Citrus Sinensis ID: 006940

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620----
Protein Sequence
MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDIQLARHYNHHGNARTAAENGPSLLS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEEccccccccccccEEEEEccEEEEEEEcccccccccEEEEEEEEEccccEEEEEEEccccccEEEEEEcEEccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccHHHHHHHHcccccccccEEEEccccccccEEEEEEEHHHcccccccccEEEEEEEccccccccccccccccccEEEEEEEEEEEEcccEEEEEEcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEEccccccEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccEEEccccHccccccccccHHHccccccEEEccccccccccEEEEEcccccEEEEEEEEEEccccccccccEEEEEEcccEEEEEEEccccccccEEEEEEEEcccccEEEEEEEccccccEEEEEEEcccccccccccccccccEEEEEEEEEEccccccccEEEccccccccccEEEccccccccccccEEEEEEccccccccccccHHHHHHccccccccccEEEEEcccccccEEEEEEEHHHHHHcccccEEEEEEEEcccEcccccccHHcccccEEEEEcccccccccEEEEEEEccccccccEEEHEEEEEEEEccccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEcccccccccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHHccccccEEEEcccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHccccccccHHHHHHccccHHHHHHccccccccc
Coil and Loop (DISEMBL)
MLRFHFLWLLVFCSAlnsssarhapfamriscgarqnihspptntlwfkdfaytggipanatrpsfitpplktlryfplsegpencyiinrvpkghynvRIFFGLvtltsfdheplfdisvegtqiyslksgwsdhdDRAFAEALVFLRDGTvsicfhstghgdpailSLEIlqvddkayyfgqgwgeGLILRTAtrlscgngkpkfdvdysgdhwggdrfwnpilsfgqnadqrrSTESSIKQaskapnfypealYQTAlvstdsqpdlqytmdvdpnrnySIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAvngrtltvtlhpkggsHAIINAIEVFEIIAVESKTLPEEVRALQVLKnsldlphrfgwngdpcvpqqhpwsgadcqfdrtshkwvidglgldnqglrgflpngiskLRHLQSInlsgnsirgaipsslgtiASLEVLDLSynffngsipesLGQLTALRRLNLngntlsgrvpaalggrllhrasfnftdnaglcgipglracgphlstsakigiGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDIQLARHYnhhgnartaaengpslls
Flexible Loop (DISEMBL)
MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPanatrpsfitppLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDIQLARHYNHHGnartaaengpslls
Low Complexity Region (SEG)
MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTSAKigigfgvlgliflliiCSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDIQLARHYNHHGNARTAAENGPSLLS
Disordered region (IsUnstruct)
**RFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFG*********************FYPEALYQTALVST****DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDIQLARHY******************
Disordered Region (DISOPRED)
*LRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANA*****ITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTI*GVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAG*********************IGFGVLGLIFLLIICSMVWWK****************************IQLARHYNHHGNAR*AA********
Disordered Region (DISEMBL)
MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQN**************SKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDIQLARHYNHHGNA************
Disordered Region (DISPRO)
MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNI**********************DIQLAR*Y***GNARTAAENGPSLLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDIQLARHYNHHGNARTAAENGPSLLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	624	2.2.26 [Sep-21-2011]
Q9ZQQ7	886	Putative leucine-rich rep	no	no	0.724	0.510	0.297	2e-36
Q9LIG2	899	Receptor-like protein kin	no	no	0.746	0.518	0.277	3e-35
Q9SNA3	889	Putative receptor-like pr	no	no	0.701	0.492	0.271	1e-33
Q9ZQR3	868	Leucine-rich repeat recep	no	no	0.700	0.503	0.278	1e-33
Q9FN94	868	Receptor-like protein kin	no	no	0.697	0.501	0.285	1e-32
C0LGG3	885	Probable LRR receptor-lik	no	no	0.732	0.516	0.256	1e-31
O81069	884	Probable leucine-rich rep	no	no	0.631	0.445	0.269	7e-31
Q9FZB1	872	Probable LRR receptor-lik	no	no	0.626	0.448	0.287	5e-30
C0LGD9	871	Probable LRR receptor-lik	no	no	0.841	0.602	0.25	6e-30
C0LGD6	852	Probable LRR receptor-lik	no	no	0.836	0.612	0.268	2e-29

>sp|Q9ZQQ7|Y2144_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 OS=Arabidopsis thaliana GN=At2g14440 PE=1 SV=1

 Score =  154 bits (389), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 145/487 (29%), Positives = 211/487 (43%), Gaps = 35/487 (7%)

Query: 40  SPPTNTLWFKDFAY-----TGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPK 94
            P TN  +  D  +     TG I  N +   F + P K LRYFP  EG  NCY ++    
Sbjct: 45  EPLTNLTYISDVNFVRGGKTGNI-KNNSDIDFTSRPYKVLRYFP--EGIRNCYSLSVKQG 101

Query: 95  GHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVS 154
             Y +R  F        +  P FD+ +      S+     D  D    E +   R   + 
Sbjct: 102 TKYLIRTLFFYGNYDGLNTSPRFDLFLGPNIWTSVDVQKVDGGDGVIEEIIHVTRCNILD 161

Query: 155 ICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGD 214
           IC   TG   P I ++E+  +    Y    G  + ++    T     +GK   +V Y  D
Sbjct: 162 ICLVKTGTTTPMISAIELRPLRYDTYTARTGSLKKILHFYFT----NSGK---EVRYPED 214

Query: 215 HWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYT- 273
            +  DR W P     Q    + +T  ++   S   N  P+ + +TA + T+    L +T 
Sbjct: 215 VY--DRVWIP---HSQPEWTQINTTRNVSGFSDGYN-PPQDVIKTASIPTNVSEPLTFTW 268

Query: 274 MDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNT 333
           M    +     +L+FAEI   +     R F IL+NG      V  +     ++ A  L T
Sbjct: 269 MSESSDDETYAYLYFAEIQQ-LKANETRQFKILVNG------VYYIDYIPRKFEAETLIT 321

Query: 334 TVAVN--GRTLTVTLH--PKGGSHAIINAIEVFEIIAV-ESKTLPEEVRALQVLKNSLDL 388
             A+   G    V L   PK      +NAIE+F +I   +S T  +EV A++ ++++  +
Sbjct: 322 PAALKCGGGVCRVQLSKTPKSTLPPQMNAIEIFSVIQFPQSDTNTDEVIAIKNIQSTYKV 381

Query: 389 PHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQS 448
             R  W GDPCVP Q  W G  C     S    I  L L + GL G +   I  L  L+ 
Sbjct: 382 -SRISWQGDPCVPIQFSWMGVSCNVIDISTPPRIISLDLSSSGLTGVITPSIQNLTMLRE 440

Query: 449 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRV 508
           ++LS N++ G IP SL  +  L  LDLS N   G +PE L  +  L  ++L GN L G V
Sbjct: 441 LDLSNNNLTGVIPPSLQNLTMLRELDLSNNNLTGEVPEFLATIKPLLVIHLRGNNLRGSV 500

Query: 509 PAALGGR 515
           P AL  R
Sbjct: 501 PQALQDR 507

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LIG2|RLK6_ARATH Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1

 Score =  150 bits (378), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 145/523 (27%), Positives = 234/523 (44%), Gaps = 57/523 (10%)

Query: 2   LRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQN---IHSPPTNTLWFKD--FAYTG- 55
           +R   L  + F + L+   A+     + + CG+  N    + P T   +  D  F  +G 
Sbjct: 8   IRLCALIFISFYALLHLVEAQDQKGFISLDCGSLPNEPPYNDPSTGLTYSTDDGFVQSGK 67

Query: 56  -GIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHE 114
            G    A    F  P LK LRYFP  +G  NCY +N     +Y ++  F        ++ 
Sbjct: 68  TGRIQKAFESIFSKPSLK-LRYFP--DGFRNCYTLNVTQDTNYLIKAVFVYGNYDGLNNP 124

Query: 115 PLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQ 174
           P FD+ + G  ++ +    +   +    E +      ++ +C   TG   P I +LE+  
Sbjct: 125 PSFDLYL-GPNLW-VTVDMNGRTNGTIQEIIHKTISKSLQVCLVKTGTSSPMINTLELRP 182

Query: 175 VDDKAYYFGQGWGEGLILRTATRLS-CGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNAD 233
           + +  Y    G      L+   R    G+G+   ++ Y  D    DR W P        D
Sbjct: 183 LKNNTYNTQSG-----SLKYFFRYYFSGSGQ---NIRYPDDV--NDRKWYPFF------D 226

Query: 234 QRRSTESSIKQASKAPNFY--PEALYQTAL--VSTDSQPDLQYTMDVDPNRNYSIWLHFA 289
            +  TE +      + N Y  PE +  +A   +ST    +  + +     + Y +++HFA
Sbjct: 227 AKEWTELTTNLNINSSNGYAPPEVVMASASTPISTFGTWNFSWLLPSSTTQFY-VYMHFA 285

Query: 290 EIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGR--------- 340
           EI  T+  +  R F + +NG +A++          RY+   L T                
Sbjct: 286 EIQ-TLRSLDTREFKVTLNGKLAYE----------RYSPKTLATETIFYSTPQQCEDGTC 334

Query: 341 TLTVTLHPKGGSHAIINAIEVFEIIAV-ESKTLPEEVRALQVLKNSLDLPHRFGWNGDPC 399
            L +T  PK     ++NA+EVF +I   + +T P++V A++ ++++  L  +  W GDPC
Sbjct: 335 LLELTKTPKSTLPPLMNALEVFTVIDFPQMETNPDDVAAIKSIQSTYGL-SKISWQGDPC 393

Query: 400 VPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA 459
           VP+Q  W G +C     S   ++  L L +  L G +  GI  L HLQ ++LS N++ G 
Sbjct: 394 VPKQFLWEGLNCNNLDNSTPPIVTSLNLSSSHLTGIIAQGIQNLTHLQELDLSNNNLTGG 453

Query: 460 IPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           IP  L  I SL V++LS N FNGSIP+ L Q   L +L L GN
Sbjct: 454 IPEFLADIKSLLVINLSGNNFNGSIPQILLQKKGL-KLILEGN 495

Probable receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SNA3|Y3463_ARATH Putative receptor-like protein kinase At3g46340 OS=Arabidopsis thaliana GN=At3g46340 PE=3 SV=1

 Score =  145 bits (365), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 128/472 (27%), Positives = 210/472 (44%), Gaps = 34/472 (7%)

Query: 28  MRISCGARQNIHSP---PTNTLWFK-DFAYTGGIPANATRPSFITPPLK---TLRYFPLS 80
           + + CG   N  SP   P   L F  D ++           SF    LK   TLRYFP  
Sbjct: 33  ISLDCGLPPNEVSPYIEPFTGLRFSSDSSFIQSGKIGKVDKSFEATTLKSYMTLRYFP-- 90

Query: 81  EGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRA 140
           +G  NCY +       Y +R           +  P FD+ +      +L +G  ++    
Sbjct: 91  DGKRNCYNLIVKQGKTYMIRATALYGNYDGLNISPKFDLYIGANFWTTLDAG--EYLSGV 148

Query: 141 FAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSC 200
             E     R  ++ +C   T    P +  LE+  +D+ +Y  G G      L+T  R   
Sbjct: 149 VEEVNYIPRSNSLDVCLVKTDTSTPFLSLLELRPLDNDSYLTGSGS-----LKTFRRYYL 203

Query: 201 GNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTA 260
            N +    + Y  D    DR W P         + +   +++K  +      P+ +  TA
Sbjct: 204 SNSESV--IAYPED--VKDRIWEPTFD-----SEWKQIWTTLKPNNSNGYLVPKNVLMTA 254

Query: 261 LVSTDSQPDLQYTMDVD-PNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVV 319
            +  +     ++T ++D P     ++LHF+E+  ++     R FDIL +G++A++     
Sbjct: 255 AIPANDSAPFRFTEELDSPTDELYVYLHFSEV-QSLQANESREFDILWSGEVAYEAFIPE 313

Query: 320 KMSGDRYTALVLNTTVAVNGRTLTVTL-HPKGGSHA-IINAIEVFEIIAV-ESKTLPEEV 376
            ++    T +  NT V   G    + L   K  +H  +INAIE + ++   + +T   +V
Sbjct: 314 YLN---ITTIQTNTPVTCPGGKCNLELKRTKNSTHPPLINAIEFYTVVNFPQLETNETDV 370

Query: 377 RALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFL 436
            A++ +K + +L +R  W GDPCVPQ+  W G DC          I  L L + GL G +
Sbjct: 371 VAIKDIKATYEL-NRITWQGDPCVPQKFIWEGLDCNSKDALTLPRITSLNLSSTGLTGNI 429

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
             GI  L HL  ++LS N++ G +P  L ++ SL  ++LS N  NGSIP++L
Sbjct: 430 AAGIQNLTHLDKLDLSNNNLTGGVPEFLASMKSLSFINLSKNNLNGSIPQAL 481

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZQR3|Y2451_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 OS=Arabidopsis thaliana GN=At2g14510 PE=2 SV=1

 Score =  145 bits (365), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 209/474 (44%), Gaps = 37/474 (7%)

Query: 28  MRISCG--ARQNIHSPPTNTLWFKDFAY-----TGGIPANATRPSFITPPLKTLRYFPLS 80
           + + CG  ++++   P +N  +  D  +     TG I  N +R +FI  P K LRYFP  
Sbjct: 30  ISLDCGLPSKESYIEPSSNLTFISDVNFIRGGKTGNI-QNNSRTNFIFKPFKVLRYFP-- 86

Query: 81  EGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRA 140
           +G  NCY ++      Y +R  F        +  P FD+ +      S+    +D  D  
Sbjct: 87  DGIRNCYSLSVKQGTKYLIRTLFYYGNYDGLNTSPRFDLFLGPNIWTSVDVLIADVGDGV 146

Query: 141 FAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSC 200
             E +   R   + IC   TG   P I ++E+  +    Y    G      L++      
Sbjct: 147 VEEIVHVTRSNILDICLVKTGTSTPMISAIELRPLRYDTYTARTGS-----LKSMAHFYF 201

Query: 201 GNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTA 260
            N      + Y  D +  DR W P   + Q    + +T  ++   S   N  P+ + QTA
Sbjct: 202 TNSDEA--IRYPEDVY--DRVWMP---YSQPEWTQINTTRNVSGFSDGYN-PPQGVIQTA 253

Query: 261 LVSTDSQPDLQYTMDVDPNRNYSI-WLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVV 319
            + T+    L +T +++ + + +  +L FAEI         R F IL NG      VD +
Sbjct: 254 SIPTNGSEPLTFTWNLESSDDETYAYLFFAEIQQLKVN-ETREFKILANG------VDYI 306

Query: 320 KMSGDRYTALVLN--TTVAVNGRTLTVTLH--PKGGSHAIINAIEVFEIIAV-ESKTLPE 374
             +  ++ A  L+    +   G    V L   PK     ++NAIE+F +I   +S T  +
Sbjct: 307 DYTPWKFEARTLSNPAPLKCEGGVCRVQLSKTPKSTLPPLMNAIEIFSVIQFPQSDTNTD 366

Query: 375 EVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRG 434
           EV A++ ++++  L  R  W GDPCVP+Q  W G  C     S    I  L L   GL G
Sbjct: 367 EVIAIKKIQSTYQL-SRISWQGDPCVPKQFSWMGVSCNVIDISTPPRIISLDLSLSGLTG 425

Query: 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
            +   I  L  L+ ++LS N++ G +P  L TI  L V+ L  N   GS+P++L
Sbjct: 426 VISPSIQNLTMLRELDLSNNNLTGEVPEFLATIKPLLVIHLRGNNLRGSVPQAL 479

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN94|RLK7_ARATH Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1

 Score =  141 bits (356), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 146/512 (28%), Positives = 226/512 (44%), Gaps = 77/512 (15%)

Query: 28  MRISCGARQNIHSPPTNT----LWFKDFAY-----TGGIPANATRPSFITPPLKTLRYFP 78
           + + CG   N  SP T T    L+  D  +     TG + AN  + S    P +TLRYFP
Sbjct: 29  ISLDCGLPANETSPYTETQTGLLFSSDATFIQSGKTGRVQAN--QESKFLKPYRTLRYFP 86

Query: 79  LSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDD 138
             EG  NCY ++   +  Y +   F        +  P+FD+ + G  +++ K    D + 
Sbjct: 87  --EGVRNCYNLSVFKERKYLIAASFLYGNYDGHNIAPVFDLYL-GPNLWA-KIDLQDVNG 142

Query: 139 RAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRL 198
               E L      ++ IC   TG   P I SLE+  +   +Y    G      L+T  RL
Sbjct: 143 TG-EEILHIPTSNSLQICLVQTGETTPLISSLELRPMRTGSYTTVSG-----SLKTYRRL 196

Query: 199 SCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQ 258
                  +  + YS D +  DR W P   F     Q  +    I      P   PE   +
Sbjct: 197 YFKKSGSR--LRYSKDVY--DRSWFP--RFMDEWTQISTALGVINTNIYQP---PEDALK 247

Query: 259 TALVSTDSQPDLQYTMDVDP-NRNYSIWLHFAEIDNTITGVGQRVFDILING-DIAFQGV 316
            A   TD+   L +  + +  +  Y  + H+AEI + +     R F+IL+NG +++  G 
Sbjct: 248 NAATPTDASAPLTFKWNSEKLDVQYYFYAHYAEIQD-LQANDTREFNILLNGQNLSVTGP 306

Query: 317 DVV-KMSGDRYTALVLNTTVAVNG--------RTLTVTLHPKGGSHAIINAIEVFEIIAV 367
           +V  K+S   + +   ++ ++ NG        RT   TL P      ++NA+EV+ +I  
Sbjct: 307 EVPDKLSIKTFQS---SSPISCNGWACNFQLIRTKRSTLPP------LLNALEVYTVIQF 357

Query: 368 -ESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLG 426
             S+T   +V A++ +  S  L  R  W GDPC PQQ  W   DC               
Sbjct: 358 PRSETDESDVVAMKNISASYGL-SRINWQGDPCFPQQLRWDALDCT-------------- 402

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
                        IS+   + S+NLS + + G I +++ +I  LE LDLSYN   G +PE
Sbjct: 403 ----------NRNISQPPRITSLNLSSSRLNGTIAAAIQSITQLETLDLSYNNLTGEVPE 452

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518
            LG++ +L  +NL+GN L+G +P AL  + L 
Sbjct: 453 FLGKMKSLSVINLSGNNLNGSIPQALRKKRLK 484

Probable receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGG3|Y5182_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 135/527 (25%), Positives = 226/527 (42%), Gaps = 70/527 (13%)

Query: 2   LRFHFLWLLVFCSALNSSSARHAPFAMRISCGAR--QNIHSPPTNTLWFK---DFAYTG- 55
           +  HF+++  +    +   A++    + + CG    ++ +  P   L +    D   +G 
Sbjct: 1   MERHFVFIATYLLIFHLVQAQNQTGFISVDCGLSLLESPYDAPQTGLTYTSDADLVASGK 60

Query: 56  -GIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHE 114
            G  A    P  +  P  TLRYFP  EG  NCY +N     +Y ++  F        +  
Sbjct: 61  TGRLAKEFEP-LVDKPTLTLRYFP--EGVRNCYNLNVTSDTNYLIKATFVYGNYDGLNVG 117

Query: 115 PLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQ 174
           P F++ + G  +++  S      +    E ++  R  ++ +C   TG   P I  LE+  
Sbjct: 118 PNFNLYL-GPNLWTTVSS-----NDTIEEIILVTRSNSLQVCLVKTGISIPFINMLELRP 171

Query: 175 VDDKAYYFGQG----WGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQ 230
           +    Y    G       G I  ++TR+       +F  D        DR W P+     
Sbjct: 172 MKKNMYVTQSGSLKYLFRGYISNSSTRI-------RFPDDVY------DRKWYPLFD--- 215

Query: 231 NADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDP-NRNYSIWLHFA 289
             D      +++K  +      P+++   A     +   L  T  V+P    +  ++H A
Sbjct: 216 --DSWTQVTTNLKVNTSITYELPQSVMAKAATPIKANDTLNITWTVEPPTTQFYSYVHIA 273

Query: 290 EIDNTITGVGQRVFDILINGDIAF--------QGVDVVKMS-----GDRYTALVLNTTVA 336
           EI   +     R F++ +NG+  F        +   +V +S     G R    V+     
Sbjct: 274 EIQ-ALRANETREFNVTLNGEYTFGPFSPIPLKTASIVDLSPGQCDGGRCILQVV----- 327

Query: 337 VNGRTLTVTLHPKGGSHAIINAIEVFEIIAV-ESKTLPEEVRALQVLKNSLDLPHRFGWN 395
              +TL  TL P      ++NAIE F +I   + +T   +V  ++ ++ +  L  R  W 
Sbjct: 328 ---KTLKSTLPP------LLNAIEAFTVIDFPQMETNENDVAGIKNVQGTYGL-SRISWQ 377

Query: 396 GDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS 455
           GDPCVP+Q  W G +C+    S   +I  L L + GL G +   I  L HLQ ++LS N+
Sbjct: 378 GDPCVPKQLLWDGLNCKNSDISTPPIITSLDLSSSGLTGIITQAIKNLTHLQILDLSDNN 437

Query: 456 IRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           + G +P  L  I SL V++LS N  +GS+P SL Q   + +LN+ GN
Sbjct: 438 LTGEVPEFLADIKSLLVINLSGNNLSGSVPPSLLQKKGM-KLNVEGN 483

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O81069|Y2899_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1

 Score =  135 bits (341), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 186/419 (44%), Gaps = 25/419 (5%)

Query: 73  TLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSG 132
           TLRYFP  EG  NCY ++      Y + + F        + +P FDI +   +   +   
Sbjct: 77  TLRYFP--EGKRNCYSLDVKRGTTYLIVVSFVYGNYDGLNRDPNFDIHLGPNKWKRIDLD 134

Query: 133 WSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLIL 192
                 R   E +   R  ++ IC   TG   P I ++EI  + +  Y    G    L++
Sbjct: 135 GEKEGTRE--EIIHKARSNSLDICLVKTGETLPIISAIEIRPLRNNTYVTQSG---SLMM 189

Query: 193 RTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFY 252
                LS  +   ++  D        DR W+P   F  ++    +T+ +I  ++      
Sbjct: 190 SFRVYLSNSDASIRYADDVH------DRIWSP---FNGSSHTHITTDLNINNSNAYE--I 238

Query: 253 PEALYQTALVSTDSQPDLQYTMDVDP-NRNYSIWLHFAEIDNTITGVGQRVFDILINGDI 311
           P+ + QTA +  ++   L  T D  P N    +++HFAEI  T+     R FD+++ G+ 
Sbjct: 239 PKNILQTAAIPRNASAPLIITWDPLPINAEVYLYMHFAEI-QTLEANETRQFDVILRGNF 297

Query: 312 AFQGVDVVKMSG-DRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVES- 369
              G    K+     YT   +       G  L +   P      +INAIE + +I     
Sbjct: 298 NHSGFSPTKLKVFTLYTEEPMK--CGSEGCYLQLVKTPNSTLPPLINAIEAYSVIEFSQL 355

Query: 370 KTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDN 429
           +T   +V A++ +KN+  L ++  W GDPC+PQ   W    C +   S    I  L L  
Sbjct: 356 ETSLSDVDAIKNIKNTYKL-NKITWQGDPCLPQDLSWESIRCTYVDGSTSPTIISLDLSK 414

Query: 430 QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
            GL G +P  +     LQ ++LS NS+ G +P  L  + +L +++LS N  +GS+P++L
Sbjct: 415 SGLNGSIPQILQNFTQLQELDLSNNSLTGPVPIFLANMKTLSLINLSGNNLSGSVPQAL 473

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZB1|Y5188_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1

 Score =  133 bits (334), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 200/428 (46%), Gaps = 37/428 (8%)

Query: 73  TLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSG 132
           T+R FP  EG  NCY  N   K  Y +R  F           P FDI +  ++  S+K  
Sbjct: 81  TVRSFP--EGERNCYNFNLTAKSRYLIRATFTYGNYDGLRQVPKFDIHIGPSKWTSVK-- 136

Query: 133 WSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQG--WGEGL 190
                + A  E +  L    + IC   TG G P I SLE+  +++  Y    G   G   
Sbjct: 137 LDGVGNGAVLEMIHVLTQDRLQICLVKTGKGIPFISSLELRPLNNNTYLTQSGSLIGFAR 196

Query: 191 ILRTATRLSCGNGKPKFDVDYSGD-HWGGDRFWNPILSFGQNADQRRSTESSIKQASKAP 249
           +  +AT        P F + Y  D H   DR W  +  FG      +S  + +   +  P
Sbjct: 197 VFFSAT--------PTF-IRYDEDIH---DRVW--VRQFGNGL---KSISTDLLVDTSNP 239

Query: 250 NFYPEALYQTALV-STDSQPDL-QYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILI 307
              P+A+ +TA V S  SQP +  +T+D   +++Y +++HFAEI  T+     R F+I  
Sbjct: 240 YDVPQAVAKTACVPSNASQPLIFDWTLDNITSQSY-VYMHFAEI-QTLKDNDIREFNITY 297

Query: 308 NGDIAFQGV-DVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSH--AIINAIEVFEI 364
           NG    Q V   ++      + L  +  ++    + +++    G S    +IN +E++++
Sbjct: 298 NGG---QNVYSYLRPEKFEISTLFDSKPLSSPDGSFSLSFTKTGNSTLPPLINGLEIYKV 354

Query: 365 I-AVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVID 423
           +  +E +T  +EV A+  +K + DL  +  W GDPC P+ + W G +C +  +    +I 
Sbjct: 355 LDLLELETDQDEVSAMINIKATYDLSKKVSWQGDPCAPKSYQWEGLNCSYPNSDQPRII- 413

Query: 424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-FNG 482
            L L    L G +   ISKL  L  ++LS N + G IP     +  L++++LS N   N 
Sbjct: 414 SLNLAENKLTGTITPEISKLTQLIELDLSKNDLSGEIPEFFADMKLLKLINLSGNLGLNS 473

Query: 483 SIPESLGQ 490
           +IP+S+ Q
Sbjct: 474 TIPDSIQQ 481

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGD9|Y1756_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07560 OS=Arabidopsis thaliana GN=At1g07560 PE=2 SV=1

 Score =  132 bits (333), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 149/596 (25%), Positives = 247/596 (41%), Gaps = 71/596 (11%)

Query: 28  MRISCG--ARQNIHSPPTNTLWFK---DFAYTG--GIPANATRPSFITPPLKTLRYFPLS 80
           + + CG  A ++ ++ P   L F    DF  +G  G   N     +I P    LRYFP  
Sbjct: 31  ISLDCGLQADESPYTEPLTKLTFTSDADFIKSGKSGKIQNVPGMEYIKP-YTVLRYFP-- 87

Query: 81  EGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRA 140
           +G  NCY +  +   +Y +   F      + +  P FD+ + G  I++       + +  
Sbjct: 88  DGVRNCYTLIVIQGTNYLIVAMFTYGNYDNLNTHPKFDLYL-GPNIWT-TVDLQRNVNGT 145

Query: 141 FAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSC 200
            AE +   R  ++ IC   TG   P I +LE+  + +  Y    G      L+T  R+  
Sbjct: 146 RAEIIHIPRSTSLQICLVKTGTTTPLISALELRPLRNNTYIPQSGS-----LKTLFRVHL 200

Query: 201 GNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFY--PEALYQ 258
            + K    V Y  D    DR W+P         + R   +S+   +   N Y  PE +  
Sbjct: 201 TDSKET--VRYPED--VHDRLWSPFF-----MPEWRLLRTSLTVNTSDDNGYDIPEDVVV 251

Query: 259 TALVSTDSQPDLQYTMDVD-PNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVD 317
           TA    +    L  + +++ P+     +LH AEI  ++     R F+I    D+ +  V 
Sbjct: 252 TAATPANVSSPLTISWNLETPDDLVYAYLHVAEI-QSLRENDTREFNISAGQDVNYGPV- 309

Query: 318 VVKMSGDRY-TALVLNTT-VAVNGRT--LTVTLHPKGGSHAIINAIEVFEIIAV-ESKTL 372
               S D +    + NT+ V   G T  L +   PK     ++NAIE F  +   +S+T 
Sbjct: 310 ----SPDEFLVGTLFNTSPVKCEGGTCHLQLIKTPKSTLPPLLNAIEAFITVEFPQSETN 365

Query: 373 PEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGL 432
             +V A++ ++ S  L  R  W GDPCVPQQ  W G  C++                   
Sbjct: 366 ANDVLAIKSIETSYGL-SRISWQGDPCVPQQLLWDGLTCEY------------------- 405

Query: 433 RGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT 492
                  +S    + S++LS + + G I   +  +  L+ LD S N   G +PE L ++ 
Sbjct: 406 -----TNMSTPPRIHSLDLSSSELTGIIVPEIQNLTELKKLDFSNNNLTGGVPEFLAKMK 460

Query: 493 ALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLC--GIPGLRACGPHLSTSAKIG 550
           +L  +NL+GN LSG VP AL  ++ +    N   N  LC       +     L   A + 
Sbjct: 461 SLLVINLSGNNLSGSVPQALLNKVKNGLKLNIQGNPNLCFSSSCNKKKNSIMLPVVASLA 520

Query: 551 IGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDIQLARHY 606
               ++ +I LL +C     KRR +  +    + +     K R   +  + + + +
Sbjct: 521 SLAAIIAMIALLFVC----IKRRSSSRKGPSPSQQSIETIKKRYTYAEVLAMTKKF 572

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGD6|Y1570_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1

 Score =  131 bits (329), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 170/632 (26%), Positives = 268/632 (42%), Gaps = 110/632 (17%)

Query: 1   MLRFHFLWLL-----VFCSALNSSSARHAPFAMRISCG--ARQNIHSPPTNTLWFKD--F 51
           M  F FL+L+       C  ++  +   + F + I CG  +  +     T   +  D  F
Sbjct: 1   MEEFRFLYLIYSAAFALCLVVSVLAQDQSGF-ISIDCGIPSGSSYKDDTTGINYVSDSSF 59

Query: 52  AYTG---GIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVP-KGH-YNVRIFFGLV 106
             TG    IP  A R       L+ LR FP  EG  NCY +  +  KG  Y +R  F   
Sbjct: 60  VETGVSKSIPFTAQRQ------LQNLRSFP--EGSRNCYTLIPIQGKGKKYLIRASFMYG 111

Query: 107 TLTSFDHEPLFDISVEGT--QIYSLKSGWSDHDDRAFAEALVFL-RDGTVSICFHSTGHG 163
                +  P FD+ + G       L +G S       ++ +V+L +   + +C  + G G
Sbjct: 112 NYDGENGSPEFDLFLGGNIWDTVLLSNGSS-----IVSKEVVYLSQSENIFVCLGNKGKG 166

Query: 164 DPAILSLEI--LQVDDKAY-------YFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGD 214
            P I +LE+  L  D+  Y       +F + W     LR+        G P   V Y  D
Sbjct: 167 TPFISTLELRFLGNDNTTYDSPNGALFFSRRWD----LRSLM------GSP---VRYDDD 213

Query: 215 HWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEAL-YQTALVSTDSQPDLQYT 273
            +  DR W P     +N    R   +S+   S   ++   +L   TA+   ++   +  T
Sbjct: 214 VY--DRIWIP-----RNFGYCREINTSLPVTSDNNSYSLSSLVMSTAMTPINTTRPITMT 266

Query: 274 MD-VDPNRNYSIWLHFAEIDNTITGVGQ-RVFDILINGDIAFQGVDVVKMSGDRYTALVL 331
           ++  DPN  Y +++HFAE+++      Q R FDI ING     G     +  + +    L
Sbjct: 267 LENSDPNVRYFVYMHFAEVEDLSLKPNQTREFDISINGVTVAAGFSPKYLQTNTF---FL 323

Query: 332 NTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAV-ESKTLPEEVRALQVLKNSLDLPH 390
           N   + +    ++   PK     I+NA+E++   +  +S T  E+  A+  LK S  +  
Sbjct: 324 NPE-SQSKIAFSLVRTPKSTLPPIVNALEIYVANSFSQSLTNQEDGDAVTSLKTSYKV-- 380

Query: 391 RFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSIN 450
           +  W+GDPC+P  + W G +C +D  +                            + S+N
Sbjct: 381 KKNWHGDPCLPNDYIWEGLNCSYDSLTPP-------------------------RITSLN 415

Query: 451 LSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPA 510
           LS + + G I SS   +  ++ LDLS N   G IPE L +L  LR LNL  NTL+G VP+
Sbjct: 416 LSSSGLTGHISSSFSNLTMIQELDLSNNGLTGDIPEFLSKLKFLRVLNLENNTLTGSVPS 475

Query: 511 ALGGRLLHRA-----SFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGF-GVLGLIFLLII 564
                LL R+     S    +N GLC     R      S S K+ I        +F+L++
Sbjct: 476 ----ELLERSNTGSFSLRLGENPGLCTEISCRK-----SNSKKLVIPLVASFAALFILLL 526

Query: 565 CSMVWWKRRQNILRAQQIAARGAPYAKARTHL 596
            S V+W+ R    ++   A + +P AK+   L
Sbjct: 527 LSGVFWRIRNRRNKSVNSAPQTSPMAKSENKL 558

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	624
255536757	629	serine-threonine protein kinase, plant-t	0.998	0.990	0.769	0.0
224079175	596	predicted protein [Populus trichocarpa]	0.955	1.0	0.800	0.0
359483663	624	PREDICTED: putative leucine-rich repeat	0.963	0.963	0.778	0.0
15217901	626	receptor like protein 4 [Arabidopsis tha	1.0	0.996	0.745	0.0
6560758	697	F3M18.23 [Arabidopsis thaliana]	0.996	0.892	0.743	0.0
449457751	621	PREDICTED: putative leucine-rich repeat	0.988	0.993	0.747	0.0
356557713	631	PREDICTED: putative leucine-rich repeat	0.998	0.987	0.714	0.0
449511662	621	PREDICTED: putative leucine-rich repeat	0.988	0.993	0.744	0.0
356549305	625	PREDICTED: putative leucine-rich repeat	0.990	0.988	0.715	0.0
449457749	625	PREDICTED: putative leucine-rich repeat	0.951	0.950	0.758	0.0

>gi|255536757|ref|XP_002509445.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223549344|gb|EEF50832.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score = 1011 bits (2615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/630 (76%), Positives = 543/630 (86%), Gaps = 7/630 (1%)

Query: 1   MLRFHFL--WLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIP 58
           MLRF  +    LVF  A ++  A+  P+ MRISCGAR N+HSPPTNTLW+KDFAYTGGIP
Sbjct: 1   MLRFVIVQSCSLVFFLAFSTCLAKPGPWVMRISCGARVNVHSPPTNTLWYKDFAYTGGIP 60

Query: 59  ANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTL----TSFDHE 114
            NA+  S++ PPL TLRYFPLSEGP NCY I RVPKGHY+VR+F+ LV       + D+E
Sbjct: 61  TNASLTSYVAPPLSTLRYFPLSEGPNNCYNIKRVPKGHYSVRVFYALVAHHDPDPNSDNE 120

Query: 115 PLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQ 174
           PLFDISVEGTQIYSL+SGWS HDDR F EA VFL DGT SICFHSTGHGDPAILS+EILQ
Sbjct: 121 PLFDISVEGTQIYSLQSGWSSHDDRVFTEAQVFLTDGTASICFHSTGHGDPAILSIEILQ 180

Query: 175 VDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQ 234
           VDD++Y+FG  WG+G+ILRTATR SCGNGK KFDVDYSGD WGGDRFW+ + +FGQ +D+
Sbjct: 181 VDDRSYFFGPEWGQGVILRTATRFSCGNGKSKFDVDYSGDRWGGDRFWSRMTTFGQGSDK 240

Query: 235 RRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNT 294
             STE+SIK+AS APNFYPE+LYQTALVSTD+QPDL YTMDVDPN+NYS+WLHFAEID +
Sbjct: 241 AISTENSIKKASNAPNFYPESLYQTALVSTDTQPDLAYTMDVDPNKNYSVWLHFAEIDVS 300

Query: 295 ITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHA 354
           ITGVG+R+FDILINGD+ F+ VD+ KMSG RYTALVLNTTVAVNGRTLT+TL PK G+HA
Sbjct: 301 ITGVGKRIFDILINGDVEFEAVDITKMSGGRYTALVLNTTVAVNGRTLTITLRPKEGNHA 360

Query: 355 IINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFD 414
           I+NAIEVFE+I  ESKTL +EVRALQ LK++L LP RFGWNGDPCVPQQHPW+GADCQFD
Sbjct: 361 IVNAIEVFEVITAESKTLLDEVRALQTLKSALGLPLRFGWNGDPCVPQQHPWTGADCQFD 420

Query: 415 RTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLD 474
           RT  KWVIDGLGLDNQGLRGFLPN +SK  HLQSINLS NSI GAIP S+G+I SLEVLD
Sbjct: 421 RTISKWVIDGLGLDNQGLRGFLPNDMSKFHHLQSINLSTNSIHGAIPLSIGSITSLEVLD 480

Query: 475 LSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534
           LSYNFFNGSIPES+GQLT+LRRLNLNGN+LSGRVPAALGGRLLH ASFNFTDNAGLCGIP
Sbjct: 481 LSYNFFNGSIPESIGQLTSLRRLNLNGNSLSGRVPAALGGRLLHGASFNFTDNAGLCGIP 540

Query: 535 GLRACGPHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKART 594
           GLRACGPHLS  AKIGI FG       ++ICSM WWKRRQNILRAQQIAARGAPYAKART
Sbjct: 541 GLRACGPHLSAGAKIGIAFGASVAFLFMVICSMCWWKRRQNILRAQQIAARGAPYAKART 600

Query: 595 HLSHDIQLARHYNHHGNARTAAENGPSLLS 624
           H +HDIQ+ RHYN HG+ARTAAENGPSLLS
Sbjct: 601 HNAHDIQMTRHYN-HGHARTAAENGPSLLS 629

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079175|ref|XP_002305781.1| predicted protein [Populus trichocarpa] gi|222848745|gb|EEE86292.1| predicted protein [Populus trichocarpa]

 Score = 1008 bits (2607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/597 (80%), Positives = 527/597 (88%), Gaps = 1/597 (0%)

Query: 28  MRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCY 87
           MRISCGAR N+H+ PTNTLW+KDFAYTGGIPANATRPS+I+PPLKTLRYFPLS GP NCY
Sbjct: 1   MRISCGARLNVHTAPTNTLWYKDFAYTGGIPANATRPSYISPPLKTLRYFPLSSGPNNCY 60

Query: 88  IINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVF 147
            INRVPKGHY VR+FFGL    +FD+EPLFDIS+EGTQIYSLKSGW++HDD+ F EALVF
Sbjct: 61  NINRVPKGHYTVRVFFGLDGHRNFDNEPLFDISIEGTQIYSLKSGWTNHDDQVFTEALVF 120

Query: 148 LRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKF 207
           L DGT SICFHSTGHGDPAILS+EILQ++D+AYYFG  W +G+ILRTA RLSCGNGKPKF
Sbjct: 121 LTDGTASICFHSTGHGDPAILSIEILQMEDRAYYFGPAWVQGIILRTAARLSCGNGKPKF 180

Query: 208 DVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQ 267
           DVDYSGDHWGGDRFW+PI +FGQ +D  RSTES IK+AS APN+YPEALYQTALVSTD+Q
Sbjct: 181 DVDYSGDHWGGDRFWSPIKTFGQGSDLARSTESGIKKASNAPNYYPEALYQTALVSTDTQ 240

Query: 268 PDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYT 327
           PDL YTMDVDPNRNYSIWLHFAEID+++T  G+RVFDILING +AF+ VD+VKMSGDRYT
Sbjct: 241 PDLAYTMDVDPNRNYSIWLHFAEIDSSVTAAGKRVFDILINGVVAFEDVDIVKMSGDRYT 300

Query: 328 ALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLD 387
           ALVLNTTV V+GR LT+ LHPK GSHAIINAIEVFEI+  ESKT  EEVRALQ LK++L 
Sbjct: 301 ALVLNTTVTVSGRILTIGLHPKEGSHAIINAIEVFEILTAESKTSLEEVRALQSLKSALS 360

Query: 388 LPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQ 447
           LP RFGWNGDPCVPQ+HPW+GADC FD+TS KW IDGL LDNQGLRGF PN IS+L HLQ
Sbjct: 361 LPLRFGWNGDPCVPQEHPWNGADCHFDKTSSKWFIDGLSLDNQGLRGFFPNDISRLHHLQ 420

Query: 448 SINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGR 507
           +INLS NSIRGA+P S+GTI  L VLDLSYN FNGSIPESLGQLT+LRRLNLNGN+LSGR
Sbjct: 421 NINLSDNSIRGAVPPSIGTIPGLVVLDLSYNSFNGSIPESLGQLTSLRRLNLNGNSLSGR 480

Query: 508 VPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGFGVLGLIFLLIICSM 567
           VPAALGGRLLH ASFNFTDNAGLCGIPGLR CGPHLS   KIGI FG      L++ICSM
Sbjct: 481 VPAALGGRLLHGASFNFTDNAGLCGIPGLRTCGPHLSAGEKIGIAFGTSVGFLLMVICSM 540

Query: 568 VWWKRRQNILRAQQIAARGAPYAKARTHLSHDIQLARHYNHHGNARTAAENGPSLLS 624
            WWKRRQNILRAQQIA RGAPYAKART LSHDIQ+ RHY+ HGNARTAAENGPSLLS
Sbjct: 541 CWWKRRQNILRAQQIAERGAPYAKARTQLSHDIQMTRHYS-HGNARTAAENGPSLLS 596

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483663|ref|XP_002279791.2| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Vitis vinifera] gi|297740416|emb|CBI30598.3| unnamed protein product [Vitis vinifera]

 Score =  981 bits (2537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/604 (77%), Positives = 533/604 (88%), Gaps = 3/604 (0%)

Query: 23  HAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEG 82
           HAP+AMRISCGAR+N+H+ PTNTLW+KDFAYTGGIPANAT PSFI+PPLKTLRYFPLSEG
Sbjct: 22  HAPYAMRISCGARENVHTAPTNTLWYKDFAYTGGIPANATTPSFISPPLKTLRYFPLSEG 81

Query: 83  PENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHD-DRAF 141
           PENCYIINRVPKGHY+VR+FFGLV  +SFD EPLFD+SVEGTQIYSL SGWS+ D ++ F
Sbjct: 82  PENCYIINRVPKGHYSVRVFFGLVNESSFDSEPLFDVSVEGTQIYSLSSGWSNSDNEQVF 141

Query: 142 AEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCG 201
           AEALVFL DG+VS+CFHSTGHGDPAILS+EILQVDDKAY FG   G+G+ILRTA R+SCG
Sbjct: 142 AEALVFLTDGSVSLCFHSTGHGDPAILSIEILQVDDKAYNFGPQLGQGIILRTARRVSCG 201

Query: 202 NGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTAL 261
             + KF VDYSG+HWGGDRFWN + +FGQN+D   S E+SIKQASK+PNFYPE LYQ+AL
Sbjct: 202 AKQSKFGVDYSGNHWGGDRFWNSLPTFGQNSDHPLSVETSIKQASKSPNFYPEGLYQSAL 261

Query: 262 VSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKM 321
           VSTD+QPDL+YT+DVDPNRNYSIWLHFAEID ++TGVGQRVFDILING IAF+ VD+VKM
Sbjct: 262 VSTDNQPDLEYTLDVDPNRNYSIWLHFAEIDQSVTGVGQRVFDILINGHIAFKDVDIVKM 321

Query: 322 SGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQV 381
           SGD Y+ALVLNTTVAV+GRTLT+T+HP  G+HAI++AIEVFEI+  ESKTL  EVRALQ 
Sbjct: 322 SGDLYSALVLNTTVAVDGRTLTITMHPTKGNHAIVSAIEVFEILLAESKTLLNEVRALQK 381

Query: 382 LKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGIS 441
           LK+ L LP RFGWNGDPCVPQQHPWSGADC FD +S KWVIDGLGLDNQGLRGFLPN IS
Sbjct: 382 LKSGLGLPLRFGWNGDPCVPQQHPWSGADCLFDSSSRKWVIDGLGLDNQGLRGFLPNDIS 441

Query: 442 KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501
           +LRHLQSINLSGN I G IP SLG+IA LE+LDLSYN FNGSIPESLG LT+LR+L+LNG
Sbjct: 442 QLRHLQSINLSGNRIHGVIPPSLGSIAGLEILDLSYNSFNGSIPESLGLLTSLRKLSLNG 501

Query: 502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGFGVLGLIFL 561
           N+LSGRVP+ALGGRLLHRASFNFTDNAGLCGIPGLR CGPHLS  AKIGI  G    + +
Sbjct: 502 NSLSGRVPSALGGRLLHRASFNFTDNAGLCGIPGLRTCGPHLSVGAKIGIALGGCVALLV 561

Query: 562 LIICSMVWWKRRQNILRAQQI-AARGAPYAKARTHLSHDIQLARHYNHHGNARTAAENGP 620
           L+ICS+ W KRR+NILRAQ+I AAR APYAKARTH + D+Q+ R ++ H NARTAAENGP
Sbjct: 562 LVICSICWCKRRENILRAQRISAAREAPYAKARTHFARDVQMGR-FHGHDNARTAAENGP 620

Query: 621 SLLS 624
           SLLS
Sbjct: 621 SLLS 624

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217901|ref|NP_174156.1| receptor like protein 4 [Arabidopsis thaliana] gi|332192839|gb|AEE30960.1| receptor like protein 4 [Arabidopsis thaliana]

 Score =  979 bits (2532), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/625 (74%), Positives = 535/625 (85%), Gaps = 1/625 (0%)

Query: 1   MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN 60
           MLRF    LL+   +L SS AR AP+A+RISCGAR+N+ +PPT  LWFKD AYTGG+PAN
Sbjct: 2   MLRFILASLLLSSFSLYSSLARPAPYALRISCGARKNVRTPPTYALWFKDIAYTGGVPAN 61

Query: 61  ATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDIS 120
           AT P++ITPPLKTLRYFP+SEGP NCY I RVPKGHY+VRIFFGLV   SFD EPLFDIS
Sbjct: 62  ATTPTYITPPLKTLRYFPISEGPNNCYNIVRVPKGHYSVRIFFGLVDQPSFDKEPLFDIS 121

Query: 121 VEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAY 180
           +EGTQI SLKSGWS  DD+ FAEAL+FL  GT +ICFHSTGHGDPAILS+EILQVDDKAY
Sbjct: 122 IEGTQISSLKSGWSSQDDQVFAEALIFLLGGTATICFHSTGHGDPAILSIEILQVDDKAY 181

Query: 181 YFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTES 240
            FG+GWG+G+ILRTATRL+CG GK +FD DY GDHWGGDRFWN + SFG++AD  RSTE 
Sbjct: 182 SFGEGWGQGVILRTATRLTCGTGKSRFDEDYRGDHWGGDRFWNRMRSFGKSADSPRSTEE 241

Query: 241 SIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQ 300
           +IK+AS +PNFYPE LYQ+ALVSTD QPDL Y++DV+PNRNYS+WLHFAEIDNTIT  G+
Sbjct: 242 TIKKASVSPNFYPEGLYQSALVSTDDQPDLTYSLDVEPNRNYSVWLHFAEIDNTITAEGK 301

Query: 301 RVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIE 360
           RVFD++INGD  F+ VD++KMSG RY ALVLN TV V+GRTLTV L PK G HAIINAIE
Sbjct: 302 RVFDVVINGDTFFEDVDIIKMSGGRYAALVLNATVTVSGRTLTVVLQPKAGGHAIINAIE 361

Query: 361 VFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKW 420
           VFEII  E KTL +EV ALQ +K +L LP RFGWNGDPCVP QHPWSGA+CQ D+ + +W
Sbjct: 362 VFEIITAEFKTLRDEVSALQKMKKALGLPSRFGWNGDPCVPPQHPWSGANCQLDKNTSRW 421

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
            IDGL LDNQGL+GFLPN ISKL+HLQSINLS N+IRG IP+SLG++ SLEVLDLSYN F
Sbjct: 422 FIDGLDLDNQGLKGFLPNDISKLKHLQSINLSENNIRGGIPASLGSVTSLEVLDLSYNSF 481

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 540
           NGSIPE+LG+LT+LR LNLNGN+LSG+VPAA+GGRLLHRASFNFTDNAGLCGIPGL ACG
Sbjct: 482 NGSIPETLGELTSLRILNLNGNSLSGKVPAAVGGRLLHRASFNFTDNAGLCGIPGLPACG 541

Query: 541 PHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDI 600
           PHLS+ AKIGI FGV     L++ C+M+WWKRRQNILRAQQIAARGAPYAK RTH+SHDI
Sbjct: 542 PHLSSGAKIGIAFGVSLAFLLIVACAMIWWKRRQNILRAQQIAARGAPYAKKRTHVSHDI 601

Query: 601 QLARH-YNHHGNARTAAENGPSLLS 624
           Q++RH +N+HG ARTA ENGPSLLS
Sbjct: 602 QMSRHGHNNHGQARTAVENGPSLLS 626

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6560758|gb|AAF16758.1|AC010155_11 F3M18.23 [Arabidopsis thaliana]

 Score =  975 bits (2521), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/623 (74%), Positives = 532/623 (85%), Gaps = 1/623 (0%)

Query: 1   MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN 60
           MLRF    LL+   +L SS AR AP+A+RISCGAR+N+ +PPT  LWFKD AYTGG+PAN
Sbjct: 2   MLRFILASLLLSSFSLYSSLARPAPYALRISCGARKNVRTPPTYALWFKDIAYTGGVPAN 61

Query: 61  ATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDIS 120
           AT P++ITPPLKTLRYFP+SEGP NCY I RVPKGHY+VRIFFGLV   SFD EPLFDIS
Sbjct: 62  ATTPTYITPPLKTLRYFPISEGPNNCYNIVRVPKGHYSVRIFFGLVDQPSFDKEPLFDIS 121

Query: 121 VEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAY 180
           +EGTQI SLKSGWS  DD+ FAEAL+FL  GT +ICFHSTGHGDPAILS+EILQVDDKAY
Sbjct: 122 IEGTQISSLKSGWSSQDDQVFAEALIFLLGGTATICFHSTGHGDPAILSIEILQVDDKAY 181

Query: 181 YFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTES 240
            FG+GWG+G+ILRTATRL+CG GK +FD DY GDHWGGDRFWN + SFG++AD  RSTE 
Sbjct: 182 SFGEGWGQGVILRTATRLTCGTGKSRFDEDYRGDHWGGDRFWNRMRSFGKSADSPRSTEE 241

Query: 241 SIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQ 300
           +IK+AS +PNFYPE LYQ+ALVSTD QPDL Y++DV+PNRNYS+WLHFAEIDNTIT  G+
Sbjct: 242 TIKKASVSPNFYPEGLYQSALVSTDDQPDLTYSLDVEPNRNYSVWLHFAEIDNTITAEGK 301

Query: 301 RVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIE 360
           RVFD++INGD  F+ VD++KMSG RY ALVLN TV V+GRTLTV L PK G HAIINAIE
Sbjct: 302 RVFDVVINGDTFFEDVDIIKMSGGRYAALVLNATVTVSGRTLTVVLQPKAGGHAIINAIE 361

Query: 361 VFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKW 420
           VFEII  E KTL +EV ALQ +K +L LP RFGWNGDPCVP QHPWSGA+CQ D+ + +W
Sbjct: 362 VFEIITAEFKTLRDEVSALQKMKKALGLPSRFGWNGDPCVPPQHPWSGANCQLDKNTSRW 421

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
            IDGL LDNQGL+GFLPN ISKL+HLQSINLS N+IRG IP+SLG++ SLEVLDLSYN F
Sbjct: 422 FIDGLDLDNQGLKGFLPNDISKLKHLQSINLSENNIRGGIPASLGSVTSLEVLDLSYNSF 481

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 540
           NGSIPE+LG+LT+LR LNLNGN+LSG+VPAA+GGRLLHRASFNFTDNAGLCGIPGL ACG
Sbjct: 482 NGSIPETLGELTSLRILNLNGNSLSGKVPAAVGGRLLHRASFNFTDNAGLCGIPGLPACG 541

Query: 541 PHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDI 600
           PHLS+ AKIGI FGV     L++ C+M+WWKRRQNILRAQQIAARGAPYAK RTH+SHDI
Sbjct: 542 PHLSSGAKIGIAFGVSLAFLLIVACAMIWWKRRQNILRAQQIAARGAPYAKKRTHVSHDI 601

Query: 601 QLARH-YNHHGNARTAAENGPSL 622
           Q++RH +N+HG ARTA ENGPS 
Sbjct: 602 QMSRHGHNNHGQARTAVENGPSF 624

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457751|ref|XP_004146611.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like isoform 2 [Cucumis sativus]

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/619 (74%), Positives = 523/619 (84%), Gaps = 2/619 (0%)

Query: 1   MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN 60
           MLRF  L LL+     + SSAR  PFA+RISCGAR ++H+PPTNT WFKDFAYTGGIPAN
Sbjct: 1   MLRFILLCLLIHGFLFSLSSARPLPFALRISCGARNDVHTPPTNTPWFKDFAYTGGIPAN 60

Query: 61  ATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDIS 120
           ATRPSFI+PPLKTLRYFPL  GPENCYIINRVP+GHY+VRIFFGLV   +FD EPLFD+S
Sbjct: 61  ATRPSFISPPLKTLRYFPLYTGPENCYIINRVPRGHYSVRIFFGLVNQNNFDTEPLFDVS 120

Query: 121 VEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAY 180
           VEGTQ  SLKSGWS++D++ FAEALVFL DG+ SICFHSTGHGDPAIL++EILQ+D+KAY
Sbjct: 121 VEGTQFCSLKSGWSNNDEQTFAEALVFLTDGSASICFHSTGHGDPAILAIEILQIDEKAY 180

Query: 181 YFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTES 240
            FG  WGEG+ILRTATRLSCG+GKPKFD D  G+HWGGDRFW  I +FGQ +D+  S E+
Sbjct: 181 DFGPNWGEGVILRTATRLSCGDGKPKFDADSHGNHWGGDRFWTAIKTFGQQSDRIISVEN 240

Query: 241 SIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQ 300
           SIKQAS +PNFYPEALY++ALVSTDSQP+L Y MDVDPNRNYSIWLHFAEID +I  VGQ
Sbjct: 241 SIKQASISPNFYPEALYRSALVSTDSQPELTYVMDVDPNRNYSIWLHFAEIDGSIRNVGQ 300

Query: 301 RVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIE 360
           R+FDILINGD+AF  VD++K++G  YTALVLN+TVAVNGRTLT+TL PK GS+AIINAIE
Sbjct: 301 RIFDILINGDVAFPNVDILKLTGGHYTALVLNSTVAVNGRTLTITLQPKEGSYAIINAIE 360

Query: 361 VFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKW 420
           VFE+++ E KT P EVRAL+ LK +L LP R GWNGDPCVPQQHPWSGADCQ+D+  +KW
Sbjct: 361 VFEVVSAEVKTSPNEVRALRSLKKALALPVRLGWNGDPCVPQQHPWSGADCQYDKVGNKW 420

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           VIDGLGLDNQGL GFLPN  S+LRHLQSINLSGNSI G IP+SLGTIA LEVLDLSYNFF
Sbjct: 421 VIDGLGLDNQGLTGFLPNETSQLRHLQSINLSGNSIHGPIPASLGTIAKLEVLDLSYNFF 480

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 540
           NGSIPESLGQLT+LR LNLNGN+LSGRVPAALG RLLHRASFNFTDNAGLCGIPGL ACG
Sbjct: 481 NGSIPESLGQLTSLRTLNLNGNSLSGRVPAALGARLLHRASFNFTDNAGLCGIPGLPACG 540

Query: 541 PHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDI 600
           PHLS  AKIGI FG L +  L+I  ++  WKRRQNILRAQ  A     YAKART LS DI
Sbjct: 541 PHLSAGAKIGIAFGALIIFLLIITFAVCCWKRRQNILRAQNAARAAP-YAKARTQLSRDI 599

Query: 601 QLARHYNHHGNARTAAENG 619
           Q+  H+N  G+ RT  ENG
Sbjct: 600 QMTMHHN-QGHTRTPNENG 617

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557713|ref|XP_003547157.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Glycine max]

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/624 (71%), Positives = 512/624 (82%), Gaps = 1/624 (0%)

Query: 2   LRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANA 61
            +F  LW L  C A  + +A+  PF MRISCGAR N+ + PT TLW+KDF YTGGIP NA
Sbjct: 7   FQFLLLWTLFPCFAFIARAAQRGPFGMRISCGARHNVQTEPTTTLWYKDFGYTGGIPTNA 66

Query: 62  TRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISV 121
           +  S+I PPLKTLRYFPLSEGP NCY I  VPKGHY++RIFFGLV       EPLFDIS+
Sbjct: 67  STTSYIAPPLKTLRYFPLSEGPSNCYNIYNVPKGHYSIRIFFGLVAQARATDEPLFDISI 126

Query: 122 EGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYY 181
           +GTQIYSLKSGW+  DD+AF +A VFL DG+VSICFH TGHGDPAILS+EILQ+DDKAYY
Sbjct: 127 QGTQIYSLKSGWTTQDDQAFTQAQVFLMDGSVSICFHGTGHGDPAILSIEILQIDDKAYY 186

Query: 182 FGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESS 241
           FG  W  G+ILRT  RLSCG G+ K+ VDY  D WGGDRFW  I +FG ++D+RRS E+ 
Sbjct: 187 FGPQWSRGIILRTVKRLSCGFGQSKYGVDYGADPWGGDRFWQHIKTFGDDSDRRRSVETR 246

Query: 242 IKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQR 301
           IK+AS+ PNFYPE LY++ALVST SQPDL YT+DVDPNRNYS+WLHFAEIDN++T  GQR
Sbjct: 247 IKKASRPPNFYPETLYRSALVSTSSQPDLTYTLDVDPNRNYSVWLHFAEIDNSVTAEGQR 306

Query: 302 VFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEV 361
           VFDI+INGD+AF+ VD+VK+SGDRYTALVLNTTV VNGRTLT+ L PK GS AIINAIE+
Sbjct: 307 VFDIMINGDVAFKDVDIVKLSGDRYTALVLNTTVTVNGRTLTIALSPKNGSFAIINAIEI 366

Query: 362 FEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWV 421
            EII  ESKTL +EV ALQ LK +L LP RFGWNGDPC+PQQHPW+GADC+ D++S KWV
Sbjct: 367 LEIIMTESKTLSDEVMALQKLKKALGLPPRFGWNGDPCIPQQHPWTGADCRLDKSSSKWV 426

Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           IDGLGLDNQG++GFLPN IS+L +LQ +NLSGNSI+G IPSSLGTI SL+VLDLSYNFFN
Sbjct: 427 IDGLGLDNQGVKGFLPNDISRLHNLQILNLSGNSIQGPIPSSLGTITSLQVLDLSYNFFN 486

Query: 482 GSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP 541
           GSIPESLGQLT+L+RLNLNGN LSGRVP  LGGRLLH ASFNFTDNAGLCGIPGL  CGP
Sbjct: 487 GSIPESLGQLTSLQRLNLNGNFLSGRVPTTLGGRLLHGASFNFTDNAGLCGIPGLPTCGP 546

Query: 542 HLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDIQ 601
           HLS  AK+GIG G    + LLI  S+ WWKRRQNILR QQI AR APYAKART  S DIQ
Sbjct: 547 HLSAGAKVGIGLGASFTLLLLITGSVCWWKRRQNILRVQQITARAAPYAKARTQFSRDIQ 606

Query: 602 LARH-YNHHGNARTAAENGPSLLS 624
           + RH  N++GN++TAAENGP LLS
Sbjct: 607 MTRHNSNNYGNSQTAAENGPILLS 630

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511662|ref|XP_004164020.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like isoform 2 [Cucumis sativus]

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/619 (74%), Positives = 521/619 (84%), Gaps = 2/619 (0%)

Query: 1   MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN 60
           MLRF  L LL+     + SS R  PFA+RISCGAR ++H+PPTNT WFKDFAYTGGIPAN
Sbjct: 1   MLRFILLCLLIHGFLFSLSSPRPLPFALRISCGARNDVHTPPTNTPWFKDFAYTGGIPAN 60

Query: 61  ATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDIS 120
           ATRPSFI+PPLKTLRYFPL  GPENCYIINRVP+GHY+VRIFFGLV   +FD EPLFD+S
Sbjct: 61  ATRPSFISPPLKTLRYFPLYTGPENCYIINRVPRGHYSVRIFFGLVNQNNFDTEPLFDVS 120

Query: 121 VEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAY 180
           VEGTQ  SLKSGWS++D++ FAEALVFL DG+ SICFHSTGHGDPAI ++EILQ+D+KAY
Sbjct: 121 VEGTQFCSLKSGWSNNDEQTFAEALVFLTDGSASICFHSTGHGDPAIPAIEILQIDEKAY 180

Query: 181 YFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTES 240
            FG  WGEG+ILRTATRLSCG+GKPKFD D  G+HWGGDRFW  I +FGQ +D+  S E+
Sbjct: 181 DFGPNWGEGVILRTATRLSCGDGKPKFDADSHGNHWGGDRFWTAIKTFGQQSDRIISVEN 240

Query: 241 SIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQ 300
           SIKQAS +PNFYPEALY++ALVSTDSQP+L Y MDVDPNRNYSIWLHFAEID +I  VGQ
Sbjct: 241 SIKQASISPNFYPEALYRSALVSTDSQPELTYVMDVDPNRNYSIWLHFAEIDGSIRNVGQ 300

Query: 301 RVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIE 360
           R+FDILINGD+AF  VD++K++G  YTALVLN+TVAVNGRTLT+TL PK GS+AIINAIE
Sbjct: 301 RIFDILINGDVAFPNVDILKLTGGHYTALVLNSTVAVNGRTLTITLQPKEGSYAIINAIE 360

Query: 361 VFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKW 420
           VFE+++ E KT P EVRAL+ LK +L LP R GWNGDPCVPQQHPWSGADCQ+D+  +KW
Sbjct: 361 VFEVVSAEVKTSPNEVRALRSLKKALALPVRLGWNGDPCVPQQHPWSGADCQYDKVGNKW 420

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           VIDGLGLDNQGL GFLPN  S+LRHLQSINLSGNSI G IP+SLGTIA LEVLDLSYNFF
Sbjct: 421 VIDGLGLDNQGLTGFLPNETSQLRHLQSINLSGNSIHGPIPASLGTIAKLEVLDLSYNFF 480

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 540
           NGSIPESLGQLT+LR LNLNGN+LSGRVPAALG RLLHRASFNFTDNAGLCGIPGL ACG
Sbjct: 481 NGSIPESLGQLTSLRTLNLNGNSLSGRVPAALGARLLHRASFNFTDNAGLCGIPGLPACG 540

Query: 541 PHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDI 600
           PHLS  AKIGI FG L +  L+I  ++  WKRRQNILRAQ  A     YAKART LS DI
Sbjct: 541 PHLSAGAKIGIAFGALIIFLLIITFAVCCWKRRQNILRAQNAARAAP-YAKARTQLSRDI 599

Query: 601 QLARHYNHHGNARTAAENG 619
           Q+  H+N  G+ RT  ENG
Sbjct: 600 QMTMHHN-QGHTRTPNENG 617

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549305|ref|XP_003543034.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Glycine max]

 Score =  937 bits (2422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/623 (71%), Positives = 508/623 (81%), Gaps = 5/623 (0%)

Query: 2   LRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANA 61
            RF  LW+L  C A  + +A+  PFAMRISCGARQN+ + PT TLW+KDF YTGGIP NA
Sbjct: 7   FRFLLLWMLFLCFACTARAAQRGPFAMRISCGARQNVQTKPTTTLWYKDFGYTGGIPTNA 66

Query: 62  TRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISV 121
              S+I PPLKTLRYFPLSEGP NCY INRVPKGHY++RIFFGLV       EPLFDIS+
Sbjct: 67  KTSSYIAPPLKTLRYFPLSEGPSNCYNINRVPKGHYSIRIFFGLVAQARATDEPLFDISI 126

Query: 122 EGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYY 181
           +GTQIYSLKSGW+  DD+AF EA VFL DG+VSICFH TGHGDPAILS+EILQ+D+KAYY
Sbjct: 127 QGTQIYSLKSGWTTQDDQAFTEAQVFLMDGSVSICFHGTGHGDPAILSIEILQIDNKAYY 186

Query: 182 FGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESS 241
           FG  W +G+ILRT  RLSCG G+ K+ VDY  D  GGDRFW    +FG+++D+ RS E+ 
Sbjct: 187 FGSQWSQGIILRTVKRLSCGFGQSKYGVDYGADPRGGDRFWQHTETFGEDSDRPRSVETR 246

Query: 242 IKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQR 301
           IKQAS  PNFYPE LY++ALVST SQP+L YT+DVDPN+NYS+WLHFAEIDN++T  GQR
Sbjct: 247 IKQASHPPNFYPETLYRSALVSTSSQPELTYTLDVDPNKNYSVWLHFAEIDNSVTAEGQR 306

Query: 302 VFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEV 361
           VFDI+INGD+AF+ VD+VK+SGDRYTALVLNTTV VNGRTLT+ L PK GS AIINAIE+
Sbjct: 307 VFDIMINGDVAFKDVDIVKLSGDRYTALVLNTTVVVNGRTLTIALSPKDGSFAIINAIEI 366

Query: 362 FEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWV 421
            E+I  ESKTL +EV ALQ LK +L LP RFGWNGDPCVPQQHPW+GADC+ D++S KWV
Sbjct: 367 MEVIMAESKTLSDEVMALQKLKKALGLPPRFGWNGDPCVPQQHPWTGADCRLDKSSSKWV 426

Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           IDGLGLDNQGL+GFLPN IS+L +LQ +NLSGNSI+G IPS LGTIASL+VLDLSYNFFN
Sbjct: 427 IDGLGLDNQGLKGFLPNDISRLHNLQILNLSGNSIQGPIPSPLGTIASLQVLDLSYNFFN 486

Query: 482 GSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP 541
           GSIPESLGQLT+L+RLNLNGN LSGRVPA LGGRLLH ASFNFTDNAGLCGIPGL  CGP
Sbjct: 487 GSIPESLGQLTSLQRLNLNGNFLSGRVPATLGGRLLHGASFNFTDNAGLCGIPGLPTCGP 546

Query: 542 HLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDIQ 601
           HLS  AK+GIG GV   + LLI  S+ WWKRRQNILR QQI AR APYAKART  S DIQ
Sbjct: 547 HLSAGAKVGIGLGVSFTLLLLITGSVCWWKRRQNILRVQQITARAAPYAKARTQFSRDIQ 606

Query: 602 LARHYNHHGNARTAAENGPSLLS 624
           + RH     N    AENGP LLS
Sbjct: 607 MTRH-----NNNNNAENGPILLS 624

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457749|ref|XP_004146610.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like isoform 1 [Cucumis sativus]

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/596 (75%), Positives = 510/596 (85%), Gaps = 2/596 (0%)

Query: 24  APFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGP 83
            PFA+RISCGAR ++H+PPTNT WFKDFAYTGGIPANATRPSFI+PPLKTLRYFPL  GP
Sbjct: 28  VPFALRISCGARNDVHTPPTNTPWFKDFAYTGGIPANATRPSFISPPLKTLRYFPLYTGP 87

Query: 84  ENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAE 143
           ENCYIINRVP+GHY+VRIFFGLV   +FD EPLFD+SVEGTQ  SLKSGWS++D++ FAE
Sbjct: 88  ENCYIINRVPRGHYSVRIFFGLVNQNNFDTEPLFDVSVEGTQFCSLKSGWSNNDEQTFAE 147

Query: 144 ALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNG 203
           ALVFL DG+ SICFHSTGHGDPAIL++EILQ+D+KAY FG  WGEG+ILRTATRLSCG+G
Sbjct: 148 ALVFLTDGSASICFHSTGHGDPAILAIEILQIDEKAYDFGPNWGEGVILRTATRLSCGDG 207

Query: 204 KPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVS 263
           KPKFD D  G+HWGGDRFW  I +FGQ +D+  S E+SIKQAS +PNFYPEALY++ALVS
Sbjct: 208 KPKFDADSHGNHWGGDRFWTAIKTFGQQSDRIISVENSIKQASISPNFYPEALYRSALVS 267

Query: 264 TDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSG 323
           TDSQP+L Y MDVDPNRNYSIWLHFAEID +I  VGQR+FDILINGD+AF  VD++K++G
Sbjct: 268 TDSQPELTYVMDVDPNRNYSIWLHFAEIDGSIRNVGQRIFDILINGDVAFPNVDILKLTG 327

Query: 324 DRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLK 383
             YTALVLN+TVAVNGRTLT+TL PK GS+AIINAIEVFE+++ E KT P EVRAL+ LK
Sbjct: 328 GHYTALVLNSTVAVNGRTLTITLQPKEGSYAIINAIEVFEVVSAEVKTSPNEVRALRSLK 387

Query: 384 NSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKL 443
            +L LP R GWNGDPCVPQQHPWSGADCQ+D+  +KWVIDGLGLDNQGL GFLPN  S+L
Sbjct: 388 KALALPVRLGWNGDPCVPQQHPWSGADCQYDKVGNKWVIDGLGLDNQGLTGFLPNETSQL 447

Query: 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT 503
           RHLQSINLSGNSI G IP+SLGTIA LEVLDLSYNFFNGSIPESLGQLT+LR LNLNGN+
Sbjct: 448 RHLQSINLSGNSIHGPIPASLGTIAKLEVLDLSYNFFNGSIPESLGQLTSLRTLNLNGNS 507

Query: 504 LSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGFGVLGLIFLLI 563
           LSGRVPAALG RLLHRASFNFTDNAGLCGIPGL ACGPHLS  AKIGI FG L +  L+I
Sbjct: 508 LSGRVPAALGARLLHRASFNFTDNAGLCGIPGLPACGPHLSAGAKIGIAFGALIIFLLII 567

Query: 564 ICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDIQLARHYNHHGNARTAAENG 619
             ++  WKRRQNILRAQ  A     YAKART LS DIQ+  H+N  G+ RT  ENG
Sbjct: 568 TFAVCCWKRRQNILRAQNAARAAP-YAKARTQLSRDIQMTMHHN-QGHTRTPNENG 621

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	624
TAIR|locus:2032221	626	RLP4 "receptor like protein 4"	1.0	0.996	0.734	1.3e-258
TAIR|locus:2031175	628	AT1G25570 [Arabidopsis thalian	0.849	0.843	0.375	8e-85
TAIR|locus:2083023	517	AT3G05990 [Arabidopsis thalian	0.439	0.529	0.354	3.9e-35
TAIR|locus:2094103	519	AT3G19230 [Arabidopsis thalian	0.676	0.813	0.274	2.8e-33
TAIR|locus:2055160	886	AT2G14440 [Arabidopsis thalian	0.740	0.521	0.288	3.1e-32
TAIR|locus:2028446	888	AT1G49100 [Arabidopsis thalian	0.657	0.461	0.272	6.9e-32
TAIR|locus:2017572	882	AT1G51790 [Arabidopsis thalian	0.727	0.514	0.281	5.7e-30
TAIR|locus:2195850	890	AT1G51860 [Arabidopsis thalian	0.762	0.534	0.254	5.8e-30
TAIR|locus:2078186	889	AT3G46340 [Arabidopsis thalian	0.512	0.359	0.298	1.6e-29
TAIR|locus:2059804	892	AT2G04300 [Arabidopsis thalian	0.655	0.458	0.270	2.8e-29

TAIR|locus:2032221 RLP4 "receptor like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 2489 (881.2 bits), Expect = 1.3e-258, P = 1.3e-258
 Identities = 459/625 (73%), Positives = 526/625 (84%)

Query:     1 MLRFHFLWLLVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN 60
             MLRF    LL+   +L SS AR AP+A+RISCGAR+N+ +PPT  LWFKD AYTGG+PAN
Sbjct:     2 MLRFILASLLLSSFSLYSSLARPAPYALRISCGARKNVRTPPTYALWFKDIAYTGGVPAN 61

Query:    61 ATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDIS 120
             AT P++ITPPLKTLRYFP+SEGP NCY I RVPKGHY+VRIFFGLV   SFD EPLFDIS
Sbjct:    62 ATTPTYITPPLKTLRYFPISEGPNNCYNIVRVPKGHYSVRIFFGLVDQPSFDKEPLFDIS 121

Query:   121 VEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAY 180
             +EGTQI SLKSGWS  DD+ FAEAL+FL  GT +ICFHSTGHGDPAILS+EILQVDDKAY
Sbjct:   122 IEGTQISSLKSGWSSQDDQVFAEALIFLLGGTATICFHSTGHGDPAILSIEILQVDDKAY 181

Query:   181 YFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTES 240
              FG+GWG+G+ILRTATRL+CG GK +FD DY GDHWGGDRFWN + SFG++AD  RSTE 
Sbjct:   182 SFGEGWGQGVILRTATRLTCGTGKSRFDEDYRGDHWGGDRFWNRMRSFGKSADSPRSTEE 241

Query:   241 SIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQ 300
             +IK+AS +PNFYPE LYQ+ALVSTD QPDL Y++DV+PNRNYS+WLHFAEIDNTIT  G+
Sbjct:   242 TIKKASVSPNFYPEGLYQSALVSTDDQPDLTYSLDVEPNRNYSVWLHFAEIDNTITAEGK 301

Query:   301 RVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIE 360
             RVFD++INGD  F+ VD++KMSG RY ALVLN TV V+GRTLTV L PK G HAIINAIE
Sbjct:   302 RVFDVVINGDTFFEDVDIIKMSGGRYAALVLNATVTVSGRTLTVVLQPKAGGHAIINAIE 361

Query:   361 VFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKW 420
             VFEII  E KTL +EV ALQ +K +L LP RFGWNGDPCVP QHPWSGA+CQ D+ + +W
Sbjct:   362 VFEIITAEFKTLRDEVSALQKMKKALGLPSRFGWNGDPCVPPQHPWSGANCQLDKNTSRW 421

Query:   421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
              IDGL LDNQGL+GFLPN ISKL+HLQSINLS N+IRG IP+SLG++ SLEVLDLSYN F
Sbjct:   422 FIDGLDLDNQGLKGFLPNDISKLKHLQSINLSENNIRGGIPASLGSVTSLEVLDLSYNSF 481

Query:   481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 540
             NGSIPE+LG+LT+LR LNLNGN+LSG+VPAA+GGRLLHRASFNFTDNAGLCGIPGL ACG
Sbjct:   482 NGSIPETLGELTSLRILNLNGNSLSGKVPAAVGGRLLHRASFNFTDNAGLCGIPGLPACG 541

Query:   541 PHLSTSAKXXXXXXXXXXXXXXXXCSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDI 600
             PHLS+ AK                C+M+WWKRRQNILRAQQIAARGAPYAK RTH+SHDI
Sbjct:   542 PHLSSGAKIGIAFGVSLAFLLIVACAMIWWKRRQNILRAQQIAARGAPYAKKRTHVSHDI 601

Query:   601 QLARH-YNHHGNARTAAENGPSLLS 624
             Q++RH +N+HG ARTA ENGPSLLS
Sbjct:   602 QMSRHGHNNHGQARTAVENGPSLLS 626

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2031175 AT1G25570 [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 210/559 (37%), Positives = 302/559 (54%)

Query:     6 FLWLLVFCSALNSSSARHAPF--AMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATR 63
             FL+L  F   L+ S +  +PF  +  I CG+ +   +   N  W  D  Y+GG  A  + 
Sbjct:     8 FLFLSSFFLLLHLSLS--SPFNTSFFIDCGSPET-STDVFNRTWLPDQFYSGGSTAVVSE 64

Query:    64 P-SFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVE 122
             P  F     KT+RYFPLS G +NCY++  +P G Y +R F          H P FD+SVE
Sbjct:    65 PLRFHLIAEKTIRYFPLSFGKKNCYVVP-LPPGRYYLRTFTVYDNYDGKSHSPSFDVSVE 123

Query:   123 GTQIYSLKSGWSDH--DDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAY 180
             GT ++S +S W +    D ++++   F+ DG + +CF+S     P + SLE+LQVD  +Y
Sbjct:   124 GTLVFSWRSPWPESLLRDGSYSDLFAFIGDGELDLCFYSIATDPPIVGSLEVLQVDPSSY 183

Query:   181 YFGQGWGEGLILRTATRLSCGNGK--PKFD--VDYSGDHWGGDRFWNPILSFGQNADQRR 236
                 G G+ ++L    RLSCG+ +  P F    D  G  W  D  +    S  ++  +  
Sbjct:   184 D-ADGTGQNVLLVNYGRLSCGSDQWGPGFTNHTDNFGRSWQSDEDFRSEDS--RSVARSL 240

Query:   237 STESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTIT 296
             ST   IK   +APN++P  LYQTA V+      L Y ++VD   +Y +W HF+EID+T+ 
Sbjct:   241 STLEKIKGVDQAPNYFPMKLYQTA-VTVSGGGSLVYELEVDAKLDYLLWFHFSEIDSTVK 299

Query:   297 GVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVA-VNGRTLTVTLHPKGGSHAI 355
               GQRVFD+++N D     VDV    G  + A  LN TV  ++   +TV L    G+  I
Sbjct:   300 KAGQRVFDLVVN-DNNVSRVDVFHEVGG-FAAYSLNYTVKNLSSTIVTVKLSSVSGA-PI 356

Query:   356 INAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQ-HPWSGADCQFD 414
             I+ +E + I+  +  T+PE+V A++ LK+SL +P R GWNGDPC P     W G  C+ +
Sbjct:   357 ISGLENYAIVPADMATVPEQVTAMKALKDSLRVPDRMGWNGDPCAPTSWDAWEGVSCRPN 416

Query:   415 RTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLD 474
                   VI  + L +QGL+GF+   IS L +L S+NLS N++ G +P  LG   SL  LD
Sbjct:   417 SQGSALVIFQIDLGSQGLKGFISEQISLLTNLNSLNLSSNTLSGQLPLGLGH-KSLVSLD 475

Query:   475 LSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534
             LS N   G IPESL  L++L+ + LNGN L G+VP  +    +H    + + N GLCG+P
Sbjct:   476 LSNNQLTGPIPESL-TLSSLKLVLLNGNELQGKVPEEVYSVGVHGGIIDLSGNKGLCGVP 534

Query:   535 GLRAC-----GPHLSTSAK 548
              L  C       HLS   K
Sbjct:   535 SLPTCPLLWENGHLSKGGK 553

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2083023 AT3G05990 [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 3.9e-35, P = 3.9e-35
 Identities = 106/299 (35%), Positives = 155/299 (51%)

Query:   219 DRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDP 278
             DRFW P  S        R  E      S   N  P  ++ T L +T  QP L++T    P
Sbjct:   218 DRFWEPY-SLNSTVPNNRKLE-----VSGFWNLPPSRIFNTDLRATQVQP-LEFTWPPMP 270

Query:   279 NR--NYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVA 336
              +   Y I L+FA  D+   G G RVFD+ +NG   ++ + V   +G    A++  +   
Sbjct:   271 LKMATYYIALYFAH-DSDSMGDGSRVFDVSVNGITYYKELSVTP-AG----AVIFASRWP 324

Query:   337 VNGRTLTVTLHPKGGSHA--IINAIEVFEIIAVESKTLPEEVRALQVLKNSL-DLPHRFG 393
             + G T T+ L P+ GS+   +IN  E+FE++++  KTL  +V AL  +KNS  + P    
Sbjct:   325 LEGLT-TLALSPRSGSNLPPLINGGEMFELLSLGGKTLVRDVTALNAIKNSFKNAPA--D 381

Query:   394 WNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSG 453
             W+GDPC+P+ + WSG  C       +  +  L L N G+ G L   ++KL  L SI L  
Sbjct:   382 WSGDPCLPKNYSWSGISCS---EGPRIRVVALNLTNMGVSGSLAPAVAKLTALSSIWLGN 438

Query:   454 NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
             NS+ G++P    ++  LE L    N F+GSIP SLG +  LR L L  N L+G+VP+ L
Sbjct:   439 NSLSGSLPD-FSSLKRLESLHFEDNLFSGSIPSSLGGVPHLRELFLQNNNLTGQVPSNL 496

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2094103 AT3G19230 [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 2.8e-33, P = 2.8e-33
 Identities = 125/455 (27%), Positives = 211/455 (46%)

Query:    67 ITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQI 126
             + P L TLRYFP     ++CY         Y +R  +        ++ P+FD  + GT+ 
Sbjct:    60 LVPILSTLRYFPDKSSRKHCYNFPVAKTSKYLIRTTYYYGNFDGKNNPPVFDQIIGGTK- 118

Query:   127 YSLKSGWSDH--DDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQ 184
             +S+ +   D+     ++ E +V +    +S+C     H   +   +  L V         
Sbjct:   119 WSVVNTSEDYAKGQSSYYEIIVGVPGNRLSVCLAKNAHTLSSSPFISSLDVQSLEDTMYN 178

Query:   185 GWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQ 244
                 G    +    +   G  +  + Y  D +  +R W P       +DQ+  T +S  +
Sbjct:   179 STDLGSYKLSLIARNSFGGDGEI-ISYPDDKY--NRLWQPF------SDQKHLTVTSRSR 229

Query:   245 ASKAPNFY---PEALYQTALVSTDSQP-DLQYTMDVDPNRNYSIWLHFAEIDNTITG-VG 299
              + + NF+   P   +     ++  +P +LQ+     P   Y + L+F   DN   G + 
Sbjct:   230 INPS-NFWNIPPAEAFVEGFTASKGKPLELQWPPFPLPATKYYVALYFQ--DNRSPGPMS 286

Query:   300 QRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHA--IIN 357
              R FD+ +NG ++F    + K++      +V +    ++G+T  +TL P   +     IN
Sbjct:   287 WRAFDVSVNG-LSF----LRKLNVSTNGVMVYSGQWPLSGQT-QITLTPAKDAPVGPFIN 340

Query:   358 AIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTS 417
             A EVF+I+ +   T  ++  A++ L  S+  P    W+GDPC+P+ + W+G  C  D+ +
Sbjct:   341 AGEVFQILPLGGTTNIKDAIAMEDLLESIMKPP-VDWSGDPCLPRANSWTGLTCSKDKIA 399

Query:   418 HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY 477
                VI  L L N GL G LP  I+K+  L+ + L  N + G IP  L  +  LE L L  
Sbjct:   400 R--VIS-LNLTNLGLSGSLPPSINKMTALKDLWLGKNKLTGPIPD-LSPMTRLETLHLED 455

Query:   478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
             N F G+IPESL +L +LR L++  N L G +P+ L
Sbjct:   456 NQFTGAIPESLAKLPSLRTLSIKNNKLKGTIPSVL 490

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055160 AT2G14440 [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-32, P = 3.1e-32
 Identities = 143/496 (28%), Positives = 216/496 (43%)

Query:    32 CGARQNIH---SPPTNTLWFKDFAYT-GGIPANATRPSFITPPLKTLRYFP-LSEGPENC 86
             CG   N      P TN  +  D  +  GG   N    S I    +  +      EG  NC
Sbjct:    34 CGLPSNESPYIEPLTNLTYISDVNFVRGGKTGNIKNNSDIDFTSRPYKVLRYFPEGIRNC 93

Query:    87 YIINRVPKG-HYNVRIFFGLVTLTSFDHEPLFDISVEGTQIY-SLKSGWSDHDDRAFAEA 144
             Y ++ V +G  Y +R  F        +  P FD+ + G  I+ S+     D  D    E 
Sbjct:    94 YSLS-VKQGTKYLIRTLFFYGNYDGLNTSPRFDLFL-GPNIWTSVDVQKVDGGDGVIEEI 151

Query:   145 LVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGK 204
             +   R   + IC   TG   P I ++E+  +    Y    G  + ++    T     +GK
Sbjct:   152 IHVTRCNILDICLVKTGTTTPMISAIELRPLRYDTYTARTGSLKKILHFYFTN----SGK 207

Query:   205 PKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVST 264
                +V Y  D +  DR W P     Q    + +T  ++   S   N  P+ + +TA + T
Sbjct:   208 ---EVRYPEDVY--DRVWIP---HSQPEWTQINTTRNVSGFSDGYN-PPQDVIKTASIPT 258

Query:   265 DSQPDLQYTM--DVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMS 322
             +    L +T   +   +  Y+ +L+FAEI   +     R F IL+NG + +  +D +   
Sbjct:   259 NVSEPLTFTWMSESSDDETYA-YLYFAEIQQ-LKANETRQFKILVNG-VYY--IDYIPRK 313

Query:   323 GDRYTALVLNTTVAVNGRTLTVTLH--PKGGSHAIINAIEVFEIIAV-ESKTLPEEVRAL 379
              +  T L+    +   G    V L   PK      +NAIE+F +I   +S T  +EV A+
Sbjct:   314 FEAET-LITPAALKCGGGVCRVQLSKTPKSTLPPQMNAIEIFSVIQFPQSDTNTDEVIAI 372

Query:   380 QVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNG 439
             + ++++  +  R  W GDPCVP Q  W G  C     S    I  L L + GL G +   
Sbjct:   373 KNIQSTYKVS-RISWQGDPCVPIQFSWMGVSCNVIDISTPPRIISLDLSSSGLTGVITPS 431

Query:   440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
             I  L  L+ ++LS N++ G IP SL  +  L  LDLS N   G +PE L  +  L  ++L
Sbjct:   432 IQNLTMLRELDLSNNNLTGVIPPSLQNLTMLRELDLSNNNLTGEVPEFLATIKPLLVIHL 491

Query:   500 NGNTLSGRVPAALGGR 515
              GN L G VP AL  R
Sbjct:   492 RGNNLRGSVPQALQDR 507

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2028446 AT1G49100 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.9e-32, P = 6.9e-32
 Identities = 118/433 (27%), Positives = 195/433 (45%)

Query:    73 TLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSG 132
             TLRYFP  +G  NCY +N     +Y +R  F        +  P FD+ +   ++ ++   
Sbjct:    82 TLRYFP--DGERNCYNLNVTQGTNYLIRAAFLYGNYDGLNTVPNFDLFIGPNKVTTVN-- 137

Query:   133 WSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLIL 192
             ++      F E +   R   + IC   TG   P I +LE+  +    Y      G  L+L
Sbjct:   138 FNATGGGVFVEIIHMSRSTPLDICLVKTGTTTPMISTLELRPLRSDTYI--SAIGSSLLL 195

Query:   193 RTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFY 252
                  L+      ++  D +      DR W P   F     +  +T  ++  ++      
Sbjct:   196 YFRGYLNDSGVVLRYPDDVN------DRRWFP---FSYKEWKIVTTTLNVNTSNGFD--L 244

Query:   253 PEALYQTALVSTDSQPDLQYTMDV-DPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDI 311
             P+    +A    +     ++   + D    + I+LHFAE+  T+     R F++L+NG +
Sbjct:   245 PQGAMASAATRVNDNGTWEFPWSLEDSTTRFHIYLHFAELQ-TLLANETREFNVLLNGKV 303

Query:   312 AFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHP-KGGSHAIINAIEVFEIIAV-ES 369
              +       +S D  +    +T     G  L   +   K     +INAIE+F ++   +S
Sbjct:   304 YYGPYSPKMLSIDTMSPQPDSTLTCKGGSCLLQLVKTTKSTLPPLINAIELFTVVEFPQS 363

Query:   370 KTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDN 429
             +T  +EV A++ ++ +  L  R  W GDPCVP+Q  W+G  C    +S    I  L L +
Sbjct:   364 ETNQDEVIAIKKIQLTYGLS-RINWQGDPCVPEQFLWAGLKCSNINSSTPPTITFLNLSS 422

Query:   430 QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLG 489
              GL G +   I  L HLQ ++LS N + G +P  L  I SL +++LS N F+G +P+ L 
Sbjct:   423 SGLTGIISPSIQNLTHLQELDLSNNDLTGDVPEFLADIKSLLIINLSGNNFSGQLPQKLI 482

Query:   490 QLTALRRLNLNGN 502
                 L+ LN+ GN
Sbjct:   483 DKKRLK-LNVEGN 494

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2017572 AT1G51790 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 5.7e-30, P = 5.7e-30
 Identities = 139/493 (28%), Positives = 229/493 (46%)

Query:    11 VFCSAL-NSSSARHAPFAMRISCGAR-QNIHSPPTNT--LWFKDFAYTGGIPANATRPSF 66
             + C AL N + A+     + I CG + +N     T+T   +  D +YT    +    P  
Sbjct:    12 ICCVALLNLAIAQDQSGFISIDCGLQPENSSYTETSTDIKYVSDSSYTDTGTSYFVAPEN 71

Query:    67 ---ITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEG 123
                +   + ++R FP  EG  NCY I       Y +R  F      S +  P FD+ + G
Sbjct:    72 RQNMKQSMWSVRSFP--EGIRNCYTIAVNSSTKYLIRADFMYGNYDSRNEIPGFDLHL-G 128

Query:   124 TQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFG 183
                +      S     +  E + ++   T+ +C  +TG+G P I  LE+ Q+ + +Y   
Sbjct:   129 PNKWDTVELVSPLQTVS-KEIIYYVLTDTIQVCLVNTGNGTPFISVLELRQLPNSSY--- 184

Query:   184 QGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIK 243
                 E L L    RL  G+      V Y  D +  DR W P      N  +  S  S+  
Sbjct:   185 AAQSESLQL--FQRLDFGS-TTNLTVRYPNDVF--DRIWFPATP---NGTKPLSDPSTSL 236

Query:   244 QASKAPNF-YPEALYQTALVSTDSQP--DLQYTMDVDPNRNYSIWLHFAEIDNTITG-VG 299
              ++   NF  P+ + +T +V  + +   D  +  D DP+  +  +L+F E+    +G V 
Sbjct:   237 TSNSTGNFRLPQVVMRTGIVPDNPRGFVDFGWIPD-DPSLEFFFYLYFTELQQPNSGTVE 295

Query:   300 QRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHA--IIN 357
              R F IL+NG  +F G     +S + +  L L T+  +   +   +L     S    +IN
Sbjct:   296 TREFVILLNGK-SF-GEP---LSLNYFRTLALFTSNPLKAESFQFSLRQTQSSSLPPLIN 350

Query:   358 AIEVFEIIAV-ESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRT 416
             A+E + +  + +S T P ++ A++ +K++  +     W GD CVPQ + W G +C F+ T
Sbjct:   351 AMETYFVNKLPQSSTDPNDLSAMRNIKSAYKVKRN--WEGDVCVPQAYTWEGLNCSFNGT 408

Query:   417 SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDL 475
             +   VI  L L + GL G + + IS+L  LQ ++LS N++ G A+P+ L  +  L VL L
Sbjct:   409 NMPRVI-ALNLSSAGLTGEITSDISRLSQLQILDLSNNNLSGPAVPAFLAQLQFLRVLHL 467

Query:   476 SYNFFNGSIPESL 488
             + N  +G IP SL
Sbjct:   468 ANNQLSGPIPSSL 480

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2195850 AT1G51860 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 5.8e-30, P = 5.8e-30
 Identities = 131/515 (25%), Positives = 239/515 (46%)

Query:     1 MLRFH-FLWLLVFC-SALNSSSARHAPFAMRISCGA--RQNIHSPPTNTLWFK---DFAY 53
             M   H FL LL+   + L S  A++    + + CG   ++  ++  +  + +K   D+  
Sbjct:     1 MKSLHWFLHLLIIAFTVLRSVEAQNQAGFISLDCGLVPKETTYTEKSTNITYKSDVDYID 60

Query:    54 TGGI-PANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFD 112
             +G +   N    +     +  +R FP+  G  NCY +N      Y +R  F        +
Sbjct:    61 SGLVGKINDAYKTQFQQQVWAVRSFPV--GQRNCYNVNLTANNKYLIRGTFVYGNYDGLN 118

Query:   113 HEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEI 172
               P FD+ +   +  S+K       + +  E +  +   ++ +C   TG   P I SLE+
Sbjct:   119 QFPSFDLHIGPNKWSSVKI--LGVTNTSMHEIIHVVPQDSLEVCLVKTGPTTPFISSLEV 176

Query:   173 LQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGD-HWGGDRFWNPILSFGQN 231
               +++++Y    G    L+L    R+   +    F + Y  D H   DR WN   SF  +
Sbjct:   177 RPLNNESYLTQSG---SLML--FARVYFPSSSSSF-IRYDEDIH---DRVWN---SFTDD 224

Query:   232 ADQRRSTESSIKQASKAPNFYPEALYQTALVSTD-SQPDLQY-TMDVDPNRNYSIWLHFA 289
                  ST+  I  ++      P+++ +TA V  + S+P L + T+D +  ++Y +++HFA
Sbjct:   225 ETVWISTDLPIDTSNSYD--MPQSVMKTAAVPKNASEPWLLWWTLDENTAQSY-VYMHFA 281

Query:   290 EIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPK 349
             E+ N +T    R F+I  NG + +     ++      + +     V+ +      T    
Sbjct:   282 EVQN-LTANETREFNITYNGGLRW--FSYLRPPNLSISTIFNPRAVSSSNGIFNFTFAMT 338

Query:   350 GGSHA--IINAIEVFEIIAV-ESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPW 406
             G S    ++NA+E++ ++ + + +T  +EV A+  +K +  L  +  W GDPC PQ + W
Sbjct:   339 GNSTLPPLLNALEIYTVVDILQLETNKDEVSAMMNIKETYGLSKKISWQGDPCAPQLYRW 398

Query:   407 SGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGT 466
              G +C +  +    +I  L L+   L G + + ISKL  L  ++LS N + G IP+    
Sbjct:   399 EGLNCSYPDSEGSRIIS-LNLNGSELTGSITSDISKLTLLTVLDLSNNDLSGDIPTFFAE 457

Query:   467 IASLEVLDLSYN-FFN-GSIPESLGQLTALRRLNL 499
             + SL++++LS N   N  +IP+SL Q    + L L
Sbjct:   458 MKSLKLINLSGNPNLNLTAIPDSLQQRVNSKSLTL 492

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2078186 AT3G46340 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 103/345 (29%), Positives = 169/345 (48%)

Query:   149 RDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFD 208
             R  ++ +C   T    P +  LE+  +D+ +Y  G G      L+T  R    N +    
Sbjct:   157 RSNSLDVCLVKTDTSTPFLSLLELRPLDNDSYLTGSG-----SLKTFRRYYLSNSESV-- 209

Query:   209 VDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALV-STDSQ 267
             + Y  D    DR W P  +F     Q  +T   +K  +      P+ +  TA + + DS 
Sbjct:   210 IAYPEDV--KDRIWEP--TFDSEWKQIWTT---LKPNNSNGYLVPKNVLMTAAIPANDSA 262

Query:   268 PDLQYTMDVD-PNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRY 326
             P  ++T ++D P     ++LHF+E+ + +     R FDIL +G++A++      ++    
Sbjct:   263 P-FRFTEELDSPTDELYVYLHFSEVQS-LQANESREFDILWSGEVAYEAFIPEYLN---I 317

Query:   327 TALVLNTTVAVNGRTLTVTL-HPKGGSHA-IINAIEVFEIIAV-ESKTLPEEVRALQVLK 383
             T +  NT V   G    + L   K  +H  +INAIE + ++   + +T   +V A++ +K
Sbjct:   318 TTIQTNTPVTCPGGKCNLELKRTKNSTHPPLINAIEFYTVVNFPQLETNETDVVAIKDIK 377

Query:   384 NSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKL 443
              + +L +R  W GDPCVPQ+  W G DC          I  L L + GL G +  GI  L
Sbjct:   378 ATYEL-NRITWQGDPCVPQKFIWEGLDCNSKDALTLPRITSLNLSSTGLTGNIAAGIQNL 436

Query:   444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
              HL  ++LS N++ G +P  L ++ SL  ++LS N  NGSIP++L
Sbjct:   437 THLDKLDLSNNNLTGGVPEFLASMKSLSFINLSKNNLNGSIPQAL 481

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2059804 AT2G04300 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 2.8e-29, P = 2.8e-29
 Identities = 119/440 (27%), Positives = 202/440 (45%)

Query:    70 PLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYS- 128
             P+  LRYFP  EG  NCY +N     +Y +R  F        + E  FD+ + G  +++ 
Sbjct:    81 PILQLRYFP--EGVRNCYTLNVTLGTNYLIRASFVYGNYDGLNKELEFDLYL-GPNLWAN 137

Query:   129 LKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGE 188
             + +     +     E +   +   + +C   TG   P I SLE+  + +  Y    G   
Sbjct:   138 VNTAVYLMNGVTTEEIIHSTKSKVLQVCLIKTGESIPIINSLELRPLINDTYNTQSG-SL 196

Query:   189 GLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKA 248
               + R     S      +  + Y  D    DR W P   F ++A    +T  ++  +   
Sbjct:   197 KYLFRNYFSTS------RRIIRYPNDV--NDRHWYPF--FDEDAWTELTTNLNVNSS--- 243

Query:   249 PNFYPEALYQTALVST--DSQPDLQYTMDVDPN--RNYSIWLHFAEIDNTITGVGQRVFD 304
              N Y    +  A  ST         +T  + P+  + YS ++HFA+I  T+     R FD
Sbjct:   244 -NGYDPPKFVMASASTPISKNAPFNFTWSLIPSTAKFYS-YMHFADIQ-TLQANETREFD 300

Query:   305 ILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHP-KGGSHAIINAIEVFE 363
             +++NG++A +       +    T   +   +   G+ +   L   K     + +A+EVF 
Sbjct:   301 MMLNGNLALERYRPKTFATG--TIYFIKPQICEGGQCIIELLKTSKSTLPPLCSALEVFT 358

Query:   364 IIAV-ESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVI 422
             +I   E +T  ++V A++ ++N+  +  +  W GDPCVP++  W G +C     S    I
Sbjct:   359 VIDFPELETNQDDVIAIKNIQNTYGVS-KTSWQGDPCVPKRFMWDGLNCNNSYISTPPTI 417

Query:   423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG 482
               L L +  L G + + I  L HLQ+++LS N++ G +P  L  + SL V++LS N  +G
Sbjct:   418 TFLNLSSSHLTGIIASAIQNLTHLQNLDLSNNNLTGGVPEFLAGLKSLLVINLSGNNLSG 477

Query:   483 SIPESLGQLTALRRLNLNGN 502
             S+P++L Q   L+ LNL GN
Sbjct:   478 SVPQTLLQKKGLK-LNLEGN 496

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	624
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.0
pfam12819	335	pfam12819, Malectin_like, Carbohydrate-binding pro	1e-71
pfam11721	164	pfam11721, Malectin, Di-glucose binding within end	7e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 1156 bits (2991), Expect = 0.0
 Identities = 491/621 (79%), Positives = 539/621 (86%), Gaps = 3/621 (0%)

Query: 7   LWLLVFCS--ALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRP 64
           LWLL   +  A+ +S A   PF MRISCGAR N+ + PTNTLW+KDFAYTGGIPANATRP
Sbjct: 3   LWLLAASALLAVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRP 62

Query: 65  SFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGT 124
           SFI PPLKTLRYFPLS+GPENCY INRVPKGHY+VR+FFGLV   +FD EPLFD+SVEGT
Sbjct: 63  SFIAPPLKTLRYFPLSDGPENCYNINRVPKGHYSVRVFFGLVAEPNFDSEPLFDVSVEGT 122

Query: 125 QIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQ 184
           QI SLKSGWS HD++ FAEALVFL DG+ SICFHSTGHGDPAILS+EILQVDDKAY FG 
Sbjct: 123 QISSLKSGWSSHDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEILQVDDKAYNFGP 182

Query: 185 GWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQ 244
            WG+G+ILRTA RLSCG GK KFD DYSGDHWGGDRFWN + +FG  +DQ  STE+ IK+
Sbjct: 183 SWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKK 242

Query: 245 ASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFD 304
           AS APNFYPE+LYQ+ALVSTD+QPDL YTMDVDPNRNYS+WLHFAEIDN+IT  G+RVFD
Sbjct: 243 ASNAPNFYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFD 302

Query: 305 ILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEI 364
           +LINGD AF+ VD+VKMSG+RYTALVLN TVAV+GRTLT+ L PK G+HAIINAIEVFEI
Sbjct: 303 VLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTHAIINAIEVFEI 362

Query: 365 IAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDG 424
           I  ESKTL EEV ALQ LK+SL LP RFGWNGDPCVPQQHPWSGADCQFD T  KW IDG
Sbjct: 363 ITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDG 422

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           LGLDNQGLRGF+PN ISKLRHLQSINLSGNSIRG IP SLG+I SLEVLDLSYN FNGSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLS 544
           PESLGQLT+LR LNLNGN+LSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLS
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLS 542

Query: 545 TSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILRAQQIAARGAPYAKARTHLSHDIQLAR 604
             AKIGI FGV      L+IC+M WWKRRQNILRAQ+IAAR APYAKARTH S D+Q+ R
Sbjct: 543 VGAKIGIAFGVSVAFLFLVICAMCWWKRRQNILRAQRIAAREAPYAKARTHFSRDVQMTR 602

Query: 605 HY-NHHGNARTAAENGPSLLS 624
           H+  +HG+ARTAAENGPSLLS
Sbjct: 603 HHRQNHGSARTAAENGPSLLS 623

Length = 623

>gnl|CDD|221790 pfam12819, Malectin_like, Carbohydrate-binding protein of the ER

 Score =  234 bits (598), Expect = 1e-71
 Identities = 106/351 (30%), Positives = 153/351 (43%), Gaps = 32/351 (9%)

Query: 30  ISCGARQNIH--SPPTNTLWFKDFAYT-GGIPANAT---RPSFITPPLKTLRYFPLSEGP 83
           I CG   N     P T   W  D  +   G   N +     SF++ P KTLR FP  +G 
Sbjct: 1   IDCGLPSNESYTDPSTGITWVSDAGFIDTGKSGNISKENSSSFLSKPYKTLRSFP--DGK 58

Query: 84  ENCYIINRVP--KGHYNVRIFF---GLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDD 138
            NCY +   P     Y +R  F       L S    P FD+ +      ++       D 
Sbjct: 59  RNCYTLPVTPGKGTKYLIRATFLYGNYDGLNSVSSPPSFDLYLGVNLWTTVNLSNDSGDS 118

Query: 139 RAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDKAYYFGQGWGEGLILRTATRL 198
                 +   +  T+S+C  +TG G P I +LE+  + D  Y      G    L+   RL
Sbjct: 119 VVKEYIIHVTKSDTLSVCLVNTGTGTPFISALELRPLPDSLYPSS---GGSQALKLVARL 175

Query: 199 SCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSI-KQASKAPNFYPEALY 257
           + G  +    + Y  D    DR W P   F      + ST  S+   ++ AP   P A+ 
Sbjct: 176 NFGGSEG--TIRYPDDV--YDRIWEP--FFSSPGWSQISTSLSVDISSNNAPYIPPSAVL 229

Query: 258 QTALVSTDSQPDLQYTMD-VDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGV 316
           QTA+  T++   L +T D VDPN  Y ++LHFAEI +       R FDI ING   +  V
Sbjct: 230 QTAVTPTNASAPLNFTWDLVDPNFEYYVYLHFAEIQSL----ETREFDIYINGKTVYGDV 285

Query: 317 DVVKMSGDRYTALVLNTTVAVNGRT-LTVTLHPKGGS--HAIINAIEVFEI 364
               +  D   AL L+  V V+G   L ++L P  GS    ++NA+E+F++
Sbjct: 286 SPKYLGTD-TGALYLDFPVNVSGGGLLNISLVPTSGSTLPPLLNALEIFKV 335

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. Length = 335

>gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum

 Score = 78.1 bits (193), Expect = 7e-17
 Identities = 42/166 (25%), Positives = 64/166 (38%), Gaps = 19/166 (11%)

Query: 197 RLSCGNGKP--KFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPE 254
            ++CG  +      + Y  D +      +  +S    +     T              PE
Sbjct: 4   AINCGGPEHTDSDGITYEADTYFTGGSADYYVSDTNGSSSIAGTT------------DPE 51

Query: 255 ALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQ 314
            LYQT   S  S     Y +    N NY++ LHFAEI     G+G+RVFD+ + G +  +
Sbjct: 52  -LYQTERYSPSS---FSYYIPCLENGNYTVILHFAEIYFGEDGLGRRVFDVYVQGKLVLK 107

Query: 315 GVDVVKMSG-DRYTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAI 359
             D+V  +G    TA      V V   TL +  +  G    +I   
Sbjct: 108 DFDIVAEAGGKGKTAHKEYIPVTVTDGTLEIHFYWAGKGTLLIPFR 153

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. Length = 164

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.6 bits (178), Expect = 3e-13
 Identities = 33/93 (35%), Positives = 48/93 (51%)

Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           ++ L L      G +P  +  L  L  + LS N + G IP  L +   L  LDLS+N  +
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 482 GSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           G IP S  ++  L +L+L+ N LSG +P  LG 
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.2 bits (177), Expect = 5e-13
 Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N    G +P G   + +L++++LS N + G IP+ +G+ +SL+VLDL  N   G I
Sbjct: 123 LNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P SL  LT+L  L L  N L G++P  LG
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELG 209

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.8 bits (176), Expect = 6e-13
 Identities = 38/90 (42%), Positives = 52/90 (57%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N  L G +PN I     L+ ++L GN + G IP+SL  + SLE L L+ N   G I
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           P  LGQ+ +L+ + L  N LSG +P  +GG
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.6 bits (173), Expect = 1e-12
 Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 1/112 (0%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  L G +P  + +++ L+ I L  N++ G IP  +G + SL  LDL YN   G I
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL 536
           P SLG L  L+ L L  N LSG +P ++   L    S + +DN+    IP L
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPEL 303

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.3 bits (172), Expect = 2e-12
 Identities = 35/89 (39%), Positives = 53/89 (59%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L G +PN ++ L  L+ + L+ N + G IP  LG + SL+ + L YN  +G I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P  +G LT+L  L+L  N L+G +P++LG
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.0 bits (166), Expect = 1e-11
 Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 17/145 (11%)

Query: 374 EEVRALQVLKNSLDLP--HRFGWN--GDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDN 429
           EE+  L   K+S++ P  +   WN   D C+     W G  C  + +S    +  + L  
Sbjct: 29  EELELLLSFKSSINDPLKYLSNWNSSADVCL-----WQGITC--NNSSR---VVSIDLSG 78

Query: 430 QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA-SLEVLDLSYNFFNGSIPESL 488
           + + G + + I +L ++Q+INLS N + G IP  + T + SL  L+LS N F GSIP   
Sbjct: 79  KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-- 136

Query: 489 GQLTALRRLNLNGNTLSGRVPAALG 513
           G +  L  L+L+ N LSG +P  +G
Sbjct: 137 GSIPNLETLDLSNNMLSGEIPNDIG 161

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L G +P+ +S  + L S++LS N + G IP+S   +  L  LDLS N  +G I
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCG---IPGLRAC 539
           P++LG + +L ++N++ N L G +P+   G  L   +     N  LCG     GL  C
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLPST--GAFLAINASAVAGNIDLCGGDTTSGLPPC 619

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 4e-11
 Identities = 34/84 (40%), Positives = 46/84 (54%)

Query: 432 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
           L G +P  I  L+ L S++LS NS+ G IP  +  + +LE+L L  N F G IP +L  L
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Query: 492 TALRRLNLNGNTLSGRVPAALGGR 515
             L+ L L  N  SG +P  LG  
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKH 355

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 8e-10
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + N  L+G + +    +  LQ ++L+ N   G +P S G+   LE LDLS N F+G++
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAV 491

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAAL 512
           P  LG L+ L +L L+ N LSG +P  L
Sbjct: 492 PRKLGSLSELMQLKLSENKLSGEIPDEL 519

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 35/89 (39%), Positives = 46/89 (51%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +    G +P  ++ L  LQ + L  N   G IP +LG   +L VLDLS N   G I
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           PE L     L +L L  N+L G +P +LG
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 28/120 (23%)

Query: 417 SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEV---- 472
           S KW+   LG +N  L G +P  I  L  L  ++L  N++ G IPSSLG + +L+     
Sbjct: 213 SLKWIY--LGYNN--LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268

Query: 473 --------------------LDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
                               LDLS N  +G IPE + QL  L  L+L  N  +G++P AL
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 32/88 (36%), Positives = 54/88 (61%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  L G +P  + +L++L+ ++L  N+  G IP +L ++  L+VL L  N F+G I
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAAL 512
           P++LG+   L  L+L+ N L+G +P  L
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGL 376

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
           L +    G LP+  +KL  +  +++S N+++G I S    + SL++L L+ N F G +P+
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALG 513
           S G    L  L+L+ N  SG VP  LG
Sbjct: 471 SFGS-KRLENLDLSRNQFSGAVPRKLG 496

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query: 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           +L+S++LS N +      +   + +L+VLDLS N      PE+   L +LR L+L+GN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 29/78 (37%), Positives = 43/78 (55%)

Query: 432 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
             G +P  + K  +L  ++LS N++ G IP  L +  +L  L L  N   G IP+SLG  
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 492 TALRRLNLNGNTLSGRVP 509
            +LRR+ L  N+ SG +P
Sbjct: 404 RSLRRVRLQDNSFSGELP 421

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 6e-07
 Identities = 29/84 (34%), Positives = 43/84 (51%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L G +P G+    +L  + L  NS+ G IP SLG   SL  + L  N F+G +
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 485 PESLGQLTALRRLNLNGNTLSGRV 508
           P    +L  +  L+++ N L GR+
Sbjct: 421 PSEFTKLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP  I  L  L+ ++LS NSI   + SSL  + +L  L+LS N     +PES+G L+ L 
Sbjct: 201 LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE 258

Query: 496 RLNLNGNTLS 505
            L+L+ N +S
Sbjct: 259 TLDLSNNQIS 268

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)

Query: 436 LPNGISKLR--------HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
             N I+ +         +L+ ++LS N I  ++PS L  + +L+ LDLS+N  +  +P+ 
Sbjct: 124 DNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKL 181

Query: 488 LGQLTALRRLNLNGNTLS 505
           L  L+ L  L+L+GN +S
Sbjct: 182 LSNLSNLNNLDLSGNKIS 199

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478
           L L N  L          L +L+ ++LSGN++    P +   + SL  LDLS N
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP+ +  L +L++++LS N +   +P  L  +++L  LDLS N  +  +P  +  L+AL 
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE 212

Query: 496 RLNLNGN 502
            L+L+ N
Sbjct: 213 ELDLSNN 219

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 469 SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
           +LE LDLS N     +P  L  L  L  L+L+GN ++
Sbjct: 2   NLETLDLSNNQIT-DLPP-LSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	624
PLN03150	623	hypothetical protein; Provisional	100.0
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	100.0
PLN03150	623	hypothetical protein; Provisional	99.85
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.81
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.5
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.48
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.46
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.91
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	98.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.74
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.67
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.55
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.54
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.54
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.5
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.48
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.43
KOG3593	355	consensus Predicted receptor-like serine/threonine	98.4
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.35
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.26
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.19
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.15
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.94
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.91
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.82
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.82
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.82
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.73
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.71
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.66
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.63
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.57
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.54
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.51
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.25
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.06
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.6
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.48
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.3
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.29
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	96.27
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.96
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.61
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.34
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.59
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.56
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.2
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.17
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.0
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.61
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.14
PRK15386	426	type III secretion protein GogB; Provisional	92.14
PRK15386	426	type III secretion protein GogB; Provisional	91.31
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	90.22
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.05
KOG2123	388	consensus Uncharacterized conserved protein [Funct	89.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	89.65
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.82
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	88.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	88.44
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.12
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	86.34
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	86.27
smart00370	26	LRR Leucine-rich repeats, outliers.	85.6
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.6
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	85.37
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.34
smart00370	26	LRR Leucine-rich repeats, outliers.	84.34
KOG3593	355	consensus Predicted receptor-like serine/threonine	84.3
KOG2123	388	consensus Uncharacterized conserved protein [Funct	83.61
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	83.52
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	82.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	82.21

>PLN03150 hypothetical protein; Provisional

Probab=100.00  E-value=3.1e-107  Score=916.46  Aligned_cols=610  Identities=80%  Similarity=1.310  Sum_probs=515.9

Q ss_pred             HhhcccccCCCCcEEEccCCCCCCCCCCCCceeeccCCccCCcccccCCCCCCCCCcceeeeecCCCCCCceEEeecCCC
Q 006940           15 ALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPK   94 (624)
Q Consensus        15 ~~~~~~~~~~~~~~~I~CG~~~~~~~~~~~~~w~~D~~~~~g~~~~~~~~~~~~~~y~t~R~F~~~~~~~~~Y~~~~~~~   94 (624)
                      ++.++.++.++++++||||+++++++|.+||+|++|..+++|.......+....++|+|+|+||...|+++||+||++++
T Consensus        13 ~~~~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~~~~~~~~~~~~~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~   92 (623)
T PLN03150         13 AVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRPSFIAPPLKTLRYFPLSDGPENCYNINRVPK   92 (623)
T ss_pred             HhhcccccCCCccEEEeCCCCCCcccCCCCCEEcCCcccccCccccccCcccccchhhccccCCcccccccceEeeecCC
Confidence            33444455678999999999987545678999999988776555544444456688999999997678899999999999


Q ss_pred             ceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEEeecCCCCcccceeEEEEEEeeCCeEEEEEeeCCCCCCcEeeEEEEE
Q 006940           95 GHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQ  174 (624)
Q Consensus        95 g~y~vRl~F~~~~y~~~~~~~~Fdv~~~~~~~~~v~~~~~~~~~~~~~E~~~~~~~~~l~i~f~~~~~~~pfIsaIEl~~  174 (624)
                      |+|+||+||+||+||+.++.|.|||++|++.|.+|+.+|+..+..++||++++++++.++|||++++.+.||||+||||+
T Consensus        93 g~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~iEv~~  172 (623)
T PLN03150         93 GHYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSSHDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEILQ  172 (623)
T ss_pred             CcEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCcccCCCcEEEEEEEEecCCcEEEEEecCCCCCCceeEEEEEE
Confidence            99999999999999998888999999999999999998876677899999999999999999999988999999999999


Q ss_pred             cCCcccccCCCCccceeEEEEEeecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCccccccccceeccCCCCCCChH
Q 006940          175 VDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPE  254 (624)
Q Consensus       175 l~~~~y~~~~~~~~~~~l~~~~Rin~Gg~~~~~~~~~~~D~~~~dR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~  254 (624)
                      +|+.+|..+.+...+.+|+++||+||||....+.+||+||+|++||+|.+|..|....+..+++...|+.+.+.++.+|+
T Consensus       173 l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~  252 (623)
T PLN03150        173 VDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPE  252 (623)
T ss_pred             cCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChH
Confidence            99999975432234678999999999998776678999999999999999876554556667777777765566777899


Q ss_pred             HHHHHhhhcCCCCCccEEEeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEECCeecccCCceeeecCCceeeEEEEEE
Q 006940          255 ALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTT  334 (624)
Q Consensus       255 ~Vy~Tar~~~~~~~~lt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~  334 (624)
                      .||||||++.+...+++|.|++++++.|+|||||||++......++|+|||+|||+.+++++|+...+|+.+.++++++.
T Consensus       253 ~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~  332 (623)
T PLN03150        253 SLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKT  332 (623)
T ss_pred             HHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeE
Confidence            99999999876557899999999999999999999997545567899999999999999999999888877788999988


Q ss_pred             EeeeCeeEEEEeCCCCCchHHHHHHhhhhhhhhcccCChHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 006940          335 VAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFD  414 (624)
Q Consensus       335 ~~~~~~~l~i~~~~~~~~~p~lnaiEi~~~~~~~~~~~~~~~~aL~~~k~~~~~~~~~~W~~~~c~~~~~~w~gv~C~~~  414 (624)
                      +.++++.++|+|+|..+++|+||||||+++...+..+.+.|+.||+.+|..+..+...+|+++||.|..++|.|+.|..+
T Consensus       333 v~~~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv~C~~~  412 (623)
T PLN03150        333 VAVSGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFD  412 (623)
T ss_pred             EeecCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcccccccceeecc
Confidence            87777889999999988889999999999998888889999999999999987664458999999988889999999754


Q ss_pred             CCCceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCC
Q 006940          415 RTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL  494 (624)
Q Consensus       415 ~~~~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L  494 (624)
                      .......++.|+|++|+|+|.+|..++.|++|+.|+|++|+|.|.+|..++.|++|+.|||++|+|+|.+|+.++++++|
T Consensus       413 ~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L  492 (623)
T PLN03150        413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL  492 (623)
T ss_pred             CCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence            43334579999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCCCCCCCCCCCCCCceEEEEhhhHHHHHHHHHHHHHHHHHHHh
Q 006940          495 RRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQ  574 (624)
Q Consensus       495 ~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~  574 (624)
                      +.|+|++|+|+|.+|..+.....++..+++.+|+.+|+.|....|..+.....++++++++++++++++++.+++++||+
T Consensus       493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~r~  572 (623)
T PLN03150        493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSVGAKIGIAFGVSVAFLFLVICAMCWWKRRQ  572 (623)
T ss_pred             CEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcccCCCceEEEEEhHHHHHHHHHHHHHhhheeehh
Confidence            99999999999999999887656778899999999999988888976656666677666666555554555555555555


Q ss_pred             hHHHHhhhhccCCcchhhccccchhhhhhcccC-CCCCccccccCCCCCCC
Q 006940          575 NILRAQQIAARGAPYAKARTHLSHDIQLARHYN-HHGNARTAAENGPSLLS  624 (624)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~r~~~~~ei~~at~~f-~~~~~~~~~~~~~~~~~  624 (624)
                      +..+.+....+..+..+.|...-+++|.|..+. +++.+++++|+||.+++
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (623)
T PLN03150        573 NILRAQRIAAREAPYAKARTHFSRDVQMTRHHRQNHGSARTAAENGPSLLS  623 (623)
T ss_pred             hhcchhhhhcccCcchhcccceeeeccchhhhccccccccccccCCCcCCC
Confidence            443332212333444455555677888887664 67889999999999875

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=100.00  E-value=2.6e-63  Score=521.33  Aligned_cols=323  Identities=29%  Similarity=0.480  Sum_probs=255.8

Q ss_pred             EccCCCCCC--C-CCCCCceeeccCCccC-CcccccC-----CCCCCCCCcceeeeecCCCCCCceEEeecC--CCceeE
Q 006940           30 ISCGARQNI--H-SPPTNTLWFKDFAYTG-GIPANAT-----RPSFITPPLKTLRYFPLSEGPENCYIINRV--PKGHYN   98 (624)
Q Consensus        30 I~CG~~~~~--~-~~~~~~~w~~D~~~~~-g~~~~~~-----~~~~~~~~y~t~R~F~~~~~~~~~Y~~~~~--~~g~y~   98 (624)
                      ||||++.+.  + ++.+||+|++|..|+. |.+..+.     ......++|+|||+||+  |.|+||+||+.  ++++||
T Consensus         1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~~--g~r~cY~l~~~~~~~~~yl   78 (347)
T PF12819_consen    1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFPE--GSRNCYTLPVTPPGGGKYL   78 (347)
T ss_pred             CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcCC--CCccEEEeeccCCCCceEE
Confidence            799999763  2 3468999999998874 5544441     12345688999999994  77899999987  456999


Q ss_pred             EEEEEecccCCCCC-----CCCcEEEEEcCeEEEEeecCCCCcccceeEEEEEEee-CCeEEEEEeeCCCCC-CcEeeEE
Q 006940           99 VRIFFGLVTLTSFD-----HEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLR-DGTVSICFHSTGHGD-PAILSLE  171 (624)
Q Consensus        99 vRl~F~~~~y~~~~-----~~~~Fdv~~~~~~~~~v~~~~~~~~~~~~~E~~~~~~-~~~l~i~f~~~~~~~-pfIsaIE  171 (624)
                      |||||+|||||+++     +++.|||++|++.|.+|.... ....+++||+++++. ++.|+|||+|++.|. |||||||
T Consensus        79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~-~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsaiE  157 (347)
T PF12819_consen   79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN-SPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISAIE  157 (347)
T ss_pred             EEEEeccccccccccccccCCcceEEEECCceeEEEEecC-CCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeEEE
Confidence            99999999999874     256799999999999998533 334679999888887 799999999999887 9999999


Q ss_pred             EEEcCCcccccCCCCccceeEEEEEeecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcccccccccee-ccCCCCC
Q 006940          172 ILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIK-QASKAPN  250 (624)
Q Consensus       172 l~~l~~~~y~~~~~~~~~~~l~~~~Rin~Gg~~~~~~~~~~~D~~~~dR~W~~~~~~~~~~~~~~~t~~~i~-~~~~~~~  250 (624)
                      |||||+.+|+... ...+.+|++++|+|+||...  .+||++|++  ||+|.++.  ....|..+++...|. ...+.++
T Consensus       158 l~~lp~~ly~~~~-~~~s~~L~~~~R~n~G~~~~--~iryp~D~~--dR~W~~~~--~~~~~~~ist~~~i~~~~~~~~~  230 (347)
T PF12819_consen  158 LRPLPDSLYPDTD-ANSSQALETVYRLNVGGSSS--FIRYPDDTY--DRIWQPYS--SSPGWSNISTTSNININSSNNPY  230 (347)
T ss_pred             EEECCccceeccc-cCCCceeEEEEeecCCCccc--ccCCCCCcc--eeeccccc--cCccccccccceeeecccCCccC
Confidence            9999999995321 14577899999999998742  289999998  99999763  135566777766665 3445677


Q ss_pred             CChHHHHHHhhhcCCCC--CccEEEeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEECCeecccCCceeeecCCceee
Q 006940          251 FYPEALYQTALVSTDSQ--PDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTA  328 (624)
Q Consensus       251 ~~P~~Vy~Tar~~~~~~--~~lt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~  328 (624)
                      .+|.+|||||+++.+.+  .+++|.| ++++..|+||||||||+......++|+|+|||||+.+.+++++.. .+....+
T Consensus       231 ~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~-~~~~~~~  308 (347)
T PF12819_consen  231 DAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPY-LGADTVP  308 (347)
T ss_pred             cChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCccc-ccCcceE
Confidence            89999999999987664  6899999 999999999999999987556667999999999999887554422 2222344


Q ss_pred             EEEEEEEeeeC-eeEEEEeCCCCCc--hHHHHHHhhhhh
Q 006940          329 LVLNTTVAVNG-RTLTVTLHPKGGS--HAIINAIEVFEI  364 (624)
Q Consensus       329 ~~~~~~~~~~~-~~l~i~~~~~~~~--~p~lnaiEi~~~  364 (624)
                      ++..+.+.+.+ +.++|++.|+.++  +|+|||+|||++
T Consensus       309 ~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v  347 (347)
T PF12819_consen  309 YYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV  347 (347)
T ss_pred             eecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence            55666665543 4789999988765  899999999975

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>PLN03150 hypothetical protein; Provisional

Probab=99.85  E-value=2.7e-20  Score=210.68  Aligned_cols=89  Identities=31%  Similarity=0.575  Sum_probs=82.9

Q ss_pred             ccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEec
Q 006940          445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNF  524 (624)
Q Consensus       445 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l  524 (624)
                      .++.|+|++|.++|.+|..++.|++|+.|+|++|.|.|.+|..++.+++|+.|+|++|+++|.+|+.+.. +.+|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc-CCCCCEEEC
Confidence            3778999999999999999999999999999999999999999999999999999999999999999886 789999999


Q ss_pred             cCCCCCCCCC
Q 006940          525 TDNAGLCGIP  534 (624)
Q Consensus       525 ~~N~~lc~~~  534 (624)
                      ++|...+..|
T Consensus       498 s~N~l~g~iP  507 (623)
T PLN03150        498 NGNSLSGRVP  507 (623)
T ss_pred             cCCcccccCC
Confidence            9998765543

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.81  E-value=8.3e-21  Score=180.03  Aligned_cols=142  Identities=26%  Similarity=0.401  Sum_probs=86.7

Q ss_pred             EEEeecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCccccccc--c--ceeccCCCCCCChHHHHHHhhhcCCCCCc
Q 006940          194 TATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTE--S--SIKQASKAPNFYPEALYQTALVSTDSQPD  269 (624)
Q Consensus       194 ~~~Rin~Gg~~~~~~~~~~~D~~~~dR~W~~~~~~~~~~~~~~~t~--~--~i~~~~~~~~~~P~~Vy~Tar~~~~~~~~  269 (624)
                      .++||||||+..       .|.-  +..|.+|..+....+......  .  ............+..+|||+|+...   +
T Consensus         1 ~~~~IN~Gg~~~-------~~~~--g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~---~   68 (174)
T PF11721_consen    1 VVLRINAGGPAY-------TDSS--GIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS---S   68 (174)
T ss_dssp             EEEEEEETSSSE-------EETT--TEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS---S
T ss_pred             CEEEEECCCCcc-------cCCC--CCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC---c
Confidence            378999999752       2222  788888875433333111000  0  0001111223346789999999754   3


Q ss_pred             cEEEeecCCCCcEEEEEEEEeecCCC----CCCceEEEEEEECCeecccCCceeeecCCceeeEEEEE-EEeeeCeeEEE
Q 006940          270 LQYTMDVDPNRNYSIWLHFAEIDNTI----TGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNT-TVAVNGRTLTV  344 (624)
Q Consensus       270 lt~~~~v~~~~~y~vrLhFaEi~~~~----~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~-~~~~~~~~l~i  344 (624)
                      |+|.+|+.++|.|.|+|||||++...    ...++|+|||+|||++++++|||++.+|+..++.++.+ .+.++++.|+|
T Consensus        69 f~Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i  148 (174)
T PF11721_consen   69 FSYDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNI  148 (174)
T ss_dssp             EEEEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEET
T ss_pred             eEEEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEE
Confidence            99999977999999999999998743    34899999999999999999999999998655666665 78888899999


Q ss_pred             EeC
Q 006940          345 TLH  347 (624)
Q Consensus       345 ~~~  347 (624)
                      .|.
T Consensus       149 ~f~  151 (174)
T PF11721_consen  149 QFV  151 (174)
T ss_dssp             TEE
T ss_pred             EEE
Confidence            998

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.50  E-value=4.6e-14  Score=133.93  Aligned_cols=134  Identities=28%  Similarity=0.421  Sum_probs=83.8

Q ss_pred             EEEccCCCCCCCCCCCCceeeccCCccCCcccc----------cCC-C----CCCCCCcceeeeecCCCCCCceEEeecC
Q 006940           28 MRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN----------ATR-P----SFITPPLKTLRYFPLSEGPENCYIINRV   92 (624)
Q Consensus        28 ~~I~CG~~~~~~~~~~~~~w~~D~~~~~g~~~~----------~~~-~----~~~~~~y~t~R~F~~~~~~~~~Y~~~~~   92 (624)
                      ++||||++.-  ++..|..|.+|..+.+|...-          ... .    ...+++|+|.|+-+.    .+.|.||+.
T Consensus         3 ~~IN~Gg~~~--~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~~   76 (174)
T PF11721_consen    3 LRINAGGPAY--TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPVV   76 (174)
T ss_dssp             EEEEETSSSE--EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE--
T ss_pred             EEEECCCCcc--cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEecC
Confidence            6899998764  567899999999876554300          000 0    012258999999753    489999978


Q ss_pred             CCceeEEEEEEecccCCC----C-CCCCcEEEEEcCeEEEEeecCCCC---cc---cceeEEE-EEEeeCCeEEEEEee-
Q 006940           93 PKGHYNVRIFFGLVTLTS----F-DHEPLFDISVEGTQIYSLKSGWSD---HD---DRAFAEA-LVFLRDGTVSICFHS-  159 (624)
Q Consensus        93 ~~g~y~vRl~F~~~~y~~----~-~~~~~Fdv~~~~~~~~~v~~~~~~---~~---~~~~~E~-~~~~~~~~l~i~f~~-  159 (624)
                      ++|.|.|||||.+..+..    . ...+.|||.++|   .+|+.+|+.   .+   .++++++ -+.++++.|.|+|.. 
T Consensus        77 ~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g---~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~  153 (174)
T PF11721_consen   77 PNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNG---ETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWA  153 (174)
T ss_dssp             S-EEEEEEEEEE-SSS--------SSSS-EEEEETT---EEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE
T ss_pred             CCcEEEEEEEeccccccccccccCCCceEEEEEecc---eEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEec
Confidence            889999999999875543    1 346789999999   556666653   21   2577777 455799999999985 


Q ss_pred             ----------CCCCCCcEeeE
Q 006940          160 ----------TGHGDPAILSL  170 (624)
Q Consensus       160 ----------~~~~~pfIsaI  170 (624)
                                ...+.|.||||
T Consensus       154 ~~~~~~i~~~~~~~~p~IsaI  174 (174)
T PF11721_consen  154 GKGTLCIPFIGSYGNPLISAI  174 (174)
T ss_dssp             --SEEEEEEESSSSSSSEEEE
T ss_pred             CCCcEEeeccccCCCcEEeeC
Confidence                      44677999987

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.48  E-value=1.2e-13  Score=166.06  Aligned_cols=110  Identities=32%  Similarity=0.529  Sum_probs=87.8

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+++.+|..+.+|++|+.|+|++|++.|.+|..+.+|++|+.|+|++|.++|.+|..+.++++|+.|+|+
T Consensus       476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  555 (968)
T PLN00113        476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS  555 (968)
T ss_pred             cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence            46778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC  531 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc  531 (624)
                      +|+++|.+|..+.. +..|+.+++++|+..+
T Consensus       556 ~N~l~~~~p~~l~~-l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        556 QNQLSGEIPKNLGN-VESLVQVNISHNHLHG  585 (968)
T ss_pred             CCcccccCChhHhc-CcccCEEeccCCccee
Confidence            88888888877765 5667777777766544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.46  E-value=2.6e-13  Score=163.15  Aligned_cols=149  Identities=32%  Similarity=0.544  Sum_probs=100.5

Q ss_pred             CChHHHHHHHHhhhccCCCC--CCCCCC-CCCCCCCCCCCCcccccCCCCceeEEEEEEcCCCCCccCCCcccccccccc
Q 006940          371 TLPEEVRALQVLKNSLDLPH--RFGWNG-DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQ  447 (624)
Q Consensus       371 ~~~~~~~aL~~~k~~~~~~~--~~~W~~-~~c~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~  447 (624)
                      ..++|..+|++||.++.++.  ..+|+. +.|+    .|.|++|+..     .+++.|+|++|+++|.+|..+..|++|+
T Consensus        26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c----~w~gv~c~~~-----~~v~~L~L~~~~i~~~~~~~~~~l~~L~   96 (968)
T PLN00113         26 LHAEELELLLSFKSSINDPLKYLSNWNSSADVC----LWQGITCNNS-----SRVVSIDLSGKNISGKISSAIFRLPYIQ   96 (968)
T ss_pred             CCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCC----cCcceecCCC-----CcEEEEEecCCCccccCChHHhCCCCCC
Confidence            36689999999999987653  247953 3332    6999999732     2477888888888888887888888888


Q ss_pred             cccCcCccccccCCCCcC-CCccCCeEeccCCCCCC----------------------CCccccCCCCCCCEEeccCCcC
Q 006940          448 SINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNG----------------------SIPESLGQLTALRRLNLNGNTL  504 (624)
Q Consensus       448 ~L~Ls~N~l~g~ip~~l~-~l~~L~~LdLs~N~l~g----------------------~iP~~l~~l~~L~~L~Ls~N~l  504 (624)
                      .|+|++|+++|.+|..+. .+.+|++|+|++|+++|                      .+|..++++++|++|+|++|.+
T Consensus        97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l  176 (968)
T PLN00113         97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL  176 (968)
T ss_pred             EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence            888888888777776544 55666666666655554                      4444555555566666666666


Q ss_pred             cccCCchhhhccCCCCEEeccCCCC
Q 006940          505 SGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       505 ~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      .+.+|..+.. +.+|+.|++++|..
T Consensus       177 ~~~~p~~~~~-l~~L~~L~L~~n~l  200 (968)
T PLN00113        177 VGKIPNSLTN-LTSLEFLTLASNQL  200 (968)
T ss_pred             cccCChhhhh-CcCCCeeeccCCCC
Confidence            5555555544 45566666666553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.91  E-value=3.2e-10  Score=103.29  Aligned_cols=81  Identities=33%  Similarity=0.616  Sum_probs=52.3

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|-|++|.|+ .+|+.+..|.+|+.|++++|++. .+|.++++|+.|+.|+++-|++. .+|..++.++.|++|||.+
T Consensus        35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence            455666666665 45556666666666666666666 56666666666666666666666 6666666666666666666


Q ss_pred             CcCc
Q 006940          502 NTLS  505 (624)
Q Consensus       502 N~l~  505 (624)
                      |+++
T Consensus       112 nnl~  115 (264)
T KOG0617|consen  112 NNLN  115 (264)
T ss_pred             cccc
Confidence            6654

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=98.85  E-value=7.4e-09  Score=109.34  Aligned_cols=158  Identities=23%  Similarity=0.297  Sum_probs=102.2

Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCccccccccceeccCCCCCCChHHHHHHhhhcCCCCCccEEEeecC
Q 006940          198 LSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVD  277 (624)
Q Consensus       198 in~Gg~~~~~~~~~~~D~~~~dR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~Tar~~~~~~~~lt~~~~v~  277 (624)
                      ||||+.....  .|.|+.-  +|.|.+|..+...+     ....|....+.....+...|+|||...+.. .-.|+|++.
T Consensus         1 IdCG~~~~~s--~y~D~~t--g~~~~~D~~~~~~g-----~~~~i~~~~~~~~~~~~~~y~taR~F~~g~-r~cY~l~~~   70 (347)
T PF12819_consen    1 IDCGSSSNSS--SYVDDST--GRTWVSDDDFIDTG-----KSGNISSQPDSSSSDSSPPYQTARIFPEGS-RNCYTLPVT   70 (347)
T ss_pred             CcCCCCCCCc--ccccCCC--CcEEeCCCCcccCC-----CccccccccCCcCCccccccceEEEcCCCC-ccEEEeecc
Confidence            6999874321  3666555  99999997543211     122221111111123556899999987432 379999987


Q ss_pred             --CCCcEEEEEEEEeecCCCCC----CceEEEEEEECCeecccCCceeeecCCceeeEEEEEEEeee-CeeEEEEeCCCC
Q 006940          278 --PNRNYSIWLHFAEIDNTITG----VGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVN-GRTLTVTLHPKG  350 (624)
Q Consensus       278 --~~~~y~vrLhFaEi~~~~~~----~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~  350 (624)
                        .+++|+|||||.-..+....    ...-.|+++++...+. .+++..   .....+++++.+.+. ++.|.|.|.|..
T Consensus        71 ~~~~~~yliRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~-tV~~~~---~~~~~~~~E~ii~v~~~~~l~vclv~~~  146 (347)
T PF12819_consen   71 PPGGGKYLIRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWS-TVNLSN---SPSSPVVKEFIINVTWSDTLSVCLVPTG  146 (347)
T ss_pred             CCCCceEEEEEEeccccccccccccccCCcceEEEECCceeE-EEEecC---CCcceEEEEEEEEEcCCCcEEEEEEeCC
Confidence              45699999999976432111    1235699999987652 122211   111357888888887 688999999998


Q ss_pred             Cc-hHHHHHHhhhhhhhhcc
Q 006940          351 GS-HAIINAIEVFEIIAVES  369 (624)
Q Consensus       351 ~~-~p~lnaiEi~~~~~~~~  369 (624)
                      .. .|+|||||+..+.+..-
T Consensus       147 ~g~~pFIsaiEl~~lp~~ly  166 (347)
T PF12819_consen  147 SGTFPFISAIELRPLPDSLY  166 (347)
T ss_pred             CCCCCceeEEEEEECCccce
Confidence            54 49999999999977533

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.74  E-value=1.3e-09  Score=99.35  Aligned_cols=103  Identities=34%  Similarity=0.591  Sum_probs=55.3

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCC-------------------
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-------------------  482 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g-------------------  482 (624)
                      ++.|++.+|+|. .+|..++.|++|+.|+++-|++. .+|..|+.++.|+.|||.+|++..                   
T Consensus        58 levln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~  135 (264)
T KOG0617|consen   58 LEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLG  135 (264)
T ss_pred             hhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhc
Confidence            444555555544 34445555555555555555554 445555555555555555544432                   


Q ss_pred             -----CCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          483 -----SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       483 -----~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                           .+|..++++++|+.|.+..|.+- ++|.+++. +..|+.|.+.+|.
T Consensus       136 dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~-lt~lrelhiqgnr  184 (264)
T KOG0617|consen  136 DNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD-LTRLRELHIQGNR  184 (264)
T ss_pred             CCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHH-HHHHHHHhcccce
Confidence                 45555566666666666666655 55666654 4555566666665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.67  E-value=3.4e-09  Score=112.81  Aligned_cols=106  Identities=28%  Similarity=0.383  Sum_probs=70.0

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCcc---ccCCCCCCCEEe
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE---SLGQLTALRRLN  498 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~---~l~~l~~L~~L~  498 (624)
                      ++.|+|++|+|+..-+..|..|.+|+.|+|++|+++..-...|..|.+|+.|||++|.+++.|-+   .+..|++|+.|.
T Consensus       319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~  398 (873)
T KOG4194|consen  319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR  398 (873)
T ss_pred             ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence            66677777777766666677777777777777777655555666677777777777777666654   244566677777


Q ss_pred             ccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          499 LNGNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       499 Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |.+|++. .||...+..+..|++|+|.+|+
T Consensus       399 l~gNqlk-~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  399 LTGNQLK-SIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             ecCceee-ecchhhhccCcccceecCCCCc
Confidence            7777776 5565544446666666666664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.55  E-value=4.2e-08  Score=76.04  Aligned_cols=60  Identities=37%  Similarity=0.587  Sum_probs=42.7

Q ss_pred             ccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcC
Q 006940          445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTL  504 (624)
Q Consensus       445 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  504 (624)
                      +|+.|+|++|+++...+..|..+++|+.|+|++|.++...|..+.++++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            567777777777755556677777777777777777755556777777777777777764

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.54  E-value=1.1e-08  Score=109.61  Aligned_cols=103  Identities=28%  Similarity=0.464  Sum_probs=63.8

Q ss_pred             EEEEEcCCCCCcc-CCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCcc-ccCCCCCCCEEec
Q 006940          422 IDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNL  499 (624)
Q Consensus       422 l~~L~L~~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~-~l~~l~~L~~L~L  499 (624)
                      ++++.+..|+|.. -+|+.+..|..|+.||||+|+|. ..|..+..-.++-.|+||+|++. .||. -+-+|+.|-.|||
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcc
Confidence            4445566666642 35666666666666666666666 56666666666666666666666 5553 3446666666666


Q ss_pred             cCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          500 NGNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |+|++. .+|+.+.. +..|+.|+|++||
T Consensus       158 S~NrLe-~LPPQ~RR-L~~LqtL~Ls~NP  184 (1255)
T KOG0444|consen  158 SNNRLE-MLPPQIRR-LSMLQTLKLSNNP  184 (1255)
T ss_pred             ccchhh-hcCHHHHH-HhhhhhhhcCCCh
Confidence            666666 55665544 4556666666665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.54  E-value=1.7e-08  Score=103.30  Aligned_cols=105  Identities=30%  Similarity=0.411  Sum_probs=89.3

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|-|. .+|.+++.+..|+.|||+.|+|. .+|..+..+..|+.+-.++|++...-|+.+.+|.+|..|||.+
T Consensus       437 Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  437 LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN  514 (565)
T ss_pred             ceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence            666888877765 68888888888999999999887 7888887788888887888888755555699999999999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      |.+. .||+.+++ +.++++|.+.||++.
T Consensus       515 Ndlq-~IPp~Lgn-mtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  515 NDLQ-QIPPILGN-MTNLRHLELDGNPFR  541 (565)
T ss_pred             Cchh-hCChhhcc-ccceeEEEecCCccC
Confidence            9999 89999987 889999999999975

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.50  E-value=8.4e-08  Score=90.62  Aligned_cols=102  Identities=27%  Similarity=0.391  Sum_probs=38.4

Q ss_pred             EEEEEEcCCCCCccCCCcccc-cccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCcccc-CCCCCCCEEe
Q 006940          421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRLN  498 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l-~~l~~L~~L~  498 (624)
                      .++.|+|.+|.|+-.  ..++ .|.+|+.|+|++|.++ .++ .+..|+.|+.|+|++|+++ .+.+.+ ..+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            467899999999853  3455 5789999999999999 454 5788999999999999999 565544 4689999999


Q ss_pred             ccCCcCcccCC-chhhhccCCCCEEeccCCC
Q 006940          499 LNGNTLSGRVP-AALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       499 Ls~N~l~g~iP-~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++|++..--- ..+. .+++|+.|++.+||
T Consensus        95 L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   95 LSNNKISDLNELEPLS-SLPKLRVLSLEGNP  124 (175)
T ss_dssp             -TTS---SCCCCGGGG-G-TT--EEE-TT-G
T ss_pred             CcCCcCCChHHhHHHH-cCCCcceeeccCCc
Confidence            99999973211 1233 36789999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.48  E-value=6e-08  Score=108.65  Aligned_cols=104  Identities=30%  Similarity=0.449  Sum_probs=90.5

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      +|+.|+|+.|.|...-...+.+|..|+.|+||+|+|+ .+|..+.++..|++|...+|++. ..| ++..++.|+.+||+
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLS  460 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecc
Confidence            4888999999998655557899999999999999999 89999999999999999999998 888 88999999999999


Q ss_pred             CCcCc-ccCCchhhhccCCCCEEeccCCCC
Q 006940          501 GNTLS-GRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       501 ~N~l~-g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      .|+|+ +.+|....  .++|+.||++||.+
T Consensus       461 ~N~L~~~~l~~~~p--~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  461 CNNLSEVTLPEALP--SPNLKYLDLSGNTR  488 (1081)
T ss_pred             cchhhhhhhhhhCC--CcccceeeccCCcc
Confidence            99997 34454332  26899999999985

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.43  E-value=3.4e-08  Score=105.91  Aligned_cols=110  Identities=28%  Similarity=0.469  Sum_probs=98.8

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccc-cCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L  499 (624)
                      ++++|+|+.|+|+ .+|..+++|++|+.|.+.+|+|+- -||..|+.|.+|+.+..++|.|. .+|+.+..+..|+.|.|
T Consensus       269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L  346 (1255)
T KOG0444|consen  269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL  346 (1255)
T ss_pred             hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence            4677888888887 689999999999999999999852 47999999999999999999998 99999999999999999


Q ss_pred             cCCcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940          500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  534 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~  534 (624)
                      +.|++- ++|+.+- .+..|..|++..|+.+--+|
T Consensus       347 ~~NrLi-TLPeaIH-lL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  347 DHNRLI-TLPEAIH-LLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ccccee-echhhhh-hcCCcceeeccCCcCccCCC
Confidence            999998 8899875 48899999999999887665

>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]

Probab=98.40  E-value=2.4e-07  Score=90.49  Aligned_cols=107  Identities=20%  Similarity=0.277  Sum_probs=83.3

Q ss_pred             hHHHHHHhhhcCCCCCccEEEeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEEC-CeecccCCceeeecCCceee--E
Q 006940          253 PEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILIN-GDIAFQGVDVVKMSGDRYTA--L  329 (624)
Q Consensus       253 P~~Vy~Tar~~~~~~~~lt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~in-g~~~~~~~di~~~~~~~~~~--~  329 (624)
                      -..+|||+|+....   |.|..|.+..|+|-+.|.|||.++  +..+..+|||-+| +..+.+++|++...|+..++  .
T Consensus       107 d~ily~ter~neet---Fgyd~pik~dgdyalvlkfaevyF--~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe  181 (355)
T KOG3593|consen  107 DIILYQTERYNEET---FGYDVPIKEDGDYALVLKFAEVYF--KTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDE  181 (355)
T ss_pred             hhhhhhhcccchhh---hcccccccCCCceehhhhHHHHHH--HhhhhhheeeeeccceeEEeccchhhhcCCCcccccc
Confidence            45689999997544   788888889999999999999986  5678999999999 99999999999888753222  2


Q ss_pred             EEEEE-----------Ee-eeCeeEEEEeCCCCCchHHHHHHhhhhh
Q 006940          330 VLNTT-----------VA-VNGRTLTVTLHPKGGSHAIINAIEVFEI  364 (624)
Q Consensus       330 ~~~~~-----------~~-~~~~~l~i~~~~~~~~~p~lnaiEi~~~  364 (624)
                      ++.+.           +. ...|+++|+|.+..-.+|++||..|+.-
T Consensus       182 ~i~~~i~~gkls~~gess~~t~gkl~le~~kg~ldnpk~~a~aIl~g  228 (355)
T KOG3593|consen  182 IIPCLIGQGKLSVCGESSISTLGKLNLEFLKGVLDNPKDCARAILVG  228 (355)
T ss_pred             eEEEEEcCceEEEEeeeEEeecceEEEEeecccCCChhhhhHHHhhc
Confidence            22111           11 1237899999988777899999988775

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.35  E-value=3e-07  Score=98.38  Aligned_cols=107  Identities=22%  Similarity=0.275  Sum_probs=90.9

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      +++.|+|.+|-|+..-..++..++.|+.||||.|.++-.--..|..-.++++|+|++|+++..--..|..+.+|..|.|+
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence            58889999999998888889999999999999999994444567777889999999999986666788889999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      .|+++ .+|...+..++.|+.|+|..|.
T Consensus       206 rNrit-tLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  206 RNRIT-TLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             cCccc-ccCHHHhhhcchhhhhhccccc
Confidence            99999 7888777778888888887775

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.34  E-value=3.3e-07  Score=70.97  Aligned_cols=59  Identities=31%  Similarity=0.548  Sum_probs=55.1

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF  480 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l  480 (624)
                      |+.|+|++|+|+..-+..|.++++|+.|+|++|+++...|..|..|++|+.|+|++|+|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            78899999999987778999999999999999999988788999999999999999985

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.26  E-value=8e-08  Score=98.52  Aligned_cols=97  Identities=32%  Similarity=0.518  Sum_probs=61.6

Q ss_pred             EEcCCCCCccCCCcccccccccccccCcCccccccCCCCcC-CCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCc
Q 006940          425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT  503 (624)
Q Consensus       425 L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~  503 (624)
                      |+|..|.|. .+| +|.++..|..|.++.|++. .+|.+.. .|.+|..|||..|++. +.|+++.-+.+|+.||||+|.
T Consensus       211 LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~  286 (565)
T KOG0472|consen  211 LYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNND  286 (565)
T ss_pred             HHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCc
Confidence            444444443 223 4444444444444444444 3444333 6777777888888877 778887777888888888888


Q ss_pred             CcccCCchhhhccCCCCEEeccCCC
Q 006940          504 LSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       504 l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      ++ .+|.++++ + +|+.|.+.|||
T Consensus       287 is-~Lp~sLgn-l-hL~~L~leGNP  308 (565)
T KOG0472|consen  287 IS-SLPYSLGN-L-HLKFLALEGNP  308 (565)
T ss_pred             cc-cCCccccc-c-eeeehhhcCCc
Confidence            87 56777776 3 67777777876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.19  E-value=3.9e-07  Score=93.43  Aligned_cols=94  Identities=26%  Similarity=0.317  Sum_probs=72.7

Q ss_pred             ccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCC
Q 006940          439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH  518 (624)
Q Consensus       439 ~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~  518 (624)
                      .|.+|++|+.|+|++|++++.-+.+|..+..|+.|.|..|+|...--..|.+++.|+.|+|.+|+++-.-|..+.. +..
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~-~~~  347 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT-LFS  347 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc-cce
Confidence            4778888888888888888777888888888888888888887444455677888888888888888555555443 667


Q ss_pred             CCEEeccCCCCCCCC
Q 006940          519 RASFNFTDNAGLCGI  533 (624)
Q Consensus       519 l~~l~l~~N~~lc~~  533 (624)
                      |..|++-.|++.|.|
T Consensus       348 l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  348 LSTLNLLSNPFNCNC  362 (498)
T ss_pred             eeeeehccCcccCcc
Confidence            788888888888865

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.15  E-value=4.7e-07  Score=96.76  Aligned_cols=114  Identities=28%  Similarity=0.434  Sum_probs=97.5

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      |+.|.+++|+++ .+|.+++.+..|..||.+.|.+. .+|..++.|.+|+.|.+..|++. .+|+++..|+ |..||+++
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfSc  220 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSC  220 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeeccc
Confidence            677889999987 78999999999999999999998 88999999999999999999999 8888888655 88999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCCCCCCCCCCCCCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHL  543 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~~~~~c~~~~  543 (624)
                      |+++ .||..+.. |..|+.|-|.+||....  ....|.+.+
T Consensus       221 Nkis-~iPv~fr~-m~~Lq~l~LenNPLqSP--PAqIC~kGk  258 (722)
T KOG0532|consen  221 NKIS-YLPVDFRK-MRHLQVLQLENNPLQSP--PAQICEKGK  258 (722)
T ss_pred             Ccee-ecchhhhh-hhhheeeeeccCCCCCC--hHHHHhccc
Confidence            9999 89998876 88999999999995432  233565443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.02  E-value=7.4e-06  Score=94.12  Aligned_cols=77  Identities=27%  Similarity=0.332  Sum_probs=52.6

Q ss_pred             ccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEec
Q 006940          445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNF  524 (624)
Q Consensus       445 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l  524 (624)
                      +|+.|+|++|+|++ +|..   ..+|+.|+|++|+|+ .+|..   ..+|+.|+|++|+++ .+|..+.. +..|..|++
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~-L~~L~~LdL  452 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIH-LSSETTVNL  452 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhh-ccCCCeEEC
Confidence            45666666666663 4432   245777777777776 46643   245677888888887 78887765 678889999


Q ss_pred             cCCCCCC
Q 006940          525 TDNAGLC  531 (624)
Q Consensus       525 ~~N~~lc  531 (624)
                      ++|++.+
T Consensus       453 s~N~Ls~  459 (788)
T PRK15387        453 EGNPLSE  459 (788)
T ss_pred             CCCCCCc
Confidence            9998554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.98  E-value=6.4e-06  Score=77.89  Aligned_cols=85  Identities=33%  Similarity=0.497  Sum_probs=29.6

Q ss_pred             ccccccccccccCcCccccccCCCCcC-CCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccC
Q 006940          439 GISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLL  517 (624)
Q Consensus       439 ~~~~L~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~  517 (624)
                      .+.+..+++.|+|++|.++ .|. .++ .|.+|+.|||++|.++ .++ .+..++.|+.|+|++|+++ .+++.+...++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp   88 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP   88 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred             ccccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence            3455668999999999998 454 566 5889999999999999 554 5778999999999999999 56655544478


Q ss_pred             CCCEEeccCCC
Q 006940          518 HRASFNFTDNA  528 (624)
Q Consensus       518 ~l~~l~l~~N~  528 (624)
                      +|+.|++++|.
T Consensus        89 ~L~~L~L~~N~   99 (175)
T PF14580_consen   89 NLQELYLSNNK   99 (175)
T ss_dssp             T--EEE-TTS-
T ss_pred             cCCEEECcCCc
Confidence            89999999997

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.94  E-value=2e-06  Score=96.79  Aligned_cols=90  Identities=33%  Similarity=0.529  Sum_probs=82.4

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+. .+|..+..+.+|+.|+++.|.+. ..|.+..++.+|++|+|.+|.+. .+|..+..+.+|+.|+++
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence            4889999998875 78999999999999999999998 78899999999999999999999 999999999999999999


Q ss_pred             CCcCcccCCchhhh
Q 006940          501 GNTLSGRVPAALGG  514 (624)
Q Consensus       501 ~N~l~g~iP~~~~~  514 (624)
                      .|+|. .+|.-+..
T Consensus       123 ~N~f~-~~Pl~i~~  135 (1081)
T KOG0618|consen  123 FNHFG-PIPLVIEV  135 (1081)
T ss_pred             hhccC-CCchhHHh
Confidence            99998 88876543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.91  E-value=1.5e-06  Score=89.31  Aligned_cols=118  Identities=27%  Similarity=0.330  Sum_probs=84.7

Q ss_pred             CcccccCCC-----CceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccC-CCCC
Q 006940          408 GADCQFDRT-----SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY-NFFN  481 (624)
Q Consensus       408 gv~C~~~~~-----~~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~-N~l~  481 (624)
                      -|.|+..+-     .-+...+.|.|..|+|+..-|..|+.|++|+.||||+|+|+-.-|..|..|.+|..|-+-+ |+++
T Consensus        50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            367764321     1223467899999999988888999999999999999999988899999998887766554 8888


Q ss_pred             CCCc-cccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCC
Q 006940          482 GSIP-ESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN  527 (624)
Q Consensus       482 g~iP-~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N  527 (624)
                       .+| ..|++|.+|+.|.+.-|++.-..+..+.. +..+..|.+.+|
T Consensus       130 -~l~k~~F~gL~slqrLllNan~i~Cir~~al~d-L~~l~lLslyDn  174 (498)
T KOG4237|consen  130 -DLPKGAFGGLSSLQRLLLNANHINCIRQDALRD-LPSLSLLSLYDN  174 (498)
T ss_pred             -hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH-hhhcchhcccch
Confidence             555 57778888888877777777333333332 444444444444

>PLN03210 Resistant to P

Probab=97.91  E-value=2.5e-05  Score=95.60  Aligned_cols=106  Identities=22%  Similarity=0.252  Sum_probs=81.8

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .|+.|+|++|...+.+|..+++|++|+.|+|++|..-+.+|..+ ++++|+.|+|++|.....+|..   ..+|+.|+|+
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls  854 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS  854 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence            47789999998888899999999999999999886656788766 6888888888887655566653   3567788888


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCG  532 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~  532 (624)
                      +|.++ .+|..+.. +.+|+.|++.+++.+..
T Consensus       855 ~n~i~-~iP~si~~-l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        855 RTGIE-EVPWWIEK-FSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             CCCCc-cChHHHhc-CCCCCEEECCCCCCcCc
Confidence            88887 67777654 67788888877554443

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.88  E-value=1.9e-05  Score=91.12  Aligned_cols=94  Identities=30%  Similarity=0.434  Sum_probs=45.8

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      |+.|+|++|+|+ .+|..+.  .+|+.|+|++|++. .+|..+.  .+|+.|+|++|+|+ .+|+.+.  ++|+.|+|++
T Consensus       222 L~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~  292 (754)
T PRK15370        222 IKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYD  292 (754)
T ss_pred             CCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCC
Confidence            344444444444 2333221  24455555555554 4444332  35666666666665 4555442  3566666666


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |+|+ .+|..+.   .+|+.|++++|.
T Consensus       293 N~Lt-~LP~~lp---~sL~~L~Ls~N~  315 (754)
T PRK15370        293 NSIR-TLPAHLP---SGITHLNVQSNS  315 (754)
T ss_pred             Cccc-cCcccch---hhHHHHHhcCCc
Confidence            6666 3444322   234555555554

>PLN03210 Resistant to P

Probab=97.82  E-value=3.9e-05  Score=93.90  Aligned_cols=106  Identities=25%  Similarity=0.303  Sum_probs=70.9

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .|+.|+|.+|.|. .++..+..|++|+.|+|+++..-+.+| .+..+++|+.|+|++|.....+|..+.++++|+.|+|+
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            3666777777765 456666777777777777765545666 36677777777777776556777777777777777777


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +|..-+.+|..+  .+.+|+.|++++|..+
T Consensus       690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L  717 (1153)
T PLN03210        690 RCENLEILPTGI--NLKSLYRLNLSGCSRL  717 (1153)
T ss_pred             CCCCcCccCCcC--CCCCCCEEeCCCCCCc
Confidence            765445666654  2556666666665433

syringae 6; Provisional

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.82  E-value=2.2e-06  Score=75.95  Aligned_cols=105  Identities=21%  Similarity=0.344  Sum_probs=82.4

Q ss_pred             EEEEEEcCCCCCccCCCcccc-cccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L  499 (624)
                      .++.++|++|.++. +|..|. +.+.++.|+|++|.++ .+|.++..++.|+.|+++.|.|. ..|.-+..|.+|-.|+.
T Consensus        54 el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            47889999999984 566554 4568999999999999 88999999999999999999999 78888888999999999


Q ss_pred             cCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      .+|... +||-.+.- .......++.++++-
T Consensus       131 ~~na~~-eid~dl~~-s~~~al~~lgnepl~  159 (177)
T KOG4579|consen  131 PENARA-EIDVDLFY-SSLPALIKLGNEPLG  159 (177)
T ss_pred             CCCccc-cCcHHHhc-cccHHHHHhcCCccc
Confidence            999887 77766432 122223345555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.82  E-value=3.4e-06  Score=83.68  Aligned_cols=100  Identities=23%  Similarity=0.367  Sum_probs=46.6

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+++.|+|...  ..+..|.+|+.||||+|.++ .+...--.|.+.+.|.|+.|.+. .+ ..+..+-+|..||+++
T Consensus       309 ir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~  383 (490)
T KOG1259|consen  309 LRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSS  383 (490)
T ss_pred             eeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccccc
Confidence            44444444444321  11344444444444444444 22222233444444444444433 11 2344455667777777


Q ss_pred             CcCcccCC--chhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVP--AALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP--~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++. .+-  ..+++ ++.|+++.+.+||
T Consensus       384 N~Ie-~ldeV~~IG~-LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  384 NQIE-ELDEVNHIGN-LPCLETLRLTGNP  410 (490)
T ss_pred             cchh-hHHHhccccc-ccHHHHHhhcCCC
Confidence            7764 211  12332 5667777777777

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.77  E-value=6.4e-06  Score=85.87  Aligned_cols=107  Identities=31%  Similarity=0.432  Sum_probs=58.0

Q ss_pred             EEEEEcCCCCCccC----CCcccccccccccccCcCcccccc----CCCCcCCCccCCeEeccCCCCCCC----CccccC
Q 006940          422 IDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESLG  489 (624)
Q Consensus       422 l~~L~L~~n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~----iP~~l~  489 (624)
                      ++.|+|++|.+++.    ++..+..+++|+.|+|++|.+++.    ++..+..+++|+.|+|++|.+++.    ++..+.
T Consensus       139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~  218 (319)
T cd00116         139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA  218 (319)
T ss_pred             ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence            56666666666632    223444556666666666666632    223344445666677766666532    223445


Q ss_pred             CCCCCCEEeccCCcCcccCCchhhhc----cCCCCEEeccCCC
Q 006940          490 QLTALRRLNLNGNTLSGRVPAALGGR----LLHRASFNFTDNA  528 (624)
Q Consensus       490 ~l~~L~~L~Ls~N~l~g~iP~~~~~~----l~~l~~l~l~~N~  528 (624)
                      .+++|++|++++|.+++.....+...    ...|+.|++++|.
T Consensus       219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            55666677776666664222222221    1456666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.77  E-value=3.4e-05  Score=89.03  Aligned_cols=76  Identities=26%  Similarity=0.436  Sum_probs=45.2

Q ss_pred             cccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEe
Q 006940          444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFN  523 (624)
Q Consensus       444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~  523 (624)
                      ++|+.|++++|.+++ +|..+.  ++|+.|+|++|+|+ .+|..+.  ++|+.|+|++|+|+ .+|..+..   .|+.|+
T Consensus       325 ~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~---sL~~Ld  394 (754)
T PRK15370        325 PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPA---ALQIMQ  394 (754)
T ss_pred             ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHH---HHHHHh
Confidence            355556666666553 454442  46777777777766 4565442  46777777777776 56665432   355666


Q ss_pred             ccCCCC
Q 006940          524 FTDNAG  529 (624)
Q Consensus       524 l~~N~~  529 (624)
                      +++|..
T Consensus       395 Ls~N~L  400 (754)
T PRK15370        395 ASRNNL  400 (754)
T ss_pred             hccCCc
Confidence            776663

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.77  E-value=5.7e-06  Score=86.27  Aligned_cols=84  Identities=31%  Similarity=0.483  Sum_probs=35.8

Q ss_pred             EEEEEcCCCCCcc----CCCcccccc-cccccccCcCcccccc----CCCCcCCCccCCeEeccCCCCCCC----Ccccc
Q 006940          422 IDGLGLDNQGLRG----FLPNGISKL-RHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESL  488 (624)
Q Consensus       422 l~~L~L~~n~l~g----~~p~~~~~L-~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~----iP~~l  488 (624)
                      ++.|++++|.+.+    .+...+..+ ++|+.|+|++|.+++.    ++..+..+..|+.|+|++|.+++.    ++..+
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l  189 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL  189 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence            4445555554442    112223333 4455555555554421    122233344455555555554421    22223


Q ss_pred             CCCCCCCEEeccCCcCc
Q 006940          489 GQLTALRRLNLNGNTLS  505 (624)
Q Consensus       489 ~~l~~L~~L~Ls~N~l~  505 (624)
                      ..+++|+.|+|++|.++
T Consensus       190 ~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         190 KANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HhCCCCCEEeccCCccC
Confidence            33345555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.73  E-value=2e-05  Score=90.55  Aligned_cols=84  Identities=31%  Similarity=0.393  Sum_probs=71.3

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .|+.|+|++|.|++ +|..   ..+|+.|+|++|+|+ .+|..   ..+|+.|+|++|+|+ .+|..+.++++|+.|+|+
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            37789999999985 5643   357899999999999 47754   357889999999999 899999999999999999


Q ss_pred             CCcCcccCCchhh
Q 006940          501 GNTLSGRVPAALG  513 (624)
Q Consensus       501 ~N~l~g~iP~~~~  513 (624)
                      +|+|+|..|..+.
T Consensus       454 ~N~Ls~~~~~~L~  466 (788)
T PRK15387        454 GNPLSERTLQALR  466 (788)
T ss_pred             CCCCCchHHHHHH
Confidence            9999999887763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.71  E-value=3e-05  Score=55.57  Aligned_cols=36  Identities=44%  Similarity=0.635  Sum_probs=24.3

Q ss_pred             cCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCc
Q 006940          469 SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS  505 (624)
Q Consensus       469 ~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  505 (624)
                      +|++|+|++|+++ .+|..+++|++|+.|+|++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5677777777777 56666777777777777777776

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.71  E-value=1.9e-06  Score=92.30  Aligned_cols=100  Identities=34%  Similarity=0.568  Sum_probs=67.9

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|+.|+++ .+|..++.|+ |+.|-+++|+++ .+|..++.+..|..||.+.|++. .+|..++.+.+|+.|++..
T Consensus       123 lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrR  198 (722)
T KOG0532|consen  123 LTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRR  198 (722)
T ss_pred             HHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhh
Confidence            555667777766 4566666554 666777777776 66777776677777777777776 6677777777777777777


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++. .+|+++..  ..|..||++.|+
T Consensus       199 n~l~-~lp~El~~--LpLi~lDfScNk  222 (722)
T KOG0532|consen  199 NHLE-DLPEELCS--LPLIRLDFSCNK  222 (722)
T ss_pred             hhhh-hCCHHHhC--CceeeeecccCc
Confidence            7776 66666653  346677777776

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.66  E-value=2.6e-06  Score=93.46  Aligned_cols=106  Identities=22%  Similarity=0.303  Sum_probs=80.0

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCC-cCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L  499 (624)
                      .++.|+|++|.++..-  .+..|++|+.|||+.|.|. .+|.- ...+ .|+.|.|++|.++ .+ ..+.+|.+|+.|||
T Consensus       188 ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL-~gie~LksL~~LDl  261 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TL-RGIENLKSLYGLDL  261 (1096)
T ss_pred             HhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hh-hhHHhhhhhhccch
Confidence            4778999999987533  7888999999999999998 56632 2234 4999999999987 33 34678999999999


Q ss_pred             cCCcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940          500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCG  532 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~  532 (624)
                      ++|-+++.-.-..-..+..|..|.|.|||.-|.
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            999998642212222355678899999997774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.63  E-value=2.9e-05  Score=83.82  Aligned_cols=103  Identities=26%  Similarity=0.465  Sum_probs=46.9

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|++++|.+. .+|..+..|+.|+.|+++.|+++ .+|...+.++.|+.|++++|+++ .+|..+..+..|+.|.+++
T Consensus       142 L~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN  218 (394)
T ss_pred             cccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence            444555555544 23334445555555555555555 44444334455555555555554 4444444444455555555


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      |+.. .++..+.. +..+..+.+.+|+.
T Consensus       219 N~~~-~~~~~~~~-~~~l~~l~l~~n~~  244 (394)
T COG4886         219 NSII-ELLSSLSN-LKNLSGLELSNNKL  244 (394)
T ss_pred             Ccce-ecchhhhh-cccccccccCCcee
Confidence            5322 22222222 23344444555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.57  E-value=2.5e-05  Score=77.71  Aligned_cols=100  Identities=22%  Similarity=0.339  Sum_probs=78.5

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.++|++|.|+ .+..+..-++.++.|+||+|.+. .+. .+..|++|+.||||+|.|+ .+-..-..+-+.+.|.|+.
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence            678999999987 56667777899999999999997 333 4888999999999999988 5544445677888999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |.+. .+ +.+.. +-+|..|++.+|+
T Consensus       362 N~iE-~L-SGL~K-LYSLvnLDl~~N~  385 (490)
T KOG1259|consen  362 NKIE-TL-SGLRK-LYSLVNLDLSSNQ  385 (490)
T ss_pred             hhHh-hh-hhhHh-hhhheeccccccc
Confidence            9875 21 23443 5678889999986

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.54  E-value=4.9e-06  Score=73.75  Aligned_cols=100  Identities=29%  Similarity=0.401  Sum_probs=78.0

Q ss_pred             EEEcCCCCCccCCC---cccccccccccccCcCccccccCCCCcCCC-ccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940          424 GLGLDNQGLRGFLP---NGISKLRHLQSINLSGNSIRGAIPSSLGTI-ASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (624)
Q Consensus       424 ~L~L~~n~l~g~~p---~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L  499 (624)
                      .++|+++.|- .++   ..+.....|+.++|++|.|. .+|+.|... +.++.|+|++|.++ .+|.+++.++.|+.|++
T Consensus        31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL  107 (177)
T ss_pred             hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence            4667776653 233   34556677888899999998 666666554 58999999999999 99999999999999999


Q ss_pred             cCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          500 NGNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      +.|+|. ..|.-+.. +.++-.|+..+|.
T Consensus       108 ~~N~l~-~~p~vi~~-L~~l~~Lds~~na  134 (177)
T KOG4579|consen  108 RFNPLN-AEPRVIAP-LIKLDMLDSPENA  134 (177)
T ss_pred             ccCccc-cchHHHHH-HHhHHHhcCCCCc
Confidence            999998 66777766 5666666666665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.51  E-value=4.1e-05  Score=54.91  Aligned_cols=37  Identities=35%  Similarity=0.625  Sum_probs=29.3

Q ss_pred             cccccccCcCccccccCCCCcCCCccCCeEeccCCCCC
Q 006940          444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN  481 (624)
Q Consensus       444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~  481 (624)
                      ++|+.|+|++|+++ .+|+.+++|++|+.|+|++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            36888888888888 67767888999999999999887

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.25  E-value=9.3e-05  Score=79.90  Aligned_cols=102  Identities=32%  Similarity=0.533  Sum_probs=49.1

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|++++|.+. .+|...+.++.|+.|++++|++. .+|..+..+..|+.|.+++|.+. .++..+.++.++..|.+.+
T Consensus       165 L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~  241 (394)
T COG4886         165 LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSN  241 (394)
T ss_pred             ccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCC
Confidence            445555555554 23333334555555555555555 44444444444555555555433 3444455555555555555


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++. .+|..+.. +..++.|++++|.
T Consensus       242 n~~~-~~~~~~~~-l~~l~~L~~s~n~  266 (394)
T COG4886         242 NKLE-DLPESIGN-LSNLETLDLSNNQ  266 (394)
T ss_pred             ceee-eccchhcc-ccccceecccccc
Confidence            5554 22333322 3345555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.06  E-value=0.00022  Score=83.76  Aligned_cols=102  Identities=29%  Similarity=0.359  Sum_probs=65.8

Q ss_pred             EEEEEcCCCC--CccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940          422 IDGLGLDNQG--LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (624)
Q Consensus       422 l~~L~L~~n~--l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L  499 (624)
                      +++|-+..|.  +.-.....|..|+.|+.|||++|.=-+.+|..++.|-+|++|+|++..+. .+|..+.+|..|.+|++
T Consensus       547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl  625 (889)
T KOG4658|consen  547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNL  625 (889)
T ss_pred             cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecc
Confidence            5566666665  32222223666777777777777666677777777777777777777777 77777777777777777


Q ss_pred             cCCcCcccCCchhhhccCCCCEEecc
Q 006940          500 NGNTLSGRVPAALGGRLLHRASFNFT  525 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~~l~l~  525 (624)
                      ..+.....+|.... .+.+|+.|.+.
T Consensus       626 ~~~~~l~~~~~i~~-~L~~Lr~L~l~  650 (889)
T KOG4658|consen  626 EVTGRLESIPGILL-ELQSLRVLRLP  650 (889)
T ss_pred             ccccccccccchhh-hcccccEEEee
Confidence            77655444433332 25566666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.60  E-value=0.00017  Score=79.73  Aligned_cols=95  Identities=26%  Similarity=0.386  Sum_probs=70.6

Q ss_pred             EcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccc-cCCCCCCCEEeccCCcC
Q 006940          426 GLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLTALRRLNLNGNTL  504 (624)
Q Consensus       426 ~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~-l~~l~~L~~L~Ls~N~l  504 (624)
                      +.+.|.|. .+..++.-|+.|+.|||++|+++..-  .+..|+.|++|||++|.|. .+|.. ...+ .|+.|.|++|.+
T Consensus       170 ~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  170 SFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNAL  244 (1096)
T ss_pred             hcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHH
Confidence            33444443 23456777899999999999998432  7888999999999999999 67753 2333 499999999998


Q ss_pred             cccCCchhhhccCCCCEEeccCCC
Q 006940          505 SGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       505 ~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      +. + ..+.+ +.+|..||++.|-
T Consensus       245 ~t-L-~gie~-LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  245 TT-L-RGIEN-LKSLYGLDLSYNL  265 (1096)
T ss_pred             Hh-h-hhHHh-hhhhhccchhHhh
Confidence            72 2 22333 6778889999985

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.48  E-value=0.0014  Score=77.19  Aligned_cols=82  Identities=33%  Similarity=0.431  Sum_probs=73.7

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .+..|+|++|.=-+.+|..++.|-+|++|+|++..+. .+|..+++|..|.+||+..+.-...+|..+..|++|++|.|-
T Consensus       572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            4788999998878899999999999999999999999 899999999999999999988766777777789999999886


Q ss_pred             CCc
Q 006940          501 GNT  503 (624)
Q Consensus       501 ~N~  503 (624)
                      .-.
T Consensus       651 ~s~  653 (889)
T KOG4658|consen  651 RSA  653 (889)
T ss_pred             ccc
Confidence            554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.0013  Score=69.12  Aligned_cols=81  Identities=23%  Similarity=0.322  Sum_probs=33.9

Q ss_pred             EEEEcCCCCCccCCCcccccccccccccCcCccccccCC--CCcCCCccCCeEeccCCCCCC-CCccc-----cCCCCCC
Q 006940          423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP--SSLGTIASLEVLDLSYNFFNG-SIPES-----LGQLTAL  494 (624)
Q Consensus       423 ~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip--~~l~~l~~L~~LdLs~N~l~g-~iP~~-----l~~l~~L  494 (624)
                      +.|.|..|+..+.......-+..|+.|||++|++- ..+  ..++.|+.|+.|+++.+.+.. .+|+.     ...+++|
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence            33444444322222223333444555555555443 122  233444555555555554431 11221     2334455


Q ss_pred             CEEeccCCcC
Q 006940          495 RRLNLNGNTL  504 (624)
Q Consensus       495 ~~L~Ls~N~l  504 (624)
                      +.|+++.|++
T Consensus       304 ~~L~i~~N~I  313 (505)
T KOG3207|consen  304 EYLNISENNI  313 (505)
T ss_pred             eeeecccCcc
Confidence            5555555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.29  E-value=0.0017  Score=70.59  Aligned_cols=80  Identities=30%  Similarity=0.375  Sum_probs=57.4

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|.+|.|..... .+..|.+|+.|+|++|+|+...  .+..|..|+.|++++|.++ .+. .+..+.+|+.+++++
T Consensus        97 l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen   97 LEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLSY  171 (414)
T ss_pred             eeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcch-hcc-CCccchhhhcccCCc
Confidence            6778888888875433 2667888888888888887443  3566777888888888877 333 344577888888888


Q ss_pred             CcCcc
Q 006940          502 NTLSG  506 (624)
Q Consensus       502 N~l~g  506 (624)
                      |.+..
T Consensus       172 n~i~~  176 (414)
T KOG0531|consen  172 NRIVD  176 (414)
T ss_pred             chhhh
Confidence            88873

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.27  E-value=0.0045  Score=44.03  Aligned_cols=35  Identities=43%  Similarity=0.935  Sum_probs=23.8

Q ss_pred             hHHHHHHHHhhhccCC-CC--CCCCCC----CCCCCCCCCCCCcccc
Q 006940          373 PEEVRALQVLKNSLDL-PH--RFGWNG----DPCVPQQHPWSGADCQ  412 (624)
Q Consensus       373 ~~~~~aL~~~k~~~~~-~~--~~~W~~----~~c~~~~~~w~gv~C~  412 (624)
                      ++|+.||++||.++.. +.  ..+|+.    +||     .|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-----~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-----SWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-----CSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-----eeccEEeC
Confidence            5789999999999984 42  348963    566     59999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.96  E-value=0.0021  Score=69.88  Aligned_cols=100  Identities=32%  Similarity=0.474  Sum_probs=74.4

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      +..+.+..|.+.- +-..+..+++|+.|+|..|++. .+...+..|.+|++|+|++|.++...  .+..++.|+.|++++
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheecc
Confidence            3445566666553 3345778899999999999999 44444788999999999999998433  356677799999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |.++ .+.. +.. +..|+.+++++|.
T Consensus       150 N~i~-~~~~-~~~-l~~L~~l~l~~n~  173 (414)
T KOG0531|consen  150 NLIS-DISG-LES-LKSLKLLDLSYNR  173 (414)
T ss_pred             Ccch-hccC-Ccc-chhhhcccCCcch
Confidence            9998 3332 222 5677888888886

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.61  E-value=0.011  Score=58.50  Aligned_cols=97  Identities=24%  Similarity=0.309  Sum_probs=55.3

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCc--cccccCCCCcCCCccCCeEeccCCCCCCCCccc---cCCCCCCCE
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGN--SIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES---LGQLTALRR  496 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N--~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~---l~~l~~L~~  496 (624)
                      ++.|++.+..++..  ..+-.|++|+.|.|+.|  +..+.++...-.+++|++|+|+.|++.-  ++.   +..+.+|..
T Consensus        45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKS  120 (260)
T ss_pred             hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhh
Confidence            34444444444421  13445677788888888  5555566556666788888888887751  333   334556667


Q ss_pred             EeccCCcCcccCC---chhhhccCCCCEEe
Q 006940          497 LNLNGNTLSGRVP---AALGGRLLHRASFN  523 (624)
Q Consensus       497 L~Ls~N~l~g~iP---~~~~~~l~~l~~l~  523 (624)
                      |++.+|.-+. +-   ..++.++++|..|+
T Consensus       121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhcccCCccc-cccHHHHHHHHhhhhcccc
Confidence            7777776553 11   12333455555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.34  E-value=0.0066  Score=63.91  Aligned_cols=107  Identities=22%  Similarity=0.251  Sum_probs=71.4

Q ss_pred             EEEEEEcCCCCCccC-CCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCc--cccCCCCCCCEE
Q 006940          421 VIDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRL  497 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~-~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP--~~l~~l~~L~~L  497 (624)
                      +++.|.|++++|++. +...+..+++|..|+|+.|..-+.-......+..|+.|||++|++- ..+  ..++.++.|..|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence            477788888888853 2334456788888888888633333344555778888888888876 444  446778888888


Q ss_pred             eccCCcCcc-cCCch----hhhccCCCCEEeccCCC
Q 006940          498 NLNGNTLSG-RVPAA----LGGRLLHRASFNFTDNA  528 (624)
Q Consensus       498 ~Ls~N~l~g-~iP~~----~~~~l~~l~~l~l~~N~  528 (624)
                      +++.+.++. .+|+.    .......|+.|++..|+
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence            888887752 12322    01234567888888776

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.92  E-value=0.023  Score=54.17  Aligned_cols=56  Identities=23%  Similarity=0.325  Sum_probs=23.1

Q ss_pred             EEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCC
Q 006940          424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN  481 (624)
Q Consensus       424 ~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~  481 (624)
                      .++|++|.+.-  -..|..+.+|+.|.|++|+|+..-|.--..+++|+.|.|.+|++.
T Consensus        46 ~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   46 AIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             eecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            35555555431  112334444555555555554222222222334444444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.59  E-value=0.012  Score=35.26  Aligned_cols=12  Identities=58%  Similarity=0.573  Sum_probs=4.9

Q ss_pred             CCeEeccCCCCC
Q 006940          470 LEVLDLSYNFFN  481 (624)
Q Consensus       470 L~~LdLs~N~l~  481 (624)
                      |++|||++|+|+
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.56  E-value=0.045  Score=52.23  Aligned_cols=82  Identities=23%  Similarity=0.335  Sum_probs=60.6

Q ss_pred             ccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCc--ccCCchhhhccCCCC
Q 006940          443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS--GRVPAALGGRLLHRA  520 (624)
Q Consensus       443 L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~--g~iP~~~~~~l~~l~  520 (624)
                      +.+...+||+.|.+- .+ ..|..++.|..|.|++|+++..-|.--.-+++|+.|.|.+|++.  |.+-. +. .++.|+
T Consensus        41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La-~~p~L~  116 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LA-SCPKLE  116 (233)
T ss_pred             ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hc-cCCccc
Confidence            346778999999986 33 36778899999999999999555554445678999999999986  12211 12 246788


Q ss_pred             EEeccCCC
Q 006940          521 SFNFTDNA  528 (624)
Q Consensus       521 ~l~l~~N~  528 (624)
                      .|.+-+|+
T Consensus       117 ~Ltll~Np  124 (233)
T KOG1644|consen  117 YLTLLGNP  124 (233)
T ss_pred             eeeecCCc
Confidence            88888887

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.20  E-value=0.01  Score=59.57  Aligned_cols=73  Identities=21%  Similarity=0.271  Sum_probs=39.8

Q ss_pred             CCCCcccccCCCCceeEEEEEEcCCCCCccCCCcccccccccccccCcCcccccc-CCCCcCCCccCCeEeccCCCC
Q 006940          405 PWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFF  480 (624)
Q Consensus       405 ~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~l  480 (624)
                      .|.-+.|-...   ..+++.|+|+.|.|+..|-..-.-+.+|+.|-|.+..|.-. ....+..++.++.|.+|.|++
T Consensus        85 dWseI~~ile~---lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen   85 DWSEIGAILEQ---LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             cHHHHHHHHhc---CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            47766664332   22467777777777644332223445666666665555322 223455566666777766643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.17  E-value=0.018  Score=34.47  Aligned_cols=22  Identities=41%  Similarity=0.801  Sum_probs=16.2

Q ss_pred             ccccccCcCccccccCCCCcCCC
Q 006940          445 HLQSINLSGNSIRGAIPSSLGTI  467 (624)
Q Consensus       445 ~L~~L~Ls~N~l~g~ip~~l~~l  467 (624)
                      +|+.|||++|+|+ .+|..|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4778888888888 777776653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.00  E-value=0.04  Score=54.57  Aligned_cols=89  Identities=19%  Similarity=0.275  Sum_probs=60.8

Q ss_pred             CCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC--CCCCCCccccCCCCCCCEEeccCCcCcccCCchhh
Q 006940          436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN--FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALG  513 (624)
Q Consensus       436 ~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N--~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~  513 (624)
                      +....-.+..|+.|.+.+..++ .+ ..+..|++|+.|++|.|  +..+.++-..-.+++|++|+|++|++.  +++.+.
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccc
Confidence            3333444566777777777766 22 25667889999999999  666777766667799999999999986  233332


Q ss_pred             h--ccCCCCEEeccCCC
Q 006940          514 G--RLLHRASFNFTDNA  528 (624)
Q Consensus       514 ~--~l~~l~~l~l~~N~  528 (624)
                      .  .+.+|..|++.+|.
T Consensus       111 pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCS  127 (260)
T ss_pred             hhhhhcchhhhhcccCC
Confidence            1  24556777776654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.61  E-value=0.0054  Score=59.47  Aligned_cols=83  Identities=18%  Similarity=0.131  Sum_probs=73.8

Q ss_pred             eEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940          420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (624)
Q Consensus       420 ~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L  499 (624)
                      .+++.|+|+.|.+. .+-..|..|+.|..|+|+-|++. -+|..++++..+..+++..|.++ ..|.+.+.++.++.+++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            36888999999875 34557888999999999999998 78999999999999999999998 88999999999999999


Q ss_pred             cCCcCc
Q 006940          500 NGNTLS  505 (624)
Q Consensus       500 s~N~l~  505 (624)
                      -.|.|.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            999886

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.14  E-value=0.03  Score=56.36  Aligned_cols=85  Identities=25%  Similarity=0.264  Sum_probs=63.0

Q ss_pred             EEEEEEcCCCCCcc--CCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCC-CccccCCCCCCCEE
Q 006940          421 VIDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRRL  497 (624)
Q Consensus       421 ~l~~L~L~~n~l~g--~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~-iP~~l~~l~~L~~L  497 (624)
                      +|..++|.+|.|+.  .+..-+.+|+.|+.|+|+.|.|+..|-..-..+.+|+.|-|.+-.|... .-..+..++.++.|
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            47789999999873  3444567889999999999999865543224567888888888777643 33556778888889


Q ss_pred             eccCCcCc
Q 006940          498 NLNGNTLS  505 (624)
Q Consensus       498 ~Ls~N~l~  505 (624)
                      +++.|++.
T Consensus       152 HmS~N~~r  159 (418)
T KOG2982|consen  152 HMSDNSLR  159 (418)
T ss_pred             hhccchhh
Confidence            99888553

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.14  E-value=0.26  Score=52.85  Aligned_cols=13  Identities=31%  Similarity=0.475  Sum_probs=7.2

Q ss_pred             CCCEEeccCCcCc
Q 006940          493 ALRRLNLNGNTLS  505 (624)
Q Consensus       493 ~L~~L~Ls~N~l~  505 (624)
                      +|+.|++++|...
T Consensus       157 SLk~L~Is~c~~i  169 (426)
T PRK15386        157 SLKTLSLTGCSNI  169 (426)
T ss_pred             cccEEEecCCCcc
Confidence            4566666655543

>PRK15386 type III secretion protein GogB; Provisional

Probab=91.31  E-value=0.43  Score=51.21  Aligned_cols=11  Identities=9%  Similarity=0.169  Sum_probs=6.1

Q ss_pred             CCCEEeccCCC
Q 006940          518 HRASFNFTDNA  528 (624)
Q Consensus       518 ~l~~l~l~~N~  528 (624)
                      +|+.|++++|.
T Consensus       157 SLk~L~Is~c~  167 (426)
T PRK15386        157 SLKTLSLTGCS  167 (426)
T ss_pred             cccEEEecCCC
Confidence            45556665544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=90.22  E-value=0.3  Score=50.41  Aligned_cols=84  Identities=15%  Similarity=0.199  Sum_probs=51.1

Q ss_pred             EEEEEEcCCCCCccCCCcc----cccccccccccCcCcccccc-------------CCCCcCCCccCCeEeccCCCCCCC
Q 006940          421 VIDGLGLDNQGLRGFLPNG----ISKLRHLQSINLSGNSIRGA-------------IPSSLGTIASLEVLDLSYNFFNGS  483 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~----~~~L~~L~~L~Ls~N~l~g~-------------ip~~l~~l~~L~~LdLs~N~l~g~  483 (624)
                      +++.|+||.|.+.-..+..    +.++..|+.|.|.+|.+.-.             ...-.++-+.|+++...+|++.-.
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            4888999999887555543    45678888999988887521             112234446677777777776521


Q ss_pred             C----ccccCCCCCCCEEeccCCcC
Q 006940          484 I----PESLGQLTALRRLNLNGNTL  504 (624)
Q Consensus       484 i----P~~l~~l~~L~~L~Ls~N~l  504 (624)
                      -    -..+...+.|+.+.++.|.+
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I  197 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGI  197 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccc
Confidence            1    12233345555555555554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.05  E-value=0.16  Score=28.26  Aligned_cols=12  Identities=50%  Similarity=0.584  Sum_probs=4.1

Q ss_pred             CCeEeccCCCCC
Q 006940          470 LEVLDLSYNFFN  481 (624)
Q Consensus       470 L~~LdLs~N~l~  481 (624)
                      |+.|+|++|+|+
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            444444444443

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.68  E-value=0.035  Score=55.37  Aligned_cols=62  Identities=23%  Similarity=0.268  Sum_probs=32.3

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccC-CCCcCCCccCCeEeccCCCCCCCCc
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI-PSSLGTIASLEVLDLSYNFFNGSIP  485 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~l~g~iP  485 (624)
                      |+.|.|+-|.|+..-|  +..+++|+.|+|..|.|...- -..+.+|++|+.|-|..|.-.|.-+
T Consensus        43 lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   43 LEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             ceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc
Confidence            5556666666654322  445566666666666554111 1234455555555555555554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=89.65  E-value=0.17  Score=58.32  Aligned_cols=57  Identities=23%  Similarity=0.361  Sum_probs=24.7

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccc-cCCCCcCCCccCCeEeccCCCC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFF  480 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~LdLs~N~l  480 (624)
                      |..||+++.+++-.  .++++|++|+.|.+.+=.+.. ..-..+.+|++|+.||+|....
T Consensus       175 L~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  175 LRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             cceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            44455555544422  344445555554444333321 0011344455555555554443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.82  E-value=0.012  Score=57.03  Aligned_cols=87  Identities=18%  Similarity=0.196  Sum_probs=74.2

Q ss_pred             ccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCC
Q 006940          439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH  518 (624)
Q Consensus       439 ~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~  518 (624)
                      ++....+.+.|||+.|++- .+-..+..++.|..|||+.|++. .+|..++.+..+..+++..|+++ ..|.+... .++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k-~~~  112 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK-EPH  112 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc-cCC
Confidence            6777889999999999997 56667888999999999999988 88998999999999999999998 77888765 677


Q ss_pred             CCEEeccCCCC
Q 006940          519 RASFNFTDNAG  529 (624)
Q Consensus       519 l~~l~l~~N~~  529 (624)
                      ++.+++-+|++
T Consensus       113 ~k~~e~k~~~~  123 (326)
T KOG0473|consen  113 PKKNEQKKTEF  123 (326)
T ss_pred             cchhhhccCcc
Confidence            77777777763

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=88.68  E-value=0.17  Score=44.51  Aligned_cols=33  Identities=30%  Similarity=0.354  Sum_probs=17.5

Q ss_pred             CCceEEEEhhhHHHHHHHHHHHHHHHHHHHhhH
Q 006940          544 STSAKIGIGFGVLGLIFLLIICSMVWWKRRQNI  576 (624)
Q Consensus       544 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~  576 (624)
                      ....+++|++|+++++++++++++++.+|+|||
T Consensus        62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             cccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            334556677777766665555555555555444

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=88.44  E-value=0.22  Score=57.51  Aligned_cols=106  Identities=17%  Similarity=0.240  Sum_probs=75.3

Q ss_pred             EEEEEEcCCCCCccC-CCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCC-CCccccCCCCCCCEEe
Q 006940          421 VIDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLN  498 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~-~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g-~iP~~l~~l~~L~~L~  498 (624)
                      .|++|.+.+-.+... +-.-..++++|..||+|+.+++- + ..+++|.+|+.|-+.+=.+.- ..-..+-+|++|++||
T Consensus       149 sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD  226 (699)
T KOG3665|consen  149 SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD  226 (699)
T ss_pred             ccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence            377788877666432 33345678999999999999983 3 678899999999988877662 2223577899999999


Q ss_pred             ccCCcCccc--CCc---hhhhccCCCCEEeccCCC
Q 006940          499 LNGNTLSGR--VPA---ALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       499 Ls~N~l~g~--iP~---~~~~~l~~l~~l~l~~N~  528 (624)
                      +|..+....  +..   +.+..++.|+.||.++..
T Consensus       227 IS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  227 ISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             ccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            998876522  111   123346788999988753

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.12  E-value=0.32  Score=27.09  Aligned_cols=17  Identities=41%  Similarity=0.747  Sum_probs=10.3

Q ss_pred             CCCCEEeccCCcCcccCC
Q 006940          492 TALRRLNLNGNTLSGRVP  509 (624)
Q Consensus       492 ~~L~~L~Ls~N~l~g~iP  509 (624)
                      ++|+.|+|++|+|+ .+|
T Consensus         1 ~~L~~L~l~~n~L~-~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT-SLP   17 (17)
T ss_dssp             TT-SEEEETSS--S-SE-
T ss_pred             CccCEEECCCCCCC-CCc
Confidence            46899999999987 444

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=86.34  E-value=0.49  Score=47.32  Aligned_cols=83  Identities=29%  Similarity=0.351  Sum_probs=49.1

Q ss_pred             EEEEEcCCCCCccCC----CcccccccccccccCcCccccccC----C-------CCcCCCccCCeEeccCCCCCCCCcc
Q 006940          422 IDGLGLDNQGLRGFL----PNGISKLRHLQSINLSGNSIRGAI----P-------SSLGTIASLEVLDLSYNFFNGSIPE  486 (624)
Q Consensus       422 l~~L~L~~n~l~g~~----p~~~~~L~~L~~L~Ls~N~l~g~i----p-------~~l~~l~~L~~LdLs~N~l~g~iP~  486 (624)
                      ++.++||+|.|...-    ...+.+-.+|+..+++.- ++|..    +       +.+-.|+.|+..+||.|.|....|+
T Consensus        32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            455777777765432    223444455655555432 22222    1       2345677788888888877766663


Q ss_pred             ----ccCCCCCCCEEeccCCcCc
Q 006940          487 ----SLGQLTALRRLNLNGNTLS  505 (624)
Q Consensus       487 ----~l~~l~~L~~L~Ls~N~l~  505 (624)
                          .++..+.|.+|.|++|.+-
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCCC
Confidence                3456677888888877663

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=86.27  E-value=0.48  Score=32.81  Aligned_cols=8  Identities=25%  Similarity=0.028  Sum_probs=2.9

Q ss_pred             EEhhhHHH
Q 006940          550 GIGFGVLG  557 (624)
Q Consensus       550 ~i~~~~~~  557 (624)
                      ++++.+++
T Consensus        16 ~VvVPV~v   23 (40)
T PF08693_consen   16 GVVVPVGV   23 (40)
T ss_pred             EEEechHH
Confidence            33333333

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.60  E-value=0.72  Score=28.55  Aligned_cols=19  Identities=42%  Similarity=0.709  Sum_probs=9.9

Q ss_pred             CCCCEEeccCCcCcccCCch
Q 006940          492 TALRRLNLNGNTLSGRVPAA  511 (624)
Q Consensus       492 ~~L~~L~Ls~N~l~g~iP~~  511 (624)
                      ++|+.|+|++|+++ .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            44555555555555 44443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.60  E-value=0.72  Score=28.55  Aligned_cols=19  Identities=42%  Similarity=0.709  Sum_probs=9.9

Q ss_pred             CCCCEEeccCCcCcccCCch
Q 006940          492 TALRRLNLNGNTLSGRVPAA  511 (624)
Q Consensus       492 ~~L~~L~Ls~N~l~g~iP~~  511 (624)
                      ++|+.|+|++|+++ .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            44555555555555 44443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=85.37  E-value=1.3  Score=39.08  Aligned_cols=99  Identities=15%  Similarity=0.258  Sum_probs=52.6

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.+.+.. .+...-...|.++++|+.+.+..+ +...-...|.++.+|+.+.+.+ .+...-...+..+++|+.+++..
T Consensus        14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS   90 (129)
T ss_dssp             --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred             CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence            56677764 565555557788888888888775 5544455677887888888865 44322234566788888888876


Q ss_pred             CcCcccCCchhhhccCCCCEEeccC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTD  526 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~  526 (624)
                      | +. .++....... .++.+.+.+
T Consensus        91 ~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   91 N-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T--B-EEHTTTTTT--T--EEE-TT
T ss_pred             c-cc-EEchhhhcCC-CceEEEECC
Confidence            5 44 4444443333 566666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.34  E-value=0.72  Score=28.55  Aligned_cols=19  Identities=42%  Similarity=0.635  Sum_probs=13.5

Q ss_pred             CccCCeEeccCCCCCCCCcc
Q 006940          467 IASLEVLDLSYNFFNGSIPE  486 (624)
Q Consensus       467 l~~L~~LdLs~N~l~g~iP~  486 (624)
                      |++|+.|+|++|+++ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            456788888888877 5554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.34  E-value=0.72  Score=28.55  Aligned_cols=19  Identities=42%  Similarity=0.635  Sum_probs=13.5

Q ss_pred             CccCCeEeccCCCCCCCCcc
Q 006940          467 IASLEVLDLSYNFFNGSIPE  486 (624)
Q Consensus       467 l~~L~~LdLs~N~l~g~iP~  486 (624)
                      |++|+.|+|++|+++ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            456788888888877 5554

>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]

Probab=84.30  E-value=0.64  Score=46.48  Aligned_cols=140  Identities=17%  Similarity=0.174  Sum_probs=80.4

Q ss_pred             cEEEccCCCCCCCCCCCCceeeccCCcc------CCcccccC-C-CCCCCCCcceeeeecCCCCCCceEEeecCCCceeE
Q 006940           27 AMRISCGARQNIHSPPTNTLWFKDFAYT------GGIPANAT-R-PSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYN   98 (624)
Q Consensus        27 ~~~I~CG~~~~~~~~~~~~~w~~D~~~~------~g~~~~~~-~-~~~~~~~y~t~R~F~~~~~~~~~Y~~~~~~~g~y~   98 (624)
                      ...++||....  +|..|+.|-.|..-.      -|....+. + .......|+|+|+-..    .|.|..|+...|.|-
T Consensus        61 I~aVncGgdaa--vd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~nee----tFgyd~pik~dgdya  134 (355)
T KOG3593|consen   61 IPAVNCGGDAA--VDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE----TFGYDVPIKEDGDYA  134 (355)
T ss_pred             hheeccCChhh--hcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchh----hhcccccccCCCcee
Confidence            46699998765  366789999884211      12211111 1 1122357999999643    578999999999998


Q ss_pred             EEEEEecccCCCCCCCCcEEEEEc-CeEEEEeecCCCCcccc--eeEEEEEE-e--------------eCCeEEEEEeeC
Q 006940           99 VRIFFGLVTLTSFDHEPLFDISVE-GTQIYSLKSGWSDHDDR--AFAEALVF-L--------------RDGTVSICFHST  160 (624)
Q Consensus        99 vRl~F~~~~y~~~~~~~~Fdv~~~-~~~~~~v~~~~~~~~~~--~~~E~~~~-~--------------~~~~l~i~f~~~  160 (624)
                      +=+-|...+++. ...-.|||.++ .-....-++.|+..+++  .--|++.. +              ..+++.|.|.+.
T Consensus       135 lvlkfaevyF~~-~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~~i~~gkls~~gess~~t~gkl~le~~kg  213 (355)
T KOG3593|consen  135 LVLKFAEVYFKT-CQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPCLIGQGKLSVCGESSISTLGKLNLEFLKG  213 (355)
T ss_pred             hhhhHHHHHHHh-hhhhheeeeeccceeEEeccchhhhcCCCcccccceEEEEEcCceEEEEeeeEEeecceEEEEeecc
Confidence            889998665442 23347999998 42212222334433311  11122221 2              225566666655


Q ss_pred             CCCCCcEeeEEEE
Q 006940          161 GHGDPAILSLEIL  173 (624)
Q Consensus       161 ~~~~pfIsaIEl~  173 (624)
                      ....|-+++..|.
T Consensus       214 ~ldnpk~~a~aIl  226 (355)
T KOG3593|consen  214 VLDNPKDCARAIL  226 (355)
T ss_pred             cCCChhhhhHHHh
Confidence            5566666655544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.61  E-value=0.068  Score=53.38  Aligned_cols=97  Identities=26%  Similarity=0.265  Sum_probs=73.6

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCc--cccCCCCCCCEEec
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRLNL  499 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP--~~l~~l~~L~~L~L  499 (624)
                      +..|++-+++|+..  ....+++.|+.|.||-|+++..-  .+..|++|++|+|..|.+. .+-  ..+.++++|+.|.|
T Consensus        21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             hhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhh
Confidence            56677777777632  12347889999999999998433  4778999999999999887 443  35789999999999


Q ss_pred             cCCcCcccCCchhh----hccCCCCEEe
Q 006940          500 NGNTLSGRVPAALG----GRLLHRASFN  523 (624)
Q Consensus       500 s~N~l~g~iP~~~~----~~l~~l~~l~  523 (624)
                      ..|.-.|.-+....    ..+++|+.|+
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999988765432    2366777664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=83.52  E-value=1.4  Score=44.13  Aligned_cols=103  Identities=17%  Similarity=0.251  Sum_probs=63.5

Q ss_pred             EEEEEEcCCCCCccCCCcc----cccccccccccCcCccccccCC--------------CCcCCCccCCeEeccCCCCCC
Q 006940          421 VIDGLGLDNQGLRGFLPNG----ISKLRHLQSINLSGNSIRGAIP--------------SSLGTIASLEVLDLSYNFFNG  482 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~----~~~L~~L~~L~Ls~N~l~g~ip--------------~~l~~l~~L~~LdLs~N~l~g  482 (624)
                      +++.++||.|.+....|+.    +++-+.|.+|.|++|.+. ++-              .-..+-+.|+..+...|+|. 
T Consensus        93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-  170 (388)
T COG5238          93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-  170 (388)
T ss_pred             cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence            4777888888888777765    345577888888888775 221              12234567888888888776 


Q ss_pred             CCcc-----ccCCCCCCCEEeccCCcCcccCCchhhh-------ccCCCCEEeccCCC
Q 006940          483 SIPE-----SLGQLTALRRLNLNGNTLSGRVPAALGG-------RLLHRASFNFTDNA  528 (624)
Q Consensus       483 ~iP~-----~l~~l~~L~~L~Ls~N~l~g~iP~~~~~-------~l~~l~~l~l~~N~  528 (624)
                      .-|.     .+.....|+.+.+..|-+.   |..+..       .+.+|+.|++.+|-
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccc
Confidence            2221     1222246677777777665   442211       13456777777775

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=82.21  E-value=0.5  Score=42.95  Aligned_cols=18  Identities=39%  Similarity=0.455  Sum_probs=10.0

Q ss_pred             CceEEEEhhhHHHHHHHH
Q 006940          545 TSAKIGIGFGVLGLIFLL  562 (624)
Q Consensus       545 ~~~~~~i~~~~~~~~~~~  562 (624)
                      +..++++++|+.+.++++
T Consensus        48 knIVIGvVVGVGg~ill~   65 (154)
T PF04478_consen   48 KNIVIGVVVGVGGPILLG   65 (154)
T ss_pred             ccEEEEEEecccHHHHHH
Confidence            345677777755444433

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=82.21  E-value=0.14  Score=52.80  Aligned_cols=108  Identities=19%  Similarity=0.335  Sum_probs=77.7

Q ss_pred             EEEEEEcCCCCCcc----CCCcccccccccccccCcCcccccc----CCCCcCCCccCCeEeccCCCCCCCCc----ccc
Q 006940          421 VIDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIP----ESL  488 (624)
Q Consensus       421 ~l~~L~L~~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~iP----~~l  488 (624)
                      .++.+.++.|+|.-    .+...+..+++|+.|||..|-|+-.    +-..+..++.|+.|+++++.+.-.=-    +.+
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            47778888888752    2344688999999999999998743    23556778899999999999873222    112


Q ss_pred             -CCCCCCCEEeccCCcCccc----CCchhhhccCCCCEEeccCCCC
Q 006940          489 -GQLTALRRLNLNGNTLSGR----VPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       489 -~~l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                       ...++|++|.|.+|.++-.    +-..+.. .+.|..|++++|.+
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l  310 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL  310 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence             2468999999999999632    1112222 46788999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	624
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-13
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-08
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 7/146 (4%)
Query: 397 DPCVPQQHPWSG-ADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS 455
           +PC      + G     FD       +D   +    L G++P  I  + +L  +NL  N 
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLD---MSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 456 IRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGR 515
           I G+IP  +G +  L +LDLS N  +G IP+++  LT L  ++L+ N LSG +P    G+
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM--GQ 725
Query: 516 LLHRASFNFTDNAGLCGIPGLRACGP 541
                   F +N GLCG P L  C P
Sbjct: 726 FETFPPAKFLNNPGLCGYP-LPRCDP 750

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 7/146 (4%)
Query: 397 DPCVPQQHPWSG-ADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS 455
           +PC      + G     FD       +D   +    L G++P  I  + +L  +NL  N 
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLD---MSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 456 IRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGR 515
           I G+IP  +G +  L +LDLS N  +G IP+++  LT L  ++L+ N LSG +P    G+
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM--GQ 722
Query: 516 LLHRASFNFTDNAGLCGIPGLRACGP 541
                   F +N GLCG P L  C P
Sbjct: 723 FETFPPAKFLNNPGLCGYP-LPRCDP 747

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 426 GLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP 485
           G++N  L G +P  I+KL  L  + ++  ++ GAIP  L  I +L  LD SYN  +G++P
Sbjct: 85  GINN--LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 486 ESLGQLTALRRLNLNGNTLSGRVPAALG 513
            S+  L  L  +  +GN +SG +P + G
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYG 170

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTA 493
           LP+G+  KL +L  +NL+ N ++         + +L  LDLSYN    S+PE +  +LT 
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQ 182
Query: 494 LRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR 537
           L+ L L  N L   VP  +  RL         DN   C  PG+R
Sbjct: 183 LKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 225

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	624
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-22
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	9e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  113 bits (286), Expect = 4e-28
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + L    L G         ++ Q I+L+ NS+   +   +G   +L  LDL  N   G++
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 539
           P+ L QL  L  LN++ N L G +P   GG L       + +N  LCG P L AC
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSP-LPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  112 bits (283), Expect = 1e-27
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 35/171 (20%)

Query: 373 PEEVRALQVLKNSLDLPHRF-GWNG--DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDN 429
           P++ +AL  +K  L  P     W    D C      W G  C  D  +  + ++ L L  
Sbjct: 5   PQDKQALLQIKKDLGNPTTLSSWLPTTDCC---NRTWLGVLC--DTDTQTYRVNNLDLSG 59

Query: 430 QGLRG------------FL---------------PNGISKLRHLQSINLSGNSIRGAIPS 462
             L              +L               P  I+KL  L  + ++  ++ GAIP 
Sbjct: 60  LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

Query: 463 SLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALG 513
            L  I +L  LD SYN  +G++P S+  L  L  +  +GN +SG +P + G
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  101 bits (255), Expect = 6e-24
 Identities = 22/90 (24%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + +  + G +P+ +S+++ L +++ S N++ G +P S+ ++ +L  +    N  +G+I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 485 PESLGQLTALRR-LNLNGNTLSGRVPAALG 513
           P+S G  + L   + ++ N L+G++P    
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 95.7 bits (239), Expect = 8e-22
 Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASL-EVLDLSYNFFNGS 483
           L      L G LP  IS L +L  I   GN I GAIP S G+ + L   + +S N   G 
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAALG 513
           IP +   L  L  ++L+ N L G      G
Sbjct: 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFG 218

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174

 Score =  108 bits (272), Expect = 9e-28
 Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 31/187 (16%)

Query: 189 GLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKA 248
           GL  +    ++ G       VD  G H+  D         G+ +D               
Sbjct: 1   GLADKVIWAVNAGGES---HVDVHGIHYRKDPLEG---RVGRASDYGMKLPILR------ 48

Query: 249 PNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILIN 308
            N   + LYQT   + DS     Y + +     Y + L FAE+        Q+VFD+ +N
Sbjct: 49  SNPEDQVLYQTERYNEDS---FGYDIPIKEEGEYVLVLKFAEVYFA--QSQQKVFDVRVN 103

Query: 309 GDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHP-------------KGGSHAI 355
           G    + +D+    G   TA      +++    L+V                     +  
Sbjct: 104 GHTVVKDLDIFDRVG-HSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYDNPK 162

Query: 356 INAIEVF 362
           + A+ + 
Sbjct: 163 VCALFIM 169

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  110 bits (277), Expect = 2e-25
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 23/146 (15%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             + ++   G           +  +++S N + G IP  +G++  L +L+L +N  +GSI
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG-RLLHRA--SFN------------------ 523
           P+ +G L  L  L+L+ N L GR+P A+    +L     S N                  
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732

Query: 524 -FTDNAGLCGIPGLRACGPHLSTSAK 548
            F +N GLCG P L  C P  +    
Sbjct: 733 KFLNNPGLCGYP-LPRCDPSNADGYA 757

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (270), Expect = 2e-24
 Identities = 38/103 (36%), Positives = 57/103 (55%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L LD   L G +P+G+S   +L  I+LS N + G IP  +G + +L +L LS N F+G+I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 527
           P  LG   +L  L+LN N  +G +PAA+  +    A+      
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (262), Expect = 2e-23
 Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 14/158 (8%)

Query: 364 IIAVESKTLPEEVRALQVLKNSLDLPHRF-GWNG--DPCVPQQHPWSGADCQFDRTSHKW 420
             A  S++L  E+  L   K+ L   +    W+   +PC      + G  C   R     
Sbjct: 2   FQASPSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCT-----FDGVTC---RDDKVT 53

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
            ID            + + +  L  L+S+ LS + I G++       ASL  LDLS N  
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSL 112

Query: 481 NGSIPE--SLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
           +G +    SLG  + L+ LN++ NTL      + G +L
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (255), Expect = 1e-22
 Identities = 35/89 (39%), Positives = 49/89 (55%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N G  G +P  +S    L S++LS N + G IPSSLG+++ L  L L  N   G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P+ L  +  L  L L+ N L+G +P+ L 
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLS 487

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (255), Expect = 1e-22
 Identities = 32/89 (35%), Positives = 48/89 (53%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L G +P  +  ++ L+++ L  N + G IPS L    +L  + LS N   G I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P+ +G+L  L  L L+ N+ SG +PA LG
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELG 535

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (252), Expect = 2e-22
 Identities = 30/89 (33%), Positives = 45/89 (50%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L G +P+ +  L  L+ + L  N + G IP  L  + +LE L L +N   G I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P  L   T L  ++L+ N L+G +P  +G
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.9 bits (242), Expect = 5e-21
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 425 LGLDNQGLRGFLPNGISK--LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG 482
           L L +    G +   + +     LQ + L  N   G IP +L   + L  L LS+N+ +G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALG 513
           +IP SLG L+ LR L L  N L G +P  L 
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.1 bits (240), Expect = 7e-21
 Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGS 483
           L L      G +P        L+S+ LS N+  G +P  +L  +  L+VLDLS+N F+G 
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 484 IPESLGQLTA-LRRLNLNGNTLSGRVPAALGGRLL 517
           +PESL  L+A L  L+L+ N  SG +   L     
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.1 bits (240), Expect = 8e-21
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    + G +   +S+  +L+ +++S N+    IP  LG  ++L+ LD+S N  +G  
Sbjct: 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAAL 512
             ++   T L+ LN++ N   G +P   
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.4 bits (238), Expect = 1e-20
 Identities = 23/83 (27%), Positives = 39/83 (46%)

Query: 432 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
            +G     +++L      N++     G    +     S+  LD+SYN  +G IP+ +G +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 492 TALRRLNLNGNTLSGRVPAALGG 514
             L  LNL  N +SG +P  +G 
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGD 678

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.6 bits (236), Expect = 3e-20
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGS 483
           L + +    G +P     L+ LQ ++L+ N   G IP  L G   +L  LDLS N F G+
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
           +P   G  + L  L L+ N  SG +P     ++
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.2 bits (222), Expect = 1e-18
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 425 LGLDNQGLRGFLPNGI---SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           L L    + G    G         L+ + +SGN I G +   +    +LE LD+S N F+
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS 213

Query: 482 GSIPESLGQLTALRRLNLNGNTLSGRVPAALG 513
             IP  LG  +AL+ L+++GN LSG    A+ 
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAIS 244

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 87.7 bits (218), Expect = 4e-18
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + L N  L G +P  I +L +L  + LS NS  G IP+ LG   SL  LDL+ N FNG+I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           P ++ + +      +  N ++G+    +  
Sbjct: 555 PAAMFKQS----GKIAANFIAGKRYVYIKN 580

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.9 bits (203), Expect = 2e-16
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 425 LGLDNQGLRGFLPNG--ISKLRHLQSINLSGNSIRGAIPSSLGT-IASLEVLDLSYNFFN 481
           L L    L G +     +     L+ +N+S N++      S G  + SLEVLDLS N  +
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 482 GSIPESL---GQLTALRRLNLNGNTLSGRVP 509
           G+             L+ L ++GN +SG V 
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 2e-15
 Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR--GAIPSSLGTIASLEVLDLSYNFFNG 482
             +    + G     I      +  + +GN +   G     L  +++    +++   + G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALG 513
               +     ++  L+++ N LSG +P  +G
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 7/105 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N    G +P  +   R L  ++L+ N   G IP+++   +      ++ NF  G  
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKR 574

Query: 485 PESLGQLTALRRLNL--NGNTLSGRVPAALGGRLLHRASFNFTDN 527
              +      +  +   N     G     L  RL  R   N T  
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQL-NRLSTRNPCNITSR 618

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 27/107 (25%), Positives = 48/107 (44%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N     FLP+  ++LR+L  ++LS   +    P++  +++SL+VL++S+N F       
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534
              L +L+ L+ + N +       L       A  N T N   C   
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.7 bits (210), Expect = 2e-17
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    ++         L HL ++ L+GN I+     +   ++SL+ L           
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 485 PESLGQLTALRRLNLNGNTL-SGRVPAALGG 514
              +G L  L+ LN+  N + S ++P     
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.9 bits (208), Expect = 4e-17
 Identities = 17/88 (19%), Positives = 32/88 (36%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
           L    LR            LQ ++LS   I+     +  +++ L  L L+ N        
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
           +   L++L++L      L+      +G 
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGH 122

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 81.2 bits (201), Expect = 3e-16
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI-PSSLGTIASLEVLDLSYNFFNGSIPE 486
                R       + L  L+ + ++GNS +    P     + +L  LDLS        P 
Sbjct: 430 HTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
           +   L++L+ LN++ N            
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L    P   + L  LQ +N+S N+           + SL+VLD S N    S 
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 485 PESLGQL-TALRRLNLNGNTLSG 506
            + L    ++L  LNL  N  + 
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.0 bits (190), Expect = 7e-15
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGS 483
           L      L       I  L+ L+ +N++ N I+   +P     + +LE LDLS N     
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 484 IPESLGQLTALR----RLNLNGNTLSGRVPAALGG 514
               L  L  +      L+L+ N ++   P A   
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 13/84 (15%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
           + +    L  L+ ++   ++++     S   ++ +L  LD+S+     +       L++L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 495 RRLNLNGNTLSGRVPAALGGRLLH 518
             L + GN+        +   L +
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRN 471

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.3 bits (183), Expect = 4e-14
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           +P+ +      ++++LS N +R     S  +   L+VLDLS          +   L+ L 
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 496 RLNLNGNTLSGRVPAALGG 514
            L L GN +      A  G
Sbjct: 80  TLILTGNPIQSLALGAFSG 98

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEV----LDLSYNFFNGS 483
            N      LP   S L +L+ ++LS N I+    + L  +  + +    LDLS N  N  
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
            P +  ++  L +L L  N  S  V       L
Sbjct: 193 QPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGL 224

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 410 DCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSI--RGAIPSSLGTI 467
           +C+F +     +     L     +G        L  L+ ++LS N +  +G    S    
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 468 ASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
            SL+ LDLS+N     +  +   L  L  L+   + L      ++   L
Sbjct: 373 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 6/101 (5%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA-SLEVLDLSYNFFNGSIPE 486
            N             L  LQ ++ S N I  +    L     SL  L+L+ N F  +   
Sbjct: 503 HNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

Query: 487 S--LGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFT 525
              L  +   R+L +    +    P+   G  +   S N T
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSDKQGMPV--LSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQ----SINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           L L +  ++      +  L  +     S++LS N +    P +   I  L  L L  NF 
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD 212

Query: 481 NGSIPE-SLGQLTALRRLNLNGNTLSG 506
           + ++ +  +  L  L    L       
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN--G 482
           L L N     F    +  L+ L   +  G         S   + SLE LDLS N  +  G
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHR 519
              +S    T+L+ L+L+ N +       LG   L  
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 2/78 (2%)

Query: 429 NQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
                  + +  + L ++ S +L   +I      S       + L+L    F       L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPTLKL 324

Query: 489 GQLTALRRLNLNGNTLSG 506
             L  L   +  G     
Sbjct: 325 KSLKRLTFTSNKGGNAFS 342

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 9/100 (9%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGA------IPSSLGTIASLEVLDLSYNFFN 481
           +N      +   I  L  L+   L     R          S+L  + +L + +    + +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 482 GS---IPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518
                I +    LT +   +L   T+      +      H
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.3 bits (222), Expect = 1e-18
 Identities = 21/111 (18%), Positives = 34/111 (30%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
           L      G     +  L HL  +NL  N            +  L+++DL  N  N     
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR 537
                 +L+ LNL  N ++       G    +    +   N   C    + 
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIA 629

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  ++    N   K ++L +++LS N +      +   + +L+ L LS N      
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 485 PESLG--QLTALRRLNLNGNTLSGRVPAALGG 514
            E L     ++L++L L+ N +    P     
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 4e-15
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N+ L        +   +L  ++L  NSI+    +      +L  LDLS+N  + +   +
Sbjct: 82  HNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALG 513
             QL  L+ L L+ N +       L 
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELD 166

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 5e-15
 Identities = 18/90 (20%), Positives = 28/90 (31%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    +    P    KL  L+ +NL  N +      +     +L  L L  N      
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                +   L  L+L+ N LS         
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.3 bits (191), Expect = 6e-15
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGS 483
           L L    +     +  S L HL+ ++L  N I   +       + ++  + LSYN +   
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 484 IPESLGQLTALRRLNLNGNTLSG 506
              S   + +L+RL L    L  
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.6 bits (189), Expect = 1e-14
 Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA--SLEVLDLSYNFFNG 482
           L L + GL         +L +LQ + LS N I+      L   A  SL+ L+LS N    
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
             P     +  L  L LN   L   +   L   L
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  LR       ++   L S+++  N+I    P     +  L+VL+L +N  +   
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            ++    T L  L+L  N++          
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 425 LGLDNQGLRGFLPNG-ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG- 482
           L L    +   L       L ++  I LS N       +S   + SL+ L L        
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 483 -SIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            S P     L  L  L+L+ N ++      L G
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 2e-14
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
             +  L   +P+ +    ++  +NL+ N +R    ++    + L  LD+ +N  +   PE
Sbjct: 11  CSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
              +L  L+ LNL  N LS         
Sbjct: 68  LCQKLPMLKVLNLQHNELSQLSDKTFAF 95

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 4e-14
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 425 LGLDNQGLRGFLPNGIS---KLRHLQSINLSGNSIRGAIPSSLG--TIASLEVLDLSYNF 479
           L L+N  L   L   +        +++++LS + +     ++       +L +LDLSYN 
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            N    +S   L  L    L  N +      +L G
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.9 bits (182), Expect = 6e-14
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSI--------RGAIPSSLGTIASLEVLDLS 476
           L L N  +     + +  L  L+ ++L  N++         G     L  ++ L +L+L 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 477 YNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            N F+    E    L  L+ ++L  N L+    +    
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L     +  + L  L+   L  N+I+     SL  + ++  L+L  +F   SI
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 485 ---------PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                      S   L  L  LN+  N + G       G
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG--AIPSSLGTIASLEVLDLSYNFFNG 482
           + L          N  + +  LQ + L   +++   + PS    + +L +LDLS N    
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 483 SIPESLGQLTALRRLNLNGNTLS 505
              + L  L  L  L+L  N L+
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 425 LGLDNQGLRGFLPNGIS--KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG 482
           L L N  ++      +       L+ + LS N I+   P     I  L  L L+      
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 483 SIPESLG---QLTALRRLNLNGNTLSGRVPAALGG 514
           S+ E L      T++R L+L+ + LS        G
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 4e-13
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L++ G           L  L+ I+L  N++     S      SL+ L+L  N      
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 485 PESLG-QLTALRRLNLNGNTLSG 506
            +  G     L  L++  N    
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLR--HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG 482
           L L N  L          L+  +L  ++LS N++      S   +  LE   L YN    
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 483 SIPESLGQLTALRRLNLNGNTLSG 506
               SL  L  +R LNL  +    
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQ 310

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 8e-12
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG----TIASLEVLDLSYNFF 480
           L +++  + G   N  + L +L+ ++LS +       ++        + L +L+L+ N  
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPA 510
           +    ++   L  L  L+L  N +   +  
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             L       F+    S L  L   NL+ N I      +   +  LEVLDL  N     +
Sbjct: 365 TSLRTLTNETFVSLAHSPLHIL---NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 485 P-ESLGQLTALRRLNLNGNTLSGRVPAALGG 514
             +    L  +  + L+ N        +   
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             +    L          L+ L+ +N+  N I G   +    + +L+ L LS +F +   
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 485 PESLG----QLTALRRLNLNGNTLSGRVPAALGG 514
             +        + L  LNL  N +S     A   
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 4e-11
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGN---------SIRGAIPSSLGTIASLEVLDLSYN 478
            N  ++    + +  L +++ +NL  +         S+      S   +  LE L++  N
Sbjct: 281 YNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 479 FFNGSIPESLGQLTALRRLNLNGNTLSGR 507
              G        L  L+ L+L+ +  S R
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 7e-07
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTI-ASLEVLDLSYNFFNGSIPE 486
            N  L     +  +    L+S+NL  N I        G    +L  LD+ +N F+ +   
Sbjct: 569 LNN-LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

Query: 487 SLGQLTALRRLNLNGNTLSGRV----PAALGGRLL 517
               +  +   + N   LS       P    G  +
Sbjct: 628 IAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPV 662

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA--------IPSSLGTIASLEVLDLS 476
           + + N      LP  +  L  +Q IN++ N               +       ++++ + 
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 477 YN-FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           YN      +  SL ++  L  L    N L G    A G 
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGS 351

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.3 bits (196), Expect = 1e-15
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 13/114 (11%)

Query: 428 DNQGLRGFLPN-GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVL------DLSYNFF 480
            N+ L     +   + L +L  I+LS NS     P+     ++L+        D   N  
Sbjct: 497 FNK-LTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534
               PE +    +L +L +  N +   V   +   +   +  +  DN  +    
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNI---SVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.4 bits (191), Expect = 5e-15
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N      +   + K++ L  +    N + G    + G+   L  L+L+YN         
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANF 372

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALGGRLL 517
            G    +  L+   N L   +P     + +
Sbjct: 373 CGFTEQVENLSFAHNKLKY-IPNIFDAKSV 401

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.6 bits (189), Expect = 1e-14
 Identities = 20/157 (12%), Positives = 43/157 (27%), Gaps = 13/157 (8%)

Query: 384 NSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKL 443
                     WN +  +       G     +       + GL L+  G  G +P+ I +L
Sbjct: 50  QGFGTQPGANWNFNKELDMWGAQPGVSL--NSNGR---VTGLSLEGFGASGRVPDAIGQL 104

Query: 444 RHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNGSIPESLG--QLTALRRL 497
             L+ + L  +  +       P  +    S E        +  +  +       + L + 
Sbjct: 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 498 NLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534
            +N +     +        L         N  +  + 
Sbjct: 165 CINSDPQQKSIK-KSSRITLKDTQIGQLSN-NITFVS 199

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 426 GLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG--- 482
            +D +     L     K  ++ SINLS N I         T + L  ++L  N       
Sbjct: 416 SVDGKNFDP-LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474

Query: 483 ----SIPESLGQLTALRRLNLNGNTLSGRVPAALG 513
                  E+      L  ++L  N L+  +     
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFR 508

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 439 GISKLRHLQSINLSGNSIRG-------AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
               +  + +I+ S N I          +  +     ++  ++LS N  +    E     
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 492 TALRRLNLNGNTLSG 506
           + L  +NL GN L+ 
Sbjct: 457 SPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 4e-14
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 9/97 (9%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-------AIPSSLGTIASLEVLDLSY 477
           + L N  +  F     S    L SINL GN +             +      L  +DL +
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 478 NFFNGSIPE-SLGQLTALRRLNLNGNTLSGRVPAALG 513
           N       +     L  L  ++L+ N+ S   P    
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 10/101 (9%), Positives = 28/101 (27%), Gaps = 20/101 (19%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-------------------AIPSSLG 465
           +G  +  +  F+   + +L  L+   +  +                              
Sbjct: 188 IGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 466 TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSG 506
            +  L  +++        +P  L  L  ++ +N+  N    
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.6 bits (176), Expect = 3e-13
 Identities = 9/108 (8%), Positives = 25/108 (23%), Gaps = 20/108 (18%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             +++   +  +            I    N+I   +  ++  +  L    +  + F    
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 485 P-------------------ESLGQLTALRRLNLNGNTLSGRVPAALG 513
                                    L  L  + +       ++P  L 
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSL--GTIASLEVLDLSYNFFNG 482
           L L    +     N       +++++ + N ++  IP+     +++ +  +D SYN    
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGS 416

Query: 483 -------SIPESLGQLTALRRLNLNGNTLSGRVPAALG 513
                   +  +  +   +  +NL+ N +S        
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            NQ L G           L S+NL+ N I     +  G    +E L  ++N     IP  
Sbjct: 339 YNQ-LEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI 395

Query: 488 L--GQLTALRRLNLNGNTLSGRVPAALGG 514
                ++ +  ++ + N +          
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.5 bits (168), Expect = 3e-12
 Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 9/87 (10%)

Query: 436 LPNGISKLRHLQSI------NLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLG 489
            P        L+        +  GN      P  +    SL  L +  N     + E + 
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI- 585

Query: 490 QLTALRRLNLNGNTLSGRVPAALGGRL 516
               +  L++  N       + +   +
Sbjct: 586 -TPNISVLDIKDNPNISIDLSYVCPYI 611

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 3/78 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
                       P GI+    L  + +  N IR  +   +    ++ VLD+  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITP--NISVLDIKDNPNISID 603

Query: 485 PESLGQLTALRRLNLNGN 502
              +          L  +
Sbjct: 604 LSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 3/85 (3%)

Query: 431 GLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG--TIASLEVLDLSYNFFNGSIPESL 488
             R F P GIS     +         +            + L    ++ +    SI +S 
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 489 GQLTALRRLNLNGNTLSGRVPAALG 513
                  ++    N ++  V  A+ 
Sbjct: 180 RITLKDTQIGQLSNNITF-VSKAVM 203

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 17/99 (17%), Positives = 29/99 (29%)

Query: 448 SINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGR 507
           + N   +        SL +   +  L L     +G +P+++GQLT L  L L  +     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 508 VPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTS 546
                   +    S        +          P    S
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.8 bits (195), Expect = 4e-16
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + N  L   L   I  L  L+ ++L G +     P   G  A L+ L L       ++
Sbjct: 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P  + +LT L +L+L G     R+P+ + 
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + +D  GL   LP+ + +   L+++ L+ N +R A+P+S+ ++  L  L +        +
Sbjct: 109 MTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166

Query: 485 PESLGQ---------LTALRRLNLNGNTLSGRVPAALG 513
           PE L           L  L+ L L    +   +PA++ 
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA 203

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 436 LPNGISKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
            P        L+ + L   +++   +P  +  +  LE LDL        +P  + QL A 
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 495 RRLNLNGNTLS 505
             + +  +  +
Sbjct: 304 CIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA---------SLEVLDLSYNFFNGSIPE 486
           LP  I+ L  L+ +++        +P  L +           +L+ L L +     S+P 
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA 200

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALG 513
           S+  L  L+ L +  + LS  +  A+ 
Sbjct: 201 SIANLQNLKSLKIRNSPLSA-LGPAIH 226

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG--TIASLEVLDLSYNFFNGSI 484
            D            +   + Q    +G +++ A    L   T      L+L         
Sbjct: 41  ADRNRWH--SAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QF 96

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           P+   +L+ L+ + ++   L   +P  + 
Sbjct: 97  PDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 10/59 (16%), Positives = 22/59 (37%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
           LP  I +L  L+ ++L G      +PS +  + +  ++ +  +              A 
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 14/90 (15%), Positives = 26/90 (28%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    +     +       L ++ L+ N +     ++L    +L+ L       +   
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
              L     L  L L  N +S         
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 3/119 (2%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N  L       +S  + L+ +      I       L    +LE L L  N  +      
Sbjct: 90  ANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALGG-RLLHRASFNFTDNAGLCGIPGLRACGPHLST 545
                 L+ L+   N +       +   +     S N   N  + GI           +
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND-IAGIEPGAFDSAVFQS 206

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.6 bits (176), Expect = 3e-13
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA---SLEVLDLSYNFFN 481
           L L +  L          L  LQ +NL GN           ++     LE+L LS+   +
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 482 GSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                +   L  +  ++L+ N L+     AL  
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 3/118 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L     G+       +   + L+S+ L  N I             L+VLD   N  +   
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169

Query: 485 PESLGQLTALRR--LNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 540
            E +  L       LNLNGN ++G  P A    +    +F  T N  +    GL+   
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI-FKGLKNST 226

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 3e-12
 Identities = 17/90 (18%), Positives = 29/90 (32%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L      L        S+L +L  ++L+   I      +  +   L+ L L+ N      
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
             +L    AL+ L      +S      L  
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFIPLHN 127

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.1 bits (167), Expect = 4e-12
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + L          N       LQ ++L+   +   +PS L  +++L+ L LS N F    
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPA 510
             S     +L  L++ GNT    +  
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.1 bits (167), Expect = 4e-12
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGS 483
           L L              +   L+ ++L+   ++     S    +  L+VL+LS++  + S
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAALG 513
             +    L AL+ LNL GN           
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 6e-12
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTAL 494
           LP+G+  L  L+ + LS N        S     SL  L +  N     +    L  L  L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 495 RRLNLNGNTLSG 506
           R L+L+ + +  
Sbjct: 353 RELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.0 bits (164), Expect = 9e-12
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           L L             S    L  +++ GN+ R  + +  L  + +L  LDLS++    S
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 484 --IPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                 L  L+ L+ LNL+ N        A   
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 434 GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLT 492
                 +  L HLQS+NLS N        +      LE+LDL++        +S    L 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 493 ALRRLNLNGNTLSGRVPAALGG 514
            L+ LNL+ + L         G
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDG 447

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L     +  + L+ +  ++LS N +  +   +L  +  +  L+L+ N  +  +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  L  L+  R +NL  N L  
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 5e-11
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 428 DNQ--GLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP 485
            N          N +  L  L+ + LS   +      +  ++  +  +DLS+N    S  
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 486 ESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 527
           E+L  L  +  LNL  N +S  +P+ L   L  + + N   N
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPSLLPI-LSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 7e-11
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLR--HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG 482
              ++       P     L    ++SINL  +       ++    + L+ LDL+    + 
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291

Query: 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            +P  L  L+ L++L L+ N        +   
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 428 DNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-- 484
             + L+          L  L+ +NLS + +  +       + +L+ L+L  N F      
Sbjct: 409 FTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 485 -PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
              SL  L  L  L L+   LS     A   
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
            +N GL   +P  +      + +  S N +     ++   + +L  LDL+         +
Sbjct: 19  CENLGLNE-IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
           +      L  L L  N L      AL G
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSG 103

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 4/106 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEV--LDLSYNFFNG 482
           L L +  +             L+ ++   N+I       + ++       L+L+ N    
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-A 192

Query: 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHR-ASFNFTDN 527
            I          + LN  G      +   L    +       F D 
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 9e-09
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 425 LGLDNQGLRGFLPNGIS--KLRHLQSINLSGNSIRGAIPSSLGTIA--SLEVLDLSYNFF 480
           L          +  G+    ++ L              P+    +   S+E ++L  ++F
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                 +    + L+ L+L    LS  +P+ L G
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 15/83 (18%), Positives = 21/83 (25%), Gaps = 4/83 (4%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLG--TIASLEVLDLSYNFFNGSIPESLGQLTA 493
           +  G       QS+N  G      I   L   TI SL +            P     L  
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 494 --LRRLNLNGNTLSGRVPAALGG 514
             +  +NL  +            
Sbjct: 254 MSVESINLQKHYFFNISSNTFHC 276

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 15/108 (13%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + L +  L       +S L+ +  +NL+ N I   +PS L  ++    ++L  N  + + 
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563

Query: 485 PESLGQLTALRR-LNLNGNTLSGRV------PAALGGRLLHRASFNFT 525
                           N   L          P  L G  L  +    +
Sbjct: 564 -----SNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRL--SDVTLS 604

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.7 bits (186), Expect = 2e-14
 Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 9/89 (10%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG---- 482
            D            S L+ L  + L        +P  L  +  L+ L+++ N        
Sbjct: 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533

Query: 483 -----SIPESLGQLTALRRLNLNGNTLSG 506
                 + +       ++   +  N L  
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNLEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.8 bits (181), Expect = 9e-14
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 436 LPNGI--SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY------NFFNGSIPES 487
           L +    + L +L ++++S N      P+     + L+   + +      N      P  
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALGGRL 516
           +    +L +L +  N +   V   L  +L
Sbjct: 802 ITTCPSLIQLQIGSNDIRK-VDEKLTPQL 829

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.8 bits (181), Expect = 1e-13
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 12/92 (13%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG---------AIPSSLGTIASLEVLDL 475
           + L N      LP+ +  L  LQS+N++ N              +     T   +++  +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 476 SYNFFNGSIPES--LGQLTALRRLNLNGNTLS 505
            YN      P S  L ++  L  L+   N + 
Sbjct: 556 GYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.4 bits (180), Expect = 1e-13
 Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 20/120 (16%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-------------------AIPSSLG 465
           +G     +  F+   I +L  LQ I  + +                           S  
Sbjct: 430 IGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488

Query: 466 TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFT 525
            +  L  ++L        +P+ L  L  L+ LN+  N              L        
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 10/106 (9%)

Query: 436 LPNGISKLRHLQSINL------SGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLG 489
            P        L++  +       GN I    P+ + T  SL  L +  N     + E L 
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL- 825

Query: 490 QLTALRRLNLNGNTL-SGRVPAALGGRLLHRASFNFTDNAGLCGIP 534
               L  L++  N   S  V +             +     + G  
Sbjct: 826 -TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 436 LPN--GISKLRHLQSINLSGNSIRGAIPSSLGTI-----ASLEVLDLSYNFFNGSIPESL 488
           +PN      +  + S++ S N I     +   ++      +   + LSYN       E  
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 489 GQLTALRRLNLNGNTLS 505
              + +  + L+ N ++
Sbjct: 694 ATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ-LTALR 495
              + K+  L  ++   N +R     + GT   L  L L YN     IPE        + 
Sbjct: 566 SASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622

Query: 496 RLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 527
            L  + N L           +    S +F+ N
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN 654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 7/79 (8%)

Query: 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF-------NGSIPES 487
                  K  +  ++ LS N I+        T + +  + LS N               +
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 488 LGQLTALRRLNLNGNTLSG 506
                 L  ++L  N L+ 
Sbjct: 724 YKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 3/142 (2%)

Query: 395 NGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGN 454
             D  VP Q   +    + D  + K + + L   N        N      +  + N   +
Sbjct: 252 TKDANVPIQLKETAEYIK-DYKALKAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKELD 309

Query: 455 SIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                    L     +  L L+     G +P+++GQLT L+ L+   ++ +       G 
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFGD 368

Query: 515 RLLHRASFNFTDNAGLCGIPGL 536
             L         +        +
Sbjct: 369 EELTPDMSEERKHRIRMHYKKM 390

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 26/203 (12%), Positives = 59/203 (29%), Gaps = 18/203 (8%)

Query: 326 YTALVLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNS 385
           YT    +        T +V           +       I   E+    ++ +AL+ +  +
Sbjct: 221 YTTYSQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEA 280

Query: 386 LDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWV-IDGLGLDNQGLRGFLPNGISKLR 444
           LD  + + +               +  F++    W    G+ LDN G             
Sbjct: 281 LDGKN-WRYYSGTINNT---IHSLNWNFNKELDMWGDQPGVDLDNNG------------- 323

Query: 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTL 504
            +  ++L+G   +G +P ++G +  L+VL    +    S      +           + +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 505 SGRVPAALGGRLLHRASFNFTDN 527
                             +   +
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQD 406

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNGS 483
              +   +    P GI+    L  + +  N IR  +   L     L +LD++ N   +  
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLTP--QLYILDIADNPNISID 843

Query: 484 IPESLGQLTA-LRRLNLNGNTL 504
           +      + A +  L  +    
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 21/107 (19%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG---- 482
             N  ++    +    L+  Q I    N I   I  ++  +  L+++  + + F      
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQ-IGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIA 466

Query: 483 ---------------SIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
                          +   S   L  L  + L       ++P  L  
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPS--SLGTIASLEVLDLSYNFFNGSIPESLG--- 489
           +P    +    ++ +  S N ++  IP+  +  ++  +  +D SYN   GS   ++    
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKI-GSEGRNISCSM 667

Query: 490 ---QLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 527
              +      + L+ N +    P  L       ++   ++N
Sbjct: 668 DDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNN 707

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    +          L HL ++ L+GN I+   P S   + SLE L           
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 485 PESLGQLTALRRLNLNGNTLSG-RVPAALGG 514
              +GQL  L++LN+  N +   ++PA    
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.5 bits (181), Expect = 7e-14
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N      L N  +   +L  ++LS   +         T+  L++L++S+N         
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 527
             QL +L  L+ + N +       L       A FN T+N
Sbjct: 517 YNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 21/81 (25%), Positives = 31/81 (38%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L          L  LQ +N+S N++     S    + SL  LD S+N    S 
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 485 PESLGQLTALRRLNLNGNTLS 505
                   +L   NL  N+++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.4 bits (173), Expect = 6e-13
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPE 486
            N  ++ F P   S L  L+++      +       +G + +L+ L++++NF +   +P 
Sbjct: 89  GNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
               LT L  ++L+ N +       L  
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQF 175

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 1/86 (1%)

Query: 429 NQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
           N  L+       S    LQ ++LS   I      +   +  L  L L+ N      P S 
Sbjct: 42  NP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100

Query: 489 GQLTALRRLNLNGNTLSGRVPAALGG 514
             LT+L  L      L+      +G 
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQ 126

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.1 bits (167), Expect = 4e-12
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
           +      L  LQ ++   ++++     S+  ++  L  LD+SY             LT+L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 495 RRLNLNGNTLSGRVPAALGGRLLH 518
             L + GN+      + +     +
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTN 474

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
             +Q L   +P+ I      ++I+LS N ++     S    + L+ LDLS         +
Sbjct: 18  CMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
           +   L  L  L L GN +    P +  G
Sbjct: 75  AWHGLHHLSNLILTGNPIQSFSPGSFSG 102

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGS 483
           L      L       I +L  L+ +N++ N I    +P+    + +L  +DLSYN+    
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168

Query: 484 IPESLGQLTALR----RLNLNGNTLS 505
               L  L         L+++ N + 
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSL----GTIASLEVLDLSYNFFNGSIPESLGQL 491
           LP   S L +L  ++LS N I+    + L            LD+S N  +  I +   Q 
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG 203

Query: 492 TALRRLNLNGNTLSGRVPAALGGRL 516
             L  L L GN  S  +       L
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNL 228

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    L+ F    +  L+ L    L+ N     I      + SL  LDLS N  + S 
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSL---TLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSG 366

Query: 485 PESLGQL--TALRRLNLNGNTLS 505
             S   L   +LR L+L+ N   
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 432 LRGFLPNGISKLRHL----QSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
           ++    N +  LR       S+++S N I   I         L  L L  NF + +I ++
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKT 223

Query: 488 LGQ-LTALRRLNLNGNTLSG 506
             Q L  L    L       
Sbjct: 224 CLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
                 L ++ +++L+G SI+      +      + L +         P     L  L+ 
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK-QFPTL--DLPFLKS 332

Query: 497 LNLNGNTLS 505
           L L  N  S
Sbjct: 333 LTLTMNKGS 341

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 10/99 (10%), Positives = 23/99 (23%), Gaps = 8/99 (8%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLE--------VLDLSYNF 479
            N      +   +  L  L    L     +      +   + +E           L+Y  
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272

Query: 480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518
                      L  +  ++L G ++          +   
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS 311

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 17/67 (25%), Positives = 34/67 (50%)

Query: 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 497
           N IS L +L+ + + G  +      +L  + SL +LD+S++  + SI   +  L  +  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 498 NLNGNTL 504
           +L+ N  
Sbjct: 142 DLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +  + +       +S L  L  +++S ++   +I + + T+  +  +DLSYN     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 485 PESLGQLTALRRLNLNGNTLS 505
              L  L  L+ LN+  + + 
Sbjct: 153 -MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
           GI    +++ + ++         + +  +++LE L +           +L  LT+L  L+
Sbjct: 61  GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 499 LNGNTLSGRVPAALGG 514
           ++ +     +   +  
Sbjct: 119 ISHSAHDDSILTKINT 134

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.8 bits (164), Expect = 5e-12
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    +     N +  L  L+ +N+  N I     S L  ++ L  L L+ N      
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
            E +G LT L  L L+ N ++ 
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 6e-11
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L  L S+ L+ N +       +G + +L  L LS N      P  L  L+ +   +
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339

Query: 499 LNGNTLS 505
                + 
Sbjct: 340 FANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.9 bits (154), Expect = 8e-11
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + N  +     + ++ L  L  + +  N I     +++  +  L++L++  N  +   
Sbjct: 226 LKIGNNKITDL--SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD-- 279

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
              L  L+ L  L LN N L       +GG
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
            + +  L +L+ + L+ ++I    P  L  +  +  L+L  N  N S    L  +T L  
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANH-NLSDLSPLSNMTGLNY 159

Query: 497 LNLNGNTLSG 506
           L +  + +  
Sbjct: 160 LTVTESKVKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 7e-10
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L+   +    P  +S L  L ++ +  N I     S+L  + +L  L L+ +  +   
Sbjct: 71  LNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDIS 126

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           P  L  LT +  LNL  N       + L  
Sbjct: 127 P--LANLTKMYSLNLGANHNLS-DLSPLSN 153

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
           GI  L +L+ +NL+GN I    P  L  +  L  L +  N    +   +L  LT LR L 
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN--KITDISALQNLTNLRELY 116

Query: 499 LNGNTLSG 506
           LN + +S 
Sbjct: 117 LNEDNISD 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N  L     + +S +  L  + ++ + ++   P  +  +  L  L L+YN      P  
Sbjct: 141 ANHNLS--DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-- 194

Query: 488 LGQLTALRRLNLNGNTLSG 506
           L  LT+L       N ++ 
Sbjct: 195 LASLTSLHYFTAYVNQITD 213

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ +  L S+ +  N I    P  L  ++ L  L++  N  +     ++  LT L+ LN
Sbjct: 216 PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLN 271

Query: 499 LNGNTLSG 506
           +  N +S 
Sbjct: 272 VGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 8e-09
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            I+ L  L S++L+ N I    P  L ++ SL       N      P  +  +T L  L 
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLK 227

Query: 499 LNGNTLSG 506
           +  N ++ 
Sbjct: 228 IGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L+   +    P  ++ L  L       N I    P  +  +  L  L +  N      
Sbjct: 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  L  L+ L  L +  N +S 
Sbjct: 238 P--LANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             L    +   +     +L  +  + ++G  +       +  + +LE L+L+ N      
Sbjct: 27  AVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDIS 82

Query: 485 PESLGQLTALRRLNLNGNTLS 505
           P  L  L  L  L +  N ++
Sbjct: 83  P--LSNLVKLTNLYIGTNKIT 101

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 436 LPNGISK------LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLG 489
           LP  I++      L       L   S+   +      + S+  L ++      SI   + 
Sbjct: 8   LPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG-IE 63

Query: 490 QLTALRRLNLNGNTLSG 506
            LT L  LNLNGN ++ 
Sbjct: 64  YLTNLEYLNLNGNQITD 80

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478
           L L+N  L       I  L +L ++ LS N I    P  L +++ ++  D +  
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 3/108 (2%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           +   +     L++++LS N +   +     + A +  + L  N     I ++L     L 
Sbjct: 184 VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 496 RLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHL 543
             +L GN            +     +        L G        P L
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             + +  L+  L +      +++ ++LSGN +     + L     LE+L+LS N      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ET 73

Query: 485 PESLGQLTALRRLNLNGNTLS 505
            + L  L+ LR L+LN N + 
Sbjct: 74  LD-LESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
               +   ++ +S++ A+ S   +  +++ LDLS N  +      L   T L  LNL+ N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 503 TLS 505
            L 
Sbjct: 69  VLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N  L       ++    L+ +NLS N +       L ++++L  LDL+ N+      + 
Sbjct: 43  GNP-LSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QE 94

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALGGRL 516
           L    ++  L+   N +S RV  + G   
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQGK 122

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNL 499
           S+ +  ++I L+ N I        G  + ++ LDL  N  +  +  E       L  LNL
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 500 NGNTLS 505
             N + 
Sbjct: 177 QYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +     +++++ + N+I   +  S G     + + L+ N          G  + ++ L+L
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 500 NGNTLSGRVPAALGGRL 516
             N +     A L    
Sbjct: 152 KLNEIDTVNFAELAASS 168

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPE 486
           +N+ +             +Q ++L  N I          +  +LE L+L YNF    +  
Sbjct: 129 NNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG 186

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
            +     L+ L+L+ N L+  +      
Sbjct: 187 QV-VFAKLKTLDLSSNKLA-FMGPEFQS 212

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +  L  L++++L+ N +       L    S+E L  + N  +  +  S GQ    + + L
Sbjct: 76  LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRGQG--KKNIYL 127

Query: 500 NGNTLSGRVPAALGG 514
             N ++       G 
Sbjct: 128 ANNKITMLRDLDEGC 142

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 10/56 (17%), Positives = 21/56 (37%)

Query: 459 AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           AI          ++  ++ +    ++         ++ L+L+GN LS    A L  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 3/108 (2%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           +   +     L++++LS N +   +     + A +  + L  N     I ++L     L 
Sbjct: 184 VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 496 RLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHL 543
             +L GN            +     +        L G        P L
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             + +  L+  L +      +++ ++LSGN +     + L     LE+L+LS N      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ET 73

Query: 485 PESLGQLTALRRLNLNGNTLS 505
            + L  L+ LR L+LN N + 
Sbjct: 74  LD-LESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
               +   ++ +S++ A+ S   +  +++ LDLS N  +      L   T L  LNL+ N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 503 TLSG 506
            L  
Sbjct: 69  VLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNL 499
           S+ +  ++I L+ N I        G  + ++ LDL  N  +  +  E       L  LNL
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 500 NGNTLS 505
             N + 
Sbjct: 177 QYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGS 483
           + L N  +             +Q ++L  N I          +  +LE L+L YNF    
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           +   +     L+ L+L+ N L+  +      
Sbjct: 184 VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQS 212

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 8e-09
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +     +++++ + N+I   +  S G     + + L+ N          G  + ++ L+L
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 500 NGNTLSGRVPAALGGRL 516
             N +     A L    
Sbjct: 152 KLNEIDTVNFAELAASS 168

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +  L  L++++L+ N +       L    S+E L  + N  +  +  S GQ    + + L
Sbjct: 76  LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRGQG--KKNIYL 127

Query: 500 NGNTLSGRVPAALGG 514
             N ++       G 
Sbjct: 128 ANNKITMLRDLDEGC 142

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 10/56 (17%), Positives = 21/56 (37%)

Query: 459 AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           AI          ++  ++ +    ++         ++ L+L+GN LS    A L  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 9/72 (12%), Positives = 19/72 (26%), Gaps = 1/72 (1%)

Query: 442 KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501
           K +    ++  G+     +       A    +D     +   I +   +  A   L    
Sbjct: 311 KRKEHALLSGQGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 502 NTLSGRVPAALG 513
             L  +V     
Sbjct: 370 KALDEQVSNGRR 381

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    ++         L HL ++ L+GN I+     +   ++SL+ L           
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 485 PESLGQLTALRRLNLNGNTL-SGRVPAALGG 514
              +G L  L+ LN+  N + S ++P     
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 17/81 (20%), Positives = 31/81 (38%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    LR            LQ ++LS   I+     +  +++ L  L L+ N      
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +   L++L++L      L+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 6e-10
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           L + +   R       + L  L+ + ++GNS +          + +L  LDLS       
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
            P +   L++L+ LN+  N L 
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 12/78 (15%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
           + +    L  L+ ++   ++++     S   ++ +L  LD+S+     +       L++L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 495 RRLNLNGNTLSGRVPAAL 512
             L + GN+        +
Sbjct: 448 EVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGS 483
           L      L       I  L+ L+ +N++ N I+   +P     + +LE LDLS N     
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 484 IPESLGQLTALR----RLNLNGNTLS 505
               L  L  +      L+L+ N ++
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L +     +      I ++LR+L  ++LS   +    P++  +++SL+VL+++ N     
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 484 IPESLGQLTALRRLNLNGN 502
                 +LT+L+++ L+ N
Sbjct: 510 PDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
                    +P+ +      ++++LS N +R     S  +   L+VLDLS          
Sbjct: 14  CMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALGG 514
           +   L+ L  L L GN +      A  G
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSG 98

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIR--GAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L     +G        L  L+ ++LS N +   G    S     SL+ LDLS+N    ++
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +   L  L  L+   + L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEV----LDLSYNFFNGSIPESLGQL 491
           LP   S L +L+ ++LS N I+    + L  +  + +    LDLS N  N  I     + 
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 492 TALRRLNLNGNTLSGRVPAALGGRL 516
             L +L L  N  S  V       L
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGL 224

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 442 KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN--GSIPESLGQLTALRRLNL 499
           KL+ L+ +  + N    A   S   + SLE LDLS N  +  G   +S    T+L+ L+L
Sbjct: 323 KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 500 NGNTLS 505
           + N + 
Sbjct: 381 SFNGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQ----SINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           L L +  ++      +  L  +     S++LS N +   I         L  L L  NF 
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFD 212

Query: 481 NGSIPE-SLGQLTALRRLNLNGNTLSG 506
           + ++ +  +  L  L    L       
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 435 FLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTA 493
            L     + L  LQ +N++ N ++         + SL+ + L  N ++ S P     +  
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR----IDY 539

Query: 494 LRR-LNLNGNTLSGRV 508
           L R LN N     G  
Sbjct: 540 LSRWLNKNSQKEQGSA 555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +   GL   LP+ +    H+ ++ +  N++  ++P+       L  L++S N    S+
Sbjct: 45  LNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT-SL 96

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAAL 512
           P     L  L   +     L   +P+ L
Sbjct: 97  PVLPPGLLELSIFSNPLTHLP-ALPSGL 123

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.1 bits (156), Expect = 7e-11
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP   S+L+ L    +SGN +  ++P        L  L +  N     +PESL  L++  
Sbjct: 236 LPVLPSELKEL---MVSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSET 287

Query: 496 RLNLNGNTLS 505
            +NL GN LS
Sbjct: 288 TVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
                 +N+  + +   +P  L     +  L +  N    S+P    +   LR L ++GN
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPE---LRTLEVSGN 91

Query: 503 TLSGRVPAALGG 514
            L+  +P    G
Sbjct: 92  QLT-SLPVLPPG 102

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP   S+L  L       N +  ++P        L+ L +S N    S+P    +L  L 
Sbjct: 156 LPALPSELCKL---WAYNNQLT-SLPMLPS---GLQELSVSDNQLA-SLPTLPSELYKLW 207

Query: 496 RLNLNGNTL 504
             N    +L
Sbjct: 208 AYNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 27/109 (24%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT--- 492
           LP   S+L  L       N +  ++P+       L+ L +S N    S+P    +L    
Sbjct: 196 LPTLPSELYKL---WAYNNRLT-SLPALPS---GLKELIVSGNRLT-SLPVLPSELKELM 247

Query: 493 --------------ALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 527
                          L  L++  N L+ R+P +L   L    + N   N
Sbjct: 248 VSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESL-IHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 20/93 (21%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGT--------------IASLEVLDLSYNFFN 481
           LP     L  L   +     +  A+PS L                   L+ L +S N   
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA 154

Query: 482 GSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            S+P    +L    +L    N L+  +P    G
Sbjct: 155 -SLPALPSELC---KLWAYNNQLT-SLPMLPSG 182

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + L    L   + +   K++ L+ + +S N +  A+      I +L+VLDLS+N     +
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 316

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +  Q   L  L L+ N++ 
Sbjct: 317 ERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 5e-09
 Identities = 13/97 (13%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           V   + +D Q    +       L + + +    +++R    + L +   +E+L+L+    
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 481 NGSIP-ESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
              I   +      +++L +  N +   +P  +   +
Sbjct: 88  E-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNV 122

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 6e-09
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           +   N  +R      +   R ++ +NL+   I      +     +++ L + +N     +
Sbjct: 56  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YL 114

Query: 485 PESLGQ-LTALRRLNLNGNTLS 505
           P  + Q +  L  L L  N LS
Sbjct: 115 PPHVFQNVPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           L      +  L+ ++LS N +   +  +      LE L L +N    ++   L     L+
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLK 348

Query: 496 RLNLNGNTLS 505
            L L+ N   
Sbjct: 349 NLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
              +     L  ++LS N +   +      +  LE L +S N    ++      +  L+ 
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 497 LNLNGNTLSGRVPAALGG 514
           L+L+ N L   V      
Sbjct: 306 LDLSHNHLL-HVERNQPQ 322

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ-LTA 493
           LP  +   +  L  + L  N +             L  L +S N     I +   Q  T+
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTS 172

Query: 494 LRRLNLNGNTLS 505
           L+ L L+ N L+
Sbjct: 173 LQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 8e-07
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
           LP GI      L ++++S N++      +     SL+ L LS N     +   L  + +L
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 194

Query: 495 RRLNLNGNTLS 505
              N++ N LS
Sbjct: 195 FHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + N  L     +       LQ++ LS N +   +   L  I SL   ++SYN      
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL---- 204

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGGRL--LHRASFNFTDNAGLCGIPGLR 537
             +L    A+  L+ + N+++  V   +   L  L     N TD A L   PGL 
Sbjct: 205 -STLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 257

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 7/72 (9%), Positives = 23/72 (31%), Gaps = 2/72 (2%)

Query: 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTA 493
            + + +        +++   +          T+ + +++    +     +P   L     
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76

Query: 494 LRRLNLNGNTLS 505
           +  LNLN   + 
Sbjct: 77  VELLNLNDLQIE 88

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L  D  G++    +G+  L +L  IN S N +    P  L  +  L  + ++ N      
Sbjct: 51  LQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 106

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  L  LT L  L L  N ++ 
Sbjct: 107 P--LANLTNLTGLTLFNNQITD 126

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    +    P  +S L  LQ +    N +     SSL  + ++  L   +N  +   
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLT 369

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  L  LT + +L LN    + 
Sbjct: 370 P--LANLTRITQLGLNDQAWTN 389

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L+   L    P  IS L++L  + L  N+I    P  + ++  L+ L    N  +   
Sbjct: 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-- 345

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
             SL  LT +  L+   N +S 
Sbjct: 346 VSSLANLTNINWLSAGHNQISD 367

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
              ++ L +L  ++L+ N I    P  L  +  L  L L  N  +   P  L  LTAL  
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 291

Query: 497 LNLNGNTLSG 506
           L LN N L  
Sbjct: 292 LELNENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + +  +     + ++KL +L+S+  + N I    P  LG + +L+ L L+ N      
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-- 235

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
             +L  LT L  L+L  N +S 
Sbjct: 236 IGTLASLTNLTDLDLANNQISN 257

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           +   N  L    P  +  L  L  I ++ N I    P  L  + +L  L L  N      
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  L  LT L RL L+ NT+S 
Sbjct: 129 P--LKNLTNLNRLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L  L ++ L+ N +     S +  + +L  L L +N  +   P  +  LT L+RL 
Sbjct: 282 PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337

Query: 499 LNGNTLSG 506
              N +S 
Sbjct: 338 FYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N  +    P  +S L  L  + L  N I     S L  + +L  L+L+ N      
Sbjct: 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDIS 303

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  +  L  L  L L  N +S 
Sbjct: 304 P--ISNLKNLTYLTLYFNNISD 323

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             L    +   +    + L  + ++      I+      +  + +L  ++ S N      
Sbjct: 29  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDIT 84

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
           P  L  LT L  + +N N ++ 
Sbjct: 85  P--LKNLTKLVDILMNNNQIAD 104

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 4/68 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
             + L       L   ++   +      +  +  L            + +  L  L ++N
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQIN 74

Query: 499 LNGNTLSG 506
            + N L+ 
Sbjct: 75  FSNNQLTD 82

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +  L +L  + LS N+I     S+L  + SL+ L         +  + L  LT L RL++
Sbjct: 130 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDI 184

Query: 500 NGNTLSG 506
           + N +S 
Sbjct: 185 SSNKVSD 191

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  +     + +S L  LQ ++   N +    P  L  + +LE LD+S N    S 
Sbjct: 139 LELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKV--SD 191

Query: 485 PESLGQLTALRRLNLNGNTLSG 506
              L +LT L  L    N +S 
Sbjct: 192 ISVLAKLTNLESLIATNNQISD 213

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 9/70 (12%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
            + ++ L ++  ++   N I    P  L  +  +  L L+   +  +       ++    
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 497 L-NLNGNTLS 505
           + N+ G  ++
Sbjct: 404 VKNVTGALIA 413

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L   +  +    P  ++ L  +  + L+  +   A  +      ++ + +   N     I
Sbjct: 358 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKA---NVSIPNTVKNVTGALI 412

Query: 485 -PESLGQLTALRRLNLNGNTLS 505
            P ++    +    ++  N  S
Sbjct: 413 APATISDGGSYTEPDITWNLPS 434

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP  +     L+ I++  NS++  +P       SLE +    N     +PE L  L  L 
Sbjct: 146 LPE-LQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELPE-LQNLPFLT 198

Query: 496 RLNLNGNTLS 505
            +  + N+L 
Sbjct: 199 AIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L      L   LP     L+ L   N +  ++    P        LE L +S N     +
Sbjct: 96  LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KL 146

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           PE L   + L+ ++++ N+L  ++P    
Sbjct: 147 PE-LQNSSFLKIIDVDNNSLK-KLPDLPP 173

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 8/78 (10%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP  +  L  L +I    NS++  +P       SLE +    N         L  L  L 
Sbjct: 188 LPE-LQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNIL--EELPELQNLPFLT 240

Query: 496 RLNLNGNTLSGRVPAALG 513
            +  + N L   +P    
Sbjct: 241 TIYADNNLLK-TLPDLPP 257

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 19/101 (18%)

Query: 425 LGLDNQGLRGFLPNGISKLR-------------HLQSINLSGNSIRGAIPSSLGTIASLE 471
                       P G  + R                 + L+   +  ++P        LE
Sbjct: 39  YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPP---HLE 94

Query: 472 VLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
            L  S N     +PE    L +L   N N   LS  +P  L
Sbjct: 95  SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD-LPPLL 133

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
              +  L  L +I    N ++  +P       SLE L++  N+    +PE    LT L  
Sbjct: 230 LPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDV 284

Query: 497 LNLNGNTLSGRVP 509
                + LS   P
Sbjct: 285 SENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 25/94 (26%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT--- 492
           LP    +L  L     S N +   +P       +L+ L + YN      P+    +    
Sbjct: 332 LPALPPRLERL---IASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLR 383

Query: 493 -------------ALRRLNLNGNTLSGRVPAALG 513
                         L++L++  N L    P    
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPE 416

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           L      L +L   N S N IR ++        SLE L++S N     +P    +L    
Sbjct: 292 LSELPPNLYYL---NASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPPRLE--- 340

Query: 496 RLNLNGNTLSGRVPAALG 513
           RL  + N L+  VP    
Sbjct: 341 RLIASFNHLA-EVPELPQ 357

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 15/92 (16%)

Query: 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTA- 493
           F+         LQ      +++   +P     + S      +++ +  + P   G+    
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 494 ------------LRRLNLNGNTLSGRVPAALG 513
                          L LN   LS  +P    
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLS-SLPELPP 91

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 9/81 (11%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +++      +P     L+ L   ++  N +R   P       S+E L ++        
Sbjct: 382 LRMNSH--LAEVPELPQNLKQL---HVETNPLR-EFPDIPE---SVEDLRMNSERVVDPY 432

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +      L       +   
Sbjct: 433 EFAHETTDKLEDDVFEHHHHH 453

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + L    L   + +   K++ L+ + +S N +  A+      I +L+VLDLS+N     +
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 310

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +  Q   L  L L+ N++ 
Sbjct: 311 ERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           +   N  +R      +   R ++ +NL+   I      +     +++ L + +N     +
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YL 108

Query: 485 PESLGQ-LTALRRLNLNGNTLS 505
           P  + Q +  L  L L  N LS
Sbjct: 109 PPHVFQNVPLLTVLVLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 11/85 (12%), Positives = 32/85 (37%)

Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           V   + +D Q    +       L + + +    +++R    + L +   +E+L+L+    
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 481 NGSIPESLGQLTALRRLNLNGNTLS 505
                 +      +++L +  N + 
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIR 106

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           L      +  L+ ++LS N +   +  +      LE L L +N    ++   L     L+
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLK 342

Query: 496 RLNLNGNTLS 505
            L L+ N   
Sbjct: 343 NLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +     L  ++LS N +   +      +  LE L +S N    ++      +  L+ L+L
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

Query: 500 NGNTLSGRVPAALGG 514
           + N L   V      
Sbjct: 303 SHNHLL-HVERNQPQ 316

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    +R   P+    +  L  + L  N +             L  L +S N     I
Sbjct: 98  LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RI 156

Query: 485 PESLGQ-LTALRRLNLNGNTLS 505
            +   Q  T+L+ L L+ N L+
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + N  L     +       LQ++ LS N +   +   L  I SL   ++SYN      
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL---- 198

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGGRL--LHRASFNFTDNAGLCGIPGLR 537
             +L    A+  L+ + N+++  V   +   L  L     N TD A L   PGL 
Sbjct: 199 -STLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 251

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           ++    ++ ++ S NSI   +         L +L L +N         L     L  ++L
Sbjct: 201 LAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDL 255

Query: 500 NGNTLS 505
           + N L 
Sbjct: 256 SYNELE 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 6/71 (8%), Positives = 21/71 (29%)

Query: 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
            + + +        +++   +          T+ + +++    +         L     +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 495 RRLNLNGNTLS 505
             LNLN   + 
Sbjct: 72  ELLNLNDLQIE 82

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 5e-10
 Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 15/161 (9%)

Query: 345 TLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQH 404
            L P+     +   + +  +  +      E ++    LK  +D P R  +  D       
Sbjct: 376 ELEPENKWCLLTIILLMRALDPLLY--EKETLQYFSTLKA-VD-PMRAAYLDDLRSKFLL 431

Query: 405 PWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSL 464
             S    ++           L L ++ L   +   + +L  +  ++LS N +R A+P +L
Sbjct: 432 ENSVLKMEYADVRV------LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPAL 482

Query: 465 GTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
             +  LEVL  S N    ++   +  L  L+ L L  N L 
Sbjct: 483 AALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 9e-09
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-S 483
           L L +  LR  LP  ++ LR L+ +  S N++   +   +  +  L+ L L  N     +
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSA 524

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
             + L     L  LNL GN+L 
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLC 546

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.1 bits (148), Expect = 6e-10
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLE----VLDLSYNFFNGSIPESLGQL 491
           LP     L  L   ++S N +  ++P+        E          N     IPE++  L
Sbjct: 175 LPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSL 229

Query: 492 TALRRLNLNGNTLSGRVPAALG 513
                + L  N LS R+  +L 
Sbjct: 230 DPTCTIILEDNPLSSRIRESLS 251

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.1 bits (140), Expect = 5e-09
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L+   L   LP+ +     +  + ++ N++  ++P       SLE LD   N  + ++
Sbjct: 64  LQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TL 115

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           PE       L+ L+++ N L+  +P     
Sbjct: 116 PELPAS---LKHLDVDNNQLT-MLPELPAL 141

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.7 bits (139), Expect = 7e-09
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
            G +       L      +     + L+  ++  ++P +L     + VL+++ N    S+
Sbjct: 42  PGENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNAL-ISL 95

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
           PE    L     L+   N LS  +P    
Sbjct: 96  PELPASLE---YLDACDNRLS-TLPELPA 120

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.0 bits (132), Expect = 5e-08
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           LP   + L+HL   ++  N +   +P      A LE ++   N     +PE       L 
Sbjct: 115 LPELPASLKHL---DVDNNQLT-MLPEL---PALLEYINADNNQLT-MLPELPTS---LE 163

Query: 496 RLNLNGNTLSGRVPAALG 513
            L++  N L+  +P    
Sbjct: 164 VLSVRNNQLT-FLPELPE 180

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQS----INLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
           L +    L   LP    +  H +          N I   IP ++ ++     + L  N  
Sbjct: 185 LDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

Query: 481 NGSIPESLGQLTALRRLNLNGNTLS 505
           +  I ESL Q TA    +      S
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFS 267

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 9e-10
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 432 LRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ 490
           LR             L S+NLS   ++  +P  L     L VLDLSYN  +   P S  +
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLD-RNP-SPDE 294

Query: 491 LTALRRLNLNGNTLSG 506
           L  +  L+L GN    
Sbjct: 295 LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ-LTA 493
             P     L+ L   N    +  G   +       L+ LDLS+N    +         + 
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254

Query: 494 LRRLNLNGNTLSGRVPAALGGRL 516
           L  LNL+   L  +VP  L  +L
Sbjct: 255 LNSLNLSFTGLK-QVPKGLPAKL 276

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 5/84 (5%)

Query: 427 LDNQGLRGFLPNGISKL-RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP 485
           +       +L      L   L+ ++++           +    +L  LDLS N   G   
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 486 ES----LGQLTALRRLNLNGNTLS 505
                   +   L+ L L    + 
Sbjct: 191 LISALCPLKFPTLQVLALRNAGME 214

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 425 LGLDNQGLRGFLPNGISKLRH--LQSINLSGNSIRGAIPSSLGTI-----ASLEVLDLSY 477
           L L+N  + G  P  + +     L  +NL   S      + L  +       L+VL ++ 
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQ 158

Query: 478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVP 509
                   E +    AL  L+L+ N   G   
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 425 LGL-DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L + + +          + L  L  + +   S+R     SL +I  +  L L  +     
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 484 IPESLGQLTALRRLNLNGNTLSG 506
           +      L+++R L L    L+ 
Sbjct: 188 LEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           I  L +    L   L    S L  ++ I +  + +     S    + SLE LDLS N   
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 482 GSIPES---LGQLTALRRLNLNGNTLS 505
               ++    G   +L+ L L+ N L 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 12/87 (13%)

Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA---SLEVLDLSYN 478
           +    L N   +G  P+       LQ++ LS N +R ++  +   +    +L  LD+S N
Sbjct: 346 MVEEYLKNSACKGAWPS-------LQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRN 397

Query: 479 FFNGSIPESLGQLTALRRLNLNGNTLS 505
            F+  +P+S      +R LNL+   + 
Sbjct: 398 TFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 22/81 (27%), Positives = 34/81 (41%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    +       +    +LQ + L  + I      +  ++ SLE LDLS N  +   
Sbjct: 31  LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90

Query: 485 PESLGQLTALRRLNLNGNTLS 505
               G L++L+ LNL GN   
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQ 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  +     +    L  L+ ++LS N +     S  G ++SL+ L+L  N +  ++
Sbjct: 55  LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TL 113

Query: 485 PES--LGQLTALRRLNLNGNTLSGRVPA 510
             +     LT L+ L +        +  
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRR 141

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           +P+       ++ +NLS   IR  + + +    +LEVLD+S N  + S       L  L+
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ--TLEVLDVSNNNLD-SFSLF---LPRLQ 454

Query: 496 RLNLNGNTLS 505
            L ++ N L 
Sbjct: 455 ELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
             ++     +P+G++    ++S++LS N I       L   A+L+VL L  +  N    +
Sbjct: 12  GRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 487 SLGQLTALRRLNLNGNTLS 505
           +   L +L  L+L+ N LS
Sbjct: 69  AFYSLGSLEHLDLSDNHLS 87

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 425 LGLDNQGLRGFLPNG-ISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNG 482
           L L     +          L +LQ++ +        I       + SL  L++       
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162

Query: 483 SIPESLGQLTALRRLNLNGNTLS 505
              +SL  +  +  L L+ +  +
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + N  L       + +L+ L    +S N ++  +P +      L V+ +S N      
Sbjct: 436 LDVSNNNLD-SFSLFLPRLQEL---YISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVP 489

Query: 485 PESLGQLTALRRLNLNGN 502
                +LT+L+++ L+ N
Sbjct: 490 DGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 425 LGLDNQGLRGFLPNGISKLRH--------LQSINLSGNSIRGAIPSSLGTIASLEVLDLS 476
                 GL  F P+    +          ++ +++    +   + +    +  ++ + + 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 477 YNFFNGSIPESLGQ-LTALRRLNLNGNTLS 505
            +     +P S  Q L +L  L+L+ N + 
Sbjct: 319 NSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 18/81 (22%), Positives = 35/81 (43%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  +          L+ L+ +NL+ N I      +   + +L+VL+LSYN      
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +   L  +  ++L  N ++
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIA-----SLEVLDLSYN 478
           L L+         +   S+   L+ + L  N ++ A  + L          L+VL L++N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518
           + N   P     LTALR L+LN N L+      L   L  
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEI 530

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L L +Q     +       L +L+ ++L  + I    P +   +  L  L L +   + +
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 484 I--PESLGQLTALRRLNLNGNTLS 505
           +        L AL RL+L+ N + 
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIR 136

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 19/81 (23%), Positives = 32/81 (39%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    +          L +LQ +NLS N +     S+   +  +  +DL  N      
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 485 PESLGQLTALRRLNLNGNTLS 505
            ++   L  L+ L+L  N L+
Sbjct: 355 DQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 425 LGLDNQGLRGFL--PNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFN 481
           L L   GL   +        L+ L  ++LS N IR   +  S G + SL+ +D S N   
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 482 GSIPESLGQLTA--LRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 527
                 L  L    L   +L  N+L  RV    G  +    +      
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 6/113 (5%)

Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           +    L          +    L HLQ + L+ N +    P     + +L  L L+ N   
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

Query: 482 GSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534
             +  +      L  L+++ N L    P       +  +  + T N  +C   
Sbjct: 518 -VLSHND-LPANLEILDISRNQLLAPNPDV----FVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI-PSSLGTIASLEVLDLSYNFFNGS 483
           L L    +R    +    L  LQ + L        I   +   + +L +LDL  +     
Sbjct: 29  LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
            P++   L  L  L L    LS
Sbjct: 89  HPDAFQGLFHLFELRLYFCGLS 110

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNLNG 501
           L   + + LS N IR    SS   +  L++L+L   +   +I  E+   L  LR L+L  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 502 NTLS 505
           + + 
Sbjct: 83  SKIY 86

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           L  +  I+L  N I      +   +  L+ LDL  N        ++  + ++  + L+GN
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGN 391

Query: 503 TLSGRVPAALGGRLLHRASFNFTDN---AGLCGIPGLR 537
            L       L   L+H +     +      L  +P L+
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ 429

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 422 IDGLGLDNQGLRGFLPNGISKLRH--LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF 479
           I G G     ++    N  + L    ++ ++LS   +         T+  L+VL+L+YN 
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301

Query: 480 FNGSIPESLGQLTALRRLNLNGNTLS 505
            N    E+   L  L+ LNL+ N L 
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGSI-----PESLGQLTA 493
           + ++ HLQ + L+ N               SLE L L  N    +       +    L+ 
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 494 LRRLNLNGNTLS 505
           L+ L LN N L+
Sbjct: 482 LQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 447 QSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSG 506
           +       ++   +P  L    + E L LS+N+       S   L  L+ L L       
Sbjct: 7   RIAFYRFCNLT-QVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 507 RVP 509
            + 
Sbjct: 63  TID 65

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 446 LQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRLNLNGNT 503
              I+LS N +    I   L  +  L++L L+ N F+    +    +  +L +L L  N 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 504 LSGRVPAALGGRLL 517
           L       L   + 
Sbjct: 463 LQLAWETELCWDVF 476

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRL 497
            + KL  L+ + LS N + G +        +L  L+LS N     S  E L +L  L+ L
Sbjct: 59  NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118

Query: 498 NLNGN 502
           +L   
Sbjct: 119 DLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 425 LGLDNQGL-RGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L LDN     G L     +   L+ ++     +  +I ++L  +  L+ L+LS N  +G 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGG 79

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
           +     +   L  LNL+GN + 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 445 HLQSINLSGNSI-RGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT 503
            ++ + L  +    G +         LE L         SI  +L +L  L++L L+ N 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNR 75

Query: 504 LSGRVPAALGGRLLHRASFNFTDN--AGLCGIPGLRACGPHLST 545
           +S      L  +  +    N + N    L  I  L+    +L +
Sbjct: 76  VS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL-ENLKS 117

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 21/78 (26%), Positives = 42/78 (53%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            N     FLP+  ++LR+L  ++LS   +    P++  +++SL+VL++S+N F       
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

Query: 488 LGQLTALRRLNLNGNTLS 505
              L +L+ L+ + N + 
Sbjct: 219 YKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSI--RGAIPSSLGTIASLEVLDLSYNFFNG 482
           L L++  L+        KL  L  ++LS N +  +G    S     SL+ LDLS+N    
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 91

Query: 483 SIPESLGQLTALRRLNLNGNTLS 505
           ++  +   L  L  L+   + L 
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L   +  L+      +   LR+L  +++S    R A       ++SLEVL ++ N F  +
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 484 IPE-SLGQLTALRRLNLNGNTLS 505
                  +L  L  L+L+   L 
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF--FNGSI 484
            +++GL   +P GI        + L  N ++         +  L  L LS N   F G  
Sbjct: 14  CNSKGLTS-VPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGG 514
            +S    T+L+ L+L+ N +   + +   G
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLG 99

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 12/78 (15%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
           + +    L  L+ ++   ++++     S+  ++ +L  LD+S+     +       L++L
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152

Query: 495 RRLNLNGNTLSGRVPAAL 512
             L + GN+        +
Sbjct: 153 EVLKMAGNSFQENFLPDI 170

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L    P   + L  LQ +N+S N+           + SL+VLD S N    + 
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TS 238

Query: 485 PESL--GQLTALRRLNLNGN 502
            +       ++L  LNL  N
Sbjct: 239 KKQELQHFPSSLAFLNLTQN 258

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           LGL    +       ++   HL+ ++L+ N +   +P  L     ++V+ L  N  + +I
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AI 278

Query: 485 PES-------LGQLTALRRLNLNGNTLS 505
             +         +  +   ++L  N + 
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L LD   +       +  L +L  + LS NSI      SL     L  L L+ N     +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255

Query: 485 PESLGQLTALRRLNLNGNTLS 505
           P  L     ++ + L+ N +S
Sbjct: 256 PGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 395 NGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGN 454
              P VP+  P  G  C F    H  V+      + GL   +P  +        ++L  N
Sbjct: 10  EHFPEVPEIEPM-GPVCPFRCQCHLRVVQ---CSDLGLEK-VPKDLPP--DTALLDLQNN 62

Query: 455 SIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
            I          + +L  L L  N  +   P +   L  L RL L+ N L   +P  +
Sbjct: 63  KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG------AIPSSLGTIASLEVLDLSYN 478
           L L+N  L   +P G++  +++Q + L  N+I          P      AS   + L  N
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 479 FFN-GSIPESL-GQLTALRRLNLNGN 502
                 I  S    +     + L   
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N  +          L++L ++ L  N I    P +   +  LE L LS N     +
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115

Query: 485 PESLGQLTALRRLNLNGNTLS 505
           PE +     L+ L ++ N ++
Sbjct: 116 PEKM--PKTLQELRVHENEIT 134

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNGSIPE-SLGQLTA 493
           LP  +   + LQ + +  N I     S    +  + V++L  N   +  I   +   +  
Sbjct: 115 LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172

Query: 494 LRRLNLNGNTLSGRVPAAL 512
           L  + +    ++  +P  L
Sbjct: 173 LSYIRIADTNIT-TIPQGL 190

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 12/73 (16%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAI--PSSLGTIASLEVLDLSYNFFNGSIPESLGQLT 492
           +   + + L  +  + L  N ++ +     +   +  L  + ++      +IP+ L    
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PP 192

Query: 493 ALRRLNLNGNTLS 505
           +L  L+L+GN ++
Sbjct: 193 SLTELHLDGNKIT 205

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L +    +      G  S  + L S+N+S N +   I   L     ++VLDL  N    S
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIK-S 435

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVP 509
           IP+ + +L AL+ LN+  N L   VP
Sbjct: 436 IPKQVVKLEALQELNVASNQLK-SVP 460

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    +     + I  L  L+ + +S N I+    S       LE LDLS+N     I
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KI 84

Query: 485 PESLGQLTALRRLNLNGNTLS 505
                    L+ L+L+ N   
Sbjct: 85  S--CHPTVNLKHLDLSFNAFD 103

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA---SLEVLDLSYNFFN 481
           L   N  L   +      L  L+++ L  N ++  +           SL+ LD+S N  +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVS 387

Query: 482 GSIPESL-GQLTALRRLNLNGNTLSGRVPAALGGRL 516
               +       +L  LN++ N L+  +   L  R+
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI 423

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
           +P  +S  +    +N+S N I     S + +++ L +L +S+N               L 
Sbjct: 15  VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72

Query: 496 RLNLNGNTLS 505
            L+L+ N L 
Sbjct: 73  YLDLSHNKLV 82

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
             + +     F  + I     ++   N + +  R         I+    LD S N    +
Sbjct: 281 HQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
           + E+ G LT L  L L  N L 
Sbjct: 340 VFENCGHLTELETLILQMNQLK 361

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L LD+  ++      + +   L  + L  N IR     SL  + +L  L L  N  +  +
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 485 PESLGQLTALRRLNLNGNTLS 505
           P  L  L  L+ + L+ N ++
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N  +        S LR LQ + +S N +   IP      +SL  L +  N     +
Sbjct: 83  LVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIR-KV 138

Query: 485 PE-SLGQLTALRRLNLNGNTLS 505
           P+     L  +  + + GN L 
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLE 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           L +    L G +P  +     L  ++L  N I+ AI    L   + L  L L +N     
Sbjct: 177 LRISEAKLTG-IPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-M 231

Query: 484 IPE-SLGQLTALRRLNLNGNTLSGRVPAALGG 514
           I   SL  L  LR L+L+ N LS RVPA L  
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496
            +    L+HL ++ L  N I      +   +  L+ L +S N     IP +L   ++L  
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVE 127

Query: 497 LNLNGNTLS 505
           L ++ N + 
Sbjct: 128 LRIHDNRIR 136

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGS 483
           L + +  +R       S LR++  I + GN +              L  L +S       
Sbjct: 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-G 186

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
           IP+ L     L  L+L+ N + 
Sbjct: 187 IPKDL--PETLNELHLDHNKIQ 206

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLNGNT 503
           HL+ +  S   ++ A+P  +       +LDL  N  +  + +     L  L  L L  N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 504 LS 505
           +S
Sbjct: 90  IS 91

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 4/78 (5%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNGSIPESLGQLTAL 494
           +P  +     L  + +  N IR         + ++  +++  N   N            L
Sbjct: 117 IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174

Query: 495 RRLNLNGNTLSGRVPAAL 512
             L ++   L+  +P  L
Sbjct: 175 NYLRISEAKLT-GIPKDL 191

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN--GSIPESLGQLTALRR 496
            + KL  L+ + LS N I G +      + +L  L+LS N      ++ E L +L  L+ 
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKS 124

Query: 497 LNLNGN 502
           L+L   
Sbjct: 125 LDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 425 LGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L LDN     G +    ++  +L+ ++L    +     S+L  +  L+ L+LS N   G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG 86

Query: 484 IPESLGQLTALRRLNLNGNTLS 505
           +     +L  L  LNL+GN L 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLK 108

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN--GSIPESLGQLTALRR 496
           G   LR L+++ ++ N I          +  L  L L+ N     G + + L  L +L  
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTY 117

Query: 497 LNLNGN 502
           L +  N
Sbjct: 118 LCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 14/82 (17%)

Query: 432 LRGFLPNGISK-------LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           LRG     I         L    +I+ S N IR  +      +  L+ L ++ N     I
Sbjct: 26  LRG---YKIPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRIC-RI 79

Query: 485 PESLGQ-LTALRRLNLNGNTLS 505
            E L Q L  L  L L  N+L 
Sbjct: 80  GEGLDQALPDLTELILTNNSLV 101

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTA 493
           +P G+ + L +L  +++S N I   +      + +L+ L++  N     I   +   L +
Sbjct: 95  IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNS 153

Query: 494 LRRLNLNGNTLS 505
           L +L L    L+
Sbjct: 154 LEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
              +     +P GI      + ++L  N I+        +   LE L+L+ N  +   P 
Sbjct: 18  CHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG 74

Query: 487 SLGQLTALRRLNLNGNTLS 505
           +   L  LR L L  N L 
Sbjct: 75  AFNNLFNLRTLGLRSNRLK 93

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 22/81 (27%), Positives = 35/81 (43%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L + +  L       +  L +L+ +NLS N I     S L  +  L+ + L         
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288

Query: 485 PESLGQLTALRRLNLNGNTLS 505
           P +   L  LR LN++GN L+
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    ++    +  +   HL+ + L+ N +    P +   + +L  L L  N     I
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95

Query: 485 P-ESLGQLTALRRLNLNGNTLS 505
           P      L+ L +L+++ N + 
Sbjct: 96  PLGVFTGLSNLTKLDISENKIV 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L+   L       +S L  L  + L   +I      S   +  L+VL++S+  +  ++
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPA 510
             +      L  L++    L+  VP 
Sbjct: 217 TPNCLYGLNLTSLSITHCNLT-AVPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           L + +      +        +L S++++  ++  A+P  ++  +  L  L+LSYN  + +
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-T 262

Query: 484 IPE-SLGQLTALRRLNLNGNTLS 505
           I    L +L  L+ + L G  L+
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +    +   L      L +L+S+ +  N +      +   + SLE L L       SI
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SI 167

Query: 485 P-ESLGQLTALRRLNLNGNTLSGRVPAALGG----RLLHRASFNFTD 526
           P E+L  L  L  L L    ++     +       ++L  + + + D
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    +     + + +L  LQ I L G  +    P +   +  L VL++S N    ++
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TL 311

Query: 485 PESL-GQLTALRRLNLNGNTLS 505
            ES+   +  L  L L+ N L+
Sbjct: 312 EESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           L + +  L        S L  L+ + L   ++  +IP+ +L  +  L VL L +   N  
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 527
              S  +L  L+ L ++       +        L+  S + T  
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLTSLSITHC 234

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 447 QSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
           +++         A+P  + T     +LDL  N       +       L  L LN N +S
Sbjct: 14  RAVLCHRKRFV-AVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L   N  +      GI KL  L  +  + N+I     S      +L  L    N    ++
Sbjct: 47  LDCHNSSITDM--TGIEKLTGLTKLICTSNNITTLDLSQN---TNLTYLACDSNKLT-NL 100

Query: 485 PESLGQLTALRRLNLNGNTLS 505
              +  LT L  LN + N L+
Sbjct: 101 D--VTPLTKLTYLNCDTNKLT 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
              + Q           +L  L S++   +SI     + +  +  L  L  + N    ++
Sbjct: 26  AAFEMQAT---DTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT-TL 79

Query: 485 PESLGQLTALRRLNLNGNTLS 505
              L Q T L  L  + N L+
Sbjct: 80  D--LSQNTNLTYLACDSNKLT 98

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +S+ + L  +N   N+I   +   L     L  LD S N     I   +  LT L   + 
Sbjct: 187 VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDC 240

Query: 500 NGNTLS 505
           + N L+
Sbjct: 241 SVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +S+  +L  +    N +   +   +  +  L  L+   N     +  S  Q   L  LN 
Sbjct: 81  LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLDVS--QNPLLTYLNC 134

Query: 500 NGNTLS 505
             NTL+
Sbjct: 135 ARNTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 6/79 (7%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
              +G R      ++    L  ++     I   +   L     L  L L+       +  
Sbjct: 280 FQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD- 334

Query: 487 SLGQLTALRRLNLNGNTLS 505
            +   T L+ L+     + 
Sbjct: 335 -VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 5/66 (7%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +S+   L  + L+   +   +   +     L+ L              +G++ AL     
Sbjct: 314 LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFE 368

Query: 500 NGNTLS 505
                 
Sbjct: 369 AEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
           LD    +      ++    L +++ S N I       +     L  L+   N     +  
Sbjct: 153 LDCHLNKKITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD- 207

Query: 487 SLGQLTALRRLNLNGNTLS 505
            L Q   L  L+ + N L+
Sbjct: 208 -LNQNIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +++   L  ++ S N +   I   +  +  L   D S N     +  S   L+ L  L+ 
Sbjct: 208 LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHC 261

Query: 500 NGNTLS 505
               L 
Sbjct: 262 IQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +S    L  ++   N     +   +     L  LD S+N     +   + Q   L RLN 
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNC 198

Query: 500 NGNTLS 505
           + N ++
Sbjct: 199 DTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           ++ L  L  +N   N +     S       L  L+ + N     I   +   T L  L+ 
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLDVSQN---PLLTYLNCARNTLT-EID--VSHNTQLTELDC 155

Query: 500 NGNTLS 505
           + N   
Sbjct: 156 HLNKKI 161

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +S+   L  +N + N++   I   +     L  LD   N         +   T L  L+ 
Sbjct: 123 VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLN--KKITKLDVTPQTQLTTLDC 177

Query: 500 NGNTLS 505
           + N ++
Sbjct: 178 SFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
             S   +   ++     S   +A+L  LD   +     +   + +LT L +L    N ++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNIT 77

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 6/65 (9%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           ++ L  L   + S N +   +  S  T++ L  L          I   L   T L     
Sbjct: 229 VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQA 282

Query: 500 NGNTL 504
            G   
Sbjct: 283 EGCRK 287

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 5/66 (7%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           ++    L      G      +  +  T   L +LD         +   L Q   L  L L
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELDVTHNT--QLYLLDCQAAGIT-ELD--LSQNPKLVYLYL 325

Query: 500 NGNTLS 505
           N   L+
Sbjct: 326 NNTELT 331

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.5 bits (122), Expect = 5e-07
 Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGT---IASLEVLDLSYNFFNGS----IPESLGQLTA 493
            +  +L+ + +     +  +         +  LE +D+S           + + + ++  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 494 LRRLNLNGNTLSGRVPAALGGRL 516
           L+ +N+  N LS  +   L   L
Sbjct: 309 LKFINMKYNYLSDEMKKELQKSL 331

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            +S + +L+ ++L  N I+  I +      +LE L +SYN    S+   + +L  LR L 
Sbjct: 65  SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLY 121

Query: 499 LNGNTLS 505
           ++ N ++
Sbjct: 122 MSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 12/74 (16%)

Query: 438 NGISKL-------RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN--GSIPESL 488
           N I K+         L+ + +S N I  ++ S +  + +L VL +S N     G I + L
Sbjct: 80  NLIKKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEI-DKL 136

Query: 489 GQLTALRRLNLNGN 502
             L  L  L L GN
Sbjct: 137 AALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L      +   +   +S L+  + + LS N+I   I SSL  + +L +L L  N     I
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KI 85

Query: 485 PESLGQLTALRRLNLNGNTLS 505
                    L  L ++ N ++
Sbjct: 86  ENLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 448 SINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
            ++     I   + ++L T+ + + L LS N     I  SL  +  LR L+L  N + 
Sbjct: 29  ELHGMIPPIEK-MDATLSTLKACKHLALSTNNI-EKI-SSLSGMENLRILSLGRNLIK 83

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
           G+  L +L  + L  N I     + L  +  +  L+LS N        ++  L +++ L+
Sbjct: 58  GVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGN--PLKNVSAIAGLQSIKTLD 113

Query: 499 LNGNTLS 505
           L    ++
Sbjct: 114 LTSTQIT 120

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 497
           + I+ L+ +++++L+   I    P  L  +++L+VL L  N    +I   L  LT L+ L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYL 156

Query: 498 NLNGNTLS 505
           ++    +S
Sbjct: 157 SIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  +       ++ L +LQ + L  N I     S L  + +L+ L +     +  +
Sbjct: 112 LDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS-DL 166

Query: 485 PESLGQLTALRRLNLNGNTLS 505
              L  L+ L  L  + N +S
Sbjct: 167 -TPLANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L  L ++    N I     S L ++ +L  + L  N  +  +   L   + L  + 
Sbjct: 168 PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS-DV-SPLANTSNLFIVT 223

Query: 499 LNGNTLS 505
           L   T++
Sbjct: 224 LTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
             + L  + +++  G  +       +  + +L  L+L  N     +   L  LT +  L 
Sbjct: 36  TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELE 91

Query: 499 LNGNTLS 505
           L+GN L 
Sbjct: 92  LSGNPLK 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
               L +   I    +++      +   +  +  L         +I E +  L  L  L 
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLE 69

Query: 499 LNGNTLS 505
           L  N ++
Sbjct: 70  LKDNQIT 76

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 17/127 (13%), Positives = 39/127 (30%), Gaps = 10/127 (7%)

Query: 427 LDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP 485
            +       +     + L  L+ + +  + ++   P SL +I ++  L L        + 
Sbjct: 157 GNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLL 214

Query: 486 E-SLGQLTALRRLNLNGNTLSG----RVPAALGGRLLHRASFNFTDNAG--LCGIPGLRA 538
           E  +   +++  L L    L       +       L+ + +F         L  +  L  
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274

Query: 539 CGPHLST 545
               L  
Sbjct: 275 QISGLLE 281

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 4/112 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           L L N  +     + + +  +LQ++ L+ N I   I   S  ++ SLE LDLSYN+   +
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SN 114

Query: 484 IPESL-GQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534
           +  S    L++L  LNL GN        +L   L         +      I 
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 10/80 (12%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIA--------SLEVLDLSYNFFNGSIPE 486
           L          ++ + L    +     S L T          +   + ++       + +
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 487 SLGQLTALRRLNLNGNTLSG 506
            L Q++ L  L  + N L  
Sbjct: 272 LLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
             +  L   +P+G+++   ++S++LS N I     S L    +L+ L L+ N  N +I E
Sbjct: 38  GSSGSLN-SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEE 93

Query: 487 -SLGQLTALRRLNLNGNTLS 505
            S   L +L  L+L+ N LS
Sbjct: 94  DSFSSLGSLEHLDLSYNYLS 113

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLTALRR 496
           N + K    +++ ++  S+   +   L  I+ L  L+ S N    S+P+    +LT+L++
Sbjct: 248 NSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305

Query: 497 LNLNGN 502
           + L+ N
Sbjct: 306 IWLHTN 311

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           + L    +           R+L  + L  N +     ++   +A LE LDLS N    S+
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 485 P-ESLGQLTALRRLNLNGNTLS 505
              +   L  L  L+L+   L 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L L +  L+  LP+     L +L  + L GN I      +   + SL+ L L  N     
Sbjct: 134 LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-H 191

Query: 484 IPE-SLGQLTALRRLNLNGNTLS 505
           +   +   L  L  L L  N LS
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE- 486
             QGL+  +P GI      Q I L GN I     +S     +L +L L  N     I   
Sbjct: 19  PQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAA 74

Query: 487 SLGQLTALRRLNLNGNTLSGRVPA 510
           +   L  L +L+L+ N     V  
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDP 98

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGS 483
           L L +  L        + L  L+ ++LS N+   ++  +    +  L  L L        
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-E 119

Query: 484 IPE-SLGQLTALRRLNLNGNTLS 505
           +       L AL+ L L  N L 
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQ 142

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500
           + L  L  ++LSGN +    P S   +  L+ L +  +        +   L +L  +NL 
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263

Query: 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC 531
            N L+  +P  L   L H    +   N   C
Sbjct: 264 HNNLT-LLPHDLFTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    ++    N    LRHL+ + LS N IR     +   +A+L  L+L  N    +I
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127

Query: 485 PE-SLGQLTALRRLNLNGNTLS 505
           P  +   L+ L+ L L  N + 
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L    P     L HLQ + +  + I+    ++   + SL  ++L++N     +
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LL 270

Query: 485 PES-LGQLTALRRLNLNGN 502
           P      L  L R++L+ N
Sbjct: 271 PHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  L          L  L+ + L  N I      +   I SL  LDL        I
Sbjct: 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 485 PE-SLGQLTALRRLNLNGNTLSGRVPA 510
            E +   L+ LR LNL    L   +P 
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLR-EIPN 202

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L L N  +        +++  L+ ++L     +      +   +++L  L+L+       
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199

Query: 484 IPESLGQLTALRRLNLNGNTLSGRVPAALGG 514
           IP +L  L  L  L+L+GN LS   P +  G
Sbjct: 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG 229

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500
           + L  L+ + +SGN      P S   ++SL+ L +  +  +     +   L +L  LNL 
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC 531
            N LS  +P  L   L +    +   N   C
Sbjct: 275 HNNLS-SLPHDLFTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
              +GL   +P GI    + + +NL  N+I+     +   +  LEVL L  N        
Sbjct: 61  CTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG 117

Query: 487 SLGQLTALRRLNLNGNTLS 505
           +   L +L  L L  N L+
Sbjct: 118 AFNGLASLNTLELFDNWLT 136

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    ++    +    L HL+ + L  NSIR     +   +ASL  L+L  N+    I
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VI 138

Query: 485 P-ESLGQLTALRRLNLNGNTLS 505
           P  +   L+ LR L L  N + 
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIE 160

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L +         P     L  L+ + +  + +     ++   +ASL  L+L++N  + S+
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SL 281

Query: 485 PES-LGQLTALRRLNLNGN 502
           P      L  L  L+L+ N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 1/82 (1%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L +  L          L  L+ + L  N I      +   + SL  LDL        I
Sbjct: 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 485 PE-SLGQLTALRRLNLNGNTLS 505
            E +   L  L+ LNL    + 
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIK 209

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNG 482
             L    +   L   + S    L+ + L+ N I   I   +   +  L  L+LS NF  G
Sbjct: 280 CDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-G 336

Query: 483 SIPE-SLGQLTALRRLNLNGNTLS 505
           SI       L  L  L+L+ N + 
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNG 482
           L ++ Q     + N     L  L  + L  N     + +     +A+LEVL L+    +G
Sbjct: 59  LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDG 117

Query: 483 SI--PESLGQLTALRRLNLNGNTLSGRVPAAL 512
           ++        LT+L  L L  N +    PA+ 
Sbjct: 118 AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           + L    +        S+L+ LQ + +   +    I + +   ++SL +L L YN F   
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQ 93

Query: 484 IPES-LGQLTALRRLNLNGNTLSGRV 508
           +       L  L  L L    L G V
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAV 119

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLNGNT 503
           H+  ++LS NSI     +S   +  L+ L +        I   +   L++L  L L+ N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 504 LS 505
             
Sbjct: 91  FL 92

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTA 493
           + +     L HL  +NLS N +          +  LEVLDLSYN    ++ + S   L  
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPN 372

Query: 494 LRRLNLNGNTLS 505
           L+ L L+ N L 
Sbjct: 373 LKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLNGNT 503
            +++ +LS + I   + S       LE L L+ N  N  I + +   LT L +LNL+ N 
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNF 334

Query: 504 LS 505
           L 
Sbjct: 335 LG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 425 LGLDNQGLRG-FLPNGI-SKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFN 481
           L L    L G  L       L  L+ + L  N+I+   P+S    +    VLDL++N   
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

Query: 482 GSIPESLGQLTA--LRRLNLNGNTLS 505
               E L          L L+  TL 
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQ 193

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGSIPES-LGQLT 492
           + + +   L  L+ ++LS N IR A+   S   + +L+ L L  N    S+P+    +LT
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLT 395

Query: 493 ALRRLNLNGN 502
           +L+++ L+ N
Sbjct: 396 SLQKIWLHTN 405

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 438 NGISKLRHLQSINLSGNSIR-----GAIPSSLGTIASLEVLDLSYNFFNG----SIPESL 488
                 R L ++ +  N IR       +   L     L+VLDL  N F      ++  +L
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240

Query: 489 GQLTALRRLNLNGNTLS 505
                LR L LN   LS
Sbjct: 241 KSWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 439 GISKLRHLQSINLSGNSI--RGA--IPSSLGTIASLEVLDLSYNFFN----------GSI 484
            + +   ++ I LSGN+I    A  +  ++ +   LE+ + S  F              +
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALG 513
            ++L +   L  + L+ N         L 
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 436 LPNGISKLRHLQSINLSGNSIRG----AIPSSLGTIA--SLEVLDLSYNFFNG----SIP 485
           L   +    +L+ + L+   +      A+  +   +    L+ L L YN        ++ 
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295

Query: 486 ESLGQ-LTALRRLNLNGNTLS 505
             + + +  L  L LNGN  S
Sbjct: 296 TVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 10/90 (11%)

Query: 426 GLDNQGLRGFLPNGISKLRHLQSINLSGNSI--RGA--IPSSLGTIASLEVLDLSYNFFN 481
           G+  +G+   L  G++  + L+ ++L  N+    G+  +  +L +  +L  L L+    +
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 482 G----SIPESLGQL--TALRRLNLNGNTLS 505
                ++ ++  +L    L+ L L  N + 
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 19/113 (16%)

Query: 439 GISKLRHLQSINLSGNSIR----------GAIPSSLGTIASLEVLDLSYNFF--NG--SI 484
            I+  + L+    S                 +  +L     L  + LS N F       +
Sbjct: 55  NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 485 PESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR 537
            + L + T L  L L+ N L         G  + RA      N      P LR
Sbjct: 115 IDFLSKHTPLEHLYLHNNGLG-----PQAGAKIARALQELAVNKKAKNAPPLR 162

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 9/71 (12%)

Query: 444 RHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFN-----GSIPESLGQLTAL 494
             L+SI    N +          +  +   L  + +  N          + E L     L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 495 RRLNLNGNTLS 505
           + L+L  NT +
Sbjct: 219 KVLDLQDNTFT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.9 bits (116), Expect = 4e-06
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRR 496
           GI  L ++  + L+GN +       L  + +L  L L  N     I    SL  L  L+ 
Sbjct: 60  GIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKS 113

Query: 497 LNLNGNTLS 505
           L+L  N +S
Sbjct: 114 LSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L++L  + L  N I+  + SSL  +  L+ L L +N  +  I   L  L  L  L 
Sbjct: 82  PLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLY 137

Query: 499 LNGNTLS 505
           L  N ++
Sbjct: 138 LGNNKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 9e-06
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
                      NL   S+  A+      + S++ +  + +    S+ + +  L  + +L 
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLF 71

Query: 499 LNGNTLS 505
           LNGN L+
Sbjct: 72  LNGNKLT 78

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 9e-06
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 497
           NG+  L  L+S+ L  N I     + L  +  L+ L L  N  +  I   L  LT L+ L
Sbjct: 125 NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNL 180

Query: 498 NLNGNTLS 505
            L+ N +S
Sbjct: 181 YLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N  +       +S+L  L +++L  N I       L  +  L+ L LS N  + S 
Sbjct: 136 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKN--HISD 189

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +L  L  L  L L      
Sbjct: 190 LRALAGLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             L  + +   +    ++L  +  I  + + I+ ++   +  + ++  L L+ N     I
Sbjct: 26  DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DI 80

Query: 485 PESLGQLTALRRLNLNGNTLS 505
            + L  L  L  L L+ N + 
Sbjct: 81  -KPLTNLKNLGWLFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L  LQ++ LS N I  +   +L  + +L+VL+L               L     + 
Sbjct: 170 PLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 499 LNGNTL 504
               +L
Sbjct: 228 NTDGSL 233

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 437 PNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
            + +    +L  + +        +    L  +  L  L +  +      P++      L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 496 RLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLC 531
           RLNL+ N L       + G  L     +   N   C
Sbjct: 84  RLNLSFNALESLSWKTVQGLSLQELVLS--GNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 425 LGLD-NQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L ++  Q L+      +  L  L+++ +  + +R   P +      L  L+LS+N    S
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94

Query: 484 IPESLGQLTALRRLNLNGNTL 504
           +     Q  +L+ L L+GN L
Sbjct: 95  LSWKTVQGLSLQELVLSGNPL 115

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L++L  + L  N ++  + SSL  +  L+ L L +N  +  I   L  L  L  L 
Sbjct: 85  PLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLY 140

Query: 499 LNGNTLS 505
           L  N ++
Sbjct: 141 LGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N  +       +S+L  L +++L  N I   I   L  +  L+ L LS N  + S 
Sbjct: 139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKN--HISD 192

Query: 485 PESLGQLTALRRLNLNGNTLS 505
             +L  L  L  L L      
Sbjct: 193 LRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRR 496
           GI  L ++  + L+GN +   I   L  + +L  L L  N     +    SL  L  L+ 
Sbjct: 63  GIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKS 116

Query: 497 LNLNGNTLS 505
           L+L  N +S
Sbjct: 117 LSLEHNGIS 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 497
           NG+  L  L+S+ L  N I     + L  +  L+ L L  N  +  I   L  LT L+ L
Sbjct: 128 NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNL 183

Query: 498 NLNGNTLS 505
            L+ N +S
Sbjct: 184 YLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
                      NL   S+      +   + S++ +  + +    S+ + +  L  + +L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLF 74

Query: 499 LNGNTLS 505
           LNGN L+
Sbjct: 75  LNGNKLT 81

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
             ++L  +  I  + + I+      +  + ++  L L+ N     I + L  L  L  L 
Sbjct: 41  TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLF 96

Query: 499 LNGNTLS 505
           L+ N + 
Sbjct: 97  LDENKVK 103

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            ++ L  LQ++ LS N I      +L  + +L+VL+L               L     + 
Sbjct: 173 PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 499 LNGNTL 504
               +L
Sbjct: 231 NTDGSL 236

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L    L  F    +     L  +NL    +   +    GT+  L  LDLS+N    S+
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SL 92

Query: 485 PESLGQLTALRRLNLNGNTLS 505
           P     L AL  L+++ N L+
Sbjct: 93  PLLGQTLPALTVLDVSFNRLT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRLNL 499
             L  L +++LS N ++ ++P    T+ +L VLD+S+N    S+P      L  L+ L L
Sbjct: 74  GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131

Query: 500 NGNTLS 505
            GN L 
Sbjct: 132 KGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNG 482
           L +    L   LP G    L  LQ + L GN ++  +P  L      LE L L+ N    
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT- 161

Query: 483 SIPESL-GQLTALRRLNLNGNTLSGRVPA 510
            +P  L   L  L  L L  N+L   +P 
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY-TIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGT-IASLEVLDLSYNFFNGS 483
           L L +  L+  LP     L  L  +++S N +  ++P      +  L+ L L  N    +
Sbjct: 82  LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-T 138

Query: 484 IPESL-GQLTALRRLNLNGNTLSGRVPAAL 512
           +P  L      L +L+L  N L+  +PA L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            +  L  L+ ++++ N ++          A L  L L  N       +SL  L  L  L+
Sbjct: 80  PLKDLTKLEELSVNRNRLKNLNGIPS---ACLSRLFLDNN--ELRDTDSLIHLKNLEILS 134

Query: 499 LNGNTLS 505
           +  N L 
Sbjct: 135 IRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
               L +    NL   S+      S   ++ ++  +   +    S+   +   T L+ L+
Sbjct: 14  PDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELH 69

Query: 499 LNGNTLS 505
           L+ N +S
Sbjct: 70  LSHNQIS 76

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
              +L  +Q+ N   ++I+    + +    +L+ L LS+N    S    L  LT L  L+
Sbjct: 36  SQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHN--QISDLSPLKDLTKLEELS 91

Query: 499 LNGNTLS 505
           +N N L 
Sbjct: 92  VNRNRLK 98

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 438 NGISKLR-----HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT 492
           N +  L       L  + L  N +R     SL  + +LE+L +  N    SI   LG L+
Sbjct: 95  NRLKNLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SI-VMLGFLS 150

Query: 493 ALRRLNLNGNTLS 505
            L  L+L+GN ++
Sbjct: 151 KLEVLDLHGNEIT 163

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 8e-06
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGSIPE----SLG 489
           L   + S L+ L+ + L  N I   +   +   +A L+ L LS N  +   P        
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGN 160

Query: 490 QLTALRRLNLNGNTLSGRVPAALGG-RLLHRASFNFTDNAGLC 531
           +L  L  L+L+ N L       L       +      +N   C
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 441 SKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLN 498
           ++L +L S+ LS N +   I S +   + +L  LDLS N  + ++       L AL  L 
Sbjct: 61  TRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL 118

Query: 499 LNGNTLS 505
           L  N + 
Sbjct: 119 LYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNG 482
           L L +  L  F+ +     + +L+ ++LS N +   +       + +LEVL L  N    
Sbjct: 69  LLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV- 125

Query: 483 SIPE-SLGQLTALRRLNLNGNTLSGRVPA 510
            +   +   +  L++L L+ N +S R P 
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 9/85 (10%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIP----SSLGTIASLEVLDLSYNF 479
           L L N  +   +       +  LQ + LS N I    P         +  L +LDLS N 
Sbjct: 117 LLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 480 FNGSIPESLGQLTALRR--LNLNGN 502
                   L +L A  +  L L+ N
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHNN 199

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 427 LDNQGLRGFLPNGI-----SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
           LD       L +       +    +  +NLS N + G++   L     ++VLDL  N   
Sbjct: 408 LDVS--LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM 463

Query: 482 GSIPESLGQLTALRRLNLNGNTL 504
            SIP+ +  L AL+ LN+  N L
Sbjct: 464 -SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES--LGQLT 492
           L   +    + L+ +++S N ++  I      +ASL  LDLS+N F+  +P     G LT
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLT 146

Query: 493 ALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 527
            L  L L+           +    L     +    
Sbjct: 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN--- 481
           L          +  G S L+ LQ++ L  N ++           ++  L+      N   
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLN 416

Query: 482 -GSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516
             +   +     ++  LNL+ N L+G V   L  ++
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV 452

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 16/81 (19%), Positives = 26/81 (32%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
             + NQ          S    +    LS +           + +S   L+ + N F  S+
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369

Query: 485 PESLGQLTALRRLNLNGNTLS 505
            +    L  L+ L L  N L 
Sbjct: 370 FQGCSTLKRLQTLILQRNGLK 390

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 428 DNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIP--SSLGTIASLEVLDLSYNFFNGSI 484
           + + L  ++      +L  L+ + +    ++   P  + + +     +L+++ N +  SI
Sbjct: 89  NTRNLT-YIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 485 PESL--GQLTALRRLNLNGNTLSGRVPA-ALGGRLLHRASFNFTDNAGLCGIP 534
           P +   G       L L  N  +  V   A         +     N  L  I 
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAF--NGTKLDAVYLNKNKYLTVID 196

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 10/116 (8%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP----SSLGTIASLEVLDLSYNFF 480
           L L    LR    +  S L ++  I +S +     +      +L   + +  +++     
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL---SKVTHIEIRNTRN 92

Query: 481 NGSIP-ESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHR-ASFNFTDNAGLCGIP 534
              I  ++L +L  L+ L +    L    P                TDN  +  IP
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGT-IASLEVLDLSYNFFNG 482
           L L++  L+  LP GI  +L++L+++ ++ N ++ A+P  +   + +L  L L  N    
Sbjct: 66  LYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK- 122

Query: 483 SIPESL-GQLTALRRLNLNGNTLS 505
           S+P  +   LT L  L+L  N L 
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQ 146

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGS 483
           L L +  L         +L  L+ + L+ N ++  +P+ +   + +LE L ++ N    +
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-A 99

Query: 484 IPESL-GQLTALRRLNLNGNTLS 505
           +P  +  QL  L  L L+ N L 
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK 122

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS 483
           L L+N         GI  KL  L+ IN S N I      +    + +  + L+ N    +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 484 IPESL-GQLTALRRLNLNGNTLS 505
           +   +   L +L+ L L  N ++
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNG 482
           +   N  +   +  G       +  I L+ N +   +   +   + SL+ L L  N    
Sbjct: 62  INFSNNKITD-IEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT- 118

Query: 483 SIPE-SLGQLTALRRLNLNGNTLSGRVP 509
            +   S   L+++R L+L  N ++  V 
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 11/73 (15%)

Query: 444 RHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNG-------SIPESLGQLT 492
            H+ S+NL  N + G     +     ++  L+ + L Y+           ++  +   + 
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284

Query: 493 ALRRLNLNGNTLS 505
            +  ++ NG  + 
Sbjct: 285 KIILVDKNGKEIH 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 445 HLQSINLSGNSIR----GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL-----TALR 495
            +Q ++L    +     G + S+L T+ +L+ L LS N    +  + L +        L 
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 496 RLNLNGNTLSGRVPAALGGRLLH 518
           +L L   +LS      L   L  
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRA 168

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 438 NGISKLRHLQSINLSGNSIR--GAIPSSLGTIA---SLEVLDLSYNFFN----GSIPESL 488
           + +++ R L  + +S N +   G      G       L VL L+    +     S+  +L
Sbjct: 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394

Query: 489 GQLTALRRLNLNGNTLS 505
               +LR L+L+ N L 
Sbjct: 395 LANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 13/88 (14%)

Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIR----GAIPSSLGTIASLEVLDLSYNFFNG 482
           L +      LP     L+  Q + L    +       I S+L    +L  L+L  N    
Sbjct: 15  LSDARWAELLPL----LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70

Query: 483 SIPESLGQL-----TALRRLNLNGNTLS 505
                + Q        +++L+L    L+
Sbjct: 71  VGVHCVLQGLQTPSCKIQKLSLQNCCLT 98

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNG 482
           + L N  +   L       LR L S+ L GN I   +P SL   + SL++L L+ N  N 
Sbjct: 61  IDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN- 117

Query: 483 SIPESLGQ-LTALRRLNLNGNTLS 505
            +     Q L  L  L+L  N L 
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGS 483
           + L+   ++   P   S  + L+ I+LS N I   +   +   + SL  L L  N     
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 484 IPESL-GQLTALRRLNLNGNTLSGRVPA 510
           +P+SL   L +L+ L LN N ++  +  
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLRV 121

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 436 LPNGI-SKLRHLQSINLSGN---SIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQ 490
           + +G    L HL ++ L+GN   S+     S L   +SL+ L         S+     G 
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL---SSLQKLVAVETNLA-SLENFPIGH 122

Query: 491 LTALRRLNLNGNTLS 505
           L  L+ LN+  N + 
Sbjct: 123 LKTLKELNVAHNLIQ 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGSIPES--LGQL 491
           L  G  S L  LQ +     ++  ++ +   G + +L+ L++++N    S         L
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNL 148

Query: 492 TALRRLNLNGNTLS 505
           T L  L+L+ N + 
Sbjct: 149 TNLEHLDLSSNKIQ 162

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTAL 494
           +P  +S  +HL  I+LS N I      S   +  L  L LSYN     IP      L +L
Sbjct: 46  VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSL 104

Query: 495 RRLNLNGNTLSGRVP 509
           R L+L+GN +S  VP
Sbjct: 105 RLLSLHGNDIS-VVP 118

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 7/114 (6%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNG- 482
           L      LR       S    L+ I +S N +   I +     +  L  + +     N  
Sbjct: 35  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA--NNL 92

Query: 483 -SIPES-LGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534
             I       L  L+ L ++   +   +P       L +   +  DN  +  I 
Sbjct: 93  LYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	624
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.93
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.83
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.49
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.46
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.45
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.44
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.37
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.36
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.35
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.33
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.33
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.28
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.27
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.25
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.25
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.23
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.22
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.21
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.2
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.2
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.2
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.2
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.16
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.15
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.1
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.1
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.1
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.03
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.03
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.03
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.03
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.02
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.02
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.01
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.01
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.01
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.01
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.01
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.0
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.99
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.99
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.99
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.98
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.97
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.73
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.71
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.7
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.65
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.65
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.65
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.65
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.6
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.57
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.57
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.55
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.53
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.53
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.51
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.5
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.45
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.25
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.95
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.92
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.7
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.68
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.38
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.32
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.23
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.22
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.34
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.24
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.41
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.45
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.56
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	91.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.88
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.86
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	87.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	86.63
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	86.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	85.93
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	83.97
2vzp_A	127	Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS	81.53
2w3j_A	145	Carbohydrate binding module; sugar-binding protein	80.65
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	80.39

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.93  E-value=5.8e-27  Score=221.54  Aligned_cols=154  Identities=19%  Similarity=0.214  Sum_probs=115.0

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCccccccccceeccCCCCCCChHHHHHHhhhcCCCCCccEE
Q 006940          193 RTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQY  272 (624)
Q Consensus       193 ~~~~Rin~Gg~~~~~~~~~~~D~~~~dR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~Tar~~~~~~~~lt~  272 (624)
                      +++|||||||+..   .    |..  +|.|.+|..+...+... .....+..  .....+|..||||||.+..   +++|
T Consensus         5 ~~~~~INcGg~~~---~----d~~--gr~w~~D~~~~~~g~~~-~~~~~~~~--~~~~~~~~~lY~TaR~~~~---~~tY   69 (174)
T 2jwp_A            5 KVIWAVNAGGESH---V----DVH--GIHYRKDPLEGRVGRAS-DYGMKLPI--LRSNPEDQVLYQTERYNED---SFGY   69 (174)
T ss_dssp             HEEEEEEETSSSE---E----ETT--TEEECSSCSSTTCCCCC-CCCTTSCC--SSSCHHHHHTTTCCCCCCS---CEEE
T ss_pred             cEEEEEECCCCCc---c----CCC--CCEEcCCcCcccCCccc-ccccceEe--cccCCCCchhhhhhccCCC---CeEE
Confidence            5799999999753   1    222  89999986542111110 00111111  1123358899999999765   4999


Q ss_pred             EeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEECCeecccCCceeeecCCceeeEEEEEEEe-------------eeC
Q 006940          273 TMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVA-------------VNG  339 (624)
Q Consensus       273 ~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~~~-------------~~~  339 (624)
                      .|+++++|.|+|||||||+..  .+.++|+|||+|||++++++|||.+++|+ .+++++++.+.             +.+
T Consensus        70 ~f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~-~~~~~~~~~~~v~~~~l~i~~~~~~~~  146 (174)
T 2jwp_A           70 DIPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGH-STAHDEIIPISIKKGKLSVQGEVSTFT  146 (174)
T ss_dssp             EEECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSS-SSCEEEEEEEEEETTEEEETTEEEECC
T ss_pred             EEEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCC-CeeEEEEEEEEEecCceeeeeeecccC
Confidence            999999999999999999975  45899999999999999999999998876 45667766654             356


Q ss_pred             eeEEEEeCCCCCchHHHHHHhhhhh
Q 006940          340 RTLTVTLHPKGGSHAIINAIEVFEI  364 (624)
Q Consensus       340 ~~l~i~~~~~~~~~p~lnaiEi~~~  364 (624)
                      ++|+|+|.|.....|+||||||++.
T Consensus       147 g~L~I~f~p~~~~~a~inaIEI~~~  171 (174)
T 2jwp_A          147 GKLSVEFVKGYYDNPKVCALFIMKG  171 (174)
T ss_dssp             SEEEEEEECSSSCSSSEEEEEEESS
T ss_pred             CeEEEEEeccCCCCcEEEEEEEEeC
Confidence            7899999987666799999999874

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.83  E-value=3.2e-20  Score=175.25  Aligned_cols=140  Identities=17%  Similarity=0.160  Sum_probs=104.9

Q ss_pred             cEEEccCCCCCCCCCCCCceeeccCCcc-CCccccc------CCCC-CCCCCcceeeeecCCCCCCceEEeecCCCceeE
Q 006940           27 AMRISCGARQNIHSPPTNTLWFKDFAYT-GGIPANA------TRPS-FITPPLKTLRYFPLSEGPENCYIINRVPKGHYN   98 (624)
Q Consensus        27 ~~~I~CG~~~~~~~~~~~~~w~~D~~~~-~g~~~~~------~~~~-~~~~~y~t~R~F~~~~~~~~~Y~~~~~~~g~y~   98 (624)
                      .++||||++..  +|..||+|.+|..|. .|.....      .... .++.+|+|+|+|+.    ..+|.||+.++|+|+
T Consensus         7 ~~~INcGg~~~--~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~~G~Y~   80 (174)
T 2jwp_A            7 IWAVNAGGESH--VDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED----SFGYDIPIKEEGEYV   80 (174)
T ss_dssp             EEEEEETSSSE--EETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS----CEEEEEECCSCEEEE
T ss_pred             EEEEECCCCCc--cCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC----CeEEEEEeCCCeEEE
Confidence            58899998764  356799999998764 2321110      1000 12358999999985    589999998889999


Q ss_pred             EEEEEecccCCCCCCCCcEEEEEcCeEEEEeecCCCCc-----ccceeEEEEEEe-------------eCCeEEEEEeeC
Q 006940           99 VRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDH-----DDRAFAEALVFL-------------RDGTVSICFHST  160 (624)
Q Consensus        99 vRl~F~~~~y~~~~~~~~Fdv~~~~~~~~~v~~~~~~~-----~~~~~~E~~~~~-------------~~~~l~i~f~~~  160 (624)
                      |||||++..+.. ...+.|||+++|   .+++.+|+..     ..++.||+.+.+             .+++|.|+|.|.
T Consensus        81 VrLhF~ei~~~~-~~~rvFdV~ing---~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~  156 (174)
T 2jwp_A           81 LVLKFAEVYFAQ-SQQKVFDVRVNG---HTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKG  156 (174)
T ss_dssp             EEEEEECCSCCC-SSSSCEEEEETT---EEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECS
T ss_pred             EEEEEeccccCC-CCCeEeEEEECC---EEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEecc
Confidence            999999987764 467899999999   6677666642     246788888764             567899999986


Q ss_pred             CCCCCcEeeEEEEEcC
Q 006940          161 GHGDPAILSLEILQVD  176 (624)
Q Consensus       161 ~~~~pfIsaIEl~~l~  176 (624)
                      ....||||||||++.+
T Consensus       157 ~~~~a~inaIEI~~~~  172 (174)
T 2jwp_A          157 YYDNPKVCALFIMKGT  172 (174)
T ss_dssp             SSCSSSEEEEEEESSC
T ss_pred             CCCCcEEEEEEEEeCc
Confidence            5678999999999653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.73  E-value=6.2e-18  Score=175.10  Aligned_cols=155  Identities=26%  Similarity=0.493  Sum_probs=131.7

Q ss_pred             cCChHHHHHHHHhhhccCCCC-CCCCCC--CCCCCCCCCCCCcccccCCCCceeEEEEEEcCCCCCcc--CCCccccccc
Q 006940          370 KTLPEEVRALQVLKNSLDLPH-RFGWNG--DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRG--FLPNGISKLR  444 (624)
Q Consensus       370 ~~~~~~~~aL~~~k~~~~~~~-~~~W~~--~~c~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g--~~p~~~~~L~  444 (624)
                      .+.++|..||++||.++.++. ..+|..  ++|.   +.|.||.|+...  ...+|+.|+|++|++.|  .+|..|.+|+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~---~~w~gv~C~~~~--~~~~l~~L~L~~~~l~~~~~~~~~l~~l~   76 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANLP   76 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc---CCCcceEeCCCC--CCceEEEEECCCCCccCCcccChhHhCCC
Confidence            367789999999999997664 247853  5563   359999997432  12369999999999999  8999999999


Q ss_pred             ccccccCcC-ccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEe
Q 006940          445 HLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFN  523 (624)
Q Consensus       445 ~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~  523 (624)
                      +|+.|+|++ |++.+.+|..|+++++|++|+|++|.+++.+|..+.++++|++|+|++|.+++.+|..+.. +.+|+.|+
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~  155 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGIT  155 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEE
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc-CCCCCeEE
Confidence            999999995 9999999999999999999999999999999999999999999999999999999988876 78899999


Q ss_pred             ccCCCCC
Q 006940          524 FTDNAGL  530 (624)
Q Consensus       524 l~~N~~l  530 (624)
                      +++|...
T Consensus       156 L~~N~l~  162 (313)
T 1ogq_A          156 FDGNRIS  162 (313)
T ss_dssp             CCSSCCE
T ss_pred             CcCCccc
Confidence            9988743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=8.9e-17  Score=187.28  Aligned_cols=148  Identities=21%  Similarity=0.328  Sum_probs=125.3

Q ss_pred             ChHHHHHHHHhhhccCCCCCCCCCCCC----CCCCCCCC------------CCcccccCCCCceeEEEEEEcCCCCCccC
Q 006940          372 LPEEVRALQVLKNSLDLPHRFGWNGDP----CVPQQHPW------------SGADCQFDRTSHKWVIDGLGLDNQGLRGF  435 (624)
Q Consensus       372 ~~~~~~aL~~~k~~~~~~~~~~W~~~~----c~~~~~~w------------~gv~C~~~~~~~~~~l~~L~L~~n~l~g~  435 (624)
                      ..+|..||++||.++.++   +|+...    +.|..|.|            .||+|+..     ++|+.|+|++|+|.|.
T Consensus       267 ~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls~~~L~G~  338 (876)
T 4ecn_A          267 YIKDYKALKAIWEALDGK---NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLAGFGAKGR  338 (876)
T ss_dssp             HHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-----SCEEEEECTTTCCEEE
T ss_pred             chHHHHHHHHHHHHcCCC---CCCcCCCcccccCCccccccccccccccCcCceEecCC-----CCEEEEECccCCCCCc
Confidence            346899999999999876   675322    22223579            99999742     3699999999999999


Q ss_pred             CCcccccccccccccC-cCcccccc-------------------------------------------------------
Q 006940          436 LPNGISKLRHLQSINL-SGNSIRGA-------------------------------------------------------  459 (624)
Q Consensus       436 ~p~~~~~L~~L~~L~L-s~N~l~g~-------------------------------------------------------  459 (624)
                      +|+.|++|++|+.|+| ++|.++|.                                                       
T Consensus       339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~  418 (876)
T 4ecn_A          339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK  418 (876)
T ss_dssp             ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred             CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence            9999999999999999 88776655                                                       


Q ss_pred             ---------------------CCCCcCCCccCCeEeccCCCCCC-----------------CCccccC--CCCCCCEEec
Q 006940          460 ---------------------IPSSLGTIASLEVLDLSYNFFNG-----------------SIPESLG--QLTALRRLNL  499 (624)
Q Consensus       460 ---------------------ip~~l~~l~~L~~LdLs~N~l~g-----------------~iP~~l~--~l~~L~~L~L  499 (624)
                                           ||..|++|++|+.|+|++|+|+|                 .+|+.++  ++++|+.|+|
T Consensus       419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L  498 (876)
T 4ecn_A          419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL  498 (876)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred             cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence                                 78889999999999999999998                 4999988  9999999999


Q ss_pred             cCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          500 NGNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      ++|++.|.+|..+.. +.+|+.|++++|.
T Consensus       499 s~N~l~~~iP~~l~~-L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          499 YNCPNMTQLPDFLYD-LPELQSLNIACNR  526 (876)
T ss_dssp             ESCTTCCSCCGGGGG-CSSCCEEECTTCT
T ss_pred             cCCCCCccChHHHhC-CCCCCEEECcCCC
Confidence            999999999988876 7888999998887

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.64  E-value=2.3e-16  Score=179.25  Aligned_cols=145  Identities=20%  Similarity=0.303  Sum_probs=115.2

Q ss_pred             hHHHHHHHHhhhccCCCCCC----------CCCCC-CCCCCCCCC---CCcccccCCCCceeEEEEEEcCCCCCccCCCc
Q 006940          373 PEEVRALQVLKNSLDLPHRF----------GWNGD-PCVPQQHPW---SGADCQFDRTSHKWVIDGLGLDNQGLRGFLPN  438 (624)
Q Consensus       373 ~~~~~aL~~~k~~~~~~~~~----------~W~~~-~c~~~~~~w---~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p~  438 (624)
                      ..|..||.+++.+++.+.|.          +|+.+ +|    |.|   .||+|+..     ++|+.|+|++++++|.+|+
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~----c~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g~lp~   99 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVSLNSN-----GRVTGLSLEGFGASGRVPD   99 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG----GGTTCCTTEEECTT-----CCEEEEECTTSCCEEEECG
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc----ccccCCCCeEEcCC-----CCEEEEEecCcccCCcCCh
Confidence            35889999999887655432          67532 22    369   99999743     3699999999999999999


Q ss_pred             ccccccccccccCcCc----------------------------------------------------------------
Q 006940          439 GISKLRHLQSINLSGN----------------------------------------------------------------  454 (624)
Q Consensus       439 ~~~~L~~L~~L~Ls~N----------------------------------------------------------------  454 (624)
                      +|++|++|+.|+|++|                                                                
T Consensus       100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  179 (636)
T 4eco_A          100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS  179 (636)
T ss_dssp             GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred             HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence            9999999999999888                                                                


Q ss_pred             --------------cccccCCCCcCCCccCCeEeccCCCCCCC-----------------CccccC--CCCCCCEEeccC
Q 006940          455 --------------SIRGAIPSSLGTIASLEVLDLSYNFFNGS-----------------IPESLG--QLTALRRLNLNG  501 (624)
Q Consensus       455 --------------~l~g~ip~~l~~l~~L~~LdLs~N~l~g~-----------------iP~~l~--~l~~L~~L~Ls~  501 (624)
                                    +++| ||..+++|++|++|+|++|.|+|.                 +|+.++  ++++|++|+|++
T Consensus       180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~  258 (636)
T 4eco_A          180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN  258 (636)
T ss_dssp             CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred             ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence                          4445 777888888888888888888875                 888888  888888888888


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++.|.+|..+.. +.+|+.|++++|.
T Consensus       259 n~l~~~~p~~l~~-l~~L~~L~Ls~n~  284 (636)
T 4eco_A          259 CPNLTKLPTFLKA-LPEMQLINVACNR  284 (636)
T ss_dssp             CTTCSSCCTTTTT-CSSCCEEECTTCT
T ss_pred             CcCCccChHHHhc-CCCCCEEECcCCC
Confidence            8888888877765 6677777777776

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=5.7e-15  Score=141.57  Aligned_cols=129  Identities=22%  Similarity=0.262  Sum_probs=112.2

Q ss_pred             CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCc-ccccccccccccCcCccccccCCCCcCCCccCCeEeccC
Q 006940          404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPN-GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY  477 (624)
Q Consensus       404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~-~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~  477 (624)
                      |.|..+.|......     ....++.|+|++|.|++..+. .|..+++|+.|+|++|++++..|..|..+++|+.|+|++
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            46788888643221     112588999999999987775 489999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       478 N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      |+|++..|..+.++++|+.|+|++|++++.+|..+.. +.+|+.|++++|++.|.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH-LNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECTTCCBCCSG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc-CCCCCEEEeCCCCccCcC
Confidence            9999988888999999999999999999988887765 788999999999998864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.51  E-value=5.5e-15  Score=171.52  Aligned_cols=118  Identities=35%  Similarity=0.629  Sum_probs=107.5

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|+++|.+|..|++|++|+.|+|++|+++|.+|..+++|++|+.|||++|+++|.+|..++.+++|+.|+|+
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCCCCCCCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP  541 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~~~~~c~~  541 (624)
                      +|+++|.||...  .+..+....+.+|+.+||.|.. .|..
T Consensus       713 ~N~l~g~iP~~~--~~~~~~~~~~~gN~~Lcg~~l~-~C~~  750 (768)
T 3rgz_A          713 NNNLSGPIPEMG--QFETFPPAKFLNNPGLCGYPLP-RCDP  750 (768)
T ss_dssp             SSEEEEECCSSS--SGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred             CCcccccCCCch--hhccCCHHHhcCCchhcCCCCc-CCCC
Confidence            999999999752  2344556678899999998754 8864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=3.2e-14  Score=136.56  Aligned_cols=128  Identities=27%  Similarity=0.333  Sum_probs=108.6

Q ss_pred             CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC
Q 006940          404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (624)
Q Consensus       404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N  478 (624)
                      |.|..+.|......     ....++.|+|++|.|+ .+|..|.++++|+.|+|++|++++..+..|..|++|+.|+|++|
T Consensus        10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45677777643211     1135889999999998 78899999999999999999999888889999999999999999


Q ss_pred             CCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      ++++..|..+..+++|+.|+|++|+++ .+|......+.+|+.|++++|++.|.+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeecCC
Confidence            999888889999999999999999999 556544444788999999999999864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=4.2e-14  Score=133.36  Aligned_cols=129  Identities=22%  Similarity=0.257  Sum_probs=108.7

Q ss_pred             CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC
Q 006940          404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (624)
Q Consensus       404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N  478 (624)
                      |.|.++.|......     ....++.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|
T Consensus         7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            57889998753321     1135889999999999877778899999999999999999777777899999999999999


Q ss_pred             CCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      .+++..+..+..+++|+.|+|++|+++ .+|......+.+|+.|++++|++.|.+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccC
Confidence            999777777899999999999999999 556655444788999999999988754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.49  E-value=1.7e-14  Score=167.44  Aligned_cols=148  Identities=25%  Similarity=0.367  Sum_probs=118.4

Q ss_pred             CChHHHHHHHHhhhccCCCC-CCCCC-C-CCCCCCCCCCCCcccccCCCCceeEEEEEEcCCCCCccC---CC-------
Q 006940          371 TLPEEVRALQVLKNSLDLPH-RFGWN-G-DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGF---LP-------  437 (624)
Q Consensus       371 ~~~~~~~aL~~~k~~~~~~~-~~~W~-~-~~c~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~---~p-------  437 (624)
                      ...+|..||++||+++.++. ..+|+ + ++|     .|.||+|+ .     ++|+.|+|+++++.|.   +|       
T Consensus         9 ~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C-----~w~gv~C~-~-----~~v~~L~L~~~~l~g~~~~l~~~l~~L~   77 (768)
T 3rgz_A            9 SLYREIHQLISFKDVLPDKNLLPDWSSNKNPC-----TFDGVTCR-D-----DKVTSIDLSSKPLNVGFSAVSSSLLSLT   77 (768)
T ss_dssp             CHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGG-----GSTTEEEE-T-----TEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred             CCHHHHHHHHHHHhhCCCcccccCCCCCCCCc-----CCcceEEC-C-----CcEEEEECCCCCcCCccCccChhHhccC
Confidence            35678999999999988764 34895 3 344     69999997 1     3699999999999887   44       


Q ss_pred             ----------------cccccccccccccCcCccccccCCC--CcCCCccCCeEeccCCCCCCCCcccc-CCCCCCCEEe
Q 006940          438 ----------------NGISKLRHLQSINLSGNSIRGAIPS--SLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRLN  498 (624)
Q Consensus       438 ----------------~~~~~L~~L~~L~Ls~N~l~g~ip~--~l~~l~~L~~LdLs~N~l~g~iP~~l-~~l~~L~~L~  498 (624)
                                      ..|+.|++|+.|+|++|.++|.+|.  .+++|++|++|+|++|.+++.+|..+ .++++|++|+
T Consensus        78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  157 (768)
T 3rgz_A           78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD  157 (768)
T ss_dssp             TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred             cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence                            4677888888888888888888887  88888888888888888888888765 7888888889


Q ss_pred             ccCCcCcccCCchh--hhccCCCCEEeccCCCC
Q 006940          499 LNGNTLSGRVPAAL--GGRLLHRASFNFTDNAG  529 (624)
Q Consensus       499 Ls~N~l~g~iP~~~--~~~l~~l~~l~l~~N~~  529 (624)
                      |++|++++..|..+  ...+.+|+.|++++|..
T Consensus       158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l  190 (768)
T 3rgz_A          158 LSANSISGANVVGWVLSDGCGELKHLAISGNKI  190 (768)
T ss_dssp             CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE
T ss_pred             CCCCccCCcCChhhhhhccCCCCCEEECCCCcc
Confidence            98888888777652  22367888898888863

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.47  E-value=7.8e-14  Score=136.63  Aligned_cols=110  Identities=19%  Similarity=0.247  Sum_probs=56.5

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      |+.|+|++|.|++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|++
T Consensus        59 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  138 (220)
T 2v70_A           59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD  138 (220)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred             CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence            44455555555544444555555555555555555544444455555555555555555554455555555555555555


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCG  532 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~  532 (624)
                      |++++..|..+.. +.+|+.|++++|++.|.
T Consensus       139 N~l~~~~~~~~~~-l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          139 NQITTVAPGAFDT-LHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             SCCCCBCTTTTTT-CTTCCEEECCSCCEECS
T ss_pred             CcCCEECHHHhcC-CCCCCEEEecCcCCcCC
Confidence            5555444444433 44555555555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.46  E-value=2e-13  Score=134.47  Aligned_cols=124  Identities=20%  Similarity=0.261  Sum_probs=106.1

Q ss_pred             CCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCC
Q 006940          405 PWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF  479 (624)
Q Consensus       405 ~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~  479 (624)
                      .|.++.|+.....     ....++.|+|++|.|++..|..|.++++|+.|+|++|+++...+..|..+++|+.|+|++|+
T Consensus        20 s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            5999999754221     12358899999999999999999999999999999999986666678999999999999999


Q ss_pred             CCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       480 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      |++..+..+..+++|+.|+|++|+++ .+|..+.. +.+|+.|++++|...
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQNQLK  148 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCSSCCC
T ss_pred             CCccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCCCcCC
Confidence            99777777899999999999999999 88988865 788999999999743

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.45  E-value=2.1e-14  Score=149.54  Aligned_cols=156  Identities=21%  Similarity=0.309  Sum_probs=102.8

Q ss_pred             cCChHHHHHHHHhhhccC-CCCC--CCCC-CCCCCCCCCCCCCcccccCCC----CceeEEEEEEcCCCCCccCCCcccc
Q 006940          370 KTLPEEVRALQVLKNSLD-LPHR--FGWN-GDPCVPQQHPWSGADCQFDRT----SHKWVIDGLGLDNQGLRGFLPNGIS  441 (624)
Q Consensus       370 ~~~~~~~~aL~~~k~~~~-~~~~--~~W~-~~~c~~~~~~w~gv~C~~~~~----~~~~~l~~L~L~~n~l~g~~p~~~~  441 (624)
                      ....++..||++||..+. ++..  ..|. ...|.+..|.|.|+.|.....    ....+++.|+|++|+++ .+|..+.
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~  101 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF  101 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence            345678999999998763 3322  2562 112233345799999952100    00123667788887777 6777777


Q ss_pred             cccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhh-------
Q 006940          442 KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG-------  514 (624)
Q Consensus       442 ~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~-------  514 (624)
                      .|++|+.|+|++|.++ .+|..++.+++|+.|+|++|.++ .+|..++++++|+.|+|++|++.+.+|..+..       
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            7777777777777777 77777777777777777777777 67777777777777777777777777765432       


Q ss_pred             -ccCCCCEEeccCCC
Q 006940          515 -RLLHRASFNFTDNA  528 (624)
Q Consensus       515 -~l~~l~~l~l~~N~  528 (624)
                       .+.+|+.|++++|.
T Consensus       180 ~~l~~L~~L~L~~n~  194 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTG  194 (328)
T ss_dssp             EESTTCCEEEEEEEC
T ss_pred             ccCCCCCEEECcCCC
Confidence             24455666665554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.44  E-value=2e-13  Score=133.70  Aligned_cols=106  Identities=25%  Similarity=0.282  Sum_probs=64.3

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|+|++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+|+...+..+..+++|+.|+|++
T Consensus        34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~  113 (220)
T 2v9t_B           34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA  113 (220)
T ss_dssp             CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence            55666666666665555666666666666666666665566666666666666666666633334455666666666666


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++++..|..+.. +.+|+.|++++|.
T Consensus       114 N~l~~~~~~~~~~-l~~L~~L~L~~N~  139 (220)
T 2v9t_B          114 NKINCLRVDAFQD-LHNLNLLSLYDNK  139 (220)
T ss_dssp             SCCCCCCTTTTTT-CTTCCEEECCSSC
T ss_pred             CCCCEeCHHHcCC-CCCCCEEECCCCc
Confidence            6666544444433 4556666666665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.42  E-value=5.3e-13  Score=129.15  Aligned_cols=126  Identities=20%  Similarity=0.247  Sum_probs=95.7

Q ss_pred             CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC
Q 006940          404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (624)
Q Consensus       404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N  478 (624)
                      |.|.++.|...+..     ....++.|+|++|++++..+..|.++++|+.|+|++|++++..+..+..+++|++|+|++|
T Consensus         7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            57888888743221     1124788999999998776667888899999999999998666666788889999999999


Q ss_pred             CCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      ++++..+..+..+++|+.|+|++|++++..+..+. .+.+|+.|++++|...
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD-KLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCS
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhc-cCCcCCEEECCCCccc
Confidence            88866666678888889999988888854443343 3677888888888643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=1e-12  Score=123.20  Aligned_cols=107  Identities=24%  Similarity=0.305  Sum_probs=92.1

Q ss_pred             EEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCC
Q 006940          423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN  502 (624)
Q Consensus       423 ~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N  502 (624)
                      +.|++++|+|+. +|..+.  ++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..|..+..+++|++|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            458899999885 676653  88999999999999888999999999999999999999777777899999999999999


Q ss_pred             cCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          503 TLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       503 ~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      +|++..|..+.. +.+|+.|++++|++.|.+
T Consensus        89 ~l~~~~~~~~~~-l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           89 QLKSIPRGAFDN-LKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCCCTTTTTT-CTTCCEEECCSSCBCTTB
T ss_pred             ccCEeCHHHhcC-CCCCCEEEeCCCCCCCCc
Confidence            999544444544 789999999999998864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.39  E-value=8e-13  Score=129.40  Aligned_cols=112  Identities=24%  Similarity=0.312  Sum_probs=101.1

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .|+.|+|++|.|++..|..|.+|++|+.|+|++|+|+...+..|..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence            48899999999999999999999999999999999996666668999999999999999999889999999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      +|++++..+..+.. +.+|+.|++++|++.|.+
T Consensus       137 ~N~l~~~~~~~~~~-l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B          137 DNKLQTIAKGTFSP-LRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             SSCCSCCCTTTTTT-CTTCCEEECCSSCEECSG
T ss_pred             CCcCCEECHHHHhC-CCCCCEEEeCCCCcCCCC
Confidence            99999665555554 788999999999998864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.37  E-value=1.6e-13  Score=141.81  Aligned_cols=114  Identities=31%  Similarity=0.428  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|. +..+++|+.|+|++|+++|.+|..+..+++|+.|+|++
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence            77899999999999999999999999999999999987775 88899999999999999999999999999999999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCCCCCCCCCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC  539 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~~~~~c  539 (624)
                      |+++|.+|.. . .+.+|+.+++.+|+++|+.|.. .|
T Consensus       278 N~l~~~ip~~-~-~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          278 NNLCGEIPQG-G-NLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             SEEEEECCCS-T-TGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CcccccCCCC-c-cccccChHHhcCCCCccCCCCC-CC
Confidence            9999999986 3 4778999999999999997543 46

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.37  E-value=1.4e-12  Score=128.42  Aligned_cols=111  Identities=21%  Similarity=0.246  Sum_probs=98.2

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .|+.|+|++|.|....+..|..|++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|+
T Consensus        65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  143 (229)
T 3e6j_A           65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD  143 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence            3888999999998766677899999999999999999777777899999999999999999 899999999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      +|++++. |......+.+|+.|++++|++.|.+
T Consensus       144 ~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          144 QNQLKSI-PHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SSCCCCC-CTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCcCCcc-CHHHHhCCCCCCEEEeeCCCccCCc
Confidence            9999954 5443344788999999999998864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=2e-12  Score=121.71  Aligned_cols=107  Identities=23%  Similarity=0.290  Sum_probs=92.3

Q ss_pred             EEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCC
Q 006940          423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN  502 (624)
Q Consensus       423 ~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N  502 (624)
                      +.+++++|+|. .+|..+.  ++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+.++++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            35899999985 6777664  89999999999999988999999999999999999999766666799999999999999


Q ss_pred             cCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          503 TLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       503 ~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      ++++ +|......+.+|+.|++++|++.|.+
T Consensus        92 ~l~~-l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKS-IPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCC-CCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ccce-eCHHHhccccCCCEEEeCCCCccccc
Confidence            9995 55553334789999999999998864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.36  E-value=1.5e-12  Score=127.50  Aligned_cols=127  Identities=19%  Similarity=0.185  Sum_probs=107.9

Q ss_pred             CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCc-ccccccccccccCcCccccccCCCCcCCCccCCeEeccC
Q 006940          404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPN-GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY  477 (624)
Q Consensus       404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~-~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~  477 (624)
                      |.|..+.|+.....     ....++.|+|++|+|++..|. .|..+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            46778888643221     112367899999999988664 589999999999999999988888999999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940          478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLC  531 (624)
Q Consensus       478 N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc  531 (624)
                      |.+++..|..+..+++|+.|+|++|++++..|..+.. +.+|+.|++++|....
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~  143 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG-LSSVRLLSLYDNQITT  143 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTT-CTTCSEEECTTSCCCC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCC-CccCCEEECCCCcCCE
Confidence            9999888888999999999999999999887877765 7889999999997443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.35  E-value=2.9e-12  Score=129.43  Aligned_cols=112  Identities=25%  Similarity=0.311  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..++.+++|+.|+|++
T Consensus       111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  190 (272)
T 3rfs_A          111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ  190 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence            77899999999887777788899999999999999877777788899999999999999977777788899999999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  534 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~  534 (624)
                      |++++..|..+.. +.+|+.|++++|++.|.++
T Consensus       191 N~l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          191 NQLKSVPDGVFDR-LTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             SCCSCCCTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred             CcCCccCHHHHhC-CcCCCEEEccCCCccccCc
Confidence            9998765554544 7888999999998887653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.33  E-value=4e-12  Score=126.79  Aligned_cols=110  Identities=23%  Similarity=0.312  Sum_probs=89.3

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      |+.|+|++|.|++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++
T Consensus        85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A           85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence            77888888888877777788888888888888888866666678888888999998888866666788888889999998


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCG  532 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~  532 (624)
                      |++++..|..+.. +.+|+.|++++|++.|.
T Consensus       165 N~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          165 NQLQSVPHGAFDR-LGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SCCSCCCTTTTTT-CTTCCEEECCSCCBCTT
T ss_pred             CcCCccCHHHHhC-CCCCCEEEeeCCceeCC
Confidence            8888555544543 67888888888888775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.33  E-value=1.5e-12  Score=146.74  Aligned_cols=113  Identities=24%  Similarity=0.306  Sum_probs=103.3

Q ss_pred             EEEEEEcCCCCCc-cCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L  499 (624)
                      .++.|+|++|++. +..|..|..|++|+.|+|++|++++..|..|.+|++|+.|+|++|+|++..|..+.++++|+.|+|
T Consensus       470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  549 (635)
T 4g8a_A          470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  549 (635)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred             hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence            3778999999854 457788999999999999999999999999999999999999999999888899999999999999


Q ss_pred             cCCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      ++|++++..|..+.....+|+.|++++|++.|.|
T Consensus       550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            9999999988888765578999999999999975

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.30  E-value=6.3e-12  Score=128.42  Aligned_cols=110  Identities=25%  Similarity=0.271  Sum_probs=95.4

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.|++..|..|.+|++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|++
T Consensus       102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  181 (290)
T 1p9a_G          102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE  181 (290)
T ss_dssp             CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence            77899999999987778899999999999999999977777788999999999999999955555678899999999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      |+++ .+|..+.. ...|+.+++++|++.|.|
T Consensus       182 N~l~-~ip~~~~~-~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          182 NSLY-TIPKGFFG-SHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             SCCC-CCCTTTTT-TCCCSEEECCSCCBCCSG
T ss_pred             CcCC-ccChhhcc-cccCCeEEeCCCCccCcC
Confidence            9998 78888776 567899999999998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.28  E-value=5.9e-12  Score=131.68  Aligned_cols=105  Identities=17%  Similarity=0.186  Sum_probs=87.5

Q ss_pred             EEcCCC-CCccCCCcccccccccccccCcC-ccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCC
Q 006940          425 LGLDNQ-GLRGFLPNGISKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN  502 (624)
Q Consensus       425 L~L~~n-~l~g~~p~~~~~L~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N  502 (624)
                      ++++++ +|+. +|. |..+++|+.|+|++ |+|++..|..|..|++|+.|+|++|+|++..|..|.+|++|+.|+|++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            344555 6664 777 99999999999996 9999888888999999999999999999988888999999999999999


Q ss_pred             cCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          503 TLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       503 ~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      +|+ .+|......+. |+.|++.+|++.|.|
T Consensus        91 ~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           91 ALE-SLSWKTVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             CCS-CCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred             ccc-eeCHHHcccCC-ceEEEeeCCCccCCC
Confidence            999 45655544344 899999999988865

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.27  E-value=1.3e-11  Score=124.43  Aligned_cols=112  Identities=23%  Similarity=0.310  Sum_probs=98.2

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+++..+..+..+++|+.|+|+
T Consensus       110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  189 (270)
T 2o6q_A          110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD  189 (270)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence            37889999999999888889999999999999999997766778999999999999999997777778999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      +|++++ +|......+.+|+.|++++|++.|.+
T Consensus       190 ~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          190 NNQLKR-VPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             SSCCSC-CCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             CCcCCc-CCHHHhccccCCCEEEecCCCeeCCC
Confidence            999995 55543344788999999999999875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.26  E-value=4.8e-12  Score=115.51  Aligned_cols=105  Identities=22%  Similarity=0.259  Sum_probs=90.3

Q ss_pred             EEEEEEcCCCCCc-cCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L  499 (624)
                      .++.|++++|.++ +.+|..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            3778999999998 88898889999999999999999866  78889999999999999999888888888999999999


Q ss_pred             cCCcCccc-CCchhhhccCCCCEEeccCCC
Q 006940          500 NGNTLSGR-VPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       500 s~N~l~g~-iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      ++|++++. .|..+.. +++|+.|++++|+
T Consensus        96 s~N~i~~~~~~~~~~~-l~~L~~L~l~~N~  124 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKK-LENLKSLDLFNCE  124 (149)
T ss_dssp             TTSCCCSHHHHGGGGG-CTTCCEEECTTCG
T ss_pred             CCCcCCChHHHHHHhh-CCCCCEEeCcCCc
Confidence            99999863 3355554 7889999999986

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.25  E-value=8.3e-12  Score=135.28  Aligned_cols=113  Identities=29%  Similarity=0.360  Sum_probs=89.4

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+.+..|..|.++++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus       300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  379 (455)
T 3v47_A          300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD  379 (455)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence            37778888888888778788888888888888888887777788888888888888888887778888888888888888


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  534 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~  534 (624)
                      +|++++ +|......+.+|+.|++++|++.|.++
T Consensus       380 ~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          380 TNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             SSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCcccc-CCHhHhccCCcccEEEccCCCcccCCC
Confidence            888885 454443346778888888888877654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.25  E-value=9.8e-12  Score=129.28  Aligned_cols=110  Identities=23%  Similarity=0.374  Sum_probs=86.7

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.|+ .+|..+.++++|+.|+|++|++++ +|..+..+++|+.|+|++|++.+.+|..++.+++|+.|+|++
T Consensus       185 L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             CCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred             CCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence            677888888887 777778888888888888888884 566788888888888888888888888888888888888888


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  534 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~  534 (624)
                      |++.+.+|..+.. +.+|+.|++++|+.+...|
T Consensus       263 n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          263 CSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             CTTCCBCCTTGGG-CTTCCEEECTTCTTCCCCC
T ss_pred             CCchhhcchhhhc-CCCCCEEeCCCCCchhhcc
Confidence            8888888877765 6778888888877655443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.25  E-value=1e-11  Score=118.66  Aligned_cols=90  Identities=26%  Similarity=0.352  Sum_probs=85.6

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.|++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            38889999999999999999999999999999999999989889999999999999999999999999999999999999


Q ss_pred             CCcCcccCCc
Q 006940          501 GNTLSGRVPA  510 (624)
Q Consensus       501 ~N~l~g~iP~  510 (624)
                      +|++++..+-
T Consensus       135 ~N~l~c~c~l  144 (192)
T 1w8a_A          135 SNPFNCNCHL  144 (192)
T ss_dssp             TCCBCCSGGG
T ss_pred             CCCccCcCcc
Confidence            9999987764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.24  E-value=2.2e-11  Score=121.47  Aligned_cols=107  Identities=21%  Similarity=0.270  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      |+.|+|++|.|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus        61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  140 (251)
T 3m19_A           61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT  140 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence            66777777777777776777777777777777777766666677777888888888877755555667778888888888


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      |++++..|..+.. +.+|+.|++++|..
T Consensus       141 N~l~~~~~~~~~~-l~~L~~L~L~~N~l  167 (251)
T 3m19_A          141 NQLQSIPAGAFDK-LTNLQTLSLSTNQL  167 (251)
T ss_dssp             SCCCCCCTTTTTT-CTTCCEEECCSSCC
T ss_pred             CcCCccCHHHcCc-CcCCCEEECCCCcC
Confidence            8877444434443 67788888888764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.23  E-value=8.2e-12  Score=128.10  Aligned_cols=112  Identities=24%  Similarity=0.308  Sum_probs=97.4

Q ss_pred             EEEEEcCCCCCcc-CCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          422 IDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       422 l~~L~L~~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      ++.|+|++|.+.+ .+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|.+++..+..+..+++|+.|+|+
T Consensus       152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  231 (306)
T 2z66_A          152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  231 (306)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred             CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence            7789999999987 678888999999999999999998888889999999999999999997777788889999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      +|++++..|..+.....+|+.|++++|++.|.+
T Consensus       232 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             TSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             CCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            999998888877664458899999999987764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.23  E-value=1.3e-11  Score=125.42  Aligned_cols=111  Identities=25%  Similarity=0.293  Sum_probs=95.0

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++
T Consensus       131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence            78899999999877777788999999999999999976666789999999999999999988899999999999999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      |++++..+..+. .+.+|+.|++++|++.|.+
T Consensus       211 n~l~~~~~~~~~-~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          211 NNLSALPTEALA-PLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             SCCSCCCHHHHT-TCTTCCEEECCSSCEECSG
T ss_pred             CcCCcCCHHHcc-cCcccCEEeccCCCccCCC
Confidence            999964444454 4788999999999988864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.22  E-value=3.9e-11  Score=115.89  Aligned_cols=112  Identities=24%  Similarity=0.271  Sum_probs=98.2

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  132 (208)
T 2o6s_A           53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY  132 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence            48899999999997777778999999999999999997777778999999999999999997777778999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      +|++++. |......+.+|+.|++++|++.|.+
T Consensus       133 ~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A          133 QNQLKSV-PDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             SSCCSCC-CTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             CCcccee-CHHHhccCCCccEEEecCCCeecCC
Confidence            9999954 4443334788999999999988865

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.21  E-value=5.1e-11  Score=120.07  Aligned_cols=134  Identities=19%  Similarity=0.241  Sum_probs=79.8

Q ss_pred             CCCCCCCCCCCCCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCC
Q 006940          393 GWNGDPCVPQQHPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTI  467 (624)
Q Consensus       393 ~W~~~~c~~~~~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l  467 (624)
                      .|.+..|... ..|..+.|......     ....++.|+|++|++++..+..|.++++|+.|+|++|+++...+..|..+
T Consensus         6 ~~~~~~C~c~-~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l   84 (270)
T 2o6q_A            6 KKDGGVCSCN-NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL   84 (270)
T ss_dssp             GGGTCSBEEE-TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred             CCCCCCCEeC-CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence            5666655311 13555666532211     11236778888888877666677777778888887777775444455667


Q ss_pred             ccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          468 ASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       468 ~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      ++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+.. +.+|+.|++++|.
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~  144 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-LTKLTYLSLGYNE  144 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSC
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-CcCCCEEECCCCc
Confidence            77777777777776555555566666666666666666443333322 4445555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.20  E-value=1.6e-11  Score=114.46  Aligned_cols=104  Identities=25%  Similarity=0.271  Sum_probs=56.4

Q ss_pred             EEEEEcCCCCCc-cCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          422 IDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       422 l~~L~L~~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      ++.|+|++|+++ +.+|..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|+
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            445556665555 55555555555666666666655543  455555556666666666555555555555556666666


Q ss_pred             CCcCcccC-CchhhhccCCCCEEeccCCC
Q 006940          501 GNTLSGRV-PAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       501 ~N~l~g~i-P~~~~~~l~~l~~l~l~~N~  528 (624)
                      +|++++.. +..+.. +.+|+.|++++|+
T Consensus       104 ~N~l~~~~~~~~l~~-l~~L~~L~l~~N~  131 (168)
T 2ell_A          104 GNKLKDISTLEPLKK-LECLKSLDLFNCE  131 (168)
T ss_dssp             SSSCCSSGGGGGGSS-CSCCCEEECCSSG
T ss_pred             CCccCcchhHHHHhc-CCCCCEEEeeCCc
Confidence            66555321 123322 4555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.20  E-value=2.1e-11  Score=114.19  Aligned_cols=106  Identities=16%  Similarity=0.181  Sum_probs=90.3

Q ss_pred             CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC
Q 006940          404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (624)
Q Consensus       404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N  478 (624)
                      |.|..+.|+.....     ....++.|+|++|.|++..|..|.+|++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            45777777643221     1135788999999999999999999999999999999999777777899999999999999


Q ss_pred             CCCCCCccccCCCCCCCEEeccCCcCcccCC
Q 006940          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVP  509 (624)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP  509 (624)
                      +|++..|..+..+++|+.|+|++|+++...+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9997777789999999999999999986644

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.20  E-value=1.6e-11  Score=138.24  Aligned_cols=113  Identities=20%  Similarity=0.193  Sum_probs=97.3

Q ss_pred             EEEEEEcCCCCCcc-CCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L  499 (624)
                      .++.|+|++|.+.+ .+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|
T Consensus       449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  528 (606)
T 3vq2_A          449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC  528 (606)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence            37789999999888 47888889999999999999999888888999999999999999999888999999999999999


Q ss_pred             cCCcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940          500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  534 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~  534 (624)
                      ++|+++ .+|..+.....+|+.+++++|++.|.++
T Consensus       529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            999998 7787766533469999999999998753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.20  E-value=1.7e-11  Score=136.17  Aligned_cols=110  Identities=22%  Similarity=0.264  Sum_probs=97.5

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+++..|..|.++++|+.|+|++|++++..|..|..+++|++|+|++|.+++..|..++++++|++|+|+
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            58899999999999989999999999999999999998888999999999999999999998888889999999999999


Q ss_pred             CCcCcc-cCCchhhhccCCCCEEeccCCCCCC
Q 006940          501 GNTLSG-RVPAALGGRLLHRASFNFTDNAGLC  531 (624)
Q Consensus       501 ~N~l~g-~iP~~~~~~l~~l~~l~l~~N~~lc  531 (624)
                      +|++++ .+|..+.. +.+|+.|++++|....
T Consensus       107 ~n~l~~~~~~~~~~~-l~~L~~L~L~~n~~~~  137 (549)
T 2z81_A          107 GNPYQTLGVTSLFPN-LTNLQTLRIGNVETFS  137 (549)
T ss_dssp             TCCCSSSCSSCSCTT-CTTCCEEEEEESSSCC
T ss_pred             CCcccccchhhhhhc-cCCccEEECCCCcccc
Confidence            999986 45666654 6788899988886433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.18  E-value=3.2e-11  Score=127.04  Aligned_cols=126  Identities=19%  Similarity=0.137  Sum_probs=98.3

Q ss_pred             CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccc-cccccccccCcCccccccCCCCcCCCccCCeEeccC
Q 006940          404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY  477 (624)
Q Consensus       404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~  477 (624)
                      |.+..+.|......     ....++.|+|++|+|++..+..+. ++++|+.|+|++|+|++..+..|..+++|+.|+|++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            45666777543211     112367899999999887777777 889999999999999877777888999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       478 N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      |+|++..+..+..+++|+.|+|++|++++..|..+.. +.+|+.|++++|...
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-MAQLQKLYLSQNQIS  149 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC-cccCCEEECCCCcCC
Confidence            9998776777888899999999999998666666655 678888888888743

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.18  E-value=3.3e-11  Score=134.54  Aligned_cols=102  Identities=26%  Similarity=0.341  Sum_probs=92.9

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.|++ +|. |+.|++|+.|+|++|+|+ .+|..++.|++|+.|+|++|+|++ +| .++.+++|+.|+|++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            6679999999997 676 999999999999999999 889999999999999999999996 78 899999999999999


Q ss_pred             CcCcccC-CchhhhccCCCCEEeccCCCC
Q 006940          502 NTLSGRV-PAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       502 N~l~g~i-P~~~~~~l~~l~~l~l~~N~~  529 (624)
                      |++++.. |..+.. +.+|+.|++++|+.
T Consensus       518 N~l~~~~~p~~l~~-l~~L~~L~L~~N~l  545 (567)
T 1dce_A          518 NRLQQSAAIQPLVS-CPRLVLLNLQGNSL  545 (567)
T ss_dssp             SCCCSSSTTGGGGG-CTTCCEEECTTSGG
T ss_pred             CCCCCCCCcHHHhc-CCCCCEEEecCCcC
Confidence            9999776 888876 78999999999984

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.18  E-value=6.8e-11  Score=119.33  Aligned_cols=109  Identities=19%  Similarity=0.210  Sum_probs=93.6

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+++..+..+.++++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus        86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A           86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence            47889999999998877788999999999999999998777778999999999999999997777778899999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +|++++..|..+.. +.+|+.|++++|...
T Consensus       166 ~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          166 YNQLQSLPEGVFDK-LTQLKDLRLYQNQLK  194 (272)
T ss_dssp             SSCCCCCCTTTTTT-CTTCCEEECCSSCCS
T ss_pred             CCCcCccCHHHhcC-CccCCEEECCCCcCC
Confidence            99999655544443 788999999999744

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.16  E-value=4.5e-11  Score=133.21  Aligned_cols=113  Identities=21%  Similarity=0.293  Sum_probs=103.0

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCcccc-ccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L  499 (624)
                      .++.|+|++|.+.+..|..+.++++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|
T Consensus       422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence            4788999999999999999999999999999999998 689999999999999999999999988999999999999999


Q ss_pred             cCCcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940          500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  534 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~  534 (624)
                      ++|++++..|..+.. +.+|+.|++++|++.|.++
T Consensus       502 ~~n~l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          502 ASNQLKSVPDGIFDR-LTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CSSCCSCCCTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred             CCCcCCCCCHHHhhc-ccCCcEEEecCCcccCCCc
Confidence            999999776665554 7889999999999998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.16  E-value=5.4e-11  Score=125.32  Aligned_cols=106  Identities=22%  Similarity=0.273  Sum_probs=62.8

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      |+.|+|++|+|++..+..|.+|++|+.|+|++|+|++..+..|..|++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus        66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  145 (361)
T 2xot_A           66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ  145 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence            55566666666665555566666666666666666655555566666666666666666655556666666666666666


Q ss_pred             CcCcccCCchhh---hccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALG---GRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~---~~l~~l~~l~l~~N~  528 (624)
                      |+++ .+|..+.   ..+.+|+.|++++|.
T Consensus       146 N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             SCCC-SCCGGGTC----CTTCCEEECCSSC
T ss_pred             CcCC-eeCHHHhcCcccCCcCCEEECCCCC
Confidence            6666 3444432   224555666666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.16  E-value=3.6e-11  Score=135.34  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=88.8

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|+|++..+..|.+|++|+.|+|++|+|++..|..|.+|++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            47889999999998878889999999999999999997777788999999999999999986666778888888888888


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      +|++++..+..+.. +.+|+.|++++|..
T Consensus       133 ~N~l~~l~~~~~~~-L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          133 ETNLASLENFPIGH-LKTLKELNVAHNLI  160 (635)
T ss_dssp             TSCCCCSTTCCCTT-CTTCCEEECCSSCC
T ss_pred             CCcCCCCChhhhhc-CcccCeeccccCcc
Confidence            88888544334443 67788888888764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.16  E-value=4.7e-11  Score=129.17  Aligned_cols=110  Identities=25%  Similarity=0.323  Sum_probs=98.8

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .|+.|+|++|+|+. +| .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus       186 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (440)
T 3zyj_A          186 NLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA  263 (440)
T ss_dssp             SCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred             ccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence            38889999999984 45 58899999999999999999989999999999999999999999889999999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      +|++++ +|......+.+|+.|++++|++.|.|
T Consensus       264 ~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          264 HNNLTL-LPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             TSCCCC-CCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             CCCCCc-cChhHhccccCCCEEEcCCCCccCCC
Confidence            999995 45544444788999999999999976

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.15  E-value=9.8e-11  Score=119.50  Aligned_cols=108  Identities=25%  Similarity=0.264  Sum_probs=96.8

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.|+ .+|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus        78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            3788999999998 688889999999999999999998778889999999999999999997777778999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +|+++ .+|......+.+|+.|++++|+..
T Consensus       157 ~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          157 NNNLT-ELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             TSCCS-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCC-ccCHHHhcCcCCCCEEECCCCcCC
Confidence            99999 667666555889999999999854

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.14  E-value=5.3e-11  Score=136.87  Aligned_cols=102  Identities=27%  Similarity=0.428  Sum_probs=50.0

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      |+.|+|++|.|. .+|..+.+|++|+.|+|++|.|+ .+|..|++|++|+.|+|++|.|+ .+|..+++|++|+.|+|++
T Consensus       226 L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~  302 (727)
T 4b8c_D          226 WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD  302 (727)
T ss_dssp             CCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred             CcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence            444555555544 44444445555555555555554 44444555555555555555554 4454455555555555555


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |.|+ .+|..+.. +.+|+.|+|++|+
T Consensus       303 N~l~-~lp~~~~~-l~~L~~L~L~~N~  327 (727)
T 4b8c_D          303 NMVT-TLPWEFGN-LCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCC-CCCSSTTS-CTTCCCEECTTSC
T ss_pred             CCCC-ccChhhhc-CCCccEEeCCCCc
Confidence            5544 44444333 4444555555444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.14  E-value=4.8e-11  Score=129.56  Aligned_cols=110  Identities=24%  Similarity=0.293  Sum_probs=98.7

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .|+.|+|++|+|++. | .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus       197 ~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  274 (452)
T 3zyi_A          197 NLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA  274 (452)
T ss_dssp             TCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence            378899999999864 3 58899999999999999999999999999999999999999999989999999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      +|++++ +|......+.+|+.|++++|++.|.|
T Consensus       275 ~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          275 HNNLSS-LPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             SSCCSC-CCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             CCcCCc-cChHHhccccCCCEEEccCCCcCCCC
Confidence            999994 45444444788999999999999976

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.14  E-value=2.2e-11  Score=142.68  Aligned_cols=108  Identities=21%  Similarity=0.273  Sum_probs=94.0

Q ss_pred             EEEEEEcCCCCCc-----cCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCC
Q 006940          421 VIDGLGLDNQGLR-----GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR  495 (624)
Q Consensus       421 ~l~~L~L~~n~l~-----g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~  495 (624)
                      .++.|+|++|.++     +..+..|.+|++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..|..+.  ++|+
T Consensus       452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~  529 (844)
T 3j0a_A          452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLE  529 (844)
T ss_dssp             TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCC
T ss_pred             ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cccc
Confidence            3777899999987     44556788999999999999999999999999999999999999999976666655  8999


Q ss_pred             EEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940          496 RLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  534 (624)
Q Consensus       496 ~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~  534 (624)
                      .|+|++|++++..|..+    .+|+.+++++|++.|.|+
T Consensus       530 ~L~Ls~N~l~~~~~~~~----~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          530 ILDISRNQLLAPNPDVF----VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             EEEEEEECCCCCCSCCC----SSCCEEEEEEECCCCSSS
T ss_pred             EEECCCCcCCCCChhHh----CCcCEEEecCCCcccccc
Confidence            99999999999888754    468999999999999663

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.11  E-value=1.4e-10  Score=117.54  Aligned_cols=109  Identities=23%  Similarity=0.229  Sum_probs=96.2

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+.+..|..+.++++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus       106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence            37889999999998888889999999999999999997777779999999999999999996666678999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +|++++..|..+.. +.+|+.|++++|...
T Consensus       186 ~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          186 QNRVAHVHPHAFRD-LGRLMTLYLFANNLS  214 (285)
T ss_dssp             SSCCCEECTTTTTT-CTTCCEEECCSSCCS
T ss_pred             CCcccccCHhHccC-cccccEeeCCCCcCC
Confidence            99999888887765 788999999999743

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.11  E-value=1.8e-10  Score=116.26  Aligned_cols=108  Identities=20%  Similarity=0.287  Sum_probs=79.2

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCC-CCccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g-~iP~~l~~l~~L~~L~L  499 (624)
                      .++.|+|++|.+++..+..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|.+++ .+|..+..+++|+.|+|
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L  156 (276)
T 2z62_A           77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  156 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence            36778888888877777777788888888888888876666677788888888888888775 36777888888888888


Q ss_pred             cCCcCcccCCchhhhccCCCC----EEeccCCCC
Q 006940          500 NGNTLSGRVPAALGGRLLHRA----SFNFTDNAG  529 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~----~l~l~~N~~  529 (624)
                      ++|++++..+..+.. +..++    .+++++|..
T Consensus       157 s~N~l~~~~~~~~~~-l~~L~~l~l~L~ls~n~l  189 (276)
T 2z62_A          157 SSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPM  189 (276)
T ss_dssp             CSSCCCEECGGGGHH-HHTCTTCCEEEECCSSCC
T ss_pred             CCCCCCcCCHHHhhh-hhhccccceeeecCCCcc
Confidence            888887655554443 34444    677777763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.10  E-value=8.2e-11  Score=123.29  Aligned_cols=107  Identities=25%  Similarity=0.342  Sum_probs=93.1

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|++++..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+.++++|++|+|+
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            58899999999998777789999999999999999998888899999999999999999996555558999999999999


Q ss_pred             CCcCcccCCc-hhhhccCCCCEEeccCCC
Q 006940          501 GNTLSGRVPA-ALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       501 ~N~l~g~iP~-~~~~~l~~l~~l~l~~N~  528 (624)
                      +|+++ .+|. .....+.+|+.|++++|.
T Consensus       133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A          133 GNPYK-TLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             TCCCS-SSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CCCCc-ccCchhhhccCCCCcEEECCCCc
Confidence            99998 5665 333347889999999885

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.10  E-value=1.2e-10  Score=126.15  Aligned_cols=109  Identities=19%  Similarity=0.210  Sum_probs=102.0

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+++..|..+..+++|+.|+|+
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            37889999999999999999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +|++++..|..+.. +.+|+.|++++|...
T Consensus       356 ~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          356 YNHIRALGDQSFLG-LPNLKELALDTNQLK  384 (455)
T ss_dssp             SSCCCEECTTTTTT-CTTCCEEECCSSCCS
T ss_pred             CCcccccChhhccc-cccccEEECCCCccc
Confidence            99999888887776 789999999999854

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.10  E-value=3.7e-11  Score=109.53  Aligned_cols=103  Identities=23%  Similarity=0.259  Sum_probs=89.2

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCC-CccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~-iP~~l~~l~~L~~L~L  499 (624)
                      .++.|+|++|.+++.  ..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|.+++. .|..+..+++|+.|+|
T Consensus        43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence            388899999999987  7899999999999999999988898888899999999999999963 4588999999999999


Q ss_pred             cCCcCcccCC---chhhhccCCCCEEeccC
Q 006940          500 NGNTLSGRVP---AALGGRLLHRASFNFTD  526 (624)
Q Consensus       500 s~N~l~g~iP---~~~~~~l~~l~~l~l~~  526 (624)
                      ++|++++..+   ..+. .+++|+.|++++
T Consensus       121 ~~N~l~~~~~~~~~~~~-~l~~L~~L~l~d  149 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFK-LLPQLTYLDGYD  149 (149)
T ss_dssp             TTCGGGGSTTHHHHHHH-HCTTCCEETTBC
T ss_pred             cCCcccchHHHHHHHHH-HCCCcccccCCC
Confidence            9999996544   2344 478899988763

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.09  E-value=1.4e-10  Score=126.51  Aligned_cols=123  Identities=17%  Similarity=0.212  Sum_probs=92.3

Q ss_pred             CCCCcccccCCC-----CceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCC
Q 006940          405 PWSGADCQFDRT-----SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF  479 (624)
Q Consensus       405 ~w~gv~C~~~~~-----~~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~  479 (624)
                      .|..+.|.....     .....++.|+|++|+|++..|..|.++++|+.|+|++|.+++..|..|.+|++|+.|+|++|+
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            356677763221     112247788888888888888888888888888888888888778888888888888888888


Q ss_pred             CCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       480 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      +++..+..+.++++|+.|+|++|++++..|..+.. +.+|+.|++++|.
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~l~~n~  139 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD-LYNLKSLEVGDND  139 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEEECCTT
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccc-cccCCEEECCCCc
Confidence            88555556788888888888888888766665544 5667777777765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.09  E-value=1.7e-10  Score=125.20  Aligned_cols=120  Identities=22%  Similarity=0.272  Sum_probs=93.2

Q ss_pred             CCCcccccCCC-----CceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCC
Q 006940          406 WSGADCQFDRT-----SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF  480 (624)
Q Consensus       406 w~gv~C~~~~~-----~~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l  480 (624)
                      |..+.|...+.     .....++.|+|++|+|++..|..|.+|++|+.|+|++|++++..|..|.++++|+.|+|++|++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            55677764321     1123578899999999999899999999999999999999988889999999999999999999


Q ss_pred             CCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccC
Q 006940          481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTD  526 (624)
Q Consensus       481 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~  526 (624)
                      ++..+..+..+++|+.|+|++|+++. +|......+.+|+.|++++
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCC
T ss_pred             CccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCC
Confidence            97767778999999999999999984 4443222244455555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.09  E-value=1.5e-10  Score=108.82  Aligned_cols=87  Identities=20%  Similarity=0.269  Sum_probs=79.5

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.|++..|..|.+|++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|+
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            47899999999999999999999999999999999997666668999999999999999996666679999999999999


Q ss_pred             CCcCccc
Q 006940          501 GNTLSGR  507 (624)
Q Consensus       501 ~N~l~g~  507 (624)
                      +|++...
T Consensus       114 ~N~~~c~  120 (174)
T 2r9u_A          114 NNPWDCE  120 (174)
T ss_dssp             SSCBCTT
T ss_pred             CCCcccc
Confidence            9999854

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.09  E-value=9.7e-11  Score=131.72  Aligned_cols=111  Identities=23%  Similarity=0.272  Sum_probs=90.3

Q ss_pred             EEEEEEcCCCCCccC---CCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEE
Q 006940          421 VIDGLGLDNQGLRGF---LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL  497 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~---~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L  497 (624)
                      .++.|+|++|.+.+.   .+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+.++++| .|
T Consensus       450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L  528 (606)
T 3t6q_A          450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL  528 (606)
T ss_dssp             TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred             CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence            377788888888762   33567888888888888888888888888888888888888888888888888888888 88


Q ss_pred             eccCCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          498 NLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       498 ~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      +|++|++++..|..+.. +.+|+.+++++|++.|.|
T Consensus       529 ~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          529 NLASNHISIILPSLLPI-LSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             ECCSSCCCCCCGGGHHH-HHTSSEEECTTCCEECSG
T ss_pred             ECcCCcccccCHhhccc-CCCCCEEeCCCCCccccC
Confidence            88888888766666654 677888999999888864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.09  E-value=1e-10  Score=112.10  Aligned_cols=103  Identities=23%  Similarity=0.288  Sum_probs=54.1

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|++++|.+.  .++.+..+++|+.|+|++|++++..|..+..|++|+.|+|++|.+++..|..++.+++|+.|+|++
T Consensus        68 L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  145 (197)
T 4ezg_A           68 IKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY  145 (197)
T ss_dssp             CSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred             CCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence            445555555332  223455555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++.+.+| .+.. +.+|+.|++++|.
T Consensus       146 n~~i~~~~-~l~~-l~~L~~L~l~~n~  170 (197)
T 4ezg_A          146 NGAITDIM-PLKT-LPELKSLNIQFDG  170 (197)
T ss_dssp             CTBCCCCG-GGGG-CSSCCEEECTTBC
T ss_pred             CCCccccH-hhcC-CCCCCEEECCCCC
Confidence            55222444 2322 4455555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.08  E-value=2.3e-10  Score=117.17  Aligned_cols=110  Identities=19%  Similarity=0.244  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccc-cCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      ++.|+|++|.+.+..+..+..+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++..|..+..+++|+.|+|+
T Consensus       128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  207 (306)
T ss_dssp             CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence            7889999999999999999999999999999999997 689999999999999999999998889999999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCG  532 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~  532 (624)
                      +|++++..+..+.. +.+|+.|++++|+....
T Consensus       208 ~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          208 HNNFFSLDTFPYKC-LNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             TSCCSBCCSGGGTT-CTTCCEEECTTSCCCBC
T ss_pred             CCccCccChhhccC-cccCCEeECCCCCCccc
Confidence            99999665555544 78899999999985543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.08  E-value=7.4e-11  Score=109.85  Aligned_cols=106  Identities=25%  Similarity=0.268  Sum_probs=91.7

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCC-ccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~i-P~~l~~l~~L~~L~L  499 (624)
                      .++.|+|++|.|++.  ..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|.+++.. +..+..+++|+.|+|
T Consensus        50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence            488999999999986  78999999999999999999888888888999999999999999532 278999999999999


Q ss_pred             cCCcCcccCC---chhhhccCCCCEEeccCCCC
Q 006940          500 NGNTLSGRVP---AALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       500 s~N~l~g~iP---~~~~~~l~~l~~l~l~~N~~  529 (624)
                      ++|++++..+   ..+. .+++|+.|++++|..
T Consensus       128 ~~N~l~~~~~~~~~~~~-~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          128 FNCEVTNLNDYRESVFK-LLPQLTYLDGYDRED  159 (168)
T ss_dssp             CSSGGGTSTTHHHHHHT-TCSSCCEETTEETTS
T ss_pred             eCCcCcchHHHHHHHHH-hCccCcEecCCCCCh
Confidence            9999995533   2444 478999999999874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.08  E-value=2.6e-10  Score=128.18  Aligned_cols=90  Identities=20%  Similarity=0.346  Sum_probs=45.2

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCC-CCccccCCCCCCCEEecc
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNLN  500 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g-~iP~~l~~l~~L~~L~Ls  500 (624)
                      ++.|+|++|.+++..|..|++|++|+.|+|++|.+++..|..++++++|++|+|++|.+++ .+|..++++++|++|+|+
T Consensus        82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls  161 (606)
T 3vq2_A           82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS  161 (606)
T ss_dssp             CCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred             cCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence            4445555555554445555555555555555555554444445555555555555555543 345555555555555555


Q ss_pred             CCcCcccCCch
Q 006940          501 GNTLSGRVPAA  511 (624)
Q Consensus       501 ~N~l~g~iP~~  511 (624)
                      +|++++..|..
T Consensus       162 ~n~l~~~~~~~  172 (606)
T 3vq2_A          162 YNYIQTITVND  172 (606)
T ss_dssp             SSCCCEECTTT
T ss_pred             CCcceecChhh
Confidence            55555444433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.07  E-value=1.1e-10  Score=127.37  Aligned_cols=112  Identities=21%  Similarity=0.212  Sum_probs=99.3

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.|+...+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS  304 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence            37889999999996555688999999999999999998888889999999999999999999999999999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      +|++++ +|......+.+|+.|++++|++.|.+
T Consensus       305 ~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          305 GNQLTT-LEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             SSCCSC-CCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             CCcCce-eCHhHcCCCcccCEEEccCCCccCcc
Confidence            999995 55544444788999999999998875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.06  E-value=2.7e-10  Score=128.10  Aligned_cols=110  Identities=17%  Similarity=0.060  Sum_probs=96.0

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.|++..|..|.++++|+.|+|++|++.+..|..|.++++|++|+|++|++++..|..++++++|++|+|+
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            47889999999999888899999999999999999998889999999999999999999998889999999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC  531 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc  531 (624)
                      +|++++..|..+.. +.+|+.|++++|....
T Consensus       114 ~n~i~~l~~~~~~~-l~~L~~L~L~~n~l~~  143 (606)
T 3t6q_A          114 QTGISSIDFIPLHN-QKTLESLYLGSNHISS  143 (606)
T ss_dssp             TSCCSCGGGSCCTT-CTTCCEEECCSSCCCC
T ss_pred             ccCcccCCcchhcc-CCcccEEECCCCcccc
Confidence            99998654555544 7788999999887443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.06  E-value=2.6e-10  Score=115.14  Aligned_cols=106  Identities=20%  Similarity=0.323  Sum_probs=67.1

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+++..+..|.++++|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..++.+++|+.|+|++
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  133 (276)
T 2z62_A           54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH  133 (276)
T ss_dssp             CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred             CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC
Confidence            55666666666655555666666666666666666655556666666666666666666655555566666666666666


Q ss_pred             CcCcc-cCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSG-RVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g-~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++++ .+|..+.. +.+|+.|++++|.
T Consensus       134 n~l~~~~l~~~~~~-l~~L~~L~Ls~N~  160 (276)
T 2z62_A          134 NLIQSFKLPEYFSN-LTNLEHLDLSSNK  160 (276)
T ss_dssp             SCCCCCCCCGGGGG-CTTCCEEECCSSC
T ss_pred             CccceecCchhhcc-CCCCCEEECCCCC
Confidence            66654 34655554 5666666666665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.06  E-value=6.1e-11  Score=134.50  Aligned_cols=107  Identities=12%  Similarity=0.230  Sum_probs=75.3

Q ss_pred             EEEEEEcCCCCCccC-----------------CCcccc--cccccccccCcCccccccCCCCcCCCccCCeEeccCCC-C
Q 006940          421 VIDGLGLDNQGLRGF-----------------LPNGIS--KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-F  480 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~-----------------~p~~~~--~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~-l  480 (624)
                      .++.|+|++|.|+|.                 +|..++  +|++|+.|+|++|++.|.+|..|++|++|+.|+|++|+ +
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence            366777777777775                 777777  77777777777777777777777777777777777776 7


Q ss_pred             CC-CCccccCCC------CCCCEEeccCCcCcccCCc--hhhhccCCCCEEeccCCCC
Q 006940          481 NG-SIPESLGQL------TALRRLNLNGNTLSGRVPA--ALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       481 ~g-~iP~~l~~l------~~L~~L~Ls~N~l~g~iP~--~~~~~l~~l~~l~l~~N~~  529 (624)
                      +| .+|..++.+      ++|+.|+|++|+++ .+|.  .+.. +.+|+.|++++|..
T Consensus       287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~-l~~L~~L~L~~N~l  342 (636)
T 4eco_A          287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK-MKKLGMLECLYNQL  342 (636)
T ss_dssp             CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT-CTTCCEEECCSCCC
T ss_pred             ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc-CCCCCEEeCcCCcC
Confidence            77 667666554      66666666666666 6666  5544 55666666666653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.06  E-value=5e-10  Score=107.08  Aligned_cols=102  Identities=28%  Similarity=0.402  Sum_probs=90.0

Q ss_pred             EEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCc
Q 006940          424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT  503 (624)
Q Consensus       424 ~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~  503 (624)
                      .+++++|+|+ .+|..+.  .+|+.|+|++|+++ .+|..|..+++|+.|+|++|.+++..|..+.++++|+.|+|++|+
T Consensus        14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            5899999988 5676553  68999999999998 788999999999999999999998888899999999999999999


Q ss_pred             CcccCCchhhhccCCCCEEeccCCCCC
Q 006940          504 LSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       504 l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +++..|..+.. +.+|+.|++++|...
T Consensus        90 l~~i~~~~f~~-l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           90 LRCIPPRTFDG-LKSLRLLSLHGNDIS  115 (193)
T ss_dssp             CCBCCTTTTTT-CTTCCEEECCSSCCC
T ss_pred             cCEeCHHHhCC-CCCCCEEECCCCCCC
Confidence            99766666655 789999999999854

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.05  E-value=2.3e-10  Score=119.51  Aligned_cols=103  Identities=24%  Similarity=0.322  Sum_probs=86.8

Q ss_pred             CCCCCcccccC-CC------CceeEEEEEEcCC-CCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEec
Q 006940          404 HPWSGADCQFD-RT------SHKWVIDGLGLDN-QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDL  475 (624)
Q Consensus       404 ~~w~gv~C~~~-~~------~~~~~l~~L~L~~-n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdL  475 (624)
                      |.|..+.|... ..      .....|+.|+|++ |.|++..+..|.+|++|+.|+|++|+|++..|..|.+|++|+.|+|
T Consensus         8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A            8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            46888888754 11      1123488999996 9999988899999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCccccCCCCCCCEEeccCCcCccc
Q 006940          476 SYNFFNGSIPESLGQLTALRRLNLNGNTLSGR  507 (624)
Q Consensus       476 s~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~  507 (624)
                      ++|+|++..|..+..++ |+.|+|.+|+|...
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            99999966556666666 99999999999853

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.05  E-value=6.1e-11  Score=122.22  Aligned_cols=110  Identities=18%  Similarity=0.157  Sum_probs=90.7

Q ss_pred             EEEEEEcCCCCCccCCCcccccc-----cccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCC--Ccccc--CCC
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS--IPESL--GQL  491 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L-----~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~--iP~~l--~~l  491 (624)
                      .++.|+|++|.+++. |..+..+     ++|+.|+|++|++++..|..|+.+++|+.|+|++|++.|.  +|..+  ..+
T Consensus       122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            488899999999988 8888877     8999999999999988888999999999999999998876  34455  888


Q ss_pred             CCCCEEeccCCcCcc--cCCchhhhccCCCCEEeccCCCCCC
Q 006940          492 TALRRLNLNGNTLSG--RVPAALGGRLLHRASFNFTDNAGLC  531 (624)
Q Consensus       492 ~~L~~L~Ls~N~l~g--~iP~~~~~~l~~l~~l~l~~N~~lc  531 (624)
                      ++|+.|+|++|++++  .++..+...+.+|+.|++++|....
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence            999999999999983  4444444446789999999997443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.03  E-value=3.4e-10  Score=126.31  Aligned_cols=101  Identities=27%  Similarity=0.332  Sum_probs=89.5

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCC-ccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~i-P~~l~~l~~L~~L~L  499 (624)
                      .|+.|+|++|.|+ .+|..|+.|++|+.|+|++|+|++ +| .++.|++|+.|+|++|+|++.+ |..++.+++|+.|+|
T Consensus       464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L  540 (567)
T 1dce_A          464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL  540 (567)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence            4889999999999 889999999999999999999997 77 8999999999999999999887 999999999999999


Q ss_pred             cCCcCcccCCch--hhhccCCCCEEec
Q 006940          500 NGNTLSGRVPAA--LGGRLLHRASFNF  524 (624)
Q Consensus       500 s~N~l~g~iP~~--~~~~l~~l~~l~l  524 (624)
                      ++|++++..|..  +...+++|+.|++
T Consensus       541 ~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          541 QGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999765532  2334678888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.03  E-value=1.6e-10  Score=108.59  Aligned_cols=101  Identities=19%  Similarity=0.165  Sum_probs=54.3

Q ss_pred             EEEEEcCCCCCccCCCccccccc-ccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLR-HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~-~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      ++.|+|++|+++. +| .+..+. +|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|..+..+++|+.|+|+
T Consensus        21 L~~L~l~~n~l~~-i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           21 DRELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             CEEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             ceEEEeeCCCCch-hH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            4556666666653 23 233333 566666666666543  455556666666666666653322333556666666666


Q ss_pred             CCcCcccCCc--hhhhccCCCCEEeccCCC
Q 006940          501 GNTLSGRVPA--ALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       501 ~N~l~g~iP~--~~~~~l~~l~~l~l~~N~  528 (624)
                      +|+++ .+|.  .+.. +.+|+.|++++|+
T Consensus        97 ~N~i~-~~~~~~~l~~-l~~L~~L~l~~N~  124 (176)
T 1a9n_A           97 NNSLV-ELGDLDPLAS-LKSLTYLCILRNP  124 (176)
T ss_dssp             SCCCC-CGGGGGGGGG-CTTCCEEECCSSG
T ss_pred             CCcCC-cchhhHhhhc-CCCCCEEEecCCC
Confidence            66663 4444  3332 4556666666665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.03  E-value=3.6e-10  Score=106.14  Aligned_cols=104  Identities=17%  Similarity=0.235  Sum_probs=89.5

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCcc--ccCCCCCCCEEe
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE--SLGQLTALRRLN  498 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~--~l~~l~~L~~L~  498 (624)
                      .++.|+|++|.|++.  ..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|.++ .+|.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            488999999999986  68999999999999999999654444589999999999999996 6776  889999999999


Q ss_pred             ccCCcCcccCCch---hhhccCCCCEEeccCCC
Q 006940          499 LNGNTLSGRVPAA---LGGRLLHRASFNFTDNA  528 (624)
Q Consensus       499 Ls~N~l~g~iP~~---~~~~l~~l~~l~l~~N~  528 (624)
                      |++|+++ .+|..   ....+++|+.|++++|.
T Consensus       120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            9999998 66775   23347889999998885

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.03  E-value=4.6e-11  Score=137.38  Aligned_cols=107  Identities=26%  Similarity=0.407  Sum_probs=91.8

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .|+.|+|++|.|+ .+|..|++|++|+.|+|++|+|+ .+|..|+.|++|+.|+|++|.|+ .+|..++.|++|+.|+|+
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            4788999999999 89999999999999999999999 88999999999999999999998 899999999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +|+|+|.+|..+......+..+++.+|...
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~  354 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPE  354 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCccc
Confidence            999999999877542111223445555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.02  E-value=5.2e-10  Score=125.86  Aligned_cols=104  Identities=18%  Similarity=0.183  Sum_probs=77.4

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .|+.|+|++|.|++..|..|++|++|+.|+|++|.+++..+..|+++++|+.|+|++|.+++..|..++.+++|+.|+|+
T Consensus       100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence            37778888888888777777888888888888888885555556788888888888888887777778888888888888


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      +|.+++. |.  . .+.+|..|++++|.
T Consensus       180 ~N~l~~~-~~--~-~l~~L~~L~l~~n~  203 (597)
T 3oja_B          180 SNRLTHV-DL--S-LIPSLFHANVSYNL  203 (597)
T ss_dssp             TSCCSBC-CG--G-GCTTCSEEECCSSC
T ss_pred             CCCCCCc-Ch--h-hhhhhhhhhcccCc
Confidence            8888753 32  1 24556666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.02  E-value=3.2e-10  Score=108.61  Aligned_cols=104  Identities=17%  Similarity=0.217  Sum_probs=87.1

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+++..+..+..|++|+.|+|++|++++..|..+..+++|+.|+|++|.+.+.+| .+..+++|+.|+|+
T Consensus        89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~  167 (197)
T 4ezg_A           89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ  167 (197)
T ss_dssp             TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred             CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence            47889999999998888889999999999999999998888888999999999999998444676 68889999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      +|++++ ++ .+.. +++|+.|++++|+
T Consensus       168 ~n~i~~-~~-~l~~-l~~L~~L~l~~N~  192 (197)
T 4ezg_A          168 FDGVHD-YR-GIED-FPKLNQLYAFSQT  192 (197)
T ss_dssp             TBCCCC-CT-TGGG-CSSCCEEEECBC-
T ss_pred             CCCCcC-hH-Hhcc-CCCCCEEEeeCcc
Confidence            999985 44 4444 6789999999887

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.01  E-value=2.4e-10  Score=126.10  Aligned_cols=103  Identities=20%  Similarity=0.202  Sum_probs=58.7

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+++..|..|.+|++|+.|+|++|++++..|..|.++++|++|||++|+++ .+|..  .+++|++|+|++
T Consensus        23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~   99 (520)
T 2z7x_B           23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSF   99 (520)
T ss_dssp             CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCS
T ss_pred             ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccC
Confidence            455666666666555555666666666666666666555555666666666666666655 45544  555666666666


Q ss_pred             CcCcc-cCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSG-RVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g-~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++++ .+|..+.. +.+|+.|++++|.
T Consensus       100 N~l~~~~~p~~~~~-l~~L~~L~L~~n~  126 (520)
T 2z7x_B          100 NAFDALPICKEFGN-MSQLKFLGLSTTH  126 (520)
T ss_dssp             SCCSSCCCCGGGGG-CTTCCEEEEEESS
T ss_pred             Cccccccchhhhcc-CCcceEEEecCcc
Confidence            66554 34555443 4455555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.01  E-value=5.4e-10  Score=120.75  Aligned_cols=121  Identities=21%  Similarity=0.227  Sum_probs=85.5

Q ss_pred             CCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCC
Q 006940          406 WSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF  480 (624)
Q Consensus       406 w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l  480 (624)
                      |..+.|......     ....++.|+|++|+|++..+..|.+|++|+.|+|++|++++..+..|.++++|+.|+|++|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            556777532211     112467788888888888888888888888888888888877777888888888888888888


Q ss_pred             CCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCC
Q 006940          481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN  527 (624)
Q Consensus       481 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N  527 (624)
                      ++..+..+..+++|+.|+|++|+++...+..+. .+.+|+.|++++|
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~l~~~  170 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-RIPSLRRLDLGEL  170 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-TCTTCCEEECCCC
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhh-hCcccCEeCCCCC
Confidence            865556788888888888888888743332332 2445555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.01  E-value=5.1e-10  Score=124.91  Aligned_cols=107  Identities=28%  Similarity=0.372  Sum_probs=68.4

Q ss_pred             EEEEEcCCCCCccCCCcc-cccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          422 IDGLGLDNQGLRGFLPNG-ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~-~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      ++.|+|++|.+++.+|.. +..+++|+.|+|++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus       405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~  481 (562)
T 3a79_B          405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA  481 (562)
T ss_dssp             CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECC
T ss_pred             CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECC
Confidence            556666666666645543 55666666666666666666555443  56777777777776 666666677777777777


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCG  532 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~  532 (624)
                      +|+++ .+|......+.+|+.+++++|++.|.
T Consensus       482 ~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          482 SNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             SSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            77777 56655222356677777777776665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.01  E-value=5.9e-10  Score=127.13  Aligned_cols=114  Identities=20%  Similarity=0.280  Sum_probs=87.1

Q ss_pred             EEEEEEcCCCCCccCC----C----cccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCC
Q 006940          421 VIDGLGLDNQGLRGFL----P----NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT  492 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~----p----~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~  492 (624)
                      .++.|+|++|.+++..    |    ..+.++++|+.|+|++|+++...+..|..+++|+.|+|++|++++..+..+.+++
T Consensus       505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  584 (680)
T 1ziw_A          505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV  584 (680)
T ss_dssp             TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence            3667777777776531    1    2367778888888888888743334688899999999999999866666678899


Q ss_pred             CCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940          493 ALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  534 (624)
Q Consensus       493 ~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~  534 (624)
                      +|+.|+|++|++++..|..+...+.+|+.+++++|++.|.|+
T Consensus       585 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            999999999999976665554246789999999999999864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.01  E-value=4.5e-10  Score=123.84  Aligned_cols=103  Identities=21%  Similarity=0.295  Sum_probs=58.6

Q ss_pred             EEEEEcCCCCCcc--CCCcccccccccccccCcCccccccCCCC-cCCCccCCeEeccCCCCCCCCccccCCCCCCCEEe
Q 006940          422 IDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN  498 (624)
Q Consensus       422 l~~L~L~~n~l~g--~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~  498 (624)
                      ++.|+|++|.+++  .+|..+..+++|+.|+|++|++++.+|.. +..+++|+.|+|++|++++.+|..+.  ++|+.|+
T Consensus       350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~  427 (520)
T 2z7x_B          350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLD  427 (520)
T ss_dssp             CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEE
T ss_pred             CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEE
Confidence            5556666666665  44555666666666666666666544432 55555666666666666555554443  4555556


Q ss_pred             ccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          499 LNGNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       499 Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++|+++ .+|..+.. +.+|+.|++++|+
T Consensus       428 Ls~N~l~-~ip~~~~~-l~~L~~L~L~~N~  455 (520)
T 2z7x_B          428 LHSNKIK-SIPKQVVK-LEALQELNVASNQ  455 (520)
T ss_dssp             CCSSCCC-CCCGGGGG-CTTCCEEECCSSC
T ss_pred             CCCCccc-ccchhhhc-CCCCCEEECCCCc
Confidence            6655555 55555542 4555555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.00  E-value=5.3e-10  Score=124.72  Aligned_cols=105  Identities=25%  Similarity=0.238  Sum_probs=91.7

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+++..|..|.++++|+.|+|++|++++..|..|..+++|++|||++|+++ .+|..  .+++|++|+|+
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence            4788999999999888889999999999999999999888889999999999999999998 77776  88999999999


Q ss_pred             CCcCcc-cCCchhhhccCCCCEEeccCCCC
Q 006940          501 GNTLSG-RVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       501 ~N~l~g-~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      +|++++ .+|..+.. +.+|+.|++++|..
T Consensus       130 ~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l  158 (562)
T 3a79_B          130 FNDFDVLPVCKEFGN-LTKLTFLGLSAAKF  158 (562)
T ss_dssp             SSCCSBCCCCGGGGG-CTTCCEEEEECSBC
T ss_pred             CCCccccCchHhhcc-cCcccEEecCCCcc
Confidence            999986 45677765 77888999888864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.00  E-value=1.3e-10  Score=135.58  Aligned_cols=107  Identities=16%  Similarity=0.254  Sum_probs=82.9

Q ss_pred             EEEEEEcCCCCCcc-----------------CCCcccc--cccccccccCcCccccccCCCCcCCCccCCeEeccCCC-C
Q 006940          421 VIDGLGLDNQGLRG-----------------FLPNGIS--KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-F  480 (624)
Q Consensus       421 ~l~~L~L~~n~l~g-----------------~~p~~~~--~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~-l  480 (624)
                      .|+.|+|++|.|+|                 .+|..++  +|++|+.|+|++|++.|.+|..|++|++|+.|+|++|+ +
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l  528 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI  528 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence            47778888888888                 3788877  88888888888888888888888888888888888887 8


Q ss_pred             CC-CCccccCCCC-------CCCEEeccCCcCcccCCc--hhhhccCCCCEEeccCCCC
Q 006940          481 NG-SIPESLGQLT-------ALRRLNLNGNTLSGRVPA--ALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       481 ~g-~iP~~l~~l~-------~L~~L~Ls~N~l~g~iP~--~~~~~l~~l~~l~l~~N~~  529 (624)
                      +| .+|..++.++       +|+.|+|++|+++ .+|.  .+.. +.+|+.|++++|..
T Consensus       529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~-L~~L~~L~Ls~N~l  585 (876)
T 4ecn_A          529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK-MVKLGLLDCVHNKV  585 (876)
T ss_dssp             CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT-CTTCCEEECTTSCC
T ss_pred             ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc-CCCCCEEECCCCCc
Confidence            87 7776655544       7888888888887 7777  6654 66777777777764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.00  E-value=2.6e-10  Score=125.15  Aligned_cols=107  Identities=21%  Similarity=0.190  Sum_probs=91.1

Q ss_pred             EEEEEEcCCCCCccCCCcccc-cccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L  499 (624)
                      .|+.|+|++|.|++..|..+. .|++|+.|+|++|.+++. | .+..+++|+.|+|++|.+++. |..+..+++|+.|+|
T Consensus       145 ~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L  221 (487)
T 3oja_A          145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISL  221 (487)
T ss_dssp             SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEEC
T ss_pred             CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEe
Confidence            488999999999998888886 799999999999999976 3 344699999999999999964 445889999999999


Q ss_pred             cCCcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940          500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCG  532 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~  532 (624)
                      ++|.+++ +|..+.. +.+|+.|++++|+..|+
T Consensus       222 s~N~l~~-lp~~l~~-l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          222 RNNKLVL-IEKALRF-SQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             TTSCCCE-ECTTCCC-CTTCCEEECTTCCBCHH
T ss_pred             cCCcCcc-cchhhcc-CCCCCEEEcCCCCCcCc
Confidence            9999995 7877654 67899999999998874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.99  E-value=9e-10  Score=116.91  Aligned_cols=104  Identities=18%  Similarity=0.183  Sum_probs=83.8

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+.+..|..|.++++|+.|+|++|+++...+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|+
T Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A           94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred             CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence            47889999999998888888999999999999999984444446889999999999999998778888999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      +|++++. +.  . .+.+|+.+++++|.
T Consensus       174 ~n~l~~~-~~--~-~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          174 SNRLTHV-DL--S-LIPSLFHANVSYNL  197 (390)
T ss_dssp             SSCCSBC-CG--G-GCTTCSEEECCSSC
T ss_pred             CCcCCcc-cc--c-cccccceeeccccc
Confidence            9999854 32  2 24556666666664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.99  E-value=7.6e-10  Score=126.23  Aligned_cols=106  Identities=20%  Similarity=0.248  Sum_probs=50.4

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|++++..+..|.++++|+.|+|++|.+++..|..+++|++|+.|+|++|.+++..+..++++++|++|+|++
T Consensus        27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~  106 (680)
T 1ziw_A           27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS  106 (680)
T ss_dssp             CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence            44555555555554444455555555555555555544444444555555555555555432223344455555555555


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++++..|..+.. +.+|+.|++++|.
T Consensus       107 n~l~~~~~~~~~~-l~~L~~L~Ls~n~  132 (680)
T 1ziw_A          107 NSIQKIKNNPFVK-QKNLITLDLSHNG  132 (680)
T ss_dssp             SCCCCCCSCTTTT-CTTCCEEECCSSC
T ss_pred             CccCccChhHccc-cCCCCEEECCCCc
Confidence            5444333333332 3444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.99  E-value=9.8e-10  Score=114.00  Aligned_cols=122  Identities=20%  Similarity=0.221  Sum_probs=97.9

Q ss_pred             CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC
Q 006940          404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (624)
Q Consensus       404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N  478 (624)
                      |.|..+.|......     ....++.|+|++|.+.+..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            46788888643211     1124788999999999888889999999999999999999888999999999999999999


Q ss_pred             CCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      .++ .+|..+.  ++|+.|+|++|++++ +|......+.+|+.|++++|..
T Consensus       113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          113 HLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             CCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCC
T ss_pred             cCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCcc
Confidence            998 7777655  789999999999984 4444333477888888888864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.98  E-value=5.9e-10  Score=130.59  Aligned_cols=106  Identities=22%  Similarity=0.281  Sum_probs=61.6

Q ss_pred             EEEEEcCCCCCccCC-CcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccc--cCCCCCCCEEe
Q 006940          422 IDGLGLDNQGLRGFL-PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES--LGQLTALRRLN  498 (624)
Q Consensus       422 l~~L~L~~n~l~g~~-p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~--l~~l~~L~~L~  498 (624)
                      |+.|+|++|.+.+.+ |..|.+|++|+.|+|++|++++..|..|.+|++|+.|+|++|.+++.+|..  +.++++|++|+
T Consensus        50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~  129 (844)
T 3j0a_A           50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD  129 (844)
T ss_dssp             CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred             CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence            445555555444444 445566666666666666666555666666666666666666666555543  56666666666


Q ss_pred             ccCCcCcccCCc-hhhhccCCCCEEeccCCC
Q 006940          499 LNGNTLSGRVPA-ALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       499 Ls~N~l~g~iP~-~~~~~l~~l~~l~l~~N~  528 (624)
                      |++|.+++..|. .+. .+.+|+.|++++|.
T Consensus       130 Ls~N~l~~~~~~~~~~-~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          130 LSKNQIRSLYLHPSFG-KLNSLKSIDFSSNQ  159 (844)
T ss_dssp             EESCCCCCCCCCGGGG-TCSSCCEEEEESSC
T ss_pred             CCCCcccccccchhHh-hCCCCCEEECCCCc
Confidence            666666554442 333 25566666666665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.98  E-value=1.1e-09  Score=113.39  Aligned_cols=121  Identities=20%  Similarity=0.253  Sum_probs=88.5

Q ss_pred             CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC
Q 006940          404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN  478 (624)
Q Consensus       404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N  478 (624)
                      |.|..+.|......     ....++.|+|++|++++..+..|.++++|+.|+|++|++++..|..+..+++|+.|+|++|
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            46777777632211     1124788999999999888888999999999999999999888999999999999999999


Q ss_pred             CCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       479 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      .++ .+|..+.  ++|+.|++++|++++..+..+.. +.+|+.|++++|.
T Consensus       111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~  156 (330)
T 1xku_A          111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNP  156 (330)
T ss_dssp             CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTT-CTTCCEEECCSSC
T ss_pred             cCC-ccChhhc--ccccEEECCCCcccccCHhHhcC-CccccEEECCCCc
Confidence            988 6665543  56777777777766433333332 4556666665554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.97  E-value=2e-10  Score=118.25  Aligned_cols=110  Identities=19%  Similarity=0.141  Sum_probs=80.1

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccC--CCCc--CCCccCCeEeccCCCCCC--CCc-cccCCCCC
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI--PSSL--GTIASLEVLDLSYNFFNG--SIP-ESLGQLTA  493 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~i--p~~l--~~l~~L~~LdLs~N~l~g--~iP-~~l~~l~~  493 (624)
                      .++.|+|++|.+.+..|..|+++++|+.|+|++|++.|.+  |..+  ..+++|+.|+|++|++++  .++ ..+..+++
T Consensus       150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~  229 (312)
T 1wwl_A          150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ  229 (312)
T ss_dssp             TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC
T ss_pred             CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC
Confidence            4777888888888877788888888888888888877652  3333  778888888888888873  222 33456788


Q ss_pred             CCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          494 LRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       494 L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      |+.|+|++|++++.+|......+.+|+.|++++|...
T Consensus       230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            8888888888887665433333577888888888743

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.97  E-value=7.5e-10  Score=103.95  Aligned_cols=89  Identities=19%  Similarity=0.279  Sum_probs=80.5

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.|++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            37889999999998777778999999999999999998777778999999999999999996666667899999999999


Q ss_pred             CCcCcccCC
Q 006940          501 GNTLSGRVP  509 (624)
Q Consensus       501 ~N~l~g~iP  509 (624)
                      +|++++..|
T Consensus       133 ~N~~~~~~~  141 (177)
T 2o6r_A          133 TNPWDCSCP  141 (177)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCeeccCc
Confidence            999998766

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.96  E-value=6.9e-10  Score=115.17  Aligned_cols=110  Identities=19%  Similarity=0.225  Sum_probs=93.1

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence            3777999999999888889999999999999999999888888999999999999999998 889889999999999999


Q ss_pred             CCcCcccCCchhhhc-----cCCCCEEeccCCCCCC
Q 006940          501 GNTLSGRVPAALGGR-----LLHRASFNFTDNAGLC  531 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~-----l~~l~~l~l~~N~~lc  531 (624)
                      +|++++..+..+...     ...++.+++.+|+..+
T Consensus       273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~  308 (332)
T 2ft3_A          273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY  308 (332)
T ss_dssp             SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred             CCCCCccChhHccccccccccccccceEeecCcccc
Confidence            999985544444322     3457889999998763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.96  E-value=1.2e-09  Score=113.26  Aligned_cols=109  Identities=20%  Similarity=0.220  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+++..|..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++
T Consensus       194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN  272 (330)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCC
Confidence            788999999999988999999999999999999999888888999999999999999999 8999999999999999999


Q ss_pred             CcCcccCCchhhh-----ccCCCCEEeccCCCCCC
Q 006940          502 NTLSGRVPAALGG-----RLLHRASFNFTDNAGLC  531 (624)
Q Consensus       502 N~l~g~iP~~~~~-----~l~~l~~l~l~~N~~lc  531 (624)
                      |++++.-+..+..     ....+..+++.+|+..+
T Consensus       273 N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            9999544433322     13567889999999755

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.96  E-value=1.4e-09  Score=121.12  Aligned_cols=106  Identities=21%  Similarity=0.305  Sum_probs=56.0

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCC-CCccccCCCCCCCEEecc
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNLN  500 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g-~iP~~l~~l~~L~~L~Ls  500 (624)
                      ++.|+|++|.+++..|..|.++++|+.|+|++|++++..+..+++|++|++|+|++|.+++ .+|..++++++|+.|+++
T Consensus        78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~  157 (570)
T 2z63_A           78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (570)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred             CCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence            4555555555555555555555555555555555554333345555555555555555554 345555555555555555


Q ss_pred             CCcCcccCCchhhhccCCC----CEEeccCCC
Q 006940          501 GNTLSGRVPAALGGRLLHR----ASFNFTDNA  528 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l----~~l~l~~N~  528 (624)
                      +|++++..|..+.. +.+|    ..+++++|.
T Consensus       158 ~n~l~~~~~~~~~~-l~~L~~~~~~L~l~~n~  188 (570)
T 2z63_A          158 SNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNP  188 (570)
T ss_dssp             TSCCCEECGGGGHH-HHTCTTCCCEEECTTCC
T ss_pred             CCccceecHHHccc-hhccchhhhhcccCCCC
Confidence            55555444443333 3333    455555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.95  E-value=1e-09  Score=123.43  Aligned_cols=107  Identities=16%  Similarity=0.165  Sum_probs=79.6

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      |+.|+|++|.|.+..|..|..+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++..+..++++++|+.|+|++
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~  156 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN  156 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence            56677777777777777777888888888888888777777777788888888888887744444567778888888888


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      |.+++..|..+.. +.+|+.|++++|..
T Consensus       157 N~l~~~~~~~~~~-l~~L~~L~L~~N~l  183 (597)
T 3oja_B          157 NNLERIEDDTFQA-TTSLQNLQLSSNRL  183 (597)
T ss_dssp             SCCCBCCTTTTTT-CTTCCEEECTTSCC
T ss_pred             CcCCCCChhhhhc-CCcCcEEECcCCCC
Confidence            8887666665554 67778888877763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.93  E-value=1.5e-09  Score=118.99  Aligned_cols=106  Identities=19%  Similarity=0.170  Sum_probs=93.4

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcC-CCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L  499 (624)
                      .++.|+|++|.|++..|..++.+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++. |. +..+++|+.|+|
T Consensus       121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L  198 (487)
T 3oja_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDL  198 (487)
T ss_dssp             SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEEC
Confidence            388999999999999999999999999999999999998888886 799999999999999966 33 446999999999


Q ss_pred             cCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      ++|.+++ +|+.+.. +.+|+.|++++|...
T Consensus       199 s~N~l~~-~~~~~~~-l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          199 SSNKLAF-MGPEFQS-AAGVTWISLRNNKLV  227 (487)
T ss_dssp             CSSCCCE-ECGGGGG-GTTCSEEECTTSCCC
T ss_pred             CCCCCCC-CCHhHcC-CCCccEEEecCCcCc
Confidence            9999996 4555654 788999999999743

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.92  E-value=5.9e-10  Score=109.99  Aligned_cols=108  Identities=19%  Similarity=0.228  Sum_probs=89.9

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCcc-ccccCCCCcCCCccCCeEeccC-CCCCCCCccccCCCCCCCEEe
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTIASLEVLDLSY-NFFNGSIPESLGQLTALRRLN  498 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~g~ip~~l~~l~~L~~LdLs~-N~l~g~iP~~l~~l~~L~~L~  498 (624)
                      .++.|+|++|++++..+..|.++++|+.|+|++|+ ++...+..|..+++|+.|+|++ |++++..+..+.++++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            47889999999998877789999999999999997 8866666889999999999998 999966667888999999999


Q ss_pred             ccCCcCcccCCchhhhccCCCC---EEeccCCCCCC
Q 006940          499 LNGNTLSGRVPAALGGRLLHRA---SFNFTDNAGLC  531 (624)
Q Consensus       499 Ls~N~l~g~iP~~~~~~l~~l~---~l~l~~N~~lc  531 (624)
                      |++|++++ +|. +.. +.+|+   .|++++|+.+.
T Consensus       112 l~~n~l~~-lp~-~~~-l~~L~~L~~L~l~~N~~l~  144 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTK-VYSTDIFFILEITDNPYMT  144 (239)
T ss_dssp             EEEECCCS-CCC-CTT-CCBCCSEEEEEEESCTTCC
T ss_pred             CCCCCCcc-ccc-ccc-ccccccccEEECCCCcchh
Confidence            99999985 776 443 66677   88898884343

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.92  E-value=1e-09  Score=113.29  Aligned_cols=107  Identities=21%  Similarity=0.209  Sum_probs=77.9

Q ss_pred             EEEEEEcCCCCCccCCCcccc-cccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L  499 (624)
                      .++.|+|++|.+++..+..+. .+++|+.|+|++|.+++. | ....+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus       145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L  221 (317)
T 3o53_A          145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL  221 (317)
T ss_dssp             SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred             CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEEC
Confidence            377788888888877666663 678888888888888754 3 23347788888888888874 4445777888888888


Q ss_pred             cCCcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940          500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCG  532 (624)
Q Consensus       500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~  532 (624)
                      ++|+++ .+|..+.. +.+|+.|++++|+..|+
T Consensus       222 ~~N~l~-~l~~~~~~-l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          222 RNNKLV-LIEKALRF-SQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             TTSCCC-EECTTCCC-CTTCCEEECTTCCCBHH
T ss_pred             cCCccc-chhhHhhc-CCCCCEEEccCCCccCc
Confidence            888887 56766544 56788888888876653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.92  E-value=7.7e-10  Score=113.76  Aligned_cols=110  Identities=16%  Similarity=0.105  Sum_probs=89.3

Q ss_pred             EEEEEEcCCCCCccCCC----cccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCC--Cc--cccCCCC
Q 006940          421 VIDGLGLDNQGLRGFLP----NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS--IP--ESLGQLT  492 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p----~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~--iP--~~l~~l~  492 (624)
                      .++.|+|++|.+.+..+    ..+..+++|+.|+|++|++.+..|..+..+++|+.|+|++|++.+.  ++  ..++.++
T Consensus       118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~  197 (310)
T 4glp_A          118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP  197 (310)
T ss_dssp             CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred             CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence            47889999999998766    3556799999999999999988889999999999999999998753  32  3347889


Q ss_pred             CCCEEeccCCcCcccCCc---hhhhccCCCCEEeccCCCCCC
Q 006940          493 ALRRLNLNGNTLSGRVPA---ALGGRLLHRASFNFTDNAGLC  531 (624)
Q Consensus       493 ~L~~L~Ls~N~l~g~iP~---~~~~~l~~l~~l~l~~N~~lc  531 (624)
                      +|++|+|++|+++ .+|.   .+...+.+|+.|++++|....
T Consensus       198 ~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~  238 (310)
T 4glp_A          198 AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRA  238 (310)
T ss_dssp             CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred             CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence            9999999999997 3333   233346889999999998543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.90  E-value=7.1e-10  Score=123.01  Aligned_cols=107  Identities=18%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCC-CCccccCCCCCCCEEecc
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNLN  500 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g-~iP~~l~~l~~L~~L~Ls  500 (624)
                      ++.|+|++|.+++..|..|.+|++|+.|+|++|++++..|..|+.+++|++|+|++|.+++ .+|..++++++|+.|+|+
T Consensus        52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~  131 (549)
T 2z81_A           52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG  131 (549)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred             ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence            4445555555555444455555555555555555554444445555555555555555543 234444555555555555


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      +|++.+.+|......+.+|+.|++++|.
T Consensus       132 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A          132 NVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             ESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCccccccCHhhhhcccccCeeeccCCc
Confidence            5543334432211123444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.86  E-value=1.8e-09  Score=106.48  Aligned_cols=104  Identities=14%  Similarity=0.223  Sum_probs=51.7

Q ss_pred             EEEEEcCCCC-CccCCCcccccccccccccCcC-ccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCC---E
Q 006940          422 IDGLGLDNQG-LRGFLPNGISKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR---R  496 (624)
Q Consensus       422 l~~L~L~~n~-l~g~~p~~~~~L~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~---~  496 (624)
                      ++.|+|++|. ++...+..|.++++|+.|+|++ |++++..+..|..+++|+.|+|++|.+++ +|. +..+++|+   .
T Consensus        57 L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~  134 (239)
T 2xwt_C           57 ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFI  134 (239)
T ss_dssp             CCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEE
T ss_pred             CcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccE
Confidence            4455555554 4444444555555555555555 55554444455555555555555555553 444 44555554   5


Q ss_pred             EeccCC-cCcccCCchhhhccCCCC-EEeccCCC
Q 006940          497 LNLNGN-TLSGRVPAALGGRLLHRA-SFNFTDNA  528 (624)
Q Consensus       497 L~Ls~N-~l~g~iP~~~~~~l~~l~-~l~l~~N~  528 (624)
                      |+|++| ++++..+..+. .+.+|+ .|++++|.
T Consensus       135 L~l~~N~~l~~i~~~~~~-~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          135 LEITDNPYMTSIPVNAFQ-GLCNETLTLKLYNNG  167 (239)
T ss_dssp             EEEESCTTCCEECTTTTT-TTBSSEEEEECCSCC
T ss_pred             EECCCCcchhhcCccccc-chhcceeEEEcCCCC
Confidence            555555 55422222222 244455 55555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.85  E-value=7e-10  Score=114.08  Aligned_cols=104  Identities=22%  Similarity=0.219  Sum_probs=76.3

Q ss_pred             EEEEEEcCCCCCccC--CC--cccccccccccccCcCccccccCCC----CcCCCccCCeEeccCCCCCCCCccccCCC-
Q 006940          421 VIDGLGLDNQGLRGF--LP--NGISKLRHLQSINLSGNSIRGAIPS----SLGTIASLEVLDLSYNFFNGSIPESLGQL-  491 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~--~p--~~~~~L~~L~~L~Ls~N~l~g~ip~----~l~~l~~L~~LdLs~N~l~g~iP~~l~~l-  491 (624)
                      .++.|+|++|.+.+.  ++  ..+..+++|+.|+|++|+++ .++.    .+..+++|++|||++|++++.+|..+..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            377788888887653  22  23467788888888888886 2232    24667888888888888888778777766 


Q ss_pred             --CCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          492 --TALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       492 --~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                        ++|+.|+|++|+++ .+|..+.   .+|+.|++++|+.
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l  284 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRL  284 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCC
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcC
Confidence              58888888888888 7777653   5788888888873

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.85  E-value=2.8e-09  Score=113.08  Aligned_cols=106  Identities=18%  Similarity=0.226  Sum_probs=79.2

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCcc-ccCCCCCCCEEecc
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLN  500 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~-~l~~l~~L~~L~Ls  500 (624)
                      ++.|+|++|.+.+..+..|..+++|+.|+|++|.+++..|..++.+++|+.|+|++|.++ .+|. .+.++++|++|+|+
T Consensus        71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECC
Confidence            667778888887776777788888888888888888777777788888888888888887 4444 45778888888888


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      +|++++..|..+.. +.+|+.|++++|..
T Consensus       150 ~n~l~~~~~~~~~~-l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          150 NNNLERIEDDTFQA-TTSLQNLQLSSNRL  177 (390)
T ss_dssp             SSCCCBCCTTTTSS-CTTCCEEECCSSCC
T ss_pred             CCccCccChhhccC-CCCCCEEECCCCcC
Confidence            88887655555544 67788888887763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.82  E-value=2.5e-09  Score=111.96  Aligned_cols=105  Identities=18%  Similarity=0.268  Sum_probs=52.7

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCC--CcCCCccCCeEeccCCC-CCCCCccccCCCCCCCEEe
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS--SLGTIASLEVLDLSYNF-FNGSIPESLGQLTALRRLN  498 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~--~l~~l~~L~~LdLs~N~-l~g~iP~~l~~l~~L~~L~  498 (624)
                      ++.|+|++|.+++..+..+.++++|+.|+|++|++++ +|.  .+..+++|+.|+|++|+ +++..|..+.++++|+.|+
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  180 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE  180 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence            4455555555554333335555555555555555552 332  45555555555555552 3333344455555555555


Q ss_pred             ccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          499 LNGNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       499 Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++|++++..|..+.. +.+|+.|++++|.
T Consensus       181 l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~  209 (353)
T 2z80_A          181 IDASDLQSYEPKSLKS-IQNVSHLILHMKQ  209 (353)
T ss_dssp             EEETTCCEECTTTTTT-CSEEEEEEEECSC
T ss_pred             CCCCCcCccCHHHHhc-cccCCeecCCCCc
Confidence            5555555544444443 4445555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.81  E-value=4.8e-09  Score=108.14  Aligned_cols=105  Identities=19%  Similarity=0.182  Sum_probs=91.4

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcC-CCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      ++.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+. .+++|+.|+|++|.+++. |. ...+++|+.|+|+
T Consensus       122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls  199 (317)
T 3o53_A          122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS  199 (317)
T ss_dssp             CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred             CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECC
Confidence            78899999999998888999999999999999999988777774 799999999999999854 43 3458999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +|++++ +|..+.. +.+|+.|++++|...
T Consensus       200 ~N~l~~-l~~~~~~-l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          200 SNKLAF-MGPEFQS-AAGVTWISLRNNKLV  227 (317)
T ss_dssp             SSCCCE-ECGGGGG-GTTCSEEECTTSCCC
T ss_pred             CCcCCc-chhhhcc-cCcccEEECcCCccc
Confidence            999995 5666655 789999999999754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.81  E-value=2.5e-09  Score=119.14  Aligned_cols=90  Identities=24%  Similarity=0.336  Sum_probs=59.7

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.|+ .+|   ..+++|+.|+|++|+|++ +|. +..  +|+.|+|++|.|++ +|.   .+++|+.|+|++
T Consensus        82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~  149 (571)
T 3cvr_A           82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADN  149 (571)
T ss_dssp             CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred             CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCC
Confidence            556666666666 455   345677777777777775 665 544  77777777777775 665   567777888888


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++++ +|.    .+.+|+.|++++|.
T Consensus       150 N~l~~-lp~----~l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          150 NQLTM-LPE----LPTSLEVLSVRNNQ  171 (571)
T ss_dssp             SCCSC-CCC----CCTTCCEEECCSSC
T ss_pred             CccCc-CCC----cCCCcCEEECCCCC
Confidence            87775 665    24556666666665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.76  E-value=9.6e-09  Score=104.69  Aligned_cols=99  Identities=29%  Similarity=0.487  Sum_probs=69.5

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+++.  +.+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++..|  +..+++|+.|+|++
T Consensus       114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK  187 (291)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence            66677777777763  4577777777777777777754  467777777777777777775444  77777777777777


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      |++++ +|. +.. +.+|+.|++++|+.
T Consensus       188 N~i~~-l~~-l~~-l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          188 NHISD-LRA-LAG-LKNLDVLELFSQEC  212 (291)
T ss_dssp             SCCCB-CGG-GTT-CTTCSEEEEEEEEE
T ss_pred             CcCCC-Chh-hcc-CCCCCEEECcCCcc
Confidence            77774 443 433 66777777777763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.74  E-value=2.9e-08  Score=99.61  Aligned_cols=100  Identities=22%  Similarity=0.303  Sum_probs=76.7

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.|++..+  +..|++|+.|+|++|++++ +|.. .. ++|+.|+|++|++++ +| .+..+++|+.|+|+
T Consensus        64 ~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls  136 (263)
T 1xeu_A           64 NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIR  136 (263)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECT
T ss_pred             CCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECC
Confidence            37789999999887544  8889999999999999885 4433 23 888888888888885 44 57888888888888


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +|++++ +| .+.. +.+|+.|++++|+..
T Consensus       137 ~N~i~~-~~-~l~~-l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A          137 NNKLKS-IV-MLGF-LSKLEVLDLHGNEIT  163 (263)
T ss_dssp             TSCCCB-CG-GGGG-CTTCCEEECTTSCCC
T ss_pred             CCcCCC-Ch-HHcc-CCCCCEEECCCCcCc
Confidence            888885 44 3443 678888888888743

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.73  E-value=1.8e-08  Score=113.14  Aligned_cols=101  Identities=30%  Similarity=0.485  Sum_probs=80.1

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .|+.|+|++|.|.+.  +.+..|++|+.|+|++|.+++.  ..+..|++|+.|+|++|.|++..|  +..+++|+.|+|+
T Consensus       110 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          110 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS  183 (605)
T ss_dssp             TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence            477888888888863  4588888888888888888864  578888889999999998887666  8888889999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +|++++ +| .+.. +.+|+.|++++|+..
T Consensus       184 ~N~i~~-l~-~l~~-l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          184 KNHISD-LR-ALAG-LKNLDVLELFSQECL  210 (605)
T ss_dssp             SSCCCB-CG-GGTT-CTTCSEEECCSEEEE
T ss_pred             CCCCCC-Ch-HHcc-CCCCCEEEccCCcCc
Confidence            998885 44 3444 678888998888743

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.73  E-value=1.9e-08  Score=102.51  Aligned_cols=98  Identities=30%  Similarity=0.413  Sum_probs=56.3

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+++  .+.+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++
T Consensus        92 L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~  165 (291)
T 1h6t_A           92 LGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED  165 (291)
T ss_dssp             CCEEECCSSCCCC--GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             CCEEECCCCcCCC--ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccC
Confidence            5556666665554  12355566666666666666542  2455666666666666666643  3456666666666666


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++++..|  +.. +.+|+.|++++|.
T Consensus       166 N~l~~~~~--l~~-l~~L~~L~L~~N~  189 (291)
T 1h6t_A          166 NQISDIVP--LAG-LTKLQNLYLSKNH  189 (291)
T ss_dssp             SCCCCCGG--GTT-CTTCCEEECCSSC
T ss_pred             Cccccchh--hcC-CCccCEEECCCCc
Confidence            66664333  332 5566666666665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.72  E-value=1.1e-08  Score=106.35  Aligned_cols=100  Identities=26%  Similarity=0.373  Sum_probs=52.5

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+++.  +.+..+++|+.|+|++|.+++.  +.+..+++|+.|+|++|.+++..|..+..+++|+.|+|++
T Consensus       245 L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  320 (347)
T 4fmz_A          245 LTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ  320 (347)
T ss_dssp             CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred             CCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence            44555555555542  3455555555555555555532  2355555555555555555555555555555555555555


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++++..|  +.. +..|+.|++++|+
T Consensus       321 n~l~~~~~--~~~-l~~L~~L~l~~N~  344 (347)
T 4fmz_A          321 NHITDIRP--LAS-LSKMDSADFANQV  344 (347)
T ss_dssp             SSCCCCGG--GGG-CTTCSEESSSCC-
T ss_pred             CccccccC--hhh-hhccceeehhhhc
Confidence            55554433  222 4455555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.71  E-value=2.2e-08  Score=102.81  Aligned_cols=99  Identities=20%  Similarity=0.286  Sum_probs=57.4

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+++..+  +..+++|+.|+|++|++++. +. +..+++|+.|+|++|.+++. |. +..+++|+.|+|++
T Consensus       131 L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~  204 (308)
T 1h6u_A          131 LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKN  204 (308)
T ss_dssp             CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTT
T ss_pred             CCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccC
Confidence            5566666666655332  56666666666666666643 22 56666666666666666633 22 55666666666666


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      |++++..|  +. .+.+|+.|++++|+.
T Consensus       205 N~l~~~~~--l~-~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          205 NQISDVSP--LA-NTSNLFIVTLTNQTI  229 (308)
T ss_dssp             SCCCBCGG--GT-TCTTCCEEEEEEEEE
T ss_pred             CccCcccc--cc-CCCCCCEEEccCCee
Confidence            66664322  32 255666666666653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.71  E-value=1.1e-08  Score=105.20  Aligned_cols=101  Identities=22%  Similarity=0.309  Sum_probs=83.8

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+++. + .+..+++|+.|+|++|.+++..+  +..+++|+.|+|++|.+++ ++. +..+++|+.|+|+
T Consensus       108 ~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~  181 (308)
T 1h6u_A          108 SIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKAD  181 (308)
T ss_dssp             TCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECC
Confidence            378899999999874 3 38999999999999999986544  8899999999999999985 444 8899999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +|++++. |. +. .+.+|+.|++++|+..
T Consensus       182 ~n~l~~~-~~-l~-~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          182 DNKISDI-SP-LA-SLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             SSCCCCC-GG-GG-GCTTCCEEECTTSCCC
T ss_pred             CCccCcC-hh-hc-CCCCCCEEEccCCccC
Confidence            9999854 43 43 3788999999999744

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.71  E-value=1.9e-08  Score=112.92  Aligned_cols=81  Identities=26%  Similarity=0.400  Sum_probs=68.9

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .|+.|+|++|.|++.  ..+..|++|+.|+|++|.|++..|  +..|++|+.|+|++|.|++ +| .+..+++|+.|+|+
T Consensus       132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  205 (605)
T ss_dssp             TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECC
T ss_pred             ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEcc
Confidence            478899999999875  678889999999999999987666  8889999999999999985 44 58889999999999


Q ss_pred             CCcCccc
Q 006940          501 GNTLSGR  507 (624)
Q Consensus       501 ~N~l~g~  507 (624)
                      +|++++.
T Consensus       206 ~N~l~~~  212 (605)
T 1m9s_A          206 SQECLNK  212 (605)
T ss_dssp             SEEEECC
T ss_pred             CCcCcCC
Confidence            9998753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.70  E-value=2e-10  Score=110.06  Aligned_cols=101  Identities=22%  Similarity=0.311  Sum_probs=66.4

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+++ +| .+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+|++
T Consensus        50 L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~  124 (198)
T 1ds9_A           50 CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSN  124 (198)
T ss_dssp             CSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESE
T ss_pred             CCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCC
Confidence            5667777777766 55 6677777777777777776 566666666777777777777764 44 466667777777777


Q ss_pred             CcCcccCCc--hhhhccCCCCEEeccCCCC
Q 006940          502 NTLSGRVPA--ALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       502 N~l~g~iP~--~~~~~l~~l~~l~l~~N~~  529 (624)
                      |++++ +|.  .+.. +.+|+.|++++|+.
T Consensus       125 N~i~~-~~~~~~l~~-l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          125 NKITN-WGEIDKLAA-LDKLEDLLLAGNPL  152 (198)
T ss_dssp             EECCC-HHHHHHHTT-TTTCSEEEECSCHH
T ss_pred             CcCCc-hhHHHHHhc-CCCCCEEEecCCcc
Confidence            77763 222  3332 56677777777764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.70  E-value=2.5e-08  Score=111.05  Aligned_cols=95  Identities=24%  Similarity=0.342  Sum_probs=53.1

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCC-------
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL-------  494 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L-------  494 (624)
                      |+.|+|++|.|++ +|.   .+++|+.|+|++|+|++ +|. |.  ++|+.|+|++|+|+ .+|. +..  +|       
T Consensus       142 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L  209 (571)
T 3cvr_A          142 LEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETE  209 (571)
T ss_dssp             CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CC
T ss_pred             ccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccc
Confidence            5556666666655 443   35566666666666664 554 44  56666666666666 5555 333  44       


Q ss_pred             CEEeccCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          495 RRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       495 ~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +.|+|++|+++ .+|..+.. +.+|+.|++++|+..
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLS  243 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCC
T ss_pred             eEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCC
Confidence            66666666665 45655554 555666666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.66  E-value=3.7e-10  Score=108.23  Aligned_cols=102  Identities=22%  Similarity=0.338  Sum_probs=84.3

Q ss_pred             EEEEEcCCCCCccCCCc------ccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCC
Q 006940          422 IDGLGLDNQGLRGFLPN------GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR  495 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~------~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~  495 (624)
                      ++.++++.+.+.|.+|.      .+..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.++ .+|..+..+++|+
T Consensus        20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~   96 (198)
T 1ds9_A           20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE   96 (198)
T ss_dssp             CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred             ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence            34456666667776666      89999999999999999996 77 8899999999999999998 7888888889999


Q ss_pred             EEeccCCcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          496 RLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       496 ~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      .|+|++|++++ +| .+.. +.+|+.|++++|..
T Consensus        97 ~L~L~~N~l~~-l~-~~~~-l~~L~~L~l~~N~i  127 (198)
T 1ds9_A           97 ELWISYNQIAS-LS-GIEK-LVNLRVLYMSNNKI  127 (198)
T ss_dssp             EEEEEEEECCC-HH-HHHH-HHHSSEEEESEEEC
T ss_pred             EEECcCCcCCc-CC-cccc-CCCCCEEECCCCcC
Confidence            99999999985 56 4544 67899999999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.65  E-value=6.3e-08  Score=97.10  Aligned_cols=98  Identities=24%  Similarity=0.350  Sum_probs=83.3

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|++++|+++. +| .+..+++|+.|+|++|++++..+  +..+++|+.|+|++|++++ +|....  ++|+.|+|++
T Consensus        43 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~  115 (263)
T 1xeu_A           43 VQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDN  115 (263)
T ss_dssp             CSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCS
T ss_pred             CcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc--CcccEEEccC
Confidence            7789999999985 55 78999999999999999996544  9999999999999999995 554333  8999999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      |++++ +| .+.. +.+|+.|++++|..
T Consensus       116 N~l~~-~~-~l~~-l~~L~~L~Ls~N~i  140 (263)
T 1xeu_A          116 NELRD-TD-SLIH-LKNLEILSIRNNKL  140 (263)
T ss_dssp             SCCSB-SG-GGTT-CTTCCEEECTTSCC
T ss_pred             CccCC-Ch-hhcC-cccccEEECCCCcC
Confidence            99996 44 3544 78899999999973

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.65  E-value=3.7e-09  Score=112.04  Aligned_cols=110  Identities=16%  Similarity=0.297  Sum_probs=92.2

Q ss_pred             EEEEEEcCCCCCc--c---CCCcccccccccccccCcCcccc----ccCCCCcCCCccCCeEeccCCCCCCC----Cccc
Q 006940          421 VIDGLGLDNQGLR--G---FLPNGISKLRHLQSINLSGNSIR----GAIPSSLGTIASLEVLDLSYNFFNGS----IPES  487 (624)
Q Consensus       421 ~l~~L~L~~n~l~--g---~~p~~~~~L~~L~~L~Ls~N~l~----g~ip~~l~~l~~L~~LdLs~N~l~g~----iP~~  487 (624)
                      .++.|+|++|.|.  |   .+|..+..+++|+.|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    +|..
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  267 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  267 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence            3788999999998  3   34558889999999999999996    67888889999999999999999865    5666


Q ss_pred             c--CCCCCCCEEeccCCcCcc----cCCchhhhccCCCCEEeccCCCCC
Q 006940          488 L--GQLTALRRLNLNGNTLSG----RVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       488 l--~~l~~L~~L~Ls~N~l~g----~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +  +.+++|+.|+|++|.+++    .+|..+...+++|+.|++++|+..
T Consensus       268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            6  448999999999999997    588887555788999999998743

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.65  E-value=5.6e-08  Score=105.55  Aligned_cols=98  Identities=15%  Similarity=0.173  Sum_probs=81.0

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.|++. |  ++.+++|+.|+|++|++++. |  ++.+++|+.|+|++|++++ +|  ++.+++|+.|+|+
T Consensus        65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~  135 (457)
T 3bz5_A           65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA  135 (457)
T ss_dssp             TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred             CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence            478899999999884 3  88899999999999999874 3  8889999999999999986 55  8889999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC  531 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc  531 (624)
                      +|++++ +|  +.. +.+|+.|++++|....
T Consensus       136 ~N~l~~-l~--l~~-l~~L~~L~l~~n~~~~  162 (457)
T 3bz5_A          136 RNTLTE-ID--VSH-NTQLTELDCHLNKKIT  162 (457)
T ss_dssp             TSCCSC-CC--CTT-CTTCCEEECTTCSCCC
T ss_pred             CCccce-ec--ccc-CCcCCEEECCCCCccc
Confidence            999986 44  333 6789999999986443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.65  E-value=4.6e-08  Score=101.73  Aligned_cols=104  Identities=22%  Similarity=0.375  Sum_probs=89.7

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+++..+  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++ + +.+..+++|+.|+|+
T Consensus       222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLN  295 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECC
T ss_pred             cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECc
Confidence            37889999999987544  88999999999999999863  468899999999999999985 4 458899999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC  531 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc  531 (624)
                      +|++++..|..+.. +.+|+.|++++|+..+
T Consensus       296 ~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          296 NNQLGNEDMEVIGG-LTNLTTLFLSQNHITD  325 (347)
T ss_dssp             SSCCCGGGHHHHHT-CTTCSEEECCSSSCCC
T ss_pred             CCcCCCcChhHhhc-cccCCEEEccCCcccc
Confidence            99999887777765 7899999999998544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.62  E-value=3.3e-08  Score=107.46  Aligned_cols=101  Identities=27%  Similarity=0.362  Sum_probs=80.8

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+.+..+  +..+++|+.|+|++|++++..|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++
T Consensus       289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~  362 (466)
T 1o6v_A          289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGH  362 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred             cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCC
Confidence            7778888888887544  7788888888888888887665  77888888999988888864  4678888899999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAGLC  531 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc  531 (624)
                      |++++..|  +.. +..|+.|++++|++.+
T Consensus       363 n~l~~~~~--~~~-l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          363 NQISDLTP--LAN-LTRITQLGLNDQAWTN  389 (466)
T ss_dssp             SCCCBCGG--GTT-CTTCCEEECCCEEEEC
T ss_pred             CccCccch--hhc-CCCCCEEeccCCcccC
Confidence            99987766  433 6788888888887544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.60  E-value=2.2e-08  Score=104.66  Aligned_cols=106  Identities=17%  Similarity=0.097  Sum_probs=84.6

Q ss_pred             CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCC-CcCCCccCCe-Eecc
Q 006940          404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEV-LDLS  476 (624)
Q Consensus       404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~-LdLs  476 (624)
                      |.|..|.|+..+..     ....++.|+|++|+|+..-+..|.+|++|+.|+|++|++.+.+|. .|.+|++|+. +.++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56778888743211     123588999999999976666899999999999999999877764 5788888775 6677


Q ss_pred             CCCCCCCCccccCCCCCCCEEeccCCcCcccCC
Q 006940          477 YNFFNGSIPESLGQLTALRRLNLNGNTLSGRVP  509 (624)
Q Consensus       477 ~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP  509 (624)
                      .|+++...|..+..+++|+.|++++|++++..+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             CCcccccCchhhhhccccccccccccccccCCc
Confidence            899997778889999999999999999985433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.59  E-value=8e-08  Score=104.46  Aligned_cols=99  Identities=23%  Similarity=0.359  Sum_probs=56.9

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+++..+  +..+++|+.|+|++|++.+..+  +..+++|+.|+|++|++++..|  +..+++|+.|++++
T Consensus       267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~  340 (466)
T 1o6v_A          267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN  340 (466)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred             CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence            5556666666655333  5566666666666666664333  5566666666666666665444  45666666666666


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      |++++. + .+.. +.+|+.|++++|+.
T Consensus       341 n~l~~~-~-~l~~-l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          341 NKVSDV-S-SLAN-LTNINWLSAGHNQI  365 (466)
T ss_dssp             SCCCCC-G-GGTT-CTTCCEEECCSSCC
T ss_pred             CccCCc-h-hhcc-CCCCCEEeCCCCcc
Confidence            666643 2 2332 45566666666653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.57  E-value=1.1e-08  Score=105.83  Aligned_cols=104  Identities=19%  Similarity=0.162  Sum_probs=55.7

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCcccccc-CCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      ++.|++++|.+.+..+. +..+++|+.|+|++|.+++. +|..+..+++|+.|+|++|.+++..|..++.+++|+.|+|+
T Consensus        72 l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~  150 (336)
T 2ast_B           72 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  150 (336)
T ss_dssp             CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence            44555555555554443 33455566666666555544 55555555556666666555555555555555555555555


Q ss_pred             CC-cCccc-CCchhhhccCCCCEEeccCC
Q 006940          501 GN-TLSGR-VPAALGGRLLHRASFNFTDN  527 (624)
Q Consensus       501 ~N-~l~g~-iP~~~~~~l~~l~~l~l~~N  527 (624)
                      +| .+++. +|..+.. +++|+.|++++|
T Consensus       151 ~~~~l~~~~l~~~~~~-~~~L~~L~l~~~  178 (336)
T 2ast_B          151 GCSGFSEFALQTLLSS-CSRLDELNLSWC  178 (336)
T ss_dssp             TCBSCCHHHHHHHHHH-CTTCCEEECCCC
T ss_pred             CCCCCCHHHHHHHHhc-CCCCCEEcCCCC
Confidence            55 45432 3333332 445555555555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.57  E-value=4.1e-09  Score=109.12  Aligned_cols=84  Identities=24%  Similarity=0.283  Sum_probs=40.9

Q ss_pred             EEEEEcCCCCCccC-CCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC-CCCC-CCccccCCCCCCCEEe
Q 006940          422 IDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNG-SIPESLGQLTALRRLN  498 (624)
Q Consensus       422 l~~L~L~~n~l~g~-~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N-~l~g-~iP~~l~~l~~L~~L~  498 (624)
                      ++.|+|++|.+.+. +|..+..+++|+.|+|++|.+++..|..++.+++|+.|+|++| .+++ .+|..+..+++|+.|+
T Consensus        95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~  174 (336)
T 2ast_B           95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN  174 (336)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence            44455555555443 4444455555555555555555444444445555555555555 3443 1344444444455555


Q ss_pred             ccCC-cCc
Q 006940          499 LNGN-TLS  505 (624)
Q Consensus       499 Ls~N-~l~  505 (624)
                      |++| .++
T Consensus       175 l~~~~~l~  182 (336)
T 2ast_B          175 LSWCFDFT  182 (336)
T ss_dssp             CCCCTTCC
T ss_pred             CCCCCCcC
Confidence            5544 444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.55  E-value=2.5e-08  Score=108.29  Aligned_cols=84  Identities=15%  Similarity=0.172  Sum_probs=47.6

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccC-------------CeEeccCCCCCCCCccc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASL-------------EVLDLSYNFFNGSIPES  487 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L-------------~~LdLs~N~l~g~iP~~  487 (624)
                      .++.|++++|++ |.+|.++++|++|+.|+|++|.+.|.+|..++++.+|             +.|++++|.+++ +|..
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~   89 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL   89 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence            488899999999 8999999999999999999999999999999988765             888888888874 4442


Q ss_pred             cCCCCCCCEEeccCCcCcccCCc
Q 006940          488 LGQLTALRRLNLNGNTLSGRVPA  510 (624)
Q Consensus       488 l~~l~~L~~L~Ls~N~l~g~iP~  510 (624)
                         .++|+.|+|++|.+++ +|.
T Consensus        90 ---~~~L~~L~l~~n~l~~-lp~  108 (454)
T 1jl5_A           90 ---PPHLESLVASCNSLTE-LPE  108 (454)
T ss_dssp             ---CTTCSEEECCSSCCSS-CCC
T ss_pred             ---cCCCCEEEccCCcCCc-ccc
Confidence               2566666666666664 554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.53  E-value=2.7e-07  Score=100.12  Aligned_cols=94  Identities=21%  Similarity=0.332  Sum_probs=46.1

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|++++|.+++ +|..+   .+|+.|+|++|++++ +| .++.+++|+.|++++|++++ +|...   ++|+.|++++
T Consensus       155 L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~  224 (454)
T 1jl5_A          155 LKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGN  224 (454)
T ss_dssp             CCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCS
T ss_pred             CCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcC
Confidence            4444444444443 33221   244444555555443 33 35555555555555555553 33321   3455555555


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |+++ .+|. +.. +.+|+.|++++|.
T Consensus       225 n~l~-~lp~-~~~-l~~L~~L~l~~N~  248 (454)
T 1jl5_A          225 NILE-ELPE-LQN-LPFLTTIYADNNL  248 (454)
T ss_dssp             SCCS-SCCC-CTT-CTTCCEEECCSSC
T ss_pred             CcCC-cccc-cCC-CCCCCEEECCCCc
Confidence            5555 4553 332 5566667776665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.53  E-value=1.6e-08  Score=106.30  Aligned_cols=108  Identities=25%  Similarity=0.324  Sum_probs=78.0

Q ss_pred             EEEEEcCCCCCccCCCcccccc-----cccccccCcCccccccCCCCcCC----C-ccCCeEeccCCCCCCCCccccC--
Q 006940          422 IDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGAIPSSLGT----I-ASLEVLDLSYNFFNGSIPESLG--  489 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L-----~~L~~L~Ls~N~l~g~ip~~l~~----l-~~L~~LdLs~N~l~g~iP~~l~--  489 (624)
                      ++.|+|++|.+.+..+..+..+     ++|+.|+|++|.+++..+..+..    + ++|+.|+|++|.+++..+..+.  
T Consensus        53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  132 (362)
T 3goz_A           53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA  132 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence            7788888888888777777765     88888888888888766654443    3 7888888888888866654433  


Q ss_pred             --C-CCCCCEEeccCCcCcccCCchh----hhccCCCCEEeccCCCC
Q 006940          490 --Q-LTALRRLNLNGNTLSGRVPAAL----GGRLLHRASFNFTDNAG  529 (624)
Q Consensus       490 --~-l~~L~~L~Ls~N~l~g~iP~~~----~~~l~~l~~l~l~~N~~  529 (624)
                        . .++|+.|+|++|.++..-+..+    .....+|+.|++++|..
T Consensus       133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l  179 (362)
T 3goz_A          133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL  179 (362)
T ss_dssp             HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence              3 3588888888888875433333    33223788888888863

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.51  E-value=2.1e-07  Score=104.75  Aligned_cols=96  Identities=27%  Similarity=0.295  Sum_probs=68.4

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|++++|.|+. +|.   .+++|+.|+|++|++++ +|   ..+++|+.|+|++|.|+ .+|.   .+++|+.|+|++
T Consensus       203 L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~  270 (622)
T 3g06_A          203 LYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR  270 (622)
T ss_dssp             CCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred             hhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence            4455555555552 332   23677888888888875 55   45677888888888888 5666   567888888888


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAGLC  531 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc  531 (624)
                      |+++ .+|..+.. +.+|+.|++++|+..+
T Consensus       271 N~L~-~lp~~l~~-l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          271 NQLT-RLPESLIH-LSSETTVNLEGNPLSE  298 (622)
T ss_dssp             SCCC-SCCGGGGG-SCTTCEEECCSCCCCH
T ss_pred             CCCC-cCCHHHhh-ccccCEEEecCCCCCC
Confidence            8888 77877765 6788888888887543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.50  E-value=2.7e-07  Score=100.20  Aligned_cols=80  Identities=24%  Similarity=0.227  Sum_probs=65.5

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+++ +|  +..+++|+.|+|++|++++.   .++.+++|+.|+|++|++++ +|  ++.+++|+.|+|+
T Consensus       171 ~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~  241 (457)
T 3bz5_A          171 QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS  241 (457)
T ss_dssp             TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred             cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence            37788888888887 44  78888888888888888864   47888889999999999886 66  7888889999999


Q ss_pred             CCcCcccCC
Q 006940          501 GNTLSGRVP  509 (624)
Q Consensus       501 ~N~l~g~iP  509 (624)
                      +|++++..+
T Consensus       242 ~N~l~~~~~  250 (457)
T 3bz5_A          242 VNPLTELDV  250 (457)
T ss_dssp             SSCCSCCCC
T ss_pred             CCcCCCcCH
Confidence            999886543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.48  E-value=2.1e-08  Score=106.17  Aligned_cols=109  Identities=26%  Similarity=0.335  Sum_probs=88.5

Q ss_pred             EEEEEEcCCCCCc-cCCC---cccccccccccccCcCcccc--c---cCCCCcCCCccCCeEeccCCCCC----CCCccc
Q 006940          421 VIDGLGLDNQGLR-GFLP---NGISKLRHLQSINLSGNSIR--G---AIPSSLGTIASLEVLDLSYNFFN----GSIPES  487 (624)
Q Consensus       421 ~l~~L~L~~n~l~-g~~p---~~~~~L~~L~~L~Ls~N~l~--g---~ip~~l~~l~~L~~LdLs~N~l~----g~iP~~  487 (624)
                      .++.|+|++|.+. +.++   ..+..+++|+.|+|++|+++  |   .+|..+..+++|+.|+|++|.++    +.+|..
T Consensus       160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~  239 (386)
T 2ca6_A          160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  239 (386)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence            3778999999997 4555   46778899999999999998  3   45658889999999999999996    678888


Q ss_pred             cCCCCCCCEEeccCCcCccc----CCchhhh-ccCCCCEEeccCCCC
Q 006940          488 LGQLTALRRLNLNGNTLSGR----VPAALGG-RLLHRASFNFTDNAG  529 (624)
Q Consensus       488 l~~l~~L~~L~Ls~N~l~g~----iP~~~~~-~l~~l~~l~l~~N~~  529 (624)
                      +..+++|+.|+|++|++++.    +|..+.. .+.+|+.|++++|..
T Consensus       240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            99999999999999999866    4444421 257799999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.45  E-value=3.9e-08  Score=103.31  Aligned_cols=109  Identities=24%  Similarity=0.261  Sum_probs=91.0

Q ss_pred             EEEEEcCCCCCccCCC----ccccccc-ccccccCcCccccccCCCCcCCC-----ccCCeEeccCCCCCCCCccccC--
Q 006940          422 IDGLGLDNQGLRGFLP----NGISKLR-HLQSINLSGNSIRGAIPSSLGTI-----ASLEVLDLSYNFFNGSIPESLG--  489 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p----~~~~~L~-~L~~L~Ls~N~l~g~ip~~l~~l-----~~L~~LdLs~N~l~g~iP~~l~--  489 (624)
                      ++.|+|++|.|++..+    ..+..++ +|+.|+|++|++++..+..+..+     ++|+.|+|++|.+++..+..+.  
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            8899999999998777    6788888 89999999999998877777775     9999999999999987776544  


Q ss_pred             --CC-CCCCEEeccCCcCcccCCchhhhc----cCCCCEEeccCCCCC
Q 006940          490 --QL-TALRRLNLNGNTLSGRVPAALGGR----LLHRASFNFTDNAGL  530 (624)
Q Consensus       490 --~l-~~L~~L~Ls~N~l~g~iP~~~~~~----l~~l~~l~l~~N~~l  530 (624)
                        .+ ++|+.|+|++|++++..+..+...    ..+|+.|++++|...
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence              44 899999999999987666555442    257999999999743

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=1.1e-07  Score=95.05  Aligned_cols=81  Identities=25%  Similarity=0.373  Sum_probs=64.3

Q ss_pred             ccccccccccCcCccccc--cCCCCcCCCccCCeEeccCCCCCCCCccccCCCC--CCCEEeccCCcCcccCCch-----
Q 006940          441 SKLRHLQSINLSGNSIRG--AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT--ALRRLNLNGNTLSGRVPAA-----  511 (624)
Q Consensus       441 ~~L~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~--~L~~L~Ls~N~l~g~iP~~-----  511 (624)
                      .+|++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|+.|+|++|++.+.+|..     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            568899999999999998  5667778899999999999999964  3344444  8999999999999888742     


Q ss_pred             -hhhccCCCCEEe
Q 006940          512 -LGGRLLHRASFN  523 (624)
Q Consensus       512 -~~~~l~~l~~l~  523 (624)
                       +...+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             334467787775

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.26  E-value=8.4e-07  Score=92.59  Aligned_cols=102  Identities=15%  Similarity=0.123  Sum_probs=82.4

Q ss_pred             EEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCcc-ccCCCCCCCE-EeccC
Q 006940          424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRR-LNLNG  501 (624)
Q Consensus       424 ~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~-~l~~l~~L~~-L~Ls~  501 (624)
                      .++.++++|+ .+|..+  .++|+.|+|++|+|+...+..|.+|++|+.|+|++|++.+.+|. .+.++++|.. +.+++
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            3678889988 577766  36899999999999955556799999999999999999877774 6788988875 77788


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      |+++...|..+. .+.+|+.|++++|..
T Consensus        90 N~l~~l~~~~f~-~l~~L~~L~l~~n~l  116 (350)
T 4ay9_X           90 NNLLYINPEAFQ-NLPNLQYLLISNTGI  116 (350)
T ss_dssp             TTCCEECTTSBC-CCTTCCEEEEEEECC
T ss_pred             CcccccCchhhh-hcccccccccccccc
Confidence            999955555554 478899999998864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.25  E-value=7.4e-07  Score=100.24  Aligned_cols=84  Identities=31%  Similarity=0.420  Sum_probs=75.5

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.|++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++
T Consensus       223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred             CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence            7889999999997 56   56689999999999999 5776   6789999999999999 8899999999999999999


Q ss_pred             CcCcccCCchhhh
Q 006940          502 NTLSGRVPAALGG  514 (624)
Q Consensus       502 N~l~g~iP~~~~~  514 (624)
                      |++++.+|..+..
T Consensus       294 N~l~~~~~~~l~~  306 (622)
T 3g06_A          294 NPLSERTLQALRE  306 (622)
T ss_dssp             CCCCHHHHHHHHH
T ss_pred             CCCCCcCHHHHHh
Confidence            9999998887654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.13  E-value=1.4e-07  Score=101.95  Aligned_cols=84  Identities=21%  Similarity=0.207  Sum_probs=35.6

Q ss_pred             EEEEEcCCCCCccC----CCcccccccccccccCcCccccccCCCCcCC-----CccCCeEeccCCCCCCC----Ccccc
Q 006940          422 IDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGAIPSSLGT-----IASLEVLDLSYNFFNGS----IPESL  488 (624)
Q Consensus       422 l~~L~L~~n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~-----l~~L~~LdLs~N~l~g~----iP~~l  488 (624)
                      ++.|+|++|.++..    ++..+..+++|+.|+|++|.+++..+..+..     .++|+.|+|++|.+++.    +|..+
T Consensus       258 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  337 (461)
T 1z7x_W          258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL  337 (461)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH
Confidence            44455555554432    3444444455555555555443322211111     13444444444444432    23333


Q ss_pred             CCCCCCCEEeccCCcCc
Q 006940          489 GQLTALRRLNLNGNTLS  505 (624)
Q Consensus       489 ~~l~~L~~L~Ls~N~l~  505 (624)
                      ..+++|+.|+|++|+++
T Consensus       338 ~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          338 AQNRFLLELQISNNRLE  354 (461)
T ss_dssp             HHCSSCCEEECCSSBCH
T ss_pred             hhCCCccEEEccCCccc
Confidence            34444444444444444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.07  E-value=2e-07  Score=100.77  Aligned_cols=107  Identities=21%  Similarity=0.149  Sum_probs=74.3

Q ss_pred             EEEEEcCCCCCccCCCcccccc-----cccccccCcCcccccc----CCCCcCCCccCCeEeccCCCCCCCCccccCC--
Q 006940          422 IDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIPESLGQ--  490 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L-----~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~--  490 (624)
                      ++.|+|++|.+....+..+...     ++|+.|+|++|.+++.    ++..+..+++|+.|+|++|.+++..+..+..  
T Consensus       286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  365 (461)
T 1z7x_W          286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL  365 (461)
T ss_dssp             CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence            6778888888765444444332     5788888888888765    4556666788888888888877554443332  


Q ss_pred             ---CCCCCEEeccCCcCcc----cCCchhhhccCCCCEEeccCCCC
Q 006940          491 ---LTALRRLNLNGNTLSG----RVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       491 ---l~~L~~L~Ls~N~l~g----~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                         .++|+.|+|++|++++    .+|..+.. +++|+.|++++|+.
T Consensus       366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCL  410 (461)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSC
T ss_pred             cCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCC
Confidence               5678888888888875    66666655 67788888888763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.95  E-value=1e-06  Score=92.87  Aligned_cols=108  Identities=18%  Similarity=0.141  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCCccCCCcccc-----cccccccccCcCccccc----cCCCCcCCCccCCeEeccCCCCCC----CCcccc
Q 006940          422 IDGLGLDNQGLRGFLPNGIS-----KLRHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNG----SIPESL  488 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~-----~L~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~LdLs~N~l~g----~iP~~l  488 (624)
                      ++.|+|++|.|...-...+.     ..++|+.|+|++|.++.    .++..+..+++|+.|||++|.++.    .++..+
T Consensus       128 L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L  207 (372)
T 3un9_A          128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL  207 (372)
T ss_dssp             EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred             ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence            67777877777644333332     34678888888888764    234445667788888888888763    234556


Q ss_pred             CCCCCCCEEeccCCcCcccCCchhhh---ccCCCCEEeccCCCC
Q 006940          489 GQLTALRRLNLNGNTLSGRVPAALGG---RLLHRASFNFTDNAG  529 (624)
Q Consensus       489 ~~l~~L~~L~Ls~N~l~g~iP~~~~~---~l~~l~~l~l~~N~~  529 (624)
                      ...++|+.|+|++|.++..-...+..   ....|+.|++++|+.
T Consensus       208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            67778888888888887432222222   136788899888863

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.92  E-value=3.3e-06  Score=84.41  Aligned_cols=76  Identities=28%  Similarity=0.327  Sum_probs=64.2

Q ss_pred             EEEEEEcCCCCCcc--CCCcccccccccccccCcCccccccCCCCcCCCc--cCCeEeccCCCCCCCCcc-------ccC
Q 006940          421 VIDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA--SLEVLDLSYNFFNGSIPE-------SLG  489 (624)
Q Consensus       421 ~l~~L~L~~n~l~g--~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~LdLs~N~l~g~iP~-------~l~  489 (624)
                      .|+.|+|++|.|++  .+|..+..|++|+.|+|++|+|++.  ..+..+.  +|+.|+|++|.+.+.+|+       .+.
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence            38899999999998  6677888999999999999999975  3344444  999999999999988873       367


Q ss_pred             CCCCCCEEe
Q 006940          490 QLTALRRLN  498 (624)
Q Consensus       490 ~l~~L~~L~  498 (624)
                      .+++|+.||
T Consensus       249 ~~P~L~~LD  257 (267)
T 3rw6_A          249 RFPKLLRLD  257 (267)
T ss_dssp             HCTTCCEES
T ss_pred             HCcccCeEC
Confidence            889999887

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.76  E-value=2.7e-06  Score=89.66  Aligned_cols=108  Identities=19%  Similarity=0.170  Sum_probs=80.9

Q ss_pred             EEEEEEcCCCCCccCCCccc-ccccccccccCcCccccccCCCCc-----CCCccCCeEeccCCCCCC----CCccccCC
Q 006940          421 VIDGLGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSL-----GTIASLEVLDLSYNFFNG----SIPESLGQ  490 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~-~~L~~L~~L~Ls~N~l~g~ip~~l-----~~l~~L~~LdLs~N~l~g----~iP~~l~~  490 (624)
                      .++.|+|++|.|.......+ ..|.+|+.|+|++|.++..-...+     .....|+.|+|++|.++.    .++..+..
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  181 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG  181 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence            48999999999975433333 357789999999999975433333     246789999999999874    34555678


Q ss_pred             CCCCCEEeccCCcCccc----CCchhhhccCCCCEEeccCCCC
Q 006940          491 LTALRRLNLNGNTLSGR----VPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       491 l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      +++|++|+|++|.++..    ++..+.. ..+|+.|++++|..
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~-~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDR-NRQLQELNVAYNGA  223 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGG-CSCCCEEECCSSCC
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhc-CCCcCeEECCCCCC
Confidence            89999999999999743    2233333 46799999999974

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.70  E-value=3.8e-05  Score=79.17  Aligned_cols=99  Identities=13%  Similarity=0.109  Sum_probs=80.2

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCC-eEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLE-VLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~-~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      ++.|+|++|+++..-+..|.+|.+|+.|+|+.| +...-+..|.+|.+|+ .|+|++ +++..-+..|.++++|+.|+|+
T Consensus       228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred             CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence            778999999998776778999999999999998 7755567899999999 999988 6774555788999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEe
Q 006940          501 GNTLSGRVPAALGGRLLHRASFN  523 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~  523 (624)
                      .|+++ .|+...+....+|+.+.
T Consensus       306 ~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          306 GDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             SSCCC-EECTTTTCTTCCCCEEE
T ss_pred             CCccC-ccchhhhcCCcchhhhc
Confidence            99998 56665444466677664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.68  E-value=3.3e-06  Score=94.16  Aligned_cols=107  Identities=14%  Similarity=0.098  Sum_probs=76.3

Q ss_pred             EEEEEcC----CCCCccC-----CCcccccccccccccCcCc--cccccCCCCcCC-CccCCeEeccCCCCCC-CCcccc
Q 006940          422 IDGLGLD----NQGLRGF-----LPNGISKLRHLQSINLSGN--SIRGAIPSSLGT-IASLEVLDLSYNFFNG-SIPESL  488 (624)
Q Consensus       422 l~~L~L~----~n~l~g~-----~p~~~~~L~~L~~L~Ls~N--~l~g~ip~~l~~-l~~L~~LdLs~N~l~g-~iP~~l  488 (624)
                      ++.|+|+    .|.+++.     ++..+.++++|+.|+|+.+  .+++..+..++. +++|+.|+|++|.+++ .++..+
T Consensus       405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  484 (592)
T 3ogk_B          405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS  484 (592)
T ss_dssp             CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH
T ss_pred             CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH
Confidence            5666664    5566653     3334666788888888643  355554444443 7889999999999886 456667


Q ss_pred             CCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          489 GQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       489 ~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      ..+++|+.|+|++|++++.....+...+++|+.|++++|+
T Consensus       485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            8889999999999998765444444457889999999998

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.58  E-value=7.6e-06  Score=77.24  Aligned_cols=107  Identities=17%  Similarity=0.270  Sum_probs=77.5

Q ss_pred             EEEEEcCCC-CCccC----CCcccccccccccccCcCcccccc----CCCCcCCCccCCeEeccCCCCCCC----Ccccc
Q 006940          422 IDGLGLDNQ-GLRGF----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESL  488 (624)
Q Consensus       422 l~~L~L~~n-~l~g~----~p~~~~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~----iP~~l  488 (624)
                      ++.|+|++| .|...    +...+...++|+.|+|++|.+...    +...+...+.|+.|+|++|.++..    +...+
T Consensus        38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L  117 (185)
T 1io0_A           38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL  117 (185)
T ss_dssp             CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred             CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH
Confidence            778999998 88642    344566678999999999998642    233455567899999999998842    45667


Q ss_pred             CCCCCCCEEec--cCCcCcccCCchhhhc---cCCCCEEeccCCC
Q 006940          489 GQLTALRRLNL--NGNTLSGRVPAALGGR---LLHRASFNFTDNA  528 (624)
Q Consensus       489 ~~l~~L~~L~L--s~N~l~g~iP~~~~~~---l~~l~~l~l~~N~  528 (624)
                      ...++|+.|+|  ++|.+...--..+...   ...|+.|++++|.
T Consensus       118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            77889999999  8899974422222221   3678899987774

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.38  E-value=0.00016  Score=74.50  Aligned_cols=35  Identities=6%  Similarity=0.139  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCcccc
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR  457 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~  457 (624)
                      |+.|.|++ +++..-+..|.+|++|+.|+|+.|.+.
T Consensus       103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~  137 (329)
T 3sb4_A          103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP  137 (329)
T ss_dssp             CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred             CcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc
Confidence            55566666 565544556666677777777666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.32  E-value=1.2e-05  Score=89.67  Aligned_cols=86  Identities=16%  Similarity=0.234  Sum_probs=36.2

Q ss_pred             ccccccccccCcCccccccCCCCcCC-CccCCeEeccCCCCCCCCcccc-CCCCCCCEEeccCCcCcccCCchhhhccCC
Q 006940          441 SKLRHLQSINLSGNSIRGAIPSSLGT-IASLEVLDLSYNFFNGSIPESL-GQLTALRRLNLNGNTLSGRVPAALGGRLLH  518 (624)
Q Consensus       441 ~~L~~L~~L~Ls~N~l~g~ip~~l~~-l~~L~~LdLs~N~l~g~iP~~l-~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~  518 (624)
                      ..+++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+..+...+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            3344444444443 333332223332 4445555555555443322222 334555555555555533222222222344


Q ss_pred             CCEEeccCC
Q 006940          519 RASFNFTDN  527 (624)
Q Consensus       519 l~~l~l~~N  527 (624)
                      |+.|++++|
T Consensus       508 L~~L~l~~~  516 (594)
T 2p1m_B          508 MRSLWMSSC  516 (594)
T ss_dssp             SSEEEEESS
T ss_pred             CCEEeeeCC
Confidence            555555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.23  E-value=3.8e-05  Score=85.43  Aligned_cols=38  Identities=24%  Similarity=0.273  Sum_probs=16.6

Q ss_pred             cccccccccCcCccccccCCCCc----CCCccCCeEeccCCC
Q 006940          442 KLRHLQSINLSGNSIRGAIPSSL----GTIASLEVLDLSYNF  479 (624)
Q Consensus       442 ~L~~L~~L~Ls~N~l~g~ip~~l----~~l~~L~~LdLs~N~  479 (624)
                      ++++|+.|+|++|.+++..+..+    ..+++|+.|+|++|.
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            44455555555554443322222    133455555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.22  E-value=0.00014  Score=80.93  Aligned_cols=36  Identities=17%  Similarity=0.101  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCCc----cCCCcccccccccccccCcCcccc
Q 006940          422 IDGLGLDNQGLR----GFLPNGISKLRHLQSINLSGNSIR  457 (624)
Q Consensus       422 l~~L~L~~n~l~----g~~p~~~~~L~~L~~L~Ls~N~l~  457 (624)
                      ++.|+|++|.++    +.++..+.++++|+.|+|++|.+.
T Consensus       194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred             ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence            444555555544    122223334455555555554443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.09  E-value=0.00088  Score=59.09  Aligned_cols=59  Identities=22%  Similarity=0.312  Sum_probs=36.1

Q ss_pred             eEeccCCCCC-CCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          472 VLDLSYNFFN-GSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       472 ~LdLs~N~l~-g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      .++.+++.|+ ..+|..+.  .+|+.|+|++|+|+ .+|...+..+.+|+.|+|.+|++.|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCeeccC
Confidence            4555555554 24443321  34667777777776 556555555667777888888887764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.72  E-value=0.00012  Score=68.84  Aligned_cols=84  Identities=18%  Similarity=0.201  Sum_probs=66.6

Q ss_pred             EEEEEcCCCCCccC----CCcccccccccccccCcCcccccc----CCCCcCCCccCCeEec--cCCCCCCC----Cccc
Q 006940          422 IDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDL--SYNFFNGS----IPES  487 (624)
Q Consensus       422 l~~L~L~~n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdL--s~N~l~g~----iP~~  487 (624)
                      ++.|+|++|.|...    +...+...+.|+.|+|++|.+...    +...+...+.|+.|+|  ++|.++..    +...
T Consensus        67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~  146 (185)
T 1io0_A           67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM  146 (185)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred             cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence            78899999999642    344566668999999999999753    4556777889999999  88998743    3345


Q ss_pred             cCCCCCCCEEeccCCcCc
Q 006940          488 LGQLTALRRLNLNGNTLS  505 (624)
Q Consensus       488 l~~l~~L~~L~Ls~N~l~  505 (624)
                      +...++|+.|+|++|.+.
T Consensus       147 L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          147 LEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCcCEEeccCCCCC
Confidence            566789999999999885

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.48  E-value=0.00034  Score=73.09  Aligned_cols=15  Identities=20%  Similarity=0.516  Sum_probs=7.1

Q ss_pred             CCCCCEEeccCCcCc
Q 006940          491 LTALRRLNLNGNTLS  505 (624)
Q Consensus       491 l~~L~~L~Ls~N~l~  505 (624)
                      +++|+.|+|+.|.++
T Consensus       278 ~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          278 LPQLETMDISAGVLT  292 (362)
T ss_dssp             GGGCSEEECCSSCCB
T ss_pred             CCCCCEEECCCCCCC
Confidence            344445555444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.34  E-value=0.00049  Score=63.92  Aligned_cols=83  Identities=13%  Similarity=0.108  Sum_probs=55.5

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCcc-ccccCCCCcCCC----ccCCeEeccCCC-CCCCCccccCCCCCC
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTI----ASLEVLDLSYNF-FNGSIPESLGQLTAL  494 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~g~ip~~l~~l----~~L~~LdLs~N~-l~g~iP~~l~~l~~L  494 (624)
                      .|+.|+|+++.++..--..+.++++|+.|+|+++. ++..--..+..+    ++|+.|+|+++. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            58889999988765434456778888888888874 553322334443    368888888874 552222345677888


Q ss_pred             CEEeccCCc
Q 006940          495 RRLNLNGNT  503 (624)
Q Consensus       495 ~~L~Ls~N~  503 (624)
                      +.|+|++..
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            888888764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.24  E-value=0.006  Score=53.67  Aligned_cols=37  Identities=30%  Similarity=0.275  Sum_probs=20.7

Q ss_pred             cCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCc
Q 006940          469 SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS  505 (624)
Q Consensus       469 ~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  505 (624)
                      +|+.|+|++|+|+..-+..+..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3555566666655333344555666666666666553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.91  E-value=0.0083  Score=63.45  Aligned_cols=102  Identities=12%  Similarity=0.118  Sum_probs=76.1

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCcccc-----ccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCE
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-----GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR  496 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~-----g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~  496 (624)
                      |+.+.| .++++..-...|.++.+|+.++|.+|.+.     ..-+..|.+|.+|+.++|.+ .++-.-...+.++++|+.
T Consensus       250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~  327 (401)
T 4fdw_A          250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ  327 (401)
T ss_dssp             CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred             ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence            556777 45566555678899999999999988775     23457788999999999994 466344467888999999


Q ss_pred             EeccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          497 LNLNGNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       497 L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |.|..| ++ .|+...+... +|+.+.+.+|.
T Consensus       328 l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          328 LTIPAN-VT-QINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             EEECTT-CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred             EEECcc-cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence            999655 55 5555444445 89999998885

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.82  E-value=0.0026  Score=59.01  Aligned_cols=87  Identities=15%  Similarity=0.160  Sum_probs=62.2

Q ss_pred             cccccccCcCccccccCCCCcCCCccCCeEeccCCC-CCCCCccccCCC----CCCCEEeccCCc-CcccCCchhhhccC
Q 006940          444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-FNGSIPESLGQL----TALRRLNLNGNT-LSGRVPAALGGRLL  517 (624)
Q Consensus       444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~-l~g~iP~~l~~l----~~L~~L~Ls~N~-l~g~iP~~~~~~l~  517 (624)
                      .+|+.|||+++.++..--..+..+++|+.|+|+++. ++..--..++.+    ++|+.|+|+++. ++..==..+.. ++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CC
Confidence            479999999999876544567899999999999985 553222334554    479999999974 76321123443 68


Q ss_pred             CCCEEeccCCCCCC
Q 006940          518 HRASFNFTDNAGLC  531 (624)
Q Consensus       518 ~l~~l~l~~N~~lc  531 (624)
                      +|+.|++++.+.+.
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            89999999876544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.70  E-value=0.0038  Score=65.10  Aligned_cols=104  Identities=12%  Similarity=0.167  Sum_probs=70.4

Q ss_pred             EEEEEEcCCCC-CccCCCcccccccccccccCcCccccccCCCCcC--CCccCCeEeccC--CCCCCC-----Ccccc--
Q 006940          421 VIDGLGLDNQG-LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG--TIASLEVLDLSY--NFFNGS-----IPESL--  488 (624)
Q Consensus       421 ~l~~L~L~~n~-l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~--~l~~L~~LdLs~--N~l~g~-----iP~~l--  488 (624)
                      .|+.|.|++|. +  .++. + .+++|+.|+|..+.++...-..+.  .+++|+.|+|+.  |...|.     +...+  
T Consensus       173 ~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          173 LLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             TCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            37889998773 2  2343 3 388999999998887644333343  689999999864  222221     11122  


Q ss_pred             CCCCCCCEEeccCCcCcccCCchhhh--ccCCCCEEeccCCC
Q 006940          489 GQLTALRRLNLNGNTLSGRVPAALGG--RLLHRASFNFTDNA  528 (624)
Q Consensus       489 ~~l~~L~~L~Ls~N~l~g~iP~~~~~--~l~~l~~l~l~~N~  528 (624)
                      ..+++|++|+|.+|.+....+..+..  .+++|+.|+++.|.
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            35789999999999998655444442  35789999998876

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.41  E-value=0.021  Score=60.33  Aligned_cols=81  Identities=14%  Similarity=0.156  Sum_probs=64.3

Q ss_pred             EEEEEcCCCCCc-----cCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCE
Q 006940          422 IDGLGLDNQGLR-----GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR  496 (624)
Q Consensus       422 l~~L~L~~n~l~-----g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~  496 (624)
                      |+.+.|.+|.+.     ..-+..|.+|.+|+.++|. +++.-.-...|.+|.+|+.++|..| ++..-+..|.++ +|+.
T Consensus       273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~  349 (401)
T 4fdw_A          273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE  349 (401)
T ss_dssp             CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred             CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence            677888777765     3445678999999999999 4577555678999999999999665 663445678888 9999


Q ss_pred             EeccCCcCc
Q 006940          497 LNLNGNTLS  505 (624)
Q Consensus       497 L~Ls~N~l~  505 (624)
                      |++++|.+.
T Consensus       350 l~l~~n~~~  358 (401)
T 4fdw_A          350 VKVEGTTPP  358 (401)
T ss_dssp             EEECCSSCC
T ss_pred             EEEcCCCCc
Confidence            999999876

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.45  E-value=0.014  Score=55.01  Aligned_cols=81  Identities=16%  Similarity=0.282  Sum_probs=46.2

Q ss_pred             EEEEEcCCC-CCcc----CCCcccccccccccccCcCccccccCCCC----cCCCccCCeEeccCCCCCCC----Ccccc
Q 006940          422 IDGLGLDNQ-GLRG----FLPNGISKLRHLQSINLSGNSIRGAIPSS----LGTIASLEVLDLSYNFFNGS----IPESL  488 (624)
Q Consensus       422 l~~L~L~~n-~l~g----~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~----l~~l~~L~~LdLs~N~l~g~----iP~~l  488 (624)
                      ++.|+|++| .|..    .+-..+..=+.|+.|+|++|.+...--..    +..=+.|+.|+|+.|.++..    +-+.+
T Consensus        43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL  122 (197)
T 1pgv_A           43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST  122 (197)
T ss_dssp             CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred             ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence            556777764 5532    12233444567777777777776332222    22335677788888777621    22334


Q ss_pred             CCCCCCCEEeccCC
Q 006940          489 GQLTALRRLNLNGN  502 (624)
Q Consensus       489 ~~l~~L~~L~Ls~N  502 (624)
                      ..-+.|+.|+|++|
T Consensus       123 ~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          123 LVTQSIVEFKADNQ  136 (197)
T ss_dssp             TTTCCCSEEECCCC
T ss_pred             hhCCceeEEECCCC
Confidence            44566778888754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.56  E-value=0.058  Score=50.85  Aligned_cols=87  Identities=16%  Similarity=0.191  Sum_probs=59.1

Q ss_pred             cccccccccCcCc-ccccc----CCCCcCCCccCCeEeccCCCCCC----CCccccCCCCCCCEEeccCCcCcccCCchh
Q 006940          442 KLRHLQSINLSGN-SIRGA----IPSSLGTIASLEVLDLSYNFFNG----SIPESLGQLTALRRLNLNGNTLSGRVPAAL  512 (624)
Q Consensus       442 ~L~~L~~L~Ls~N-~l~g~----ip~~l~~l~~L~~LdLs~N~l~g----~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~  512 (624)
                      +-+.|+.|+|++| ++...    +-..+..-..|+.|+|++|++..    .+-+.+..-+.|+.|+|+.|.+...--..+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3468999999986 66421    22345556789999999999972    233444456889999999999974322222


Q ss_pred             hhc---cCCCCEEeccCCC
Q 006940          513 GGR---LLHRASFNFTDNA  528 (624)
Q Consensus       513 ~~~---l~~l~~l~l~~N~  528 (624)
                      ...   -..|+.|+|++|.
T Consensus       119 a~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHhhCCceeEEECCCCc
Confidence            222   2458899998764

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=91.13  E-value=0.041  Score=38.06  Aligned_cols=18  Identities=17%  Similarity=0.409  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 006940          558 LIFLLIICSMVWWKRRQN  575 (624)
Q Consensus       558 ~~~~~~~~~~~~~~~r~~  575 (624)
                      +++++++++++++|||++
T Consensus        23 ~~~ii~~~~~~~~RRr~~   40 (44)
T 2ks1_B           23 LLLVVALGIGLFMRRRHI   40 (44)
T ss_dssp             HHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhhhhHh
Confidence            333444444555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.88  E-value=0.42  Score=49.40  Aligned_cols=100  Identities=8%  Similarity=0.087  Sum_probs=49.1

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      |+.+.+..+ ++..-...|.++.+|+.+.+..+ +...-...|..+.+|+.+++.++.++-.-...+.++.+|+.+.|..
T Consensus       242 L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          242 LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            334444332 33333334555666666665433 3322234556666666666666665522234566666666666654


Q ss_pred             CcCcccCCchhhhccCCCCEEecc
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFT  525 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~  525 (624)
                      + ++ .|+...+....+|+.+.+.
T Consensus       320 ~-l~-~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          320 A-LK-TIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             T-CC-EECTTTTTTCTTCCCCCCC
T ss_pred             c-cc-EEHHHHhhCCCCCCEEEEC
Confidence            3 33 3443333223445544443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.86  E-value=0.87  Score=47.35  Aligned_cols=86  Identities=14%  Similarity=0.253  Sum_probs=47.2

Q ss_pred             cccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccC
Q 006940          438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLL  517 (624)
Q Consensus       438 ~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~  517 (624)
                      ..|.++..|+.+.+. +.++..-...|.++.+|+.++|..+ ++-.-...|.++.+|+.+.|..+ ++ .|+...+....
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~  357 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCT  357 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCT
T ss_pred             cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCC
Confidence            345566666666664 3344233445666667777766543 33222345666667777666543 43 45544444455


Q ss_pred             CCCEEeccCC
Q 006940          518 HRASFNFTDN  527 (624)
Q Consensus       518 ~l~~l~l~~N  527 (624)
                      +|+.+.+.+|
T Consensus       358 ~L~~i~~~~~  367 (394)
T 4gt6_A          358 ALNNIEYSGS  367 (394)
T ss_dssp             TCCEEEESSC
T ss_pred             CCCEEEECCc
Confidence            6666666655

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=87.28  E-value=0.21  Score=34.39  Aligned_cols=19  Identities=11%  Similarity=0.263  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHhhH
Q 006940          558 LIFLLIICSMVWWKRRQNI  576 (624)
Q Consensus       558 ~~~~~~~~~~~~~~~r~~~  576 (624)
                      +++++++++++++|||+++
T Consensus        22 ~v~ii~~~~~~~~RRRr~~   40 (44)
T 2l2t_A           22 ILVIVGLTFAVYVRRKSIK   40 (44)
T ss_dssp             HHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHhhhhhhh
Confidence            3334444445555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=86.63  E-value=0.74  Score=47.88  Aligned_cols=83  Identities=16%  Similarity=0.151  Sum_probs=40.3

Q ss_pred             cccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCC
Q 006940          440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHR  519 (624)
Q Consensus       440 ~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l  519 (624)
                      |..+.+|+.+.+..+ +...-...|.++.+|+.++|..+ ++-.-...+.++++|+.++|..| ++ .|+...+....+|
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L  368 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINL  368 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCC
Confidence            445555555555433 33222344556666666666533 33122344556666666666544 33 3443333334455


Q ss_pred             CEEeccC
Q 006940          520 ASFNFTD  526 (624)
Q Consensus       520 ~~l~l~~  526 (624)
                      +.+.+..
T Consensus       369 ~~i~lp~  375 (394)
T 4fs7_A          369 KKVELPK  375 (394)
T ss_dssp             CEEEEEG
T ss_pred             CEEEECC
Confidence            5555543

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=86.11  E-value=0.1  Score=35.94  Aligned_cols=19  Identities=32%  Similarity=0.349  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHhhH
Q 006940          558 LIFLLIICSMVWWKRRQNI  576 (624)
Q Consensus       558 ~~~~~~~~~~~~~~~r~~~  576 (624)
                      +++++++++++|.||||.+
T Consensus        23 l~vi~~l~~~~~~RRR~~~   41 (44)
T 2jwa_A           23 LVVVLGVVFGILIKRRQQK   41 (44)
T ss_dssp             HHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHhheehhhhh
Confidence            3344444445555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=85.93  E-value=0.74  Score=47.92  Aligned_cols=78  Identities=13%  Similarity=0.128  Sum_probs=58.6

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.+.+..+ ++..-...|.++.+|+.++|..+ ++-.-...|.++.+|+.++|..| ++-.-...+.++.+|+.++|..
T Consensus       299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            556666543 55444567899999999999754 66344678999999999999877 6633346789999999999865


Q ss_pred             C
Q 006940          502 N  502 (624)
Q Consensus       502 N  502 (624)
                      +
T Consensus       376 ~  376 (394)
T 4fs7_A          376 R  376 (394)
T ss_dssp             G
T ss_pred             C
Confidence            4

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=83.97  E-value=1.5  Score=45.54  Aligned_cols=80  Identities=13%  Similarity=0.223  Sum_probs=59.7

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      |+.+.+. ++++..-...|.++.+|+.++|..+ ++-.-...|.+|.+|+.+.|..+ ++-.-...|.++++|+.+++.+
T Consensus       290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred             cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence            5566664 4455444567889999999999765 55344678999999999999765 6523346789999999999988


Q ss_pred             CcC
Q 006940          502 NTL  504 (624)
Q Consensus       502 N~l  504 (624)
                      |..
T Consensus       367 ~~~  369 (394)
T 4gt6_A          367 SRS  369 (394)
T ss_dssp             CHH
T ss_pred             cee
Confidence            754

>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*

Probab=81.53  E-value=5.2  Score=34.21  Aligned_cols=40  Identities=23%  Similarity=0.451  Sum_probs=32.3

Q ss_pred             ccEEEeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEECCeecc
Q 006940          269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAF  313 (624)
Q Consensus       269 ~lt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~  313 (624)
                      .++|...++..|.|.+.++++.-.     ...|.++|+|||..+.
T Consensus        40 ~v~~~V~v~~aG~Y~l~~rya~~~-----~~~~~~~l~VnG~~~~   79 (127)
T 2vzp_A           40 SVEWTVTVPSAGTYDVVVRYANGT-----TTSRPLDFSVNGSISA   79 (127)
T ss_dssp             EEEEEEEESSSEEEEEEEEEECCS-----SSCCCEEEEETTEEEE
T ss_pred             EEEEEEEcCCCCEEEEEEEEEcCC-----CCCeEEEEEECCEEee
Confidence            489999888889999999998521     2468899999998643

>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}

Probab=80.65  E-value=25  Score=30.70  Aligned_cols=90  Identities=19%  Similarity=0.224  Sum_probs=55.5

Q ss_pred             CCCceEEeecCCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEEeecCCCCccc---ceeEEEEEEeeCCeEEEEEe
Q 006940           82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDD---RAFAEALVFLRDGTVSICFH  158 (624)
Q Consensus        82 ~~~~~Y~~~~~~~g~y~vRl~F~~~~y~~~~~~~~Fdv~~~~~~~~~v~~~~~~~~~---~~~~E~~~~~~~~~l~i~f~  158 (624)
                      |..-.|++.+...|.|.|++.+..+.    ...+.++|++||....++.  |...+.   .....+.+..+.+.-.|.|.
T Consensus        38 G~~v~~~V~v~~aG~Y~l~~ryang~----~~~r~~~l~VNG~~~~~v~--~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~  111 (145)
T 2w3j_A           38 GASIVWSLSAASAKTYTAQIRFGNGG----TSARRATVVVNDSQIKTLD--FPTNSNWTQWQTVNVDIPLKAGTNSIKLV  111 (145)
T ss_dssp             TCEEEEEEEESSCEEEEEEEEEECCS----SSCCCEEEEETTEEEEEEC--CCCCSCTTSCEEEEEEEEECSEEEEEEEE
T ss_pred             CCEEEEEEECCCCeEEEEEEEEECCC----CCCeEEEEEECCeEeeEEE--ecCCCCCCeeEEEEEEEEECCCceEEEEE
Confidence            44557888777789999999887432    2346899999997644443  222111   11122233346666666666


Q ss_pred             eC-CCCCCcEeeEEEEEcCC
Q 006940          159 ST-GHGDPAILSLEILQVDD  177 (624)
Q Consensus       159 ~~-~~~~pfIsaIEl~~l~~  177 (624)
                      .. +.+.|-|..|+|.+.+.
T Consensus       112 ~~~~~g~~niD~i~v~~~~~  131 (145)
T 2w3j_A          112 AETADGLANIDSIRVTGNGI  131 (145)
T ss_dssp             ECSTTCCCEEEEEEECSTTE
T ss_pred             EecCcCCEEEEEEEEEcCCC
Confidence            53 34668899999875543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=80.39  E-value=3  Score=42.73  Aligned_cols=90  Identities=9%  Similarity=0.086  Sum_probs=66.1

Q ss_pred             CCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhh
Q 006940          435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG  514 (624)
Q Consensus       435 ~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~  514 (624)
                      .-...+.++..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +...-...+.++++|+.+.+.++.++ .|++..+.
T Consensus       231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~  307 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFM  307 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTT
T ss_pred             EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhc
Confidence            33456778889999988765 55344567888999999999754 44233356788999999999988887 66665555


Q ss_pred             ccCCCCEEeccCC
Q 006940          515 RLLHRASFNFTDN  527 (624)
Q Consensus       515 ~l~~l~~l~l~~N  527 (624)
                      ...+|+.+.+..+
T Consensus       308 ~c~~L~~i~lp~~  320 (379)
T 4h09_A          308 DCVKLSSVTLPTA  320 (379)
T ss_dssp             TCTTCCEEECCTT
T ss_pred             CCCCCCEEEcCcc
Confidence            4677888888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	624
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 1e-13
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 379 LQVLKNS-LDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLP 437
           L  LK     + +     G   +                S+   +  L L    +    P
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324

Query: 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 497
             +S L  LQ +  + N +     SSL  + ++  L   +N  +   P  L  LT + +L
Sbjct: 325 --VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 378

Query: 498 NLNGN 502
            LN  
Sbjct: 379 GLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 5e-10
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           L++L  + L  N+I    P  + ++  L+ L  + N  +     SL  LT +  L+   N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 503 TLSGRVPAALGGRLLHRASFNFTDNA 528
            +S   P      L         D A
Sbjct: 362 QISDLTPL---ANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 6e-04
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500
           + L       L   ++   +  +   +  +  L         SI + +  L  L ++N +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFS 74

Query: 501 GNTLSGRVP 509
            N L+   P
Sbjct: 75  NNQLTDITP 83

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498
            + L  + ++      I+      +  + +L  ++ S N      P  L  LT L  + 
Sbjct: 40  QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 94

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 26/135 (19%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L+   L+      ++ L +L  ++L+ N I    P  L  +  L  L L  N  +   
Sbjct: 224 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 279

Query: 485 P--------------------ESLGQLTALRRLNLNGNTLSGRVPAALGGRL--LHRASF 522
           P                      +  L  L  L L  N +S   P +   +L  L  A+ 
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN 339

Query: 523 NFTDNAGLCGIPGLR 537
             +D + L  +  + 
Sbjct: 340 KVSDVSSLANLTNIN 354

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.1 bits (162), Expect = 1e-12
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 1/119 (0%)

Query: 384 NSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKL 443
           N L       +            +  +                   +    F    +   
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243

Query: 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           ++L  ++L  N I G +P  L  +  L  L++S+N   G IP+  G L          N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 35/136 (25%)

Query: 373 PEEVRALQVLKNSLDLPHRF-GWN--GDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDN 429
           P++ +AL  +K  L  P     W    D C      W G  C                  
Sbjct: 5   PQDKQALLQIKKDLGNPTTLSSWLPTTDCC---NRTWLGVLC------------------ 43

Query: 430 QGLRGFLPNGISKLRHLQSINLSGNSIRGA--IPSSLGTIASLEVLDLSYN-FFNGSIPE 486
                   +  ++   + +++LSG ++     IPSSL  +  L  L +       G IP 
Sbjct: 44  --------DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 487 SLGQLTALRRLNLNGN 502
           ++ +LT L  L +   
Sbjct: 96  AIAKLTQLHYLYITHT 111

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 428 DNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES 487
            + GL   +P  +        ++L  N I          + +L  L L  N  +   P +
Sbjct: 18  SDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74

Query: 488 LGQLTALRRLNLNGNTLSG 506
              L  L RL L+ N L  
Sbjct: 75  FAPLVKLERLYLSKNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTL 504
           HL+ +  S   +   +P  L       +LDL  N            L  L  L L  N +
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 505 SGRVPAALGG 514
           S   P A   
Sbjct: 68  SKISPGAFAP 77

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 4/131 (3%)

Query: 377 RALQVLKNSL-DLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGF 435
             L + KN L +LP +           ++  +          ++ ++  LG +     G 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
                  ++ L  I ++  +I   IP  L    SL  L L  N        SL  L  L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 496 RLNLNGNTLSG 506
           +L L+ N++S 
Sbjct: 199 KLGLSFNSISA 209

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 18/80 (22%), Positives = 27/80 (33%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
           L L N  +          L++L ++ L  N I    P +   +  LE L LS N      
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 485 PESLGQLTALRRLNLNGNTL 504
            +    L  LR        +
Sbjct: 96  EKMPKTLQELRVHENEITKV 115

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (132), Expect = 8e-09
 Identities = 21/134 (15%), Positives = 38/134 (28%), Gaps = 10/134 (7%)

Query: 389 PHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWV-IDGLGLDNQGLRGFLPNGISKLRHLQ 447
                W              +           + I    L++ G+R            L+
Sbjct: 313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 372

Query: 448 SINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ-----LTALRRLN 498
            + L+   +      ++ ++L    SL  LDLS N    +    L +        L +L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 499 LNGNTLSGRVPAAL 512
           L     S  +   L
Sbjct: 433 LYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 6e-08
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 446 LQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNG----SIPESLGQLTALRRLNLN 500
           +QS+++    +  A     L  +   +V+ L            I  +L    AL  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 501 GNTLSGRVPAALGGRLLH 518
            N L       +   L  
Sbjct: 64  SNELGDVGVHCVLQGLQT 81

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 1e-07
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 9/72 (12%)

Query: 440 ISKLRHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL---- 491
           +  L+  Q + L    +       I S+L    +L  L+L  N         + Q     
Sbjct: 23  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82

Query: 492 -TALRRLNLNGN 502
              +++L+L   
Sbjct: 83  SCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-04
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 469 SLEVLDLSYNFFNG----SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRAS 521
            L VL L+    +     S+  +L    +LR L+L+ N L       L   +     
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 469 SLEVLDLSYNFFNGS-IPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518
            ++ LD+     + +   E L  L   + + L+   L+      +   L  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV 53

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 389 PHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQS 448
            +                +  D   +  S    +             + +       L+ 
Sbjct: 229 LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE 288

Query: 449 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSG 506
           +N+S N +   +P+       LE L  S+N     +PE       L++L++  N L  
Sbjct: 289 LNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLRE 338

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           +SK+     +N    ++  A+P  L       +L LS N        +L   T L +LNL
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 500 NGN 502
           +  
Sbjct: 63  DRA 65

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 411 CQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASL 470
           C+  + +    ++    D + L   LP  + K      ++LS N +     ++L     L
Sbjct: 4   CEVSKVASHLEVN---CDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRL 57

Query: 471 EVLDLSYNFFN 481
             L+L      
Sbjct: 58  TQLNLDRAELT 68

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 24/104 (23%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS---------------------S 463
           L L ++ L       + +L  +  ++LS N +R   P+                      
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 464 LGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNLNGNTLSG 506
           +  +  L+ L L  N     +  + L     L  LNL GN+L  
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 472 VLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLC 531
           VL L++     ++   L QL  +  L+L+ N L    PA    R L     +      + 
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 532 G 532
           G
Sbjct: 60  G 60

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 431 GLRGFLPNGISKL--RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPES 487
             +   P+   +L  + + +     + +   +         ++ +DLS +     ++   
Sbjct: 8   TGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGI 66

Query: 488 LGQLTALRRLNLNGNTLSGRVPAALG 513
           L Q + L+ L+L G  LS  +   L 
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLA 92

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 403 QHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSG-NSIRGAIP 461
           +     +D          ++     D+  L+        +L +LQ ++LS    I     
Sbjct: 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 218

Query: 462 SSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHR 519
             LG I +L+ L +     +G++        AL  L +N +  +      +G +    
Sbjct: 219 LELGEIPTLKTLQVFGIVPDGTLQLL---KEALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGS 483
                  +   L    S  R +Q ++LS + I    +   L   + L+ L L     +  
Sbjct: 28  FRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP 86

Query: 484 IPESLGQLTALRRLN 498
           I  +L + + L RLN
Sbjct: 87  IVNTLAKNSNLVRLN 101

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 7/119 (5%)

Query: 390 HRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFL-PNGISKLRHLQS 448
                  +              +      +  ++   L  +G    +      +   LQ+
Sbjct: 218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 277

Query: 449 INLSGNSIRGAIPSSLGTIA-----SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
           + L  N I      +L T+       L  L+L+ N F     + + ++  +      G 
Sbjct: 278 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 445 HLQSINLSGNSIRGAIPSSLGTI------ASLEVLDLSYNFFNGSIPESL-----GQLTA 493
           +L+ + L+   +     +++           L+ L L YN        +L      ++  
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 494 LRRLNLNGNTLS 505
           L  L LNGN  S
Sbjct: 304 LLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 436 LPNGISKLRHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
           +   + +   ++ I LSGN+I       +  ++ +   LE+ + S  F      E    L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 492 TALRRLNLNGNTL 504
             L +  L    L
Sbjct: 83  RLLLQALLKCPKL 95

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 436 LPNGISKLRHLQSINLSGNSIRG--AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTA 493
           L      +  L S+NLS N +     + S +    +L++L+LS N           +   
Sbjct: 57  LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 116

Query: 494 LRRLNLNGNTLSGRVPAALGGRLLHRASF 522
           L  L L+GN+LS             R  F
Sbjct: 117 LEELWLDGNSLSDTFRDQSTYISAIRERF 145

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
           ++ L  L ++    N I    P  L ++ +L  + L  N  +   P  L   + L  + L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 500 N 500
            
Sbjct: 225 T 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 388 LPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQ 447
           + +     G   +      +         ++   +  L  D+  +    P  ++ L +L 
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLI 198

Query: 448 SINLSGNSIRGAIPSSLGTIASLEVLDLS 476
            ++L  N I    P  L   ++L ++ L+
Sbjct: 199 EVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 14/122 (11%), Positives = 33/122 (27%)

Query: 382 LKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGIS 441
           +K+  D+             Q +       +       +    L L+  G++       +
Sbjct: 115 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN 174

Query: 442 KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501
             +  +      N++           +   +LD+S    +      L  L  LR  +   
Sbjct: 175 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234

Query: 502 NT 503
             
Sbjct: 235 LK 236

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500
            + R L   +L G  I   I +   T+   + +D S N       +    L  L+ L +N
Sbjct: 18  VRDREL---DLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVN 71

Query: 501 GNTLSGRVP 509
            N +     
Sbjct: 72  NNRICRIGE 80

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 28/161 (17%), Positives = 41/161 (25%), Gaps = 7/161 (4%)

Query: 379 LQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQF-----DRTSHKWVIDGLGLDNQGLR 433
           L  L          G      +         D        D       +  L L    + 
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 434 GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTA 493
                    L  L  + L  N +    P +   +  L  L L  N  +    E+L  L A
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 494 LRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534
           L+ L LN N                   F  + +   C +P
Sbjct: 227 LQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSLP 265

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	624
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.48
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.32
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.2
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.19
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.18
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.99
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.76
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.76
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.55
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.51
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.44
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.33
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.32
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.3
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.24
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.03
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.96
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.94
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.91
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.61
d2o14a1	146	Hypothetical protein YxiM {Bacillus subtilis [TaxI	97.5
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.46
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.43
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.31
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.18
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.02
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.02
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.94
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.9
d2o14a1	146	Hypothetical protein YxiM {Bacillus subtilis [TaxI	96.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.73
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.34
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	81.4

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=1.8e-19  Score=183.93  Aligned_cols=155  Identities=26%  Similarity=0.498  Sum_probs=135.7

Q ss_pred             CChHHHHHHHHhhhccCCCCC-CCCC--CCCCCCCCCCCCCcccccCCCCceeEEEEEEcCCCCCcc--CCCcccccccc
Q 006940          371 TLPEEVRALQVLKNSLDLPHR-FGWN--GDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRG--FLPNGISKLRH  445 (624)
Q Consensus       371 ~~~~~~~aL~~~k~~~~~~~~-~~W~--~~~c~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g--~~p~~~~~L~~  445 (624)
                      +.++|..||++||+++.++.. .+|.  +|+|.   +.|.||+|+...  ...+|+.|+|++|++.|  .+|.++++|++
T Consensus         3 c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~---~~w~gv~C~~~~--~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~   77 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCC---CcCCCeEEeCCC--CcEEEEEEECCCCCCCCCCCCChHHhcCcc
Confidence            578999999999999987643 4784  47774   369999997533  33479999999999998  58999999999


Q ss_pred             cccccCcC-ccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEec
Q 006940          446 LQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNF  524 (624)
Q Consensus       446 L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l  524 (624)
                      |++|+|++ |+++|.+|..|++|++|++|+|++|++.+..|..+..+..|+.++++.|++.+.+|..+.. +..++.+++
T Consensus        78 L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~-l~~L~~l~l  156 (313)
T d1ogqa_          78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITF  156 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEEC
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhcc-Ccccceeec
Confidence            99999997 8999999999999999999999999999999999999999999999999999999998876 788999999


Q ss_pred             cCCCCCC
Q 006940          525 TDNAGLC  531 (624)
Q Consensus       525 ~~N~~lc  531 (624)
                      ++|....
T Consensus       157 ~~n~l~~  163 (313)
T d1ogqa_         157 DGNRISG  163 (313)
T ss_dssp             CSSCCEE
T ss_pred             ccccccc
Confidence            9987543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.48  E-value=2.6e-14  Score=134.71  Aligned_cols=129  Identities=22%  Similarity=0.261  Sum_probs=108.3

Q ss_pred             CCCCCcccccCCC-----CceeEEEEEEcCCCCCccCC-CcccccccccccccCcCccccccCCCCcCCCccCCeEeccC
Q 006940          404 HPWSGADCQFDRT-----SHKWVIDGLGLDNQGLRGFL-PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY  477 (624)
Q Consensus       404 ~~w~gv~C~~~~~-----~~~~~l~~L~L~~n~l~g~~-p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~  477 (624)
                      |.|..|.|+..+-     ..+..++.|+|++|.|++.+ +..|.++++|+.|+|++|++.+..+..+..+++|+.|+|++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            3577788864321     11235789999999998765 55789999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       478 N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      |++++..|..|.++++|++|+|++|+|++..|..+. .+.+|+.+++++|++.|.+
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~-~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST-TCTTCCEEECTTCCBCCSG
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhc-CCccccccccccccccccc
Confidence            999987788899999999999999999955444444 4789999999999988864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.32  E-value=2.8e-13  Score=137.27  Aligned_cols=114  Identities=32%  Similarity=0.445  Sum_probs=103.3

Q ss_pred             EEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCC
Q 006940          423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN  502 (624)
Q Consensus       423 ~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N  502 (624)
                      ..+++.++.+.|.+|..+..+++|+.|++++|.+++.+| .++.+++|+.|+|++|+|+|.+|+.++++++|+.|+|++|
T Consensus       200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            458899999999999999999999999999999998776 6899999999999999999999999999999999999999


Q ss_pred             cCcccCCchhhhccCCCCEEeccCCCCCCCCCCCCCCC
Q 006940          503 TLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  540 (624)
Q Consensus       503 ~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~~~~~c~  540 (624)
                      +|+|.+|+. + .+.+|+.+++++|+.+||.| ++.|.
T Consensus       279 ~l~g~iP~~-~-~L~~L~~l~l~~N~~l~g~p-lp~c~  313 (313)
T d1ogqa_         279 NLCGEIPQG-G-NLQRFDVSAYANNKCLCGSP-LPACT  313 (313)
T ss_dssp             EEEEECCCS-T-TGGGSCGGGTCSSSEEESTT-SSCCC
T ss_pred             cccccCCCc-c-cCCCCCHHHhCCCccccCCC-CCCCC
Confidence            999999963 3 36789999999999999976 45673

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=1.3e-11  Score=107.28  Aligned_cols=99  Identities=27%  Similarity=0.352  Sum_probs=85.0

Q ss_pred             EEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCc
Q 006940          424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT  503 (624)
Q Consensus       424 ~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~  503 (624)
                      .|+|++|+|+ .++ .+..|++|+.|+|++|+++ .+|..++.+++|+.|++++|.++ .+| .+..+++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            5899999998 444 5899999999999999998 67888999999999999999999 566 48999999999999999


Q ss_pred             CcccCC--chhhhccCCCCEEeccCCCC
Q 006940          504 LSGRVP--AALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       504 l~g~iP--~~~~~~l~~l~~l~l~~N~~  529 (624)
                      ++. +|  ..+.. +.+|+.+++++|+.
T Consensus        77 i~~-~~~~~~l~~-~~~L~~L~l~~N~i  102 (124)
T d1dcea3          77 LQQ-SAAIQPLVS-CPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCS-SSTTGGGGG-CTTCCEEECTTSGG
T ss_pred             cCC-CCCchhhcC-CCCCCEEECCCCcC
Confidence            983 44  33443 78899999999983

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.4e-11  Score=110.04  Aligned_cols=106  Identities=16%  Similarity=0.146  Sum_probs=87.0

Q ss_pred             EEcCCCCCccCCCcccccccccccccCcCcc-ccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCc
Q 006940          425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT  503 (624)
Q Consensus       425 L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~  503 (624)
                      ++++++++. .+|..+..+++|+.|+|++|+ ++..-+..|.+|++|+.|+|++|+|+...|..+..+++|+.|+|++|+
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            344444444 457778889999999998765 886556789999999999999999997778889999999999999999


Q ss_pred             CcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          504 LSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       504 l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      ++ .+|...... ..++.|++++|++.|.+
T Consensus        92 l~-~l~~~~~~~-~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          92 LE-SLSWKTVQG-LSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             CS-CCCSTTTCS-CCCCEEECCSSCCCCCG
T ss_pred             Cc-ccChhhhcc-ccccccccCCCcccCCc
Confidence            99 777776653 46899999999998864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.1e-11  Score=120.36  Aligned_cols=110  Identities=25%  Similarity=0.271  Sum_probs=101.5

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|++++|.+....+..+..+.+|+.|++++|.+....+..+..++.|+.|++++|++++..+..+..+++|+.|+|++
T Consensus       102 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeeccc
Confidence            77899999999988888899999999999999999977777888899999999999999988888899999999999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      |+|+ .+|+.+.. +..|+.|++++|++.|+|
T Consensus       182 N~L~-~lp~~~~~-~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         182 NSLY-TIPKGFFG-SHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             SCCC-CCCTTTTT-TCCCSEEECCSCCBCCSG
T ss_pred             CCCc-ccChhHCC-CCCCCEEEecCCCCCCCc
Confidence            9999 89998876 688999999999999974

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.2e-11  Score=123.24  Aligned_cols=111  Identities=25%  Similarity=0.291  Sum_probs=101.6

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.+++++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+..+++|+.|++++
T Consensus       131 L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~  210 (284)
T d1ozna_         131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (284)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccc
Confidence            67899999999987778899999999999999999988889999999999999999999999999999999999999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGI  533 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~  533 (624)
                      |++.+..|..+.. +.+|+.|++++|++.|.|
T Consensus       211 N~i~~~~~~~~~~-~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         211 NNLSALPTEALAP-LRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             SCCSCCCHHHHTT-CTTCCEEECCSSCEECSG
T ss_pred             ccccccccccccc-ccccCEEEecCCCCCCCc
Confidence            9999766666654 788999999999998864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.18  E-value=1.7e-11  Score=114.88  Aligned_cols=89  Identities=26%  Similarity=0.361  Sum_probs=82.8

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .|+.|+|++|.+.+..+..+..+++|+.|+|++|+|++..|..|.+|++|+.|+|++|+|++..|+.+..+++|++|+|+
T Consensus        55 ~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             eEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccc
Confidence            48889999999999999999999999999999999998888889999999999999999998888889999999999999


Q ss_pred             CCcCcccCC
Q 006940          501 GNTLSGRVP  509 (624)
Q Consensus       501 ~N~l~g~iP  509 (624)
                      +|++....+
T Consensus       135 ~N~~~~~~~  143 (192)
T d1w8aa_         135 SNPFNCNCH  143 (192)
T ss_dssp             TCCBCCSGG
T ss_pred             ccccccccc
Confidence            999986543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3.3e-10  Score=103.00  Aligned_cols=104  Identities=20%  Similarity=0.147  Sum_probs=86.1

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|+|+.. +..+..+++|+.|+|++|.++ .++ .+..+++|+.|+|++|+++...+..+..+++|+.|+|+
T Consensus        19 ~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            377899999999864 666688999999999999998 554 58999999999999999995545556789999999999


Q ss_pred             CCcCcccCCc--hhhhccCCCCEEeccCCCC
Q 006940          501 GNTLSGRVPA--ALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       501 ~N~l~g~iP~--~~~~~l~~l~~l~l~~N~~  529 (624)
                      +|+++ .++.  .+. .+++|+.+++++|+.
T Consensus        96 ~N~i~-~~~~l~~l~-~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          96 NNSLV-ELGDLDPLA-SLKSLTYLCILRNPV  124 (162)
T ss_dssp             SCCCC-CGGGGGGGG-GCTTCCEEECCSSGG
T ss_pred             ccccc-ccccccccc-cccccchhhcCCCcc
Confidence            99998 4443  333 378899999999973

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=9.9e-10  Score=95.04  Aligned_cols=99  Identities=27%  Similarity=0.379  Sum_probs=81.4

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCC-ccccCCCCCCCEEec
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNL  499 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~i-P~~l~~l~~L~~L~L  499 (624)
                      .++.|++++|.|+ .+|+.+..+++|+.|+|++|.++. +| .+..+++|+.|++++|+++... ...+..+++|+.|++
T Consensus        21 ~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          21 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence            3888999999998 578889999999999999999994 55 5899999999999999998432 256889999999999


Q ss_pred             cCCcCccc--CCchhhhccCCCCEE
Q 006940          500 NGNTLSGR--VPAALGGRLLHRASF  522 (624)
Q Consensus       500 s~N~l~g~--iP~~~~~~l~~l~~l  522 (624)
                      ++|+++..  ++..+...+++++.+
T Consensus        98 ~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          98 QGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCcCCcCccHHHHHHHHCcCcceE
Confidence            99999742  344455556666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.90  E-value=1.4e-09  Score=108.84  Aligned_cols=108  Identities=20%  Similarity=0.218  Sum_probs=96.2

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|++++|.+.+..+..+.+++.++.|++++|.+.+..+..+.++++|++|+|++|.|+ .+|+.+..+++|++|+|++
T Consensus       173 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred             cCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCC
Confidence            778999999999999999999999999999999999888999999999999999999998 7899999999999999999


Q ss_pred             CcCcccCCchhh------hccCCCCEEeccCCCCCC
Q 006940          502 NTLSGRVPAALG------GRLLHRASFNFTDNAGLC  531 (624)
Q Consensus       502 N~l~g~iP~~~~------~~l~~l~~l~l~~N~~lc  531 (624)
                      |+++ .++...+      ..+..|+.|++++|++.+
T Consensus       252 N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         252 NNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CccC-ccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            9998 5554322      235678999999999765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.3e-09  Score=105.15  Aligned_cols=110  Identities=23%  Similarity=0.228  Sum_probs=99.4

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|.+....+..+..+.+|+.+++++|++++..+..|..+++|+.|+|++|++++..|..+.++++|+.|+++
T Consensus       106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhh
Confidence            37889999999988888889999999999999999997777889999999999999999998888899999999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC  531 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc  531 (624)
                      +|++++..|..+.. +.+++.|++++|....
T Consensus       186 ~N~l~~i~~~~f~~-l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         186 QNRVAHVHPHAFRD-LGRLMTLYLFANNLSA  215 (284)
T ss_dssp             SSCCCEECTTTTTT-CTTCCEEECCSSCCSC
T ss_pred             hccccccChhHhhh-hhhccccccccccccc
Confidence            99999888887765 7889999999998543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.2e-08  Score=100.10  Aligned_cols=108  Identities=24%  Similarity=0.255  Sum_probs=94.1

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .|+.|+|++|.+++ ++..+..+++|+.|+|++|.+....+..+..+.+|+.|++++|.++...+..+..+++|+.|+++
T Consensus        78 ~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_          78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             TCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cccccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccc
Confidence            37889999999986 46688999999999999999998888888999999999999999997777788899999999999


Q ss_pred             CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940          501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      +|++++..|..+.. +.+|+.|++++|...
T Consensus       157 ~N~l~~~~~~~~~~-l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         157 NNNLTELPAGLLNG-LENLDTLLLQENSLY  185 (266)
T ss_dssp             TSCCSCCCTTTTTT-CTTCCEEECCSSCCC
T ss_pred             cccccccCcccccc-ccccceeecccCCCc
Confidence            99999655555544 789999999999844

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=8e-09  Score=92.96  Aligned_cols=100  Identities=25%  Similarity=0.310  Sum_probs=81.2

Q ss_pred             CCCCcccccCCC-------CceeEEEEEEcCCCC-CccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEecc
Q 006940          405 PWSGADCQFDRT-------SHKWVIDGLGLDNQG-LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLS  476 (624)
Q Consensus       405 ~w~gv~C~~~~~-------~~~~~l~~L~L~~n~-l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs  476 (624)
                      .+.+++|...+.       .....++.|++.+|+ |+..-+..|.+|++|+.|+|++|+|+...|..|..+++|+.|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            466788864322       112357889998765 887777789999999999999999998778889999999999999


Q ss_pred             CCCCCCCCccccCCCCCCCEEeccCCcCc
Q 006940          477 YNFFNGSIPESLGQLTALRRLNLNGNTLS  505 (624)
Q Consensus       477 ~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  505 (624)
                      +|+|+ .+|..+....+|+.|+|++|+|.
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCccc
Confidence            99999 66655555557999999999995

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=7.8e-09  Score=93.65  Aligned_cols=87  Identities=21%  Similarity=0.279  Sum_probs=74.6

Q ss_pred             ccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCC
Q 006940          439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH  518 (624)
Q Consensus       439 ~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~  518 (624)
                      .+.++.+|+.|+|++|+++ .+|..+..+++|+.|||++|.++ .++ .+..+++|+.|+|++|+++ .+|..+...+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCccccccccc
Confidence            4667889999999999998 56776788999999999999998 554 5889999999999999998 566655555889


Q ss_pred             CCEEeccCCCC
Q 006940          519 RASFNFTDNAG  529 (624)
Q Consensus       519 l~~l~l~~N~~  529 (624)
                      |+.|++++|..
T Consensus        89 L~~L~L~~N~i   99 (162)
T d1a9na_          89 LTELILTNNSL   99 (162)
T ss_dssp             CCEEECCSCCC
T ss_pred             cccceeccccc
Confidence            99999999974

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.55  E-value=5.4e-08  Score=96.98  Aligned_cols=102  Identities=26%  Similarity=0.380  Sum_probs=91.4

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.+++++|++.. +|..  .+++|+.|++++|...+..+..+..++.++.|++++|.+++..|..+.++++|+.|+|++
T Consensus       152 L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         152 LSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN  228 (305)
T ss_dssp             CCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred             cCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccc
Confidence            6779999999874 4543  367999999999999999999999999999999999999988889999999999999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |+++ .+|..+.. +++|+.|++++|+
T Consensus       229 N~L~-~lp~~l~~-l~~L~~L~Ls~N~  253 (305)
T d1xkua_         229 NKLV-KVPGGLAD-HKYIQVVYLHNNN  253 (305)
T ss_dssp             SCCS-SCCTTTTT-CSSCCEEECCSSC
T ss_pred             cccc-cccccccc-ccCCCEEECCCCc
Confidence            9998 78988876 7899999999997

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.51  E-value=7e-08  Score=98.77  Aligned_cols=98  Identities=26%  Similarity=0.365  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.+.+..|.+.+  ...+..+++|+.|+|++|++++..  .+..+++|+.|+|++|+++ .+| .++++++|+.|+|++
T Consensus       287 l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~  360 (384)
T d2omza2         287 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGH  360 (384)
T ss_dssp             CSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCS
T ss_pred             ccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCC
Confidence            4557788888776  345788889999999999998653  3788999999999999998 455 588899999999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++++..|  +.+ +++|+.|++++|.
T Consensus       361 N~l~~l~~--l~~-l~~L~~L~L~~Na  384 (384)
T d2omza2         361 NQISDLTP--LAN-LTRITQLGLNDQA  384 (384)
T ss_dssp             SCCCBCGG--GTT-CTTCSEEECCCEE
T ss_pred             CcCCCChh--hcc-CCCCCEeeCCCCc
Confidence            99986543  444 6789999998873

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.44  E-value=2.1e-09  Score=100.90  Aligned_cols=101  Identities=22%  Similarity=0.322  Sum_probs=81.7

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|+|++|+|+. ++ .+.+|++|+.|+|++|.++ .+|.....+++|+.|++++|+++. ++ .+..+++|+.|+|+
T Consensus        49 ~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~  123 (198)
T d1m9la_          49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMS  123 (198)
T ss_dssp             TCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHHSSEEEES
T ss_pred             ccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-cccccccccccccc
Confidence            37889999999984 44 5889999999999999998 667656667789999999999984 43 47788999999999


Q ss_pred             CCcCcccCCc--hhhhccCCCCEEeccCCC
Q 006940          501 GNTLSGRVPA--ALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       501 ~N~l~g~iP~--~~~~~l~~l~~l~l~~N~  528 (624)
                      +|+++ .++.  .+. .+++|+.|++++|+
T Consensus       124 ~N~i~-~~~~~~~l~-~l~~L~~L~L~~N~  151 (198)
T d1m9la_         124 NNKIT-NWGEIDKLA-ALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEECC-CHHHHHHHT-TTTTCSEEEECSSH
T ss_pred             cchhc-ccccccccc-CCCccceeecCCCc
Confidence            99997 3342  333 37889999999997

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.42  E-value=3.2e-07  Score=85.44  Aligned_cols=98  Identities=32%  Similarity=0.489  Sum_probs=62.2

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|.+++..|  +.+|++|+.|++++|.+. .++ .+..++.|+.|++++|.+...  +.+..+++|+.|++++
T Consensus        64 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~  137 (199)
T d2omxa2          64 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSS  137 (199)
T ss_dssp             CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCS
T ss_pred             cCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccccccccccccccccccccc--cccchhhhhHHhhhhh
Confidence            6667777777765432  667777777777777765 333 366777777777777766532  2356677777777777


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++. .+| .+.. +.+++.|++.+|.
T Consensus       138 n~l~-~~~-~l~~-~~~L~~L~l~~n~  161 (199)
T d2omxa2         138 NTIS-DIS-ALSG-LTSLQQLNFSSNQ  161 (199)
T ss_dssp             SCCC-CCG-GGTT-CTTCSEEECCSSC
T ss_pred             hhhc-ccc-cccc-ccccccccccccc
Confidence            7765 333 2332 5567777777664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.33  E-value=5.6e-07  Score=84.53  Aligned_cols=99  Identities=26%  Similarity=0.392  Sum_probs=57.4

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCc----------------
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP----------------  485 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP----------------  485 (624)
                      ++.|+|++|.+++. + .++.|++|+.|+|++|++++ +| .+..+++|+.|++++|.+. .++                
T Consensus        70 L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~~~l~~l~~l~~l~~~~n  144 (210)
T d1h6ta2          70 VTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNN  144 (210)
T ss_dssp             CCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCGGGGGCTTCCEEECCSS
T ss_pred             CCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccccccccccc-ccccccccccccccccccc
Confidence            66677777776653 2 25667777777777777663 33 3566666666666666554 222                


Q ss_pred             -----cccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940          486 -----ESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       486 -----~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                           ..+..+++|+.+++++|++++ ++. +.. +++|+.|++++|.
T Consensus       145 ~l~~~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~-l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         145 KITDITVLSRLTKLDTLSLEDNQISD-IVP-LAG-LTKLQNLYLSKNH  189 (210)
T ss_dssp             CCCCCGGGGGCTTCSEEECCSSCCCC-CGG-GTT-CTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccccc-ccc-ccC-CCCCCEEECCCCC
Confidence                 223445566666666666653 332 332 5566666666664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.32  E-value=6.7e-07  Score=83.21  Aligned_cols=98  Identities=23%  Similarity=0.410  Sum_probs=58.5

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|++++|.+... + .+.+++.|+.|++++|.+...  ..+..+++|+.|++++|++. .+| .+..+++|+.|++++
T Consensus        86 L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~  159 (199)
T d2omxa2          86 LVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSS  159 (199)
T ss_dssp             CCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCS
T ss_pred             cccccccccccccc-c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc-ccccccccccccccc
Confidence            56666666665432 2 356666677777766666532  23556666777777776665 333 356666677777777


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |++++ ++. +.+ +++|+.|++++|+
T Consensus       160 n~l~~-l~~-l~~-l~~L~~L~ls~N~  183 (199)
T d2omxa2         160 NQVTD-LKP-LAN-LTTLERLDISSNK  183 (199)
T ss_dssp             SCCCC-CGG-GTT-CTTCCEEECCSSC
T ss_pred             ccccC-Ccc-ccC-CCCCCEEECCCCC
Confidence            76663 332 333 5666667766665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.32  E-value=7.8e-07  Score=83.50  Aligned_cols=98  Identities=27%  Similarity=0.364  Sum_probs=79.2

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|++++|.++...  .+..|++|+.|+|++|++++. + .++.|++|+.|++++|+++ .+| .+.++++|+.|++++
T Consensus        48 L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          48 IDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             CCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTT
T ss_pred             ccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc-ccc-ccccccccccccccc
Confidence            678999999988643  488999999999999999964 4 4789999999999999998 466 488899999999999


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |.+. .++ .+.. +..++.+++++|.
T Consensus       122 ~~~~-~~~-~l~~-l~~l~~l~~~~n~  145 (210)
T d1h6ta2         122 NGIS-DIN-GLVH-LPQLESLYLGNNK  145 (210)
T ss_dssp             SCCC-CCG-GGGG-CTTCCEEECCSSC
T ss_pred             cccc-ccc-cccc-ccccccccccccc
Confidence            9886 444 3333 5667777777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.30  E-value=5.3e-07  Score=85.59  Aligned_cols=95  Identities=21%  Similarity=0.295  Sum_probs=72.9

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      +..+.++++.+...  ..+.++++|+.|++++|.+....  .+.++++|+.|+|++|++++ +|. ++++++|++|+|++
T Consensus       131 ~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~  204 (227)
T d1h6ua2         131 LQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKN  204 (227)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTT
T ss_pred             hhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcC
Confidence            44577777777643  34677888999999999887543  37889999999999999984 554 78889999999999


Q ss_pred             CcCcccCCchhhhccCCCCEEecc
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFT  525 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~  525 (624)
                      |+++ .+|+ +.. +.+|+.|+++
T Consensus       205 N~lt-~i~~-l~~-l~~L~~L~ls  225 (227)
T d1h6ua2         205 NQIS-DVSP-LAN-TSNLFIVTLT  225 (227)
T ss_dssp             SCCC-BCGG-GTT-CTTCCEEEEE
T ss_pred             CcCC-CCcc-ccc-CCCCCEEEee
Confidence            9998 4553 443 6788888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.24  E-value=3.6e-07  Score=93.26  Aligned_cols=75  Identities=24%  Similarity=0.362  Sum_probs=66.7

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++|++++..  .+..+++|+.|+|++|++++ ++ .+.+|++|+.|+|++|++++..|  +.++++|+.|+|++
T Consensus       309 l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~  382 (384)
T d2omza2         309 LTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND  382 (384)
T ss_dssp             CSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCC
T ss_pred             cCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCC
Confidence            678999999999753  38899999999999999984 55 69999999999999999996654  88999999999998


Q ss_pred             C
Q 006940          502 N  502 (624)
Q Consensus       502 N  502 (624)
                      |
T Consensus       383 N  383 (384)
T d2omza2         383 Q  383 (384)
T ss_dssp             E
T ss_pred             C
Confidence            8

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=5.4e-07  Score=86.20  Aligned_cols=103  Identities=17%  Similarity=0.155  Sum_probs=79.7

Q ss_pred             CCCCCcccccCCC-----CceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCC-CCcCCCccCCeEecc-
Q 006940          404 HPWSGADCQFDRT-----SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLS-  476 (624)
Q Consensus       404 ~~w~gv~C~~~~~-----~~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~LdLs-  476 (624)
                      |....+.|...+.     .....++.|+|++|.|+...+..|.+|++|+.|+|++|.+...++ ..|..++.++.|++. 
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4566677763221     112357889999999987666678999999999999999876654 467889999999876 


Q ss_pred             CCCCCCCCccccCCCCCCCEEeccCCcCcc
Q 006940          477 YNFFNGSIPESLGQLTALRRLNLNGNTLSG  506 (624)
Q Consensus       477 ~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g  506 (624)
                      .|++....+..+.++++|+.|++++|.+..
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             cccccccccccccccccccccccchhhhcc
Confidence            467877777888999999999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.03  E-value=9.9e-08  Score=89.12  Aligned_cols=89  Identities=21%  Similarity=0.304  Sum_probs=74.3

Q ss_pred             CCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhh
Q 006940          435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG  514 (624)
Q Consensus       435 ~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~  514 (624)
                      .++..+..|++|+.|+|++|+++ .++ .+..|++|+.|+|++|.++ .+|.....+++|+.|++++|+++ .++. +..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~~-~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSG-IEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHHH-HHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-cccc-ccc
Confidence            35567899999999999999998 565 5899999999999999998 67766666778999999999998 4443 443


Q ss_pred             ccCCCCEEeccCCCC
Q 006940          515 RLLHRASFNFTDNAG  529 (624)
Q Consensus       515 ~l~~l~~l~l~~N~~  529 (624)
                       +.+|+.|++++|..
T Consensus       114 -l~~L~~L~L~~N~i  127 (198)
T d1m9la_         114 -LVNLRVLYMSNNKI  127 (198)
T ss_dssp             -HHHSSEEEESEEEC
T ss_pred             -cccccccccccchh
Confidence             67899999999863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.96  E-value=2.8e-06  Score=80.45  Aligned_cols=75  Identities=19%  Similarity=0.313  Sum_probs=63.9

Q ss_pred             EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940          421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN  500 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls  500 (624)
                      .++.|++++|.+....  .+.+|++|+.|+|++|++++ ++ .+.++++|+.|+|++|+++ .+|. ++++++|+.|+|+
T Consensus       152 ~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEE
T ss_pred             ccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC-CCcc-cccCCCCCEEEee
Confidence            3788999999987543  48899999999999999985 44 4889999999999999999 4553 8899999999997


Q ss_pred             C
Q 006940          501 G  501 (624)
Q Consensus       501 ~  501 (624)
                      +
T Consensus       226 n  226 (227)
T d1h6ua2         226 N  226 (227)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=4.3e-06  Score=79.62  Aligned_cols=102  Identities=15%  Similarity=0.186  Sum_probs=81.1

Q ss_pred             EEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCc-cccCCCCCCCEEecc-C
Q 006940          424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLNLN-G  501 (624)
Q Consensus       424 ~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP-~~l~~l~~L~~L~Ls-~  501 (624)
                      .++.++.+++ .+|..+.  ++++.|+|++|+++...+..|.++++|++|+|++|.+...+| ..+.+++.++.|.+. .
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            4777888887 6777653  578999999999996556679999999999999999987665 467889999999876 4


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNAG  529 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~  529 (624)
                      |++....+..+.. +.+|+.+++.+|..
T Consensus        89 n~l~~~~~~~~~~-l~~L~~l~l~~~~l  115 (242)
T d1xwdc1          89 NNLLYINPEAFQN-LPNLQYLLISNTGI  115 (242)
T ss_dssp             TTCCEECTTSEEC-CTTCCEEEEESCCC
T ss_pred             ccccccccccccc-cccccccccchhhh
Confidence            6777555554444 78899999999863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.91  E-value=1.9e-05  Score=78.80  Aligned_cols=92  Identities=26%  Similarity=0.339  Sum_probs=62.1

Q ss_pred             EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940          422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG  501 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~  501 (624)
                      ++.|+|++++|+ .+|+.   +++|+.|+|++|+|+ .+|..+   .+|+.|++++|+++ .+++.   .+.|++|+|++
T Consensus        40 l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          40 AHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             CSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECCS
T ss_pred             CCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccccc
Confidence            556888888876 46653   456778888888887 667543   46777778887776 44431   13577888888


Q ss_pred             CcCcccCCchhhhccCCCCEEeccCCC
Q 006940          502 NTLSGRVPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       502 N~l~g~iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      |.+. .+|.. . .+.+|+.+++.+|.
T Consensus       108 n~l~-~lp~~-~-~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         108 NQLE-KLPEL-Q-NSSFLKIIDVDNNS  131 (353)
T ss_dssp             SCCS-SCCCC-T-TCTTCCEEECCSSC
T ss_pred             cccc-cccch-h-hhccceeecccccc
Confidence            8877 56642 2 35677777777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=6.3e-06  Score=73.84  Aligned_cols=85  Identities=26%  Similarity=0.251  Sum_probs=58.8

Q ss_pred             cccccccccccccCcCcccccc--CCCCcCCCccCCeEeccCCCCCCCCcc-ccCCCCCCCEEeccCCcCcccCCch---
Q 006940          438 NGISKLRHLQSINLSGNSIRGA--IPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLNGNTLSGRVPAA---  511 (624)
Q Consensus       438 ~~~~~L~~L~~L~Ls~N~l~g~--ip~~l~~l~~L~~LdLs~N~l~g~iP~-~l~~l~~L~~L~Ls~N~l~g~iP~~---  511 (624)
                      ..+..++.|+.|+|++|+++..  ++..+..|++|+.|+|++|.++ .+++ .......|+.|+|++|++.......   
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            3445688899999999998843  2345667889999999999988 4443 2233456888999999988655432   


Q ss_pred             ---hhhccCCCCEEe
Q 006940          512 ---LGGRLLHRASFN  523 (624)
Q Consensus       512 ---~~~~l~~l~~l~  523 (624)
                         +...+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence               233456777664

>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: YxiM N-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]

Probab=97.50  E-value=5e-05  Score=66.11  Aligned_cols=79  Identities=15%  Similarity=0.299  Sum_probs=59.2

Q ss_pred             ccEEEeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEECCeecccCCceeeecCCceeeEEEEEEEeeeCeeEEEEeCC
Q 006940          269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVTLHP  348 (624)
Q Consensus       269 ~lt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  348 (624)
                      ...|.++| |+|.|.|.++|.|..         ..++.++|...+..+     .|..   ..+.+++++++|+|+|.|..
T Consensus        64 ~~~f~v~v-PnG~Y~Vtv~~Gd~~---------~~~~~~eg~~~~~~~-----~g~~---~~~~~~V~VtDG~L~l~ft~  125 (146)
T d2o14a1          64 NNTFNVDL-PNGLYEVKVTLGNTA---------RASVAAEGVFQVINM-----TGDG---AEDTFQIPVTDGQLNLLVTE  125 (146)
T ss_dssp             SCCEEEEC-CSEEEEEEEEESSCS---------EEEEEETTEEEEEEE-----ESTT---CEEEEEEEECSSEEEEEEEE
T ss_pred             CceEEEEC-CCCeEEEEEEEecCC---------CccEEEeeEEecccc-----CCcc---EEEEEEEEEECCeEEEEEec
Confidence            35799998 799999999999832         247888997765443     4442   34567788999999999964


Q ss_pred             -CCCchHHHHHHhhhhhh
Q 006940          349 -KGGSHAIINAIEVFEII  365 (624)
Q Consensus       349 -~~~~~p~lnaiEi~~~~  365 (624)
                       ..+.+|.||+|||-++.
T Consensus       126 ~~~G~~~~in~l~I~~~~  143 (146)
T d2o14a1         126 GKAGTAFTLSALKIKKLS  143 (146)
T ss_dssp             SSTTSCCEEEEEEEEEEE
T ss_pred             CCCCCccEEEEEEEEecc
Confidence             34567999999997754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.46  E-value=0.00011  Score=72.86  Aligned_cols=84  Identities=23%  Similarity=0.350  Sum_probs=58.9

Q ss_pred             EEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcC
Q 006940          425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTL  504 (624)
Q Consensus       425 L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  504 (624)
                      .++..+.+.+.    ...+++|+.|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +.+|+.|+|++|++
T Consensus       269 ~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L  336 (353)
T d1jl5a_         269 LNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPL  336 (353)
T ss_dssp             EECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCC
T ss_pred             cccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcC
Confidence            44555554432    234578889999999988 67753   567888999999988 67753   45788999999998


Q ss_pred             cccCCchhhhccCCCCEEecc
Q 006940          505 SGRVPAALGGRLLHRASFNFT  525 (624)
Q Consensus       505 ~g~iP~~~~~~l~~l~~l~l~  525 (624)
                      + .+|..    ...++.|.+.
T Consensus       337 ~-~lp~~----~~~L~~L~~~  352 (353)
T d1jl5a_         337 R-EFPDI----PESVEDLRMN  352 (353)
T ss_dssp             S-SCCCC----CTTCCEEECC
T ss_pred             C-CCCcc----ccccCeeECc
Confidence            7 67753    3346666653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=8.1e-06  Score=84.49  Aligned_cols=107  Identities=21%  Similarity=0.294  Sum_probs=66.1

Q ss_pred             EEEEEEcCCCCCccC-CCcccccccccccccCcCccccc----cCCCCcCCCccCCeEeccCCCCCC----CCccccC-C
Q 006940          421 VIDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNG----SIPESLG-Q  490 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~-~p~~~~~L~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~LdLs~N~l~g----~iP~~l~-~  490 (624)
                      .|+.|+++.|+++.. +..-+..+++|+.|+|++|.++-    .+...+..+++|+.|||++|.++.    .+...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            477888888888753 12334556777888888887762    234445677788888888887651    1122222 2


Q ss_pred             CCCCCEEeccCCcCccc----CCchhhhccCCCCEEeccCCC
Q 006940          491 LTALRRLNLNGNTLSGR----VPAALGGRLLHRASFNFTDNA  528 (624)
Q Consensus       491 l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~l~l~~N~  528 (624)
                      ..+|+.|+|++|+++..    ++..+. ...+|+.|++++|.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~-~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDNL  123 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTT-SCTTCCEEECCSSB
T ss_pred             CCCCCEEECCCCCccccccccccchhh-cccccccccccccc
Confidence            34688888888877643    222222 24567788887775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=2.2e-05  Score=70.14  Aligned_cols=78  Identities=24%  Similarity=0.262  Sum_probs=60.4

Q ss_pred             EEEEEEcCCCCCccC--CCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccc-------cCCC
Q 006940          421 VIDGLGLDNQGLRGF--LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-------LGQL  491 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~--~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~-------l~~l  491 (624)
                      .++.|+|++|.|+..  ++..+..|++|+.|+|++|.++..-+........|+.|+|++|.+.....+.       +..+
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~  145 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF  145 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHC
Confidence            378899999999864  3456788999999999999998433323334457999999999998765532       5678


Q ss_pred             CCCCEEe
Q 006940          492 TALRRLN  498 (624)
Q Consensus       492 ~~L~~L~  498 (624)
                      ++|+.||
T Consensus       146 P~L~~LD  152 (162)
T d1koha1         146 PKLLRLD  152 (162)
T ss_dssp             TTCCEET
T ss_pred             CCCCEEC
Confidence            9999886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.18  E-value=3.1e-05  Score=77.77  Aligned_cols=109  Identities=15%  Similarity=0.232  Sum_probs=78.5

Q ss_pred             EEEEEcCCCCCccC-----CCcccccccccccccCcCcccccc----CCCCcCCCccCCeEeccCCCCCCCCc----ccc
Q 006940          422 IDGLGLDNQGLRGF-----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIP----ESL  488 (624)
Q Consensus       422 l~~L~L~~n~l~g~-----~p~~~~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~iP----~~l  488 (624)
                      ++.|+|++|.+...     +...+..+++|+.|+|++|.++..    +...+..+++|+.|+|++|.+++.-.    +.+
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l  267 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF  267 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             hcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHh
Confidence            77899999998642     344577889999999999998633    34556788999999999999874322    222


Q ss_pred             C--CCCCCCEEeccCCcCccc----CCchhhhccCCCCEEeccCCCCC
Q 006940          489 G--QLTALRRLNLNGNTLSGR----VPAALGGRLLHRASFNFTDNAGL  530 (624)
Q Consensus       489 ~--~l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~l~l~~N~~l  530 (624)
                      .  ....|+.|+|++|+++..    +...+......|+.|++++|...
T Consensus       268 ~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            2  236799999999998743    22223223467899999999854

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=3.2e-05  Score=79.77  Aligned_cols=109  Identities=20%  Similarity=0.147  Sum_probs=72.2

Q ss_pred             EEEEEcCCCCCccCCCcc----cccccccccccCcCcccccc----CCCCcC-CCccCCeEeccCCCCCC----CCcccc
Q 006940          422 IDGLGLDNQGLRGFLPNG----ISKLRHLQSINLSGNSIRGA----IPSSLG-TIASLEVLDLSYNFFNG----SIPESL  488 (624)
Q Consensus       422 l~~L~L~~n~l~g~~p~~----~~~L~~L~~L~Ls~N~l~g~----ip~~l~-~l~~L~~LdLs~N~l~g----~iP~~l  488 (624)
                      ++.++++++.+.......    +....+|+.|+|++|+++..    ++..+. ....|+.|+|++|.++.    .+++.+
T Consensus       314 L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  393 (460)
T d1z7xw1         314 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL  393 (460)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHH
Confidence            667888888877543332    34456788999999888642    333333 35678899999998873    244556


Q ss_pred             CCCCCCCEEeccCCcCcccCCchhhh----ccCCCCEEeccCCCCC
Q 006940          489 GQLTALRRLNLNGNTLSGRVPAALGG----RLLHRASFNFTDNAGL  530 (624)
Q Consensus       489 ~~l~~L~~L~Ls~N~l~g~iP~~~~~----~l~~l~~l~l~~N~~l  530 (624)
                      ..+++|++|+|++|+++......+..    ....|+.+++.+|.+.
T Consensus       394 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         394 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            67788999999999887543333322    1235788888877653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=2.7e-05  Score=76.24  Aligned_cols=81  Identities=25%  Similarity=0.278  Sum_probs=48.6

Q ss_pred             EEEEEEcCCCCCccC-CCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC-CCCC-CCccccCCCCCCCEE
Q 006940          421 VIDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNG-SIPESLGQLTALRRL  497 (624)
Q Consensus       421 ~l~~L~L~~n~l~g~-~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N-~l~g-~iP~~l~~l~~L~~L  497 (624)
                      .++.|+|+++.+... ++.-+..+++|+.|+|+++.++...+..++.+++|+.|+|+++ .++. .+..-...+++|+.|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            366677777666543 2334566777777777777776666666667777777777764 3431 111222345666666


Q ss_pred             eccC
Q 006940          498 NLNG  501 (624)
Q Consensus       498 ~Ls~  501 (624)
                      +|++
T Consensus       127 ~ls~  130 (284)
T d2astb2         127 NLSW  130 (284)
T ss_dssp             ECCC
T ss_pred             cccc
Confidence            6665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.94  E-value=6.4e-05  Score=75.33  Aligned_cols=107  Identities=24%  Similarity=0.271  Sum_probs=77.0

Q ss_pred             EEEEEcCCCCCccC----CCcccccccccccccCcCcccccc-----CCCCcCCCccCCeEeccCCCCCCC----Ccccc
Q 006940          422 IDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGA-----IPSSLGTIASLEVLDLSYNFFNGS----IPESL  488 (624)
Q Consensus       422 l~~L~L~~n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~g~-----ip~~l~~l~~L~~LdLs~N~l~g~----iP~~l  488 (624)
                      ++.+.+++|.+...    +...+..+..|+.|+|++|.++..     +...+..+++|+.|+|++|.++..    +...+
T Consensus       160 L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l  239 (344)
T d2ca6a1         160 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  239 (344)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             cceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccc
Confidence            56677888877532    333456678899999999998642     345677889999999999988632    44567


Q ss_pred             CCCCCCCEEeccCCcCcccCCchhhhc-----cCCCCEEeccCCC
Q 006940          489 GQLTALRRLNLNGNTLSGRVPAALGGR-----LLHRASFNFTDNA  528 (624)
Q Consensus       489 ~~l~~L~~L~Ls~N~l~g~iP~~~~~~-----l~~l~~l~l~~N~  528 (624)
                      ..+++|+.|+|++|.+++.-...+...     ...|+.|++++|.
T Consensus       240 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            788999999999999975433333321     2458889998885

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00015  Score=70.68  Aligned_cols=89  Identities=21%  Similarity=0.171  Sum_probs=68.6

Q ss_pred             ccccccccccCcCcccccc-CCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCC-cCcccCCchhhhccCC
Q 006940          441 SKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN-TLSGRVPAALGGRLLH  518 (624)
Q Consensus       441 ~~L~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N-~l~g~iP~~~~~~l~~  518 (624)
                      ....+|+.|||+++.++.. ++..+..+++|++|+|+++.++...+..++.+++|+.|+|+++ .++..--..+...+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            3456899999999998754 3455778999999999999998888888999999999999984 5652211122334678


Q ss_pred             CCEEeccCCCC
Q 006940          519 RASFNFTDNAG  529 (624)
Q Consensus       519 l~~l~l~~N~~  529 (624)
                      |+.|+++++..
T Consensus       123 L~~L~ls~c~~  133 (284)
T d2astb2         123 LDELNLSWCFD  133 (284)
T ss_dssp             CCEEECCCCTT
T ss_pred             ccccccccccc
Confidence            99999987543

>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: YxiM N-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]

Probab=96.33  E-value=0.015  Score=49.82  Aligned_cols=81  Identities=19%  Similarity=0.288  Sum_probs=58.9

Q ss_pred             CCceEEeecCCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEEeecCCCCcccceeEEEEEEeeCCeEEEEEeeCC-
Q 006940           83 PENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTG-  161 (624)
Q Consensus        83 ~~~~Y~~~~~~~g~y~vRl~F~~~~y~~~~~~~~Fdv~~~~~~~~~v~~~~~~~~~~~~~E~~~~~~~~~l~i~f~~~~-  161 (624)
                      ....|.+++ ++|.|.|+++|..        ....+|.+.|.   ..+..+  ......+.+.+.+.+++|.|.|.... 
T Consensus        63 ~~~~f~v~v-PnG~Y~Vtv~~Gd--------~~~~~~~~eg~---~~~~~~--~g~~~~~~~~V~VtDG~L~l~ft~~~~  128 (146)
T d2o14a1          63 SNNTFNVDL-PNGLYEVKVTLGN--------TARASVAAEGV---FQVINM--TGDGAEDTFQIPVTDGQLNLLVTEGKA  128 (146)
T ss_dssp             CSCCEEEEC-CSEEEEEEEEESS--------CSEEEEEETTE---EEEEEE--ESTTCEEEEEEEECSSEEEEEEEESST
T ss_pred             CCceEEEEC-CCCeEEEEEEEec--------CCCccEEEeeE---Eecccc--CCccEEEEEEEEEECCeEEEEEecCCC
Confidence            345788854 6799999999984        12456777773   222222  34556778888999999999997554 


Q ss_pred             CCCCcEeeEEEEEcCC
Q 006940          162 HGDPAILSLEILQVDD  177 (624)
Q Consensus       162 ~~~pfIsaIEl~~l~~  177 (624)
                      ...|-||+|||.+.++
T Consensus       129 G~~~~in~l~I~~~~d  144 (146)
T d2o14a1         129 GTAFTLSALKIKKLSD  144 (146)
T ss_dssp             TSCCEEEEEEEEEEES
T ss_pred             CCccEEEEEEEEeccc
Confidence            4579999999998765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.44  E-value=0.0016  Score=57.72  Aligned_cols=84  Identities=17%  Similarity=0.259  Sum_probs=50.8

Q ss_pred             EEEEEcCCC-CCccC----CCcccccccccccccCcCccccccCCC----CcCCCccCCeEeccCCCCCCC----Ccccc
Q 006940          422 IDGLGLDNQ-GLRGF----LPNGISKLRHLQSINLSGNSIRGAIPS----SLGTIASLEVLDLSYNFFNGS----IPESL  488 (624)
Q Consensus       422 l~~L~L~~n-~l~g~----~p~~~~~L~~L~~L~Ls~N~l~g~ip~----~l~~l~~L~~LdLs~N~l~g~----iP~~l  488 (624)
                      ++.|+|+++ .+...    +-..+...+.|+.|+|++|.+...-..    .+...+.|+.|+|++|.++..    +-..+
T Consensus        17 L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL   96 (167)
T d1pgva_          17 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST   96 (167)
T ss_dssp             CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred             CcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHH
Confidence            667888764 34321    222455567788888888877633222    233456778888888877632    12345


Q ss_pred             CCCCCCCEEeccCCcCc
Q 006940          489 GQLTALRRLNLNGNTLS  505 (624)
Q Consensus       489 ~~l~~L~~L~Ls~N~l~  505 (624)
                      ...++|+.|+|++|.+.
T Consensus        97 ~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          97 LVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             TTTCCCSEEECCCCSSC
T ss_pred             HhCCcCCEEECCCCcCC
Confidence            56677888888777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.73  E-value=0.0038  Score=55.14  Aligned_cols=87  Identities=16%  Similarity=0.191  Sum_probs=60.6

Q ss_pred             cccccccccCcCc-ccccc----CCCCcCCCccCCeEeccCCCCCC----CCccccCCCCCCCEEeccCCcCcccCCchh
Q 006940          442 KLRHLQSINLSGN-SIRGA----IPSSLGTIASLEVLDLSYNFFNG----SIPESLGQLTALRRLNLNGNTLSGRVPAAL  512 (624)
Q Consensus       442 ~L~~L~~L~Ls~N-~l~g~----ip~~l~~l~~L~~LdLs~N~l~g----~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~  512 (624)
                      +.+.|+.|+|+++ .++..    +-..+.....|+.|+|++|.+..    .+-+.+...+.|+.|+|++|.++..--..+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578999999974 45432    22346667889999999999873    222445567899999999999984322223


Q ss_pred             hhcc---CCCCEEeccCCC
Q 006940          513 GGRL---LHRASFNFTDNA  528 (624)
Q Consensus       513 ~~~l---~~l~~l~l~~N~  528 (624)
                      ...+   ..|+.|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            3222   458999999885

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.34  E-value=0.017  Score=50.62  Aligned_cols=106  Identities=17%  Similarity=0.290  Sum_probs=60.6

Q ss_pred             EEEEEcCC-CCCccC----CCcccccccccccccCcCccccccC----CCCcCCCccCCeEeccCCCCCCC----Ccccc
Q 006940          422 IDGLGLDN-QGLRGF----LPNGISKLRHLQSINLSGNSIRGAI----PSSLGTIASLEVLDLSYNFFNGS----IPESL  488 (624)
Q Consensus       422 l~~L~L~~-n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~g~i----p~~l~~l~~L~~LdLs~N~l~g~----iP~~l  488 (624)
                      ++.|+|++ +.++..    +-..+...+.|+.|+|++|.++..-    -..+.....|+.|++++|.++..    +-..+
T Consensus        19 L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l   98 (166)
T d1io0a_          19 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL   98 (166)
T ss_dssp             CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred             CcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHH
Confidence            66677876 345321    2234556778888888888776432    12344567888888888877632    22445


Q ss_pred             CCCCCCCEEec--cCCcCcccCCchhhh---ccCCCCEEeccCC
Q 006940          489 GQLTALRRLNL--NGNTLSGRVPAALGG---RLLHRASFNFTDN  527 (624)
Q Consensus       489 ~~l~~L~~L~L--s~N~l~g~iP~~~~~---~l~~l~~l~l~~N  527 (624)
                      ...++|+.++|  +.|.+....-..+..   ....|+.|++..+
T Consensus        99 ~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          99 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            66677876554  456664211111211   1355677766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=81.40  E-value=0.19  Score=43.40  Aligned_cols=85  Identities=20%  Similarity=0.168  Sum_probs=55.8

Q ss_pred             ccccccccccCcC-cccccc----CCCCcCCCccCCeEeccCCCCCCCC----ccccCCCCCCCEEeccCCcCcccCCch
Q 006940          441 SKLRHLQSINLSG-NSIRGA----IPSSLGTIASLEVLDLSYNFFNGSI----PESLGQLTALRRLNLNGNTLSGRVPAA  511 (624)
Q Consensus       441 ~~L~~L~~L~Ls~-N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~i----P~~l~~l~~L~~L~Ls~N~l~g~iP~~  511 (624)
                      .+.++|+.|+|++ +.++..    +-..+...+.|+.|+|++|.++..-    -+.+...++|+.|++++|.+...--..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3557899999987 455422    2234557789999999999887322    234456789999999999987432222


Q ss_pred             hhhc---cCCCCEEecc
Q 006940          512 LGGR---LLHRASFNFT  525 (624)
Q Consensus       512 ~~~~---l~~l~~l~l~  525 (624)
                      +...   ...++.+++.
T Consensus        94 l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          94 LVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHGGGGCSSCCEEECC
T ss_pred             HHHHHHhCccccEEeec
Confidence            2222   3456666664