Citrus Sinensis ID: 006959

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620----

MKGGGGGGGGGAVLVTTGKRRWRSLVIGVLFLVILSMLVPLAFLLGLHNGFHSPNPNPNGYVPVHKTSIVNYRSTRINDLVKKLAPNISKDVRSNFPDGAKTETSDMSATDTSHHSKVTPVSPPAVPQSLPNTSNSKIAGTVADSGRGGVDENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP

cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHcccccccccccccccccccEEEEEEEcccccEEEEEEEEEcccccccccEEEEEEEccccHHHHHHHHHHcccccEEEEEEcccHHHHcccHHHHHHHHccccEEEEEEccccccccccccccccHHHHHHHccccccccccEEEEEEccEEEccccHHHHcccccccEEEEEEEcccccHHHHHHcccccccccccccccccEEEEHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccEEEccccHHccccccccccccccccccEEEEccccccccccccccccHHHHHHHHccccHHHHHccccc

ccccccccccccEEccccHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHcccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHccccccHHccccccEEEEEEcccEHHEEEEEHHHHHcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEHHHcccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcHHccEEEEEcccEEEEEccHHHHcEcccccEcccHHcccccHHHHHHHHccccccccHHHHHccccEEcHHHHHHHcHHHHHHHHHHHHcccccEEEcccccccEEEEcccccccccccEEEcccccccccHHHHHccEEEEEccccccHHHHccHcccHHHHHHcccccHHHHHccccc

mkgggggggggAVLVTTGKRRWRSLVIGVLFLVILSMLVPLAFLLglhngfhspnpnpngyvpvhkTSIVNYRSTRINDLVKKlapniskdvrsnfpdgaktetsdmsatdtshhskvtpvsppavpqslpntsnskiagtvadsgrggvdenencelkfgsyCLWRREHREEMKDTMVKKLKDQLFVARAYypsiaklpsqDKLTRALRQNIQEVERVLsesatdvdlppgiEKKIQRMEAAITKAksvpvdcsnvdKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMelsqadrfsdpslhhyVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLlsvdgpsihskMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWdinmggkvngAVQSCSVSLGQLksylgensydknscawmsglnivDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWalsglghdygLNIEAIKKAAVLHYNgnmkpwlelgIPRYKKFWKKFLNQEDQLLSECNVHP

mkggggggggGAVLVTTGKRRWRSLVIGVLFLVILSMLVPLAFLLGLHNGFHSPNPNPNGYVPVHKTSIVNYRSTRINDLVKklapniskdvrsnfpdgaktetSDMSATDTSHHSKVTPVSPPAVPQSLPNTSNSKIAGTVADsgrggvdenencelkfgsycLWRREHREEMKDTMVKKLKDQLFVARAYYpsiaklpsqdkLTRALRQNIQEVervlsesatdvdlppgiEKKIQRMEAAITkaksvpvdcsnvDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDqllsecnvhp

MKgggggggggAVLVTTGKRRWRSLVIGVLFLVILSMLVPLAFLLGLHNGFHSPNPNPNGYVPVHKTSIVNYRSTRINDLVKKLAPNISKDVRSNFPDGAKTETSDMSATDTSHHSKVTPVSPPAVPQSLPNTSNSKIAGTVADSGRGGVDENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTkvvvldddvvvqkdlSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP

*************LVTTGKRRWRSLVIGVLFLVILSMLVPLAFLLGLHNGFHSPNPNPNGYVPVHKTSIVNYRSTRINDLVKKL**********************************************************************NCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKL********************************************ITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQ*********

********************RWRSLVIGVLFLVILSMLVPLAFLLGLHNG******************************************************************************************************************************TMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQ************************RMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEY*******************SLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH*

**********GAVLVTTGKRRWRSLVIGVLFLVILSMLVPLAFLLGLHNGFHSPNPNPNGYVPVHKTSIVNYRSTRINDLVKKLAPNISKDVRSNFPDGAK**************************QSLPNTSNSKIAGTVADSGRGGVDENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREV*********VALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP

************VLVTTGKRRWRSLVIGVLFLVILSMLVPLAFLLGLHNGFHSPNPNPNGYVPVHKTSIVNY*********************************************************************************ENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP

iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		624	2.2.26 [Sep-21-2011]
Q9ZVI7		619	Probable galacturonosyltr	yes	no	0.942	0.949	0.600	0.0
Q93ZX7		616	Probable galacturonosyltr	no	no	0.817	0.827	0.375	3e-98
Q9LE59		673	Polygalacturonate 4-alpha	no	no	0.740	0.686	0.352	5e-95
Q0WQD2		680	Probable galacturonosyltr	no	no	0.737	0.676	0.380	3e-93
Q8RXE1		610	Probable galacturonosyltr	no	no	0.786	0.804	0.346	1e-81
Q9M9Y5		589	Probable galacturonosyltr	no	no	0.695	0.736	0.356	1e-79
Q949Q1		537	Probable galacturonosyltr	no	no	0.697	0.810	0.341	2e-69
Q9ZPZ1		528	Putative galacturonosyltr	no	no	0.701	0.829	0.328	4e-68
Q9LSG3		559	Galacturonosyltransferase	no	no	0.607	0.677	0.326	1e-60
Q9SKT6		536	Probable galacturonosyltr	no	no	0.706	0.822	0.324	4e-59

>sp\|Q9ZVI7\|GAUT7_ARATH Probable galacturonosyltransferase 7 OS=Arabidopsis thaliana GN=GAUT7 PE=1 SV=2	Back alignment and function desciption

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/623 (60%), Positives = 467/623 (74%), Gaps = 35/623 (5%)

Query: 19  KRRWRSLVIGVLFLVILSMLVPLAFLLGLHNGFHSPNPNPNGYVPVHKTSI------VNY 72
           KRRW+ LVIGVL LVILSMLVPLAFLLGLHNGFHSP     G+V V   S       +N 
Sbjct: 15  KRRWKVLVIGVLVLVILSMLVPLAFLLGLHNGFHSP-----GFVTVQPASSFESFTRINA 69

Query: 73  R-------STRINDLVKKLAPNISKDVRSNFPDGAKTETSDMSATD-TSHHSKVTPVSPP 124
                   S R++++++K+ P + K  +S+   G++    D++AT  T    +  PVSP 
Sbjct: 70  TKHTQRDVSERVDEVLQKINPVLPK--KSDINVGSR----DVNATSGTDSKKRGLPVSPT 123

Query: 125 AVPQSLP-NTSNSKIAGTVADSGRGGVDEN-ENCELKFGSYCLWRREHREEMKDTMVKKL 182
            V    P N + S+ + T         DE    CE+K+GSYCLWR E++E MKD  VK++
Sbjct: 124 VVANPSPANKTKSEASYTGVQRKIVSGDETWRTCEVKYGSYCLWREENKEPMKDAKVKQM 183

Query: 183 KDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEA 242
           KDQLFVARAYYPSIAK+PSQ KLTR ++QNIQE ER+LSES+ D DLPP ++KK+Q+MEA
Sbjct: 184 KDQLFVARAYYPSIAKMPSQSKLTRDMKQNIQEFERILSESSQDADLPPQVDKKLQKMEA 243

Query: 243 AITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLT 302
            I KAKS PVDC+NVDKK RQILD+T DEA+FHMKQS FLYQLAVQTMPKSLHCLSMRLT
Sbjct: 244 VIAKAKSFPVDCNNVDKKLRQILDLTEDEASFHMKQSVFLYQLAVQTMPKSLHCLSMRLT 303

Query: 303 VEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLT 362
           VE+FKS S  +E   +++FSDPSL H+VI S N+LASSVVINSTV+ AR+SKN VFHVLT
Sbjct: 304 VEHFKSDS--LEDPISEKFSDPSLLHFVIISDNILASSVVINSTVVHARDSKNFVFHVLT 361

Query: 363 DGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVD-GP 421
           D QNYFAMK WF RN  K++TVQVLNIE+L L+  D    + + L  E+RVS  S D   
Sbjct: 362 DEQNYFAMKQWFIRNPCKQSTVQVLNIEKLELDDSD----MKLSLSAEFRVSFPSGDLLA 417

Query: 422 SIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQS 481
           S  ++  Y+S+FS  HYLLP++F  L KVV+LDDDVVVQ+DLS LWD++M GKVNGAV+S
Sbjct: 418 SQQNRTHYLSLFSQSHYLLPKLFDKLEKVVILDDDVVVQRDLSPLWDLDMEGKVNGAVKS 477

Query: 482 CSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKE 541
           C+V LGQL+S L   ++D N+C WMSGLN+VDLARWR L +++TYQ+  +E+S G+ES E
Sbjct: 478 CTVRLGQLRS-LKRGNFDTNACLWMSGLNVVDLARWRALGVSETYQKYYKEMSSGDESSE 536

Query: 542 AVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPR 601
           A+AL+ SLLTFQD VYALD  WALSGLG+DY +N +AIK AA+LHYNGNMKPWLELGIP 
Sbjct: 537 AIALQASLLTFQDQVYALDDKWALSGLGYDYYINAQAIKNAAILHYNGNMKPWLELGIPN 596

Query: 602 YKKFWKKFLNQEDQLLSECNVHP 624
           YK +W++ L++ED+ LS+CNV+P
Sbjct: 597 YKNYWRRHLSREDRFLSDCNVNP 619

May be involved in pectin biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp\|Q93ZX7\|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1	Back alignment and function description

>sp\|Q9LE59\|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1	Back alignment and function description

>sp\|Q0WQD2\|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2	Back alignment and function description

>sp\|Q8RXE1\|GAUT5_ARATH Probable galacturonosyltransferase 5 OS=Arabidopsis thaliana GN=GAUT5 PE=2 SV=1	Back alignment and function description

>sp\|Q9M9Y5\|GAUT6_ARATH Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1	Back alignment and function description

>sp\|Q949Q1\|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1	Back alignment and function description

>sp\|Q9ZPZ1\|GAUT2_ARATH Putative galacturonosyltransferase 2 OS=Arabidopsis thaliana GN=GAUT2 PE=5 SV=1	Back alignment and function description

>sp\|Q9LSG3\|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1	Back alignment and function description

>sp\|Q9SKT6\|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		624
449459576		612	PREDICTED: probable galacturonosyltransf	0.945	0.964	0.612	0.0
449511537		612	PREDICTED: probable galacturonosyltransf	0.945	0.964	0.612	0.0
224140665		620	glycosyltransferase, CAZy family GT8 [Po	0.953	0.959	0.631	0.0
224069020		590	glycosyltransferase [Populus trichocarpa	0.923	0.976	0.625	0.0
239056181		541	transferase, transferring glycosyl group	0.761	0.878	0.699	0.0
356532111		638	PREDICTED: probable galacturonosyltransf	0.950	0.929	0.584	0.0
296085804		568	unnamed protein product [Vitis vinifera]	0.876	0.963	0.591	0.0
356566836		617	PREDICTED: probable galacturonosyltransf	0.932	0.943	0.580	0.0
357506827		645	hypothetical protein MTR_7g074680 [Medic	0.969	0.937	0.567	0.0
297827451		617	GAUT7/LGT7 [Arabidopsis lyrata subsp. ly	0.940	0.951	0.607	0.0

>gi\|449459576\|ref\|XP_004147522.1\| PREDICTED: probable galacturonosyltransferase 7-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/612 (61%), Positives = 476/612 (77%), Gaps = 22/612 (3%)

Query: 18  GKRRWRSLVIGVLFLVILSMLVPLAFLLGLHNGFHSPNPNPNGYVPVHKTSIVNYRSTRI 77
            KRRWR LVIGVL LVILSMLVPL FLLGL+NGFH+      GY    + S   ++ + +
Sbjct: 18  AKRRWRGLVIGVLGLVILSMLVPLVFLLGLYNGFHTA-----GYASDPQNSKPGFQPSHV 72

Query: 78  NDLVKKLAPNISKDVRSNFPDGAKTETSDMSATDTSHHSKVTPVSPPAVPQSLP---NTS 134
           +D+++KL P + KDV   +    K ET D       H S+     PP    +LP   + +
Sbjct: 73  DDVIRKLGPTLPKDVFQKYAIEPKKETVDFI-----HESQEPKGLPPPKVDALPKHTHEN 127

Query: 135 NSKIAGTVADSGR-GGVDEN-ENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAY 192
           ++K+ G V  + R   VDE+ + CE KFGSYC+WR+EHRE +KD+MVKKLKDQLFVARAY
Sbjct: 128 STKVGGRVQPTDRMTAVDESGKPCEWKFGSYCIWRQEHREVIKDSMVKKLKDQLFVARAY 187

Query: 193 YPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPV 252
           YP+IAKLP+Q +LT+ ++QNIQE+ERVLSES TD+DLP  IEKK  +MEA I KAKS PV
Sbjct: 188 YPTIAKLPTQSQLTQEMKQNIQELERVLSESTTDLDLPLQIEKKSLKMEATIAKAKSFPV 247

Query: 253 DCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVV 312
           DC+NVDKK RQI DMT DEANFHMKQSAFL+QLAVQTMPKS+HCLSM+LTVEYF+  S  
Sbjct: 248 DCNNVDKKLRQIFDMTEDEANFHMKQSAFLFQLAVQTMPKSMHCLSMQLTVEYFRIYSTK 307

Query: 313 MELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKL 372
           +ELSQA+++SDP+L+HY+IFS N+LASSVVINSTV  ++ES+NQVFHVLTDGQNYFAM L
Sbjct: 308 LELSQAEKYSDPTLNHYIIFSNNILASSVVINSTVSNSKESRNQVFHVLTDGQNYFAMNL 367

Query: 373 WFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISV 432
           WF RN+++EA V+V+N+EQL L+ H+    +   LP E+R+S  ++     HS+ +YIS+
Sbjct: 368 WFLRNSYEEAAVEVINVEQLKLDDHENVTFV---LPQEFRISFRTL----THSRTEYISM 420

Query: 433 FSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSY 492
           FSHLHYLLPEIF++L KVVVL+DDV+VQ+DLSALW ++M GKVNGA Q C V LG+LKS 
Sbjct: 421 FSHLHYLLPEIFKNLDKVVVLEDDVIVQRDLSALWSLDMDGKVNGAAQCCHVRLGELKSI 480

Query: 493 LGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTF 552
           LGEN Y +N C WMSGLN++DLA+WRELDL++T++ LVRE++M   S +AVALR SLLTF
Sbjct: 481 LGENGYVQNDCTWMSGLNVIDLAKWRELDLSQTFRSLVRELTMQGGSTDAVALRASLLTF 540

Query: 553 QDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQ 612
           Q L+YALD  W+L GLGHDY LN++ ++ AA LHYNG +KPWLELGIP+YK +WKKFL++
Sbjct: 541 QSLIYALDDSWSLYGLGHDYKLNVQDVENAATLHYNGYLKPWLELGIPKYKAYWKKFLDR 600

Query: 613 EDQLLSECNVHP 624
           ED  LS+CN++P
Sbjct: 601 EDPFLSKCNINP 612

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449511537\|ref\|XP_004163983.1\| PREDICTED: probable galacturonosyltransferase 7-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224140665\|ref\|XP_002323701.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi\|222868331\|gb\|EEF05462.1\| glycosyltransferase, CAZy family GT8 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224069020\|ref\|XP_002326255.1\| glycosyltransferase [Populus trichocarpa] gi\|222833448\|gb\|EEE71925.1\| glycosyltransferase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|239056181\|emb\|CAQ58617.1\| transferase, transferring glycosyl groups / unknown protein [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356532111\|ref\|XP_003534617.1\| PREDICTED: probable galacturonosyltransferase 7-like [Glycine max]	Back alignment and taxonomy information

>gi\|296085804\|emb\|CBI31128.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356566836\|ref\|XP_003551632.1\| PREDICTED: probable galacturonosyltransferase 7-like [Glycine max]	Back alignment and taxonomy information

>gi\|357506827\|ref\|XP_003623702.1\| hypothetical protein MTR_7g074680 [Medicago truncatula] gi\|124360299\|gb\|ABN08312.1\| Glycosyl transferase, family 8 [Medicago truncatula] gi\|355498717\|gb\|AES79920.1\| hypothetical protein MTR_7g074680 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297827451\|ref\|XP_002881608.1\| GAUT7/LGT7 [Arabidopsis lyrata subsp. lyrata] gi\|297327447\|gb\|EFH57867.1\| GAUT7/LGT7 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		624
TAIR\|locus:2064163		619	GAUT7 "AT2G38650" [Arabidopsis	0.951	0.959	0.579	1.3e-180
TAIR\|locus:2160957		616	GAUT4 "galacturonosyltransfera	0.817	0.827	0.352	1e-84
TAIR\|locus:2098836		673	GAUT1 "galacturonosyltransfera	0.738	0.684	0.334	5.2e-81
TAIR\|locus:2121753		680	GAUT3 "galacturonosyltransfera	0.735	0.675	0.363	2.6e-79
TAIR\|locus:504955915		610	LGT5 "los glycosyltransferase	0.826	0.845	0.324	1.2e-75
TAIR\|locus:2039934		528	GAUT2 "galacturonosyltransfera	0.703	0.831	0.302	1.6e-61
TAIR\|locus:2027453		537	GAUT11 "galacturonosyltransfer	0.701	0.815	0.311	4e-58
TAIR\|locus:2051426		536	GAUT10 "galacturonosyltransfer	0.719	0.837	0.291	2.3e-55
TAIR\|locus:2074572		561	GAUT9 "galacturonosyltransfera	0.655	0.729	0.303	2.1e-52
TAIR\|locus:2090210		559	QUA1 "QUASIMODO 1" [Arabidopsi	0.727	0.812	0.297	1.7e-50

TAIR\|locus:2064163 GAUT7 "AT2G38650" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1753 (622.1 bits), Expect = 1.3e-180, P = 1.3e-180
 Identities = 359/619 (57%), Positives = 451/619 (72%)

Query:    18 GKRRWRSLVIGVLFLVILSMLVPLAFLLGLHNGFHSPN---PNP----NGYVPVHKTSIV 70
             GKRRW+ LVIGVL LVILSMLVPLAFLLGLHNGFHSP      P      +  ++ T   
Sbjct:    14 GKRRWKVLVIGVLVLVILSMLVPLAFLLGLHNGFHSPGFVTVQPASSFESFTRINATKHT 73

Query:    71 NYR-STRINDLVKKLAPNISKDVRSNFPDGAKTETSDMSATD-TSHHSKVTPVSPPAVPQ 128
                 S R++++++K+ P + K  +S+   G++    D++AT  T    +  PVSP  V  
Sbjct:    74 QRDVSERVDEVLQKINPVLPK--KSDINVGSR----DVNATSGTDSKKRGLPVSPTVVAN 127

Query:   129 SLP-NTSNSKIAGTVADSGRGGVDEN-ENCELKFGSYCLWRREHREEMKDTMVKKLKDQL 186
               P N + S+ + T         DE    CE+K+GSYCLWR E++E MKD  VK++KDQL
Sbjct:   128 PSPANKTKSEASYTGVQRKIVSGDETWRTCEVKYGSYCLWREENKEPMKDAKVKQMKDQL 187

Query:   187 FVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITK 246
             FVARAYYPSIAK+PSQ KLTR ++QNIQE ER+LSES+ D DLPP ++KK+Q+MEA I K
Sbjct:   188 FVARAYYPSIAKMPSQSKLTRDMKQNIQEFERILSESSQDADLPPQVDKKLQKMEAVIAK 247

Query:   247 AKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYF 306
             AKS PVDC+NVDKK RQILD+T DEA+FHMKQS FLYQLAVQTMPKSLHCLSMRLTVE+F
Sbjct:   248 AKSFPVDCNNVDKKLRQILDLTEDEASFHMKQSVFLYQLAVQTMPKSLHCLSMRLTVEHF 307

Query:   307 KSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQN 366
             KS S+   +S+  +FSDPSL H+VI S N+LASSVVINSTV+ AR+SKN VFHVLTD QN
Sbjct:   308 KSDSLEDPISE--KFSDPSLLHFVIISDNILASSVVINSTVVHARDSKNFVFHVLTDEQN 365

Query:   367 YFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDG-PSIHS 425
             YFAMK WF RN  K++TVQVLNIE+L L+  D    + + L  E+RVS  S D   S  +
Sbjct:   366 YFAMKQWFIRNPCKQSTVQVLNIEKLELDDSD----MKLSLSAEFRVSFPSGDLLASQQN 421

Query:   426 KMQYISVFSHLHYLLPEIFQSLTXXXXXXXXXXXXXXXSALWDINMGGKVNGAVQSCSVS 485
             +  Y+S+FS  HYLLP++F  L                S LWD++M GKVNGAV+SC+V 
Sbjct:   422 RTHYLSLFSQSHYLLPKLFDKLEKVVILDDDVVVQRDLSPLWDLDMEGKVNGAVKSCTVR 481

Query:   486 LGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVAL 545
             LGQL+S L   ++D N+C WMSGLN+VDLARWR L +++TYQ+  +E+S G+ES EA+AL
Sbjct:   482 LGQLRS-LKRGNFDTNACLWMSGLNVVDLARWRALGVSETYQKYYKEMSSGDESSEAIAL 540

Query:   546 RGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKF 605
             + SLLTFQD VYALD  WALSGLG+DY +N +AIK AA+LHYNGNMKPWLELGIP YK +
Sbjct:   541 QASLLTFQDQVYALDDKWALSGLGYDYYINAQAIKNAAILHYNGNMKPWLELGIPNYKNY 600

Query:   606 WKKFLNQEDQLLSECNVHP 624
             W++ L++ED+ LS+CNV+P
Sbjct:   601 WRRHLSREDRFLSDCNVNP 619

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS

GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR\|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504955915 LGT5 "los glycosyltransferase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZVI7	GAUT7_ARATH	2, ., 4, ., 1, ., -	0.6003	0.9423	0.9499	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		624
PLN02769		629	PLN02769, PLN02769, Probable galacturonosyltransfe	0.0
PLN02829		639	PLN02829, PLN02829, Probable galacturonosyltransfe	1e-126
PLN02910		657	PLN02910, PLN02910, polygalacturonate 4-alpha-gala	1e-118
PLN02718		603	PLN02718, PLN02718, Probable galacturonosyltransfe	1e-114
PLN02742		534	PLN02742, PLN02742, Probable galacturonosyltransfe	1e-100
cd06429		257	cd06429, GT8_like_1, GT8_like_1 represents a subfa	1e-95
PLN02523		559	PLN02523, PLN02523, galacturonosyltransferase	4e-79
PLN02870		533	PLN02870, PLN02870, Probable galacturonosyltransfe	2e-76
PLN02867		535	PLN02867, PLN02867, Probable galacturonosyltransfe	8e-67
PLN02659		534	PLN02659, PLN02659, Probable galacturonosyltransfe	6e-66
pfam01501		248	pfam01501, Glyco_transf_8, Glycosyl transferase fa	1e-35
cd00505		246	cd00505, Glyco_transf_8, Members of glycosyltransf	1e-16
cd04194		248	cd04194, GT8_A4GalT_like, A4GalT_like proteins cat	1e-14
COG1442		325	COG1442, RfaJ, Lipopolysaccharide biosynthesis pro	3e-12
cd06432		248	cd06432, GT8_HUGT1_C_like, The C-terminal domain o	7e-05

>gnl\|CDD\|215412 PLN02769, PLN02769, Probable galacturonosyltransferase	Back alignment and domain information

 Score =  976 bits (2526), Expect = 0.0
 Identities = 388/637 (60%), Positives = 460/637 (72%), Gaps = 28/637 (4%)

Query: 7   GGGGGAVLVTTGKRRWRSLVIGVLFLVILSMLVPLAFLLGL-HNGFHSPNPNPNGYV--- 62
           GG GG  L   GKRRWR LVI VL LV+ SMLVPLAFLLGL HNGFHS      G V   
Sbjct: 1   GGKGGHNLTPPGKRRWRGLVIAVLALVLCSMLVPLAFLLGLHHNGFHST-----GRVAVQ 55

Query: 63  PVHKTSIVNYRSTRINDLVKKLAPNISKDVRSNFPDGAKTETSDMSATDTS--------- 113
           PV      +  S R N   K    N   +        +   +S  S    S         
Sbjct: 56  PVSSPEFSHVGSARENGTKK--TQNQVSEGVDEILKESGLTSSKPSDIVISSRSKLKKVF 113

Query: 114 -----HHSKVTPVSPPAVPQSLPNTSNSKIAGTVADSGRGGVDENENCELKFGSYCLWRR 168
                +   V P S P       N S +              +  ++CEL+FGSYCLW  
Sbjct: 114 PDPKLNPLPVKPHSVPVPSSDTKNKSTAIDKENKGQ-KADEDENEKSCELEFGSYCLWSE 172

Query: 169 EHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVD 228
           EH+E MKD++VK+LKDQLFVARAYYPSIAKLP Q+KLTR L+QNIQE ERVLSES TD D
Sbjct: 173 EHKEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDAD 232

Query: 229 LPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQ 288
           LPP I+KK+++ME  I +AKS PVDC+NVD+K RQILDMT DEA+FHMKQSAFLYQL VQ
Sbjct: 233 LPPFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQ 292

Query: 289 TMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVL 348
           TMPKS HCLSMRLTVEYFKS S+ ME S +++FSDPSL HYVIFS NVLA+SVVINSTV+
Sbjct: 293 TMPKSHHCLSMRLTVEYFKSSSLDMEDSNSEKFSDPSLRHYVIFSKNVLAASVVINSTVV 352

Query: 349 CARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLP 408
            +RES N VFHVLTD QNY+AMK WF RN++KEA VQVLNIE L L+  DK  L  + LP
Sbjct: 353 HSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIEDLILKDLDKFALKQLSLP 412

Query: 409 VEYRVSLLSVDGPS-IHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALW 467
            E+RVS  SVD PS    + +Y+SVFSH H+LLPEIF+ L KVVVLDDDVVVQ+DLS LW
Sbjct: 413 EEFRVSFRSVDNPSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLW 472

Query: 468 DINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQ 527
           +++MGGKVNGAVQ C V LGQLK+YLG+ ++D NSCAWMSGLN++DL +WRELD+T+TY 
Sbjct: 473 NLDMGGKVNGAVQFCGVRLGQLKNYLGDTNFDTNSCAWMSGLNVIDLDKWRELDVTETYL 532

Query: 528 RLVREVSM-GEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLH 586
           +L+++ S  GEES  A AL  SLLTFQDL+Y LD  W LSGLGHDYG++ +AIKKAAVLH
Sbjct: 533 KLLQKFSKDGEESLRAAALPASLLTFQDLIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLH 592

Query: 587 YNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 623
           YNGNMKPWLELGIP+YKK+WK+FLN++D+ + ECNV+
Sbjct: 593 YNGNMKPWLELGIPKYKKYWKRFLNRDDRFMDECNVN 629

Length = 629

>gnl\|CDD\|215443 PLN02829, PLN02829, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|178320 PLN02718, PLN02718, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215395 PLN02742, PLN02742, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>gnl\|CDD\|215286 PLN02523, PLN02523, galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215468 PLN02870, PLN02870, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|178458 PLN02867, PLN02867, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|215356 PLN02659, PLN02659, Probable galacturonosyltransferase	Back alignment and domain information

>gnl\|CDD\|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8	Back alignment and domain information

>gnl\|CDD\|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>gnl\|CDD\|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>gnl\|CDD\|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|133054 cd06432, GT8_HUGT1_C_like, The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		624
PLN02769		629	Probable galacturonosyltransferase	100.0
PLN02910		657	polygalacturonate 4-alpha-galacturonosyltransferas	100.0
PLN02829		639	Probable galacturonosyltransferase	100.0
PLN02742		534	Probable galacturonosyltransferase	100.0
PLN02718		603	Probable galacturonosyltransferase	100.0
PLN02523		559	galacturonosyltransferase	100.0
PLN02870		533	Probable galacturonosyltransferase	100.0
PLN02867		535	Probable galacturonosyltransferase	100.0
PLN02659		534	Probable galacturonosyltransferase	100.0
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	100.0
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	100.0
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	100.0
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	100.0
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	100.0
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	100.0
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	100.0
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	99.98
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	99.97
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	99.93
PLN00176		333	galactinol synthase	99.9
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	99.74
KOG1879		1470	consensus UDP-glucose:glycoprotein glucosyltransfe	99.06
COG5597		368	Alpha-N-acetylglucosamine transferase [Cell envelo	97.44
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	95.5
PF11051		271	Mannosyl_trans3: Mannosyltransferase putative; Int	88.51
PLN03182		429	xyloglucan 6-xylosyltransferase; Provisional	84.73
PLN02867		535	Probable galacturonosyltransferase	81.83

>PLN02769 Probable galacturonosyltransferase	Back alignment and domain information

Probab=100.00  E-value=8.4e-163  Score=1337.76  Aligned_cols=601  Identities=63%  Similarity=0.995  Sum_probs=534.0

Q ss_pred             CccccCcccccchhhHHHHHHHHHHHHHHHHHHhcc-ccCCCCCCCCCCCCCccccccccCCchhhhhhhhhccCCCccc
Q 006959           12 AVLVTTGKRRWRSLVIGVLFLVILSMLVPLAFLLGL-HNGFHSPNPNPNGYVPVHKTSIVNYRSTRINDLVKKLAPNISK   90 (624)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (624)
                      ...++++||||||+++|||||||||||||||||||| |+||||+     +++.+|..+.|.|++....      .++.++
T Consensus         6 ~~~~~~~~~r~~~~~~~v~~lv~~s~l~pl~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~~   74 (629)
T PLN02769          6 HNLTPPGKRRWRGLVIAVLALVLCSMLVPLAFLLGLHHNGFHST-----GRVAVQPVSSPEFSHVGSA------RENGTK   74 (629)
T ss_pred             CCCCCCCcccccchHHHHHHHHHHHHHHHHHHHhccccccCCcc-----ccccccccccccccccccc------ccCCCc
Confidence            345678999999999999999999999999999999 9999998     6667888888887765322      222222


Q ss_pred             cccCC-----CCCCCCcccc-----cCCcCCCCcCCCCCCCCCC------CCCCC----CCCCCCcccccccccCCCCCC
Q 006959           91 DVRSN-----FPDGAKTETS-----DMSATDTSHHSKVTPVSPP------AVPQS----LPNTSNSKIAGTVADSGRGGV  150 (624)
Q Consensus        91 ~~~~~-----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~~  150 (624)
                      ++...     .......++.     +......+..+++.|.+++      ..+.+    ...+.++...+++..+...+|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (629)
T PLN02769         75 KTQNQVSEGVDEILKESGLTSSKPSDIVISSRSKLKKVFPDPKLNPLPVKPHSVPVPSSDTKNKSTAIDKENKGQKADED  154 (629)
T ss_pred             cccccccccccccccccCcccCCCcccccCCcccCCccCCCcccCCCCCCCCCCCCcccccccccccccccccccccccc
Confidence            22111     1111111111     1222222222233333222      11111    112445666788888889999


Q ss_pred             CCCccceeeccceeeeeccccccchhHHHHHhhhHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 006959          151 DENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLP  230 (624)
Q Consensus       151 ~~~~~~~~~~g~y~~w~~~~~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~~~~~~l~~~~~d~~l~  230 (624)
                      |++|+|||+||||||||+||+++|+|++||+|||||||||||||+|||+++|++|+|||++||||+||+||||++|+|||
T Consensus       155 e~~~~c~~~~g~y~~w~~e~~~~~~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~dlp  234 (629)
T PLN02769        155 ENEKSCELEFGSYCLWSEEHKEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDADLP  234 (629)
T ss_pred             cccccceeeccceeeecccccccCcHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHhhccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcCCCccccccccccHHHhcCcc
Q 006959          231 PGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPS  310 (624)
Q Consensus       231 ~~~~~~~~~m~~~~~~~k~~~~~~~~~~~kl~~~~~~~e~~~~~~~~q~~~l~~laa~~~PK~lhcL~mrLt~ey~~~~~  310 (624)
                      +++.++|++|+++|++||+++|||++|++||||||++||||+++|+||++||+||||+|+|||||||+||||+|||++++
T Consensus       235 ~~~~~~~~~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~~~~  314 (629)
T PLN02769        235 PFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSS  314 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccccCCCCCCceEEEEEeCCCcccccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEcc
Q 006959          311 VVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIE  390 (624)
Q Consensus       311 ~~~~~~~~~~l~D~~~iHIa~~sDNvLaasVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~  390 (624)
                      +++++|++++|+||+++|||+||||+||++|||||++.|+++|++++||||||.+|+.+|++||..|++++|+|||++++
T Consensus       315 ~~~~~~~~~~l~d~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e  394 (629)
T PLN02769        315 LDMEDSNSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIE  394 (629)
T ss_pred             hhccCCchhhccCCccceEEEEeccceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEEeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhHHHHhhccccchhhccccCCCCCccc-ccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcc
Q 006959          391 QLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHS-KMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDI  469 (624)
Q Consensus       391 ~f~~~n~~~~~l~~l~~~~ef~~~f~~~~~p~~~~-R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~i  469 (624)
                      +|+|.+.+...+++++.+++|+++|++...|..+. +++|+|+++|+|||||++||+++||||||+||||++||++||++
T Consensus       395 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~i  474 (629)
T PLN02769        395 DLILKDLDKFALKQLSLPEEFRVSFRSVDNPSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNL  474 (629)
T ss_pred             eeeecccchHHHHhhccchhhhhhhccCCCCchhccCcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcC
Confidence            99999999889999999999999888766665444 69999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeeeecccccchhhhhhhhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHccC-Ccccccccccccc
Q 006959          470 NMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSM-GEESKEAVALRGS  548 (624)
Q Consensus       470 DL~gkviaAVedc~~~~~~~~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~~-DQdlLN~gtLPp~  548 (624)
                      ||+|+++|||+||..+++.+.+|++..+|+++.||||+|||||||++||++++++++++|++++.. |+..|..++||++
T Consensus       475 DL~gkviAAVedc~~rl~~~~~yl~~~~F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~l  554 (629)
T PLN02769        475 DMGGKVNGAVQFCGVRLGQLKNYLGDTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLRAAALPAS  554 (629)
T ss_pred             CCCCCeEEEehhhhhhhhhhhhhhcccCCCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhhcccccccccCcCHH
Confidence            999999999999987777778888888899999999999999999999999999999999988765 6888889999999


Q ss_pred             cccccCceEEeCCcccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHHhhChhhhhcccCC
Q 006959          549 LLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH  623 (624)
Q Consensus       549 li~F~~~i~~Ld~~WN~~~lg~~~~~~~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~s~~fl~~cni~  623 (624)
                      +++|+|++++||++||++++||++.+..+.+++|+||||+|++|||++.++++|+++||+|++++++|||+||||
T Consensus       555 nlvF~g~v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~~KPW~e~~i~~yr~~W~kYl~~~~~fl~~Cni~  629 (629)
T PLN02769        555 LLTFQDLIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNMKPWLELGIPKYKKYWKRFLNRDDRFMDECNVN  629 (629)
T ss_pred             HHHhcCeEEECCHHHccccccccccccccccCCcEEEEECCCCCCccCCCCChHHHHHHHHhccCChHHhhCCCC
Confidence            999999999999999999999998887788899999999999999999999999999999999999999999997

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02742 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02718 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02523 galacturonosyltransferase	Back alignment and domain information

>PLN02870 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02867 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02659 Probable galacturonosyltransferase	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose	Back alignment and domain information

>PLN03182 xyloglucan 6-xylosyltransferase; Provisional	Back alignment and domain information

>PLN02867 Probable galacturonosyltransferase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		624
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	1e-40
3tzt_A		276	Glycosyl transferase family 8; structural genomics	1e-21
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311	Back alignment and structure

 Score =  149 bits (378), Expect = 1e-40
 Identities = 49/302 (16%), Positives = 94/302 (31%), Gaps = 53/302 (17%)

Query: 330 VIFSTN---VLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQV 386
           ++F+ +        V   S V  A       FHVL  G +                 ++ 
Sbjct: 3   IVFAADDNYAAYLCVAAKS-VEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRF 61

Query: 387 LNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQS 446
           +++   +                                 +++IS+ ++    L E    
Sbjct: 62  IDVNPEDFAG--------------------------FPLNIRHISITTYARLKLGEYIAD 95

Query: 447 LTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWM 506
             KV+ LD DV+V+  L+ LWD ++G    GA     V   + + Y  +         + 
Sbjct: 96  CDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVE--RQEGYKQKIGMADGEYYFN 153

Query: 507 SGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLL--TFQDLVYALDGVWA 564
           +G+ +++L +WR  D+ K     V      +           +L   F+  V   +  + 
Sbjct: 154 AGVLLINLKKWRRHDIFKMSSEWVE-----QYKDVMQYQDQDILNGLFKGGVCYANSRFN 208

Query: 565 LSGLGHDYGLN--------------IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFL 610
                + +  N                 +   AV HY G  KPW         + + +  
Sbjct: 209 FMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELA 268

Query: 611 NQ 612
             
Sbjct: 269 GS 270

PyMOL of 1g9r

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		624
3tzt_A		276	Glycosyl transferase family 8; structural genomics	100.0
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	100.0
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	99.92
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	99.89

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Probab=100.00  E-value=5.8e-46  Score=380.73  Aligned_cols=254  Identities=14%  Similarity=0.168  Sum_probs=187.4

Q ss_pred             CceEEEEE-eCCCcc-cccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHH
Q 006959          325 SLHHYVIF-STNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAIL  402 (624)
Q Consensus       325 ~~iHIa~~-sDNvLa-asVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~l  402 (624)
                      -.+|||++ ++||+. ++|+|+|++.|+++ ++++|||++++++.+..+.....-...+..++++.+++-.         
T Consensus         4 m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~---------   73 (276)
T 3tzt_A            4 MADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDL---------   73 (276)
T ss_dssp             -CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred             eeEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHH---------
Confidence            35899995 556775 67999999999986 6899999999999877655332211234677777764311         


Q ss_pred             HhhccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhc-ccCeEEEEecCeeeccCchHHHcccCCCCeeeeecc
Q 006959          403 IHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQS  481 (624)
Q Consensus       403 ~~l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP-~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVed  481 (624)
                                  +.  ..|.    .+++|..+|+||++|+++| +++||||||+|+||++||++||++|++|+.+|||+|
T Consensus        74 ------------~~--~~~~----~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d  135 (276)
T 3tzt_A           74 ------------FS--FAKV----TDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASH  135 (276)
T ss_dssp             ----------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC
T ss_pred             ------------Hh--cCcc----ccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEe
Confidence                        00  1121    2467899999999999999 699999999999999999999999999999999999


Q ss_pred             cccchhhhhhhhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHcc-----CCcccccccccccccccccCce
Q 006959          482 CSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS-----MGEESKEAVALRGSLLTFQDLV  556 (624)
Q Consensus       482 c~~~~~~~~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~-----~DQdlLN~gtLPp~li~F~~~i  556 (624)
                      |...  .+.++....+++...||||||||||||++||+.++++++++++++..     .|||++|        ++|.+++
T Consensus       136 ~~~~--~~~~~~~~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~LN--------~~f~~~~  205 (276)
T 3tzt_A          136 TGKT--DMANNVNRIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLLPDQDILN--------AMYGDRI  205 (276)
T ss_dssp             ----------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC--------CHHHH--------HHHGGGE
T ss_pred             cccc--hHHHHHHHhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccccCCChhHHH--------HHHhCCE
Confidence            9752  12222333455555699999999999999999999999999998754     2999998        6899999


Q ss_pred             EEeCC-cccccCCCCCC--------CCC-HhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHHhhChhhh
Q 006959          557 YALDG-VWALSGLGHDY--------GLN-IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLL  617 (624)
Q Consensus       557 ~~Ld~-~WN~~~lg~~~--------~~~-~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~s~~fl  617 (624)
                      ++||. +||+++ |+..        ... ....++|+||||+|..|||+..+.++|+++||+|++...++|
T Consensus       206 ~~Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~  275 (276)
T 3tzt_A          206 YPLDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL  275 (276)
T ss_dssp             EEEEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred             EECCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence            99999 999985 3321        111 235678999999999999999999999999999999998887

PyMOL of 3tzt

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		624
d1ga8a_		282	c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri	6e-27
d1ll2a_		263	c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun	6e-06

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score =  108 bits (271), Expect = 6e-27
 Identities = 51/310 (16%), Positives = 99/310 (31%), Gaps = 55/310 (17%)

Query: 330 VIFSTN---VLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQV 386
           ++F+ +        V   S V  A       FHVL                         
Sbjct: 3   IVFAADDNYAAYLCVAAKS-VEAAHPDTEIRFHVLDA----------------------- 38

Query: 387 LNIEQLNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHS---KMQYISVFSHLHYLLPEI 443
                  +   ++A +          +  + V+          +++IS+ ++    L E 
Sbjct: 39  ------GISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIRHISITTYARLKLGEY 92

Query: 444 FQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSC 503
                KV+ LD DV+V+  L+ LWD ++G    GA     V   + + Y  +        
Sbjct: 93  IADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVE--RQEGYKQKIGMADGEY 150

Query: 504 AWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGVW 563
            + +G+ +++L +WR  D+ K     V +     + ++   L      F+  V   +  +
Sbjct: 151 YFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDIL---NGLFKGGVCYANSRF 207

Query: 564 ALSGLGHDYGLN--------------IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKF 609
                 + +  N                 +   AV HY G  KPW         + + + 
Sbjct: 208 NFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTEL 267

Query: 610 LNQEDQLLSE 619
                 +  E
Sbjct: 268 AGSLTTVPEE 277

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		624
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	100.0
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	99.93
d1fo8a_		343	N-acetylglucosaminyltransferase I {Rabbit (Oryctol	85.93

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=6.5e-43  Score=352.28  Aligned_cols=251  Identities=19%  Similarity=0.244  Sum_probs=198.1

Q ss_pred             eEEEE-EeCCCcc-cccchhhcccccCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHHh
Q 006959          327 HHYVI-FSTNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIH  404 (624)
Q Consensus       327 iHIa~-~sDNvLa-asVvI~Sil~N~~~p~~ivFHIltD~in~~am~~wF~~n~~~~a~Ievini~~f~~~n~~~~~l~~  404 (624)
                      ||||+ +||||+. ++|+|+|++.|+++ ..++|||++++++.+..+.....-.-.+..+.++.++...+.         
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~---------   70 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFA---------   70 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGGT---------
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHhc---------
Confidence            69999 5667775 67999999998875 589999999999988876643322223567777776432110         


Q ss_pred             hccccchhhccccCCCCCcccccccchHHHHHHhhhhhhhcccCeEEEEecCeeeccCchHHHcccCCCCeeeeeccccc
Q 006959          405 MFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSV  484 (624)
Q Consensus       405 l~~~~ef~~~f~~~~~p~~~~R~~ylS~lny~Rf~IPeLlP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVedc~~  484 (624)
                                    ..+..   .+++|.++|+||++|++||+++||||||+|+||.+||++||++|++++.+|||.|+..
T Consensus        71 --------------~~~~~---~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~  133 (282)
T d1ga8a_          71 --------------GFPLN---IRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFV  133 (282)
T ss_dssp             --------------TSCCC---CTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHH
T ss_pred             --------------ccccc---ccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeeehhhhh
Confidence                          11111   3578899999999999999999999999999999999999999999999999999764


Q ss_pred             chhhhhhhhccCCCCCCCCccccceEEEechhHhhHhHHHHHHHHHHHcc-----CCcccccccccccccccccCceEEe
Q 006959          485 SLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS-----MGEESKEAVALRGSLLTFQDLVYAL  559 (624)
Q Consensus       485 ~~~~~~~yl~~~~f~~~~~yfNSGVlLiNL~kWR~~nitek~~~~l~~~~-----~DQdlLN~gtLPp~li~F~~~i~~L  559 (624)
                      ..  ...+....++.+..+||||||||||+++||+.++++++++++++..     .||+++|        ++|+|++..|
T Consensus       134 ~~--~~~~~~~~~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN--------~~f~~~~~~L  203 (282)
T d1ga8a_         134 ER--QEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILN--------GLFKGGVCYA  203 (282)
T ss_dssp             HT--STTHHHHTTCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSTHHHHHH--------HHHTTSEEEE
T ss_pred             hh--hhhhHHHhCCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccCcccCchhHHH--------HHhcCCEEeC
Confidence            21  1222234456677899999999999999999999999999998754     2999998        6899999999


Q ss_pred             CCcccccCCCCCCCC--------C------HhhhcCCeEEEccCCCCCcccCCcchhHHHHHHHHhhCh
Q 006959          560 DGVWALSGLGHDYGL--------N------IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQED  614 (624)
Q Consensus       560 d~~WN~~~lg~~~~~--------~------~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~s~  614 (624)
                      |.+||++..+|....        .      .+...+++||||+|+.|||+..+.+.+++.|++|+....
T Consensus       204 ~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~~~~~~~~~~~~~  272 (282)
T d1ga8a_         204 NSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLT  272 (282)
T ss_dssp             CGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTTTHHHHHHHTTCS
T ss_pred             CHHHeeccccccccccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChhHHHHHHHHHhhh
Confidence            999998754322110        0      124567999999999999999888999999999998743

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure