~--~~-----~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (625)
+...|..+...-... +- .+.....|++++...|..+.+|...+..+...|+.++|...|++++.. |.+...
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l 248 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFL 248 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHH
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHH
Confidence 344554444432221 10 345778999999999999999999999999999999999999999999 987655
Q ss_pred HhhHHHHHHHhchhhhhcCCHHHHHHHHHHH------HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 006937 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKA------LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335 (625)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 335 (625)
+...+... .+... ++.....+... ....+....+|...+......++.+.|...|+++ ...+....
T Consensus 249 ~~~y~~~~-e~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~ 320 (493)
T 2uy1_A 249 SLYYGLVM-DEEAV------YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPH 320 (493)
T ss_dssp HHHHHHHT-TCTHH------HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHH
T ss_pred HHHHHhhc-chhHH------HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChH
Confidence 44322210 11100 11111100000 0000112356777777777788899999999999 43334566
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006937 336 ACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (625)
Q Consensus 336 ~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (625)
.|...|.+....+ +.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++ +.....|......-..
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 7777777666655 5899999999999988888888888888888899999999999887 3467778888877788
Q ss_pred cCCHHHHHHHHHHHHh
Q 006937 415 AGSISLAIDAYEQCLK 430 (625)
Q Consensus 415 ~g~~~~A~~~~~~al~ 430 (625)
.|+.+.+...++++++
T Consensus 397 ~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 397 VGSMELFRELVDQKMD 412 (493)
T ss_dssp HSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999988888888885
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=120.01 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006937 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (625)
Q Consensus 332 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (625)
..+..+..+|..+...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC------CCChhhhhhH
Q 006937 412 YRDAGSISLAIDAYEQCLKID------PDSRNAGQNR 442 (625)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~ 442 (625)
+..+|++++|+..|+++++++ |++..+...+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 999999999999999999999 7777665554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-14 Score=122.79 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 006937 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (625)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 379 (625)
+..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45678888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcC
Q 006937 380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLG--VLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
..|++++|+.+++++++.+|++..++..++ ..+...|++++|+..+.++..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999999999999999999998888775444 44888899999999888876643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-14 Score=132.33 Aligned_cols=247 Identities=13% Similarity=-0.018 Sum_probs=187.5
Q ss_pred HHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 006937 165 TSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243 (625)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 243 (625)
+-.+..|+|..++.-.. +..|. .......+.++|..+|++.... . .+....+...++..+. ++
T Consensus 21 kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~~--~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFLD--TK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHHT--TT---
T ss_pred HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHhc--cc---
Confidence 34456799999998443 33343 3456677788899999887421 1 1122334444444442 22
Q ss_pred HHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 006937 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDMAIV 321 (625)
Q Consensus 244 A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~ 321 (625)
|+..+++.+...+....... .+|.++...|++++|++.+.+.+..+| .+.+++..++.++..+|+.+.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~-------~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELY-------LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHH-------HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHH-------HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 88899988877544443333 445555557899999999999999887 788999999999999999999999
Q ss_pred HHHHHHhhCCC------CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 322 FYELAFHFNPH------CAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMI 391 (625)
Q Consensus 322 ~~~~al~~~~~------~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~ 391 (625)
.++++.+.+|+ .......-+++....| ++.+|...|+++.+..|+ ....+++ ++..+|++++|...+
T Consensus 158 ~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 158 IFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHH
Confidence 99999999983 3333334455566666 999999999999988887 3344444 899999999999999
Q ss_pred HHHHHh----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 392 EKAIAA----------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 392 ~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
+.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++-..
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 988776 48899999999999999998 89999999999999998554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-14 Score=131.58 Aligned_cols=188 Identities=10% Similarity=-0.035 Sum_probs=132.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (625)
Q Consensus 176 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (625)
|+..+++.+...+.....+..+|.++...|++++|++++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77888888777666677778999999999999999999999999887 8899999999999999999999999999998
Q ss_pred cCCC----cHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006937 254 VSPN----FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY--ADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (625)
Q Consensus 254 ~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al 327 (625)
.+|+ +......++.++..+. ...+++.+|..+|+++.+..|+. ...+++ ++..+|++++|...++.++
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~---~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFA---TNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHH---HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence 8883 2233344444433332 11236777777777776666652 222222 6666666666666666555
Q ss_pred hh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 006937 328 HF----------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (625)
Q Consensus 328 ~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (625)
+. +|+++.++.+++.+....|+ +|.++++++.+.+|+++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 54 35566666666666666665 66666666666666665443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-15 Score=155.12 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=174.8
Q ss_pred HHHHHHHhCCCH-HHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcC----------HHHHHHHHHHHHhcCCCcHHHHHH
Q 006937 53 SYANILRSRNKF-VDALALYEIVLEKDSGNVEAHIGKGICLQMQNM----------GRLAFDSFSEAVKLDPQNACAHTH 121 (625)
Q Consensus 53 ~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~ 121 (625)
.........|++ ++|++.++++++.+|++..+|..++.++...|+ +++++..++++++.+|++..+|..
T Consensus 33 ~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~h 112 (567)
T 1dce_A 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 112 (567)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 334444556655 688999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 122 CGILYKDEG--RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLG 198 (625)
Q Consensus 122 la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (625)
.+.++...+ +++++++.++++++.+|.+..+ |...+.+....| .++++++++.++++.+|.+..+|..++
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~a-------W~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~ 185 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEADERNFHC-------WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 185 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhccccccH-------HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHH
Confidence 999999999 7799999999999999999888 455555556667 899999999999999999999999999
Q ss_pred HHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHH
Q 006937 199 VVYSEL--------------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES------------AIACYERCL 252 (625)
Q Consensus 199 ~~~~~~--------------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al 252 (625)
.++... +.++++++++.+++..+|++..+|+.++.++...+++++ |+..|.+++
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i 265 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPL 265 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEE
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccce
Confidence 999885 568999999999999999999999999999999888666 555677777
Q ss_pred hcCCC
Q 006937 253 AVSPN 257 (625)
Q Consensus 253 ~~~~~ 257 (625)
.++|.
T Consensus 266 ~~~~~ 270 (567)
T 1dce_A 266 TVGSR 270 (567)
T ss_dssp CTTBT
T ss_pred ecccc
Confidence 66664
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=125.11 Aligned_cols=115 Identities=27% Similarity=0.373 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006937 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (625)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (625)
+.++..+..+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|+.+|+++++++|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 006937 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (625)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (625)
+|..+|++++|+.+|+++++++|++..++.+..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999999877665443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-14 Score=133.44 Aligned_cols=177 Identities=12% Similarity=0.015 Sum_probs=147.5
Q ss_pred CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006937 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA------CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (625)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (625)
+|.....+...+..+...|++++|+..+.++++..+... ..+..+|.++...|++++|+..+++++...+....
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344556677888899999999999999999999877644 34567888899999999999999999987665432
Q ss_pred HHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 006937 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL---KIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPM- 223 (625)
Q Consensus 152 ~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l---~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~- 223 (625)
.. ..+.++..+|.++...|++++|+.+|++++ +..+++. .+++++|.+|..+|++++|+.+++++++..+.
T Consensus 151 ~~-~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 151 VY-QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp TT-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 22 245678999999999999999999999999 4456543 68999999999999999999999999987532
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 006937 224 -----YAEAYCNMGVIYKNRGDLESA-IACYERCLAVS 255 (625)
Q Consensus 224 -----~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 255 (625)
...+++++|.++...|++++| ..++++++.+.
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 278899999999999999999 88899988653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-14 Score=135.13 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=126.1
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHH------HHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc------
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVE------AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------ 115 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 115 (625)
...+...+..++..|+|++|+..++++++..+.++. .+..+|.++...|++++|+..|+++++..+..
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 344556789999999999999999999998776654 33458888888999999999999999965442
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----
Q 006937 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----- 190 (625)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~----- 190 (625)
..++..+|.+|...|++++|+.+|+++++............+.++.++|.++...|++++|+.++++++++.+..
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 337899999999999999999999999964321111122345556777777777777777777777776653322
Q ss_pred -HHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 006937 191 -APAYYNLGVVYSELM-QYDTALGCYEKAAL 219 (625)
Q Consensus 191 -~~~~~~la~~~~~~~-~~~~A~~~~~~al~ 219 (625)
..+++.+|.++..+| .+++|+.++++++.
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 556666666666666 34666666666654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=126.89 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=120.3
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HH
Q 006937 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNL--DK 352 (625)
Q Consensus 276 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~--~~ 352 (625)
+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006937 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (625)
Q Consensus 353 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (625)
|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++.....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 999999999999999999999999999999999999999999999998765443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-14 Score=128.42 Aligned_cols=151 Identities=17% Similarity=0.188 Sum_probs=133.2
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (625)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 347 (625)
.++.+|..+...|++++|+..|++++ .| ++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 45667777778899999999999985 33 7889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006937 348 DNLDKAVECYQMALSIKPNFS----------------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (625)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (625)
|++++|+..|+++++..|.+. .++.++|.++...|++++|+..++++++.+|++.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--------- 155 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR--------- 155 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG---------
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc---------
Confidence 999999999999999888776 8999999999999999999999999999999862
Q ss_pred HHHcCCHHHHHHHHHHHHhcCC
Q 006937 412 YRDAGSISLAIDAYEQCLKIDP 433 (625)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p 433 (625)
.+..++|+..+++.....|
T Consensus 156 ---~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 156 ---HSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp ---GGHHHHHHHHHHTTCCCCC
T ss_pred ---cchHHHHHHHHHhcccccc
Confidence 3455666666665544444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=132.51 Aligned_cols=174 Identities=11% Similarity=0.079 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 006937 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 303 (625)
Q Consensus 224 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 303 (625)
....+...+..+...|++++|+..++++++..+...... .... .+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~-~~~~----------------------------------~~ 118 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-QFLQ----------------------------------WQ 118 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH-HHHH----------------------------------HH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH-HHHH----------------------------------HH
Confidence 344556677778888888888888888888776543221 1111 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---ccCCCCH----HH
Q 006937 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMAL---SIKPNFS----QS 370 (625)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~~~~~----~~ 370 (625)
+.+|.++...|++++|+..+++++...+.. ..++..+|.+|...|++++|+.+|++++ +..|++. .+
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 198 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 345555555666666666666666543322 4566677777777777777777777776 3344432 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 006937 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISLA-IDAYEQCLKID 432 (625)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 432 (625)
+.++|.+|..+|++++|+.++++++++.++ ...+++++|.+|..+|++++| ..+|++++.+.
T Consensus 199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 777777777777777777777777766422 266778888888888888888 77788887764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=120.67 Aligned_cols=108 Identities=11% Similarity=0.068 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPN-------FS-----QSLNNLGVVYTVQGKMDAAAEMIEKAIAA----- 397 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 397 (625)
..+..+|..+...|++++|+..|+++++++|+ +. .+|.++|.++..+|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44556666666666666666666666666666 33 38899999999999999999999999999
Q ss_pred --CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 398 --NPTYAEAY----NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 398 --~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
+|++..+| +++|.++..+|++++|+..|+++++++|++......+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999 9999999999999999999999999999988776553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-14 Score=117.71 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 006937 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (625)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (625)
|.....+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|++..++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 44566777788888888888888888888888888778888888888888888888888888888888877788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006937 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (625)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (625)
++...|++++|+.+++++++.+|++..++..++.++..+|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888887777777777777776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-14 Score=116.09 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=98.5
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 160 (625)
.+.++..+|.+++..|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..|++++++.|++...+..++.++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999888777777778888
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 006937 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (625)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (625)
..+|.++...|++++|++.|++++...|+ +....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 88999999999999999999999888775 44433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.9e-14 Score=144.76 Aligned_cols=169 Identities=10% Similarity=0.039 Sum_probs=159.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK----------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD- 348 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~- 348 (625)
...++|++.+++++..+|++..+|+..+.++...++ +++++..++++++.+|++..+|...+.++...+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 455788999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----------
Q 006937 349 -NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA----------- 415 (625)
Q Consensus 349 -~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------- 415 (625)
++++++++++++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|..++.++..+
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 7799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred ---CCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhh
Q 006937 416 ---GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 448 (625)
Q Consensus 416 ---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 448 (625)
+.+++|++++.+++.++|++..+|..+...+..
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 568999999999999999999999887655543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=117.10 Aligned_cols=101 Identities=25% Similarity=0.330 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYN 406 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 406 (625)
+.++.++|..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777776543 35777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 407 NLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
++|.++..+|++++|+++|+++++..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 8888888888888888888888888775
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-15 Score=132.86 Aligned_cols=151 Identities=20% Similarity=0.154 Sum_probs=113.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----------------EACNNLGV 342 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----------------~~~~~la~ 342 (625)
.+.++++.+.+.......+.....+..+|..+...|++++|+..|++++.+.|.++ .++.++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34555555555544444444566788888888888888888888888888888776 78888888
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006937 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (625)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (625)
++...|++++|+.+++++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999988888888888889999988999999999999998888888888888888888888777766
Q ss_pred -HHHHHHH
Q 006937 423 -DAYEQCL 429 (625)
Q Consensus 423 -~~~~~al 429 (625)
..|.+.+
T Consensus 177 ~~~~~~~f 184 (198)
T 2fbn_A 177 KLTFGGMF 184 (198)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 4444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-14 Score=116.67 Aligned_cols=121 Identities=22% Similarity=0.281 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 006937 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (625)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 377 (625)
.....+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.+++++++..|+++.++..+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006937 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (625)
Q Consensus 378 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (625)
+...|++++|+.+++++++.+|++..++..++.++..+|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888887764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-14 Score=115.64 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006937 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (625)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (625)
.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCh
Q 006937 416 GSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 416 g~~~~A~~~~~~al~~~p~~~ 436 (625)
|++++|+..|+++++++|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.6e-14 Score=115.54 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=111.2
Q ss_pred ccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 006937 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (625)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (625)
..+.....++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~ 171 (625)
|.++...|++++|+..|+++++.+|.+... +..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEA-------ADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHH-------HHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHH-------HHHHHHHHHHhc
Confidence 999999999999999999999999988776 444555554444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-14 Score=121.81 Aligned_cols=116 Identities=22% Similarity=0.219 Sum_probs=108.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 006937 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (625)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (625)
+.....++.+|.++...|++++|+..|+++++++|.+..++..+|.++...|++++|+.+|+++++++|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006937 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (625)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (625)
++..+|++++|+.+|+++++++|++..++..++...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999999999999999999988776666543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=132.70 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=136.2
Q ss_pred chhhhhcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 006937 273 GTKVKLEGDINQGVAYYKKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNL 340 (625)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l 340 (625)
...+...+++++|+..+++++...+..+. .+..+|.++...+++++|+.++++++...+.. ..++.++
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34455678999999999999998877655 33458999999999999999999999964432 4479999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 006937 341 GVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNN 407 (625)
Q Consensus 341 a~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 407 (625)
|.+|...|++++|+.+|+++++. .+....++.++|.+|..+|++++|+.++++++++.+.. +.++++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999953 22234589999999999999999999999999875433 789999
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 006937 408 LGVLYRDAG-SISLAIDAYEQCLKIDP 433 (625)
Q Consensus 408 la~~~~~~g-~~~~A~~~~~~al~~~p 433 (625)
+|.+|..+| .+++|+.+|++++.+..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 999999999 47999999999998643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=140.61 Aligned_cols=230 Identities=14% Similarity=0.117 Sum_probs=172.0
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
+...+..|..+...|+|++|++.|.++++..|.........+......+..++ ++..+|.+|.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------al~~l~~~y~ 66 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQET-----------------SILELGQLYV 66 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHH-----------------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHH-----------------HHHHHHHHHH
Confidence 34577888999999999999999999999888765544433333322222222 3467788888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHH
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID------PHYAPAYYNLGVVY 201 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~ 201 (625)
..|++++|.+.+.+++...+...... ....+...++.++...|++++|+.++++++... +....++..+|.++
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQFAKSK-TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTSCHHH-HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 88888888888888877655543321 223446667777778888999999988887652 23467889999999
Q ss_pred HHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchh
Q 006937 202 SELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (625)
Q Consensus 202 ~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~ 275 (625)
...|++++|+.++++++.. .+....++..+|.+|...|++++|..++++++...+.........+.++..+|.+
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 9999999999999999875 2345778999999999999999999999999877554333344556777788888
Q ss_pred hhhcCCHHHHHHHHHHHHhh
Q 006937 276 VKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 276 ~~~~~~~~~A~~~~~~~l~~ 295 (625)
+...+++.+|..+|.+++..
T Consensus 226 ~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 88888888888888887754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-13 Score=116.98 Aligned_cols=135 Identities=14% Similarity=0.066 Sum_probs=124.3
Q ss_pred hhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 006937 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342 (625)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 342 (625)
...+..+..+|..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34566788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHh
Q 006937 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV--VYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~ 397 (625)
++...|++++|+.+|+++++.+|.+..++..++. .+...|++++|+..+.++...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999999999988855544 488899999999999987654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=130.14 Aligned_cols=166 Identities=15% Similarity=0.049 Sum_probs=116.4
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---------HHHHH
Q 006937 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA---------AECLA 157 (625)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~a 157 (625)
..+.+....|++++|.+.+.......+.....+..+|..+...|++++|+..|++++...|.+... .....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 344455556666666666665555555556667777777777777777777777777776665410 11123
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006937 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (625)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 237 (625)
.++..+|.++...|++++|+..++++++.+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 45888999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCHHHHH-HHHHHHH
Q 006937 238 RGDLESAI-ACYERCL 252 (625)
Q Consensus 238 ~g~~~~A~-~~~~~al 252 (625)
.++..++. ..+.+.+
T Consensus 169 ~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHC----------
T ss_pred HHHHHHHHHHHHHHHh
Confidence 88887776 4444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-13 Score=109.48 Aligned_cols=117 Identities=42% Similarity=0.622 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 006937 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (625)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 379 (625)
..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006937 380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (625)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (625)
..|++++|+.+++++++.+|++..++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 7777777777777777777777777777777766544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-15 Score=150.13 Aligned_cols=152 Identities=18% Similarity=0.179 Sum_probs=132.7
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHH
Q 006937 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGV 342 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~ 342 (625)
..+++++|+..++.++...|.....+..+|..+...|++++|+..|+++++++|.+ ..+++++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888888888999999999999999999999999999999988 789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006937 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (625)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (625)
++..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred H-HHHHHH
Q 006937 423 D-AYEQCL 429 (625)
Q Consensus 423 ~-~~~~al 429 (625)
. .|++.+
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 344333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=114.43 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006937 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (625)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (625)
+|.++..+..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 410 VLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
.++..+|++++|+..|+++++++|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 5555555555555555555555555
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.7e-14 Score=116.48 Aligned_cols=107 Identities=18% Similarity=0.083 Sum_probs=100.5
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------CHH-----HHHhHHHHHHHhcCHHHHHHHHHHHHhc---
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-------NVE-----AHIGKGICLQMQNMGRLAFDSFSEAVKL--- 111 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~--- 111 (625)
.+..++..|..++..|+|++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 5678899999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ----CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 006937 112 ----DPQNACAH----THCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (625)
Q Consensus 112 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 153 (625)
+|++..+| +.+|.++..+|++++|+..|++++++.|++....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999 9999999999999999999999999999876553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=112.44 Aligned_cols=103 Identities=19% Similarity=0.242 Sum_probs=94.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
...++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCH
Q 006937 128 DEGRLVEAAESYHKALSADPSYK 150 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~ 150 (625)
..|++++|+..|+++++.+|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999998754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-13 Score=113.35 Aligned_cols=124 Identities=16% Similarity=0.077 Sum_probs=113.2
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 006937 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373 (625)
Q Consensus 294 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 373 (625)
..++..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCC
Q 006937 374 LGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRDAGS 417 (625)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~ 417 (625)
+|.++...|++++|+..|+++++.+|+ +..+...+..+......
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 66777777777655443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.6e-13 Score=106.69 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006937 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (625)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (625)
.+..+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444445445455
Q ss_pred CCHHHHHHHHHHHHhcCCCChhhh
Q 006937 416 GSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 416 g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
|++++|..+|+++++.+|++..++
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHH
Confidence 555555555555554444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.3e-13 Score=109.76 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=112.0
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+..+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|+++.++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCCh
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~ 173 (625)
++...|++++|+..++++++..|++... +..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETY-------KSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHH-------HHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHH-------HHHHHHHHHHHhcC
Confidence 9999999999999999999999998776 55556666655654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=117.73 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 372 (625)
..+..+|..++..|++++|+..|++++.. +|.+... ...+|....++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~ 67 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW------------------------VELDRKNIPLYA 67 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH------------------------HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH------------------------HHHHHHHHHHHH
Confidence 45566666666666666666666666665 1111100 011333444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
++|.++..+|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 68 nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 5555555555555555555555555555555555555555555555555555555555555554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=105.59 Aligned_cols=115 Identities=15% Similarity=0.216 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 006937 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378 (625)
Q Consensus 299 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 378 (625)
.+..++.+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006937 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (625)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (625)
...|++++|...++++++.+|++..++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999988753
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-13 Score=120.13 Aligned_cols=157 Identities=19% Similarity=0.180 Sum_probs=131.4
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHH
Q 006937 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLD 351 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~ 351 (625)
..|++++|.+.++......+....++..+|.++...|++++|+..+++++.+ .+....++..+|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4689999999666555433366889999999999999999999999999984 3445788999999999999999
Q ss_pred HHHHHHHHHHcc---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHcCCH
Q 006937 352 KAVECYQMALSI---KPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TY----AEAYNNLGVLYRDAGSI 418 (625)
Q Consensus 352 ~A~~~~~~al~~---~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~ 418 (625)
+|+.++++++++ .+++ ..++.++|.++...|++++|+.++++++...+ .+ ..++..+|.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999999988 4433 45799999999999999999999999997632 12 34678999999999999
Q ss_pred HHHHHHHHHHHhcCCC
Q 006937 419 SLAIDAYEQCLKIDPD 434 (625)
Q Consensus 419 ~~A~~~~~~al~~~p~ 434 (625)
++|..++++++++...
T Consensus 164 ~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.48 E-value=9.5e-15 Score=149.24 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (625)
..+..+|.++...|++++|+..|+++++.+|++..++.++|.++..+|++++|+..++++++++|+++.++.++|.+|..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556677788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCChhhh
Q 006937 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVL--YRDAGSISLAIDAYE-----------QCLKIDPDSRNAG 439 (625)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~~~~ 439 (625)
+|++++|++.|+++++.+|++..++..++.+ +..+|++++|++.++ ++++++|+...+.
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 158 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPK 158 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccc
Confidence 9999999999999999999998888888888 888899999999999 8888888776554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=108.68 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHH
Q 006937 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNN 407 (625)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 407 (625)
+|++..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+++++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 56677778888888888888888888888888888888888888888888888888888888888888888 8888888
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCCCh
Q 006937 408 LGVLYRDA-GSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 408 la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 436 (625)
+|.++... |++++|++++++++...|+++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888888 888888888888888888754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=121.14 Aligned_cols=160 Identities=14% Similarity=0.050 Sum_probs=113.5
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcCC
Q 006937 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK------LDPQNACAHTHCGILYKDEGR 131 (625)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~ 131 (625)
++..|++++|.+.++.+....+....++..+|.++...|++++|+..+++++. ..+....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 46789999999966665543336788999999999999999999999999998 344567789999999999999
Q ss_pred HHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHH
Q 006937 132 LVEAAESYHKALSA---DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HY----APAYYNLGVVYS 202 (625)
Q Consensus 132 ~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~----~~~~~~la~~~~ 202 (625)
+++|+..+++++.. .+++. ...+.++..+|.++...|++++|+..+++++...+ .+ ..++..+|.++.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDP---LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccH---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 99999999999987 33222 12345577777777777777777777777765421 11 223455555555
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 006937 203 ELMQYDTALGCYEKAALE 220 (625)
Q Consensus 203 ~~~~~~~A~~~~~~al~~ 220 (625)
..|++++|+.+++++++.
T Consensus 159 ~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHH
Confidence 566666665555555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-14 Score=144.78 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHhHHHHH
Q 006937 97 MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK--------PAAECLAIVLTDLGTSLK 168 (625)
Q Consensus 97 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~a~~~~~l~~~~~ 168 (625)
++++|+..|++++...|.....+..+|.+++..|++++|+..|++++++.|.+. ........++.++|.++.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444431 112223455888888888
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-
Q 006937 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC- 247 (625)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~- 247 (625)
..|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...+++++|...
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999889999999999998888877643
Q ss_pred HHHHH
Q 006937 248 YERCL 252 (625)
Q Consensus 248 ~~~al 252 (625)
+.+++
T Consensus 409 ~~~~f 413 (457)
T 1kt0_A 409 YANMF 413 (457)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 44443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-11 Score=123.69 Aligned_cols=326 Identities=7% Similarity=-0.075 Sum_probs=180.9
Q ss_pred hCC-CHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHH
Q 006937 60 SRN-KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAE 137 (625)
Q Consensus 60 ~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~ 137 (625)
..| +++.|..+|++++...|. |+++.+..+|++++...| +...|..........++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence 456 488899999999988876 889999999999999888 77788888877777663 455677
Q ss_pred HHHHHHhc---CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 138 SYHKALSA---DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (625)
Q Consensus 138 ~~~~al~~---~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 214 (625)
.|+.++.. ++.+...|......+.... ...++.+.+..+|++++...+.+..-+...-..+....+...+...+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~---~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIE---DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCS---SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhch---hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 88888874 5556555443322211100 12456788999999999864434333322222222222222232222
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHHhchhh--hhcCCHHHHHHHHHH
Q 006937 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKV--KLEGDINQGVAYYKK 291 (625)
Q Consensus 215 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~ 291 (625)
.... ..+..|...++.+....+. ....+..+... ..+.-. ...+..+.....|++
T Consensus 147 ~~~~--------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~--E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 147 GDTL--------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDL--EMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHH--------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH--HHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHh--------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHH--HhcCCccCcchhhHHHHHHHHHH
Confidence 2211 1233344444443332221 11122111111 100000 000013456789999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH----------------------------
Q 006937 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI---------------------------- 343 (625)
Q Consensus 292 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~---------------------------- 343 (625)
++...|..+..|...+..+...|+.++|...|++++.. |.+...+...+..
T Consensus 205 al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 205 ILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhccc
Confidence 99999999999999999999999999999999999999 8876555544433
Q ss_pred ------------HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006937 344 ------------YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (625)
Q Consensus 344 ------------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (625)
..+.++.+.|...|+++ ...+.....+...|.+....+ +.+.|...|+.+++..|+.+..+...+.
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11233444455555555 222223334444444433333 3555555555555555554444444444
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 006937 411 LYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 411 ~~~~~g~~~~A~~~~~~a 428 (625)
.....|+.+.|...|+++
T Consensus 363 ~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHTCHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 444555555555555554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=110.54 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006937 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (625)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (625)
|.+...+..+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..++++++.+|++..+++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3444444444444444445555555555555444444 4445555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
+|.++..+|++++|+.+|+++++++|++..++.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 555555555555555555555555555544443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.1e-13 Score=114.33 Aligned_cols=105 Identities=19% Similarity=0.106 Sum_probs=100.7
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHc------------------CCCCHHHHHhHHHHHHHhcCHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEK------------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (625)
..+..+...|..++..|+|++|+..|++++.. +|.+..++.++|.++..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35788999999999999999999999999998 777778999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006937 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (625)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (625)
+++++|+++.+++.+|.++...|++++|+..|+++++++|++.
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999999999999999999999999987
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-12 Score=104.01 Aligned_cols=64 Identities=36% Similarity=0.417 Sum_probs=25.8
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006937 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147 (625)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 147 (625)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 74 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 3333444444444444444444444444443333333444444444444444444443333333
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=135.11 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=88.8
Q ss_pred hHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343 (625)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 343 (625)
..+..+..+|..+...+++++|+..|++++...|.+.. +...+++.++...+. ..+++++|.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence 34566667777777777777777777777777665431 222333444433321 1478999999
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHH
Q 006937 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAI 422 (625)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~ 422 (625)
+..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 44566788889
Q ss_pred HHHHHHHhcCCCChh
Q 006937 423 DAYEQCLKIDPDSRN 437 (625)
Q Consensus 423 ~~~~~al~~~p~~~~ 437 (625)
..|++++...|+++.
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999999998764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-12 Score=105.96 Aligned_cols=104 Identities=21% Similarity=0.203 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 006937 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 410 (625)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 410 (625)
++.+|.++...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 44555555555555555555555555555554 455555666666666666666666666655555 555666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
++..+|++++|+..|+++++..|++..+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 666666666666666666666665554433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.3e-12 Score=106.79 Aligned_cols=112 Identities=21% Similarity=0.147 Sum_probs=105.9
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (625)
+..+..++.+|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4578899999999999999999999999999999988 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006937 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 156 (625)
+|.++...|++++|+..|+++++.+|++...+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 99999999999999999999999999998775443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-12 Score=105.47 Aligned_cols=106 Identities=23% Similarity=0.174 Sum_probs=100.3
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHC 122 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 122 (625)
+.++.+|..++..|+|++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578999999999999999999999999999988 799999999999999999999999999999999 8889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 154 (625)
|.++...|++++|+..|+++++..|++.....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 99999999999999999999999999877643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-13 Score=111.26 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---
Q 006937 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK----------MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--- 415 (625)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--- 415 (625)
.+++|++.++++++++|+++++|.++|.++...++ +++|+..|+++++++|++..+++++|.+|..+
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 34444444444444444444444444444444443 45777777777777777777777777777766
Q ss_pred --------CCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 416 --------GSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 416 --------g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
|++++|+.+|++|++++|++...+.++
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 489999999999999999987665543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-13 Score=137.08 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=122.6
Q ss_pred HHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (625)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 345 (625)
+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++++|+++.+++++|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34566788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCc
Q 006937 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVV--YTVQGKMDAAAEMIE-----------KAIAANPTY 401 (625)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 401 (625)
.+|++++|++.|+++++++|++..++..++.+ +...|++++|++.++ +++...|+.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999999999999998 889999999999999 777776653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-12 Score=126.88 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAFH----------------FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (625)
..+..+|..+...|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+.+++++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3455666666666666666666666666 667778888889999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423 (625)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (625)
|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999888888888888888888777764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=107.11 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------HHHHHH
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------SQSLNN 373 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~ 373 (625)
..+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4455555666666666666666666666655555556666666666666666666666665555444 555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006937 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (625)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (625)
+|.++...|++++|+.+|+++++..| +......++.+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 55555555555555555555555555 3455555554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=104.02 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=99.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHH
Q 006937 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNN 373 (625)
Q Consensus 296 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~ 373 (625)
+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57778889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCc
Q 006937 374 LGVVYTVQ-GKMDAAAEMIEKAIAANPTY 401 (625)
Q Consensus 374 la~~~~~~-g~~~~A~~~~~~al~~~p~~ 401 (625)
+|.++... |++++|++++++++...|..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999 99999999999999998864
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.4e-13 Score=106.43 Aligned_cols=94 Identities=12% Similarity=0.189 Sum_probs=71.7
Q ss_pred cCCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 347 RDNLDKAVECYQMALSI---KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423 (625)
Q Consensus 347 ~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (625)
+|++++|+.+|++++++ +|++..++..+|.++..+|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777788888888887 477777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCChhhhh
Q 006937 424 AYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 424 ~~~~al~~~p~~~~~~~ 440 (625)
.|+++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 88888888887766543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=107.94 Aligned_cols=87 Identities=21% Similarity=0.333 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC---
Q 006937 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN----------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG--- 382 (625)
Q Consensus 316 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--- 382 (625)
+++|++.++++++++|+++++|.++|.++...++ +++|+..|+++++++|++..+++++|.+|..+|
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 4444444444444444444444444444444433 457777777777777777777777777777664
Q ss_pred --------CHHHHHHHHHHHHHhCCCcH
Q 006937 383 --------KMDAAAEMIEKAIAANPTYA 402 (625)
Q Consensus 383 --------~~~~A~~~~~~al~~~p~~~ 402 (625)
++++|+++|+++++++|++.
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 78888888888888888764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=125.48 Aligned_cols=204 Identities=10% Similarity=0.055 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMY-----------------AEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (625)
Q Consensus 193 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (625)
+....|..+...|++++|++.|.++++..|.. ..++..+|.+|...|++++|.+++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34455666666677777777777766665542 2357788888889999999998888888766
Q ss_pred CCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 006937 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (625)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 329 (625)
+...... ....+...++.++...|++++|+.++++++...+ ....++..+|.++...|++++|+..+++++..
T Consensus 86 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 86 MQFAKSK-TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HTSCHHH-HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHccchH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 5543322 2234556667777778888899888888876532 23567888999999999999999999988765
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 330 ------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 330 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (625)
.+....++..+|.+|...|++++|..++++++...+ .. ...+..+|.++...|++++|..+|.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 233467888899999999999999999998887632 22 34677788888888999999998888876
Q ss_pred h
Q 006937 397 A 397 (625)
Q Consensus 397 ~ 397 (625)
.
T Consensus 245 ~ 245 (434)
T 4b4t_Q 245 S 245 (434)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=126.44 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH-HH
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YT 379 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~ 379 (625)
.+++++|.++..+|++++|+..|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998 44
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHH
Q 006937 380 VQGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
..+..+++...|.+++...|+++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 567788899999999999887653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.4e-13 Score=106.43 Aligned_cols=94 Identities=19% Similarity=0.180 Sum_probs=74.0
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 313 MLKFDMAIVFYELAFHF---NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389 (625)
Q Consensus 313 ~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 389 (625)
.|++++|+..|+++++. +|++..++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 57777888888888887 477778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCcHHHHH
Q 006937 390 MIEKAIAANPTYAEAYN 406 (625)
Q Consensus 390 ~~~~al~~~p~~~~~~~ 406 (625)
.+++++...|+++.+..
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 88888888888776543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-12 Score=108.87 Aligned_cols=134 Identities=25% Similarity=0.266 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------H
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------S 368 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~ 368 (625)
.++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+.++++++++.+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 456677777777777777777777777664321 2477788888888888888888888888764432 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
.++..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|+.++++++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5788888888888999999988888887632 22567888999999999999999999999887544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-11 Score=100.75 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=101.1
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc-------HHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-------ACAH 119 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 119 (625)
.++.++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 467789999999999999999999999999999999999999999999999999999999999998876 8899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
..+|.++...|++++|+..|+++++..| +......++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~ 119 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 9999999999999999999999999988 465544333
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=121.85 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=121.0
Q ss_pred HHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006937 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY----------------YNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (625)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (625)
.......+..+..+|..+...|++++|+..|+++++ ..|....++.++|.++..+|++++|+.+
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 334445566778888888899999999999999998 6777789999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (625)
Q Consensus 323 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 390 (625)
++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++++++.+.
T Consensus 296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.7e-11 Score=103.21 Aligned_cols=140 Identities=20% Similarity=0.256 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------
Q 006937 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (625)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------ 190 (625)
.++..+|.++...|++++|+..++++++..+.... ....+.++..+|.++...|++++|+..+++++...+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45666677777777777777777777665443111 22334567777888888888888888888877764332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 257 (625)
..++..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|+.++++++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999988887532 22567888899999999999999999998876543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-11 Score=98.32 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNN 407 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 407 (625)
...+..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777766 666777
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 006937 408 LGVLYRDAGSISLAIDAYE 426 (625)
Q Consensus 408 la~~~~~~g~~~~A~~~~~ 426 (625)
+|.++..+|++++|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 7777777766666555443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-10 Score=90.99 Aligned_cols=80 Identities=23% Similarity=0.258 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006937 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (625)
Q Consensus 319 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (625)
|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-11 Score=96.24 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=87.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc------HHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------ACAHT 120 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 120 (625)
+++.++.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999998 88899
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 006937 121 HCGILYKDEGRLVEAAESYHK 141 (625)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~ 141 (625)
.+|.++...|+++.|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999888877766554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4e-10 Score=85.94 Aligned_cols=83 Identities=42% Similarity=0.596 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (625)
..++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++.+|++..++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred HcC
Q 006937 414 DAG 416 (625)
Q Consensus 414 ~~g 416 (625)
.+|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-10 Score=91.58 Aligned_cols=87 Identities=23% Similarity=0.270 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 351 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChh
Q 006937 431 IDPDSRN 437 (625)
Q Consensus 431 ~~p~~~~ 437 (625)
+.|+...
T Consensus 82 ~~~~~~~ 88 (115)
T 2kat_A 82 AAQSRGD 88 (115)
T ss_dssp HHHHHTC
T ss_pred hcccccc
Confidence 9886543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=83.12 Aligned_cols=85 Identities=25% Similarity=0.312 Sum_probs=72.1
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
..+..++.+|..+...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34667888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcC
Q 006937 126 YKDEG 130 (625)
Q Consensus 126 ~~~~g 130 (625)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 77654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.6e-10 Score=111.53 Aligned_cols=127 Identities=9% Similarity=-0.040 Sum_probs=105.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCC---H
Q 006937 305 NLGVAYGEMLKFDMAIVFYELAFHF-----NPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNF---S 368 (625)
Q Consensus 305 ~la~~~~~~~~~~~A~~~~~~al~~-----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~---~ 368 (625)
..+..+..+|+|++|+..+++++++ .++ ....+.++|.+|..+|++++|+.++++++++ .|++ .
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3445567889999999999999876 233 4677889999999999999999999999976 3444 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTY---AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
..+.++|.+|..+|++++|+.++++++++ .|++ .+....++.++..++.+++|...|+++.+.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999986 4444 566788999999999999999999998653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-10 Score=88.19 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006937 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (625)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (625)
+..|..+...|++++|+..|+++++.+|++.. ++..+|.++...|++++|+..|+++++.+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45666777777777777777777777777777 77777777777777777777777777777777666543 4
Q ss_pred CHHHHHHHHHHHHhcCCCCh
Q 006937 417 SISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 417 ~~~~A~~~~~~al~~~p~~~ 436 (625)
.+.+++..|+++...+|++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 55667777777777766654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.03 E-value=6.8e-10 Score=86.37 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 006937 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (625)
Q Consensus 364 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (625)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+..|++++++.|++.+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 56777777777777777777777777777777777777777777777777777777777777777777655433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-08 Score=84.47 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=43.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 006937 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD- 414 (625)
Q Consensus 340 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 414 (625)
+|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+.++||.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 444444444444455555544443 344455555555544 44555555555555443 344555555555555
Q ss_pred ---cCCHHHHHHHHHHHHhc
Q 006937 415 ---AGSISLAIDAYEQCLKI 431 (625)
Q Consensus 415 ---~g~~~~A~~~~~~al~~ 431 (625)
.+++++|+.+|+++.+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHC
Confidence 45555555555555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.5e-10 Score=86.41 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=81.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHH-HHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVE-AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (625)
.+..|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++.+|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999887743
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 006937 130 GRLVEAAESYHKALSADPSY 149 (625)
Q Consensus 130 g~~~~A~~~~~~al~~~~~~ 149 (625)
+.+.+++..|++++..+|++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 56778888888887776654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=8.8e-09 Score=85.35 Aligned_cols=121 Identities=21% Similarity=0.296 Sum_probs=106.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAV 354 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~ 354 (625)
.+++++|+.+|+++.+....... +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 46889999999999988754444 999999999999999999999987 689999999999999 89999999
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006937 355 ECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (625)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (625)
.+|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+.. ++.+...|+
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999986 789999999999999 999999999999999874 455555554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-09 Score=83.30 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006937 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (625)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (625)
+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5667777777777777777777777777777777777777777777777777777777777777776644
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-09 Score=106.15 Aligned_cols=134 Identities=16% Similarity=0.021 Sum_probs=108.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhc-----CCC
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEK-----DSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKL-----DPQ 114 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~ 114 (625)
+...+..+..+..+|+|++|+.+++++++. .|++ ...+.++|.+|..+|+|++|+.++++++.+ .|+
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 345566778889999999999999999985 3444 467899999999999999999999999975 344
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHh
Q 006937 115 ---NACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (625)
Q Consensus 115 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 185 (625)
....+.++|.+|..+|++++|+..|++++.+ .|+++.. +.+...++.++..++.+++|...|.++.+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~----~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT----KDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999874 5666655 34456677777777777777777777654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-08 Score=90.87 Aligned_cols=108 Identities=18% Similarity=0.107 Sum_probs=92.4
Q ss_pred hhCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHc-----CCHHHHHH
Q 006937 328 HFNPHCAEACNNLGVIYKD-----RD------NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQ-----GKMDAAAE 389 (625)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~-----~~------~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~ 389 (625)
+.+|++++.++-.|.+... .| ...+|...++++++++|+ +..++..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4467787777766665533 13 357899999999999999 566999999999995 99999999
Q ss_pred HHHHHHHhCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Q 006937 390 MIEKAIAANPTY-AEAYNNLGVLYRD-AGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 390 ~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~ 435 (625)
+|+++++++|+. ..+++.+|..+.. .|++++|.+++++++...|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 9999999999988 599999999999999998874
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-08 Score=90.43 Aligned_cols=185 Identities=11% Similarity=0.018 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhc---------------------CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQN---------------------MGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 65 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
.-.+.+++-++..+|++...+...|..|..-+ ++..|...|.++.+. ...+
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~ra 120 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSS 120 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHH
Confidence 45677888889999999876665555543221 234556666555431 1111
Q ss_pred HHHHHcCCHHHHHH-----HHHH-HHhcCCCCHHHHHHHHHHHHHhHHH----HHHhCChHHHHHHHHHHHhhCCC--CH
Q 006937 124 ILYKDEGRLVEAAE-----SYHK-ALSADPSYKPAAECLAIVLTDLGTS----LKLAGNTQDGIQKYYEALKIDPH--YA 191 (625)
Q Consensus 124 ~~~~~~g~~~~A~~-----~~~~-al~~~~~~~~~~~~~a~~~~~l~~~----~~~~~~~~~A~~~~~~~l~~~~~--~~ 191 (625)
+......+.+++. -+.. +-+.+|++.+.....+.++...+.. ....+...+|...++++++++|+ +.
T Consensus 121 -L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~G 199 (301)
T 3u64_A 121 -LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEG 199 (301)
T ss_dssp -HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred -HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccC
Confidence 1112223332222 1222 3345677777766555554332211 11223467899999999999999 67
Q ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCc
Q 006937 192 PAYYNLGVVYSEL-----MQYDTALGCYEKAALERPMY-AEAYCNMGVIYKN-RGDLESAIACYERCLAVSPNF 258 (625)
Q Consensus 192 ~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 258 (625)
.+|..+|.+|... |+.++|.++|+++++++|+. ...++..|..+.. .|++++|..++++++...|..
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 7999999999995 99999999999999999975 9999999999988 499999999999999988773
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-08 Score=93.53 Aligned_cols=144 Identities=19% Similarity=0.129 Sum_probs=111.7
Q ss_pred HHhhCCCCHHH--HHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----HH---HHH-HHHH
Q 006937 292 ALYYNWHYADA--MYNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN----LD---KAV-ECYQ 358 (625)
Q Consensus 292 ~l~~~~~~~~~--~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----~~---~A~-~~~~ 358 (625)
+....|.+..+ ++..|..+...++ ..+|+.+|+++++++|+++.++..++.++..... .. .++ ..++
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 33445665544 3445565655544 5899999999999999999999988887753211 11 111 1222
Q ss_pred --HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 359 --MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 359 --~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
.++...|.++.++..++.++...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..+
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 233567999999999999999999999999999999999975 77889999999999999999999999999999875
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.83 E-value=7.9e-08 Score=91.17 Aligned_cols=146 Identities=15% Similarity=0.048 Sum_probs=105.4
Q ss_pred HHHHHcCCCCHHHH--HhHHHHHHHhcC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-------HHHHH-HH
Q 006937 72 EIVLEKDSGNVEAH--IGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-------LVEAA-ES 138 (625)
Q Consensus 72 ~~~l~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------~~~A~-~~ 138 (625)
+++....|.+..+| +..|..+...++ ..+|+.+|+++++++|+++.++..++.++..... ...++ ..
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 34455567766554 455666665544 4789999999999999998888888777753211 11111 12
Q ss_pred HHH--HHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 139 YHK--ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (625)
Q Consensus 139 ~~~--al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 216 (625)
++. ++...|.++.. +..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++
T Consensus 264 ~~a~~a~~~~~~~a~~-------~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 264 IDNIVTLPELNNLSII-------YQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp HHHHHTCGGGTTCHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccCCcCHHH-------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 222 22445666554 566666677779999999999999999974 77888999999999999999999999
Q ss_pred HHHhCCCCH
Q 006937 217 AALERPMYA 225 (625)
Q Consensus 217 al~~~~~~~ 225 (625)
++.++|...
T Consensus 336 AlrL~P~~~ 344 (372)
T 3ly7_A 336 AFNLRPGAN 344 (372)
T ss_dssp HHHHSCSHH
T ss_pred HHhcCCCcC
Confidence 999999865
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.1e-08 Score=72.91 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 364 KPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 364 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
+|++++++..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|++++|+.+|+++++.+|++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57788888888888876655 6888888888888888888888888888888888888888888888888883
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=5.8e-08 Score=79.21 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAIDA 424 (625)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 424 (625)
...+.+.|.+.++.++.+.++.+++|+++.+.+ +.++++..++..++.+ | +..+++++||..+.++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456777788888888889999999999999988 6679999999999998 7 5689999999999999999999999
Q ss_pred HHHHHhcCCCChhhhhh
Q 006937 425 YEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 425 ~~~al~~~p~~~~~~~~ 441 (625)
++++++++|++..+..-
T Consensus 94 ~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHCTTCHHHHHH
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 99999999999887654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-07 Score=71.29 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=60.1
Q ss_pred CCCCHHHHHhHHHHHHHhcC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 78 DSGNVEAHIGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (625)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 149 (625)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57888888888888876655 6888888888888888888888888888888888888888888888888873
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-07 Score=74.06 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhc---CHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN---MGRLAFDSFSEAVKLD-P-QNACAHTHCGILYKDEGRLVEAAE 137 (625)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 137 (625)
....+.+.|.+.++.+|.+.++.+.+|.++.+.+ +.++++..++.+++.+ | ++.++++.+|..+++.|+|++|+.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3566778888888888999999999999999988 7779999999999998 7 568999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHH
Q 006937 138 SYHKALSADPSYKPAAE 154 (625)
Q Consensus 138 ~~~~al~~~~~~~~~~~ 154 (625)
+++++++..|++..+..
T Consensus 93 y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcCCCCHHHHH
Confidence 99999999999988744
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.6e-07 Score=70.03 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=66.8
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------CCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKD-------SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (625)
.+++..+.+|..++..|+|..|+.+|+++++.. +....++..+|.+++++|++++|+..+++++++.|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 567889999999999999999999999998853 2456788889999999999999999999999999998887
Q ss_pred HHHHH
Q 006937 119 HTHCG 123 (625)
Q Consensus 119 ~~~la 123 (625)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 76665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.54 E-value=7.7e-07 Score=69.25 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
+.-.+.+|..++..|+|..|+.+|+++++.. +....++..+|.++.++|++++|+.+++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445556666666666666666666666542 234667777777777777777777777777777777766655
Q ss_pred hH
Q 006937 441 NR 442 (625)
Q Consensus 441 ~~ 442 (625)
|.
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 54
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.8e-07 Score=90.88 Aligned_cols=88 Identities=9% Similarity=0.018 Sum_probs=50.8
Q ss_pred HHhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCC---HHHHHH
Q 006937 310 YGEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNF---SQSLNN 373 (625)
Q Consensus 310 ~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~ 373 (625)
+..+|++++|+..+++++++ .|++ ...+.++|.+|..+|++++|+.++++++++ .|++ ...+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 33456666666666666654 2222 445566666666666666666666666654 2333 335566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 374 LGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
+|.+|..+|++++|+.++++++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 666666666666666666666654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=7.4e-07 Score=88.57 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
++.++|.+|..+|+|++|+.++++++++ +|+....+.+||.+|..+|++++|+.+|++|++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3444455555555555555555554443 122233445555555555555555555555554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.2e-07 Score=90.30 Aligned_cols=98 Identities=12% Similarity=-0.026 Sum_probs=81.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCC---HHHH
Q 006937 308 VAYGEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNF---SQSL 371 (625)
Q Consensus 308 ~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~ 371 (625)
......|+|++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|++ ...+
T Consensus 306 ~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 306 RRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3344578999999999999986 3444 567899999999999999999999999976 3444 4589
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHH
Q 006937 372 NNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTYAEAY 405 (625)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 405 (625)
.++|.+|..+|++++|+.+|++++++ .|+++.+.
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999999998 45655544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-06 Score=86.97 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=87.9
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhc-----CCC
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEK-----DSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKL-----DPQ 114 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~ 114 (625)
.+..+.....+..+|+|++|+..++++++. .|++ ...+.++|.+|..+|+|++|+.++++++.. .|+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 455666777888999999999999999975 3444 467889999999999999999999999975 344
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHH
Q 006937 115 ---NACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPA 152 (625)
Q Consensus 115 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~ 152 (625)
....++++|.+|..+|++++|+..|++++++ .|+++..
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 4557899999999999999999999999874 5666654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00014 Score=74.17 Aligned_cols=163 Identities=9% Similarity=-0.006 Sum_probs=133.4
Q ss_pred chhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 006937 273 GTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLK---------FDMAIVFYELAFHFN-PHCAEACNNLG 341 (625)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~---------~~~A~~~~~~al~~~-~~~~~~~~~la 341 (625)
-..+.+.|+.++|+++|+++.+.. +-+..+|..+-.++...+. .++|.++|++..... ..+...|..+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 355677899999999999998764 2356677777777765543 688999999988763 34688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Q 006937 342 VIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PTYAEAYNNLGVLYRDAGSIS 419 (625)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 419 (625)
..|.+.|+.++|.++|++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+.. .-+...+..+-..|.+.|+.+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHH
Confidence 99999999999999999987753 3357889999999999999999999999998763 224778999999999999999
Q ss_pred HHHHHHHHHHh--cCCCC
Q 006937 420 LAIDAYEQCLK--IDPDS 435 (625)
Q Consensus 420 ~A~~~~~~al~--~~p~~ 435 (625)
+|.+++++..+ ..|+.
T Consensus 193 ~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 193 KVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHHHHHHHHHHTSSBCH
T ss_pred HHHHHHHHHHHhCCCcCH
Confidence 99999998866 34543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00024 Score=72.46 Aligned_cols=162 Identities=10% Similarity=-0.002 Sum_probs=96.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCHHHHHhHHHHHHHhc---------CHHHHHHHHHHHHhcCC-CcHHHH
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKD-SGNVEAHIGKGICLQMQN---------MGRLAFDSFSEAVKLDP-QNACAH 119 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p-~~~~~~ 119 (625)
+...-..+.+.|++++|+++|+++.+.. +-+...+..+-.++...+ ..++|.+.|++.....- -+...+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3344566777888888888888877642 124445554444444332 35667777776655421 245566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHH
Q 006937 120 THCGILYKDEGRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYN 196 (625)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~ 196 (625)
..+...+.+.|++++|..+|+++.+. .|+ .. .|..+-..+.+.|+.++|.++|+++.+..- -+...|..
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~-------tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~ 180 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LR-------SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAA 180 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cc-------eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 66666777777777777777766553 232 11 244555555666666666666666665422 14556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 197 LGVVYSELMQYDTALGCYEKAALE 220 (625)
Q Consensus 197 la~~~~~~~~~~~A~~~~~~al~~ 220 (625)
+...+.+.|+.++|.++++++.+.
T Consensus 181 Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHh
Confidence 666666666666666666666543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.21 E-value=8e-06 Score=63.95 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA---AAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAIDA 424 (625)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 424 (625)
...+...|.+.+..++....+.+++|+++.+..+..+ ++.+++..+..+ | ..-+.++.||..+.++|+|++|+++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445556666666666667777777777777666555 777777777665 4 3456777888888888888888888
Q ss_pred HHHHHhcCCCChhhhh
Q 006937 425 YEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 425 ~~~al~~~p~~~~~~~ 440 (625)
++.+|+..|+|..+..
T Consensus 97 ~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHHhCCCCHHHHH
Confidence 8888888888776654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.08 E-value=5.4e-05 Score=59.25 Aligned_cols=95 Identities=11% Similarity=0.008 Sum_probs=81.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHH---HHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHH
Q 006937 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL---AFDSFSEAVKLD-P-QNACAHTHCGILYKDEGRLVE 134 (625)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~ 134 (625)
.......+...|.+.+..++.+.++.+.+|.++.+..+... ++..++..++.+ | ..-+.++.+|..+++.|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 33445667777888888788899999999999999887766 999999998877 5 567899999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHH
Q 006937 135 AAESYHKALSADPSYKPAAE 154 (625)
Q Consensus 135 A~~~~~~al~~~~~~~~~~~ 154 (625)
|..+++.+++..|++..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999988744
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00031 Score=56.12 Aligned_cols=116 Identities=12% Similarity=0.012 Sum_probs=82.2
Q ss_pred cCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 006937 111 LDPQNACAHTHCGILYKDEGRL------VEAAESYHKALSADPSY-KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183 (625)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~-~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~ 183 (625)
..|++++.|..........|+. ++-++.|++++..-|.. ...+...+.++...+.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4678888888888887777887 77888888888766543 23344455556666644 4457788888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006937 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227 (625)
Q Consensus 184 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 227 (625)
++.....+.+|...|..-.++|+...|.+.+.+++...|...+.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 77766667777777777777888888888888888777765443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00024 Score=56.76 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHccCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 330 NPHCAEACNNLGVIYKDRDNL------DKAVECYQMALSIKPNF--------SQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
.|.+++.|........+.|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 344444444444444444444 44444555554443321 2344455533 44567777777777777
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
..+...+.+|...|..-.++|+...|.+.+.+++.+.|...+.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 7666667777777777777777777777777777777765544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00023 Score=58.39 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006937 303 MYNLGVAYGEMLKFDMAIVFYELAFHFN---PHC------AEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (625)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (625)
++.-...+...|.|+.|+-....++... |+. ..++..+|.+++..++|..|...|+++++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3444455556666666666666655442 221 335666777777777777777777776654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00032 Score=57.47 Aligned_cols=94 Identities=10% Similarity=0.021 Sum_probs=78.3
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---------HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC------C
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN---------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLD------P 113 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p 113 (625)
-.++.....++..|.|+.|+-+...++....++ ..+++.+|.+++..++|..|...|+++++.. +
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 458889999999999999999999977653322 2478999999999999999999999987641 1
Q ss_pred -------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 114 -------------------QNACAHTHCGILYKDEGRLVEAAESYHKA 142 (625)
Q Consensus 114 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (625)
.+.+..+.++.|+...+++++|+..++.+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11368899999999999999999998765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0012 Score=52.38 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 365 PNFSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
....++.+++|+++.+..+. .+++.+++..+...|. .-+.++.||..+.++|+|.+|+++.+.+|+..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45688899999999988754 5788999999988884 5688999999999999999999999999999999987754
Q ss_pred h
Q 006937 441 N 441 (625)
Q Consensus 441 ~ 441 (625)
-
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0011 Score=51.95 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 367 FSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 367 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
.+.+.+++|+++.+..+. .+++..++..++.+|. .-+.++.||..+.++|+|++|+++.+.+++..|+|..+..-
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 567888888888877654 4688888888888874 46788889999999999999999999999999998877543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0081 Score=47.76 Aligned_cols=76 Identities=11% Similarity=0.022 Sum_probs=64.6
Q ss_pred CCCHHHHHhHHHHHHHhcCH---HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 006937 79 SGNVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (625)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 154 (625)
.-+.++.+.+|+++.+..+. .+++.+++..++..|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 35678899999999887654 5789999999988884 5678899999999999999999999999999999987643
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0019 Score=50.58 Aligned_cols=77 Identities=10% Similarity=0.003 Sum_probs=53.9
Q ss_pred CHHHHHhHHHHHHHhcCH---HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 156 (625)
.+.+.+.+|.++.+..+. .+++..++..++.+|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 456777777777766543 4577777777777763 456777777777777777777777777777777777765443
Q ss_pred H
Q 006937 157 A 157 (625)
Q Consensus 157 a 157 (625)
.
T Consensus 119 ~ 119 (134)
T 3o48_A 119 S 119 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.19 Score=51.99 Aligned_cols=334 Identities=9% Similarity=-0.041 Sum_probs=150.9
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH--
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL-- 125 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-- 125 (625)
.+..+..|...+..|++..+..+...+ ...|- ..+..........+.. .-..+...+...|+.+..-......
T Consensus 6 ~~~~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL--~~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~l~ 80 (618)
T 1qsa_A 6 QRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPL--YPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVN 80 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTT--HHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCc--HHHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 456677888888888887776664432 23333 2222222222222211 1124445556677776554333322
Q ss_pred -HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 126 -YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (625)
Q Consensus 126 -~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (625)
+.+.+++..-+..+.. .|.+... -+.........|+..+|.....++.......+.....+-..+...
T Consensus 81 ~l~~~~~w~~~l~~~~~----~p~~~~~-------~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 81 ELARREDWRGLLAFSPE----KPGTTEA-------QCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHTTCHHHHHHHCCS----CCSSHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHhccC----CCCCHHH-------HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHC
Confidence 2335565555543332 2444443 223334455566666666655555544433333333333333333
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
|.. ....+..........|+...|......+ .++. ..++..+..+- .+...
T Consensus 150 g~l----------------t~~~~~~R~~~al~~~~~~~a~~l~~~l---~~~~----~~~a~~~~al~------~~p~~ 200 (618)
T 1qsa_A 150 GKQ----------------DPLAYLERIRLAMKAGNTGLVTVLAGQM---PADY----QTIASAIISLA------NNPNT 200 (618)
T ss_dssp TCS----------------CHHHHHHHHHHHHHTTCHHHHHHHHHTC---CGGG----HHHHHHHHHHH------HCGGG
T ss_pred CCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHhC---CHHH----HHHHHHHHHHH------hChHh
Confidence 322 2333333444555555555554433221 1111 01111111110 01111
Q ss_pred HHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 285 GVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
...... ...+... .....++.......+.+.|...+........-+.. .+..++.-+...+...++...+.+
T Consensus 201 ~~~~~~---~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~ 277 (618)
T 1qsa_A 201 VLTFAR---TTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDD 277 (618)
T ss_dssp HHHHHH---HSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHH
T ss_pred HHHHHh---ccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHh
Confidence 111000 0011111 11222333333444666777666665443222222 122222223333335566666666
Q ss_pred HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 360 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
...... +......++...+..|+++.|..++++.-..........+.+|..+..+|+.++|..+|+++.+
T Consensus 278 ~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 278 AIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 544333 2223333333444567777777777655443334466677777777777777777777777764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.14 Score=54.07 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (625)
..=|..+|.+..+++.+++|+++|+.++.. .-++.++..|-.+|...+
T Consensus 613 ~lEWEiLGlla~RL~h~~EA~~a~~~~l~~-RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 613 GLEWELLGLIMLRTWHWEDAVACLRTSIVA-RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcC
Confidence 444555566555566666666666655543 233555555555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.087 Score=57.50 Aligned_cols=100 Identities=14% Similarity=0.038 Sum_probs=64.9
Q ss_pred HHHHHcCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 124 ILYKDEGRLVEAAE-SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (625)
Q Consensus 124 ~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 202 (625)
......+++++|.+ .+. .-++ ... +..+...+...|..++|++..+ ++... .....
T Consensus 607 ~~~~~~~~~~~a~~~~l~----~i~~-~~~-------~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l 663 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLP----NVEG-KDS-------LTKIARFLEGQEYYEEALNISP--------DQDQK---FELAL 663 (814)
T ss_dssp HHHHHTTCHHHHHHHTGG----GCCC-HHH-------HHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHH
T ss_pred hHHHHhCCHHHHHHHHHh----cCCc-hHH-------HHHHHHHHHhCCChHHheecCC--------Ccchh---eehhh
Confidence 34456778888765 331 1110 011 2334455566788888776552 22222 33456
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (625)
Q Consensus 203 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (625)
..|++++|.+..+. .++...|..+|..+.+.++++.|+.+|.++
T Consensus 664 ~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 78999999887543 356789999999999999999999998875
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.078 Score=52.79 Aligned_cols=205 Identities=13% Similarity=-0.053 Sum_probs=126.2
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEK------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (625)
..+..+..+..+. .|++++|++.+..+.+. .+....+...+...+...|+++...+.+.-..+.......+-.
T Consensus 16 ~~~~~~~~~~~l~-~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~ 94 (445)
T 4b4t_P 16 ILKEEFPKIDSLA-QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ 94 (445)
T ss_dssp ------------C-HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3444555565553 47899999887655443 2334567888888999999999988877665554443333322
Q ss_pred HHHHHH---H-HcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--C-
Q 006937 121 HCGILY---K-DEGRLVEAAESYHKALSA----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--H- 189 (625)
Q Consensus 121 ~la~~~---~-~~g~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~- 189 (625)
.+.... . .....+. ......+.. ..+-.......+.+...++.++...|++.+|...+.......- .
T Consensus 95 ~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~ 172 (445)
T 4b4t_P 95 YMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME 172 (445)
T ss_dssp HHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc
Confidence 222211 1 1222221 111122221 1111111123466678899999999999999999988764311 1
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 190 ---YAPAYYNLGVVYSELMQYDTALGCYEKAAL---ERPMY----AEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (625)
Q Consensus 190 ---~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (625)
-.+.+....+++...+++.+|...++++.. ..+.. ...+...|.++...++|.+|..+|..++..
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 256788889999999999999999998742 22332 345677899999999999999999998764
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.12 Score=49.88 Aligned_cols=101 Identities=16% Similarity=0.075 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 006937 194 YYNLGVVYSELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (625)
Q Consensus 194 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (625)
-..+|.+|+..|+|.+|.+.+.+..+.-.. ..+++..-..+|...+++.++...+.++......-.......+.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 347899999999999999999998774221 25667778889999999999999999886553110011223455
Q ss_pred HHHHhchhhh-hcCCHHHHHHHHHHHHh
Q 006937 268 ALTDLGTKVK-LEGDINQGVAYYKKALY 294 (625)
Q Consensus 268 ~~~~l~~~~~-~~~~~~~A~~~~~~~l~ 294 (625)
+...-|..+. ..++|.+|...|-++++
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 5555666666 67777777777776654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.14 Score=55.86 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=27.0
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (625)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 217 (625)
..|++++|.+..+ ..++...|..+|..+.+.++++.|+++|.++
T Consensus 664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3466666665542 2344566666777777777777777666654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.088 Score=50.89 Aligned_cols=94 Identities=14% Similarity=-0.003 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---CCC----HHH
Q 006937 304 YNLGVAYGEMLKFDMAIVFYELAFHFNP--H----CAEACNNLGVIYKDRDNLDKAVECYQMALSIK---PNF----SQS 370 (625)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~al~~~~--~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~----~~~ 370 (625)
..+|.+|...|+|.+|.+.+.+..+.-. + ..+++..-..+|...+++.++...+.++.... +.+ +..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 4789999999999999988888876421 1 15667777888889999999999998886552 122 235
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 006937 371 LNNLGVVYT-VQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 371 ~~~la~~~~-~~g~~~~A~~~~~~al~~ 397 (625)
...-|.++. ..++|.+|..+|-++++.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 566677788 789999999988888754
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.67 E-value=0.95 Score=48.75 Aligned_cols=189 Identities=11% Similarity=0.057 Sum_probs=100.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CcH-HHHhhHHHHHHH
Q 006937 201 YSELMQYDTALGCYEKAALER-PMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSP---NFE-IAKNNMAIALTD 271 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~-~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~-~~~~~~~~~~~~ 271 (625)
....|+.++++..+.+.+... .++ ..+.+.+|.++...+ .+++..+...+.... ... ......+ +...
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~g-AaLG 460 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHG-ASLG 460 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHH-HHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHH-HHHH
Confidence 345577778888877766522 122 345666666666555 468888888775433 110 1112222 3446
Q ss_pred hchhhhhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 272 LGTKVKLEGDINQGVAYYKKALYYNWHYA--DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (625)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 349 (625)
+|.++.-.++ +++.+.+...+..+.... .+-+.+|.++.-.|+-+....++..+.+...+...-...+|..+...|+
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 6666665554 456666666665332211 3455677777788887766666666655333322222334444445666
Q ss_pred HHHHHHHHHHHHccCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 350 LDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
.+.+....+..... .++. +...+|..|...|+...-...+..+.
T Consensus 540 ~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 540 QELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp GGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 66555555544432 2222 23345555566666543333444433
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.28 Score=39.93 Aligned_cols=192 Identities=18% Similarity=0.146 Sum_probs=126.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 006937 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRL 132 (625)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 132 (625)
......++-.+|+.++-+-.-. .|..++....++..++-.|.|..++-.+.+ -+...+.+..+.||....++
T Consensus 7 ~kI~Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdY 78 (242)
T 3kae_A 7 GKICKSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDY 78 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHH
Confidence 3444556777888877554333 345557788889999999999999877653 35677788889999999999
Q ss_pred HHHHHHHHHHHhc-----------------CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 006937 133 VEAAESYHKALSA-----------------DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (625)
Q Consensus 133 ~~A~~~~~~al~~-----------------~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (625)
..|+..+++.++- +|.+.+. .+..+|..+.+.|+.++|+.++.......|-.+.+-.
T Consensus 79 kkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEf------Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn 152 (242)
T 3kae_A 79 KKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEF------FESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN 152 (242)
T ss_dssp HHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHhcccccCcccccccceeeeccchHHH------HHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence 9999999999832 2233332 2667889999999999999999998888765433321
Q ss_pred HHHH-----------HH------HHcCCHHHHH--------HHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 006937 196 NLGV-----------VY------SELMQYDTAL--------GCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYE 249 (625)
Q Consensus 196 ~la~-----------~~------~~~~~~~~A~--------~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~ 249 (625)
.+-. +. .+...+.... ...++-...-|.... .....+.-+..+|-.++...+|.
T Consensus 153 liyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~ 232 (242)
T 3kae_A 153 LLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFE 232 (242)
T ss_dssp HHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHH
Confidence 1100 00 0000011111 122222333454332 33456778899999999999999
Q ss_pred HHHhcCCCc
Q 006937 250 RCLAVSPNF 258 (625)
Q Consensus 250 ~al~~~~~~ 258 (625)
..-..+|..
T Consensus 233 ~lR~kDP~F 241 (242)
T 3kae_A 233 LVRRKDPMF 241 (242)
T ss_dssp HHHHHSTTT
T ss_pred HHHhcCCCc
Confidence 998888863
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.031 Score=58.84 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (625)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (625)
+..-+..+...|+++-|+++.++++...|..-..|+.|+.+|..+|+++.|+-.+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 33344445555566666666666666666666666666666666666666554433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.23 Score=41.46 Aligned_cols=102 Identities=16% Similarity=0.062 Sum_probs=69.0
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389 (625)
Q Consensus 310 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 389 (625)
....|+++.|.+..+.. ++...|..+|......|+++-|..+|+++-. +..+..+|...|+.+.-.+
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 35778888888887665 5678888899999999999999888888643 2344555666777666555
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (625)
Q Consensus 390 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (625)
..+.+..... +.....++..+|+++++++.|.+.-
T Consensus 82 la~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5554443322 1223345667888888888876543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=1.8 Score=44.82 Aligned_cols=339 Identities=10% Similarity=-0.095 Sum_probs=161.5
Q ss_pred HHHHHHHcCCCCHHHHHhHHHHH---HHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 70 LYEIVLEKDSGNVEAHIGKGICL---QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (625)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 146 (625)
.+...+..+|+.+..-....... .+.+++..-+.++.. .|.+..............|+..+|....+++....
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 44455667888876655444433 345666665554443 47788888888888899999888888888776655
Q ss_pred CCCHHHHHHHHHHHH-----------HhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 147 PSYKPAAECLAIVLT-----------DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215 (625)
Q Consensus 147 ~~~~~~~~~~a~~~~-----------~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 215 (625)
...+.....+...+. ......+..|+...|......+ .+........+..++. +.........
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l---~~~~~~~a~~~~al~~---~p~~~~~~~~ 206 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM---PADYQTIASAIISLAN---NPNTVLTFAR 206 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC---CGGGHHHHHHHHHHHH---CGGGHHHHHH
T ss_pred CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC---CHHHHHHHHHHHHHHh---ChHhHHHHHh
Confidence 444433222211111 1112233334443333322211 0110000000000000 0000000000
Q ss_pred HHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHh
Q 006937 216 KAALERPMYA-EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (625)
Q Consensus 216 ~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 294 (625)
...+... .....++.......+.+.|...+........-+..... .....++......+...++...+.+...
T Consensus 207 ---~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~---~~~~~ia~~~~~~~~~~~~~~~~~~~~~ 280 (618)
T 1qsa_A 207 ---TTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQ---ELRDIVAWRLMGNDVTDEQAKWRDDAIM 280 (618)
T ss_dssp ---HSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHH---HHHHHHHHTSCSTTCCHHHHHHHHHHHH
T ss_pred ---ccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHH---HHHHHHHHHHHHcCCChHHHHHHHhccc
Confidence 0011110 11122233333334666666666655433222222111 1112222222233324455555555443
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC----------
Q 006937 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK---------- 364 (625)
Q Consensus 295 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------- 364 (625)
...+ ......++...+..|+++.|...+..+-..........+-+|..+...|+.++|..+|+++....
T Consensus 281 ~~~~-~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~ 359 (618)
T 1qsa_A 281 RSQS-TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQR 359 (618)
T ss_dssp TCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred cCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 3322 22223333334455677776666665544333445566666666666677777766666655420
Q ss_pred -------------CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 365 -------------PNF-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (625)
Q Consensus 365 -------------~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (625)
+.. .......+..+...|....|...+...+... +..-...++.+....|.+..++....
T Consensus 360 Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 360 IGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp TTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 000 0122345566777888888877777766532 23444566777777888877775554
Q ss_pred H
Q 006937 427 Q 427 (625)
Q Consensus 427 ~ 427 (625)
+
T Consensus 438 ~ 438 (618)
T 1qsa_A 438 A 438 (618)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.48 Score=47.12 Aligned_cols=191 Identities=13% Similarity=0.001 Sum_probs=113.1
Q ss_pred hcCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH
Q 006937 95 QNMGRLAFDSFSEAVKL------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (625)
Q Consensus 95 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~ 168 (625)
.|++++|++.+...-+. .+....+...+..++...|+++...+.+.-..+.......+...+.. ..-....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~---~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQ---KVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHH---HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHh
Confidence 36788888877544432 23356778888899999999999888776665554444443222111 1111111
Q ss_pred HhCChHHHHHHHHHHHhh----CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 006937 169 LAGNTQDGIQKYYEALKI----DPH-------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM------YAEAYCNM 231 (625)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~----~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l 231 (625)
.....+.. .....+.. ..+ .......|+.++...|++.+|...+.......-. -.+.+...
T Consensus 106 ~~~~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 106 SSKSLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HHCTTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred cCCchhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22222211 11122221 111 2455678999999999999999999987643111 25678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHH
Q 006937 232 GVIYKNRGDLESAIACYERCLAV---SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (625)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 293 (625)
..++...+++..|...++++... .+..+ ...+..+...|.++...++|.+|-.+|..+.
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~---~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYE---SLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999887421 12222 1223344444555555555555555554443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.28 Score=40.98 Aligned_cols=100 Identities=11% Similarity=0.001 Sum_probs=61.6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (625)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (625)
.++.|+++.|.++.+.+ ++...|..+|......|+++-|..+|.++-. +..+..+|...|+.+.-..
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 36778888888887765 5677888888888888888888888876521 2344455666676655444
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 006937 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (625)
Q Consensus 138 ~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~ 182 (625)
.-+.+.... + +.....++...|+++++++.|.+
T Consensus 82 la~iA~~~g-~-----------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE-D-----------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT-C-----------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc-c-----------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444333221 1 12222334455677766666544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.14 Score=45.89 Aligned_cols=62 Identities=15% Similarity=0.035 Sum_probs=57.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH
Q 006937 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (625)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (625)
...+++.|+.++|++.....++.+|.|+.....+...+.-.|+++.|.+.++.+.+++|...
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 45678999999999999999999999999999999999999999999999999999988653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.22 Score=44.60 Aligned_cols=119 Identities=16% Similarity=0.067 Sum_probs=77.9
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh
Q 006937 91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170 (625)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~ 170 (625)
.+++.|+.++|+......++.+|.+......+..+++-.|+++.|.+.++.+.+++|+..... ..|..+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a----~~yr~lI------ 75 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA----SQLRHLV------ 75 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH----HHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH----HHHHHHH------
Confidence 456788899999999999999999999999999999999999999999999999988854431 1121111
Q ss_pred CChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 171 GNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (625)
Q Consensus 171 ~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 223 (625)
.|...=.+.+.- .|........-+......|+.++|...-.++++..|.
T Consensus 76 ----~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 76 ----KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp ----HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred ----HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 111111111111 1111222333455556677888888877777776554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.17 Score=49.38 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=75.6
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH----------------------HHHHhHHHHHHHhcCHHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNV----------------------EAHIGKGICLQMQNMGRLAFDSFS 106 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------------~~~~~la~~~~~~g~~~~A~~~~~ 106 (625)
+.+...|......|+.+.|...+++++....... .+...++..+...|++.+|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4455566667778999999999999998743210 123345667778899999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (625)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (625)
+++..+|-+..++..+..++...|+..+|+..|+++-+
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999888999999999999999999998887644
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.31 Score=47.52 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=74.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHccCCCCHHHHHHHHHHHHHcCCHH
Q 006937 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA-VECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385 (625)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 385 (625)
|......|+.+.|...+.+++.+.....-. ... ...+-.+ ...+++. ...+...++..+...|++.
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHH
Confidence 334445678888888888888774322100 000 0111111 1111111 1224556778888999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
+|+..+.+++..+|-+..++..+-.++...|+..+|++.|+++.+
T Consensus 189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.19 Score=50.38 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (625)
..+..+|.+......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++..++.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999887788899998887764
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.058 Score=53.52 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=58.7
Q ss_pred HHhcCCHHHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHc-----c
Q 006937 310 YGEMLKFDMAIVFYELAFH-----------FNPHCAEACNNLGVIYKDRDNLDKAV----------ECYQMALS-----I 363 (625)
Q Consensus 310 ~~~~~~~~~A~~~~~~al~-----------~~~~~~~~~~~la~~~~~~~~~~~A~----------~~~~~al~-----~ 363 (625)
+...+++++|.++-...+. +++-.+.+|+..+.++...|+..... ..+-.++. .
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 3445566666555544431 12334566777777776666654421 12222221 1
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 364 KPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 364 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
++. ...++..+-+.|...+.+++|..+..++. .|.. ...++.+|.++..+++|.+|.+++..|+...|.+
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 222 24477778888999999999999998884 4432 4566788999999999999999999999998876
Q ss_pred hhh
Q 006937 436 RNA 438 (625)
Q Consensus 436 ~~~ 438 (625)
..+
T Consensus 304 ~~a 306 (523)
T 4b4t_S 304 SKS 306 (523)
T ss_dssp SSC
T ss_pred hhh
Confidence 544
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.084 Score=52.42 Aligned_cols=131 Identities=11% Similarity=0.019 Sum_probs=38.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHH-----------cCCCCHHHHHhHHHHHHHhcCHHHHH----------HHHHHHHhc---
Q 006937 56 NILRSRNKFVDALALYEIVLE-----------KDSGNVEAHIGKGICLQMQNMGRLAF----------DSFSEAVKL--- 111 (625)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~--- 111 (625)
..++..++|++|.++-..++. .++-.+.+|+..+.++...|+..... ..+..+++.
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 345667778887777665541 13334456666666666666554422 122222221
Q ss_pred --CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC
Q 006937 112 --DPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (625)
Q Consensus 112 --~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 188 (625)
++. ....+..+-+.|...+.+++|..+..++. .|.........+..++.+|.++..+++|.+|.+++..++...|
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 121 23345555666666677777777666663 3432111122233344445555555555555555544444433
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.34 E-value=1.8 Score=35.37 Aligned_cols=118 Identities=19% Similarity=0.147 Sum_probs=84.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 207 (625)
+-.+++.++-.-.-.....|+. -..++..++-.|.+..++-++. .-+...+.+..+.||...++|
T Consensus 14 kY~dYdt~~fLsa~L~~~~~eY----------~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdY 78 (242)
T 3kae_A 14 RYRDYETAIFLAACLLPCKPEY----------RMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDY 78 (242)
T ss_dssp HTTCHHHHHHHHHHHC----CT----------HHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCH
T ss_pred hcccccHHHHHHHHHccCChHH----------HhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHH
Confidence 4456666654433333333332 2335666677899998887763 345677888889999999999
Q ss_pred HHHHHHHHHHHHh-----------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 006937 208 DTALGCYEKAALE-----------------RPMYAE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (625)
Q Consensus 208 ~~A~~~~~~al~~-----------------~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 260 (625)
..|+..+++.++- +|.+.+ .+..+|.++...|+.++|+.++.......+-.+.
T Consensus 79 kkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 79 KKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 9999999999832 233333 4667899999999999999999999988886554
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.28 Score=49.16 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=77.4
Q ss_pred HHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 006937 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340 (625)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 340 (625)
.......++..+|++......+..|..+|.+|....|+....+..+|.+....|+.-+|+-+|-+++......+.+..++
T Consensus 147 ~~~~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL 226 (497)
T 1ya0_A 147 CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHH
Confidence 33445668889999999999999999999999999999999999999999999999999999999998887789999999
Q ss_pred HHHHHH
Q 006937 341 GVIYKD 346 (625)
Q Consensus 341 a~~~~~ 346 (625)
...+.+
T Consensus 227 ~~~f~~ 232 (497)
T 1ya0_A 227 QKALSK 232 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.02 E-value=8.5 Score=43.50 Aligned_cols=146 Identities=12% Similarity=-0.032 Sum_probs=85.4
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 006937 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (625)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 163 (625)
....+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-..........
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~---------- 879 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC----------
T ss_pred hHHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh----------
Confidence 34455666777788776654 3455677777889999999999999999999998743211110000
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHc
Q 006937 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-YA----EAYCNMGVIYKNR 238 (625)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~----~~~~~la~~~~~~ 238 (625)
..... ..............+..|..+..++.+.+.++.+++..+.|++..+. +. ..|..+-..+...
T Consensus 880 -------~~~~~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 880 -------AVLRE-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 951 (1139)
T ss_dssp -------SSHHH-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred -------hhhcc-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh
Confidence 00000 00000001111223445566666777777777777777777765432 22 2455566666777
Q ss_pred CCHHHHHHHHHHH
Q 006937 239 GDLESAIACYERC 251 (625)
Q Consensus 239 g~~~~A~~~~~~a 251 (625)
|+|++|...+...
T Consensus 952 ~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 952 GKFDAAHVALMVL 964 (1139)
T ss_dssp CCSGGGGHHHHHH
T ss_pred CCHHHHHHHHHhC
Confidence 7777776666544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.74 Score=49.87 Aligned_cols=97 Identities=6% Similarity=-0.099 Sum_probs=66.4
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYY----NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLG 341 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la 341 (625)
..|..+-..+.+.|+.++|..+|.+..+. ..-+..+|..+...+.+.|+.++|.++|++..+.. ..+...|+.+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35566666777778888888877664322 23356677777777788888888888887776652 33566777777
Q ss_pred HHHHHcCCH-HHHHHHHHHHHcc
Q 006937 342 VIYKDRDNL-DKAVECYQMALSI 363 (625)
Q Consensus 342 ~~~~~~~~~-~~A~~~~~~al~~ 363 (625)
..+.+.|+. ++|.++|++..+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc
Confidence 777777764 6677777777665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.87 Score=49.32 Aligned_cols=99 Identities=7% Similarity=-0.067 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHH
Q 006937 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNL 374 (625)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 374 (625)
...+..+-..|.+.|+.++|..+|.+..+. ...+...|+.+...|.+.|+.++|.+.|++..+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 347888999999999999999999776532 34568899999999999999999999999987653 3357788888
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHhC
Q 006937 375 GVVYTVQGK-MDAAAEMIEKAIAAN 398 (625)
Q Consensus 375 a~~~~~~g~-~~~A~~~~~~al~~~ 398 (625)
-.++.+.|+ .++|.++|++..+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 889999998 578899999998763
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.34 Score=47.96 Aligned_cols=62 Identities=11% Similarity=-0.096 Sum_probs=34.3
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDP---QNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (625)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (625)
.++..+|..+...|++++|.+.|.++..... ...+.+.....++...+++..+...+.++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3555566666666666666666665554322 2234555555555566666666666655543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.97 E-value=12 Score=40.50 Aligned_cols=157 Identities=10% Similarity=0.029 Sum_probs=83.6
Q ss_pred HHHhcCHHHHHHHHHHHHhcC-CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCH-HHHHHHHHHHHH
Q 006937 92 LQMQNMGRLAFDSFSEAVKLD-PQN----ACAHTHCGILYKDEGRLVEAAESYHKALSADP---SYK-PAAECLAIVLTD 162 (625)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~-~~~~~~a~~~~~ 162 (625)
....|+.++++..+.+.+... .++ ..+++.+|.++...+ .+++..+...+.... ... ......+ +...
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~g-AaLG 460 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHG-ASLG 460 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHH-HHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHH-HHHH
Confidence 345677778888777766422 122 335566666665554 467777777765432 111 1111222 3346
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006937 163 LGTSLKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (625)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 240 (625)
+|.++.-.++ +++.+.+...+..+... ..+-+.+|.++.-.|+-+-...++..+.+...+...-...+|..+...|+
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 6666654444 45666666666543321 13445667777777776666666555554333322222334444455677
Q ss_pred HHHHHHHHHHHH
Q 006937 241 LESAIACYERCL 252 (625)
Q Consensus 241 ~~~A~~~~~~al 252 (625)
.+.+....+...
T Consensus 540 ~e~~~~li~~L~ 551 (963)
T 4ady_A 540 QELADDLITKML 551 (963)
T ss_dssp GGGGHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 665555555443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.72 E-value=2.9 Score=47.23 Aligned_cols=149 Identities=10% Similarity=-0.010 Sum_probs=96.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC--------------------
Q 006937 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-------------------- 112 (625)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------- 112 (625)
.+...+...+.++-+.++ +...|.++...+.+|.++...|++++|..+|+++-.--
T Consensus 817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 455567777777766553 44567788888999999999999999999998874211
Q ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 006937 113 ---PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (625)
Q Consensus 113 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (625)
...+..|..+..++.+.+.++.+++..+.+++..+.+... ....++..+-..+...|+|++|...+...-. ...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~--~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED--LSIAITHETLKTACAAGKFDAAHVALMVLST-TPL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH--HHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh--hHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHH
Confidence 0112455666777778888888888888888765433221 1123455666667777888888777654322 122
Q ss_pred CHHHHHHHHHHHHHcCCHH
Q 006937 190 YAPAYYNLGVVYSELMQYD 208 (625)
Q Consensus 190 ~~~~~~~la~~~~~~~~~~ 208 (625)
....+..+-....+.|+.+
T Consensus 970 r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCChh
Confidence 3445555555555555433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.53 Score=46.60 Aligned_cols=105 Identities=13% Similarity=-0.005 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 006937 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERP---MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (625)
Q Consensus 190 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (625)
...++..+|..|...|++++|.+.|.++..... ...+.+.....++...+++..+...+.++......... +....
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-~~~~~ 208 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-WERRN 208 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC-THHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC-HHHHH
Confidence 345778889999999999999999998876532 34677888888888899999999988887654322110 11222
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
......|..+...++|.+|...|-.++..
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 33333444455566666666666555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.91 E-value=5.6e-06 Score=79.77 Aligned_cols=266 Identities=15% Similarity=0.107 Sum_probs=189.5
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
..++.|..+|...+..++..+|++.|-++ .+|.+ +.....+..+.|++++=+.++.-+-+. -..+.+-..+..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~---y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSS---YMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCS---SSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHH---HHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 45677888999999999999999887654 34444 444555566788898888888766544 4455566677778
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 205 (625)
|.+.++..+-.+.+ ..|+... ....|.-++..|.|+.|.-+|..+ .-|..|+.++..+|
T Consensus 126 yAk~~rL~elEefl-----~~~N~A~--------iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~ 184 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-----NGPNNAH--------IQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLG 184 (624)
T ss_dssp HHTSCSSSTTTSTT-----SCCSSSC--------THHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCS
T ss_pred HHhhCcHHHHHHHH-----cCCCccc--------HHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHH
Confidence 88888765433322 1344433 455788888889998887776442 12445788899999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHH
Q 006937 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (625)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (625)
+|..|.+..+++ +++.+|.....++...+++.-|..+--..+-.... +..+-..|...|.+++-
T Consensus 185 ~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----------L~elv~~YE~~G~f~EL 248 (624)
T 3lvg_A 185 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----------LEELINYYQDRGYFEEL 248 (624)
T ss_dssp GGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----------CSGGGSSSSTTCCCTTS
T ss_pred HHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----------HHHHHHHHHhCCCHHHH
Confidence 999998887664 56778999999999999999888776666533222 23455677788999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 006937 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPH------CAEACNNLGVIYKDRDNLDKAVE 355 (625)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~------~~~~~~~la~~~~~~~~~~~A~~ 355 (625)
+.+++.++.+..-+......||.+|.+- +.++-.++++.-... -|. ....|..+..+|..-.+++.|..
T Consensus 249 IsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 249 ITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 9999999998888999999999988765 455555554432211 122 24567788888888888887763
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.58 E-value=25 Score=32.51 Aligned_cols=81 Identities=11% Similarity=-0.100 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHccCCCCHHHHHHH
Q 006937 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNLDKAVECYQMALSIKPNFSQSLNNL 374 (625)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~l 374 (625)
.+++.+..+|..+...+++.+|..+|-..- .++++.+..+-.-+... |...+ .+.+...
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~---~~s~~~~a~~l~~w~~~~~~~~~~e---------------~dlf~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT---HDSMIKYVDLLWDWLCQVDDIEDST---------------VAEFFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHTTCCCHHH---------------HHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CccHHHHHHHHHHHHHhcCCCCcch---------------HHHHHHH
Confidence 478889999999999999988888774211 01222222222211111 22222 3333333
Q ss_pred HH-HHHHcCCHHHHHHHHHHHHH
Q 006937 375 GV-VYTVQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 375 a~-~~~~~g~~~~A~~~~~~al~ 396 (625)
+. .|...|+...|...++...+
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 33 46788999998888776653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.87 E-value=31 Score=32.21 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=32.0
Q ss_pred chHhHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKF---VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (625)
..+..+.+-+.....|+| =+|-+.++.+.. -|.+.++|++|++++...
T Consensus 11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~--------------Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAA--------------RYSKQGNWAAAVDILASV 61 (336)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHH--------------HHHhhcCHHHHHHHHHHH
Confidence 455566677777888888 677766665432 356677888877765543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.41 E-value=36 Score=31.43 Aligned_cols=139 Identities=6% Similarity=-0.136 Sum_probs=70.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc--CCCcH----HHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNA----CAHT 120 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~----~~~~ 120 (625)
..+..+.+-+.....|+|=+|-+.++.+.. -|.+++++++|++++...... .-... +.-.
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~--------------Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIAN--------------RYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHH--------------HHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHH
Confidence 456677777888888999999888877643 356667777777765543221 00100 1111
Q ss_pred HHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 121 HCGILYKDEGR--LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (625)
Q Consensus 121 ~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (625)
.+..+|.+.+. -++.+.-+.+.++..|....... .-..+|+.+-.+.-...-.++..+..+|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~----------------~fi~~ai~WS~~~g~~~~Gdp~LH~~~a 141 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLK----------------DVITGMNNWSIKFSEYKFGDPYLHNTIG 141 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHH----------------HHHHHHHHHHHHTSSCTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHH----------------HHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 11222222221 12233333333333222111100 0012223222221111234788888888
Q ss_pred HHHHHcCCHHHHHHHHH
Q 006937 199 VVYSELMQYDTALGCYE 215 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~ 215 (625)
..|.+.+++.+|..+|-
T Consensus 142 ~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 142 SKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHH
Confidence 88888888888887775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 625 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-51 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-35 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-33 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-27 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-39 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-36 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 5e-35 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-29 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-27 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 1e-24 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 3e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 3e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 4e-25 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 2e-16 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 1e-10 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 5e-10 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 2e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 9e-25 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 4e-23 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 7e-18 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 8e-16 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-09 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-24 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 5e-23 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-11 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-10 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 6e-08 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-19 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 7e-18 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 4e-14 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 4e-13 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-05 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-17 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 4e-14 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 4e-09 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 3e-16 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 8e-08 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 3e-07 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-15 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-15 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-15 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-14 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 7e-14 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-10 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-14 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-13 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-13 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 9e-12 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-13 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-10 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-10 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 7e-10 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-09 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 9e-08 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-06 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-06 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-12 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 7e-10 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-09 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 8e-09 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 5e-12 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 9e-11 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 5e-10 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 4e-09 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-08 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.002 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 6e-10 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 3e-06 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 6e-05 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 1e-09 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 4e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 6e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 2e-07 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 7e-05 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 8e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 1e-09 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-09 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 3e-08 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 7e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-05 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 0.002 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 7e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 1e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-09 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-08 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 1e-06 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 3e-06 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 3e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 7e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-09 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-08 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 6e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-06 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-06 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-05 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-04 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 2e-07 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 0.001 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 1e-06 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 3e-04 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 0.001 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 4e-06 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 1e-05 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 0.004 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.001 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.002 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.003 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 0.001 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 0.004 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 180 bits (456), Expect = 2e-51
Identities = 98/392 (25%), Positives = 166/392 (42%), Gaps = 34/392 (8%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
+ A+ F A + ++ N + + + A+K
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
+P A A+++ G +YK+ G+L EA E Y AL P + LA L G
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 172 NTQDG---------------------------IQKYYEALKIDPHYAPAYYNLGVVYSEL 204
Y +A++ P++A A+ NLG V++
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
+ A+ +EKA P + +AY N+G + K + A+A Y R L++SPN + N
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324
+A + G I+ + Y++A+ H+ DA NL A E A Y
Sbjct: 243 LACVYYEQG-------LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 325 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384
A P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL V QGK+
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
Query: 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
A ++AI +PT+A+AY+N+G ++
Sbjct: 356 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 134 bits (338), Expect = 4e-35
Identities = 77/322 (23%), Positives = 135/322 (41%), Gaps = 9/322 (2%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+L AG+ + + + + +P L ++ + + D + A
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
+ P+ AEAY N+G +YK RG L+ AI Y L + P+F N+A +
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA-------ALVAA 114
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
GD+ V Y AL YN +LG + + + A Y A P+ A A +N
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
LG ++ + + A+ ++ A+++ PNF + NLG V D A +A++ +P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 459
+A + NL +Y + G I LAID Y + +++ P +A N LA +G + +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN--LANALKEKGSVAEAED 292
Query: 460 AHRDWGKRFMRLYSQYTSWDNT 481
+ + + N
Sbjct: 293 CYNTALRLCPTHADSLNNLANI 314
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 130 bits (327), Expect = 1e-33
Identities = 69/260 (26%), Positives = 117/260 (45%), Gaps = 14/260 (5%)
Query: 90 ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
L+ A + +A++ P A A ++ G ++ +G + A + KA++ DP++
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202
Query: 150 KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209
A +LG LK A + Y AL + P++A + NL VY E D
Sbjct: 203 LDA-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
A+ Y +A +P + +AYCN+ K +G + A CY L + P + NN+A
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329
+ G +I + V Y+KAL +A A NL + K A++ Y+ A
Sbjct: 316 REQG-------NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
Query: 330 NPHCAEACNNLGVIYKDRDN 349
+P A+A +N+G K+ +
Sbjct: 369 SPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (280), Expect = 2e-27
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
++ N+L+ F A+A Y L + H Q + LA D++ A++L
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
P A+ + K++G + EA + Y+ AL P++ + LA + + G
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG------- 319
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231
N ++ ++ Y +AL++ P +A A+ NL V + + AL Y++A P +A+AY NM
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
Query: 232 GVIYKNRGD 240
G K D
Sbjct: 380 GNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.4 bits (150), Expect = 6e-11
Identities = 19/196 (9%), Positives = 42/196 (21%)
Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
L G +AA + P L ++ + + +K +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 433 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGY 492
P A N + + H K + + +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 493 VSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG 552
+ Y + + L ++ A +T G + G
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 553 IDEKKVAAMVREDKID 568
+ + +D
Sbjct: 184 EIWLAIHHFEKAVTLD 199
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 148 bits (374), Expect = 4e-39
Identities = 31/237 (13%), Positives = 68/237 (28%), Gaps = 11/237 (4%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
Q +A + + V++ Y+K + YA ++
Sbjct: 6 AQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN 62
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
+ ++ I + N ++ + G Q + +
Sbjct: 63 HA--FKNQITTLQGQAKNRANPNRSEVQANL----SLFLEAASGFYTQLLQELCTVFNVD 116
Query: 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356
LG+ + + + + C +LG I + R+ +A
Sbjct: 117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRNQTSQAESY 174
Query: 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
Y+ A + P+ Q N L ++ + +G ++IA + A NL
Sbjct: 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 140 bits (353), Expect = 3e-36
Identities = 37/271 (13%), Positives = 84/271 (30%), Gaps = 20/271 (7%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI-- 267
+ +A + + ++ ++ +R L+ Y++ L + + K
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61
Query: 268 --ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A + T ++ + + + A + +
Sbjct: 62 NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGF----------YTQLLQELCT 111
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
F+ + C + LG+I + + V+ + L +LG + + +
Sbjct: 112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSS--CSYICQHCLVHLGDIARYRNQTS 169
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A A P+ + YN L +L G I Y + + + A N A
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229
Query: 446 MNYINEGHDD-KLFEAHRDWGKRFMRLYSQY 475
++ E D+ K D+ K F++ +
Sbjct: 230 LSKALESRDEVKTKWGVSDFIKAFIKFHGHV 260
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 136 bits (343), Expect = 5e-35
Identities = 42/324 (12%), Positives = 93/324 (28%), Gaps = 31/324 (9%)
Query: 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 192
+++A+ +A + A V T L Y + L D YA
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQ---ALQ-------DLYQKMLVTDLEYAL 52
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAA--LERPMYAEAYCNM-GVIYKNRGDLESAIACYE 249
+++ + + + A P +E N+ + G +
Sbjct: 53 DKKVEQDLWNHA--FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELC 110
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
V + + + I + V + Y + +LG
Sbjct: 111 TVFNVDLPCRVKSSQLGIISNKQT-------HTSAIVKPQSSSCSYI--CQHCLVHLGDI 161
Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369
+ A +Y A P + N L ++ + + + Y ++++K F
Sbjct: 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221
Query: 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL-GVLYR--DAGSISLAIDAYE 426
+ NL + + + + +A+ G +Y +S + E
Sbjct: 222 ASTNLQKALSKALESRDEVKTKW----GVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277
Query: 427 QCLKIDPDSRNAGQNRLLAMNYIN 450
+ K + +L+ + IN
Sbjct: 278 EQFKELLFQKAFNSQQLVHVTVIN 301
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 120 bits (301), Expect = 2e-29
Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 11/215 (5%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A + SR D Y+ +L D Q++ AF + ++ +
Sbjct: 27 AEVWTSRQALQDL---YQKMLVTDLEYALDK------KVEQDLWNHAFKNQITTLQGQAK 77
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
N + L A+ Y + L + + + LG +T
Sbjct: 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS 137
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
++ + + +LG + Q A Y AA P + Y + ++
Sbjct: 138 AIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
++GD + I Y R +AV F A N+ AL
Sbjct: 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 111 bits (277), Expect = 2e-27
Identities = 29/321 (9%), Positives = 72/321 (22%), Gaps = 29/321 (9%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
+A + Y+ A + + + + ++ + L +P +A
Sbjct: 13 QAEAKRLEREQKLKLYQSATQ-------AVFQKRQAGELDESVLELTSQILGANPDFATL 65
Query: 194 YYNLGVVYSEL----------MQYDTALGCYEKAALERPMYAEAYCNMG--VIYKNRGDL 241
+ V L LG E P + + + +
Sbjct: 66 WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
+ R L + + + +A+ + N+
Sbjct: 126 ARELELCARFLEADERNFHCWDYRR------FVAAQAAVAPAEELAFTDSLITRNFSNYS 179
Query: 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361
+ + ++ + L + E N D D++ Y L
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA----FFTDPNDQSAWFYHRWL 235
Query: 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421
+ TV + + +++ N L
Sbjct: 236 LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 295
Query: 422 IDAYEQCLKIDPDSRNAGQNR 442
+ + +DP +
Sbjct: 296 LQYFSTLKAVDPMRAAYLDDL 316
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 103 bits (256), Expect = 1e-24
Identities = 29/291 (9%), Positives = 72/291 (24%), Gaps = 17/291 (5%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG---TSLKLAGNTQDGIQKYY 181
+ E + L A+P + C VL L + + A + +
Sbjct: 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 97
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYD--TALGCYEKAA-LERPMYAEAYCNMGVIYKNR 238
L+++P +++ + S L + + L + + + V +
Sbjct: 98 SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA 157
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
+A + + + + + + + L L +
Sbjct: 158 VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL-------HPQPDSGPQGRLPENVLLK 210
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+ + N D + FY C + ++ + Q
Sbjct: 211 ELELVQNA----FFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQ 266
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409
++ L + A +P A ++L
Sbjct: 267 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.3 bits (111), Expect = 3e-06
Identities = 7/101 (6%), Positives = 17/101 (16%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
L + + Y L + + + + E
Sbjct: 210 KELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
+ E + + + DP
Sbjct: 270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 310
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 11/147 (7%), Positives = 37/147 (25%), Gaps = 11/147 (7%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ +L + D+ + +E + + + + +
Sbjct: 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAE 240
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+E+ + + + + + L +L +
Sbjct: 241 PLFRCELSVEKSTVLQSELESCKELQELEPENKWC-------LLTIILLMRALDPLLYEK 293
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVY 201
+ +Q + +DP A +L +
Sbjct: 294 ETLQYFSTLKAVDPMRAAYLDDLRSKF 320
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 104 bits (259), Expect = 4e-25
Identities = 28/242 (11%), Positives = 68/242 (28%), Gaps = 13/242 (5%)
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
+ + Y + + E A + ++ + + L L
Sbjct: 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ------K 92
Query: 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340
D+++ + Y + ++ V + + F + + A +
Sbjct: 93 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 152
Query: 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE------KA 394
+ ++ D ++ L + N V + + A + +
Sbjct: 153 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 212
Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 454
I P A+N L + +D G +S + Q L + P + L Y + +
Sbjct: 213 IKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLEN 271
Query: 455 DK 456
Sbjct: 272 QC 273
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.5 bits (192), Expect = 2e-16
Identities = 27/275 (9%), Positives = 73/275 (26%), Gaps = 12/275 (4%)
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
+ + + + + + + R A + A+ + + ++L L L
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ ++ P +++ V+ L L + A
Sbjct: 95 HEE------MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 148
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
+ + + + ++ + ++ L N +++ + + V
Sbjct: 149 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-GYNDRAVLEREVQ 207
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYK 345
Y + + H A L + P L IY+
Sbjct: 208 YTLEMIKLVPHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266
Query: 346 D--RDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
D + D + AL + ++ + + Y
Sbjct: 267 DMLENQCDNKEDILNKALELCEILAKEKDTIRKEY 301
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.1 bits (147), Expect = 1e-10
Identities = 29/247 (11%), Positives = 63/247 (25%), Gaps = 8/247 (3%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
+ + LQ AF +A++L+ N +L K + + +Y A
Sbjct: 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 103
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
+ + ++ + ++ + L D A+ + V
Sbjct: 104 IIEEQPKNYQVWH------HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ 157
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
E +D L ++ E + + N ++
Sbjct: 158 EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 217
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--FDMAI 320
+N + G + L + + L Y +ML+ D
Sbjct: 218 HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277
Query: 321 VFYELAF 327
A
Sbjct: 278 DILNKAL 284
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.8 bits (141), Expect = 5e-10
Identities = 32/254 (12%), Positives = 65/254 (25%), Gaps = 17/254 (6%)
Query: 49 KDALSY-ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107
+D Y +L+ + A L +E ++ N + + L+ E
Sbjct: 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ------KDLHE 96
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
+ ++ LVE + L +
Sbjct: 97 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 156
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYEKAALER 221
+ + +Q + LK D + V S + + +
Sbjct: 157 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 216
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
P A+ + I ++RG L + L + P+ + + LE
Sbjct: 217 PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLV---DIYEDMLENQ 272
Query: 282 INQGVAYYKKALYY 295
+ KAL
Sbjct: 273 CDNKEDILNKALEL 286
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (112), Expect = 2e-06
Identities = 4/66 (6%), Positives = 22/66 (33%)
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
I + + + Y+ + + A ++++ + R + + + +
Sbjct: 34 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93
Query: 453 HDDKLF 458
+++
Sbjct: 94 LHEEMN 99
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (256), Expect = 9e-25
Identities = 46/266 (17%), Positives = 89/266 (33%), Gaps = 10/266 (3%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+ G G+ + + + A++ DP + A+ LG +E Q A+ + +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD--------LG 273
P A + V + N A L +P + +
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 274 TKVKLEGDINQGVAYYKKAL--YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
+ + + + A+ D LGV + ++D A+ + A P
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391
+ N LG + + ++AV Y+ AL ++P + +S NLG+ G A E
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263
Query: 392 EKAIAANPTYAEAYNNLGVLYRDAGS 417
+A+ G + + S
Sbjct: 264 LEALNMQRKSRGPRGEGGAMSENIWS 289
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.3 bits (243), Expect = 4e-23
Identities = 53/297 (17%), Positives = 100/297 (33%), Gaps = 11/297 (3%)
Query: 177 IQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
K Y+ + +P P + G+ + A+ +E A + P + EA+ +G
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK--------LEGDINQGVA 287
AI+ RCL + P+ + A +A++ T+ + + L
Sbjct: 64 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 123
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGVIYK 345
+ + F + + + LGV++
Sbjct: 124 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
DKAV+C+ ALS++PN N LG + + A +A+ P Y +
Sbjct: 184 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462
NLG+ + G+ A++ + + L + SR I L +
Sbjct: 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.9 bits (203), Expect = 7e-18
Identities = 49/338 (14%), Positives = 101/338 (29%), Gaps = 42/338 (12%)
Query: 71 YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130
Y+ E + +G+ + A F AV+ DP++ A + G +
Sbjct: 8 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 67
Query: 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190
+ + A + + L P + A LA+ T+ + + + L+ P Y
Sbjct: 68 QELLAISALRRCLELKPDNQTALMALAVSFTN-------ESLQRQACEILRDWLRYTPAY 120
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A + +G + + +
Sbjct: 121 AHLVTPAEEGAGGAGLGP------------------SKRILGSLLSD-SLFLEVKELFLA 161
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310
+ + P LG L G+ ++ V + AL + LG
Sbjct: 162 AVRLDPTSIDPDVQC-----GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 216
Query: 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
+ + A+ Y A P + NLG+ + +AVE + AL+++
Sbjct: 217 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276
Query: 371 -----------LNNLGVVYTVQGKMDAAAEMIEKAIAA 397
+ L + ++ G+ DA + ++
Sbjct: 277 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 314
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.4 bits (186), Expect = 8e-16
Identities = 53/325 (16%), Positives = 99/325 (30%), Gaps = 40/325 (12%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+A+ L+E +++D ++EA G LA +
Sbjct: 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 79
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD------ 162
++L P N A + + +E +A E L P+Y
Sbjct: 80 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 139
Query: 163 --LGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
+ SL + + + A+++ LGV+++ +YD A+ C+ A
Sbjct: 140 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 199
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
RP + +G N E A+A Y R L + P + ++ N+ I+ +L
Sbjct: 200 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL------ 253
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
G + V ++ +AL G + +
Sbjct: 254 -GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW-----------------------S 289
Query: 339 NLGVIYKDRDNLDKAVECYQMALSI 363
L + D LS
Sbjct: 290 TLRLALSMLGQSDAYGAADARDLST 314
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 1e-09
Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 4/149 (2%)
Query: 322 FYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
Y+ + F G+ +L AV ++ A+ P ++ LG
Sbjct: 3 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62
Query: 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437
+ A + + + P A L V + + A + L+ P +
Sbjct: 63 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 122
Query: 438 AGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
G ++ +
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSL 151
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 101 bits (250), Expect = 2e-24
Identities = 40/254 (15%), Positives = 82/254 (32%), Gaps = 13/254 (5%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
L L+ + + + + L D A Y GV+Y L A + +A
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
RP E + +G+ G+ ++A ++ L + P + A N IAL
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG------ 118
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEA 336
G + + L +A ++ + V + +
Sbjct: 119 -GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 177
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
++ +++ S+ + S++ LG Y G +D+A + + A+A
Sbjct: 178 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237
Query: 397 ANPTYAEAYNNLGV 410
N + +
Sbjct: 238 NNVHNFVEHRYALL 251
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 96.8 bits (239), Expect = 5e-23
Identities = 39/261 (14%), Positives = 81/261 (31%), Gaps = 13/261 (4%)
Query: 197 LGVVYSELMQYDTALGCYEKA----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
L V +Q + L E+ AL A+ GV+Y + G A + + L
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
A+ P+ N + G + G+ + + L + Y A N G+A
Sbjct: 65 AIRPDMPEVFNYL-------GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117
Query: 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALSIKPNFSQS 370
+ +A + +P+ L + + D + +
Sbjct: 118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 177
Query: 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
+ + Q M+ + +E LG Y G + A ++ +
Sbjct: 178 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237
Query: 431 IDPDSRNAGQNRLLAMNYINE 451
+ + + LL ++ + +
Sbjct: 238 NNVHNFVEHRYALLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 62.1 bits (149), Expect = 3e-11
Identities = 42/265 (15%), Positives = 80/265 (30%), Gaps = 20/265 (7%)
Query: 55 ANILRSRNKFVDALALYEIVLEK----DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
A L+ + LA E +L D + +G+ + LA + FS+A+
Sbjct: 6 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ P + GI G A E++ L DP+Y A I L
Sbjct: 66 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG------- 118
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA--LGCYEKAALERPMYAEAY 228
G + + DP+ L + +L + L + + + +
Sbjct: 119 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV 178
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
+ +E A +++ + + L GD++ A
Sbjct: 179 EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL-------GDLDSATAL 231
Query: 289 YKKALYYNWHYADAMYNLGVAYGEM 313
+K A+ N H + +
Sbjct: 232 FKLAVANNVHNFVEHRYALLELSLL 256
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 59.8 bits (143), Expect = 2e-10
Identities = 31/192 (16%), Positives = 58/192 (30%)
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
L ++ E + + + A +Y GV Y + +A + A P
Sbjct: 9 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 68
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391
E N LG+ N D A E + L + P ++ + N G+ G+ A + +
Sbjct: 69 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL 128
Query: 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 451
+P L + + + K D + N +
Sbjct: 129 LAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ 188
Query: 452 GHDDKLFEAHRD 463
++L D
Sbjct: 189 TLMERLKADATD 200
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 52.1 bits (123), Expect = 6e-08
Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 4/177 (2%)
Query: 306 LGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361
L V L+ ++ + E + A+ GV+Y A + AL
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421
+I+P+ + N LG+ T G DAA E + + +PTY A+ N G+ G LA
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 422 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 478
D + DP+ LA ++E ++ + H + + ++ +
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 181
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 42.5 bits (98), Expect = 7e-05
Identities = 14/111 (12%), Positives = 32/111 (28%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
A + + L + +K+ + Q + ++ L
Sbjct: 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+ + + G Y G L A + A++ + + L+ LG
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 257
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 16/153 (10%), Positives = 32/153 (20%), Gaps = 9/153 (5%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
L + A + D + + + Q + + K D +
Sbjct: 113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172
Query: 116 ACAHTHCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ L + S L LG +
Sbjct: 173 WGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG-------DL 225
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
+ A+ + H + + S L Q
Sbjct: 226 DSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 88.0 bits (216), Expect = 2e-19
Identities = 34/301 (11%), Positives = 76/301 (25%), Gaps = 34/301 (11%)
Query: 170 AGNTQDGIQKYYEALKIDP-----HYAPAYYNLGVVYSELMQYDTALGCYEKA------A 218
GN + + AL+ P A LG V + +L ++
Sbjct: 25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 84
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK-NNMAIALTDLGTKVK 277
+ I +G L++A E+ + + + + +
Sbjct: 85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 144
Query: 278 LEGDINQGVAYYKKALYY-----NWHYADAMYNLGVAYGEMLKFD-------MAIVFYEL 325
+++ A + + + L D
Sbjct: 145 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 204
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL----NNLGVVYTVQ 381
+ + + A + ++ + A + + + L N+ +
Sbjct: 205 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 264
Query: 382 GKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
G+ + A ++E+ L LY AG S A LK+ +
Sbjct: 265 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 324
Query: 436 R 436
Sbjct: 325 G 325
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 83.4 bits (204), Expect = 7e-18
Identities = 37/317 (11%), Positives = 78/317 (24%), Gaps = 29/317 (9%)
Query: 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-----ACAHTHCGILYKDE 129
+ +D+ + E + + A A++ P A + G + +
Sbjct: 5 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK 64
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G L + + + L L G Q + +A ++
Sbjct: 65 GELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123
Query: 190 Y--------APAYYNLGVVYSELMQYDTALGCYEKAALERP-----MYAEAYCNMGVIYK 236
+ + D A + +
Sbjct: 124 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 183
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--- 293
RGDL++A + R + N + + ++ A ++ GD + +
Sbjct: 184 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 243
Query: 294 -YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKD 346
N N+ A + +F+ A + E L +Y
Sbjct: 244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 303
Query: 347 RDNLDKAVECYQMALSI 363
A AL +
Sbjct: 304 AGRKSDAQRVLLDALKL 320
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 71.9 bits (174), Expect = 4e-14
Identities = 35/314 (11%), Positives = 71/314 (22%), Gaps = 34/314 (10%)
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-----ALERPMYAEAYCNMGVIYK 236
+ ++ D +A V D A + A A +G +
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
+G+L ++A ++ ++ + +L + +G + +KA
Sbjct: 63 CKGELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121
Query: 297 WHY--------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP------------HCAEA 336
+ + D A +
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
G + R L++ S + + + + G AAA +
Sbjct: 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 241
Query: 397 A----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN----RLLAMNY 448
N + N+ G A E+ + R LL Y
Sbjct: 242 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301
Query: 449 INEGHDDKLFEAHR 462
G
Sbjct: 302 WQAGRKSDAQRVLL 315
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 69.2 bits (167), Expect = 4e-13
Identities = 34/292 (11%), Positives = 80/292 (27%), Gaps = 30/292 (10%)
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
K E M+AE + N G+ + A + L P + +A + LG
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEV 60
Query: 276 VKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329
+ +G++ + +A ++ + ++ A E AF
Sbjct: 61 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 120
Query: 330 NPHC--------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ------------ 369
+ LD+A + + + ++
Sbjct: 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180
Query: 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
G + + +++ ++ + + A + ++ G + A +
Sbjct: 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240
Query: 430 KIDPDSR--NAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
K + + GQ R +A I G + + + L
Sbjct: 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 45.3 bits (105), Expect = 1e-05
Identities = 12/139 (8%), Positives = 37/139 (26%), Gaps = 5/139 (3%)
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRD 414
+ ++ V G D A + + A+ P A + LG +
Sbjct: 4 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 63
Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQ 474
G ++ ++ +Q ++ + + + ++ +L ++
Sbjct: 64 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123
Query: 475 YTSWDNTKDPERPLVIGYV 493
+ +
Sbjct: 124 QHLEQLPMHEFLVRIRAQL 142
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.3 bits (192), Expect = 3e-17
Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 40/209 (19%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI L + G + + + + + ++ +N+G +Y+ L A + +
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAF---SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 61
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
+ A AY G++Y + AI + L
Sbjct: 62 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------------------- 102
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
NQ + Y L + + +YN+ Y + ++ A LA
Sbjct: 103 ------NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE---- 152
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKP 365
+DKA+EC +P
Sbjct: 153 --------PRHSKIDKAMECVWKQKLYEP 173
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (168), Expect = 4e-14
Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 21/180 (11%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
AI+L + G + D + + ++ +N+G Y + A +
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTR 61
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
+ + + H A A G++Y + D A++ + AL +
Sbjct: 62 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------------------N 103
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ + E N+ +Y A + + + R++ ++ +
Sbjct: 104 QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 163
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (130), Expect = 4e-09
Identities = 26/202 (12%), Positives = 53/202 (26%), Gaps = 40/202 (19%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ + + AL + V + S G + A +F+ ++ D
Sbjct: 12 GVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDKH 68
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A A+ G+LY + A + +AL
Sbjct: 69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN------------------------- 103
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
I L+ YN+ +Y++ ++ A A +
Sbjct: 104 QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS------------ 151
Query: 235 YKNRGDLESAIACYERCLAVSP 256
++ A+ C + P
Sbjct: 152 EPRHSKIDKAMECVWKQKLYEP 173
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.3 bits (189), Expect = 3e-16
Identities = 26/235 (11%), Positives = 63/235 (26%), Gaps = 26/235 (11%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI------AKNNMAIALTDLGTKVKL 278
A+ IY+ R +L A + + G V
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF------HFNPH 332
+ + + + + ++ + AI YELA
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMD 385
+ + +A + Y + + + G+
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216
Query: 386 AAAEMIEKAIAANPTYAEA-----YNNLGVLYR--DAGSISLAIDAYEQCLKIDP 433
AAA +++ + +P +A++ +L D+ +S ++ +++D
Sbjct: 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.9 bits (123), Expect = 8e-08
Identities = 27/224 (12%), Positives = 57/224 (25%), Gaps = 19/224 (8%)
Query: 89 GICLQMQNMGRLAFDSFSEAVKLDPQNAC------AHTHCGILYKDEGRLVEAAESYHKA 142
+++ LA DSF +A + + +K G V A +S A
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYN 196
+ + I Y A + +
Sbjct: 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163
Query: 197 LGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ + QY A Y K L + + + G+ D +A +
Sbjct: 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ PNF ++ + + +++ + +
Sbjct: 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.0 bits (118), Expect = 3e-07
Identities = 18/173 (10%), Positives = 40/173 (23%), Gaps = 6/173 (3%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 387
A+ C IY+ R L+ A + + A + + + G A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
+ +E AI + + + + Y + + +
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 448 YINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTH 500
+A +YS+ + + Y
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.1 bits (178), Expect = 2e-15
Identities = 24/205 (11%), Positives = 62/205 (30%), Gaps = 16/205 (7%)
Query: 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
P+A+ L + G L + + Y A+ +P A Y N + Y ++ Q + A
Sbjct: 2 PSAQ----ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 57
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
L +A +A+ +G + AIA +R +++ + + +
Sbjct: 58 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA- 116
Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+ ++ + ++ + + + + + + +
Sbjct: 117 -----------LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGH 165
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVE 355
I D ++
Sbjct: 166 EDDGHIRAQQACIEAKHDKYMADMD 190
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.3 bits (176), Expect = 3e-15
Identities = 29/197 (14%), Positives = 68/197 (34%), Gaps = 9/197 (4%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A L + G ++ + + A Y +A+ N A N + Y +M + + A+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
A + +A LG + ++ D+A+ Q A S+ + + + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD-----IPSALR 118
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A + +I + E+ + + A ++ ++ + D + +
Sbjct: 119 IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC- 177
Query: 446 MNYINEGHDDKLFEAHR 462
I HD + +
Sbjct: 178 ---IEAKHDKYMADMDE 191
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.3 bits (176), Expect = 4e-15
Identities = 22/139 (15%), Positives = 46/139 (33%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
A+ G +A CY A++ P + N + Y + + A +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
A+ + +A+ LG + S AI ++ + + R + + + I +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 454 DDKLFEAHRDWGKRFMRLY 472
E R + + Y
Sbjct: 124 RWNSIEERRIHQESELHSY 142
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.0 bits (170), Expect = 2e-14
Identities = 25/191 (13%), Positives = 60/191 (31%), Gaps = 12/191 (6%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N L K+ +A A Y + ++ + + +C A A++LD Q
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ AH G + EA + +A S + D+ ++L++A
Sbjct: 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN------FGDDIPSALRIA---- 120
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+K + +++ + + + + + + L ++ I
Sbjct: 121 --KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178
Query: 235 YKNRGDLESAI 245
+ +
Sbjct: 179 EAKHDKYMADM 189
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.5 bits (166), Expect = 7e-14
Identities = 26/181 (14%), Positives = 50/181 (27%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A + G K+ A Y A NP A N + Y ++A+ +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
AL + ++ LG D A +++A + + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
E+ + + + + + A + E H D G + D
Sbjct: 124 RWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 480 N 480
Sbjct: 184 K 184
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.4 bits (140), Expect = 2e-10
Identities = 25/213 (11%), Positives = 62/213 (29%), Gaps = 12/213 (5%)
Query: 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138
S + + +G L + A + A+ +P A +T+ + Y + +A
Sbjct: 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198
+AL D A L ++ + + I A + + +
Sbjct: 61 CRRALELDGQSVKAHFFLGQCQLEM-------ESYDEAIANLQRAYSLAKEQRLNFGDDI 113
Query: 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
+ + + ER ++ E+ + + + E + +R +
Sbjct: 114 PSALRIAKK-----KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDD 168
Query: 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
+ A + ++ V +K
Sbjct: 169 GHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 71.2 bits (174), Expect = 3e-14
Identities = 21/178 (11%), Positives = 52/178 (29%), Gaps = 8/178 (4%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
+ A+ A +P A ++ + + ++A E ++ + P + + L
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 375 GVVY-TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
+ Q + D A + L + + Q ++
Sbjct: 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130
Query: 434 DSRNAGQNRLLAMNYINEGHDDKL---FEAHRDWGKRFMRLYSQYTSWDNTKDPERPL 488
+ + + + + + DD+L E G F+ + + K L
Sbjct: 131 EKGFLANDT--SFSDVRDI-DDRLGGYIELFSTAGNYFLVPIASINTL-EIKSATSLL 184
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 67.4 bits (164), Expect = 5e-13
Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 1/132 (0%)
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
EG + Q + +A+ + A + F+ A + P +
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 339 NLGVIYKDRDNLDKAVECY-QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
L + K + + + + V + +E+ +
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128
Query: 398 NPTYAEAYNNLG 409
N+
Sbjct: 129 RQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 67.0 bits (163), Expect = 6e-13
Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 13/154 (8%)
Query: 93 QMQNM---GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
Q +N G+L A + EA+K P++A + L +G A E +++ P
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61
Query: 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID-PHYAPAYYNLGVVYSELMQ 206
Y P A L + +K A +D Q A + +
Sbjct: 62 EYLPGASQLRHL-------VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD 114
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
Y+ + R + D
Sbjct: 115 YEQVSELALQIEELRQEKGFLANDTSFSDVRDID 148
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 63.5 bits (154), Expect = 9e-12
Identities = 14/141 (9%), Positives = 32/141 (22%), Gaps = 6/141 (4%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G Q ++ EA+K P A + + ++ A ++ P Y
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
+ + K + + +N + D Q
Sbjct: 69 QLRHLVKAAQARKDFAQGAAT------AKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122
Query: 290 KKALYYNWHYADAMYNLGVAY 310
+ + +
Sbjct: 123 LQIEELRQEKGFLANDTSFSD 143
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 62.4 bits (151), Expect = 2e-11
Identities = 23/182 (12%), Positives = 54/182 (29%), Gaps = 19/182 (10%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
+ K+ALS + AL L ++ + L + A +
Sbjct: 2 QWKNALS-------EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLM 54
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+++KL P+ + L K + A+ A + + +
Sbjct: 55 QSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV------SFNL 108
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
++ + + + + ++ + +S++ D LG +E A
Sbjct: 109 SMVSQDYEQVSELALQIEELRQEKGFLANDTS--FSDVRDIDDRLG----GYIELFSTAG 162
Query: 227 AY 228
Y
Sbjct: 163 NY 164
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 62.4 bits (151), Expect = 2e-11
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
+G++ A E++ +AI A+P A ++ L G A + Q +K+ P+
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 441 NRLLAMNYINEGHDDKLFEAHRDW 464
L +
Sbjct: 69 Q--LRHLVKAAQARKDFAQGAATA 90
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 61.2 bits (148), Expect = 5e-11
Identities = 17/182 (9%), Positives = 40/182 (21%), Gaps = 9/182 (4%)
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
+ G L+ A+ + SP +++ L GD + +++
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCID-------GDFERADEQLMQSIKLF 60
Query: 297 WHYADAMYNLGVAYGEMLKFDMAIV-FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
Y L + + ++ E
Sbjct: 61 PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
++ N+ D IE A + ++ L +
Sbjct: 121 LALQIEELRQEKGFLANDTSFSDVRDID-DRLGGYIELFSTAGNYFLVPIASINTLEIKS 179
Query: 416 GS 417
+
Sbjct: 180 AT 181
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.9 bits (157), Expect = 3e-13
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A +G + D ++A+ Y++ + P N A + G K +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGV 342
+ ++ A A +G +Y + K+ AI FY LA H P + C
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123
Query: 343 IYKDR 347
I K++
Sbjct: 124 ILKEQ 128
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (140), Expect = 5e-11
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
A LG + + D A++ Y A + P + N VY +G + E+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 394 AIAANPTYAEAY-------NNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
AI E Y +G Y AI Y + L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (137), Expect = 1e-10
Identities = 24/108 (22%), Positives = 37/108 (34%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A LG + +DTAL Y+KA P N +Y +GD E+
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
+ V +A A +G E + +Y K+L +
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (134), Expect = 3e-10
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 7/114 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A+ +LG + ++ Y +A ++DP N VY E Y+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 217 AALERPMYAEAYC-------NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
A E Y +G Y + AI Y + LA ++ K
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.3 bits (132), Expect = 7e-10
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 8/116 (6%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A LG + FD A+ Y+ A +P N +Y ++ + +K E +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 360 ALSIKPNFS-------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
A+ + ++ +G Y + K A K++A + T +
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 3e-09
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 7/108 (6%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A+ +LG + D + + +Y KA + + N Y E ++ E
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 326 AFHFNPHCAE-------ACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
A E A +G Y + A+ Y +L+
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 9e-08
Identities = 24/109 (22%), Positives = 37/109 (33%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ A G + A + Y KA DP+ A V + G K
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
+ I+ E + A AY +G Y + +Y A+ Y K+ E
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 1e-06
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 48 GKDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
GK AL N + F AL Y+ E D N+ + + +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 105 FSEAVKLDPQNACAHTHC-------GILYKDEGRLVEAAESYHKALSADPS 148
+A+++ +N + G Y E + +A Y+K+L+ +
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 2e-06
Identities = 20/102 (19%), Positives = 36/102 (35%)
Query: 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
G + A + +A +LDP N T+ +Y ++G + E KA+
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
+ +A +G S +D I Y ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 1e-05
Identities = 15/80 (18%), Positives = 30/80 (37%)
Query: 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
LG + D A + +KA +PT N +Y + G + + E+ +
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 430 KIDPDSRNAGQNRLLAMNYI 449
++ ++R + A I
Sbjct: 66 EVGRENREDYRQIAKAYARI 85
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 63.1 bits (152), Expect = 3e-12
Identities = 19/182 (10%), Positives = 47/182 (25%), Gaps = 26/182 (14%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+E E+ A G +Y G A+ Y + ++ + A
Sbjct: 4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS---- 59
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
A NL + Y ++ ++ A+ + A +
Sbjct: 60 ----------------------ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
+ G + + A ++ L + P + + + + +
Sbjct: 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYA 157
Query: 394 AI 395
+
Sbjct: 158 NM 159
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 56.1 bits (134), Expect = 7e-10
Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 15/133 (11%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHF---------------NPHCAEACNNLGVI 343
A + G Y + K+ A++ Y + A NL +
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
Y KAVEC AL + + L G + + ++A EK + NP
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 404 AYNNLGVLYRDAG 416
A + + + A
Sbjct: 134 ARLQIFMCQKKAK 146
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 55.0 bits (131), Expect = 2e-09
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 15/132 (11%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI---------------DPHYAPAYYNLGVVY 201
A ++ + GT G + +Y + + + A+ NL + Y
Sbjct: 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74
Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
+L +Y A+ C +KA + G + ESA +E+ L V+P + A
Sbjct: 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134
Query: 262 KNNMAIALTDLG 273
+ + +
Sbjct: 135 RLQIFMCQKKAK 146
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 53.0 bits (126), Expect = 8e-09
Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 15/144 (10%)
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---------------KPNF 367
+E+ A G +Y +AV Y +S +
Sbjct: 4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFL 63
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
+ NL + Y + A E +KA+ + + G A +E+
Sbjct: 64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK 123
Query: 428 CLKIDPDSRNAGQNRLLAMNYINE 451
L+++P ++ A + E
Sbjct: 124 VLEVNPQNKAARLQIFMCQKKAKE 147
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 43.8 bits (102), Expect = 1e-05
Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 8/136 (5%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKA--------ALERPMYAEAYCNMGVIYKNRGDL 241
A G VY + +Y A+ Y K L + + + N
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
+ Y + + + L G L + ++K L N
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 302 AMYNLGVAYGEMLKFD 317
A + + + + +
Sbjct: 134 ARLQIFMCQKKAKEHN 149
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALS--------ADPSYKPAAECLAIVLTDLGT 165
+ A G +Y G+ V+A Y K +S ++ K + L +L
Sbjct: 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
++ +AL +D Y G + ++++A G +EK P
Sbjct: 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132
Query: 226 EAYCNMGVIYKNRGDLESA 244
A + + K +
Sbjct: 133 AARLQIFMCQKKAKEHNER 151
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 39.6 bits (91), Expect = 3e-04
Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 15/125 (12%)
Query: 55 ANILRSRNKFVDALALYEIV---------------LEKDSGNVEAHIGKGICLQMQNMGR 99
+ K+V A+ Y + +S + A + +C
Sbjct: 22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 81
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
A + +A+ LD N G A + K L +P K A + +
Sbjct: 82 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141
Query: 160 LTDLG 164
Sbjct: 142 QKKAK 146
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.3 bits (148), Expect = 5e-12
Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 5/118 (4%)
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE----- 392
+ ++L K + +Q + + D + I
Sbjct: 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL 62
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
+ + L V A+ L+ +P + A + L +
Sbjct: 63 LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (138), Expect = 9e-11
Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 6/113 (5%)
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA-- 292
+ DL ++ A + + A L DI +G+ ++
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLP 64
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
D ++ L V + +++ A+ + P +A +I K
Sbjct: 65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (133), Expect = 5e-10
Identities = 13/118 (11%), Positives = 31/118 (26%), Gaps = 5/118 (4%)
Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM---AIVFYELAF 327
+ ++ D+ + ++ + D IV E
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 328 --HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
+ L V +KA++ + L +P +Q+ ++ K
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (126), Expect = 4e-09
Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 6/113 (5%)
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
L++ + + +A K A L + + GI E L
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLP 64
Query: 186 I--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
+ L V L +Y+ AL P +A +I K
Sbjct: 65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (120), Expect = 2e-08
Identities = 11/111 (9%), Positives = 22/111 (19%), Gaps = 5/111 (4%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD-----TALGCYEK 216
+ L + +K+ + D L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
+ + + V + E A+ L P AK +
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (92), Expect = 1e-04
Identities = 6/107 (5%), Positives = 21/107 (19%), Gaps = 8/107 (7%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAECLA 157
F + + + + + L +
Sbjct: 18 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD---- 73
Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
+ L + ++ L+ +P A ++ +
Sbjct: 74 -YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.002
Identities = 9/113 (7%), Positives = 19/113 (16%), Gaps = 8/113 (7%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES---AIACYERCLAVSPNFEIAK 262
++ + + I E L
Sbjct: 14 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK----- 68
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
+ L + + + Y + L A + M K
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (135), Expect = 6e-10
Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 30/179 (16%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
E+ + G +Y G + A+ Y++ ++ N A
Sbjct: 8 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA---------- 57
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
+ NL + + ++ F AI A + + + +
Sbjct: 58 ----------------QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 101
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
G + ++ + A +Q L + PN + L V + A EK + AN
Sbjct: 102 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR----EKKLYAN 156
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 3e-06
Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 15/138 (10%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEA---------------LKIDPHYAPAYYNLGVVY 201
+ ++ + GT G + + +Y + K ++ NL + +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
+L + A+ KA + G + D E A A +++ L + PN + A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 262 KNNMAIALTDLGTKVKLE 279
K +A+ + ++ E
Sbjct: 133 KTQLAVCQQRIRRQLARE 150
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 6e-05
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 15/133 (11%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMA---------------LSIKPNFSQSLNNLGVVY 378
+ G +Y +A+ Y+ + S NL + +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
AA E KA+ + + + G + LA +++ L++ P+++ A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 439 GQNRLLAMNYINE 451
+ I
Sbjct: 133 KTQLAVCQQRIRR 145
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (131), Expect = 1e-09
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
AE Y D E+AI Y + + ++P+ I N ++A
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-------TECYGY 62
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
+ +A+ + Y Y + + KF A+ YE PH +A
Sbjct: 63 ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122
Query: 345 K--DRDNLDKAVECYQMALSIKPN 366
K + ++A+ + S+ +
Sbjct: 123 KIVKQKAFERAIAGDEHKRSVVDS 146
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 4e-08
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 5/145 (3%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A L D + +Y +A+ N A N +AY + A+
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
A + + A+ Y+ + +KP+ + + +
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-- 127
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGV 410
+ E+AIA + ++L +
Sbjct: 128 ---KAFERAIAGDEHKRSVVDSLDI 149
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 6e-08
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 2/142 (1%)
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
K + A+ Y A+ AI + + + A++
Sbjct: 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 72
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK--NRGDLES 243
+D Y YY L ++ AL YE +P +A K + E
Sbjct: 73 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 132
Query: 244 AIACYERCLAVSPNFEIAKNNM 265
AIA E +V + +I +
Sbjct: 133 AIAGDEHKRSVVDSLDIESMTI 154
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 2e-07
Identities = 21/123 (17%), Positives = 42/123 (34%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AE Y + + A++ Y A+ + P+ + N + Y A +
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
AI + Y + Y G A+ YE +K+ P ++A + +
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129
Query: 454 DDK 456
++
Sbjct: 130 FER 132
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 7e-05
Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 9/136 (6%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A Y + Y+ A+ Y +A P A Y N + Y A+ R
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA- 309
+ + + A + L G + Y+ + H DA
Sbjct: 70 AIELDKKYIKGYYRRAASNMAL-------GKFRAALRDYETVVKVKPHDKDAKMKYQECN 122
Query: 310 -YGEMLKFDMAIVFYE 324
+ F+ AI E
Sbjct: 123 KIVKQKAFERAIAGDE 138
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 8e-04
Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 19/150 (12%)
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG-------CYEKAA 218
LK N + Y A+K + + Y +A
Sbjct: 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 71
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
Y + Y G +A+ YE + V P+ + AK + K
Sbjct: 72 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK--- 128
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGV 308
+++A+ + H + +L +
Sbjct: 129 ---------AFERAIAGDEHKRSVVDSLDI 149
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 1e-09
Identities = 21/93 (22%), Positives = 34/93 (36%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
+ AE +G + D E+ L EI+ + L L V +GD+
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
++ + KK L + + A NL M K
Sbjct: 63 DKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 2e-09
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDA 386
AE LG + + + AL + L+ L QG +D
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYR 413
A + +K + +P + A NL
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEY 91
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 3e-08
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYE-------LAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A+ + LG + ++ E + L + +LDK
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
A+ + L + P ++ NL + K
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 7e-07
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLES 243
A + LG V Y E+A + + +GDL+
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 244 AIACYERCLAVSPNFEIAKNNMAIALTDLG 273
A+ ++ L + P + A N+ +
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMA 94
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 2e-05
Identities = 14/82 (17%), Positives = 27/82 (32%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G + E +AL + + VL L ++ G+ + +
Sbjct: 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71
Query: 183 ALKIDPHYAPAYYNLGVVYSEL 204
L++DP + A NL +
Sbjct: 72 LLELDPEHQRANGNLKYFEYIM 93
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.002
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
L+A+ S++ L V + +++ E L
Sbjct: 3 LTAEDSFE-----LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY 57
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
+ D AL +K P + A N+
Sbjct: 58 QQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.1 bits (131), Expect = 2e-09
Identities = 27/180 (15%), Positives = 48/180 (26%), Gaps = 29/180 (16%)
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
K + + +E N+G + + E AI Y + L
Sbjct: 18 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------ 59
Query: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
++ A + N+G +M + A+ A +P +
Sbjct: 60 -------SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 112
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
A ++ D+A+ + A I P L V EKA
Sbjct: 113 ALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK----EKAA 168
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.2 bits (126), Expect = 7e-09
Identities = 18/153 (11%), Positives = 50/153 (32%), Gaps = 16/153 (10%)
Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA------------- 183
+ + D ++ L ++G + + N + I+KY +
Sbjct: 7 PDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 66
Query: 184 ---LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
K+ P N+G ++ + A+ +A P +A ++ +
Sbjct: 67 ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE 126
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ A+A ++ ++P + + + +
Sbjct: 127 YDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.7 bits (117), Expect = 1e-07
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 16/130 (12%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF----------------NPHCAEACNNLGVI 343
++ + N+G + + ++MAI Y + P N+G
Sbjct: 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
+ AV+ AL I P+ +++L + + D A ++KA P
Sbjct: 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146
Query: 404 AYNNLGVLYR 413
L + +
Sbjct: 147 IQAELLKVKQ 156
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 54.2 bits (129), Expect = 2e-09
Identities = 26/165 (15%), Positives = 47/165 (28%), Gaps = 25/165 (15%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
Y+ E+ A G + + ++ AI Y+ L + E + + +
Sbjct: 6 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD----- 60
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
NL Y + + AI + +
Sbjct: 61 --------------------KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 100
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
+A LGV L++A E A S+ PN N+ +
Sbjct: 101 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 51.5 bits (122), Expect = 2e-08
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 16/133 (12%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----------------YAPAYYNLGVV 200
A + + G + I KY EAL H NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260
Y++ Y A+ K +A +GV G LE A + +++PN
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 261 AKNNMAIALTDLG 273
+N+ + + L
Sbjct: 137 IRNSYELCVNKLK 149
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 46.5 bits (109), Expect = 1e-06
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 16/134 (11%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQM----------------ALSIKPNFSQSLNNLGVV 377
A G + ++ +++A+ Y+ K NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437
Y A + K + + +A LGV G + A + + ++P++ +
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 438 AGQNRLLAMNYINE 451
+ L +N + E
Sbjct: 137 IRNSYELCVNKLKE 150
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 45.4 bits (106), Expect = 3e-06
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 16/130 (12%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----------------AEACNNLGVI 343
A + G + + + + AIV Y+ A F H NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
Y + KA++ L I N ++L LGV G ++ A E + KA + NP +
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 404 AYNNLGVLYR 413
N+ +
Sbjct: 137 IRNSYELCVN 146
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 39.2 bits (90), Expect = 3e-04
Identities = 18/139 (12%), Positives = 40/139 (28%), Gaps = 23/139 (16%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEK----------------AALERPMYAEAYCNMGVI 234
A G + + + + A+ Y++ ++ + N+
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
Y D AI + L + N A + +A G + + KA
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG-------FLEEAKENLYKAAS 129
Query: 295 YNWHYADAMYNLGVAYGEM 313
N + D + + ++
Sbjct: 130 LNPNNLDIRNSYELCVNKL 148
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 38.1 bits (87), Expect = 7e-04
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Query: 55 ANILRSRNKFVDALALYE----------------IVLEKDSGNVEAHIGKGICLQMQNMG 98
N +N+ +A+ Y+ ++ +K + + ++ C
Sbjct: 24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY 83
Query: 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
A D S+ +K+D N A G+ G L EA E+ +KA S +P+ +
Sbjct: 84 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143
Query: 159 VLTDLG 164
+ L
Sbjct: 144 CVNKLK 149
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 2e-09
Identities = 17/113 (15%), Positives = 37/113 (32%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ + G + D A+ Y A +PH +N Y + + KA E
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ +KP++ + + + + A E+ + + L +
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 2e-08
Identities = 19/108 (17%), Positives = 36/108 (33%)
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
L + G K G+I+ + Y +A+ + H N AY + + A
Sbjct: 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 64
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
P + + + + ++A Y+ L + N Q L
Sbjct: 65 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 6e-07
Identities = 21/108 (19%), Positives = 38/108 (35%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
G N+D A++CY A+ + P+ +N Y +G A E K
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
+ P + + Y+ A YE+ LK + ++ +
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 110
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 1e-06
Identities = 28/107 (26%), Positives = 39/107 (36%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
L + G GN D +Q Y EA+K+DPH Y N Y++ Y A K
Sbjct: 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
+P + + Y + E A YE L N K +
Sbjct: 66 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 2e-06
Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 7/121 (5%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
G + G+++ A+ CY + + P+ + +N + +GD +
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSA-------AYAKKGDYQK 55
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
K + + A + +F+ A YE + + L +
Sbjct: 56 AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
Query: 345 K 345
Sbjct: 116 A 116
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 3e-05
Identities = 19/105 (18%), Positives = 36/105 (34%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N S DAL Y ++ D N + + + + A++ + V L P
Sbjct: 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 69
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
++ + R EA +Y + L + + E L +
Sbjct: 70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 2e-04
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 7/117 (5%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
G + D AL CY +A P Y N Y +GD + A +
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307
+ + P++ + A AL L + Y++ L + + L
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFL-------NRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 50.3 bits (118), Expect = 2e-07
Identities = 30/226 (13%), Positives = 65/226 (28%), Gaps = 7/226 (3%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
LG + + A +EKA + N+GV+Y +E +
Sbjct: 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFY 61
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
A + + + + + + + N+ + YY KA + A G+
Sbjct: 62 AKACDLNYSNGCHLLGNLY-YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGK 120
Query: 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372
++ D + + + C LG +Y K ++ + + S
Sbjct: 121 VVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPG 180
Query: 373 N----LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ + + + A NLG + +
Sbjct: 181 CFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 226
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 39.1 bits (89), Expect = 0.001
Identities = 28/242 (11%), Positives = 51/242 (21%), Gaps = 10/242 (4%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G E +A + + KA D L ++ K K +
Sbjct: 9 GAKSYKEKDFTQAKKYFEKA--CDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
+ + + AL Y KA + A +
Sbjct: 67 LNYSNGCHLLGNLYYSGQGVS-QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRD 125
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302
A A N + K +
Sbjct: 126 FKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAG 185
Query: 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAVECYQ 358
+GE + + C NLG + + + N +A+E ++
Sbjct: 186 NMY---HHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFK 242
Query: 359 MA 360
Sbjct: 243 KG 244
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 47.2 bits (111), Expect = 1e-06
Identities = 21/157 (13%), Positives = 36/157 (22%), Gaps = 26/157 (16%)
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
A G+ GR +A+ AL + + +D
Sbjct: 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGP-------------------VLDDLRDFQ 53
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
A + A+ + + E E P + + Y
Sbjct: 54 FVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYL 113
Query: 238 RGDLESAIACYERC-------LAVSPNFEIAKNNMAI 267
A+ Y R L + P + N I
Sbjct: 114 SDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI 150
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.8 bits (92), Expect = 3e-04
Identities = 12/127 (9%), Positives = 18/127 (14%), Gaps = 12/127 (9%)
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
A G G Q + AL A
Sbjct: 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV------------EPFAT 60
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
A + + P L Y + + A
Sbjct: 61 ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 120
Query: 388 AEMIEKA 394
+
Sbjct: 121 LGAYRRV 127
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.3 bits (88), Expect = 0.001
Identities = 20/134 (14%), Positives = 29/134 (21%), Gaps = 12/134 (8%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ +F A L + G V + ++ A L
Sbjct: 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEP------------FATALVED 65
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
AHT GR P +P L G +
Sbjct: 66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR 125
Query: 175 DGIQKYYEALKIDP 188
+ L IDP
Sbjct: 126 RVKTTLADDLGIDP 139
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 44.7 bits (104), Expect = 4e-06
Identities = 17/141 (12%), Positives = 42/141 (29%), Gaps = 18/141 (12%)
Query: 224 YAEAYCNMGVIYK--NRGDLESAIACYERCLAVSPNFEI------------AKNNMAIAL 269
AY + + G+ + A A R + +S +A AL
Sbjct: 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYN----WHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
L + + ++ + Y+ + N + A+Y+ +A + + A+ ++
Sbjct: 66 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125
Query: 326 AFHFNPHCAEACNNLGVIYKD 346
+ +
Sbjct: 126 VVEMIEERKGETPGKERMMEV 146
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 44.0 bits (102), Expect = 1e-05
Identities = 15/143 (10%), Positives = 35/143 (24%), Gaps = 25/143 (17%)
Query: 334 AEACNNLGVIYK--DRDNLDKAVECYQMALSIKPNFSQ------------SLNNLGVVYT 379
A L + D+A + A+ I L
Sbjct: 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 66
Query: 380 VQGKMDAAAEMIEKAIAANPTYAEA-----------YNNLGVLYRDAGSISLAIDAYEQC 428
D A +KA+ E + + G + A+ +++
Sbjct: 67 GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126
Query: 429 LKIDPDSRNAGQNRLLAMNYINE 451
+++ + + + M +
Sbjct: 127 VEMIEERKGETPGKERMMEVAID 149
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 36.3 bits (82), Expect = 0.004
Identities = 14/142 (9%), Positives = 29/142 (20%), Gaps = 18/142 (12%)
Query: 190 YAPAYYNLGVVYSELMQ--YDTALGCYEKA------------ALERPMYAEAYCNMGVIY 235
AY L +L+ YD A +A A + +
Sbjct: 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD----LGTKVKLEGDINQGVAYYKK 291
+ A+ ++ L + + G + + +KK
Sbjct: 66 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125
Query: 292 ALYYNWHYADAMYNLGVAYGEM 313
+
Sbjct: 126 VVEMIEERKGETPGKERMMEVA 147
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.0 bits (86), Expect = 0.001
Identities = 8/82 (9%), Positives = 14/82 (17%), Gaps = 15/82 (18%)
Query: 316 FDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
+ + + E L + A + N Q
Sbjct: 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113
Query: 375 GVVYTVQGKMDAAAEMIEKAIA 396
M+E I
Sbjct: 114 --------------SMVEDKIQ 121
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.7 bits (85), Expect = 0.002
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 5/83 (6%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVF 322
N A L K D GV + +Y L + ++ ++ MA +
Sbjct: 40 NYAWGLI----KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 95
Query: 323 YELAFHFNPHCAEACNNLGVIYK 345
+ F + + ++
Sbjct: 96 VDTLFEHERNNKQVGALKSMVED 118
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.9 bits (83), Expect = 0.003
Identities = 6/64 (9%), Positives = 16/64 (25%), Gaps = 1/64 (1%)
Query: 342 VIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400
+ D ++ V+ + L L + G+ A ++
Sbjct: 46 IKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105
Query: 401 YAEA 404
+
Sbjct: 106 NKQV 109
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.8 bits (89), Expect = 0.001
Identities = 20/278 (7%), Positives = 63/278 (22%), Gaps = 33/278 (11%)
Query: 164 GTSLKLAGNTQDGIQKYYE-ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
+ + YE L + H+ +Y + + G A
Sbjct: 22 PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA----- 76
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
+ + A YER ++ + +
Sbjct: 77 ---------------KLFSDEAANIYERAISTLL------KKNMLLYFAYADYEESRMKY 115
Query: 283 NQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA-CNNL 340
+ + Y + L + ++ A
Sbjct: 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 175
Query: 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400
+ Y + A + +++ L + + + + + + + E+ + +
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235
Query: 401 YAEA----YNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
E + + G ++ + ++ +
Sbjct: 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 36.0 bits (81), Expect = 0.004
Identities = 18/146 (12%), Positives = 31/146 (21%), Gaps = 17/146 (11%)
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK------------ 277
+ + E E +P L +L
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61
Query: 278 --LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
E + + Y + FD+A F++ A P
Sbjct: 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMAL 361
+L + K E Y+ L
Sbjct: 122 YLKSLEMTAK---APQLHAEAYKQGL 144
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 36.0 bits (81), Expect = 0.004
Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 24/144 (16%)
Query: 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN----------LDKAV 354
+ + +L F+ E + NP A+ G + + + +A+
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61
Query: 355 ECYQMALSIKPNFSQSLNNLGVVY-----------TVQGKMDAAAEMIEKAIAANPTYAE 403
++ AL I P +++ +G Y + D A + ++A+ P
Sbjct: 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQ 427
+L + + L +AY+Q
Sbjct: 122 YLKSLEMTAKAPQ---LHAEAYKQ 142
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 625 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.89 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.89 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.86 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.84 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.84 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.69 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.68 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.67 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.66 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.64 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.64 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.48 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.48 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.47 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.46 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.46 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.46 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.45 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.44 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.44 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.42 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.41 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.36 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.16 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.14 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.13 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.13 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.04 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.97 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.87 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.76 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.29 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.27 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.21 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.16 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.67 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.54 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.39 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.24 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 89.87 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 87.73 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 81.98 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-40 Score=332.25 Aligned_cols=381 Identities=27% Similarity=0.370 Sum_probs=356.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (625)
++.+|..+++.|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006937 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210 (625)
Q Consensus 131 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 210 (625)
++++|+..+.++....|..... ....+......+....+...........+.........+......+....+
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred cccccccccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 9999999999999999998776 445555666678888888888888888888899999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHH
Q 006937 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290 (625)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 290 (625)
...+.+.+...|+...++..+|.++...|++++|...++++++.+|++...+..++. ++...|++++|+..++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-------~~~~~~~~~~A~~~~~ 227 (388)
T d1w3ba_ 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN-------VLKEARIFDRAVAAYL 227 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHHTTTCTTHHHHHHH
T ss_pred HHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhh-------hhhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998776555544 4455679999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q 006937 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370 (625)
Q Consensus 291 ~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 370 (625)
++....+.....+..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+++++...|.+...
T Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 307 (388)
T d1w3ba_ 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 006937 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (625)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (625)
+..++.++...|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.++.++..+
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~ 382 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998875433
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-36 Score=302.63 Aligned_cols=359 Identities=26% Similarity=0.380 Sum_probs=338.5
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+.+++.++.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+.++.+..|.........+.
T Consensus 30 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T d1w3ba_ 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (625)
.....+....+...........+..... ....+......+....+...+.+.+...|+...++..+|.++...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (388)
T d1w3ba_ 110 ALVAAGDMEGAVQAYVSALQYNPDLYCV-------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHH-------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccc-------cccccccccccchhhhhHHHHHHhhccCcchhHHHHhhccccccc
Confidence 9999999999999888888887777665 455566677789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
|++++|...++++++.+|++..++..+|.++...|++++|+..++++....+.....+..++.+ +...|++++
T Consensus 183 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~ 255 (388)
T d1w3ba_ 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV-------YYEQGLIDL 255 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH-------HHHTTCHHH
T ss_pred CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHH-------HHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999887665555544 445689999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006937 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (625)
|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.+...+..+|.++...|++++|+.+|+++++++
T Consensus 256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 335 (388)
T d1w3ba_ 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006937 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (625)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (625)
|+++.++..+|.++...|++++|+..|+++++++|+++.++.++|.+|.++||
T Consensus 336 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999986
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.2e-28 Score=232.66 Aligned_cols=252 Identities=20% Similarity=0.259 Sum_probs=164.6
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 239 (625)
.+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.++++.+|++...+..+|.++...|
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 006937 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 319 (625)
++++|+..+++++...|................. ..........+...+.+.+|
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~a 155 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG--------------------------LGPSKRILGSLLSDSLFLEV 155 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------------CTTHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcc--------------------------cccchhhHHHHHHhhHHHHH
Confidence 9999999999999999876432221111100000 00000011112223334445
Q ss_pred HHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 320 IVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 320 ~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
+..+.+++..+|+ ++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|+++++.
T Consensus 156 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 235 (323)
T d1fcha_ 156 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 235 (323)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHH
Confidence 5555555555443 24445555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 006937 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (625)
Q Consensus 398 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (625)
+|+++.+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 236 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 275 (323)
T d1fcha_ 236 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 275 (323)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence 5555555555555555555555555555555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.5e-27 Score=225.80 Aligned_cols=250 Identities=20% Similarity=0.264 Sum_probs=216.5
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
+....+.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|.++++++|++...+..+|.++
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence 44557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--------HHHhHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHH
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIV--------LTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYN 196 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~--------~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~ 196 (625)
...|++++|+..+++++...|............ .......+...+.+.+|+..|.+++..+|+ ++.++..
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~ 177 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence 999999999999999999988765432211111 112233445667889999999999999887 4778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhh
Q 006937 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (625)
Q Consensus 197 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (625)
+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++..
T Consensus 178 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----- 252 (323)
T d1fcha_ 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN----- 252 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999988766655555554
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 006937 277 KLEGDINQGVAYYKKALYYNWHYADAM 303 (625)
Q Consensus 277 ~~~~~~~~A~~~~~~~l~~~~~~~~~~ 303 (625)
.|++++|+..|+++++++|++...+
T Consensus 253 --~g~~~~A~~~~~~al~l~p~~~~~~ 277 (323)
T d1fcha_ 253 --LGAHREAVEHFLEALNMQRKSRGPR 277 (323)
T ss_dssp --HTCHHHHHHHHHHHHHHHHTC----
T ss_pred --CCCHHHHHHHHHHHHHhCCcChhhh
Confidence 6799999999999999988876543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.8e-22 Score=191.26 Aligned_cols=207 Identities=13% Similarity=0.048 Sum_probs=191.1
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
+.-.+.+..++.++.+.+.+++|+.+++++++.+|++..+|..+|.++...| ++++|+..++++++.+|++..+|..+|
T Consensus 40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~ 119 (315)
T d2h6fa1 40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 3446677788999999999999999999999999999999999999999987 599999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (625)
.++...|++++|+..++++++.+|++..+ +..+|.++...|++++|+..++++++++|.+..+|.++|.++..
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a-------~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~ 192 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAKNYHA-------WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 192 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhcchHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999887 77888888899999999999999999999999999999999988
Q ss_pred cCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 006937 204 LMQ------YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (625)
Q Consensus 204 ~~~------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (625)
.+. +++|+..+.++++.+|++..++..++.++... ..+++...+++++++.|+..
T Consensus 193 ~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~ 253 (315)
T d2h6fa1 193 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHS 253 (315)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCC
T ss_pred ccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcC
Confidence 776 68999999999999999999999999986654 46889999999998888753
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.3e-22 Score=193.66 Aligned_cols=209 Identities=14% Similarity=0.090 Sum_probs=169.7
Q ss_pred HHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHH
Q 006937 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG-RLVEAAESYHKALSADPSYKPAA 153 (625)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 153 (625)
+..+|+..+++..+|.++...+.+++|+..++++++++|++..+|..+|.++...| ++++|+..++++++.+|++..+
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a- 114 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV- 114 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH-
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhH-
Confidence 44567778889999999999999999999999999999999999999999999877 4899999999999999999887
Q ss_pred HHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006937 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233 (625)
Q Consensus 154 ~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 233 (625)
+..+|.++...|++++|+..++++++++|.+..+|.++|.++...|++++|+..++++++++|.+..+|.++|.
T Consensus 115 ------~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~ 188 (315)
T d2h6fa1 115 ------WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 188 (315)
T ss_dssp ------HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------HHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHH
Confidence 77777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCC------HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCC
Q 006937 234 IYKNRGD------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298 (625)
Q Consensus 234 ~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 298 (625)
++...+. +++|+..+.++++.+|++..++..++.++.. ....++...+++++++.|.
T Consensus 189 ~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~--------~~~~~~~~~~~~~~~l~~~ 251 (315)
T d2h6fa1 189 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD--------RGLSKYPNLLNQLLDLQPS 251 (315)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT--------TCGGGCHHHHHHHHHHTTT
T ss_pred HHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh--------cChHHHHHHHHHHHHhCCC
Confidence 8887765 4566666666666666665555444433322 1234445555555554443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=2.6e-23 Score=201.66 Aligned_cols=270 Identities=9% Similarity=-0.091 Sum_probs=161.1
Q ss_pred hCCC-HHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhc----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 006937 60 SRNK-FVDALALYEIVLEKDSGNVEAHIGKGICLQMQN----------MGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (625)
Q Consensus 60 ~~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (625)
..+. .++|+.+++++++.+|++..+|..++.++...+ ++++|+.+++++++.+|++..++..+|.++..
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence 3443 478888888888888888888877766655443 35666667777777777776666666666655
Q ss_pred cCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 129 EGR--LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 129 ~g~--~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
.++ +++|+..++++++.+|.+..++ +...|.++...+.+++|+..++++++.+|.+..+|..+|.++...|+
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~~------~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHCW------DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred hccccHHHHHHHHHHHHhhCchhhhhh------hhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 543 5666666666666666655442 23344555555666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHH
Q 006937 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (625)
+++|+..+.++++..|.....+ ..+...+..+++...
T Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a~~~--------------------------------------- 230 (334)
T d1dcea1 194 QPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWF--------------------------------------- 230 (334)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSSCSHHHH---------------------------------------
T ss_pred HHHHHHHHHHhHHhHHHHHHHH----HHHHHhcchhHHHHH---------------------------------------
Confidence 6655555555555544332222 122333444444444
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 006937 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (625)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (625)
+.+++...|.....+..++.++...+++.+|+..+.+++..+|.+..++..+|.++...|++++|+++|+++++++|.
T Consensus 231 --~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~ 308 (334)
T d1dcea1 231 --YHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308 (334)
T ss_dssp --HHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred --HHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence 444444445444445555555555566666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHH
Q 006937 367 FSQSLNNLGVVYTV 380 (625)
Q Consensus 367 ~~~~~~~la~~~~~ 380 (625)
....|..++..+..
T Consensus 309 ~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 309 RAAYLDDLRSKFLL 322 (334)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhH
Confidence 66666666555553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=2.2e-23 Score=202.27 Aligned_cols=272 Identities=10% Similarity=-0.064 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHH---HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 006937 132 LVEAAESYHKALSADPSYKPAAECLAIVL---TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ-- 206 (625)
Q Consensus 132 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~---~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-- 206 (625)
.++|+.+++++++.+|++..++.....++ ...+..+...|.+++|+..++++++.+|++..++..+|.++...++
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~ 124 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence 35666666666666666655544433332 2334456667788899999999999999999999999988888765
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHH
Q 006937 207 YDTALGCYEKAALERPMYAEAY-CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (625)
+++|+..++++++.+|.+..++ ...|.++...+.+++|+..++++++.+|.+..++..++.++..++ ++++|
T Consensus 125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~-------~~~~A 197 (334)
T d1dcea1 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH-------PQPDS 197 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS-------CCCCS
T ss_pred HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc-------CHHHH
Confidence 8899999999999999888875 467788888899999999999998888888777666666666654 44444
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 006937 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (625)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (625)
+..+++++...|..... ...+...+..+++...+.+++...|.+...+..++.++...+++.+|+..+.++++.+|
T Consensus 198 ~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 273 (334)
T d1dcea1 198 GPQGRLPENVLLKELEL----VQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK 273 (334)
T ss_dssp SSCCSSCHHHHHHHHHH----HHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhHHhHHHHHHH----HHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 44444444333332222 22234445556666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006937 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (625)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (625)
.+..++..+|.++...|++++|+++|+++++++|.+...|..|+..+..
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 274 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 6666666666666666666666666666666666666666666655543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.9e-20 Score=179.72 Aligned_cols=313 Identities=11% Similarity=-0.019 Sum_probs=186.5
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (625)
+++....+|.++...|++++|+..++++++..|++. .++..+|.++...|++++|+..|+++++..+..... ..
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~ 89 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HY 89 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch-HH
Confidence 345555566666666666666666666666666542 356667777777777777777777776654433221 22
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 006937 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--------HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---- 223 (625)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---- 223 (625)
....+..++..+...|++..|...+.+++...+ .....+..+|.++...|+++.+...+.+++...+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 344466777777888888888888887776421 12456778899999999999999999999887654
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHH
Q 006937 224 -YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302 (625)
Q Consensus 224 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 302 (625)
....+...+..+...+++.++...+.++................++...+..+...+++++|...+++++...+.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 248 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH- 248 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG-
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch-
Confidence 356778888999999999999999998877654432222222333344444444444555555555544444332210
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CCCCHHHHHHHHH
Q 006937 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGV 376 (625)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~ 376 (625)
.....+.++|.++...|++++|+..+++++.. .|....++..+|.
T Consensus 249 -----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 299 (366)
T d1hz4a_ 249 -----------------------------FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 299 (366)
T ss_dssp -----------------------------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 01233444455555555555555555554422 2233445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC---------CcHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 377 VYTVQGKMDAAAEMIEKAIAANP---------TYAEAYNNLGVLYRDAGSISLAIDA 424 (625)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~g~~~~A~~~ 424 (625)
+|...|++++|++.+++++++.+ .....+..+...+...++.+++...
T Consensus 300 ~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 300 LYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 55555555555555555555422 1123344444555555665555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=7.9e-20 Score=169.99 Aligned_cols=79 Identities=19% Similarity=0.116 Sum_probs=33.8
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 006937 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (625)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 241 (625)
+|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..++++++.+|.+......++..+...+..
T Consensus 77 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 155 (259)
T d1xnfa_ 77 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK 155 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHH
T ss_pred hchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhH
Confidence 3333333333444444444444444444444444444444444444444444444444444444444444444444333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=8.8e-20 Score=169.67 Aligned_cols=225 Identities=16% Similarity=0.126 Sum_probs=146.3
Q ss_pred ChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 172 NTQDGIQKYYEALKIDP----HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (625)
Q Consensus 172 ~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 247 (625)
+.+.|+..+++++...+ ..+.+++.+|.+|...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 45566666666665432 23456677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006937 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (625)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 327 (625)
|+++++++|++ +.++..+|.++...|++++|+..+++++
T Consensus 94 ~~~al~~~p~~-----------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al 132 (259)
T d1xnfa_ 94 FDSVLELDPTY-----------------------------------------NYAHLNRGIALYYGGRDKLAQDDLLAFY 132 (259)
T ss_dssp HHHHHHHCTTC-----------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHhhh-----------------------------------------hhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77666666654 4455566666666666666666666666
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCcHH
Q 006937 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
+.+|.+......++..+...+..+.+...........+..... .+...+. ..+..+.+...+.......|....
T Consensus 133 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (259)
T d1xnfa_ 133 QDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW--NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 210 (259)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHH
Confidence 6666666666666666666665555554444444444333211 1111111 223355555555666666677778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
+++.+|.+|..+|++++|+.+|++++..+|++...+
T Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 211 TNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 889999999999999999999999999999875444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=9.5e-19 Score=170.98 Aligned_cols=282 Identities=14% Similarity=0.013 Sum_probs=221.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-----
Q 006937 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----- 189 (625)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~----- 189 (625)
.+++....|.++...|++++|+..+++++...|++.... .+.++..+|.++...|++++|+..|+++++..+.
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 88 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS--RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 88 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence 456777789999999999999999999999998865432 3445788899999999999999999999886433
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 006937 190 -YAPAYYNLGVVYSELMQYDTALGCYEKAALERP--------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (625)
Q Consensus 190 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 260 (625)
....+..++.++...|++..|...+.+++...+ .....+..+|.++...|+++.+...+.+++...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 168 (366)
T d1hz4a_ 89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 168 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence 245678889999999999999999999876432 12456777888999999999999999888877665432
Q ss_pred HHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------C
Q 006937 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-------C 333 (625)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~ 333 (625)
.. ...++...+..+...+++.++...+.++...... .
T Consensus 169 ~~------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 169 QQ------------------------------------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp GG------------------------------------GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred hh------------------------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 11 1223444555566666666666666666554221 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTYAE 403 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 403 (625)
..++..++.++...|++++|...+++++...+.+ ...+.++|.++...|++++|...+++++.. .|....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 4567788999999999999999999999887654 456788999999999999999999999854 345578
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
++..+|.+|..+|++++|++.+++++++.+.
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999998553
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=4.6e-16 Score=146.33 Aligned_cols=233 Identities=17% Similarity=0.106 Sum_probs=170.1
Q ss_pred chHhHHHHHHHHHhCC-------------CHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 006937 47 EGKDALSYANILRSRN-------------KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g-------------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (625)
+++.++..|+.....+ +|++|.++|.++ |.+|...|++++|+..|.+++++..
T Consensus 3 ~~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~ 68 (290)
T d1qqea_ 3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQK 68 (290)
T ss_dssp CHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCcchhHHHHhcCCccccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4566677776666543 567777666654 7889999999999999999998732
Q ss_pred ------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH-hCChHHHHHHHHHHHhh
Q 006937 114 ------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL-AGNTQDGIQKYYEALKI 186 (625)
Q Consensus 114 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~-~~~~~~A~~~~~~~l~~ 186 (625)
....++..+|.+|...|++++|+..|++++.+.+.... ....+.++..+|.++.. .|++++|++.|++++++
T Consensus 69 ~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l 147 (290)
T d1qqea_ 69 KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (290)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc-chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 23568899999999999999999999999987655432 22345668888888865 59999999999999887
Q ss_pred CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 187 DPH------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-------EAYCNMGVIYKNRGDLESAIACYERCLA 253 (625)
Q Consensus 187 ~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (625)
.+. ...++..+|.++..+|+|++|+..|++++...+... ..+...+.++...|++..|...++++++
T Consensus 148 ~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 332 245688999999999999999999999999877643 4567889999999999999999999999
Q ss_pred cCCCcHHHHhhHHHHHHHhchhhhh--cCCHHHHHHHHHHHHhhC
Q 006937 254 VSPNFEIAKNNMAIALTDLGTKVKL--EGDINQGVAYYKKALYYN 296 (625)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~l~~~ 296 (625)
.+|....... ...+..+...+.. .+.+++|+..|+++.+++
T Consensus 228 ~~~~~~~sre--~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 228 EDPNFADSRE--SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp C-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred hCCCccchHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 9987554321 1122222222221 334666666666555444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5.4e-16 Score=123.06 Aligned_cols=110 Identities=17% Similarity=0.136 Sum_probs=104.8
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
++.+...|..++..|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..+.++++++|+++.+++.+|.++.
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
.+|++++|+..|+++++.+|+++.....+.
T Consensus 83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 112 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999988754433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=2.7e-16 Score=147.89 Aligned_cols=217 Identities=16% Similarity=0.118 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 66 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (625)
++.++++++-+........+..+. ....++|++|.++|.++ |.+|...|++++|+.+|.+++++
T Consensus 3 ~~~~~l~~aek~~~~~~~~~~~~~--~~~~~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~ 66 (290)
T d1qqea_ 3 DPVELLKRAEKKGVPSSGFMKLFS--GSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADY 66 (290)
T ss_dssp CHHHHHHHHHHHSSCCCTHHHHHS--CCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCcchhHHHHhc--CCccccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHH
Confidence 345566666555443332222111 12234577787777654 78899999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 006937 146 DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSE-LMQYDTALGCYEKAA 218 (625)
Q Consensus 146 ~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~-~~~~~~A~~~~~~al 218 (625)
...... ....+.++..+|.+|...|++++|++.+++++.+.+.. ..++..+|.++.. .|++++|++.|++++
T Consensus 67 ~~~~~~-~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~ 145 (290)
T d1qqea_ 67 QKKAGN-EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (290)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHcCC-CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 433221 12246779999999999999999999999999885443 5678889988865 699999999999998
Q ss_pred HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHH
Q 006937 219 LERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (625)
Q Consensus 219 ~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 292 (625)
++.+. ...++..+|.++..+|++++|+..|++++...+............+...+.++...+++..|...++++
T Consensus 146 ~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (290)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 76432 256689999999999999999999999999988876555555555555555555566666666666666
Q ss_pred HhhCCCC
Q 006937 293 LYYNWHY 299 (625)
Q Consensus 293 l~~~~~~ 299 (625)
.+.+|..
T Consensus 226 ~~~~~~~ 232 (290)
T d1qqea_ 226 QSEDPNF 232 (290)
T ss_dssp GCC----
T ss_pred HHhCCCc
Confidence 6665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.5e-17 Score=168.80 Aligned_cols=231 Identities=13% Similarity=0.065 Sum_probs=158.1
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (625)
Q Consensus 175 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (625)
+|+++|++++++.|+.+.++.++|.++..++++++| |++++..+|+....+...+.+. ...+..+++.+++..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999876 8899999987666554333332 22356778888887765
Q ss_pred CCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 006937 255 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334 (625)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 334 (625)
......... .....+.+....+.++.++..+++++..+|.+...+..+|..+...|++++|+..+.+++..++ .
T Consensus 79 ~~~~~~~~~----~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~ 152 (497)
T d1ya0a1 79 RANPNRSEV----QANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--Q 152 (497)
T ss_dssp SSCTTTTHH----HHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--H
T ss_pred ccCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--H
Confidence 433211110 0111233344466788888888888888999999999999999999999999999999888765 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (625)
.++.++|.++...|++++|+.+|++|++++|+++.+++++|.++...|++.+|+.+|.+++...|..+.++.+|+.++.+
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred cC
Q 006937 415 AG 416 (625)
Q Consensus 415 ~g 416 (625)
..
T Consensus 233 ~~ 234 (497)
T d1ya0a1 233 AL 234 (497)
T ss_dssp HT
T ss_pred hh
Confidence 44
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.7e-17 Score=168.46 Aligned_cols=210 Identities=13% Similarity=0.071 Sum_probs=116.7
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH-HHHHHHHHHH
Q 006937 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--MYA-EAYCNMGVIY 235 (625)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~-~~~~~la~~~ 235 (625)
++..+|.++..++++++| |++++..+|+....+...+.+. ...|..+++.+++..+... +.. .....++.+.
T Consensus 22 a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~ 96 (497)
T d1ya0a1 22 SKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLE 96 (497)
T ss_dssp SSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHH
Confidence 344566777777777665 6777777776555443332222 1224556666666665432 211 1222344555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 006937 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (625)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 315 (625)
...+.|+.|+..+.+++...|++.. .+..+|..+...++.++|+..+++++..++ ..++..+|.++...|+
T Consensus 97 ~a~~~Y~~ai~~l~~~~~l~~~~~~-------~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~ 167 (497)
T d1ya0a1 97 AASGFYTQLLQELCTVFNVDLPCRV-------KSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQ 167 (497)
T ss_dssp HHHHHHHHHHHHHTC--------------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCCChhhHH-------HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHccc
Confidence 5566677777777776666665433 345566666777777777777777776554 3567777777777777
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC
Q 006937 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (625)
Q Consensus 316 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (625)
+++|+.+|+++++++|++...++.+|.++...|++.+|+.+|.+++...|..+.++.+|+.++.+..
T Consensus 168 ~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 7777777777777777777777777777777777777777777777777777777777777765433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1e-15 Score=121.46 Aligned_cols=103 Identities=20% Similarity=0.310 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006937 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (625)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (625)
..|..++..|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|+++.+++++|.++..+|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCCChhhhhh
Q 006937 419 SLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 419 ~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
++|+..|+++++++|+++.+..+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~ 110 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEG 110 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 55555555555555555544433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.4e-15 Score=130.98 Aligned_cols=133 Identities=16% Similarity=0.281 Sum_probs=115.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC
Q 006937 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (625)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (625)
+++.|..+...|++++|++.|.+ +.+.++.+++++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 34568888999999999988875 456678899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 383 KMDAAAEMIEKAIAANPTY----------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
++++|+..|++++...+.+ .++++++|.++..+|++++|.+.+++++++.|+....
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~ 156 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS 156 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGG
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchH
Confidence 9999999999998765432 4788999999999999999999999999999985433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=2.6e-14 Score=135.46 Aligned_cols=226 Identities=10% Similarity=0.040 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------------CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Q 006937 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM--------------QYDTALGCYEKAALE-RPMYAEAYCNMGVIYKN 237 (625)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~--------------~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~ 237 (625)
...+..+|++++...|.++..|+..+..+...+ ..++|...|+++++. .|.+...+...+.++..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 345667788888888888888887776554332 234455555555542 44444455555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCH
Q 006937 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKF 316 (625)
Q Consensus 238 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~ 316 (625)
.|++++|...|++++ ...|.+ ..+|..++......|++
T Consensus 112 ~~~~~~a~~i~~~~l-----------------------------------------~~~~~~~~~~w~~~~~~~~~~~~~ 150 (308)
T d2onda1 112 RMKYEKVHSIYNRLL-----------------------------------------AIEDIDPTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp TTCHHHHHHHHHHHH-----------------------------------------TSSSSCTHHHHHHHHHHHHHHHCH
T ss_pred cccHHHHHHHHHHHH-----------------------------------------HHhcCChHHHHHHHHHHHHHcCCh
Confidence 555555555555554 444433 23566666677777777
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 317 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
+.|...|+++++..|.+...+...+..... .|+.+.|...|+++++..|+++..+..++..+...|+++.|..+|++++
T Consensus 151 ~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 888888888888888777777777766443 5778888888888888888888888888888888888888888888888
Q ss_pred HhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 396 AANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 396 ~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
...|.+ ..+|..........|+.+.+...++++.+..|+.....
T Consensus 231 ~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~ 278 (308)
T d2onda1 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK 278 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred HhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccc
Confidence 876643 34677777777788899999999888888888775543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=9.3e-14 Score=131.58 Aligned_cols=191 Identities=8% Similarity=0.015 Sum_probs=126.4
Q ss_pred HhCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 006937 169 LAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-EAYCNMGVIYKNRGDLESAIA 246 (625)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~ 246 (625)
..+..++|...|+++++. .|.+...|..++.++...|++++|...|+++++..|.+. .+|..++......|+++.|..
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 335568899999999975 788899999999999999999999999999999998764 578899999999999999999
Q ss_pred HHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006937 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (625)
Q Consensus 247 ~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 326 (625)
.|+++++..|.....+...+..... ..++.+.|..+|++++..+|+++..+...+..+...|+++.|..+|+++
T Consensus 156 i~~~al~~~~~~~~~~~~~a~~e~~------~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a 229 (308)
T d2onda1 156 IFKKAREDARTRHHVYVTAALMEYY------CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHTSTTCCTHHHHHHHHHHHH------TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHH------hccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999998888776554433332211 1245555555555555555555555555555555555555555555555
Q ss_pred HhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 006937 327 FHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (625)
Q Consensus 327 l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (625)
+...|.+ ...|..........|+.+.+.++++++.+..|
T Consensus 230 i~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 230 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5443322 22333333333444444444444444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6.1e-15 Score=124.54 Aligned_cols=112 Identities=18% Similarity=0.202 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHc
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 381 (625)
.+...|..++..|+|++|+..|+++++++|+++.+|.++|.++...|++++|+..|+++++++|++..++..+|.++..+
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 34456777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006937 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (625)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (625)
|++++|+..+++++.++|++..++..++.+..
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 77777777777777777777777766666543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=6.1e-15 Score=124.56 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=105.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
.++.+...|..+++.|+|++|+..|+++++.+|+++.+|..+|.++..+|++++|+..|+++++++|++..++..+|.++
T Consensus 9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
...|++++|+..+++++.+.|++......+.
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~ 119 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQ 119 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999988754433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=5e-15 Score=128.96 Aligned_cols=139 Identities=13% Similarity=0.091 Sum_probs=109.7
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
+-.++..|..+...|+|++|++.|+++ .|.++.+++++|.++..+|++++|+..|+++++++|+++.++..+|.++.
T Consensus 5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 345678899999999999999999874 56678999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHH---------HHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAE---------CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~---------~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (625)
.+|++++|+..|++++...+.+..... ..+.+++++|.++...|++++|++.+.+++...|+
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999987665432100 01233445555555555555555555555555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=9e-15 Score=129.39 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (625)
+..+...|..++..|++++|+..|+++++++|+++.+|.++|.+|...|++++|+..|+++++++|+++.+|+++|.+|.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 414 DAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
.+|++++|+..|+++++++|++...+
T Consensus 84 ~l~~~~~A~~~~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 84 EMESYDEAIANLQRAYSLAKEQRLNF 109 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 77777777777777777777655443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=1.2e-14 Score=128.63 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=101.1
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
.+++.+...|..++..|+|++|+..|+++++.+|.++.+|..+|.+|...|++++|+..|+++++++|+++.+++.+|.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKP 151 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (625)
+..+|++++|+..|++++++.|+...
T Consensus 82 ~~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 99999999999999999998876443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.3e-13 Score=114.73 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 006937 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (625)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 368 (625)
...|..++..|++++|+..|++++...|.. ..++.++|.+|.++|++++|+.+++++++++|+++
T Consensus 17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~ 96 (170)
T d1p5qa1 17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 96 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccch
Confidence 344445555555555555555555443321 23445566666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006937 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (625)
.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....++..
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 147 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 147 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666555544443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.50 E-value=9.9e-14 Score=108.65 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006937 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (625)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (625)
.+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++..++..+|.+|..+|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHH
Q 006937 417 SISLAIDAYEQCL 429 (625)
Q Consensus 417 ~~~~A~~~~~~al 429 (625)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 6666666666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.50 E-value=7.9e-14 Score=109.22 Aligned_cols=97 Identities=19% Similarity=0.191 Sum_probs=93.3
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
..+..+..|..+++.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.+|
T Consensus 15 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 15 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 94 (112)
T ss_dssp GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHH
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 006937 127 KDEGRLVEAAESYHKAL 143 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al 143 (625)
...|++++|++.+++.+
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999999876
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.48 E-value=1.4e-11 Score=113.54 Aligned_cols=229 Identities=21% Similarity=0.301 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAKNNMA 266 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (625)
|.+++.+|..+...+++++|+++|+++.+. .+..+++.+|.+|.. ..++..|..+++.+.... ++.+...++
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~ 77 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence 455556666666666666666666665543 345556666666555 445566666665554432 223333333
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGV 342 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 342 (625)
..+... .....+.+.|...++++.... ...+...++..+.. ......|...+.+... +.+...+..+|.
T Consensus 78 ~~~~~~---~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~ 150 (265)
T d1ouva_ 78 NLYYSG---QGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGS 150 (265)
T ss_dssp HHHHHT---SSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred cccccc---cccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhh
Confidence 322211 112345566666666665443 23444445554443 3345555555555443 445666777777
Q ss_pred HHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006937 343 IYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (625)
Q Consensus 343 ~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (625)
++.. ..+...+..+++.+.+ +.++.+.+++|.++.. ..++++|+.+|+++.+. .++.+.++||.+|..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYN 226 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHT
T ss_pred hhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHc
Confidence 7775 3466677777777764 4567788888887776 56788888888888776 357788888888875
Q ss_pred ----cCCHHHHHHHHHHHHhcCCC
Q 006937 415 ----AGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 415 ----~g~~~~A~~~~~~al~~~p~ 434 (625)
..++++|.++|+++.+..+.
T Consensus 227 G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 227 GEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCccCHHHHHHHHHHHHHCcCH
Confidence 34778888888888777544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.5e-12 Score=110.46 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=72.6
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006937 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (625)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 237 (625)
.++.++|.++...|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+...
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34677888888888888888888888888888888888888888888888888888888888888888888888888776
Q ss_pred cCCHHHH
Q 006937 238 RGDLESA 244 (625)
Q Consensus 238 ~g~~~~A 244 (625)
.+...+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.4e-13 Score=107.82 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=98.2
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006937 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (625)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 162 (625)
..+..+|..++..|+|++|+.+|+++++++|+++.++..+|.+|..+|++++|+..++++++++|++...+..++.++..
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34567888899999999999999999999999999999999999999999999999999999888888888888888999
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 006937 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (625)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 197 (625)
+|.++...+++++|+..|++++..++. +.....+
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 118 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 999999999999999999999988765 4444333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.47 E-value=3.1e-13 Score=115.06 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006937 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (625)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (625)
.|....++.++|.++.++|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...++
T Consensus 73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~ 152 (169)
T d1ihga1 73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34445555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHH
Q 006937 410 VLYRDAGSIS 419 (625)
Q Consensus 410 ~~~~~~g~~~ 419 (625)
.+........
T Consensus 153 ~~~~~l~~~~ 162 (169)
T d1ihga1 153 KVKQKIKAQK 162 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.46 E-value=1.4e-12 Score=110.58 Aligned_cols=116 Identities=22% Similarity=0.236 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 006937 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPH---------------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (625)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 367 (625)
+...|..++..|++.+|+..|++++...+. ...++.++|.+|..+|++++|+.+++++++++|++
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~ 97 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence 344455555555555555555555543221 12345667777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (625)
..+++.+|.++..+|++++|+..|+++++++|++..+...++.+....++.
T Consensus 98 ~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 148 (168)
T d1kt1a1 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH 148 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence 777777777777777777777777777777777777777777666555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.46 E-value=7.5e-11 Score=108.59 Aligned_cols=227 Identities=20% Similarity=0.260 Sum_probs=184.1
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006937 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (625)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 234 (625)
.++.+|..+...+++++|+++|+++.+. .+..+++.||.+|.. ..++..|..+++.+.... ++.+...+|.+
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~~ 79 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNL 79 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccccc
Confidence 4888999999999999999999999875 578999999999998 779999999999987654 67888889888
Q ss_pred HHH----cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 006937 235 YKN----RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310 (625)
Q Consensus 235 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 310 (625)
+.. ..+.+.|...++++.+..+. .....++..+... .........+...+.+... +.+...+..+|.++
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~--~a~~~l~~~~~~~---~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKYA--EGCASLGGIYHDG---KVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLY 152 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHC---SSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHhhhhhhhhh--hHHHhhcccccCC---CcccchhHHHHHHhhhhhc--ccccchhhhhhhhh
Confidence 875 56889999999999876553 3333344333321 1235567788888877654 45678899999999
Q ss_pred Hh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH--
Q 006937 311 GE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV-- 380 (625)
Q Consensus 311 ~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-- 380 (625)
.. ..+...+...++.+.+ +.++.+.+.+|.++.. ..++++|+.+|+++.+. .++.++++||.+|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~ 228 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGE 228 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTS
T ss_pred ccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCC
Confidence 86 4567788888888775 4679999999999987 67999999999999887 578999999999986
Q ss_pred --cCCHHHHHHHHHHHHHhCCC
Q 006937 381 --QGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 381 --~g~~~~A~~~~~~al~~~p~ 400 (625)
..++++|+++|+++......
T Consensus 229 g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 229 GVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCccCHHHHHHHHHHHHHCcCH
Confidence 44899999999999887654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.4e-13 Score=107.42 Aligned_cols=98 Identities=10% Similarity=0.021 Sum_probs=44.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcC
Q 006937 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAG 416 (625)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g 416 (625)
..+...+++++|.+.|++++.++|+++.+++++|.++...+ ++++|+..|++++..+|.. ..+++++|.+|..+|
T Consensus 7 n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g 86 (122)
T d1nzna_ 7 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444322 2233444444444444332 234444444444555
Q ss_pred CHHHHHHHHHHHHhcCCCChhhh
Q 006937 417 SISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 417 ~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
++++|+.+|+++++++|++..+.
T Consensus 87 ~~~~A~~~~~~aL~~~P~~~~A~ 109 (122)
T d1nzna_ 87 EYEKALKYVRGLLQTEPQNNQAK 109 (122)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhHHHHHHHHHHHHhCcCCHHHH
Confidence 55555555555555555444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.45 E-value=8.4e-13 Score=109.90 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
++.++|.+|.++|++++|+.+++++++++|++..+++.+|.++..+|++++|+..|+++++++|++..+...+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l 141 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4455666666666666666666666666666666666666666666666666666666666666665555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.1e-13 Score=106.82 Aligned_cols=108 Identities=12% Similarity=0.014 Sum_probs=95.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHh---cCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHH
Q 006937 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQN--ACAHTHCGILY 126 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~ 126 (625)
-.++..+...+++++|.+.|+++++.+|.++.+++++|.++... +++++|+..|++++..+|.+ ..+++.+|.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999864 55668999999999988765 45899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 159 (625)
...|++++|+.+|+++++++|++..+...+..+
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 999999999999999999999999885544433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.44 E-value=2.4e-12 Score=107.08 Aligned_cols=113 Identities=21% Similarity=0.202 Sum_probs=100.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------HHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------VEAHIGKGICLQMQNMGRLAFDSFSEAVK 110 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (625)
.+..+...|..++..|+|.+|+..|++++...+.. ..++.++|.||+.+|++++|+..++++++
T Consensus 16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~ 95 (153)
T d2fbna1 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 95 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence 45667789999999999999999999999865532 23677899999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006937 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (625)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 159 (625)
++|.+..+++.+|.++...|++++|+..|+++++++|++..+...+..+
T Consensus 96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998875554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=8.8e-13 Score=106.01 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 006937 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (625)
Q Consensus 192 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (625)
..+..+|..++..|+|++|+.+|+++++.+|+++.++.++|.+|..+|++++|+..++++++++|++...+..++.++..
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34667899999999999999999999999999999999999999999999999999999999999888888888899999
Q ss_pred hchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 006937 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304 (625)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 304 (625)
+|.++...+++++|+.+|++++..++. ++...
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 116 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLK 116 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHH
Confidence 999999999999999999998887764 44433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.42 E-value=9.1e-13 Score=112.12 Aligned_cols=136 Identities=16% Similarity=0.092 Sum_probs=106.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307 (625)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 307 (625)
+...|..+...|++++|+..|.++++..+... +...........|....++.++|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~nla 84 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-------------------------AAAEDADGAKLQPVALSCVLNIG 84 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-------------------------HHSCHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh-------------------------hhhhhHHHHHhChhhHHHHHHHH
Confidence 44567777777888888888877765432211 01111122233455677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHH
Q 006937 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387 (625)
Q Consensus 308 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 387 (625)
.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+........++
T Consensus 85 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 85 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888776665554
Q ss_pred H
Q 006937 388 A 388 (625)
Q Consensus 388 ~ 388 (625)
.
T Consensus 165 ~ 165 (169)
T d1ihga1 165 E 165 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.41 E-value=3.4e-13 Score=110.91 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=65.3
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355 (625)
Q Consensus 276 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 355 (625)
+.+.+.+++|+..|+++++.+|+++++++.+|.++...+++..+.+ ..+.+++|+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e------------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD------------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH------------------------HHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH------------------------HHHHHHHHHH
Confidence 3444555555555555555555555555555555554333322211 1223455666
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006937 356 CYQMALSIKPNFSQSLNNLGVVYTVQG-----------KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (625)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (625)
.|+++++++|+++.+++++|.+|..+| ++++|.++|+++++++|++..++..|+.+...
T Consensus 63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka 132 (145)
T d1zu2a1 63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 132 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence 666666666666666666666665544 35667777777777777777666666666433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.41 E-value=7.2e-12 Score=106.13 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=97.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYK--------PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (625)
+...|..++..|++.+|+..|++++...+... ........++.++|.++...|++++|+..+++++.++|.+
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~ 97 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence 34445555555555555555555544322211 1122234567889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES-AIACYERCL 252 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al 252 (625)
..+++.+|.++..+|++++|+..|+++++++|++..+...++.+....+.+.+ ..+.|.+.+
T Consensus 98 ~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877665543 334444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.36 E-value=8.8e-13 Score=108.33 Aligned_cols=115 Identities=21% Similarity=0.182 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006937 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (625)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (625)
+-+..|++++.....-....-.-+.++..+|.++...+++..+.+ ..+.+++|+..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e------------------------~~~~~~~Ai~~ 63 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD------------------------AKQMIQEAITK 63 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH------------------------HHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH------------------------HHHHHHHHHHH
Confidence 446667777766544333333446677777776654433322211 12234555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHc
Q 006937 323 YELAFHFNPHCAEACNNLGVIYKDRD-----------NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (625)
Q Consensus 323 ~~~al~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 381 (625)
|+++++++|+++.+++++|.+|..+| ++++|+++|+++++++|++..++..++.+....
T Consensus 64 ~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 64 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence 55555555555555555555555443 367888888888888888888887777775443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.1e-10 Score=87.63 Aligned_cols=77 Identities=21% Similarity=0.186 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (625)
+.++.+|.++.+.|++.+|+.+|++|+++.|.+ ..++.++|.++.+.|++++|+.+++++++++|+++.++.+
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 334455555555555555555555555443221 3445555555555555555555555555555555555555
Q ss_pred HHHH
Q 006937 408 LGVL 411 (625)
Q Consensus 408 la~~ 411 (625)
++.+
T Consensus 86 l~~~ 89 (95)
T d1tjca_ 86 LKYF 89 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.2e-10 Score=87.36 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=70.7
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-------HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (625)
.+++..+.+|..+++.|+|.+|+..|+++++..|.+ ..++..+|.++...|++++|+..++++++++|+++.+
T Consensus 3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a 82 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (95)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence 467888999999999999999999999999875543 5688899999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 006937 119 HTHCGILYK 127 (625)
Q Consensus 119 ~~~la~~~~ 127 (625)
+.+++.+..
T Consensus 83 ~~Nl~~~~~ 91 (95)
T d1tjca_ 83 NGNLKYFEY 91 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888876544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.13 E-value=6.2e-11 Score=98.87 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=75.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Q 006937 341 GVIYKDRDNLDKAVECYQMALSIKPNF------------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-------- 400 (625)
Q Consensus 341 a~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------- 400 (625)
|..++..|+|++|+..|++++++.|+. ..++.++|.+|..+|++++|+..+++++.+.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 556666677777777777777665543 346778888888888888888888888876331
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 401 ---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 401 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
...+++++|.+|..+|++++|+..|++++++.|+.....
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~ 137 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 137 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH
Confidence 234788999999999999999999999999987665543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.13 E-value=3.7e-11 Score=100.26 Aligned_cols=103 Identities=19% Similarity=0.048 Sum_probs=88.0
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------------HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC-
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN------------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ- 114 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 114 (625)
+-.++..|..++..|+|++|+..|++++++.|+. ..++.++|.+|..+|++++|+..+++++++.|.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 3445666999999999999999999999987764 357889999999999999999999999987442
Q ss_pred ----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006937 115 ----------NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (625)
Q Consensus 115 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (625)
...+++.+|.+|...|++++|+..|++++++.|+..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 234788999999999999999999999999866543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.04 E-value=1.4e-10 Score=105.02 Aligned_cols=133 Identities=9% Similarity=-0.036 Sum_probs=111.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006937 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388 (625)
Q Consensus 309 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 388 (625)
-.+..|++++|+..++++++.+|++..++..++.++...|++++|+..|+++++++|++...+..++.++...+..+++.
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999888888887777666665
Q ss_pred HHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 389 EMIEKAIA-ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 389 ~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
..+.+... ..|.....+...+.++...|+.++|.+.++++.+..|+.+..+.+
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence 54433322 245556777888999999999999999999999999999877655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.97 E-value=9.2e-10 Score=99.47 Aligned_cols=131 Identities=10% Similarity=-0.058 Sum_probs=98.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 006937 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (625)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (625)
++..+..|++++|+..++++++.+|+++.++..++.++...|++++|+..|+++++++|++..++..++.++...+..++
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999888888876666655
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 006937 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (625)
Q Consensus 135 A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (625)
+...+.+.....+ +..+ ..+...+..+...|++++|.+.++++.+..|..+
T Consensus 83 a~~~~~~~~~~~~--p~~~----~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 83 FAQGAATAKVLGE--NEEL----TKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HTTSCCCEECCCS--CHHH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHhhhhhcccC--chHH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 5443333222211 1111 1144455666667777777777777777766543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.87 E-value=2.3e-08 Score=84.39 Aligned_cols=123 Identities=17% Similarity=0.049 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 006937 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (625)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 379 (625)
...+...|......|++++|+..|.+++.+.+......... +. -.......+.+....++..++.++.
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~-----w~~~~r~~l~~~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQ-----FVEPFATALVEDKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------ST-----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888889999999999999988876653211110 01 1111222233344678899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhcCCC
Q 006937 380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC-------LKIDPD 434 (625)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~p~ 434 (625)
..|++++|+.+++++++.+|.+..+|..++.++...|++.+|++.|+++ +.+.|.
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999999999999999999999998 446665
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.76 E-value=2.7e-08 Score=83.95 Aligned_cols=117 Identities=15% Similarity=-0.078 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 006937 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304 (625)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 304 (625)
...+...|......|++++|+..|.+++.+.+......... +.+- ......+.+....++.
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~--------------~~w~-----~~~r~~l~~~~~~a~~ 71 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD--------------FQFV-----EPFATALVEDKVLAHT 71 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT--------------STTH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc--------------hHHH-----HHHHHHHHHHHHHHHH
Confidence 35566777777888888888888888888776543211100 0000 0011111112234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (625)
Q Consensus 305 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (625)
.++.++...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus 72 ~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 72 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666655554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.29 E-value=3.4e-06 Score=63.81 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 368 SQSLNNLGVVYTVQG---KMDAAAEMIEKAIAANPTYA-EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 368 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
..+.+++|+++.+.. +.++|+.+++.+++.+|.+. +.++.||..|.++|++++|..+++++++++|++..+..-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 678888888888664 45688888888888888664 788899999999999999999999999999998877543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.27 E-value=8.7e-06 Score=64.55 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHH
Q 006937 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGSIS 419 (625)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ 419 (625)
.+.++|+.+|+++.+. .++.+.+.+|.+|.. ..++++|+++|+++.+. .++.+.+.||.+|.. ..+..
T Consensus 37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~ 112 (133)
T d1klxa_ 37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK 112 (133)
T ss_dssp SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence 4555666666665543 455566666666554 34566666666666553 345566666666655 34666
Q ss_pred HHHHHHHHHHhc
Q 006937 420 LAIDAYEQCLKI 431 (625)
Q Consensus 420 ~A~~~~~~al~~ 431 (625)
+|+.+|+++.+.
T Consensus 113 ~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 113 QAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 666666666654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=7.2e-06 Score=61.98 Aligned_cols=74 Identities=12% Similarity=0.031 Sum_probs=44.4
Q ss_pred HHHHHhHHHHHHHh---cCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 006937 82 VEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (625)
Q Consensus 82 ~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (625)
+...+..|.++.+. .+.++|+..++.+++.+|.+. +.++.+|..|.+.|+|++|..+++++++++|++..+...
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 45566666666544 234456666666666665443 566666666666666666666666666666666655443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.16 E-value=2.3e-05 Score=61.94 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVE 355 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~ 355 (625)
.++++|+.+|+++.+.. ++.+.+.++. ....+.++|+.+++++.+. .++.+.+.+|.+|.. ..++++|++
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence 47899999999998765 4455666664 4567899999999999875 678999999999987 568999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 006937 356 CYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANP 399 (625)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 399 (625)
+|+++.+. .++.+.+.||.+|.. ..+.++|+.+|+++.+...
T Consensus 81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99999875 678899999999987 5689999999999988654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=0.028 Score=54.05 Aligned_cols=121 Identities=7% Similarity=-0.090 Sum_probs=64.9
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHH--hcCHHHHHHHHHHHHhcCCCcHHHHHHH---
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM--QNMGRLAFDSFSEAVKLDPQNACAHTHC--- 122 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l--- 122 (625)
-+..+..|...+..|++.++..+..++ +..|--+ +...-..... ..... .+...++.+|+.+......
T Consensus 6 ~r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~p--Yl~~~~l~~~~~~~~~~----~i~~Fl~~~p~~P~~~~lr~~~ 78 (450)
T d1qsaa1 6 QRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYP--YLEYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSRF 78 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHH--HHHHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhhh-cCCCCHH--HHHHHHHHhccccCCHH----HHHHHHHHCCCChhHHHHHHHH
Confidence 356778888899999999888777764 4344222 2222222222 22322 3455566677776543222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
-..+...+++...+..+ ...|.+... -+..+.+....|+..+|...+..+...
T Consensus 79 l~~L~~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 79 VNELARREDWRGLLAFS----PEKPGTTEA-------QCNYYYAKWNTGQSEEAWQGAKELWLT 131 (450)
T ss_dssp HHHHHHTTCHHHHHHHC----CSCCSSHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHhccCHHHHHHhc----cCCCCCHHH-------HHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 23445556665543322 234444443 233445556667777777666555443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.043 Score=52.71 Aligned_cols=338 Identities=10% Similarity=-0.110 Sum_probs=156.3
Q ss_pred HHHHHcCCCCHHHHHhH---HHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 72 EIVLEKDSGNVEAHIGK---GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148 (625)
Q Consensus 72 ~~~l~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 148 (625)
...++.+|+.+...... -..+...+++++.+..+ ...|.+......++.+....|+..+|...+..+......
T Consensus 59 ~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~ 134 (450)
T d1qsaa1 59 TNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS 134 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Confidence 44556677776543332 23445556665544333 345667777777777788888888888777777655444
Q ss_pred CHHHHHHHHHHH-----------HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 149 YKPAAECLAIVL-----------TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (625)
Q Consensus 149 ~~~~~~~~a~~~-----------~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 217 (625)
.+.....+-..+ ..........|++..|...+..+ .++.......+..+... ..... ..
T Consensus 135 ~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l---~~~~~~~~~a~~~l~~~---p~~~~----~~ 204 (450)
T d1qsaa1 135 QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM---PADYQTIASAIISLANN---PNTVL----TF 204 (450)
T ss_dssp CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC---CGGGHHHHHHHHHHHHC---GGGHH----HH
T ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhC---ChhHHHHHHHHHHHHhC---hHhHH----HH
Confidence 333222111111 12233344445555444443211 11111110000011100 00000 01
Q ss_pred HHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 218 ALERPMYAEA--YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 218 l~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
....+.+... ....+..-....+.+.|...+.......+......... ...++......+..+.+...+......
T Consensus 205 ~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~a~~~~~~~~~~ 281 (450)
T d1qsaa1 205 ARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQEL---RDIVAWRLMGNDVTDEQAKWRDDAIMR 281 (450)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHTSCSTTCCHHHHHHHHHHHHT
T ss_pred HhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHH---HHHHHHHHHHcCchHHHHHHHHhhccc
Confidence 1111111111 11122222223344445554444443333322222111 111222222233344444444443333
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------------
Q 006937 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------------ 363 (625)
Q Consensus 296 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------ 363 (625)
..+.......+ ......+++..+...+...-..........+-+|..+...|+.++|..+|..+...
T Consensus 282 ~~~~~~~~w~~-~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~L 360 (450)
T d1qsaa1 282 SQSTSLIERRV-RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRI 360 (450)
T ss_dssp CCCHHHHHHHH-HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHT
T ss_pred ccchHHHHHHH-HHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHc
Confidence 22222222122 22333445554444444332222223444455555555555555555555544331
Q ss_pred -------------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 364 -------------KPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 364 -------------~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
.+.. ...-...+..+...|+..+|...+..++... +..-...++.+..+.|.++.|+....+
T Consensus 361 g~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 361 GEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (450)
T ss_dssp TCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 0111 1123456788899999999999998887543 466777889999999999999988877
Q ss_pred HH
Q 006937 428 CL 429 (625)
Q Consensus 428 al 429 (625)
+-
T Consensus 439 ~~ 440 (450)
T d1qsaa1 439 GK 440 (450)
T ss_dssp TT
T ss_pred HH
Confidence 63
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.39 E-value=0.037 Score=50.17 Aligned_cols=271 Identities=14% Similarity=0.115 Sum_probs=127.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 006937 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (625)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 199 (625)
...|..+.+.|.++.|...|... .+ +..+..++...++++.|.+.+.+. ++...|..+..
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~----~d-----------~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~ 77 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNV----SN-----------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCF 77 (336)
T ss_dssp -----------CTTTHHHHHHHT----TC-----------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC----CC-----------HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHH
Confidence 34555566666666666666532 11 333344445556666666665543 34556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhc
Q 006937 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 200 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (625)
.+.......-|.-. .. ....+++-...+...|...|.+++.+.+++.++...+.+...+..++.++...
T Consensus 78 ~l~~~~e~~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~------- 146 (336)
T d1b89a_ 78 ACVDGKEFRLAQMC-GL---HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF------- 146 (336)
T ss_dssp HHHHTTCHHHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-------
T ss_pred HHHhCcHHHHHHHH-HH---HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh-------
Confidence 66665554433111 00 01123444445556666667777777777766666555555544444444332
Q ss_pred CCHHHHHHHHHHHH-hhCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 006937 280 GDINQGVAYYKKAL-YYNWH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351 (625)
Q Consensus 280 ~~~~~A~~~~~~~l-~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 351 (625)
+.++-.+.++..- ..++. ....|-.+..+|.+.|++++|+..+-.- |.+..-....-.++.+..+.+
T Consensus 147 -~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~----~~~~~~~~~f~e~~~k~~N~e 221 (336)
T d1b89a_ 147 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH----PTDAWKEGQFKDIITKVANVE 221 (336)
T ss_dssp -CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS----TTTTCCHHHHHHHHHHCSSTH
T ss_pred -ChHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc----chhhhhHHHHHHHHHccCChH
Confidence 2233333322210 00000 0112445667777888888776655331 111111122223334444444
Q ss_pred HHHHHHHHHHccCCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006937 352 KAVECYQMALSIKPNFSQS----------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421 (625)
Q Consensus 352 ~A~~~~~~al~~~~~~~~~----------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 421 (625)
..-+...-.++..|....- ...+.....+.++..-...+++.... .++..+...++.+|...++++.
T Consensus 222 ~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~--~n~~~vn~al~~lyie~~d~~~- 298 (336)
T d1b89a_ 222 LYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQA- 298 (336)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHH-
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH--cChHHHHHHHHHHHhCcchhHH-
Confidence 4333333333333332110 11233334455566666666665443 3345788889999999998643
Q ss_pred HHHHHHHHhcC
Q 006937 422 IDAYEQCLKID 432 (625)
Q Consensus 422 ~~~~~~al~~~ 432 (625)
.++.++..
T Consensus 299 ---l~~~i~~~ 306 (336)
T d1b89a_ 299 ---LRTSIDAY 306 (336)
T ss_dssp ---HHHHHHHC
T ss_pred ---HHHHHHHh
Confidence 44555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.24 E-value=0.068 Score=48.40 Aligned_cols=280 Identities=11% Similarity=0.029 Sum_probs=142.3
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (625)
..-..|..+.+.|.|+.|..+|... .-+-.+..++...++++.|.+.+.+. ++...|..+...+...
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 82 (336)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhC
Confidence 3456788888888888888888753 22455567778888888888887765 4667787777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 006937 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (625)
Q Consensus 130 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~ 209 (625)
....-|..+ ...+. .+++. +......+...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++
T Consensus 83 ~e~~la~i~-~~~~~---~~~d~-------l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~k 150 (336)
T d1b89a_ 83 KEFRLAQMC-GLHIV---VHADE-------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQK 150 (336)
T ss_dssp TCHHHHHHT-TTTTT---TCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHH
T ss_pred cHHHHHHHH-HHHhh---cCHHH-------HHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHH
Confidence 665543221 11111 12221 2334455566788888888888887777777777777777776543 344
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHH
Q 006937 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (625)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (625)
-++.++..- +.-++ -....++.+.+-+++++-.|.+ .+++++|+...
T Consensus 151 l~e~l~~~s--~~y~~---~k~~~~c~~~~l~~elv~Ly~~----------------------------~~~~~~A~~~~ 197 (336)
T d1b89a_ 151 MREHLELFW--SRVNI---PKVLRAAEQAHLWAELVFLYDK----------------------------YEEYDNAIITM 197 (336)
T ss_dssp HHHHHHHHS--TTSCH---HHHHHHHHTTTCHHHHHHHHHH----------------------------TTCHHHHHHHH
T ss_pred HHHHHHhcc--ccCCH---HHHHHHHHHcCChHHHHHHHHh----------------------------cCCHHHHHHHH
Confidence 444433321 11111 1122344445555555544433 33444444332
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHH
Q 006937 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA----------CNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 290 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
-. +|.+..-....-.++.+..+.+..-+...-.++.+|..... ...+.....+.++..-...+++.
T Consensus 198 i~----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~ 273 (336)
T d1b89a_ 198 MN----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS 273 (336)
T ss_dssp HH----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred HH----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHH
Confidence 21 11111111111222333333333333333333333322111 11233444556666666777766
Q ss_pred HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 360 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
... .++..+...++.+|...++++. +++.++.
T Consensus 274 v~~--~n~~~vn~al~~lyie~~d~~~----l~~~i~~ 305 (336)
T d1b89a_ 274 VQN--HNNKSVNESLNNLFITEEDYQA----LRTSIDA 305 (336)
T ss_dssp HHT--TCCHHHHHHHHHHHHHTTCHHH----HHHHHHH
T ss_pred HHH--cChHHHHHHHHHHHhCcchhHH----HHHHHHH
Confidence 544 3456789999999999999754 4444444
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=89.87 E-value=4.6 Score=33.53 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 194 YYNLGVVYSELMQYDTALGCYEKAALE 220 (625)
Q Consensus 194 ~~~la~~~~~~~~~~~A~~~~~~al~~ 220 (625)
+..+|.+..+.++|++.+.+.+++++.
T Consensus 7 lv~~AklaeqaeRy~dm~~~mk~v~~~ 33 (236)
T d1o9da_ 7 NVYMAKLAEQAERYEEMVEFMEKVSNS 33 (236)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344444444455555555555554443
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.73 E-value=6.5 Score=32.47 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=46.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CHHHHHhHHHHHH-HhcCHHHHHHHHHHHHhc
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKL 111 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 111 (625)
-+.++.+|...-+.++|++.+.+.+++++.+|. +.+-...+..+|- ..|....+...+....+.
T Consensus 3 re~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k 68 (230)
T d2o02a1 3 KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQK 68 (230)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 466889999999999999999999999998876 3445555555553 346666666666654443
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.98 E-value=12 Score=30.72 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 006937 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMY-AEAYCNMGVIYKN-RGDLESAIACYER 250 (625)
Q Consensus 193 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~ 250 (625)
-+..+|.+..+.++|++.+.+.+++++.++.- .+-...+..+|-. .|....+...+..
T Consensus 5 ~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~ 64 (230)
T d2o02a1 5 ELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSS 64 (230)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34556666666677777777776666665542 3333334444332 3444444444443
|