Citrus Sinensis ID: 006954

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620----
MMGKNDRFSGGYYRSNAFETTGESEGSGSSGRIDAEITASEDSSAPTRKCINLNPDKWDAFGVPLQVLSLPNLSRSERKDLVHKLTSDLEQIRILQKKAGVQRTNGVTVSSSSDILSCSNGPNRPKVQNSRKSLVMTCGPGKKVNPVSNNSRGWNRGTSGRFESAGKPTSTTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLPVTKPQSLPEKSAPRANVETAKAIPPAKRKKIEIMCQEIVPTAVKPVMTDQEKHNLGRELESLLAEMPVHIIDFLREHSSNGRETGEDEIEIDIDDLSNDTLLTLRKLLDDYLEEKQKNQANVEPCEIELLNESGLSNSSMQQGKGNDLPDEDIDIGGNEPPVSSYPPMEIEKDTAIKSSKRVSPGSSSGSESSSSSDSESDDVKASSPVSASKVPKVSGHKDKLDEKTGSGDPLDVNQSVSGLDQLEHTSQQKPSSVESDFRQDGESAPNERQVSPDKLYRATLLKNRFADTILKAKEKTLSQGDKGDPEKLRREREELELQKRKGLTFTINLTYANFL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccc
ccccccccccccccccEEEcccccccccccccEccccccccccccccccEEEEcccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHccccccEEEEEHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHEEHEHHHHHHcc
mmgkndrfsggyyrsnafettgesegsgssgridaeitasedssaptrkcinlnpdkwdafgvplqvlslpnlsrseRKDLVHKLTSDLEQIRILQKKAgvqrtngvtvssssdilscsngpnrpkvqnsrkslvmtcgpgkkvnpvsnnsrgwnrgtsgrfesagkptsttgtgnVILMKQCETLLKRLMShqygwvfntpvdvvkmnipdyytiikhpmdfgtiKEKMasnaysspleFLADVRLTFsnamtynppgndfhIMADTLRKFFEARWKAIEkklpvtkpqslpeksapranvetakaippakrkKIEIMCQEivptavkpvmtdqekHNLGRELESLLAEMPVHIIDFLRehssngretgedeieididdlsnDTLLTLRKLLDDYLEEKQknqanvepcEIELlnesglsnssmqqgkgndlpdedidiggneppvssyppmeiekdtaiksskrvspgsssgsesssssdsesddvkasspvsaskvpkvsghkdkldektgsgdpldvnqsvsgldqlehtsqqkpssvesdfrqdgesapnerqvspdKLYRATLLKNRFADTILKAKEKtlsqgdkgdpeKLRREREELELQKRKGLTFTINLTYANFL
mmgkndrfsggyyrsnafettgesegsgssgrIDAEitasedssaptrKCINLNPDKWDAFGVPLQVlslpnlsrseRKDLVHKLTSDLEQIRILqkkagvqrtngvtvssssdilscsngpnrpkvqnsrkSLVMtcgpgkkvnpvsnnsrgwnrgtsgrfesagkptsttgtgnvILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEkklpvtkpqslpeksapranvetakaippakrkkiEIMCQEIVPtavkpvmtdqEKHNLGRELESLLAEMPVHIIDFLREHSSNGRETGedeieididdlsnDTLLTLRKLLDDYLEEKqknqanvepCEIELLNESGLSNSSMQQGKGNDLPDEDIDIGGneppvssyppmEIEKDTAiksskrvspgsssgsesssssdsesddvkasspvsaskvpkvsghkdkldektgsgdpldvNQSVSGLDQLehtsqqkpssvesdfrqdgesapnerqvspdkLYRATLLKNRFADTILkakektlsqgdkgdpeklRREREELelqkrkgltftinltyanfl
MMGKNDRFSGGYYRSNAFettgesegsgssgRIDAEITASEDSSAPTRKCINLNPDKWDAFGVPLQVLSLPNLSRSERKDLVHKLTSDLEQIRILQKKAGVQRTNGVTVSSSSDILSCSNGPNRPKVQNSRKSLVMTCGPGKKVNPVSNNSRGWNRGTSGRFESAGKPTSTTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLPVTKPQSLPEKSAPRANVETakaippakrkkiEIMCQEIVPTAVKPVMTDQEKHNLGRELESLLAEMPVHIIDFLREHSSNGRETGedeieididdlsndtlltlrkllddylEEKQKNQANVEPCEIellnesglsnssMQQGKGNDLPDEDIDIGGNEPPVSSYPPMEIEKDTAIKsskrvspgsssgsesssssdsesddvkasspvsaskvpkvsGHKDKLDEKTGSGDPLDVNQSVSGLDQLEHTSQQKPSSVESDFRQDGESAPNERQVSPDKLYRATLLKNRFADTILKAKEKTLSQGDKGDPeklrrereelelqkrkGLTFTINLTYANFL
*************************************************CINLNPDKWDAFGVPLQVLSLPN********LVHKLTSDLEQIRILQ*****************************************************************************TGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAY***LEFLA******************FHIMADTLRKFFEARWKAIEK*********************************IEIMCQEIVPTAVKPVM*******LGRELESLLAEMPVHIIDFLR**************EIDIDDLSNDTLLTLRKLLDDYL***********************************************************************************************************************************************************************YRATLLKNRFADTIL*******************************GLTFTINLTYA***
***********************************************************AFGVPLQV*****************************************************************************************************************KQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKK*******************************************************************MPVHII******************EIDIDDLSNDTLLTLRKLLD****************************************************************************************************************************************************************************ATLLKNRFADTILKA************************************LTYANFL
********SGGYYRSNAFE************RIDAEI*********TRKCINLNPDKWDAFGVPLQVLSLPNLSRSERKDLVHKLTSDLEQIRILQKKAGVQRTNGVTVSSSSDILSCSNGPNRPKVQNSRKSLVMTCGPGKKVNPVSNNSRGWNRGTSG**********TTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLPVTKPQSLPEKSAPRANVETAKAIPPAKRKKIEIMCQEIVPTAVKPVMTDQEKHNLGRELESLLAEMPVHIIDFLREHSSNGRETGEDEIEIDIDDLSNDTLLTLRKLLDDYLEEKQKNQANVEPCEIELLNESGLSN*********DLPDEDIDIGGNEPPVSSYPPMEIEKDTAI**************************************************KTGSGDPLDVNQSVSGLDQ******************************PDKLYRATLLKNRFADTILKAKEKT************RREREELELQKRKGLTFTINLTYANFL
**********GYYRSNAFETTG*********************S*PTRKCINLNPDKWDAFGVPLQVLSLPNLSRSERKDLVHKLTSDLEQIRILQKKAG************************************************************************GTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIE*************************************************VMTDQEKHNLGRELESLLAEMPVHIIDFLREHSSNGRETGEDEIEIDIDDLSNDTLLTLRKLLDDYLEEKQ***********************************DIDIGGNEPPVSSYPPMEIEKD***************************************************************************************************QVSPDKLYRATLLKNRFADTILKAKEKTLSQGDKGDPEKLRREREELELQKRKGLTFTINLTYANFL
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MMGKNDRFSGGYYRSNAFETTGESEGSGSSGRIDAEITASEDSSAPTRKCINLNPDKWDAFGVPLQVLSLPNLSRSERKDLVHKLTSDLEQIRILQKKAGVQRTNGVTVSSSSDILSCSNGPNRPKVQNSRKSLVMTCGPGKKVNPVSNNSRGWNRGTSGRFESAGKPTSTTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLPVTKPQSLPEKSAPRANVETAKAIPPAKRKKIEIMCQEIVPTAVKPVMTDQEKHNLGRELESLLAEMPVHIIDFLREHSSNGRETGEDEIEIDIDDLSNDTLLTLRKLLDDYLEEKQKNQANVEPCEIELLNESGLSNSSMQQGKGNDLPDEDIDIGGNEPPVSSYPPMEIEKDTAIKSSKRVSPGSSSGSESSSSSDSESDDVKASSPVSASKVPKVSGHKDKLDEKTGSGDPLDVNQSVSGLDQLEHTSQQKPSSVESDFRQDGESAPNERQVSPDKLYRATLLKNRFADTILKAKEKTLSQGDKGDPEKLRREREELELQKRKGLTFTINLTYANFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query624 2.2.26 [Sep-21-2011]
Q9LK27 813 Transcription factor GTE8 yes no 0.926 0.710 0.532 1e-163
Q93YS6 688 Transcription factor GTE9 no no 0.881 0.799 0.495 1e-139
Q9FGW9 1061 Transcription factor GTE1 no no 0.899 0.528 0.463 1e-125
Q93ZB7 620 Transcription factor GTE1 no no 0.785 0.790 0.414 1e-106
Q9S7T1461 Transcription factor GTE3 no no 0.459 0.622 0.298 3e-36
Q9LNC4766 Transcription factor GTE4 no no 0.331 0.270 0.360 2e-35
Q8H1D7487 Transcription factor GTE5 no no 0.474 0.607 0.282 3e-30
Q9LS28494 Transcription factor GTE1 no no 0.161 0.204 0.539 1e-29
Q84XV2386 Transcription factor GTE1 no no 0.403 0.652 0.321 2e-28
Q7Y214590 Transcription factor GTE7 no no 0.320 0.338 0.337 5e-28
>sp|Q9LK27|GTE8_ARATH Transcription factor GTE8 OS=Arabidopsis thaliana GN=GTE8 PE=2 SV=2 Back     alignment and function desciption
 Score =  577 bits (1486), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 326/612 (53%), Positives = 414/612 (67%), Gaps = 34/612 (5%)

Query: 2   MGKNDRFSGGYYRSNAFETTGESEGSGSSGRIDAEITASEDSSAPTRKCINLNPDKWDAF 61
           M ++  F GGYYR N FE   ESEGSGSS +ID E+TASE+SS P RKCI LN +  D +
Sbjct: 1   MVESAAFPGGYYR-NTFEAPEESEGSGSSAQIDTEVTASENSSTPARKCIMLNSNDEDPY 59

Query: 62  GVPLQVLSLPNLSRSERKDLVHKLTSDLEQIRILQKKAGVQRTNGVTVSSSSDILSCSNG 121
           GV  QV+SL N+S+SERKDL+++L  +LEQ +I+ K A +QR N   VSS+SD +  S G
Sbjct: 60  GVQRQVISLYNMSQSERKDLIYRLKLELEQTKIVLKNAELQRMNPAAVSSTSDRVGFSTG 119

Query: 122 PN-RPKVQNSRKSLVMTCGPGKKVNPVSNNSRGWNRGTSGRFESAGKPTSTTGTGNVILM 180
                +V NS+K      G GKKV   +  SRGWNRGTSG+FES+ +  + T T N+ LM
Sbjct: 120 QKISSRVSNSKKPSDFAVGSGKKVRHQNGTSRGWNRGTSGKFESSKE--TMTSTPNITLM 177

Query: 181 KQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLE 240
           KQC+TLL++L SH + WVF  PVDVVK+NIPDY T IKHPMD GT+K+ +AS  YSSP E
Sbjct: 178 KQCDTLLRKLWSHPHSWVFQAPVDVVKLNIPDYLTTIKHPMDLGTVKKNLASGVYSSPHE 237

Query: 241 FLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLPVTKPQSLPEKS-APR 299
           F ADVRLTF+NAMTYNPPG+D HIM D L K FEARWK I+KKLP    Q+LP  +  P 
Sbjct: 238 FAADVRLTFTNAMTYNPPGHDVHIMGDILSKLFEARWKTIKKKLPPCSMQTLPAVTLEPN 297

Query: 300 ANVETAKAIPPAKRKKIEIMCQEIVPTAVKPVMTDQEKHNLGRELESLLAEMPVHIIDFL 359
              + A ++PPAK++K+    +E VP  VKP+MT+ E+H LGR+LESLL E+P HIIDFL
Sbjct: 298 DERKAAISVPPAKKRKMASPVRESVPEPVKPLMTEVERHRLGRQLESLLDELPAHIIDFL 357

Query: 360 REHSSNGRETGEDEIEIDIDDLSNDTLLTLRKLLDDYLEEKQKNQANVEPCEIELLNESG 419
           ++H+SNG E  EDEIEIDID LS++ L+TLR LLD+Y++ K+  Q NVEPCEIEL+N S 
Sbjct: 358 KKHNSNGGEIAEDEIEIDIDVLSDEVLVTLRNLLDEYIQNKEAKQTNVEPCEIELINGSR 417

Query: 420 LSNSSMQQGKGNDLPDEDIDIGGNEPPVSSYPPMEIEKDTAIKSSKRVSPGSSSGSESSS 479
            SNSS+Q  +GN++ DE +D  GNEPP+S                       SS    S 
Sbjct: 418 PSNSSLQ--RGNEMADEYVD--GNEPPIS----------------------RSSSDSDSG 451

Query: 480 SSDSESDDVKASSPVSASKVPKVSGHKDKLDEKTGSGDPLDVNQSVSGLDQLEHTSQQKP 539
           SS+ +SDD K      +SK+P+ +  + + DE T   D    +QS   L+Q++  SQQK 
Sbjct: 452 SSEDQSDDAKPMVQGDSSKMPETANSEAQRDENTRIDDLFVGSQSTGALEQMDICSQQKL 511

Query: 540 SSVESDFRQDGESAPNERQVSPDKLYRATLLKNRFADTILKAKEKTLSQ-GDKGDPEKLR 598
           SS ESD + +G     E   S +K YRA LLKNRFAD ILKA+EK L Q G KGDPE+LR
Sbjct: 512 SSDESDGQHEGNIL--ETPASSEKRYRAALLKNRFADIILKAREKPLPQNGIKGDPERLR 569

Query: 599 REREELELQKRK 610
           +EREEL LQK+K
Sbjct: 570 KEREELVLQKKK 581

Arabidopsis thaliana (taxid: 3702)
>sp|Q93YS6|GTE9_ARATH Transcription factor GTE9 OS=Arabidopsis thaliana GN=GTE9 PE=1 SV=1 Back     alignment and function description
>sp|Q9FGW9|GTE10_ARATH Transcription factor GTE10 OS=Arabidopsis thaliana GN=GTE10 PE=1 SV=2 Back     alignment and function description
>sp|Q93ZB7|GTE11_ARATH Transcription factor GTE11 OS=Arabidopsis thaliana GN=GTE11 PE=1 SV=1 Back     alignment and function description
>sp|Q9S7T1|GTE3_ARATH Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana GN=GTE3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LNC4|GTE4_ARATH Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1D7|GTE5_ARATH Transcription factor GTE5, chloroplastic OS=Arabidopsis thaliana GN=GTE5 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS28|GTE12_ARATH Transcription factor GTE12 OS=Arabidopsis thaliana GN=GTE12 PE=2 SV=2 Back     alignment and function description
>sp|Q84XV2|GTE1_ARATH Transcription factor GTE1 OS=Arabidopsis thaliana GN=GTE1 PE=2 SV=1 Back     alignment and function description
>sp|Q7Y214|GTE7_ARATH Transcription factor GTE7 OS=Arabidopsis thaliana GN=GTE7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query624
359488601 739 PREDICTED: transcription factor GTE8-lik 0.967 0.817 0.675 0.0
296090258714 unnamed protein product [Vitis vinifera] 0.929 0.812 0.650 0.0
356560519 744 PREDICTED: transcription factor GTE8-lik 0.972 0.815 0.641 0.0
356560521 740 PREDICTED: transcription factor GTE8-lik 0.955 0.805 0.6 0.0
356574042 741 PREDICTED: transcription factor GTE8-lik 0.961 0.809 0.625 0.0
255536997718 bromodomain-containing protein, putative 0.855 0.743 0.626 1e-176
255540327 759 bromodomain-containing protein, putative 0.943 0.776 0.550 1e-171
359491054 770 PREDICTED: LOW QUALITY PROTEIN: transcri 0.919 0.745 0.557 1e-170
449455878 750 PREDICTED: transcription factor GTE8-lik 0.943 0.785 0.574 1e-168
224136059709 global transcription factor group [Popul 0.915 0.805 0.540 1e-168
>gi|359488601|ref|XP_002270843.2| PREDICTED: transcription factor GTE8-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/611 (67%), Positives = 480/611 (78%), Gaps = 7/611 (1%)

Query: 2   MGKNDRFSGGYYRSNAFETTGESEGSGSSGRIDAEITASEDSSAPTRKCINLNPDKWDAF 61
           M KNDRF GGYYR  AFE  GESEGSGSSGR+D EI ASEDS  P RKCINLN +  D+F
Sbjct: 1   MAKNDRFPGGYYR--AFENQGESEGSGSSGRVDMEIAASEDSCVPMRKCINLNSNNCDSF 58

Query: 62  GVPLQVLSLPNLSRSERKDLVHKLTSDLEQIRILQKKAGVQRTNGVTVSSSSDILSCSNG 121
            VP+QVL L N+S SERKDLV +L  +LEQIR+LQKK  +QRTNGV +SSSSDILSCSNG
Sbjct: 59  SVPIQVLPLSNISPSERKDLVLRLRMELEQIRLLQKKVDLQRTNGVALSSSSDILSCSNG 118

Query: 122 PNRPKVQNSRKSLVMTCGPGKKVNPVSNNSRGWNRGTSGRFESAGKPTSTTGTGNVILMK 181
             R  V N RKS  +T GPGKK+ P+ N +R WNRGTSGRFESA +  S   T +V+LMK
Sbjct: 119 -QRGHVDNGRKSSALTSGPGKKLEPLGNKNRAWNRGTSGRFESATQ-ASAPSTASVLLMK 176

Query: 182 QCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEF 241
           QCETLLK+LMSHQ+GWVFN PVD+VK+NIPDY+TIIKHPMD GTIK K+AS AYSSPL+F
Sbjct: 177 QCETLLKQLMSHQHGWVFNEPVDIVKLNIPDYFTIIKHPMDLGTIKGKIASGAYSSPLDF 236

Query: 242 LADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLPVTKPQSLPEKSAPRAN 301
            ADVRLTFSNA T+NPPGND H MADTL KFFE RWK IEKKLPVTK QSLP K      
Sbjct: 237 AADVRLTFSNAQTFNPPGNDVHKMADTLSKFFEVRWKTIEKKLPVTKTQSLPGKYGTHGE 296

Query: 302 VETAKAIPPAKRKKIEIMCQEIVPTAVKPVMTDQEKHNLGRELESLLAEMPVHIIDFLRE 361
           ++TAK +PP+K++K+     E++   V+ VMT  EK NLGR+LE LL E+PV IIDFLR 
Sbjct: 297 MKTAKPMPPSKKRKVTSTHHEVIQEPVQKVMTADEKRNLGRDLEDLLGEIPVQIIDFLRV 356

Query: 362 HSSNGRETGE-DEIEIDIDDLSNDTLLTLRKLLDDYLEEKQKNQANVEPCEIELLNESGL 420
           HSSNGRETGE DEIE+DI+ LS+DTL TLRKLLDDYL+EKQK+    EPCEIELL++SG 
Sbjct: 357 HSSNGRETGEDDEIEVDIEALSDDTLFTLRKLLDDYLQEKQKSHGKAEPCEIELLHDSGP 416

Query: 421 SNSSMQQGKGNDLPDEDIDIGGNEPPVSSYPPMEIEKDTAIKSSKRV-SPGSSSGSESSS 479
           SNSS+Q  KGND  +EDIDI GNE PVSSYPP+EIEKDT  +SSK V S   S  S  +S
Sbjct: 417 SNSSIQPCKGNDPVEEDIDIVGNEAPVSSYPPVEIEKDTEHRSSKCVLSRSFSGNSSYNS 476

Query: 480 SSDSESDDVKASSPVSASKVPKVSGHKDKLDEKTGSGDPLDVNQSVSGLDQLEHTSQQKP 539
           SS+SE D  K S PV+ S+  +       LDEKT +G+P + NQSVSG+DQLE TSQQKP
Sbjct: 477 SSESELDGAKTSKPVNISEGQESLDSGALLDEKTSAGNPCEENQSVSGVDQLEQTSQQKP 536

Query: 540 SSVESDFRQDGESAPNERQVSPDKLYRATLLKNRFADTILKAKEKTLSQGDKGDPEKLRR 599
           + VESD +QDGES   +RQVSP+KLYRA +LKNRFADTI KA+EKTL+QG+KGDPEKLRR
Sbjct: 537 NYVESDSQQDGESL-TDRQVSPEKLYRAAVLKNRFADTIFKAREKTLNQGEKGDPEKLRR 595

Query: 600 EREELELQKRK 610
           EREELE+Q+RK
Sbjct: 596 EREELEMQRRK 606

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296090258|emb|CBI40077.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356560519|ref|XP_003548539.1| PREDICTED: transcription factor GTE8-like [Glycine max] Back     alignment and taxonomy information
>gi|356560521|ref|XP_003548540.1| PREDICTED: transcription factor GTE8-like [Glycine max] Back     alignment and taxonomy information
>gi|356574042|ref|XP_003555161.1| PREDICTED: transcription factor GTE8-like [Glycine max] Back     alignment and taxonomy information
>gi|255536997|ref|XP_002509565.1| bromodomain-containing protein, putative [Ricinus communis] gi|223549464|gb|EEF50952.1| bromodomain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255540327|ref|XP_002511228.1| bromodomain-containing protein, putative [Ricinus communis] gi|223550343|gb|EEF51830.1| bromodomain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359491054|ref|XP_002279401.2| PREDICTED: LOW QUALITY PROTEIN: transcription factor GTE10-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449455878|ref|XP_004145677.1| PREDICTED: transcription factor GTE8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224136059|ref|XP_002322229.1| global transcription factor group [Populus trichocarpa] gi|222869225|gb|EEF06356.1| global transcription factor group [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query624
TAIR|locus:2086498 813 GTE8 "AT3G27260" [Arabidopsis 0.705 0.541 0.483 1.4e-120
TAIR|locus:2158564 1061 NPX1 "nuclear protein X1" [Ara 0.866 0.509 0.388 3.4e-93
TAIR|locus:2082289620 BET10 "AT3G01770" [Arabidopsis 0.517 0.520 0.424 3.3e-89
TAIR|locus:2155715590 GTE7 "AT5G65630" [Arabidopsis 0.357 0.377 0.344 2.8e-32
TAIR|locus:2142305494 AT5G46550 "AT5G46550" [Arabido 0.163 0.206 0.539 8.4e-32
TAIR|locus:2038565766 GTE4 "AT1G06230" [Arabidopsis 0.217 0.177 0.503 1.8e-30
TAIR|locus:2032692461 GTE3 "AT1G73150" [Arabidopsis 0.246 0.334 0.435 7.9e-30
TAIR|locus:2044722386 IMB1 "AT2G34900" [Arabidopsis 0.243 0.393 0.398 2.7e-25
TAIR|locus:2030958487 AT1G17790 "AT1G17790" [Arabido 0.302 0.388 0.356 1.6e-24
UNIPROTKB|C9JDL5200 BRDT "Bromodomain testis-speci 0.227 0.71 0.326 1.8e-18
TAIR|locus:2086498 GTE8 "AT3G27260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1030 (367.6 bits), Expect = 1.4e-120, Sum P(2) = 1.4e-120
 Identities = 217/449 (48%), Positives = 274/449 (61%)

Query:     2 MGKNDRFSGGYYRSNAFXXXXXXXXXXXXXRIDAEITASEDSSAPTRKCINLNPDKWDAF 61
             M ++  F GGYYR N F             +ID E+TASE+SS P RKCI LN +  D +
Sbjct:     1 MVESAAFPGGYYR-NTFEAPEESEGSGSSAQIDTEVTASENSSTPARKCIMLNSNDEDPY 59

Query:    62 GVPLQVLSLPNLSRSERKDLVHKLTSDLEQIRILQKKAGVQRTNGVTVSSSSDILSCSNG 121
             GV  QV+SL N+S+SERKDL+++L  +LEQ +I+ K A +QR N   VSS+SD +  S G
Sbjct:    60 GVQRQVISLYNMSQSERKDLIYRLKLELEQTKIVLKNAELQRMNPAAVSSTSDRVGFSTG 119

Query:   122 PN-RPKVQNSRKSLVMTCGPGKKVNPVSNNSRGWNRGTSGRFESAGKPTSTTGTGNVILM 180
                  +V NS+K      G GKKV   +  SRGWNRGTSG+FES+ K T T+ T N+ LM
Sbjct:   120 QKISSRVSNSKKPSDFAVGSGKKVRHQNGTSRGWNRGTSGKFESS-KETMTS-TPNITLM 177

Query:   181 KQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLE 240
             KQC+TLL++L SH + WVF  PVDVVK+NIPDY T IKHPMD GT+K+ +AS  YSSP E
Sbjct:   178 KQCDTLLRKLWSHPHSWVFQAPVDVVKLNIPDYLTTIKHPMDLGTVKKNLASGVYSSPHE 237

Query:   241 FLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLPVTKPQSLPEKSA-PR 299
             F ADVRLTF+NAMTYNPPG+D HIM D L K FEARWK I+KKLP    Q+LP  +  P 
Sbjct:   238 FAADVRLTFTNAMTYNPPGHDVHIMGDILSKLFEARWKTIKKKLPPCSMQTLPAVTLEPN 297

Query:   300 ANVETXXXXXXXXXXXXEIMCQEIVPTAVKPVMTDQEKHNLGRELESLLAEMPVHIIDFL 359
                +                 +E VP  VKP+MT+ E+H LGR+LESLL E+P HIIDFL
Sbjct:   298 DERKAAISVPPAKKRKMASPVRESVPEPVKPLMTEVERHRLGRQLESLLDELPAHIIDFL 357

Query:   360 REHSSNGRETGXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKQKNQANVEPCEIXXXXXXX 419
             ++H+SNG E                             + K+  Q NVEPCEI       
Sbjct:   358 KKHNSNGGEIAEDEIEIDIDVLSDEVLVTLRNLLDEYIQNKEAKQTNVEPCEIELINGSR 417

Query:   420 XXXXXMQQGKGNDLPDEDIDIGGNEPPVS 448
                  +Q  +GN++ DE +D  GNEPP+S
Sbjct:   418 PSNSSLQ--RGNEMADEYVD--GNEPPIS 442
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2158564 NPX1 "nuclear protein X1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082289 BET10 "AT3G01770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155715 GTE7 "AT5G65630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142305 AT5G46550 "AT5G46550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038565 GTE4 "AT1G06230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032692 GTE3 "AT1G73150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044722 IMB1 "AT2G34900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030958 AT1G17790 "AT1G17790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|C9JDL5 BRDT "Bromodomain testis-specific protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LK27GTE8_ARATHNo assigned EC number0.53260.92620.7109yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query624
cd0550699 cd05506, Bromo_plant1, Bromodomain, uncharacterize 1e-60
cd05498102 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik 4e-40
smart00297107 smart00297, BROMO, bromo domain 8e-35
cd0436999 cd04369, Bromodomain, Bromodomain 1e-33
cd05497107 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like 2e-30
cd05509101 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s 3e-29
cd05499102 cd05499, Bromo_BDF1_2_II, Bromodomain 8e-29
cd05500103 cd05500, Bromo_BDF1_2_I, Bromodomain 9e-25
pfam0043984 pfam00439, Bromodomain, Bromodomain 4e-24
cd0550397 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA 1e-23
cd05504115 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o 2e-23
cd05496119 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I 5e-20
cd05502109 cd05502, Bromo_tif1_like, Bromodomain; tif1_like s 6e-19
cd05511112 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf 6e-18
cd05495108 cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub 2e-17
cd0550597 cd05505, Bromo_WSTF_like, Bromodomain; Williams sy 3e-17
cd05510112 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s 8e-14
cd05515105 cd05515, Bromo_polybromo_V, Bromodomain, polybromo 1e-13
cd05528112 cd05528, Bromo_AAA, Bromodomain; sub-family co-occ 2e-13
cd0551398 cd05513, Bromo_brd7_like, Bromodomain, brd7_like s 2e-12
cd0551298 cd05512, Bromo_brd1_like, Bromodomain; brd1_like s 2e-12
COG5076371 COG5076, COG5076, Transcription factor involved in 2e-12
cd05507104 cd05507, Bromo_brd8_like, Bromodomain, brd8_like s 3e-11
cd05521106 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in 1e-10
cd05519103 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam 1e-10
cd05517103 cd05517, Bromo_polybromo_II, Bromodomain, polybrom 3e-10
cd05529128 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe 7e-10
cd05518103 cd05518, Bromo_polybromo_IV, Bromodomain, polybrom 8e-10
cd05522104 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i 1e-09
cd05520103 cd05520, Bromo_polybromo_III, Bromodomain, polybro 4e-09
cd05516107 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su 5e-09
cd05494114 cd05494, Bromodomain_1, Bromodomain; uncharacteriz 4e-08
cd05524113 cd05524, Bromo_polybromo_I, Bromodomain, polybromo 8e-08
cd0550899 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf 8e-06
cd05501102 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_li 8e-06
cd05525106 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa 2e-05
cd05492109 cd05492, Bromo_ZMYND11, Bromodomain; ZMYND11_like 0.002
cd05491119 cd05491, Bromo_TBP7_like, Bromodomain; TBP7_like s 0.004
>gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information 
 Score =  196 bits (500), Expect = 1e-60
 Identities = 65/99 (65%), Positives = 77/99 (77%)

Query: 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSP 238
           +MKQC TLL++LM H++GWVFN PVDVV + +PDY+ IIK PMD GT+K+K+    YSSP
Sbjct: 1   VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSP 60

Query: 239 LEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARW 277
            EF ADVRLTF+NAM YNPPGND H MA  L K FE RW
Sbjct: 61  EEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETRW 99

Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99
>gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>gnl|CDD|197636 smart00297, BROMO, bromo domain Back     alignment and domain information
>gnl|CDD|99922 cd04369, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain Back     alignment and domain information
>gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain Back     alignment and domain information
>gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily Back     alignment and domain information
>gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily Back     alignment and domain information
>gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily Back     alignment and domain information
>gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily Back     alignment and domain information
>gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V Back     alignment and domain information
>gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup Back     alignment and domain information
>gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily Back     alignment and domain information
>gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup Back     alignment and domain information
>gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II Back     alignment and domain information
>gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV Back     alignment and domain information
>gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III Back     alignment and domain information
>gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>gnl|CDD|99926 cd05494, Bromodomain_1, Bromodomain; uncharacterized subfamily Back     alignment and domain information
>gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I Back     alignment and domain information
>gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily Back     alignment and domain information
>gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily Back     alignment and domain information
>gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family Back     alignment and domain information
>gnl|CDD|99924 cd05492, Bromo_ZMYND11, Bromodomain; ZMYND11_like sub-family Back     alignment and domain information
>gnl|CDD|99923 cd05491, Bromo_TBP7_like, Bromodomain; TBP7_like subfamily, limited to fungi Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 624
KOG1474640 consensus Transcription initiation factor TFIID, s 100.0
cd05496119 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub 99.94
cd05495108 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb 99.94
cd05497107 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily 99.94
cd0550597 Bromo_WSTF_like Bromodomain; Williams syndrome tra 99.93
cd0550699 Bromo_plant1 Bromodomain, uncharacterized subfamil 99.93
cd0550397 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s 99.93
cd05498102 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil 99.93
cd05507104 Bromo_brd8_like Bromodomain, brd8_like subgroup. I 99.92
cd05504115 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li 99.92
cd05499102 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam 99.92
cd05500103 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami 99.92
cd05501102 Bromo_SP100C_like Bromodomain, SP100C_like subfami 99.92
cd05502109 Bromo_tif1_like Bromodomain; tif1_like subfamily. 99.92
cd05509101 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. 99.91
cd05510112 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. 99.91
cd0550899 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC 99.91
cd05516107 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s 99.9
cd0551398 Bromo_brd7_like Bromodomain, brd7_like subgroup. T 99.9
cd0551298 Bromo_brd1_like Bromodomain; brd1_like subfamily. 99.9
cd05528112 Bromo_AAA Bromodomain; sub-family co-occurring wit 99.9
cd05511112 Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum 99.9
cd05519103 Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci 99.89
cd05515105 Bromo_polybromo_V Bromodomain, polybromo repeat V. 99.88
cd05524113 Bromo_polybromo_I Bromodomain, polybromo repeat I. 99.88
cd05529128 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like 99.87
smart00297107 BROMO bromo domain. 99.87
cd05525106 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 99.87
cd05520103 Bromo_polybromo_III Bromodomain, polybromo repeat 99.86
cd05517103 Bromo_polybromo_II Bromodomain, polybromo repeat I 99.86
cd05518103 Bromo_polybromo_IV Bromodomain, polybromo repeat I 99.86
cd0436999 Bromodomain Bromodomain. Bromodomains are found in 99.83
PF0043984 Bromodomain: Bromodomain; InterPro: IPR001487 Brom 99.83
cd05522104 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l 99.83
cd05521106 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik 99.83
cd05492109 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family 99.82
cd05526110 Bromo_polybromo_VI Bromodomain, polybromo repeat V 99.71
COG5076371 Transcription factor involved in chromatin remodel 99.67
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 99.65
KOG1472720 consensus Histone acetyltransferase SAGA/ADA, cata 99.41
cd05494114 Bromodomain_1 Bromodomain; uncharacterized subfami 99.32
cd05491119 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, 98.93
KOG09551051 consensus PHD finger protein BR140/LIN-49 [General 98.92
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 98.82
KOG00081563 consensus Transcription initiation factor TFIID, s 98.73
KOG1827 629 consensus Chromatin remodeling complex RSC, subuni 98.73
KOG1474 640 consensus Transcription initiation factor TFIID, s 98.55
KOG00081563 consensus Transcription initiation factor TFIID, s 98.53
KOG1472720 consensus Histone acetyltransferase SAGA/ADA, cata 98.38
KOG1828418 consensus IRF-2-binding protein CELTIX-1, contains 97.89
KOG1828418 consensus IRF-2-binding protein CELTIX-1, contains 97.76
COG5076371 Transcription factor involved in chromatin remodel 96.59
cd05493131 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- 95.02
PF05110 1191 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 92.05
KOG06441113 consensus Uncharacterized conserved protein, conta 88.67
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 84.1
PHA033081463 transcriptional regulator ICP4; Provisional 83.38
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-42  Score=392.92  Aligned_cols=509  Identities=26%  Similarity=0.354  Sum_probs=317.1

Q ss_pred             CCCCCCCCCCcccccccccCCC-CCCCCCCCc-ccccccccCCCCcccccccccCCCCCCCCCcceeeecCCCCCHHHHH
Q 006954            2 MGKNDRFSGGYYRSNAFETTGE-SEGSGSSGR-IDAEITASEDSSAPTRKCINLNPDKWDAFGVPLQVLSLPNLSRSERK   79 (624)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~rk~~~~n~~~~~~f~v~~~~~~ls~~s~~er~   79 (624)
                      .+ +.-|+++++. .+|++++. ++.++.++. |..--.+++....++.+|+...-..-..+.++..++++..++..|++
T Consensus        45 e~-n~~~~~~~~~-~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  122 (640)
T KOG1474|consen   45 EN-NYYFSASECI-ADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDKSSVGPKASKIPLDKDSSSQVR  122 (640)
T ss_pred             cc-CccccHhhhh-hhccccccchhcccCCccchhhccccchhhcccccccccccccCCcccccccccCcCCCCchhhhh
Confidence            44 6778888777 89999996 555555554 54444588888899999998887777779999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccCCcccCC---CcccccCCCCCCCCCccccccccccccC-CCCC-CCCCCCCCCCC
Q 006954           80 DLVHKLTSDLEQIRILQKKAGVQRTNGVTVSS---SSDILSCSNGPNRPKVQNSRKSLVMTCG-PGKK-VNPVSNNSRGW  154 (624)
Q Consensus        80 ~L~~rl~~Ele~vR~l~~kie~~~~~~~~~s~---~~~~~s~~~~~~~~~~~~~~~s~~~~s~-~~kk-~~~~~~~~~g~  154 (624)
                      +|..||+.+|++||.+.++++.... ....++   ........++.   ..    ........ ..+. +.++.+...+.
T Consensus       123 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~----~~d~~~~~~~~~~~~~~~~~~~~~~  194 (640)
T KOG1474|consen  123 KLSERLKQELQQVRPLTKAVEFSPE-PSVVSPVSPASQPFKSKNGV---KK----VADTCVKSYKSKSEREPSPGQKREG  194 (640)
T ss_pred             hhhhccccccccCCccccccccccc-ccccCCCCCcccccccccch---hh----hhccccccccccCcCCCCccccccc
Confidence            9999999999999999999972211 111111   11100000000   00    00000000 0000 00000000000


Q ss_pred             CCCCCCCCC---CCC-CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHH
Q 006954          155 NRGTSGRFE---SAG-KPTSTTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKM  230 (624)
Q Consensus       155 ~r~~~gr~~---~~~-~~~~~~~~~~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL  230 (624)
                      .-...+...   ... ............++++|..||..||+|+++|+|+.|||++.+++||||.||+|||||+|||+||
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL  274 (640)
T KOG1474|consen  195 TVAPNSSRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKL  274 (640)
T ss_pred             cccCccccccccccccccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhh
Confidence            000000000   000 1111234456899999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCcchhhhhhhcCCc
Q 006954          231 ASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLPVTKPQSLPEKSAPRANVETAKAIPP  310 (624)
Q Consensus       231 ~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~ie~~~P~~~~~~~~~~~~~~~~~~~~~~~pp  310 (624)
                      .++.|.++.+|++||||||.||++||++||+||.||..|+.+|+.+|+.+..++...............  .........
T Consensus       275 ~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  352 (640)
T KOG1474|consen  275 EKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMAS--SDQIPSNSV  352 (640)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc--ccccccccc
Confidence            999999999999999999999999999999999999999999999999874433211100000000000  000000111


Q ss_pred             chhhhhhcccccCCcCCCCCCCCHHHHHHHHHHHhhcCCcChHHHHHHHHhhcCCCCCCCCCeEEEeCCCCCHHHHHHHH
Q 006954          311 AKRKKIEIMCQEIVPTAVKPVMTDQEKHNLGRELESLLAEMPVHIIDFLREHSSNGRETGEDEIEIDIDDLSNDTLLTLR  390 (624)
Q Consensus       311 ~KkrK~~~~~~~~~~ep~~r~MT~eEK~~L~~~I~~Lp~E~l~~IV~II~k~~p~l~~~~~dEIEIDIdsL~~eTL~eL~  390 (624)
                      ...+...........++....|+.+|+..+...+..++.+...+++..++............++++++..+.+.  |.+.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~  430 (640)
T KOG1474|consen  353 EGPRSSSFESRESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTG--KLIK  430 (640)
T ss_pred             cCcccccchhcccccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchh--hhhh
Confidence            11112211122223344567899999999999999999999999999999766555444446666666666555  3322


Q ss_pred             --HHHHHHHHHHhhhccCCCchhhhhhhcccCCCCccccCCCCCCCCcccCCCCCCCCCCCCCCcccccccccCCCCCCC
Q 006954          391 --KLLDDYLEEKQKNQANVEPCEIELLNESGLSNSSMQQGKGNDLPDEDIDIGGNEPPVSSYPPMEIEKDTAIKSSKRVS  468 (624)
Q Consensus       391 --~yV~~~L~~k~k~~~k~e~~E~e~~~~sg~~ns~~~~~k~~e~~dEdvdIgg~~~p~~~~~pv~iekd~~~~sss~ss  468 (624)
                        ...........+..+..+.                     ..+.+..+++   .+|...-..++|.+-          
T Consensus       431 ~~~~~~~~~~~~~r~~t~~~~---------------------~~l~~~~~~~---~~p~~l~~~~~~~~~----------  476 (640)
T KOG1474|consen  431 EKNKKEKAANENKRDMTAPEK---------------------AKLKELLQNL---LPPNKLESIVEILKP----------  476 (640)
T ss_pred             hhhcccccccccccccccccc---------------------ccchhhccCC---CCCccccCcccccch----------
Confidence              1111112222222222221                     1223333332   122211112222200          


Q ss_pred             CCCCCCCCCCCCCCCCcccccCCCCCccCCCCcccCCCCccccccCCCCCCCcccccccccccccccCCCCCCcc-cccc
Q 006954          469 PGSSSGSESSSSSDSESDDVKASSPVSASKVPKVSGHKDKLDEKTGSGDPLDVNQSVSGLDQLEHTSQQKPSSVE-SDFR  547 (624)
Q Consensus       469 ssSSSsS~S~SSs~S~Sd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  547 (624)
                                                                           ......|.+.....+.+-..++ +++.
T Consensus       477 -----------------------------------------------------~~~~~~l~~~~~~~~~~~~~vd~~~~~  503 (640)
T KOG1474|consen  477 -----------------------------------------------------EKRQLDLSQNDDEIELDLDSVDGSQSR  503 (640)
T ss_pred             -----------------------------------------------------hhhcccccccccchhhccccccccccc
Confidence                                                                 0011122222222222333322 2333


Q ss_pred             cCCCCCCCCCCCChhHHHHHHHhhhhhHHHHHHhhh-ccccc-CCCCChHHHHHHHHHHHHHHhhccccee
Q 006954          548 QDGESAPNERQVSPDKLYRATLLKNRFADTILKAKE-KTLSQ-GDKGDPEKLRREREELELQKRKGLTFTI  616 (624)
Q Consensus       548 ~~~~~~~~~~~~~~~k~~raa~l~~r~ad~i~ka~~-~~~~~-~~~~dp~~~~~~~~e~e~~~~~~~~~~~  616 (624)
                      .++     .-+...+++|++..|.++|++-+.+|++ +.+-+ ....+|+++.+.+++.+.+.+.++++..
T Consensus       504 ~~~-----~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  569 (640)
T KOG1474|consen  504 EPS-----SNPLEIETIRETLKLSTERELELSKASSSRSLMRNRSGSLPERLSRSISEEKLREKSEKSSSE  569 (640)
T ss_pred             CCC-----cccchhhhhhccccchhhHHHHHHHHhhhhhhccCcccccccchhhhhhHHhhhhhhHhhhhh
Confidence            333     5567799999999999999999999999 77666 4556999999999999999988887643

>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily Back     alignment and domain information
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup Back     alignment and domain information
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>cd05499 Bromo_BDF1_2_II Bromodomain Back     alignment and domain information
>cd05500 Bromo_BDF1_2_I Bromodomain Back     alignment and domain information
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily Back     alignment and domain information
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily Back     alignment and domain information
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily Back     alignment and domain information
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily Back     alignment and domain information
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup Back     alignment and domain information
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily Back     alignment and domain information
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily Back     alignment and domain information
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V Back     alignment and domain information
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I Back     alignment and domain information
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>smart00297 BROMO bromo domain Back     alignment and domain information
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family Back     alignment and domain information
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III Back     alignment and domain information
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II Back     alignment and domain information
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV Back     alignment and domain information
>cd04369 Bromodomain Bromodomain Back     alignment and domain information
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] Back     alignment and domain information
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family Back     alignment and domain information
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily Back     alignment and domain information
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] Back     alignment and domain information
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] Back     alignment and domain information
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins Back     alignment and domain information
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian) Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA03308 transcriptional regulator ICP4; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query624
2oss_A127 Crystal Structure Of The Bromo Domain 1 In Human Br 7e-21
3jvj_A131 Crystal Structure Of The Bromodomain 1 In Mouse Brd 7e-21
4hbw_A127 Crystal Structure Of The First Bromodomain Of Human 8e-21
4don_A145 Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihy 1e-20
2g4a_A116 Solution Structure Of A Bromodomain From Ring3 Prot 2e-20
2dvv_A112 Crystal Structure Of The Second Bromodomain Of The 3e-20
3oni_A114 Crystal Structure Of The Second Bromodomain Of Huma 4e-20
4a9e_A154 N-Terminal Bromodomain Of Human Brd2 With 3-Methyl- 8e-20
2ydw_A153 Crystal Structure Of The First Bromodomain Of Human 1e-19
2rfj_A119 Crystal Structure Of The Bromo Domain 1 In Human Br 3e-19
2l5e_A128 Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt 5e-19
2yw5_A138 Solution Structure Of The Bromodomain From Human Br 6e-19
2nxb_A123 Crystal Structure Of Human Bromodomain Containing P 6e-19
2i8n_A114 Solution Structure Of The Second Bromodomain Of Brd 1e-18
2e7n_A117 Solution Structure Of The Second Bromodomain From H 2e-18
3jvl_A120 Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Le 3e-18
2oo1_A113 Crystal Structure Of The Bromo Domain 2 Of Human Br 3e-18
2wp1_A126 Structure Of Brdt Bromodomain 2 Bound To An Acetyla 4e-18
2wp2_A120 Structure Of Brdt Bromodomain Bd1 Bound To A Diacet 1e-17
2lsp_B128 Solution Structures Of Brd4 Second Bromodomain With 3e-17
2ouo_A130 Crystal Structure Of The Bromo Domain 2 In Human Br 3e-17
1x0j_A122 Crystal Structure Analysis Of The N-Terminal Bromod 1e-16
3aqa_A128 Crystal Structure Of The Human Brd2 Bd1 Bromodomain 2e-16
2dww_A114 Crystal Structure Of Bromodomain-Containing Protein 6e-16
2yyn_A135 Crystal Sturcture Of Human Bromodomain Protein Leng 1e-14
3q2e_A123 Crystal Structure Of The Second Bromodomain Of Huma 5e-14
3g0l_A117 Crystal Structure Of Human Bromodomain Adjacent To 8e-14
3gg3_A119 Crystal Structure Of The Bromodomain Of Human Pcaf 9e-14
1n72_A118 Structure And Ligand Of A Histone Acetyltransferase 1e-13
2e7o_A112 Solution Structure Of The Bromodomain From Human Br 2e-13
3qzv_A174 Crystal Structure Of Bptf Phd-Linker-Bromo In Compl 4e-13
2ri7_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 5e-13
1e6i_A121 Bromodomain From Gcn5 Complexed With Acetylated H4 6e-13
3o33_A184 Crystal Structure Of Trim24 Phd-Bromo In The Free S 7e-13
3uv2_A126 Crystal Structure Of The Bromodomain Of Human Nucle 8e-13
3qzs_A115 Crystal Structure Of Bptf Bromo In Complex With His 9e-13
3qzt_A115 Crystal Structure Of Bptf Bromo In Complex With His 1e-12
3mb3_A135 Crystal Structure Of The Second Bromodomain Of Plec 2e-12
2f6j_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 1e-11
1f68_A103 Nmr Solution Structure Of The Bromodomain From Huma 2e-11
3hme_A123 Crystal Structure Of Human Bromodomain Containing 9 2e-11
3u5m_A207 Crystal Structure Of Trim33 Phd-Bromo In The Free S 2e-11
3d7c_A112 Crystal Structure Of The Bromodomain Of Human Gcn5, 3e-11
1jsp_B121 Nmr Structure Of Cbp Bromodomain In Complex With P5 1e-10
3dwy_A119 Crystal Structure Of The Bromodomain Of Human Crebb 1e-10
3fkm_X166 Plasmodium Falciparum Bromodomain-Containing Protei 2e-10
3i3j_A124 Crystal Structure Of The Bromodomain Of Human Ep300 2e-10
3aad_A292 Structure Of The Histone Chaperone Cia/asf1-double 1e-08
3uv5_A265 Crystal Structure Of The Tandem Bromodomains Of Hum 2e-08
1eqf_A280 Crystal Structure Of The Double Bromodomain Module 2e-08
2ktb_B121 Solution Structure Of The Second Bromodomain Of Hum 2e-08
3ljw_A120 Crystal Structure Of The Second Bromodomain Of Huma 3e-08
3nxb_A116 Crystal Structure Of The Bromodomain Of Human Cecr2 3e-08
3hmf_A116 Crystal Structure Of The Second Bromodomain Of Huma 3e-08
3uv4_A158 Crystal Structure Of The Second Bromodomain Of Huma 6e-08
2i7k_A117 Solution Structure Of The Bromodomain Of Human Brd7 9e-08
3hmh_A155 Crystal Structure Of The Second Bromodomain Of Huma 3e-07
2d9e_A121 Solution Structure Of The Bromodomain Of Peregrin L 3e-07
3rcw_A135 Crystal Structure Of The Bromodomain Of Human Brd1 3e-07
3lxj_A136 Crystal Structure Of The Bromodomain Of Human Aaa D 4e-07
3dai_A130 Crystal Structure Of The Bromodomain Of The Human A 1e-06
2dkw_A131 Solution Structure Of The Bromodomain Of Human Prot 2e-06
2grc_A129 1.5 A Structure Of Bromodomain From Human Brg1 Prot 4e-06
3tlp_A150 Crystal Structure Of The Fourth Bromodomain Of Huma 4e-06
2h60_A128 Solution Structure Of Human Brg1 Bromodomain Length 5e-06
3uvd_A124 Crystal Structure Of The Bromodomain Of Human Trans 5e-06
3g0j_A124 Crystal Structure Of The Fifth Bromodomain Of Human 2e-05
2dat_A123 Solution Structure Of The Bromodomain Of Human SwiS 3e-05
2r10_A361 Structure Of An Acetylated Rsc4 Tandem Bromodomain 3e-05
2yqd_A120 Solution Structure Of The Fifth Bromodomain From Mo 3e-05
2r0v_A346 Structure Of The Rsc4 Tandem Bromodomain Acetylated 4e-05
3k2j_A130 Crystal Structure Of The 3rd Bromodomain Of Human P 3e-04
2r0y_A311 Structure Of The Rsc4 Tandem Bromodomain In Complex 6e-04
2r0s_A285 Crystal Structure Of The Rsc4 Tandem Bromodomain Le 6e-04
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein 4 (Brd4) Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 166 GKPTSTTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGT 225
            KP   T     +L      +LK L  HQ+ W F  PVD VK+N+PDYY IIK PMD GT
Sbjct: 13  NKPKRQTNQLQYLL----RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGT 68
Query: 226 IKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFF 273
           IK+++ +N Y +  E + D    F+N   YN PG+D  +MA+ L K F
Sbjct: 69  IKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLF 116
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4 Length = 131 Back     alignment and structure
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In Complex With A Quinazoline Ligand Length = 127 Back     alignment and structure
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihydro-3-methyl-2(1h)- Quinazolinon Length = 145 Back     alignment and structure
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein Length = 116 Back     alignment and structure
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human Brd2 Protein Length = 112 Back     alignment and structure
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In Complex With The Inhibitor Jq1 Length = 114 Back     alignment and structure
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154 Back     alignment and structure
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153 Back     alignment and structure
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119 Back     alignment and structure
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128 Back     alignment and structure
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138 Back     alignment and structure
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123 Back     alignment and structure
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4 Length = 114 Back     alignment and structure
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human Bromodomain-Containing Protein 3 Length = 117 Back     alignment and structure
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Length = 120 Back     alignment and structure
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human Bromodomain Containing Protein 3 (Brd3) Length = 113 Back     alignment and structure
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated Histone H3 Peptide Length = 126 Back     alignment and structure
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated Histone H4 Peptide. Length = 120 Back     alignment and structure
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With Nf-Kb-K310ac Peptide Length = 128 Back     alignment and structure
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human Bromodomain Containing Protein 4 (Brd4) Length = 130 Back     alignment and structure
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain Of Human Brd2 Length = 122 Back     alignment and structure
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In Complex With A Brd2-Interactive Compound, Bic1 Length = 128 Back     alignment and structure
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4 Length = 114 Back     alignment and structure
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein Length = 135 Back     alignment and structure
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Bromodomain And Wd Repeat-Containing Protein 1 Isoform A (Wdr9) Length = 123 Back     alignment and structure
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc Finger Domain 2b (Baz2b) Length = 117 Back     alignment and structure
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119 Back     alignment and structure
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118 Back     alignment and structure
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Adjacent To Zinc Finger Domain 2b Length = 112 Back     alignment and structure
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 Back     alignment and structure
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 Back     alignment and structure
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121 Back     alignment and structure
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 Back     alignment and structure
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126 Back     alignment and structure
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115 Back     alignment and structure
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115 Back     alignment and structure
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin Homology Domain Interacting Protein (Phip) Length = 135 Back     alignment and structure
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 Back     alignment and structure
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5 Length = 103 Back     alignment and structure
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9 Isoform 1 (Brd9) Length = 123 Back     alignment and structure
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 Back     alignment and structure
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The General Control Of Amino-Acid Synthesis Protein 5-Like 2 Length = 112 Back     alignment and structure
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53 Peptide Length = 121 Back     alignment and structure
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp Length = 119 Back     alignment and structure
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein Pf10_0328 Length = 166 Back     alignment and structure
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300 Length = 124 Back     alignment and structure
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292 Back     alignment and structure
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265 Back     alignment and structure
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280 Back     alignment and structure
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121 Back     alignment and structure
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120 Back     alignment and structure
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116 Back     alignment and structure
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 Back     alignment and structure
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 158 Back     alignment and structure
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7 Protein Length = 117 Back     alignment and structure
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l) Length = 155 Back     alignment and structure
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin Length = 121 Back     alignment and structure
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1 Length = 135 Back     alignment and structure
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain Containing 2b (Atad2b) Length = 136 Back     alignment and structure
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2 Length = 130 Back     alignment and structure
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein Kiaa1240 Length = 131 Back     alignment and structure
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A Central Atpase Of SwiSNF REMODELING COMPLEX Length = 129 Back     alignment and structure
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 150 Back     alignment and structure
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain Length = 128 Back     alignment and structure
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human Transcription Activator Brg1 (Smarca4) In Complex With N-Methyl-2-Pyrrolidone Length = 124 Back     alignment and structure
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 124 Back     alignment and structure
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF Related Matrix Associated Actin Dependent Regulator Of Cromatin Subfamily A Member 2 Length = 123 Back     alignment and structure
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone Chimera Length = 361 Back     alignment and structure
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse Polybromo-1 Length = 120 Back     alignment and structure
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25 Length = 346 Back     alignment and structure
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 130 Back     alignment and structure
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With An Acetylated H3 Peptide Length = 311 Back     alignment and structure
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain Length = 285 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query624
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 4e-54
4alg_A154 Bromodomain-containing protein 2; signaling protei 2e-53
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 7e-53
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 8e-53
3fkm_X166 Signaling protein; bromodomain, malaria, structura 1e-52
3p1f_A119 CREB-binding protein; structural genomics consorti 2e-52
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 1e-51
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 3e-50
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 6e-50
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 2e-48
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 6e-47
3d7c_A112 General control of amino acid synthesis protein 5; 8e-47
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 1e-46
3nxb_A116 CAT eye syndrome critical region protein 2; struct 2e-45
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 8e-45
3uv4_A158 Second bromodomain of human transcription initiat 9e-44
2d9e_A121 Peregrin; four-helix bundle, transcription activat 2e-43
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 1e-42
3rcw_A135 Bromodomain-containing protein 1; transcription, s 1e-42
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 2e-42
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 3e-40
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 3e-33
3dai_A130 ATPase family AAA domain-containing protein 2; anc 2e-39
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 3e-39
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 6e-39
3aad_A292 Transcription initiation factor TFIID subunit 1; p 1e-38
3aad_A292 Transcription initiation factor TFIID subunit 1; p 9e-32
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 3e-36
2grc_A129 Probable global transcription activator SNF2L4; br 9e-35
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 9e-35
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 6e-34
2dat_A123 Possible global transcription activator SNF2L2; br 8e-34
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 2e-33
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 2e-30
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 2e-29
2r0y_A311 Chromatin structure-remodeling complex protein RSC 2e-29
2r0y_A311 Chromatin structure-remodeling complex protein RSC 1e-21
2r10_A361 Chromatin structure-remodeling complex protein RSC 9e-28
2r10_A361 Chromatin structure-remodeling complex protein RSC 4e-18
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 2e-23
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 2e-23
2jns_A90 Bromodomain-containing protein 4; ET-domain, struc 1e-15
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 6e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Length = 120 Back     alignment and structure
 Score =  179 bits (456), Expect = 4e-54
 Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 180 MKQCETLLKRLMSHQ---YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS 236
           +K C  +LK + + +   Y W F  PVDV  + + DY  IIKHPMD  TIK K+ S  Y 
Sbjct: 11  LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYR 70

Query: 237 SPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKL 284
              EF ADVRL FSN   YNPP ++   MA  L+  FE R+  +  + 
Sbjct: 71  DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEP 118
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Length = 154 Back     alignment and structure
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Length = 127 Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Length = 130 Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Length = 166 Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Length = 119 Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 135 Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Length = 123 Back     alignment and structure
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Length = 117 Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Length = 121 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Length = 112 Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} Length = 116 Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Length = 123 Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Length = 158 Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 121 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Length = 135 Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Length = 117 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Length = 130 Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Length = 120 Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Length = 150 Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Length = 129 Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130 Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Length = 124 Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116 Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147 Back     alignment and structure
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 90 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query624
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 99.95
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 99.94
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 99.94
3fkm_X166 Signaling protein; bromodomain, malaria, structura 99.94
3d7c_A112 General control of amino acid synthesis protein 5; 99.94
3p1f_A119 CREB-binding protein; structural genomics consorti 99.94
4alg_A154 Bromodomain-containing protein 2; signaling protei 99.94
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 99.94
2d9e_A121 Peregrin; four-helix bundle, transcription activat 99.94
3nxb_A116 CAT eye syndrome critical region protein 2; struct 99.94
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 99.94
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 99.93
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 99.93
2dat_A123 Possible global transcription activator SNF2L2; br 99.93
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 99.93
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 99.93
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 99.93
2grc_A129 Probable global transcription activator SNF2L4; br 99.93
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.93
3rcw_A135 Bromodomain-containing protein 1; transcription, s 99.93
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.92
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 99.92
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 99.92
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.92
3uv4_A158 Second bromodomain of human transcription initiat 99.91
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 99.9
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 99.9
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.9
3dai_A130 ATPase family AAA domain-containing protein 2; anc 99.9
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 99.88
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 99.88
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 99.88
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 99.88
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 99.86
3aad_A292 Transcription initiation factor TFIID subunit 1; p 99.86
3aad_A292 Transcription initiation factor TFIID subunit 1; p 99.85
2r0y_A311 Chromatin structure-remodeling complex protein RSC 99.82
2r10_A361 Chromatin structure-remodeling complex protein RSC 99.82
2r10_A361 Chromatin structure-remodeling complex protein RSC 99.8
2r0y_A311 Chromatin structure-remodeling complex protein RSC 99.76
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.71
2jns_A90 Bromodomain-containing protein 4; ET-domain, struc 99.68
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 99.42
2lm0_A125 AF4/FMR2 family member 1/protein AF-9 chimera; int 93.3
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Back     alignment and structure
Probab=99.95  E-value=1.1e-27  Score=220.28  Aligned_cols=105  Identities=42%  Similarity=0.768  Sum_probs=100.5

Q ss_pred             cHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhccc
Q 006954          176 NVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY  255 (624)
Q Consensus       176 ~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y  255 (624)
                      ..++...|..||..|++|+.+|+|..|||+.++.+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus        19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y   98 (127)
T 2oss_A           19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY   98 (127)
T ss_dssp             CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            46777888999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954          256 NPPGNDFHIMADTLRKFFEARWKAI  280 (624)
Q Consensus       256 N~~~S~V~~~A~~L~~~Fe~~~k~i  280 (624)
                      |+++|.||.+|..|++.|++.|+++
T Consensus        99 N~~~s~i~~~A~~L~~~f~~~~~~l  123 (127)
T 2oss_A           99 NKPGDDIVLMAEALEKLFLQKINEL  123 (127)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999865
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Back     alignment and structure
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Back     alignment and structure
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 624
d3dwya1114 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { 2e-33
d1eqfa1139 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain 8e-33
d1e6ia_111 a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c 2e-32
d3d7ca1102 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T 4e-32
d1wuma1118 a.29.2.1 (A:715-832) P300/CAF histone acetyltransf 9e-30
d1eqfa2128 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain 2e-29
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: CREB-binding protein, CBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 2e-33
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 1/107 (0%)

Query: 179 LMKQCETLLKRLMSHQ-YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSS 237
           L +     L+ L         F  PVD   + IPDY+ I+K+PMD  TIK K+ +  Y  
Sbjct: 7   LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQE 66

Query: 238 PLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKL 284
           P +++ DV L F+NA  YN   +  +     L + FE     + + L
Sbjct: 67  PWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSL 113
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 Back     information, alignment and structure
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 Back     information, alignment and structure
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query624
d3d7ca1102 GCN5 {Human (Homo sapiens) [TaxId: 9606]} 99.93
d3dwya1114 CREB-binding protein, CBP {Human (Homo sapiens) [T 99.93
d1e6ia_111 GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.93
d1eqfa1139 TAFII250 double bromodomain module {Human (Homo sa 99.92
d1wuma1118 P300/CAF histone acetyltransferase bromodomain {Hu 99.92
d1eqfa2128 TAFII250 double bromodomain module {Human (Homo sa 99.91
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: GCN5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-26  Score=203.77  Aligned_cols=100  Identities=34%  Similarity=0.643  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCC
Q 006954          178 ILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP  257 (624)
Q Consensus       178 ~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~  257 (624)
                      ++...|..||..|++|+.+++|..||++.  .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+
T Consensus         2 ~L~~~l~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~   79 (102)
T d3d7ca1           2 QLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP   79 (102)
T ss_dssp             HHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHhCCCCCccCCCCChh--hCcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCC
Confidence            57899999999999999999999999964  8999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q 006954          258 PGNDFHIMADTLRKFFEARWKA  279 (624)
Q Consensus       258 ~~S~V~~~A~~L~~~Fe~~~k~  279 (624)
                      ++|.+|.+|..|+++|+++|++
T Consensus        80 ~~s~~~~~A~~l~~~f~~~~ke  101 (102)
T d3d7ca1          80 PDSEYCRCASALEKFFYFKLKE  101 (102)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998874
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure