Citrus Sinensis ID: 006962

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620---
Protein Sequence
MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRSPRSPVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKKKNGNVLKKIGVLWKKPQK
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHcccccccccccccccccccccccccccHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccccccccccccccccccHHHHcccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mqtpkarsgsseaplkvspRAVRQLNTTALesksasssnqtcrtpkdkspkvidrrsprspvserkrpsrisELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEadtsnanrnlsqncsgdydlgQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKEtelqgiseenegLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKreldtpnmnsNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLstgnngkcmersgsidsnynpitgkiplpysddidddllkkkngnVLKKIGVLWKKPQK
Flexible Loop (DISEMBL)
mqtpkarsgsseaplkvspraVRQLNTTalesksasssnqtcrtpkdkspkvidrrsprspvserkrpsriselesqVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAEtklnegqiqsTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETelqniseeneMLKLEISKreldtpnmNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAasmlstgnngkcmersgSIDSNYNPITGKIPLPYSDDIDDDLLKKKngnvlkkigvlwkkpqk
Low Complexity Region (SEG)
MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRSPRSPVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDskkqllalssklqesqkqlqelsaseeARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMeskhleeelsslkseVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSddidddllkkkngnvlkkigvLWKKPQK
Disordered region (IsUnstruct)
***********************************************************************************************************************************************************************************************************************************************************LSVEAL******AIEAY*************INLLEGL*********************************************************************************************************************************************************************************************************************************************************************************************************ITGKIPLPYSDDIDDDLLKKKNGNVLKKIGVLW*****
Disordered Region (DISOPRED)
****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LWKK***
Disordered Region (DISEMBL)
****************VSPRAVRQLNTT***********************************************************************************QLLALSSK***********************************ELQAIQNQHSIDSAALASALNELQQLKAQFEM**************AHLELQSLKGNLIETISLMENMKN************QALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKKKNGNVLKKIGVLWKKPQK
Disordered Region (DISPRO)
********************************************************************S*ISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKKKNGNVLKKI**LWK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRSPRSPVSERKRPSRxxxxxxxxxxxxxxxxxxxxxLSSSESWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAAxxxxxxxxxxxxxxxxxxxxxEAAQTKNAESAHLExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGMKAIEAYSSIASExxxxxxxxxxxxxxxxxxxxxTSNANRNLSQNCSGDYDLGQKIKENQDTMExxxxxxxxxxxxxxxxxxxxxxxxxxxxLNEGQIQSTVKIKSAFEQLEQIKHQSGLRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNEGLHMQLDKNLMCQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTPNMNSNLAAEVEAARSAEKEALMKLGLLxxxxxxxxxxxxxxxxxxxxxxxxNCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKKKNGNVLKKIGVLWKKPQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	623	2.2.26 [Sep-21-2011]
Q9LSS5	564	Interactor of constitutiv	yes	no	0.898	0.992	0.502	1e-145
Q9ZQC5	583	Interactor of constitutiv	no	no	0.894	0.955	0.434	1e-112
Q8VYU8	396	Interactor of constitutiv	no	no	0.500	0.787	0.375	4e-34
Q8LE98	344	Interactor of constitutiv	no	no	0.443	0.802	0.301	2e-14
Q9M9F9	324	Interactor of constitutiv	no	no	0.271	0.521	0.370	4e-14
F4I8B9	1345	Putative WEB family prote	no	no	0.272	0.126	0.336	6e-13
F4JJP1	1221	WEB family protein At4g27	no	no	0.309	0.158	0.276	2e-07
Q9LFE4	853	WEB family protein At5g16	no	no	0.255	0.186	0.286	8e-06
Q9M8T5	806	WEB family protein At3g02	no	no	0.268	0.207	0.322	0.0007

>sp|Q9LSS5|ICR3_ARATH Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=2 SV=1

 Score =  516 bits (1329), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 315/627 (50%), Positives = 422/627 (67%), Gaps = 67/627 (10%)

Query: 1   MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQ-TCRTPKDKSPKVIDRRSPR 59
           MQT KAR+GS + P KVSPRA R L   ALE +S+SS    T RTPKDKSP V++RRSPR
Sbjct: 1   MQTQKARNGSPDVPKKVSPRAARPLKIAALEPESSSSPISATNRTPKDKSPNVLNRRSPR 60

Query: 60  SPVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSK 119
           SPVSE+KRPSRI+ELE  VS+LQE+LKKAK+Q+S SE+ K+QA+Q+AE+S+KQL  +SSK
Sbjct: 61  SPVSEKKRPSRITELELLVSQLQEELKKAKDQISVSETSKKQAEQEAEESRKQLQEVSSK 120

Query: 120 LQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQ 179
           L+ESQ Q  E SA EE        V Q   Q C  E  A   +     A LA+  +E++Q
Sbjct: 121 LEESQNQFVETSALEEETDKTGSLVFQSVSQECDWEFSATAGER----AGLAAVAHEIRQ 176

Query: 180 LKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQAL 239
           LK Q EMVA SEA   K AE  + E+Q L+GNL++T+  +EN +NQL++ + SE + +AL
Sbjct: 177 LKLQIEMVASSEAGHVKQAELYNSEVQLLRGNLMDTLFHVENFRNQLKDCEISEAETEAL 236

Query: 240 ARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNA 299
           A ETL QLE AK +VE L+++G KA+E+Y  +A ELE+S++R+  LE LV+KL       
Sbjct: 237 ATETLRQLENAKKAVEELKSDGTKAVESYKKMAVELEQSKSRMVWLEALVNKL------- 289

Query: 300 NRNLSQNCSGDYDLGQKIKENQDTM---ESKHLEEELSSLKSEVGQLRSALEIAETKLNE 356
                QN   D +  + + ++ +++   ES  ++EE+SSL+ EV +LR+ALE ++ K  E
Sbjct: 290 -----QNNPADLENHEILLKDYESLRRGESNEMDEEVSSLRCEVERLRAALEASDKKDQE 344

Query: 357 GQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISE 416
           G ++++ +++                + EL++EL+ AKS+I+ELKA LMDKETELQ ISE
Sbjct: 345 GNVEASSRLRI---------------QAELQSELKIAKSEIDELKARLMDKETELQFISE 389

Query: 417 ENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEI 476
           E +   M+L KN   Q+E  +  +L+KL +A+E+LKA+LMDKETELQ +S+ENE LK +I
Sbjct: 390 ERDNFSMKLMKN---QKEIDVEAELKKLREAIENLKADLMDKETELQIVSDENETLKSDI 446

Query: 477 SKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSAN 536
            K E D                   ++A +KLG+ MEEADKS+++A R+ EQLEA Q++N
Sbjct: 447 HKSETDV------------------QDAFLKLGIAMEEADKSSKKAVRVTEQLEATQASN 488

Query: 537 CEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSD 596
            E E ELR+LKVQS+QWRKAAEAA +MLS GNNGK  E       NYN        PYS+
Sbjct: 489 SEMETELRKLKVQSNQWRKAAEAATAMLSAGNNGKFAE-------NYNQTNS----PYSE 537

Query: 597 DIDDDLLKKKNGNVLKKIGVLWKKPQK 623
           DIDD+L KKKNGNVLKKIGVLWKKPQK
Sbjct: 538 DIDDELTKKKNGNVLKKIGVLWKKPQK 564

Acts as a scaffold, mediating interaction of ROPs with different proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQC5|ICR2_ARATH Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1

 Score =  407 bits (1047), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 282/649 (43%), Positives = 407/649 (62%), Gaps = 92/649 (14%)

Query: 1   MQTPKARSGSSEAPLKVSP----RAVRQLNTTALESKSASSSNQTCRTPKDKSPKVI-DR 55
           MQTPK R GS E P K SP    +  R+L T+  ES   SS N   RTPK +SPKV+ DR
Sbjct: 1   MQTPKPRPGSLEVPQKKSPASTPKTARKLKTS--ESDPVSSPNTKIRTPKTQSPKVVADR 58

Query: 56  RSPRSPVSE--RKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQL 113
           RSPR+PV+E  +KR  +  EL SQ+S+LQE+LKKAK QLS+SE+ K++AQ  AE++K+QL
Sbjct: 59  RSPRTPVNEIQKKRTGKTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQL 118

Query: 114 LALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASA 173
           +              E++ASE++R  EL+K+SQE D++ QSEL+A+Q QH++DSAAL+S 
Sbjct: 119 M--------------EINASEDSRIDELRKLSQERDKAWQSELEAMQRQHAMDSAALSST 164

Query: 174 LNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESE 233
           +NE+Q+LKAQ         ++++N E+  +EL        ET+SL+E ++ +L ++KE E
Sbjct: 165 MNEVQKLKAQL--------SESENVENLRMELN-------ETLSLVEKLRGELFDAKEGE 209

Query: 234 TQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE 293
            QA  +   T  QLE A L++E LR++GMK  EA +S+ +ELE+S++ +  LE LV +LE
Sbjct: 210 AQAHEIVSGTEKQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLE 269

Query: 294 A-DTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAET 352
             D +  N N                   D+   + L+EE++  + E+ QL+SA+E+ E 
Sbjct: 270 EEDEARGNAN------------------GDSSSVEELKEEINVARQEISQLKSAVEVTER 311

Query: 353 KLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQ 412
           + +E  IQST++I++A+EQ++++K     RE EL  EL+K K++ + L   LMDKE +L+
Sbjct: 312 RYHEEYIQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLR 371

Query: 413 GISEENEGLHMQLDK---------NLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 463
            + +ENE L+ ++ +         N + Q E +   +L+KL   V +L+ANLMDKE ELQ
Sbjct: 372 ILVDENEILNSKIKEKEEVYLNLENSLNQNEPEDTGELKKLESDVMELRANLMDKEMELQ 431

Query: 464 NISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAA 523
           ++  + E L+      E++T     N A +         EAL KLG L EEADKS +RA 
Sbjct: 432 SVMSQYESLR-----SEMETMQSEKNKAID---------EALAKLGSLTEEADKSGKRAE 477

Query: 524 RMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASML-----STGNNGKCMERSGS 578
              EQL AAQ  N E EAELRRLKVQ DQWRKAAEAAA+ML     +  +NGK +ER+GS
Sbjct: 478 NATEQLGAAQVTNTELEAELRRLKVQCDQWRKAAEAAATMLSGGNNNNNSNGKYVERTGS 537

Query: 579 IDSNYNPITGK-IPL-PYSDDIDDDL--LKKKNGNVLKKIGVLWKKPQK 623
           ++S   P+  + + + PY  + DD+L   KKKNG++LKKIGVL KK QK
Sbjct: 538 LES---PLRRRNVNMSPYMGETDDELSSPKKKNGSMLKKIGVLLKKSQK 583

Acts as a scaffold, mediating interaction of ROPs with different proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYU8|ICR5_ARATH Interactor of constitutive active ROPs 5 OS=Arabidopsis thaliana GN=ICR5 PE=2 SV=2

 Score =  146 bits (369), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 214/368 (58%), Gaps = 56/368 (15%)

Query: 1   MQTPKARSGSSEAPLKVSP----RAVRQLNTTALESKSASSSNQTCRTPKDKSPKVI-DR 55
           MQTPK+R GS E P K SP    + VR+L  +      A S  +T    K + PKV+ DR
Sbjct: 1   MQTPKSRPGSLELPQKKSPLPAPKVVRRLKPSG-----AESDPKTKTISKTQIPKVVADR 55

Query: 56  RSPRSPVSE--RKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQL 113
           RS R P++E  +KR  RI ELES +S+LQE+LKKAK +L+ SE+ K++AQ++AED+K QL
Sbjct: 56  RSARIPLNEIQKKRTGRIPELESTISQLQEELKKAKEELNRSEALKREAQEEAEDAKHQL 115

Query: 114 LALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASA 173
           +              +++ASE++R  EL+K+SQE D++ QSEL+A+Q QH +DS AL+SA
Sbjct: 116 M--------------DINASEDSRIEELRKLSQERDKTWQSELEAMQRQHGMDSTALSSA 161

Query: 174 LNELQQLKAQ-FEMVAESEAAQTK----NAESAHLELQSLKGNLIETISLMENMKNQLRE 228
           +NE+Q+LK++ FE  +ESE  Q+K    + E    +L+  + N  ++ S ME     + E
Sbjct: 162 INEVQKLKSKLFE--SESELEQSKYEVRSLEKLVRQLEEERVNSRDSSSSME-----VEE 214

Query: 229 SKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGL 288
            KE    A  L+R+ + QL++A  + E    E  + I++   I S  E++      ++  
Sbjct: 215 LKE----AMNLSRQEITQLKSAVEAAETRYQE--EYIQSTLQIRSAYEQTEA----VKSR 264

Query: 289 VSKLEAD-TSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKS-------EV 340
            S+ EA+ T   NR   +      +L +K+KE++ T + K LE +L  ++        E+
Sbjct: 265 YSQREAELTEELNRTKDEIEGLRKELMEKVKEDESTGDLKKLESDLMEVRGSLMDKEMEL 324

Query: 341 GQLRSALE 348
             LRSA+E
Sbjct: 325 QILRSAME 332

Acts as a scaffold, mediating interaction of ROPs with different proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LE98|ICR1_ARATH Interactor of constitutive active ROPs 1 OS=Arabidopsis thaliana GN=ICR1 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 162/312 (51%), Gaps = 36/312 (11%)

Query: 320 NQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQS 379
           N D +  K L   +S L+S++GQ +  L + + +L   +    VK ++  E  ++ K  +
Sbjct: 54  NSDPLGQKKLGGRISDLESQLGQAQEELRLLKEQLANAE---AVKKQAQDELHKKSKKPN 110

Query: 380 GLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNN 439
            L  VE E+  +  + D +E+  ++  KET++           + ++K  + + E +  N
Sbjct: 111 PLARVE-ESATEAERIDRDEIPGDVQ-KETDV---------FEVPVEKIAVEEEELRSGN 159

Query: 440 DLRKLAQAVED----LKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVE 495
           D  +   A ED    LKA L D E E +++ +ENE LK           N  S+ A+E+ 
Sbjct: 160 DEAEKLVAKEDEIKMLKARLYDMEKEHESLGKENESLK-----------NQLSDSASEIS 208

Query: 496 AARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRK 555
             ++ E E + K+  + EE ++S  + A + E+LE+ + A    EAE+++L+VQ++QWRK
Sbjct: 209 NVKANEDEMVSKVSRIGEELEESRAKTAHLKEKLESMEEAKDALEAEMKKLRVQTEQWRK 268

Query: 556 AAEAAASMLSTGNNGKCMERSGSIDSNY-----NPITGKI-PLPYSDDIDDDLL-KKKNG 608
           AA+AAA++LS        +RSGS +  Y     +P  G + P   +DD DD L   K+  
Sbjct: 269 AADAAAAVLSGEFEMNGRDRSGSTEKYYAGGFFDPSAGFMDPPGMADDYDDGLGSGKRKS 328

Query: 609 NVLKKIGVLWKK 620
           + +K  G LW+K
Sbjct: 329 SGMKMFGELWRK 340

Acts as a scaffold, mediating interaction of ROPs with different proteins. Required for primary and adventitious root maintenance, but not for their formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9F9|ICR4_ARATH Interactor of constitutive active ROPs 4 OS=Arabidopsis thaliana GN=ICR4 PE=3 SV=2

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 107/186 (57%), Gaps = 17/186 (9%)

Query: 438 NNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAA 497
           N++L      +  LKA L D E E  ++SEENE LK ++ K   DT         E+  A
Sbjct: 149 NDELASKEDQINVLKARLYDLEKERVSLSEENETLKDQLKK--TDT---------EMSCA 197

Query: 498 RSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAA 557
           ++ E E   K+  + EE ++SN   A++ ++LE+ + A    EAE+++LKVQ++QWRKAA
Sbjct: 198 KAKEDEIASKVSQIGEELEESNETTAKLKKKLESVEEAKETLEAEMKKLKVQTEQWRKAA 257

Query: 558 EAAASMLSTG--NNGKCMERSGSIDSNY-NPITGKIPLPYSDDIDDDLLKKKNGNVLKKI 614
           +AAA++LS G   NG+  E+ GS++ ++     G   +  +DD DD   K+K+    K  
Sbjct: 258 DAAAAVLSGGVEMNGRFSEQCGSMEKHFAGRFVGSPGM--ADDSDDGSGKRKSSGK-KMF 314

Query: 615 GVLWKK 620
           G LWKK
Sbjct: 315 GDLWKK 320

Acts as a scaffold, mediating interaction of ROPs with different proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|F4I8B9|Y1501_ARATH Putative WEB family protein At1g65010, chloroplastic OS=Arabidopsis thaliana GN=At1g65010 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 108/190 (56%), Gaps = 20/190 (10%)

Query: 32  SKSASSSNQTCRTPK-----DKSPKVI------DRRSPRSPVSER--KRPSRISELESQV 78
           S S S SN     P      D+SP  +      DRR  R P  E+   R  + +EL++Q+
Sbjct: 28  SASKSDSNSASPVPNTRLSLDRSPPTVNSKPTPDRRPSRIPTPEKVHSRLVKGTELQTQL 87

Query: 79  SRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQES---QKQLQELSASEE 135
           +++QEDLKKA  Q+   +  K +A  D ++S+K +   + KL+E+   QK+ +E    E+
Sbjct: 88  NQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEK 147

Query: 136 ARAVELQKVS----QETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESE 191
            RAVEL++      Q+ D + ++EL++I++QH++D +AL S   ELQ++K +  M A+++
Sbjct: 148 FRAVELEQAGLEAVQKKDVTSKNELESIRSQHALDISALLSTTEELQRVKHELSMTADAK 207

Query: 192 AAQTKNAESA 201
                +AE A
Sbjct: 208 NKALSHAEEA 217

Arabidopsis thaliana (taxid: 3702)

>sp|F4JJP1|Y4759_ARATH WEB family protein At4g27595, chloroplastic OS=Arabidopsis thaliana GN=At4g27595 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 35/228 (15%)

Query: 1   MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVI------D 54
           M+TP+++      P   +PR  +   T +    ++ S  Q+ R   D+SP+ +      D
Sbjct: 10  METPRSK------PSPPTPRVSKPTVTKS--DGNSPSPVQSTRLSIDRSPQTVNSKPVSD 61

Query: 55  RRSPRSP-------------VSERKRPSRISELESQ-VSRLQEDLKKAKNQLSSSESWKQ 100
           RR+ R P             ++ +K  SR+ +     V + QEDL+KA  Q+   +  K 
Sbjct: 62  RRTARVPTPPEANYFLIIICMAFQKSQSRLGKGTGLLVQQTQEDLRKANEQIERLKKDKA 121

Query: 101 QAQQDAEDSKKQLLALSSKLQE---SQKQLQELSASEEARAVELQKVSQET----DQSCQ 153
           +A  D ++S+K     + KL+E   +Q   ++ S  E+ RAVEL++   E     + S +
Sbjct: 122 KALDDLKESEKLTKEANEKLREALAAQHHAEKSSEIEKFRAVELEQAGIEAVHKKEVSWK 181

Query: 154 SELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESA 201
            E+++I++QH++D +AL S   EL ++K +  M A+++     +AE A
Sbjct: 182 KEVESIRSQHALDISALLSTTEELHRIKQELAMTADAKNKALSHAEEA 229

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFE4|Y5673_ARATH WEB family protein At5g16730, chloroplastic OS=Arabidopsis thaliana GN=At5g16730 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 108/185 (58%), Gaps = 26/185 (14%)

Query: 18  SPRAVRQLNTTALESKSASSSNQTCRTPKDK------SPKV---IDRRSPRSPVSERKRP 68
           +PR  ++   T  +S+++++++ +  TP  +      SP     ++RRSP+ P    K  
Sbjct: 26  TPRIAKR---TVNKSETSNNNSPSTTTPHSRLSLDRSSPNSKSSVERRSPKLPTPPEKSQ 82

Query: 69  SRISELE--------SQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKL 120
           +R++ ++        +++S+++EDLKKA  ++SS E  K +A  + + +KK+   ++ KL
Sbjct: 83  ARVAAVKGTESPQTTTRLSQIKEDLKKANERISSLEKDKAKALDELKQAKKEAEQVTLKL 142

Query: 121 QE---SQKQLQELSASEEARAVE--LQKVSQETDQSCQSELQAIQNQHSIDSAALASALN 175
            +   +QK ++E S  E+ +AVE  ++ V Q  ++  + EL+ ++NQH+ DSAAL +   
Sbjct: 143 DDALKAQKHVEENSEIEKFQAVEAGIEAV-QNNEEELKKELETVKNQHASDSAALVAVRQ 201

Query: 176 ELQQL 180
           EL+++
Sbjct: 202 ELEKI 206

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M8T5|Y3293_ARATH WEB family protein At3g02930, chloroplastic OS=Arabidopsis thaliana GN=At3g02930 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 16/183 (8%)

Query: 10  SSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRT----PKDKSPKVIDRRSPRSPVSER 65
           SS   L+V PR  R +  T  +S S S + Q  R     P   S    D+RSP++P    
Sbjct: 17  SSSTSLRV-PRLTRIV--TKPDSNSPSPTQQQSRLSFERPSSNSKPSTDKRSPKAPTPPE 73

Query: 66  K---RPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQ- 121
           K   R  R+SE + Q  +++EDLKKA   ++S E+ K +A    ++++K+    S KL  
Sbjct: 74  KTQIRAVRVSESQPQSVQIKEDLKKANELIASLENEKAKALDQLKEARKEAEEASEKLDE 133

Query: 122 --ESQKQLQELSASEEARAVE--LQKVSQETDQSCQSELQAIQNQHSIDSAALASALNEL 177
             E+QK+  E    E+   VE  ++ V Q  ++  + EL+ ++NQH+ +SA L     EL
Sbjct: 134 ALEAQKKSLENFEIEKFEVVEAGIEAV-QRKEEELKKELENVKNQHASESATLLLVTQEL 192

Query: 178 QQL 180
           + +
Sbjct: 193 ENV 195

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	623
255582963	618	ATP binding protein, putative [Ricinus c	0.990	0.998	0.693	0.0
359478681	624	PREDICTED: interactor of constitutive ac	0.998	0.996	0.668	0.0
147826788	657	hypothetical protein VITISV_024243 [Viti	0.990	0.939	0.665	0.0
356539100	615	PREDICTED: interactor of constitutive ac	0.980	0.993	0.591	0.0
255568412	627	ATP binding protein, putative [Ricinus c	0.985	0.979	0.592	0.0
224140161	609	predicted protein [Populus trichocarpa]	0.974	0.996	0.590	0.0
449459076	614	PREDICTED: interactor of constitutive ac	0.982	0.996	0.598	0.0
356542561	615	PREDICTED: interactor of constitutive ac	0.980	0.993	0.596	0.0
225439892	621	PREDICTED: interactor of constitutive ac	0.991	0.995	0.586	0.0
449511468	614	PREDICTED: LOW QUALITY PROTEIN: interact	0.982	0.996	0.588	0.0

>gi|255582963|ref|XP_002532251.1| ATP binding protein, putative [Ricinus communis] gi|223528039|gb|EEF30117.1| ATP binding protein, putative [Ricinus communis]

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/624 (69%), Positives = 530/624 (84%), Gaps = 7/624 (1%)

Query: 1   MQTPKA-RSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRSPR 59
           MQTPK  RSGSSEA  KV PRAVRQL TT LE  SASSSNQT RTPKD+SPKV+DRRSPR
Sbjct: 1   MQTPKGSRSGSSEALQKVRPRAVRQLKTTGLEFDSASSSNQT-RTPKDRSPKVVDRRSPR 59

Query: 60  SPVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSK 119
           SPV+E+KRPSRISELESQVS LQE+LK+AK+QLS SESWK++A +DAE+SKK+LLA+SSK
Sbjct: 60  SPVTEKKRPSRISELESQVSHLQEELKRAKDQLSLSESWKKEAVEDAEESKKKLLAISSK 119

Query: 120 LQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQ 179
           L+ESQKQL E SASEEAR ++LQKV+QE DQ+ QSEL+A + QH +DSAALASAL+E+QQ
Sbjct: 120 LEESQKQLLEFSASEEARVIDLQKVTQEQDQAWQSELEATKQQHPVDSAALASALSEIQQ 179

Query: 180 LKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQAL 239
           LK Q EMVAES AAQ K+ ESA +ELQ+L+ NL++T+SL+EN+KNQL+++K+SE QAQAL
Sbjct: 180 LKLQLEMVAESGAAQNKHTESADVELQTLRANLMDTLSLVENVKNQLQDTKDSEAQAQAL 239

Query: 240 ARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNA 299
           A ETLLQLETAK SVEALR++G KAIEAY+SIASEL++SR R+ LLEGLV KLEAD  NA
Sbjct: 240 ASETLLQLETAKKSVEALRSDGSKAIEAYNSIASELDQSRARVKLLEGLVLKLEADLHNA 299

Query: 300 NRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 359
           N ++  + +  ++  + I ENQ + E+  LE E+SSLKSEVGQLRS+L+ AETK  E Q 
Sbjct: 300 NGSIFLDSANVHE--EAIVENQRSQEANQLEAEVSSLKSEVGQLRSSLQAAETKSQEEQN 357

Query: 360 QSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENE 419
            ST +IKSA+E +EQIK +S L+E ELEAEL++ K+DIEELKA+LMDKETELQGISEENE
Sbjct: 358 NSTAQIKSAYELVEQIKTESLLKESELEAELKQTKADIEELKADLMDKETELQGISEENE 417

Query: 420 GLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKR 479
            L+M+L   L C+ ES+L N++RKL + V DLKA+LMDKETELQNI E+NE+LK+EISKR
Sbjct: 418 VLNMKLKNILSCRGESELENEIRKLKENVADLKASLMDKETELQNILEQNEILKVEISKR 477

Query: 480 ELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEA 539
           E++  N    +  E+E AR+AE+EALMKLG +MEEAD+SN++ AR+ EQLEA+Q+AN E 
Sbjct: 478 EMNGTN---EMDVELEVARAAEREALMKLGFMMEEADRSNKKVARVTEQLEASQAANSEM 534

Query: 540 EAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDID 599
           EAELRRLKVQSDQWRKAAEAAA+MLS GNNG+ MER+GS+DS+YNP TG+I  PY++D+D
Sbjct: 535 EAELRRLKVQSDQWRKAAEAAAAMLSAGNNGRFMERTGSLDSSYNPATGRIGSPYNEDMD 594

Query: 600 DDLLKKKNGNVLKKIGVLWKKPQK 623
           DDLLKKKNGN+LKKIGVLWKKPQK
Sbjct: 595 DDLLKKKNGNMLKKIGVLWKKPQK 618

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478681|ref|XP_002282027.2| PREDICTED: interactor of constitutive active ROPs 3-like [Vitis vinifera]

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/625 (66%), Positives = 515/625 (82%), Gaps = 3/625 (0%)

Query: 1   MQTPKA-RSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRSPR 59
           MQTPKA +S  S AP K+SPR VRQL TT+LES SASSSNQ  RTPKDKSPKVI+RRSPR
Sbjct: 1   MQTPKASKSSPSGAPQKISPRTVRQLKTTSLESDSASSSNQASRTPKDKSPKVIERRSPR 60

Query: 60  SPVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSK 119
           SPVSE+KRP++++ELESQ+S+LQEDLKKAK+QLSSSESWK+ AQQDAE+SKKQL A+SSK
Sbjct: 61  SPVSEKKRPNKVTELESQISKLQEDLKKAKDQLSSSESWKRSAQQDAEESKKQLSAMSSK 120

Query: 120 LQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQ 179
           L+ESQ+QL ELSASEE R +ELQK+SQE D++ +SEL+A++ QHS+DSAALASA++E+Q+
Sbjct: 121 LEESQRQLLELSASEEDRVIELQKISQERDRAWESELRAVEKQHSVDSAALASAMSEIQR 180

Query: 180 LKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQAL 239
           LK+Q EM  ES+ AQTK+ ESA  EL SLK NL ET+SL+ENMKNQL++SKESE QAQAL
Sbjct: 181 LKSQLEMKVESQVAQTKHTESADSELHSLKENLAETLSLVENMKNQLKDSKESEAQAQAL 240

Query: 240 ARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNA 299
           A ETLLQLETAK ++EALR +G+KA E Y+SI+ EL  SR R+N LEGLVSKL+ D + A
Sbjct: 241 ASETLLQLETAKSTIEALRTDGIKAAETYNSISLELNESRARVNFLEGLVSKLKTDLTEA 300

Query: 300 NRNLSQNCSGDYDLG-QKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQ 358
            R+ S N +G+ +L  Q+  E+++  ES  L+ EL+SLK EVGQL+SAL+ AE + +E  
Sbjct: 301 -RSSSPNYAGNDNLDEQQASEHEEIEESNQLKAELASLKIEVGQLKSALDAAEIRYHEEH 359

Query: 359 IQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEEN 418
           +QSTV+I+SA+E +E +K  S  R+ EL+ EL+K K+DIEELKANLMDKETELQGISEEN
Sbjct: 360 VQSTVQIRSAYEHVEHVKSASSSRQAELQVELEKTKADIEELKANLMDKETELQGISEEN 419

Query: 419 EGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 478
           EGL M+L  NL CQRE +L  +L+K  + V  LK NLMDKETE Q + +ENE LKLE+ K
Sbjct: 420 EGLMMKLQSNLSCQREYELERELKKSKEDVAKLKENLMDKETEFQYVVDENETLKLEMKK 479

Query: 479 RELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCE 538
           RE+D       +A+E+EAAR+AE+EAL+KLG +MEEADKS+RRAAR+AEQLEA Q AN E
Sbjct: 480 REMDKGKFGDGIASEIEAARAAEQEALLKLGYVMEEADKSSRRAARVAEQLEATQVANSE 539

Query: 539 AEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDI 598
            EAELR+LKVQSDQWRKAAEAAA+MLS G+NGK  E++GS+DSNYN ITGKI  PYS+D+
Sbjct: 540 MEAELRKLKVQSDQWRKAAEAAAAMLSAGSNGKLTEKTGSLDSNYNHITGKITSPYSEDL 599

Query: 599 DDDLLKKKNGNVLKKIGVLWKKPQK 623
           DD+  KKKNGNVLKKIGVLWKKP K
Sbjct: 600 DDESPKKKNGNVLKKIGVLWKKPHK 624

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826788|emb|CAN75085.1| hypothetical protein VITISV_024243 [Vitis vinifera]

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/621 (66%), Positives = 510/621 (82%), Gaps = 4/621 (0%)

Query: 6   ARSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRSPRSPVSE- 64
           ++S  S AP K+SPR VRQL TT+LES SASSSNQ  RTPKDKSPKVI+RRSPRSPVSE 
Sbjct: 38  SKSSPSGAPQKISPRTVRQLKTTSLESDSASSSNQASRTPKDKSPKVIERRSPRSPVSEL 97

Query: 65  -RKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQES 123
            +KRP+R++ELESQ+S+LQEDLKKAK+QLSSSESWK+ AQQDAE+SKKQL A+SSKL+ES
Sbjct: 98  QKKRPNRVTELESQISKLQEDLKKAKDQLSSSESWKRSAQQDAEESKKQLSAMSSKLEES 157

Query: 124 QKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQ 183
           Q+QL ELSASEE R +ELQK+SQE D++ +SEL+A++ QHS+DSAALASA++E+Q+LK+Q
Sbjct: 158 QRQLLELSASEEDRVIELQKISQERDRAWESELRAVEKQHSVDSAALASAMSEIQRLKSQ 217

Query: 184 FEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARET 243
            EM  ES+ AQTK+ ESA  EL SLK NL ET+SL+ENMKNQL++SKESE QAQALA ET
Sbjct: 218 LEMKVESQVAQTKHTESADSELHSLKENLAETLSLVENMKNQLKDSKESEAQAQALASET 277

Query: 244 LLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL 303
           LLQLETAK ++EALR +G+KA E Y+SI+ EL  SR R+N LEGLVSKL+ D + A R+ 
Sbjct: 278 LLQLETAKSTIEALRTDGIKAAETYNSISLELNESRARVNFLEGLVSKLKTDLTEA-RSS 336

Query: 304 SQNCSGDYDLG-QKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST 362
           S N +G+ +L  Q+  E+++  ES  L+ EL+SLK EVGQL+SAL+ AE + +E  +QST
Sbjct: 337 SPNYAGNDNLDEQQASEHEEIEESNQLKAELASLKIEVGQLKSALDAAEIRYHEEHVQST 396

Query: 363 VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLH 422
           V+I+SA+E +E +K  S  R+ EL+ EL+K K+DIEELKANLMDKETELQGISEENEGL 
Sbjct: 397 VQIRSAYEHVEHVKSASSSRQAELQVELEKTKADIEELKANLMDKETELQGISEENEGLM 456

Query: 423 MQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELD 482
           M+L  NL CQRE +L  +L+K  + V  LK NLMDKETE Q + +ENE LKLE+ KRE+D
Sbjct: 457 MKLQSNLSCQREYELERELKKSKEDVAKLKENLMDKETEFQYVVDENETLKLEMKKREMD 516

Query: 483 TPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAE 542
                  +A+E+EAAR+AE+EAL+KLG +MEEADKS+RRAAR+AEQLEA Q AN E EAE
Sbjct: 517 KGKFGDGIASEIEAARAAEQEALLKLGYVMEEADKSSRRAARVAEQLEATQVANSEMEAE 576

Query: 543 LRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDL 602
           LR+LKVQSDQWRKAAEAAA+MLS G+NGK  E++GS+DSNYN ITGKI  PYS+D+DD+ 
Sbjct: 577 LRKLKVQSDQWRKAAEAAAAMLSAGSNGKLTEKTGSLDSNYNHITGKITSPYSEDLDDES 636

Query: 603 LKKKNGNVLKKIGVLWKKPQK 623
            KKKNGNVLKKIGVLWKKP K
Sbjct: 637 PKKKNGNVLKKIGVLWKKPHK 657

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539100|ref|XP_003538038.1| PREDICTED: interactor of constitutive active ROPs 3-like [Glycine max]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/627 (59%), Positives = 485/627 (77%), Gaps = 16/627 (2%)

Query: 1   MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRSPRS 60
           MQTPK RSGSSE P KVSPRAVR+L  T L+  SASS +Q  ++ K++SPKV DRRSPRS
Sbjct: 1   MQTPKTRSGSSEVPQKVSPRAVRKLKPTTLDIDSASSLSQATKSSKERSPKVTDRRSPRS 60

Query: 61  PVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKL 120
           PV ERKRPS+ISELESQ+S+LQ DLKK K+QL  SES K+QAQQ+AE+SK+QLLALS+KL
Sbjct: 61  PVVERKRPSKISELESQISQLQNDLKKVKDQLILSESCKKQAQQEAEESKEQLLALSAKL 120

Query: 121 QESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQL 180
           +ESQKQ+ +L ++ EAR +ELQ + +E D +CQSEL++ + Q S++SAALASA NE+Q L
Sbjct: 121 EESQKQVLDLCSTGEARVLELQNIVEERDMACQSELESSKKQLSVESAALASATNEIQML 180

Query: 181 KAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA 240
           KAQ E+VA  E+ Q+++AESA +EL +LK NL ET+SL++ +KNQLR+ KESE QAQAL 
Sbjct: 181 KAQLELVANCESVQSQHAESADIELLNLKQNLSETLSLVDALKNQLRDCKESEAQAQALV 240

Query: 241 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 300
            ET++QLE AK +VE LRA+  KA++ Y+SIA EL++S  R+N LE LVS LE D  N  
Sbjct: 241 NETMMQLEAAKGTVEFLRADVAKAVDGYNSIAKELDQSEARVNSLEALVSNLETDPINNK 300

Query: 301 RNLSQNCSGDYDLGQK---IKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEG 357
             LS+N + D+    +   +K+ +D      LE E+ SLKSEV +LRSA+E AE K  E 
Sbjct: 301 CILSENVADDHKFEYQPEILKQGEDP---SQLEAEVVSLKSEVERLRSAIETAEIKYQEE 357

Query: 358 QIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEE 417
           Q +STV+I++A+E ++QIK +S  RE ELEAEL+K K+DIEELKANLMDKETELQGI EE
Sbjct: 358 QNRSTVQIRNAYELVDQIKSESCQRECELEAELKKKKADIEELKANLMDKETELQGIVEE 417

Query: 418 NEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477
           N+ L+++L +++  + E +L  ++++L + V +LKA++MDKET LQ+ISEENE LK E++
Sbjct: 418 NDNLNLKLQESMSSKNEHELKREIKRLEECVAELKADMMDKETMLQSISEENETLKSEMN 477

Query: 478 KRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANC 537
               +       +AAEVE  R+AE+EALMKLG++MEEADKSN++AAR+AEQLEA Q+AN 
Sbjct: 478 ----NCSKAREEVAAEVEQVRAAEREALMKLGIVMEEADKSNKKAARVAEQLEATQAANS 533

Query: 538 EAEAELRRLKVQSDQWRKAAEAAASMLSTG-NNGKCMERSGSIDSNYNPITGKIPLPYSD 596
           E EAELRRLKVQSDQWRKAAEAAA M+STG NNG+  ER+ S+D+N    +     PY++
Sbjct: 534 EMEAELRRLKVQSDQWRKAAEAAAVMISTGNNNGRLTERTVSLDNNNYKGS-----PYAE 588

Query: 597 DIDDDLLKKKNGNVLKKIGVLWKKPQK 623
           D+DDD  +KKNGN+LKKIGVLWKKPQK
Sbjct: 589 DMDDDFQRKKNGNMLKKIGVLWKKPQK 615

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568412|ref|XP_002525180.1| ATP binding protein, putative [Ricinus communis] gi|223535477|gb|EEF37146.1| ATP binding protein, putative [Ricinus communis]

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/621 (59%), Positives = 485/621 (78%), Gaps = 7/621 (1%)

Query: 6   ARSGSSEAPLK---VSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRSPRSPV 62
           +R+ SSE P +    +PR  RQL T   +S S SS N   RTPKDKSPKV +RRSPRSP 
Sbjct: 11  SRTSSSEVPQRKSPATPRTARQLKTPGSDSDSVSSPNPANRTPKDKSPKVTERRSPRSPA 70

Query: 63  SERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQE 122
            E+KRPSR+SELESQ+++LQEDLKKAK+QL++SESWK++A Q+AED+KKQLL +S+KL+E
Sbjct: 71  IEKKRPSRVSELESQLAQLQEDLKKAKDQLNTSESWKRRAHQEAEDTKKQLLTMSAKLEE 130

Query: 123 SQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKA 182
           S++QL ELSASE+AR  EL+K+S + D++ QSEL+A+Q QHS+DSAALASA+NE+Q+LK 
Sbjct: 131 SEQQLMELSASEDARVQELRKISHDRDKAWQSELEAVQKQHSMDSAALASAMNEIQKLKG 190

Query: 183 QFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE 242
           Q EMV +SE  QTK+AESAH +LQ L+  L ET+SL+E +KN+L + +ESE QA  L  +
Sbjct: 191 QLEMVMQSENTQTKHAESAHADLQGLRMELTETLSLVEKLKNELSDCRESEAQALELVSK 250

Query: 243 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRN 302
           T  QLE AK + E  R+EG KA+EAY+S++ ELE+S+T++  LE L+SKL+AD +N +  
Sbjct: 251 TEKQLEIAKATAEMHRSEGSKAMEAYNSLSLELEQSKTQVKSLEELISKLKADLANTDGK 310

Query: 303 LSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST 362
           L  N + D    Q+ +EN  T     L  EL+SLK E+GQLRSALE +E +  E  IQST
Sbjct: 311 LV-NSTVDTGPPQESEENDGT---NQLISELNSLKFELGQLRSALEASEARYQEEYIQST 366

Query: 363 VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLH 422
           ++I+SA+EQ+EQ+K +S  RE ELEAEL+ AKS+IEEL+A LMDKETELQ ISEENEGL+
Sbjct: 367 LQIRSAYEQVEQVKLESRKRETELEAELKNAKSNIEELRAKLMDKETELQNISEENEGLN 426

Query: 423 MQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELD 482
           ++ +KN   +RES+L  +L+KL   + DLKA+L+DKE ELQN++EENE+LK+EI K E++
Sbjct: 427 LKFEKNQPSERESELAIELKKLEHELADLKASLLDKEAELQNVTEENEILKMEIKKGEME 486

Query: 483 TPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAE 542
              +N    +  E A++AE+EALMKLG L EE DK++R+AAR  EQL+AAQ+AN E EAE
Sbjct: 487 RSEINDEAVSLAETAKAAEREALMKLGHLTEEVDKNSRKAARATEQLDAAQAANTEMEAE 546

Query: 543 LRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDL 602
           LRRLKVQSDQWRKAAEAAA+MLS+GNNGK +ER+GS++++YN I G +  PYS+D++DD 
Sbjct: 547 LRRLKVQSDQWRKAAEAAAAMLSSGNNGKFVERTGSLENSYNTIAGAMGSPYSEDMEDDS 606

Query: 603 LKKKNGNVLKKIGVLWKKPQK 623
            KKKNGN+LKKIGVLWKK QK
Sbjct: 607 PKKKNGNMLKKIGVLWKKGQK 627

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140161|ref|XP_002323453.1| predicted protein [Populus trichocarpa] gi|222868083|gb|EEF05214.1| predicted protein [Populus trichocarpa]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/625 (59%), Positives = 479/625 (76%), Gaps = 18/625 (2%)

Query: 1   MQTPKARSGSSEAPLKVSPRA--VRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRSP 58
           MQTPKA++ S E P K SP     RQL T   E+ S S  N   RTPKD+SPKV +RR  
Sbjct: 1   MQTPKAKTSSLEVPQKKSPATPRTRQLKTPGSENNSVSP-NPASRTPKDRSPKVTERRLS 59

Query: 59  RSPVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSS 118
           +SP +E+KRPSRISELE+Q+++LQEDLKKAK+QL++SESWK++A Q+AED+KKQLL +S 
Sbjct: 60  QSPATEKKRPSRISELETQLAQLQEDLKKAKDQLNASESWKRRAHQEAEDTKKQLLTMSE 119

Query: 119 KLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQ 178
           K +ESQ+QL ELS+SE+ R  EL+KVS + D++ QSEL+A+Q QHSIDSAALASA+NE+Q
Sbjct: 120 KFEESQQQLMELSSSEDVRVQELRKVSHDRDKAWQSELEAMQKQHSIDSAALASAMNEVQ 179

Query: 179 QLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQA 238
           +LK Q EMV ESEA+QTK+AESA+ ELQ L+  L ET+SL+E MK +L +++ESE QA  
Sbjct: 180 RLKNQLEMVVESEASQTKHAESAYAELQGLRLELTETLSLVEKMKTELSDTRESEAQALE 239

Query: 239 LARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 298
           L  +T  QLE A  + E L+A+ +KA+EAY S++ ELE+SR ++  LE LVSKL+AD +N
Sbjct: 240 LVSKTQKQLEEANATAEMLQADDVKAMEAYRSLSLELEQSRAQVKPLEELVSKLQADPAN 299

Query: 299 ANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQ 358
                  N +GD ++               L E+++ LK EVGQL+SALE +ET+  E  
Sbjct: 300 ICGKTVMNPTGDVEV---------------LHEKMNLLKHEVGQLKSALEASETRYQEEY 344

Query: 359 IQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEEN 418
           IQST++I+SA+EQ+E+ K +SG RE ELEAEL+KAK++IEEL+ANLMDKETELQGISEEN
Sbjct: 345 IQSTLQIRSAYEQVERTKLESGHREAELEAELKKAKNNIEELRANLMDKETELQGISEEN 404

Query: 419 EGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 478
           EGL ++++KN   +RES+L  +L+KL   + +LKA+L+DKE  LQ+++EENE L  EI K
Sbjct: 405 EGLALKIEKNQPSERESELAMELKKLEHDLAELKASLLDKEARLQSVAEENETLWKEIKK 464

Query: 479 RELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCE 538
            E++   +N    A  E AR+AE EALMKLG L EEADKS+RR AR+ EQL+AAQ+AN E
Sbjct: 465 GEMEKSKVNDEAVALAETARAAEHEALMKLGYLTEEADKSSRRVARVTEQLDAAQAANTE 524

Query: 539 AEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDI 598
            EAELRRLKVQSDQWRKAAEAAA+MLSTGNNGK +ER+GS+D+NYNPI G +  P+S+D+
Sbjct: 525 MEAELRRLKVQSDQWRKAAEAAAAMLSTGNNGKFVERTGSLDNNYNPIPGNMGSPFSEDM 584

Query: 599 DDDLLKKKNGNVLKKIGVLWKKPQK 623
           DDD  KKKNGN+LKKIGVLWK+ QK
Sbjct: 585 DDDSPKKKNGNMLKKIGVLWKRGQK 609

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459076|ref|XP_004147272.1| PREDICTED: interactor of constitutive active ROPs 3-like [Cucumis sativus]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/625 (59%), Positives = 481/625 (76%), Gaps = 13/625 (2%)

Query: 1   MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTC-RTPKDKSPKVIDRRSPR 59
           MQTPK+R+   EAP K SPR  R+L  TALE  S SSSNQ   R  K++SPKVIDR+SPR
Sbjct: 1   MQTPKSRNSLPEAPQKASPRVARKLRPTALECDSTSSSNQVNNRIIKERSPKVIDRKSPR 60

Query: 60  SPVS-ERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSS 118
           SP S E+KRPS+ISELESQVS+LQEDL   K+QL  SES K++ +QDAE++K QL+A++ 
Sbjct: 61  SPASVEKKRPSKISELESQVSQLQEDLTIVKDQLCLSESCKKEFKQDAEEAKDQLVAMTL 120

Query: 119 KLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQ 178
           KLQES+K + ELSASEEAR +ELQ++SQ+ DQ+ QSEL+AIQ QH +D +ALASA+NE+Q
Sbjct: 121 KLQESEKLVLELSASEEARVIELQQISQDRDQAWQSELEAIQEQHKLDYSALASAVNEIQ 180

Query: 179 QLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQA 238
           QLK Q EMVA+SE  +T++A+SA+ EL S +  L ET+ LME M+++L+  +ESE QAQ 
Sbjct: 181 QLKIQLEMVAQSETKKTEHADSANKELDSFRSKLAETLCLMERMEHELKNCRESEAQAQL 240

Query: 239 LARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 298
           LARETL QLE AK  +E LR +GM+A +AY++IA EL+ S+ R+N+LE LV KLE D +N
Sbjct: 241 LARETLAQLEDAKKRLEELRFDGMEAKKAYNAIALELDESKARVNILEKLVGKLETDVAN 300

Query: 299 ANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQ 358
           A+ NL Q+ +          EN+      H+ EEL SL+SE+ QL++ALE+AE K +E Q
Sbjct: 301 ASSNLLQHPAV---------ENEKKRGEDHI-EELCSLRSEIEQLKTALEVAEAKYHEDQ 350

Query: 359 IQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEEN 418
           IQS V+IK A+EQ+EQIK     RE  LE EL+K K+DIEELKA+LMDKETELQGISEEN
Sbjct: 351 IQSAVQIKMAYEQVEQIKSNKNSREFNLEQELKKFKADIEELKADLMDKETELQGISEEN 410

Query: 419 EGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 478
           E L  ++ KNL  QRE +L  ++++L + + +LK++L DKE +  +IS+ENEMLKLEI+K
Sbjct: 411 EQLQAKIQKNLSSQREYELEREIKELKEHLVELKSSLTDKERDYHSISDENEMLKLEINK 470

Query: 479 RELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCE 538
           R +      SN   EVE A +AE++AL++LG++MEEADKSN+RAAR++EQLEAAQ+AN E
Sbjct: 471 RIMIRAKA-SNGTTEVEDATAAEQDALIRLGIVMEEADKSNKRAARVSEQLEAAQAANAE 529

Query: 539 AEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDI 598
            E ELRRL+VQSDQWRKAAEAAA+MLS GNNGK M+RSGS+DS+Y+   GK    Y ++I
Sbjct: 530 IETELRRLRVQSDQWRKAAEAAAAMLSAGNNGKLMDRSGSLDSSYDSAAGKFNGSYCEEI 589

Query: 599 DDDLLKKKNGNVLKKIGVLWKKPQK 623
           DDDLLKKKNGNVLKKIGVLWKK QK
Sbjct: 590 DDDLLKKKNGNVLKKIGVLWKKQQK 614

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542561|ref|XP_003539735.1| PREDICTED: interactor of constitutive active ROPs 3-like isoform 1 [Glycine max] gi|356542563|ref|XP_003539736.1| PREDICTED: interactor of constitutive active ROPs 3-like isoform 2 [Glycine max]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/627 (59%), Positives = 493/627 (78%), Gaps = 16/627 (2%)

Query: 1   MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRSPRS 60
           MQTPK R+GSS+ P KVSPRAVRQL  T L+  SASS +Q  ++ K++SPKV DRRSPRS
Sbjct: 1   MQTPKTRNGSSDVPQKVSPRAVRQLKPTTLDIDSASSLSQATKSSKERSPKVTDRRSPRS 60

Query: 61  PVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKL 120
           PV ERKRPS+ISELESQ+S+LQ DLKK ++Q   SES K+QAQQ+AE+SK+QLLALS+KL
Sbjct: 61  PVIERKRPSKISELESQISQLQNDLKKVRDQFILSESCKKQAQQEAEESKEQLLALSAKL 120

Query: 121 QESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQL 180
           +ESQKQ+ +L A+ EAR +ELQK+ +E D +C+SEL+A + Q S++SA+LASA NE+Q L
Sbjct: 121 EESQKQVLDLCATGEARVLELQKIVEERDMACRSELEASKKQLSVESASLASAANEIQLL 180

Query: 181 KAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA 240
           KAQ E+VA  E+ Q+++AESA +EL +LK NL ET+SL++ +KNQ+R+ KESE QAQAL 
Sbjct: 181 KAQLELVANCESVQSQHAESADMELLNLKQNLSETLSLVDALKNQVRDCKESEAQAQALV 240

Query: 241 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN 300
            ET +QLE AK +VE LRA+  +A++ Y+S+A EL++S+ R+N LE LVSK+E D  N  
Sbjct: 241 NETTVQLEAAKGTVEFLRADVARAVDGYNSVALELDQSKARVNSLEALVSKIEKDPINNK 300

Query: 301 RNLSQNCSGDYDLGQK---IKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEG 357
              S+N + D+    +   +KE +D      LE E+ SLKSEV QLRSA+E AETK  E 
Sbjct: 301 CIPSENVADDHKSEHQPEILKEGEDP---NQLEAEVVSLKSEVEQLRSAIETAETKYQEE 357

Query: 358 QIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEE 417
           QI+S V+I++A+E +EQIK +SG RE ELEAEL+K K+DIEELKANLMDKETELQGI EE
Sbjct: 358 QIRSMVQIRNAYELVEQIKSESGKRECELEAELKKKKADIEELKANLMDKETELQGIVEE 417

Query: 418 NEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477
           N+ L+++L++++  + E +L  ++++LA+ V +LKA++MDKET LQ+ISEENEMLK EI+
Sbjct: 418 NDNLNLKLEESMSSKNEHKLKREIKRLAECVAELKADMMDKETTLQSISEENEMLKSEIN 477

Query: 478 KRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANC 537
               ++      +AAEVE A++AE EALMKLG++MEEADKSN++AAR+AEQLEAAQ+AN 
Sbjct: 478 ----NSGKAREEVAAEVEGAKAAEHEALMKLGIVMEEADKSNKKAARVAEQLEAAQAANL 533

Query: 538 EAEAELRRLKVQSDQWRKAAEAAASMLSTG-NNGKCMERSGSIDSNYNPITGKIPLPYSD 596
           E EAELRRLKVQSDQWRKAAEAAA+M+STG NNG+  ER+ S+D+N    +     PY++
Sbjct: 534 EMEAELRRLKVQSDQWRKAAEAAAAMISTGNNNGRLTERTVSLDNNNYMCS-----PYAE 588

Query: 597 DIDDDLLKKKNGNVLKKIGVLWKKPQK 623
           D+DDD  +KKNGN+LKKIGVLWKKPQK
Sbjct: 589 DMDDDFQRKKNGNMLKKIGVLWKKPQK 615

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439892|ref|XP_002279291.1| PREDICTED: interactor of constitutive active ROPs 2, chloroplastic-like [Vitis vinifera]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/626 (58%), Positives = 491/626 (78%), Gaps = 8/626 (1%)

Query: 1   MQTPKARSGSSEAPLKVSP---RAVRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRS 57
           MQTPK R+GS E P + SP   R  R+L T   +  S SS +   RTPKD+SPK++  +S
Sbjct: 1   MQTPKRRTGSLEVPPRTSPATPRTARKLKTPGSDGDSVSSPHPASRTPKDRSPKIV--KS 58

Query: 58  PRSPVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALS 117
            RSPVSE+KRPS++SELESQV++LQEDLKK K+QL+SSESWK++A Q+AE++KKQLLA+S
Sbjct: 59  TRSPVSEKKRPSKLSELESQVAQLQEDLKKTKDQLNSSESWKRRAHQEAEEAKKQLLAVS 118

Query: 118 SKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNEL 177
           +KL+ESQ+QL ELSASEE R  EL+K+SQ+ D++ QSEL+A+Q QHS+DSAAL SA+NE+
Sbjct: 119 AKLEESQQQLLELSASEEDRVQELRKISQDRDRAWQSELEAVQKQHSMDSAALVSAMNEI 178

Query: 178 QQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQ 237
           Q+LK Q EMVA+SEA+QTK+AESAH+E+Q L+  L +T+SL+E MK QL + KESE +A 
Sbjct: 179 QKLKIQLEMVADSEASQTKHAESAHVEIQRLRIELADTLSLVEEMKTQLNDRKESEARAL 238

Query: 238 ALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 297
            +  +T +QLETAK + E +R++G+KA+EAY+SI  EL++S  ++N LEGLVSKL+ D  
Sbjct: 239 KVVTQTQMQLETAKAAAETIRSDGVKAMEAYNSITLELDQSNAQVNSLEGLVSKLQEDLV 298

Query: 298 NANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEG 357
           N++   + N S D  L ++  EN+DT     L++EL+ ++ EVGQLRSAL+ AE +  E 
Sbjct: 299 NSSSTSAANPSDDAKLARENGENEDT---NQLKQELNLVRFEVGQLRSALDAAEIRYQEE 355

Query: 358 QIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEE 417
            IQST++I+SA+EQ E+ + +S  RE ELEAEL+KAK  +E+LK NLMDKET+LQ ISEE
Sbjct: 356 YIQSTLQIRSAYEQAERTRSESRQREAELEAELRKAKVIVEDLKVNLMDKETKLQNISEE 415

Query: 418 NEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477
           N+ L++++++N   +RE +L  +L+K    + DLK +L+DKETELQ+I+EENEMLKLEI 
Sbjct: 416 NKVLNVKIEQNQSNEREPELQMELKKSEATLADLKTSLLDKETELQSITEENEMLKLEIK 475

Query: 478 KRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANC 537
           K+E +   +N    A++EAA++AEKEAL KLG L EEADK++RRA R+ EQL+A Q+AN 
Sbjct: 476 KKETENDKVNDEAVAKIEAAKAAEKEALTKLGYLTEEADKNSRRAERVTEQLDATQAANS 535

Query: 538 EAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDD 597
           E EAELRRLKVQSDQWRKAAEAAA+MLSTGNNGK +ER+GS+D+NY+ I  +I  P S+D
Sbjct: 536 ELEAELRRLKVQSDQWRKAAEAAAAMLSTGNNGKIVERTGSLDNNYHTIGARIGSPCSED 595

Query: 598 IDDDLLKKKNGNVLKKIGVLWKKPQK 623
           +DDD  KKKNGN+LKKIGVLWKK QK
Sbjct: 596 MDDDSPKKKNGNMLKKIGVLWKKGQK 621

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511468|ref|XP_004163963.1| PREDICTED: LOW QUALITY PROTEIN: interactor of constitutive active ROPs 3-like [Cucumis sativus]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/625 (58%), Positives = 476/625 (76%), Gaps = 13/625 (2%)

Query: 1   MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTC-RTPKDKSPKVIDRRSPR 59
           MQTPK+R+   EAP K SPR  R+L  TALE  S SSSNQ   R  K++SPKVIDR+SPR
Sbjct: 1   MQTPKSRNSLPEAPQKASPRVARKLRPTALECDSTSSSNQVNNRIIKERSPKVIDRKSPR 60

Query: 60  SPVS-ERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSS 118
           SP S E+KRPS+ISELESQVS+LQEDL   K+QL  SES K++ +QDAE++K QL+A++ 
Sbjct: 61  SPASVEKKRPSKISELESQVSQLQEDLTIVKDQLCLSESCKKEFKQDAEEAKDQLVAMTL 120

Query: 119 KLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQ 178
           KLQES+K + ELSASEEAR +ELQ++SQ+ DQ+ QSEL+AIQ QH +D +ALASA+NE+Q
Sbjct: 121 KLQESEKLVLELSASEEARVIELQQISQDRDQAWQSELEAIQEQHKLDYSALASAVNEIQ 180

Query: 179 QLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQA 238
           QLK Q EMVA+SE  +T++A+SA+ EL S +  L ET+ LME M+++L+  +ESE QAQ 
Sbjct: 181 QLKIQLEMVAQSETKKTEHADSANKELDSFRSKLAETLCLMERMEHELKNCRESEAQAQL 240

Query: 239 LARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 298
           LARETL QLE AK  +E LR +GM+A +AY++IA EL+ S+ R+N+LE LV KLE D +N
Sbjct: 241 LARETLAQLEDAKKRLEELRFDGMEAKKAYNAIALELDESKARVNILEKLVGKLETDVAN 300

Query: 299 ANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQ 358
           A+ NL Q+ +          EN+      H+ EEL SL+SE+ QL++ALE+AE K +E Q
Sbjct: 301 ASSNLLQHPAV---------ENEKKRGEDHI-EELCSLRSEIEQLKTALEVAEAKYHEDQ 350

Query: 359 IQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEEN 418
           IQS V+IK A+EQ+EQIK     RE  LE EL+K K+DIEELKA+LMDKETELQGISEEN
Sbjct: 351 IQSAVQIKMAYEQVEQIKSNKNSREFNLEQELKKFKADIEELKADLMDKETELQGISEEN 410

Query: 419 EGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK 478
           E L  ++ KNL  QRE +L  ++++L + + +LK++L DKE +  +IS+ENEMLKLEI+K
Sbjct: 411 EQLQAKIQKNLSSQREYELEREIKELKEHLVELKSSLTDKERDYHSISDENEMLKLEINK 470

Query: 479 RELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCE 538
           R +      SN   EVE A +AE++AL++LG++MEEADKSN+RAAR++EQLEAAQ+AN E
Sbjct: 471 RIMIRAKA-SNGTTEVEDATAAEQDALIRLGIVMEEADKSNKRAARVSEQLEAAQAANAE 529

Query: 539 AEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDI 598
            E ELRRL+VQSDQWRKAAEAAA+MLS GNNGK M+RSGS+DS+Y+   GK    Y ++I
Sbjct: 530 IETELRRLRVQSDQWRKAAEAAAAMLSAGNNGKLMDRSGSLDSSYDSAAGKFNGSYCEEI 589

Query: 599 DDDLLKKKNGNVLKKIGVLWKKPQK 623
           DDDLLK+K     KKIGVLWKK QK
Sbjct: 590 DDDLLKRKXWKCAKKIGVLWKKQQK 614

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	623
UNIPROTKB|Q8VXD2	601	p70 "P70 protein" [Nicotiana t	0.849	0.880	0.366	4.1e-81
TAIR|locus:2144040	564	RIP5 "ROP interactive partner	0.818	0.904	0.353	2.6e-70
TAIR|locus:2061758	583	RIP2 "ROP interactive partner	0.807	0.862	0.331	2.5e-58
TAIR|locus:2032095	324	RIP4 "AT1G78430" [Arabidopsis	0.329	0.632	0.32	1.3e-35
TAIR|locus:2083951	396	RIP3 "ROP interactive partner	0.457	0.719	0.359	2.3e-35
TAIR|locus:2020342	344	ICR1 "AT1G17140" [Arabidopsis	0.365	0.662	0.301	7.4e-21
TAIR|locus:2010826	1345	AT1G65010 [Arabidopsis thalian	0.770	0.356	0.256	1.7e-20
UNIPROTKB|E1BRE5	1411	EEA1 "Uncharacterized protein"	0.868	0.383	0.204	1.5e-14
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.802	0.488	0.205	7e-14
ASPGD|ASPL0000015455	1157	AN3906 [Emericella nidulans (t	0.871	0.469	0.229	5.6e-14

UNIPROTKB|Q8VXD2 p70 "P70 protein" [Nicotiana tabacum (taxid:4097)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 203/554 (36%), Positives = 322/554 (58%)

Query:     1 MQTPKARSGSSEAPLKVSP---RAVRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRS 57
             MQTPKAR+ S E P + SP   +  R+L T   ++ S SS N   RTPKD+SPKV+ RRS
Sbjct:     1 MQTPKARTVSVEVPQRTSPATPKTTRKLKTPGSDADSVSSPNPATRTPKDRSPKVVGRRS 60

Query:    58 PRSPVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDXXXXXXXXX 117
             PRSPV E+KRPS++S+LE+Q+++LQE+LKKAK+QL+SSES K++AQQDA++         
Sbjct:    61 PRSPVIEKKRPSKVSDLEAQLAQLQEELKKAKDQLNSSESLKKRAQQDADEAKKQLAVMS 120

Query:   118 XXXXXXXXXXXXXXXXXXARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNEL 177
                               AR +EL+K+SQ+ D++ +SEL+AIQ QH +DSAALASALNE+
Sbjct:   121 EKLEDSKKQLLELSDSEEARLLELRKISQDRDRAWESELEAIQKQHELDSAALASALNEI 180

Query:   178 QQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQ 237
             Q+LK Q + VA+SEA Q  +AESAH E+QSL+  L+ET++L+E ++NQL +SKESE  + 
Sbjct:   181 QKLKIQLDRVADSEATQAHHAESAHAEIQSLRVELMETLTLVEKLRNQLNDSKESEACSL 240

Query:   238 ALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 297
                 +  +QLE +K++ + LR+EG+KA++A  +++ ELE+S+ R+  LE LVSKL++  S
Sbjct:   241 EEVSKAQMQLEMSKMTEDTLRSEGLKAMDACRTLSLELEKSKDRVASLEELVSKLQSSES 300

Query:   298 N-ANRNLSQNCSGDYDLGQKIKENQDTMXXXXXXXXXXXXXXXVGQLRSALEIAE-TKLN 355
             + A          D +L  ++ E +  +               + Q+RSA E+ E TK  
Sbjct:   301 SVAAEGNGVTVEAD-ELKAEVSELRAALEASERKYQEEYIQSTL-QIRSAYELVERTKSE 358

Query:   356 EGQIQST--VKIKSAFEQLEQIKHQSGLREVELE--AELQKAKS-DIEELKANLMDKETE 410
               Q ++    K+     +++++K +   +E EL+  ++  K  S  +E++++   DKE E
Sbjct:   359 STQREAEWEAKLNETKSEVQELKEKLMNKEAELQNISDENKGLSLHVEQMQS--ADKEFE 416

Query:   411 LQGISEENEGLHMQLDKNLMCQRESQLN-----NDLRKLAQAVEDLKANLMDKET----E 461
             L    +++E +   L  NL+  +E++L      N+L K      + ++  M  E     E
Sbjct:   417 LSAQLKQSESISGDLRGNLL-DKENELQSLMEENELLKSEIGKRESESTKMSDEALALVE 475

Query:   462 LQNISEENEMLKLEISKRELDTPNMN-SNLAAEVEAARSAEKEALMKLGLLMEEADKSNR 520
                 +E   ++KL     E D  +   + +  E++AA++A  E   +L  L  + D+  +
Sbjct:   476 AAKTAESEALIKLGDLTEEADRSSRKVARVTEELDAAQTANSEMETELRRLKVQCDQWRK 535

Query:   521 RAARMAEQLEAAQS 534
              A   A  L A  +
Sbjct:   536 AAEAAASMLSAGNN 549

GO:0051219 "phosphoprotein binding" evidence=IPI

TAIR|locus:2144040 RIP5 "ROP interactive partner 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 191/540 (35%), Positives = 303/540 (56%)

Query:     1 MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSS-NQTCRTPKDKSPKVIDRRSPR 59
             MQT KAR+GS + P KVSPRA R L   ALE +S+SS  + T RTPKDKSP V++RRSPR
Sbjct:     1 MQTQKARNGSPDVPKKVSPRAARPLKIAALEPESSSSPISATNRTPKDKSPNVLNRRSPR 60

Query:    60 SPVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDXXXXXXXXXXX 119
             SPVSE+KRPSRI+ELE  VS+LQE+LKKAK+Q+S SE+ K+QA+Q+AE+           
Sbjct:    61 SPVSEKKRPSRITELELLVSQLQEELKKAKDQISVSETSKKQAEQEAEESRKQLQEVSSK 120

Query:   120 XXXXXXXXXXXXXXXXARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQ 179
                                     V Q   Q C  E  A   +     A LA+  +E++Q
Sbjct:   121 LEESQNQFVETSALEEETDKTGSLVFQSVSQECDWEFSATAGER----AGLAAVAHEIRQ 176

Query:   180 LKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQAL 239
             LK Q EMVA SEA   K AE  + E+Q L+GNL++T+  +EN +NQL++ + SE + +AL
Sbjct:   177 LKLQIEMVASSEAGHVKQAELYNSEVQLLRGNLMDTLFHVENFRNQLKDCEISEAETEAL 236

Query:   240 ARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNA 299
             A ETL QLE AK +VE L+++G KA+E+Y  +A ELE+S++R+  LE LV+KL+ + ++ 
Sbjct:   237 ATETLRQLENAKKAVEELKSDGTKAVESYKKMAVELEQSKSRMVWLEALVNKLQNNPADL 296

Query:   300 NRNLSQNCSGDYDLGQKIKENQDTMXXXXXXXXXXXXXXXVGQLRSALEIAETKLNEGQI 359
               +  +    DY+  ++ + N+                  V +LR+ALE ++ K  EG +
Sbjct:   297 ENH--EILLKDYESLRRGESNE-------MDEEVSSLRCEVERLRAALEASDKKDQEGNV 347

Query:   360 QSTVKIKSAFEQLEQIK-HQSGLREVEL-----EAELQKAKSDIEELKANLMDKETELQG 413
             +++ +++   E   ++K  +S + E++      E ELQ    + +     LM  + E+  
Sbjct:   348 EASSRLRIQAELQSELKIAKSEIDELKARLMDKETELQFISEERDNFSMKLMKNQKEID- 406

Query:   414 ISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLK 473
             +  E + L   ++ NL      +   +L+ ++   E LK+++   ET++Q+       LK
Sbjct:   407 VEAELKKLREAIE-NLKADLMDK-ETELQIVSDENETLKSDIHKSETDVQDA-----FLK 459

Query:   474 LEISKRELDTPNMNS-NLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAA 532
             L I+  E D  +  +  +  ++EA +++  E   +L  L  ++++  R+AA  A  + +A
Sbjct:   460 LGIAMEEADKSSKKAVRVTEQLEATQASNSEMETELRKLKVQSNQW-RKAAEAATAMLSA 518

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=RCA

TAIR|locus:2061758 RIP2 "ROP interactive partner 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 185/558 (33%), Positives = 295/558 (52%)

Query:     1 MQTPKARSGSSEAPLKVSP----RAVRQLNTTALESKSASSSNQTCRTPKDKSPKVI-DR 55
             MQTPK R GS E P K SP    +  R+L T+  ES   SS N   RTPK +SPKV+ DR
Sbjct:     1 MQTPKPRPGSLEVPQKKSPASTPKTARKLKTS--ESDPVSSPNTKIRTPKTQSPKVVADR 58

Query:    56 RSPRSPVSE--RKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDXXXXX 113
             RSPR+PV+E  +KR  +  EL SQ+S+LQE+LKKAK QLS+SE+ K++AQ  AE+     
Sbjct:    59 RSPRTPVNEIQKKRTGKTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQL 118

Query:   114 XXXXXXXXXXXXXXXXXXXXXXARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASA 173
                                   +R  EL+K+SQE D++ QSEL+A+Q QH++DSAAL+S 
Sbjct:   119 MEINASED--------------SRIDELRKLSQERDKAWQSELEAMQRQHAMDSAALSST 164

Query:   174 LNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESE 233
             +NE+Q+LKAQ   ++ESE     N E+  +EL        ET+SL+E ++ +L ++KE E
Sbjct:   165 MNEVQKLKAQ---LSESE-----NVENLRMELN-------ETLSLVEKLRGELFDAKEGE 209

Query:   234 TQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE 293
              QA  +   T  QLE A L++E LR++GMK  EA +S+ +ELE+S++ +  LE LV +LE
Sbjct:   210 AQAHEIVSGTEKQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLE 269

Query:   294 ADTSNANRNLSQNCSGDYDLGQKIKENQDTMXXXXXXXXXXXXXXXVGQLRSALEIAETK 353
              +   A  N + + S   +L ++I   +  +                  ++S L+I    
Sbjct:   270 EE-DEARGNANGDSSSVEELKEEINVARQEISQLKSAVEVTERRYHEEYIQSTLQIRTAY 328

Query:   354 LNEGQIQSTVKIKSAF--EQLEQIK-HQSGLRE--VELEAELQKAKSDIEELKANLMDKE 408
                 +++S    + A   E+L++ K  +  L E  ++ EA+L+    + E L + + +KE
Sbjct:   329 EQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDENEILNSKIKEKE 388

Query:   409 T---ELQGISEENE----GLHMQLDKNLMCQRESQLNND--LRKLAQAVEDLKANLMDKE 459
                  L+    +NE    G   +L+ ++M  R + ++ +  L+ +    E L++ +   +
Sbjct:   389 EVYLNLENSLNQNEPEDTGELKKLESDVMELRANLMDKEMELQSVMSQYESLRSEMETMQ 448

Query:   460 TELQNISEENEMLKLEISKRELDTPNMNSNLAAE-VEAARSAEKEALMKLGLLMEEADKS 518
             +E +N + +  + KL     E D     +  A E + AA+    E   +L  L  + D+ 
Sbjct:   449 SE-KNKAIDEALAKLGSLTEEADKSGKRAENATEQLGAAQVTNTELEAELRRLKVQCDQW 507

Query:   519 NRRAARMAEQLEAAQSAN 536
              + A   A  L    + N
Sbjct:   508 RKAAEAAATMLSGGNNNN 525

GO:0009507 "chloroplast" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

TAIR|locus:2032095 RIP4 "AT1G78430" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
 Identities = 72/225 (32%), Positives = 118/225 (52%)

Query:   364 KIKSAFEQLEQIKHQSGLREV---ELEAELQKAKSDIEELKANLMDKETELQGISEENEG 420
             ++  A E+L  +K Q    E      + EL + KS      A   D   ++ G   +   
Sbjct:    76 QLGQAQEELRLLKQQLAKAEAAKKRAQEELHRKKSKKPNTPAPERD---DIPGDGHQETD 132

Query:   421 LHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRE 480
             +   LD+    + E   N++L      +  LKA L D E E  ++SEENE LK ++ K  
Sbjct:   133 VFEVLDEKAK-ESEKTKNDELASKEDQINVLKARLYDLEKERVSLSEENETLKDQLKKT- 190

Query:   481 LDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAE 540
              DT         E+  A++ E E   K+  + EE ++SN   A++ ++LE+ + A    E
Sbjct:   191 -DT---------EMSCAKAKEDEIASKVSQIGEELEESNETTAKLKKKLESVEEAKETLE 240

Query:   541 AELRRLKVQSDQWRKAAEAAASMLSTG--NNGKCMERSGSIDSNY 583
             AE+++LKVQ++QWRKAA+AAA++LS G   NG+  E+ GS++ ++
Sbjct:   241 AEMKKLKVQTEQWRKAADAAAAVLSGGVEMNGRFSEQCGSMEKHF 285

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2083951 RIP3 "ROP interactive partner 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 2.3e-35, P = 2.3e-35
 Identities = 114/317 (35%), Positives = 180/317 (56%)

Query:     1 MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVI-DRRSPR 59
             MQTPK+R GS E P K SP    ++    L+   A S  +T    K + PKV+ DRRS R
Sbjct:     1 MQTPKSRPGSLELPQKKSPLPAPKV-VRRLKPSGAESDPKTKTISKTQIPKVVADRRSAR 59

Query:    60 SPVSE--RKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDXXXXXXXXX 117
              P++E  +KR  RI ELES +S+LQE+LKKAK +L+ SE+ K++AQ++AED         
Sbjct:    60 IPLNEIQKKRTGRIPELESTISQLQEELKKAKEELNRSEALKREAQEEAEDAKHQLMDIN 119

Query:   118 XXXXXXXXXXXXXXXXXXARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNEL 177
                               +R  EL+K+SQE D++ QSEL+A+Q QH +DS AL+SA+NE+
Sbjct:   120 ASED--------------SRIEELRKLSQERDKTWQSELEAMQRQHGMDSTALSSAINEV 165

Query:   178 QQLKAQ-FEMVAESEAA--QTKNAESAHLELQSLKGNLIETISLME--NMKNQLRESKES 232
             Q+LK++ FE  +E E +  + ++ E    +L+  + N  ++ S ME   +K  +  S++ 
Sbjct:   166 QKLKSKLFESESELEQSKYEVRSLEKLVRQLEEERVNSRDSSSSMEVEELKEAMNLSRQE 225

Query:   233 ETQAQAL--ARETLLQLETAKLSVEALRA-EGMKAIEA-YSS----IASELERSRTRIN- 283
              TQ ++   A ET  Q E  + +++   A E  +A+++ YS     +  EL R++  I  
Sbjct:   226 ITQLKSAVEAAETRYQEEYIQSTLQIRSAYEQTEAVKSRYSQREAELTEELNRTKDEIEG 285

Query:   284 LLEGLVSKLEADTSNAN 300
             L + L+ K++ D S  +
Sbjct:   286 LRKELMEKVKEDESTGD 302

GO:0005634 "nucleus" evidence=IDA

GO:0005874 "microtubule" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IDA

GO:0043622 "cortical microtubule organization" evidence=IDA

TAIR|locus:2020342 ICR1 "AT1G17140" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 7.4e-21, P = 7.4e-21
 Identities = 77/255 (30%), Positives = 139/255 (54%)

Query:   340 VGQLRSALEIAETKLNEGQIQSTVKI-KSAFEQLEQIKHQSGLREVELEAELQKAKSDIE 398
             +GQ +    I++ +   GQ Q  +++ K      E +K Q+   E+  +++     + +E
Sbjct:    58 LGQKKLGGRISDLESQLGQAQEELRLLKEQLANAEAVKKQAQ-DELHKKSKKPNPLARVE 116

Query:   399 E--LKANLMDKETELQG-ISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVED----L 451
             E   +A  +D++ E+ G + +E +   + ++K  + + E +  ND  +   A ED    L
Sbjct:   117 ESATEAERIDRD-EIPGDVQKETDVFEVPVEKIAVEEEELRSGNDEAEKLVAKEDEIKML 175

Query:   452 KANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLL 511
             KA L D E E +++ +ENE LK           N  S+ A+E+   ++ E E + K+  +
Sbjct:   176 KARLYDMEKEHESLGKENESLK-----------NQLSDSASEISNVKANEDEMVSKVSRI 224

Query:   512 MEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGN--- 568
              EE ++S  + A + E+LE+ + A    EAE+++L+VQ++QWRKAA+AAA++LS G    
Sbjct:   225 GEELEESRAKTAHLKEKLESMEEAKDALEAEMKKLRVQTEQWRKAADAAAAVLS-GEFEM 283

Query:   569 NGKCMERSGSIDSNY 583
             NG+  +RSGS +  Y
Sbjct:   284 NGR--DRSGSTEKYY 296

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0090404 "pollen tube tip" evidence=IDA

GO:2000012 "regulation of auxin polar transport" evidence=IMP

TAIR|locus:2010826 AT1G65010 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 136/531 (25%), Positives = 240/531 (45%)

Query:     1 MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVI------D 54
             M+TP  RS  S  P    PR + +L+ +  +S SAS    T R   D+SP  +      D
Sbjct:    10 METP--RSKPSPPP----PR-LSKLSASKSDSNSASPVPNT-RLSLDRSPPTVNSKPTPD 61

Query:    55 RRSPRSPVSERKRPSRI---SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDXXX 111
             RR  R P  E+   SR+   +EL++Q++++QEDLKKA  Q+   +  K +A  D ++   
Sbjct:    62 RRPSRIPTPEKVH-SRLVKGTELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEK 120

Query:   112 XXXXXXXXXXXXXXXXXXXXXXXXA---RAVELQKVS----QETDQSCQSELQAIQNQHS 164
                                         RAVEL++      Q+ D + ++EL++I++QH+
Sbjct:   121 LVEEANEKLKEALAAQKRAEESFEVEKFRAVELEQAGLEAVQKKDVTSKNELESIRSQHA 180

Query:   165 IDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAH--LELQSLKGNLIETISLMENM 222
             +D +AL S   ELQ++K +  M A+++     +AE A    E+ + K  ++   S +  +
Sbjct:   181 LDISALLSTTEELQRVKHELSMTADAKNKALSHAEEATKIAEIHAEKAEILA--SELGRL 238

Query:   223 KNQL--RESKES----ETQAQALARETLLQLETAKLSV--EALRA-EGMKAIEAYSSIAS 273
             K  L  +E KE+    E  ++  +   LL+ E  K+S+   +L+  EG+         A+
Sbjct:   239 KALLGSKEEKEAIEGNEIVSKLKSEIELLRGELEKVSILESSLKEQEGLVEQLKVDLEAA 298

Query:   274 ELERSRTRINLLE--GLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMXXXXXXX 331
             ++  S T  ++ E    V +LE +   +NR+ S        + +++ E    +       
Sbjct:   299 KMAESCTNSSVEEWKNKVHELEKEVEESNRSKSSASESMESVMKQLAELNHVLHETKSDN 358

Query:   332 XXXXXXXXVGQLRSALEIAETKLNE-G-QIQSTVKIKSAFEQL-EQIKHQSGLREVELEA 388
                     +  L   +E   T L E G Q+    +  S  E L E IK +  + + E   
Sbjct:   359 AAQKEKIEL--LEKTIEAQRTDLEEYGRQVCIAKEEASKLENLVESIKSELEISQEEKTR 416

Query:   389 ELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAV 448
              L   K+    ++ NL+D+ TEL   S E E   ++ +K+     ES L   L++ +   
Sbjct:   417 ALDNEKAATSNIQ-NLLDQRTEL---SIELERCKVEEEKSKK-DMES-LTLALQEASTES 470

Query:   449 EDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARS 499
              + KA L+  + EL+N   + + LKL   +       M  +   E+++ +S
Sbjct:   471 SEAKATLLVCQEELKNCESQVDSLKLASKETNEKYEKMLEDARNEIDSLKS 521

GO:0005634 "nucleus" evidence=ISM

GO:0009908 "flower development" evidence=IMP

GO:0007020 "microtubule nucleation" evidence=RCA

UNIPROTKB|E1BRE5 EEA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 223 (83.6 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 120/588 (20%), Positives = 242/588 (41%)

Query:    12 EAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRSPRSPVSERKRPSRI 71
             +A L  S  +V++L T   E   AS   +   +  +   + +     +      ++    
Sbjct:   350 QAKLSASEASVQRLQTELGEKGEASQKLKEELSEVETKYQHLKAECKQLQQQREEKEQHG 409

Query:    72 SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDXXXXXXXXXXXXXXXXXXXXXXX 131
              +L+S++S+L   L + + QL  +    ++ +Q + +                       
Sbjct:   410 LQLQSELSQLHSKLLETERQLGEAHGRLKEQRQLSSEKLMDREQQVADLQLKLSRAEEQL 469

Query:   132 XXXXARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESE 191
                 A + ELQ    +  Q  Q E Q +Q Q++  ++ L  A N+L+Q+  Q   + + +
Sbjct:   470 KEKVANSTELQHQLDKAKQQHQ-EQQTLQ-QNT--TSKLREAQNDLEQVLRQ---IGDKD 522

Query:   192 AAQTKNAESAHLELQSLKGNLIETISLMENMKNQLR---ESKESETQA--QALARETLLQ 246
               + +N E+    LQ  K    E ISL+E  +  L    ++ E ET    Q   +   LQ
Sbjct:   523 Q-KIQNLEAL---LQKSK----ENISLLEKEREDLYAKIQAGEGETAVLNQLQEKNHALQ 574

Query:   247 LETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQN 306
             ++  +L+ E L+ +     +A  ++  +++  +  +   +  V  LEA+ +  +  L+++
Sbjct:   575 IQVTQLT-EKLKNQSESHKQAQENLHEQVQEQKAHLRAAQDRVLSLEANITELSSQLNES 633

Query:   307 CSGDYDLGQKIKENQDTMXXXXXXXXXXXXXXX--VGQLRSALEIAETKLNEGQIQS--- 361
                   L  ++K   + +                 +   + AL+  + +LN+  +Q    
Sbjct:   634 KEKVSQLDVQVKAKTELLLSAEASKAAQRADLQNHLDTAQHALQDKQQELNKVSVQLDQV 693

Query:   362 TVKIKSAFE---QLE----QIKHQSGLREV---ELEAELQKAKSDIEELKANLMDKETEL 411
             T K+    E   QLE      K Q    E    ELE +L+K ++D+ + KA+   KE  L
Sbjct:   694 TAKLNDKQEYCAQLEANLKDYKEQHLYLEQKTEELEGQLKKLEADVLDAKAS---KEQAL 750

Query:   412 QGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNIS---EE 468
             Q + ++ +    +LD  +  +   QL  +   ++ A  DL+      E   Q IS   EE
Sbjct:   751 QELQQQRQQ-STELDLRI-AELSKQLEAEREAMSSAKSDLQKKSEALEQAKQQISKQEEE 808

Query:   469 NEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQ 528
             N  LK  + K   DT     +L  +++AA S  ++  ++   L+++   +  + ++ +E 
Sbjct:   809 NASLKKNLEKSSQDTSKQLKDLDCKMQAATSELQQVKLEKDTLLKDLTSTKEKLSKSSES 868

Query:   529 LEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERS 576
              +  +    E E E+ + K    +  K+ +     L         ER+
Sbjct:   869 FKKRKE---ELEKEIEKGKAAVAEMEKSYQEVKQQLQVQTESVAKERN 913

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005545 "1-phosphatidylinositol binding" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005969 "serine-pyruvate aminotransferase complex" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 226 (84.6 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
 Identities = 111/540 (20%), Positives = 237/540 (43%)

Query:    72 SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDXXXXXXXXXXXXXXXXXXXXXXX 131
             SE ++  + LQ ++ + K QL+S++S + QA Q                           
Sbjct:   432 SEQQTTTNNLQNEISQLKQQLASNQSTESQALQSKITELSQLQSEFEKLQNQLQSKDSEL 491

Query:   132 XXXXARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESE 191
                  +   L +   E  QS   +L++++         L S   ELQ +K+Q E  +E  
Sbjct:   492 LETSKKQSALLEQQSEDSQSKDEKLKSVELNLQQTLQQLQSKDQELQNVKSQLEQQSEDS 551

Query:   192 AAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAK 251
              ++ +  +S  L LQ     L +  S +E  +++  ESK+ + ++  L  +  LQ + ++
Sbjct:   552 ESKDQKLKSVELTLQQTLQQLQDVKSQLEQ-QSEHNESKDEKLKSIELNLQQQLQSKDSE 610

Query:   252 LS-----VEALRAEGMKAIEAYSSIAS--ELERSRTRINLLEG---LVSKLEADTSNAN- 300
             LS     ++ L +E     E  SS +S  + E S  +  LL     L SK E   SN + 
Sbjct:   611 LSSKDEQLKCLESELSSVKEQLSSQSSNTDSELSSVKDQLLSKDSELKSKDE-QLSNKDS 669

Query:   301 --RNLSQNCSGDYD-LGQKIKENQDTMXXXXXXXXXXXXXXX-VGQLRSALEIAETKLN- 355
               +++  +     D L  K +E Q T                 +  + S L+  + +L+ 
Sbjct:   670 QIKSIESDLQSVKDQLSSKDQELQSTKDQLSSKDEQLSNKDTQIKSIESDLQSVKDQLSS 729

Query:   356 -EGQIQSTV-KIKSAFEQLEQIKHQSGLREVELEA---ELQKAKSDIEELKANLMDKETE 410
              + ++QST  ++ S  ++L+  K Q   ++ EL++   +L    S  ++L A    K+TE
Sbjct:   730 KDQELQSTKDQLSSKDQELQSTKDQLSTKDQELQSAKDQLSCQSSTTDQLSA----KDTE 785

Query:   411 LQGISEE--NEGLHMQLDKNLMCQRESQLNNDLRKLAQA---VEDLKANLMDKETELQNI 465
             LQ   ++  ++   +Q  K+ +  ++S+L +   +L+     ++ +K  L  K+++LQ++
Sbjct:   786 LQSTKDQLSSKDSELQSIKDQLSTKDSELQSSKDQLSSKDSELQSIKDQLSSKDSDLQSV 845

Query:   466 SEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARM 525
              ++       +S ++ D  +    L+++ +  +S + E   K   L +   K + + +++
Sbjct:   846 KDQ-------LSSKDSDLQSTKDQLSSKDQELQSVKDELTSKDQELQQITSKQSEQDSKV 898

Query:   526 AEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTG-NNGKCMERSGSIDSNYN 584
             ++  +  ++ N E  +     + + DQ +   +   ++++   NN      S + + N N
Sbjct:   899 SQIQQDLENKNAEFLSVTFEKQTEIDQLKTQIQDLNNIINNNKNNNNNNNNSNTENGNAN 958

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000015455 AN3906 [Emericella nidulans (taxid:162425)]

 Score = 214 (80.4 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
 Identities = 138/602 (22%), Positives = 258/602 (42%)

Query:    18 SPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVID---RRSPRSPVSERKRPSRISEL 74
             S R V +  TT     +++++ +T   P   + K +    + S    +  +    ++SE 
Sbjct:   198 STRPVTKPTTTTTRPTTSTTATRTATRPTTTAAKRLSTAPKTSEEDAIKLQSLQDKLSES 257

Query:    75 ESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDXXXXXXXXXXXXXXXXXXXXXXXXXX 134
             E+ +  L+ +L+ AK +L+     +    +  +                           
Sbjct:   258 EATIESLKTELETAKEKLTLPPQTEGTEAEPNDSTKALQEQHATEISQLVASHEEQLQAL 317

Query:   135 XARAVELQKVSQETDQSCQSELQ-AIQNQHSIDSAALASALNELQQL-KAQFEMVAESEA 192
              A+  E +   +E ++     L+ A Q   S     L++AL+EL++  +AQ E + ESE 
Sbjct:   318 RAQLEEAEAKRKEIEEKSLKALEDASQAAASQGDEKLSAALDELKRSHQAQLEAL-ESEL 376

Query:   193 AQTKNAESAHLE-LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAK 251
             A  K+A +++ E + SLK   IE  S  ++++   +   E+E +A AL  E   +L+   
Sbjct:   377 AAQKSAAASYAEQIDSLK---IELQSKSDSLEAAAK-GFEAE-KASAL-EELRGELQA-- 428

Query:   252 LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDY 311
               +E+L+    +A+ A     +E E +R  I  LE  ++ L++  + A    +Q   G  
Sbjct:   429 -EIESLKQSKDEAVRA-----AE-ESTRQSIAALEDKITSLQSQLTAAESATTQ---GQE 478

Query:   312 DLGQKI--KENQDTMXXXXXXXXXXXXXXXVGQLRSALEI-AETK-LNEGQIQSTVKIKS 367
             +   ++  KEN+                   G+ R+A ++ A+ K L  G   +  K+K+
Sbjct:   479 ETAAQLAAKENE-VSELRQAVDAARAELEQAGE-RAAKDLEAKLKALEAGHEDAIAKLKA 536

Query:   368 AFEQL---EQIKHQSGLREVELEAELQKAK--SDIEELKANL----MDKETELQGISE-E 417
               ++        H S L   +   E   +    ++EEL+A+L     D  +ELQ   + E
Sbjct:   537 QHDEALASAASSHASELANAKAATESSSSAHAQELEELRASLDKVKEDAVSELQATHQAE 596

Query:   418 NEGLHMQLD---KNLMCQR---ESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEM 471
              + L  +LD   ++L   R   E   N    +  Q +E LK  +   E++L    EE + 
Sbjct:   597 LQSLQQRLDDAEQSLQTTRQALEEGANAAQTQALQEIESLKDKVNTLESQLSTGQEEIKA 656

Query:   472 LKLEISKRELDTPNMNSNLAA-EVEA-ARSAEKEALMKLG----LLMEEADKSN-RRAAR 524
             L+ EI  ++     +  NL   E +  A+ AE+E  +K         E A K + ++AA 
Sbjct:   657 LQAEIQAKQEQADTLQQNLVTFETKLKAKDAEQEGEIKAAEERAAAAERALKEHVQKAAA 716

Query:   525 MAEQ-LEAAQSANCEAEAELRRLKVQ-SDQWRKAAEAAASM---LSTGNNGKCMERSGSI 579
             +AE+     ++   +  AEL R+K   S   ++A E   S    L + N+      +G I
Sbjct:   717 LAEEHANTLEALRVDHAAELERVKADASGSLQQALEELQSKYNDLLSKNSDMEASHAGKI 776

Query:   580 DS 581
             ++
Sbjct:   777 EA 778

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSS5	ICR3_ARATH	No assigned EC number	0.5023	0.8988	0.9929	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	623
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-14
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	6e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	5e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
COG1511	780	COG1511, COG1511, Predicted membrane protein [Func	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	6e-04
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	9e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
pfam05701	484	pfam05701, DUF827, Plant protein of unknown functi	0.002
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.003
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.004
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	0.004
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 74.8 bits (184), Expect = 9e-14
 Identities = 74/330 (22%), Positives = 148/330 (44%), Gaps = 3/330 (0%)

Query: 153 QSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNL 212
           + EL+ ++ + +   A L     EL+ LK +   + +      +  E    +L+ LK  L
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725

Query: 213 IETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIA 272
                 +E ++++L E +E   + +    E   +LE  +  +E+L     K  E    + 
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785

Query: 273 SELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEE 332
            + +  +  +  LE  + + E       R L         L Q+I+E ++  E + LEE+
Sbjct: 786 EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE--EIEELEEK 843

Query: 333 LSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQK 392
           L  L+ E+ +L   LE  + +L E +     +++   ++LE+ K +      ELE+EL +
Sbjct: 844 LDELEEELEELEKELEELKEELEELE-AEKEELEDELKELEEEKEELEEELRELESELAE 902

Query: 393 AKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLK 452
            K +IE+L+  L + E +L+ +  E   L  +L++      E++L  ++ +L + +E L 
Sbjct: 903 LKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962

Query: 453 ANLMDKETELQNISEENEMLKLEISKRELD 482
              +    E + + E  E LK +    E  
Sbjct: 963 PVNLRAIEEYEEVEERYEELKSQREDLEEA 992

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 68.9 bits (169), Expect = 4e-12
 Identities = 72/395 (18%), Positives = 157/395 (39%), Gaps = 38/395 (9%)

Query: 67   RPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQ 126
            R   I ELE ++  L+E + + +  L+      ++ +++ E  +K+L  LS ++   +K 
Sbjct: 675  RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 127  LQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEM 186
            L  L A  E     + ++S+E     ++E++ ++ +       LA A  E+++L+AQ E 
Sbjct: 735  LARLEAEVEQLEERIAQLSKE-LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793

Query: 187  VAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQ 246
            + E   A  +  +    EL  L          +E+++ ++  ++      +    E    
Sbjct: 794  LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853

Query: 247  LETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQN 306
            +E+    +E L     +      ++ +E       + LL   + +L  +        S+ 
Sbjct: 854  IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE- 912

Query: 307  CSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIK 366
                                  L  EL  L+ ++ QL   LE  E +++  Q + + +  
Sbjct: 913  ----------------------LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950

Query: 367  SAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD 426
               E+ E ++++    E E    L++ ++ I+EL    +    E + + E  + L  Q +
Sbjct: 951  LTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE 1010

Query: 427  KNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETE 461
                      L      L +A+E+     +D+E  
Sbjct: 1011 ---------DLTEAKETLEEAIEE-----IDREAR 1031

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.0 bits (143), Expect = 7e-09
 Identities = 75/352 (21%), Positives = 138/352 (39%), Gaps = 47/352 (13%)

Query: 69  SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQ 128
             + ELE Q+ +L+   +KA+                AE  + +L  L +KL+E +K+L+
Sbjct: 193 DLLEELEKQLEKLERQAEKAERYQE----------LKAELRELELALLLAKLKELRKELE 242

Query: 129 ELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVA 188
           EL                      + EL  ++ +       L  A  E+++LK++ E + 
Sbjct: 243 EL----------------------EEELSRLEEELEELQEELEEAEKEIEELKSELEELR 280

Query: 189 ESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLE 248
           E      +       E++ L+G     ISL+     +L    E   +     +E +  L+
Sbjct: 281 EELEELQEELLELKEEIEELEGE----ISLLRERLEELENELEELEERLEELKEKIEALK 336

Query: 249 TAKLSVEALRAEGMKAIEAYSSIASELERSR-TRINLLEGLVSKLEADTSNANRNLSQNC 307
                 E L  E  + +        ELE      +  LE L   L  + +     L++  
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAE-- 394

Query: 308 SGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKS 367
                +  +++E +  +E   LEE L  L   +  L+  L+  E +L E Q +   ++  
Sbjct: 395 -----IRNELEELKREIE--SLEERLERLSERLEDLKEELKELEAELEELQTE-LEELNE 446

Query: 368 AFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENE 419
             E+LE+   +   R  ELE EL + + +++ L+  L   E  L  +  E  
Sbjct: 447 ELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 56.6 bits (137), Expect = 3e-08
 Identities = 70/331 (21%), Positives = 140/331 (42%), Gaps = 42/331 (12%)

Query: 84  DLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQK 143
            L++ + +L   +   ++A+++ E+   +L  L  KL+E + ++ EL    E    EL  
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292

Query: 144 VSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHL 203
           ++ E     + + Q ++ + +     L     +L++L+++ + +AE  A   +  E    
Sbjct: 293 LANEI-SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351

Query: 204 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK 263
           EL+SL+  L E  + +E ++++L E +E     ++   +  LQ+                
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA--------------- 396

Query: 264 AIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDT 323
                 S+ +E+ER   R+  LE    +L+ +     + L +                  
Sbjct: 397 ------SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA----------------- 433

Query: 324 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLRE 383
            E K L+ EL  L+ E+ +L+  LE  E  L E + +   + + A +  E+   Q   R 
Sbjct: 434 -ELKELQAELEELEEELEELQEELERLEEALEELR-EELEEAEQALDAAERELAQLQARL 491

Query: 384 VELEAELQKAKSDIEELKANLMDKETELQGI 414
             LE  LQ+      E    L+  ++ L GI
Sbjct: 492 DSLER-LQENLEGFSEGVKALLKNQSGLSGI 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.5 bits (134), Expect = 7e-08
 Identities = 57/322 (17%), Positives = 134/322 (41%), Gaps = 34/322 (10%)

Query: 69   SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQ 128
            +++ +LE ++  L+ +L+  ++ L       ++ ++  E+ K++L AL  +L++ Q +L+
Sbjct: 681  AQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLE 740

Query: 129  ELSASEEARAVELQKVSQETD---------QSCQSELQAIQNQHSIDSAALASALNELQQ 179
            EL    E    EL+++ +  +         +   ++L+    +      AL   L EL++
Sbjct: 741  ELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEE 800

Query: 180  ----LKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQ 235
                 + + + +     +  +  E    E++ L+  + E    ++ ++ +L E ++   +
Sbjct: 801  ELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEE 860

Query: 236  AQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASEL-------ERSRTRINLLEGL 288
             +    E   + E  +  ++ L  E  +  E    + SEL       E+ R R+  LE  
Sbjct: 861  LKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAK 920

Query: 289  VSKLEADTSNANRNLSQNCSGDYDLG-----QKIKENQDTM---------ESKHLEEELS 334
            + +LE +       L +      +       ++++E  + +         E + +EE   
Sbjct: 921  LERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYE 980

Query: 335  SLKSEVGQLRSALEIAETKLNE 356
             LKS+   L  A E     + E
Sbjct: 981  ELKSQREDLEEAKEKLLEVIEE 1002

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 52/230 (22%), Positives = 110/230 (47%), Gaps = 6/230 (2%)

Query: 69  SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQ 128
             +SELE ++  LQ++L    N++S  E  KQ  ++   + ++QL  L ++L+E + +L 
Sbjct: 274 LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333

Query: 129 ELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVA 188
           EL+        +L+++ +E + S ++EL+ ++ +     + L     +L+ L+++   + 
Sbjct: 334 ELAEELAELEEKLEELKEELE-SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392

Query: 189 ESEAAQTKNAESAHLELQSLKGNLIETIS-----LMENMKNQLRESKESETQAQALARET 243
              A+     E     L+ L+             L +  + +L+E +    + +    E 
Sbjct: 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452

Query: 244 LLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE 293
             +LE  + ++E LR E  +A +A  +   EL + + R++ LE L   LE
Sbjct: 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 60/257 (23%), Positives = 121/257 (47%), Gaps = 11/257 (4%)

Query: 315 QKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQ--IQSTVKIKSAFEQL 372
           +++KE ++ +E   L  EL  L+ ++ +LR  +   E ++ E Q  + +     S  EQ 
Sbjct: 246 EELKEAEEELEE--LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303

Query: 373 EQI----KHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKN 428
           +QI          +  ELEA+L++ +S ++EL   L + E +L+ + EE E L  +L++ 
Sbjct: 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363

Query: 429 LMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNS 488
                E  L + L +L + +E L++ +   E ++ +++ E E L+  + + E     +  
Sbjct: 364 EAELEE--LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421

Query: 489 NLAAEVEAARSAEKEAL-MKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLK 547
            +   ++    AE + L  +L  L EE ++      R+ E LE  +    EAE  L   +
Sbjct: 422 EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481

Query: 548 VQSDQWRKAAEAAASML 564
            +  Q +   ++   + 
Sbjct: 482 RELAQLQARLDSLERLQ 498

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 111/543 (20%), Positives = 225/543 (41%), Gaps = 75/543 (13%)

Query: 69  SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAED-----SKKQLLALSSKLQES 123
           S++++LE Q++ L  ++++ + +L   E  +++ QQ+ E+      + +L  L ++L+E 
Sbjct: 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEL 445

Query: 124 QKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQ 183
           +++L+EL    E     L+++ +E +++ +  L A + +     A L + L+ L++L+  
Sbjct: 446 EEELEELQEELERLEEALEELREELEEA-EQALDAAEREL----AQLQARLDSLERLQEN 500

Query: 184 FEMVAESEAAQTKNAESAHLELQSLKGNLIET---------ISLMENMKNQLRESKESET 234
            E  +E   A  KN       L  L   LI            +L   ++  + E+  +  
Sbjct: 501 LEGFSEGVKALLKNQSGLSGILGVL-SELISVDEGYEAAIEAALGGRLQAVVVENLNAAK 559

Query: 235 QAQA------LARETLLQLETAKLS-VEALRAEGMKAIEAYSSIASELERSRTRI-NLLE 286
           +A A      L R T L L++ K + ++    E +K IE +  +A +L +   ++   L 
Sbjct: 560 KAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALS 619

Query: 287 GLVSKLE--ADTSNANRNLSQNCSG------DYDL--------GQKIKENQDTM----ES 326
            L+  +    D  NA     +   G      D DL        G   K N   +    E 
Sbjct: 620 YLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREI 679

Query: 327 KHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVEL 386
           + LEE++  L+ ++ +L  AL     +L E        ++   EQL +   +   +   L
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEE--------LEEELEQLRKELEELSRQISAL 731

Query: 387 EAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQ 446
             +L + ++++E+L+  +     EL  +  E E L  +L++               +   
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA-------------EEELA 778

Query: 447 AVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALM 506
             E     L   E +++ + EE + L+  + +   +   +N   A   E   S E+    
Sbjct: 779 EAEAEIEEL---EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835

Query: 507 K---LGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASM 563
               L  L E+ ++ +     +A ++E  +    E E+EL  L  +     +A     S 
Sbjct: 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895

Query: 564 LST 566
           L  
Sbjct: 896 LEE 898

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 5e-07
 Identities = 75/331 (22%), Positives = 136/331 (41%), Gaps = 41/331 (12%)

Query: 223 KNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEA------YSSIASELE 276
           + +L  ++E+  + + L  E   QLE  KL  +A +AE  + ++A       + + ++L+
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLE--KLERQAEKAERYQELKAELRELELALLLAKLK 235

Query: 277 RSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSL 336
             R  +  LE  +S+LE +       L +                        E+E+  L
Sbjct: 236 ELRKELEELEEELSRLEEELEELQEELEE-----------------------AEKEIEEL 272

Query: 337 KSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSD 396
           KSE+ +LR  LE  + +L E + +   +++     L +   +      ELE  L++ K  
Sbjct: 273 KSELEELREELEELQEELLELKEEIE-ELEGEISLLRERLEELENELEELEERLEELKEK 331

Query: 397 IEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLM 456
           IE LK  L ++ET L+ + +    L    +         +L   L  L + +E+L   L 
Sbjct: 332 IEALKEELEERETLLEELEQLLAELEEAKE---------ELEEKLSALLEELEELFEALR 382

Query: 457 DKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEAD 516
           ++  EL+    E      E+ +           L+  +E  +   KE   +L  L  E +
Sbjct: 383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELE 442

Query: 517 KSNRRAARMAEQLEAAQSANCEAEAELRRLK 547
           + N     + EQLE  +    E E EL  L+
Sbjct: 443 ELNEELEELEEQLEELRDRLKELERELAELQ 473

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.0 bits (125), Expect = 9e-07
 Identities = 76/315 (24%), Positives = 138/315 (43%), Gaps = 32/315 (10%)

Query: 248 ETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNC 307
           E A+L     R EG+K     SS+ SEL R   R++ L   +S          + + Q  
Sbjct: 672 EPAELQRLRERLEGLKREL--SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 308 SGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKS 367
             +  L ++++E ++ + S  LE+E+ ++KSE+ +L + +E  E  L+        K++ 
Sbjct: 730 QEEEKLKERLEELEEDLSS--LEQEIENVKSELKELEARIEELEEDLH--------KLEE 779

Query: 368 AFEQLEQIKHQSGLREV-----ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLH 422
           A   LE     S + E+     +LE E+ + ++ + E++  L     E + + +E + L 
Sbjct: 780 ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839

Query: 423 MQLD-----KNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477
            Q          + +    LN    +L + +E+L+A L D E+ L ++ +E + L+ ++ 
Sbjct: 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899

Query: 478 KRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQS--- 534
           + E         L A++E  R    E   KL  L EE  +         E  E   S   
Sbjct: 900 ELE----RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED 955

Query: 535 --ANCEA-EAELRRL 546
             A  +  E E+R L
Sbjct: 956 VQAELQRVEEEIRAL 970

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 70/300 (23%), Positives = 129/300 (43%), Gaps = 30/300 (10%)

Query: 251 KLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGD 310
           K S  A + E  +  E  + + ++LE+    +  L+  +  LE       R L +     
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE----- 713

Query: 311 YDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFE 370
                + +  +   E   LEEEL  L+S        LE    +L E   +   +++   E
Sbjct: 714 ----LERQLEELKRELAALEEELEQLQSR----LEELEEELEELEEELEELQERLEELEE 765

Query: 371 QLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLM 430
           +LE ++        +L+ E+++ +   + L+  L + E EL+      + L  +L+    
Sbjct: 766 ELESLEEA----LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE- 820

Query: 431 CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNL 490
            QR  +L  ++ +L + +E+L+  L + E EL+ + +E E LK E+ + E          
Sbjct: 821 -QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE---------- 869

Query: 491 AAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQS 550
            AE E      KE   +   L EE  +     A + E++E  +    E EA+L RL+V+ 
Sbjct: 870 -AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVEL 928

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 62/307 (20%), Positives = 131/307 (42%), Gaps = 20/307 (6%)

Query: 70  RISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQE 129
            + ELE ++SRL+E+L++ + +L  +E   ++ + + E+ +++L  L  +L E +++++E
Sbjct: 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299

Query: 130 LSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALN---ELQQLKAQFEM 186
           L   E +   E  +  +   +  +  L+ ++ +       L        EL+QL A+ E 
Sbjct: 300 LEG-EISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE 358

Query: 187 VAESEAAQTKNAESAHLEL-QSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 245
             E    +         EL ++L+  L E  + +  ++N+L E K      +        
Sbjct: 359 AKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSE 418

Query: 246 QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 305
           +LE  K  ++ L AE          + +ELE     +  LE  + +L        R L++
Sbjct: 419 RLEDLKEELKELEAE-------LEELQTELEELNEELEELEEQLEELRDRLKELERELAE 471

Query: 306 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNE--GQIQSTV 363
                  L +++   +         + L + +     +R+ LE  E+ L    G +   +
Sbjct: 472 LQEELQRLEKELSSLEAR------LDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELI 525

Query: 364 KIKSAFE 370
           K+K  +E
Sbjct: 526 KVKEKYE 532

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 66/367 (17%), Positives = 160/367 (43%), Gaps = 22/367 (5%)

Query: 62   VSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQ 121
             + R          +++ RL+E L+  K +LSS +S  ++ +   ++  ++L   S K+ 
Sbjct: 660  RAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719

Query: 122  ESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLK 181
            E +K++++L   EE +  E  +  +E   S + E++ ++++       L + + EL++  
Sbjct: 720  EIEKEIEQLEQ-EEEKLKERLEELEEDLSSLEQEIENVKSE----LKELEARIEELEEDL 774

Query: 182  AQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALAR 241
             + E        + + + S   E+Q+    L E +S +E    ++ +     T  +    
Sbjct: 775  HKLE--EALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832

Query: 242  ETLLQLETAKLSVEALRAEGMKAIEA----YSSIASELERSRTRINLLEGLVSKLEADTS 297
            + + +L+  ++ ++       K IE        +  ELE     +  LE  +  L+ +  
Sbjct: 833  KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERD 892

Query: 298  NANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQL----RSALEIAETK 353
                 L +      +L  +I++ +  +    L+ +L +L+ E+ ++        EI E +
Sbjct: 893  ELEAQLRELERKIEELEAQIEKKRKRL--SELKAKLEALEEELSEIEDPKGEDEEIPEEE 950

Query: 354  LNEGQIQSTV-KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQ 412
            L+   +Q+ + +++     LE +     +  ++   E+ K   +++E +A L ++   + 
Sbjct: 951  LSLEDVQAELQRVEEEIRALEPVN----MLAIQEYEEVLKRLDELKEKRAKLEEERKAIL 1006

Query: 413  GISEENE 419
               EE E
Sbjct: 1007 ERIEEYE 1013

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 45/211 (21%), Positives = 96/211 (45%), Gaps = 5/211 (2%)

Query: 358 QIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEE 417
             +S++  K   ++LE+   +   +  +LE EL+  K+++  L+  L +   +L+ +  +
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ 717

Query: 418 NEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 477
            E L  +L      +   QL + L +L + +E+L+  L + +  L+ + EE E L+  ++
Sbjct: 718 LEELKRELAALE--EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775

Query: 478 KRELDTPNMNSNLAAEVEAARSAEKEALM---KLGLLMEEADKSNRRAARMAEQLEAAQS 534
           K + +   +     A  E     E+E      +L  L  E +   +R  R+ +++E  + 
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835

Query: 535 ANCEAEAELRRLKVQSDQWRKAAEAAASMLS 565
              E E +L  L+ + ++  K  E     L 
Sbjct: 836 EIEELEEKLDELEEELEELEKELEELKEELE 866

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 64/299 (21%), Positives = 135/299 (45%), Gaps = 20/299 (6%)

Query: 64  ERKRPSRISELESQVSRLQE-----DLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSS 118
           + ++  R  EL++++  L+       LK+ + +L   E    + +++ E+ +++L     
Sbjct: 208 QAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEK 267

Query: 119 KLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQ 178
           +++E + +L+EL    E    EL ++ +E  +  + E+  ++ +       L + L EL+
Sbjct: 268 EIEELKSELEELREELEELQEELLELKEEI-EELEGEISLLRERLEE----LENELEELE 322

Query: 179 QLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQA-Q 237
           +   + +   E+   + +  E+   EL+ L   L E    +E   + L E  E   +A +
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR 382

Query: 238 ALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS 297
               E   +L   +  +E L+ E         S+   LER   R+  L+  + +LEA+  
Sbjct: 383 EELAELEAELAEIRNELEELKRE-------IESLEERLERLSERLEDLKEELKELEAELE 435

Query: 298 NANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNE 356
                L +      +L ++++E +D    K LE EL+ L+ E+ +L   L   E +L+ 
Sbjct: 436 ELQTELEELNEELEELEEQLEELRD--RLKELERELAELQEELQRLEKELSSLEARLDR 492

Length = 1163

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 108/533 (20%), Positives = 207/533 (38%), Gaps = 75/533 (14%)

Query: 70  RISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQL-Q 128
              +L S   RLQ    +           +++ Q+     ++QL  L  +L+E++ +L Q
Sbjct: 254 DFEQLLSLELRLQHLHGELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQ 313

Query: 129 ELSASEEARAVELQKVSQETDQSCQSELQAIQNQH----SIDSAALASALNELQQLKAQF 184
           ELSA+    A            + +SEL+ +++Q       D   L + L++L  ++++ 
Sbjct: 314 ELSAANAKLA------------ADRSELELLEDQKGAFEDADIEQLQADLDQLPSIRSEL 361

Query: 185 EMVAESEAAQTKNAESAHLELQSLKGNL-IETISLMENMKNQLRESKESETQAQALARET 243
           E V     A T   +    + + LK  +  +    +E    +L   +E + + +A   E 
Sbjct: 362 EEVEARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEED 421

Query: 244 LLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL 303
           L  LE+       LR +       ++    ELE    R+            D++ A    
Sbjct: 422 LQALES------QLRQQLEAGKLEFNEEEYELELRLGRLKQR--------LDSATATPEE 467

Query: 304 SQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTV 363
            +    + +  +K +E Q+       E  +  L+SE+ QLR   + A   L   + +  +
Sbjct: 468 LEQLEINDEALEKAQEEQEQ-----AEANVEQLQSELRQLRKRRDEALEALQRAE-RRLL 521

Query: 364 KIKSAFEQLE-QIKHQSGLREVELEAELQKAKSDIEELKANLMDKE----TELQGISEEN 418
           +++ A ++LE Q+  Q+G     L   L+      EE    ++  E    T+L     E 
Sbjct: 522 QLRQALDELELQLSPQAG----SLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEG 577

Query: 419 E------GLHM---QLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEEN 469
                  G+ +   +LD       E++L   L++  +A++   A     E +L   + E 
Sbjct: 578 SDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAEL 637

Query: 470 EMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARM-AEQ 528
           E  K                       AR+A K+A + L  L  E      +     AE+
Sbjct: 638 EEQK------------------RAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAER 679

Query: 529 LEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDS 581
            + A++   + +A+L++L  Q   + +A +     L T    K     G +D+
Sbjct: 680 KQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDN 732

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 84/494 (17%), Positives = 188/494 (38%), Gaps = 41/494 (8%)

Query: 69  SRISELESQVSRLQEDLKKAKNQLSSSESWKQQA--QQDAEDSKKQLLALSSKLQESQKQ 126
             + ELE ++ RL+E  ++ +      E  +      ++  +  K L     KL+E  ++
Sbjct: 281 RLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEK 340

Query: 127 LQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEM 186
           L+           EL K+ +E  +  +  L+ ++ +       L      +Q+LK +   
Sbjct: 341 LESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAE 400

Query: 187 VAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALAR----- 241
           ++ +     +  E    EL+ L+  L E    ++ ++ Q+ + +  E     LA      
Sbjct: 401 LSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKC 460

Query: 242 ----------ETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSK 291
                          LE  +L +E L  E +   +  + +  E+E     +  LE  + +
Sbjct: 461 PVCGQELPEEHEKELLELYELELEELEEE-LSREKEEAELREEIEELEKELRELEEELIE 519

Query: 292 LEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAE 351
           L          L +      +L ++++E ++ ++ + L+EEL  L+  + +L+  LE   
Sbjct: 520 LLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELR 579

Query: 352 TKLNEGQIQSTVK-----IKSAFEQLEQIKHQ---------SGLREVELEAELQKAKSDI 397
                 +    ++     +K   ++LE+   Q             E ELE   ++ +S++
Sbjct: 580 LLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESEL 639

Query: 398 EELKANLMDKETELQGISE-------ENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVED 450
           E+L      +E     + E           +  +L +    ++  +   +L +L + +E 
Sbjct: 640 EKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQ 699

Query: 451 LKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAA--EVEAARSAEKEALMKL 508
           L+  L +   +L  I +  E L+   ++ E     +     A   +E  R    +A ++ 
Sbjct: 700 LREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKLGKAGLRA 759

Query: 509 GLLMEEADKSNRRA 522
            +L     +    A
Sbjct: 760 DILRNLLAQIEAEA 773

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 58/241 (24%), Positives = 110/241 (45%), Gaps = 20/241 (8%)

Query: 332 ELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQ 391
           EL  L+ E+ +L + LE  E +L          +K+    LE +  +   +  ELE +L+
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKS--------LKNELRSLEDLLEELRRQLEELERQLE 719

Query: 392 KAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDL 451
           + K ++  L+  L   ++ L+ + EE E L  +L++  + +R  +L  +L  L +A+  L
Sbjct: 720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEE--LQERLEELEEELESLEEALAKL 777

Query: 452 KANLMDKETELQNISEENEMLKLEISKRELDTPNMNS----------NLAAEVEAARSAE 501
           K  + + E + Q + EE E L+ E+ + E     +             L  E+E      
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837

Query: 502 KEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAA 561
           +E   KL  L EE ++  +    + E+LE  ++   E E EL+ L+ + ++  +      
Sbjct: 838 EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897

Query: 562 S 562
           S
Sbjct: 898 S 898

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 101/556 (18%), Positives = 213/556 (38%), Gaps = 87/556 (15%)

Query: 69  SRISELESQVSRLQEDLKKAKNQLSS-----SESWKQQAQQDAEDSKKQLLALSSKLQES 123
           + I  LE+++ RL++  ++ + ++        E+  ++ Q + E+ +++L  L  +L+  
Sbjct: 400 NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459

Query: 124 QKQLQELSASEEARAVELQKVSQETDQ--SCQSELQAIQNQHSIDSAALASALNELQQLK 181
           ++ L+EL    E     L    +E  Q  +    L+ +Q      S  + + L     L 
Sbjct: 460 EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519

Query: 182 AQFEMVAES-------------------EAAQTKNAESAHLELQSLKGNLIETISLME-- 220
               +++E                    +A   +N  +A   +  LK N +  ++ +   
Sbjct: 520 GILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLD 579

Query: 221 -NMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE--- 276
                +++ +     +           L      +       +  +     +  +L+   
Sbjct: 580 SIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA----LSYLLGGVLVVDDLDNAL 635

Query: 277 ------RSRTRINLLEG-------LVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDT 323
                 R   RI  L+G       +++   A T+++     +      +L +KI+E ++ 
Sbjct: 636 ELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIE---ELEEKIEELEEK 692

Query: 324 MESKH-----LEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQ 378
           +         L +EL  L+ E+ QLR  LE    +++  +     ++++  EQLE+   Q
Sbjct: 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD-LARLEAEVEQLEERIAQ 751

Query: 379 SGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRE---- 434
                 ELEAE+++ +  +EE +  L + E E++ +  + E L  +L        E    
Sbjct: 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811

Query: 435 -SQLNNDLRKLAQAVEDLKANLMDKETELQNI-------SEENEMLKLEISKRELDTPNM 486
            + LN +   L + +E L+  +   E  L+++       SE+ E L  EI + E     +
Sbjct: 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871

Query: 487 NSNLA----------AEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSAN 536
            S L             +   RS        L  L EE  +   + + +  +LE  +   
Sbjct: 872 ESELEALLNERASLEEALALLRSE-------LEELSEELRELESKRSELRRELEELREKL 924

Query: 537 CEAEAELRRLKVQSDQ 552
            + E  L  L+V+ D 
Sbjct: 925 AQLELRLEGLEVRIDN 940

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 97/518 (18%), Positives = 199/518 (38%), Gaps = 37/518 (7%)

Query: 69  SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQ 128
            R+ EL++++  ++    +A           ++  ++ E+  ++L  L  +++E +++L+
Sbjct: 249 ERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308

Query: 129 ELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVA 188
            L A  E     L+K+        +  L+ ++ +       L S L EL + K +   + 
Sbjct: 309 GLRALLEELEELLEKLKSL-----EERLEKLEEKL----EKLESELEELAEEKNELAKLL 359

Query: 189 ESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLE 248
           E    + +       EL+      +E +  +E    +L+E     + A    +E L +LE
Sbjct: 360 EERLKELEERLE---ELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELE 416

Query: 249 TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGL-----VSKLEADTSNANRNL 303
                +E    E  + I+      ++LE     I  L G      V   E    +    L
Sbjct: 417 KELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELL 476

Query: 304 SQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTV 363
                   +L +++   ++  E +   EEL     E+ +    L   E  L E   +   
Sbjct: 477 ELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLE 536

Query: 364 KIKSAFEQLEQIKHQSGLREVE-----LEAELQKAKSDIEELK---------ANLMDKET 409
           K+++  E+LE++K +  L++++     LE  LQ+ K  +EEL+           L ++  
Sbjct: 537 KLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLK 596

Query: 410 ELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEEN 469
           EL+   +E E    QL++ L     S+  N+L +  + +E     L            + 
Sbjct: 597 ELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKL--NLQAELEELLQA 654

Query: 470 EMLKLEISKRELDTPNMNSNLAAEVEAA----RSAEKEALMKLGLLMEEADKSNRRAARM 525
            + +LE    EL+          E E          ++   +L  L EE ++  ++   +
Sbjct: 655 ALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEI 714

Query: 526 AEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASM 563
            + +E  +S   E E   + L+          E    +
Sbjct: 715 EQLIEELESRKAELEELKKELEKLEKALELLEELREKL 752

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 61/251 (24%), Positives = 112/251 (44%), Gaps = 14/251 (5%)

Query: 329 LEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEA 388
           L+ ELSSL+SE+ ++ + L+    +L++   +   +I+   EQLEQ + +   R  ELE 
Sbjct: 686 LKRELSSLQSELRRIENRLDELSQELSDAS-RKIGEIEKEIEQLEQEEEKLKERLEELEE 744

Query: 389 ELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDK---NLMCQRESQLNNDLRKLA 445
           +L   + +IE +K+ L + E  ++ + E+   L   L+     L   R  ++  +L KL 
Sbjct: 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLE 804

Query: 446 QAVEDLKANLMDKETELQNISEENEMLKLEI----SKRELDTPNMNS------NLAAEVE 495
           + V  ++A L + E +L  ++ E E L+ EI     +R      + S      NL  + E
Sbjct: 805 EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864

Query: 496 AARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRK 555
                 +E    L  L        +    +  QL   +    E EA++ + + +  + + 
Sbjct: 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924

Query: 556 AAEAAASMLST 566
             EA    LS 
Sbjct: 925 KLEALEEELSE 935

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 46.4 bits (111), Expect = 5e-05
 Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 43/244 (17%)

Query: 72  SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELS 131
             LE++   +Q+DL++    L        + +++ E  K+QL    +KL+++Q +L+ L 
Sbjct: 52  KLLEAEDKLVQQDLEQTLALLDK----IDRQKEETEQLKQQLAQAPAKLRQAQAELEALK 107

Query: 132 ASEEARAVE-LQKVSQETDQS----CQSELQAIQNQ-HSIDS-------------AALAS 172
              +    E L  +S    +S       +LQ  QN     +S             AAL +
Sbjct: 108 DDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYA 167

Query: 173 ALNELQQLKAQFEMVAESEAA-----QTK-NAESAHLELQ------SLKGN--LIETISL 218
               LQQ++   +       A     +    AE A L  Q      SL+GN  L + +  
Sbjct: 168 NSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQK 227

Query: 219 MENMKNQLRESKESETQA-QALARETLLQL--ETAKLSVEALRAEGMKAIEAYSSIASEL 275
             +      +  E + Q  Q       L L  +T +   EA   +    I+A   +A EL
Sbjct: 228 QRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQ---EAQSQDEAARIQANPLVAQEL 284

Query: 276 ERSR 279
           E + 
Sbjct: 285 EINL 288

Length = 1113

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 47/216 (21%), Positives = 99/216 (45%), Gaps = 16/216 (7%)

Query: 370 EQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLH-----MQ 424
           E+L++   ++     EL AELQ+ +  +EEL+  + + E E++ + +E   L      ++
Sbjct: 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301

Query: 425 LDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTP 484
             K ++ +R + L   L +L   +E+L++ L +   EL  + E+ E LK E+        
Sbjct: 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL-------- 353

Query: 485 NMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELR 544
               +L AE+E   +  +E   +L  L E+ +    + A++  Q+ +  +     EA L 
Sbjct: 354 ---ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410

Query: 545 RLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSID 580
           RL+ + ++ ++  E     L      +       ++
Sbjct: 411 RLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 93/499 (18%), Positives = 183/499 (36%), Gaps = 35/499 (7%)

Query: 72  SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELS 131
            EL+      +   ++ + +L       ++   + E+ K++L  L ++L E +    E  
Sbjct: 210 EELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEAL 269

Query: 132 ASEEARAVELQKVSQETDQS------CQSELQAIQNQHSIDSAALASALNELQQLKAQFE 185
              E    EL+++ +E ++        + E++ ++ +     A L      L++LK+  E
Sbjct: 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEE 329

Query: 186 MV--AESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARET 243
            +   E +  + ++      E ++    L+E        + +  E +  +   +    E 
Sbjct: 330 RLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEE 389

Query: 244 LLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL 303
            +Q    +L    L A   +  E    +  ELE     +  LE  + KLE        N 
Sbjct: 390 AIQELKEEL--AELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQ-----INQ 442

Query: 304 SQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTV 363
            ++            E       +  EE    L              E +  E ++    
Sbjct: 443 LESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYEL--------ELEELEEELSREK 494

Query: 364 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHM 423
           +     E++E+++ +      ELE EL +     E LK  L +K  +L+ + EE E L  
Sbjct: 495 EEAELREEIEELEKE----LRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE 550

Query: 424 QLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKR---E 480
           +L      Q+  +    L    Q +++L   L    T  + + E  E LK    K    E
Sbjct: 551 KLQL----QQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELE 606

Query: 481 LDTPNMNSNL-AAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEA 539
                +   L + E+  A +  +EA  +L   +E+ +        +   LE  +    E 
Sbjct: 607 ERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEEL 666

Query: 540 EAELRRLKVQSDQWRKAAE 558
           EAE+RR   + +   +  E
Sbjct: 667 EAEIRRELQRIENEEQLEE 685

Length = 908

>gnl|CDD|224428 COG1511, COG1511, Predicted membrane protein [Function unknown]

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 63/401 (15%), Positives = 120/401 (29%), Gaps = 30/401 (7%)

Query: 79  SRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARA 138
            +L++   +A N               +      L AL+S L      L +L +     A
Sbjct: 188 EKLKDGTDEASNGNKKLSDLLNTLNNSSATFSDGLNALTSGLTTLTDGLNQLDSGLGTLA 247

Query: 139 VELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNA 198
             + ++ Q   +     +    +  S  ++ +      + QL                +A
Sbjct: 248 AGIGELKQ-GAEQLNEGIGEFSSGLSELNSGVQDLAAGVPQLNQGI------------SA 294

Query: 199 ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALR 258
            +A L L    G+   ++        Q  + K S +   A    + LQ   A      L 
Sbjct: 295 LAAGLSLPDSLGDQFSSLQEALTQIAQGLKQKTSSSLEAAQGSLSSLQSMLALSKSLDLT 354

Query: 259 AEGM-KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKI 317
           AEG              L+ S+  +  L  L+S      S     L Q  +       K+
Sbjct: 355 AEGATVDALGAPDGVQWLDESQKTLATLSELLSTGIDGVSEGLDALEQASAQLAKSLAKL 414

Query: 318 KENQDTME--SKHLEEELSSLKSEVGQLRSA--LEIAETKLNEGQIQSTVKIKSAFEQLE 373
           K     +      L    S +   +        L      L +G       +  A +   
Sbjct: 415 KTAVAQIAASIAQLLPGASEVLKTLKSKGLDKLLNQLNGALAKGSNALVQGLSDANDSFR 474

Query: 374 QIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQR 433
            I         +L+A L        +L +          G     +GL      + +   
Sbjct: 475 SIT------SAQLKAGLNTLADGSNDLSSLGPGLGQLADGSKLLADGL------SELNTG 522

Query: 434 ESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKL 474
            +QL + L +L+  + +L  +L D   +L   ++ ++    
Sbjct: 523 SAQLRDGLGELSDGLTELADSLQDAADQLSLANDSDKQASF 563

Length = 780

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 69/367 (18%), Positives = 143/367 (38%), Gaps = 68/367 (18%)

Query: 71  ISELESQVSRLQEDLKKA------KNQLSSSESW-----KQQAQQDAEDSKKQLLALSSK 119
           I E   Q+ RL+ + +KA        +    E +     K+  ++  E  ++QL +L  +
Sbjct: 193 IDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEE 252

Query: 120 LQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQ 179
           L++  +++ EL    E     L++++++     + E   ++                   
Sbjct: 253 LEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVK------------------- 293

Query: 180 LKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQAL 239
                           +       E+ SL+ ++ E    +E+ + +L        + +A 
Sbjct: 294 ----------------EKIGELEAEIASLERSIAEKERELEDAEERLA-------KLEAE 330

Query: 240 ARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNA 299
             + L ++E  +  +E  R    K  E Y+ +  ELE  R  +  ++   ++   +  + 
Sbjct: 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390

Query: 300 NRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI 359
              L         L ++I E +   E   L+EEL  L  E+  L +A+   E K+NE + 
Sbjct: 391 REKLE-------KLKREINELKR--ELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441

Query: 360 QSTVK---IKSAFEQLEQIKHQSGLREVE---LEAELQKAKSDIEELKANLMDKETELQG 413
           +   K   IK    +LEQ+       E E   L+ E  + + ++ +L+  L + E + + 
Sbjct: 442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501

Query: 414 ISEENEG 420
             E   G
Sbjct: 502 SEERVRG 508

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 33/229 (14%), Positives = 80/229 (34%), Gaps = 13/229 (5%)

Query: 72  SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQE-L 130
           ++LE Q+  L+ ++   + QL  +    ++ ++   D   +L AL  + +E +++L E L
Sbjct: 62  AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQL 121

Query: 131 SASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAES 190
           +A + +       +    + + +S   AI                   +     +   + 
Sbjct: 122 AALQRSGRNPPPALLVSPEDAQRSVRLAIYYGA---------LNPARAERIDALKATLKQ 172

Query: 191 EAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETA 250
            AA      +   EL +L        + +     + R+   ++  ++  A +   +LE  
Sbjct: 173 LAAVRAEIAAEQAELTTLLSEQRAQQAKLA-QLLEERKKTLAQLNSELSADQK--KLEEL 229

Query: 251 KLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNA 299
           + +   L+ E   A  A +        +           +K   +T   
Sbjct: 230 RANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKP 278

Length = 420

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 42.0 bits (99), Expect = 9e-04
 Identities = 37/194 (19%), Positives = 75/194 (38%), Gaps = 16/194 (8%)

Query: 68  PSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQL 127
            SR   L ++ ++L+  L+  +  ++S      + Q++AE + ++    +  +Q+     
Sbjct: 14  QSRRELLTAESAQLEAALQLLQEAVNS------KRQEEAEPAAEEAELQAELIQQELAIN 67

Query: 128 QELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSID--SAALASALNE----LQQLK 181
            +LS +   +   L  ++ +  Q     LQ +Q+  +I    A L  +L      LQQL 
Sbjct: 68  DQLSQALNQQTERLNALASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLG 127

Query: 182 AQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQ-ALA 240
              E     E  +          LQ+ K  +       E +  ++R+  +     +  L 
Sbjct: 128 PLPEAGQPQEQFE---VTQERDALQAEKAYINALEGQAEQLTAEVRDILDQILDTRRELL 184

Query: 241 RETLLQLETAKLSV 254
              L Q E   L +
Sbjct: 185 NSLLSQREAISLQL 198

Length = 835

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 61/398 (15%), Positives = 133/398 (33%), Gaps = 81/398 (20%)

Query: 73  ELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSA 132
           EL  ++ + +E L+ A  +   +E    QA  + E+ K+      + L++++  LQ L  
Sbjct: 604 ELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQN 663

Query: 133 SEEARAVELQKVSQETDQSCQSELQ-------AIQNQHSIDSAALASALNELQQLKAQFE 185
            +++   +L+    E  Q  +++L+        +  Q      AL     EL+  +    
Sbjct: 664 EQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKW 723

Query: 186 MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 245
            V E E                              + NQL +   +   A+  A+  L 
Sbjct: 724 QVVEGE------------------------------LDNQLAQLSAAIEAARTQAKARLK 753

Query: 246 QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 305
           +L+             + +++   +   EL+R                         L  
Sbjct: 754 ELKKQ-------YDRELASLDVDPNTVKELKRQI---------------------EELET 785

Query: 306 NCSGDYDLGQKIKENQDTMES-----KHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQ 360
                     +++E +  M+        L EE  +L  ++ +L S+ E  + +L      
Sbjct: 786 TIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQELTRLIKD 845

Query: 361 STVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEG 420
           + ++ K    +LEQ +     +  +L+  L+  + ++ +L                E   
Sbjct: 846 TKLRRK----KLEQERKALEKQLDQLDELLRGLRDEMRQLAELKEPANAN----QAEGSI 897

Query: 421 LHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDK 458
                      ++  +L+ DL+K    +E     + D 
Sbjct: 898 SERLDQLEEFKRKRKRLSGDLKK---FLERFDGVIKDH 932

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 0.002
 Identities = 95/497 (19%), Positives = 198/497 (39%), Gaps = 40/497 (8%)

Query: 64   ERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQES 123
            + K  +R  E   +     E+ KK +   +      ++A++ AED++K   A  ++  E 
Sbjct: 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARK---AEEARKAED 1138

Query: 124  QKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQ 183
             ++ +E   +E+A+ VE+ + +++  ++   E +  ++    ++A  A  + + ++L+  
Sbjct: 1139 ARKAEEARKAEDAKRVEIARKAEDARKA--EEARKAEDAKKAEAARKAEEVRKAEELRKA 1196

Query: 184  FEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARET 243
             +      A + +    A    ++      E +   E  K    E+K++E +      E 
Sbjct: 1197 EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERN---NEE 1253

Query: 244  LLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL 303
            + + E A+++  A R   +KA EA    A EL+++            K +AD +      
Sbjct: 1254 IRKFEEARMAHFARRQAAIKAEEARK--ADELKKAE----------EKKKADEAKKAEEK 1301

Query: 304  SQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTV 363
                       +K  E +   E     +E    K +  + +   + A+ K  E +  +  
Sbjct: 1302 -----------KKADEAKKKAEEAKKADEA---KKKAEEAKKKADAAKKKAEEAKKAAEA 1347

Query: 364  KIKSAFEQLEQIKHQSGLREV-ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLH 422
                A    ++ +      E  E + E  K K+D  + KA    K  E +  +EE++   
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407

Query: 423  MQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELD 482
             +L K        +  ++ +K A+  +  KA+   K+ E    ++E +    E  K E  
Sbjct: 1408 DELKKA---AAAKKKADEAKKKAEEKK--KADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462

Query: 483  TPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAE 542
                     A+    ++ E +   +     EEA K    A + AE  + A  A    EA+
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522

Query: 543  LRRLKVQSDQWRKAAEA 559
                  ++++ +KA EA
Sbjct: 1523 KADEAKKAEEAKKADEA 1539

Length = 2084

>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827)

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 103/473 (21%), Positives = 197/473 (41%), Gaps = 38/473 (8%)

Query: 66  KRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQK 125
           +R  R+   E+++   QE+  K K +L  +E  K Q  ++ E +K+ +  L  KL++++K
Sbjct: 26  QRSERVLVKETELMLAQEEANKLKKELEVAEKEKLQVLKELESTKRTVEDLKLKLEKAEK 85

Query: 126 QLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFE 185
                   E+    + +      ++  Q   +    ++   +A L S   EL++++ +++
Sbjct: 86  -------EEQQAKQDSELAKLRAEELEQGIQELEVERYITATAELDSVKEELRKIRQEYD 138

Query: 186 MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 245
            + E   A  K AE A    +            +E +  ++   KES  +A A   E   
Sbjct: 139 ALVEERDAALKRAEEAICASK-------VNEKKVEELTKEIIAMKESLERAHAAHLEAEE 191

Query: 246 QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 305
           +   A L  +  R    K ++      +E E  R + +L      +  A+ S    +L +
Sbjct: 192 ERIGAALEKDQDRETYEKELK-----EAEKELERLKQDLDPEKDLEKLAEASAELESLQK 246

Query: 306 NCSGDYDLGQKIKE-NQDTMESKHLEEELSSLKSEVGQLRSALE-----IAETKLNEGQI 359
             S    +   +KE  +     +   EE  SL++ V  L+  LE     + E +  EG+ 
Sbjct: 247 EISIMASVASVLKELEEAKANLEKAAEEEKSLRNLVESLKQELEEEKKELEELREKEGEA 306

Query: 360 QSTVKIKSAFEQLEQIKHQSGLRE--VELEAELQKAKSDIEELKANLMDKETELQGISEE 417
           +       A     + + +S  RE  VE+  +LQ+A S+ EE +        EL+ + EE
Sbjct: 307 EEAASSLEAELNRTKSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEE 366

Query: 418 NEGLHMQLDKNLMCQRESQLNNDLRKLAQ--AVEDLKANLMDKETELQNISEENEMLKLE 475
            E     L+   +    +    +  K A+  A+ ++KA L + E   +  S     L LE
Sbjct: 367 AEQTKAALETAELRLEAALKEAEAAKAAEALALAEIKA-LQESEESAKADSPRKITLSLE 425

Query: 476 ----ISKRELDTPNM----NSNLAAEVEAARSAEKEALMKLGLLMEEADKSNR 520
               +SK+  +   +     +   A+VE A+ +E E+L KL    +E ++   
Sbjct: 426 EYEELSKKAEEAEELAEKKVAAALAQVEEAKESENESLKKLEEASKEIEEKKA 478

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 60/267 (22%), Positives = 106/267 (39%), Gaps = 37/267 (13%)

Query: 65   RKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLA---LSSKLQ 121
            R+   R  ELE  ++  +   ++ ++QL  ++       +        LLA   L+ +++
Sbjct: 840  RQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLN--LLADETLADRVE 897

Query: 122  ESQKQLQELSASE-------------EARAVELQKVSQETDQSCQSELQAIQNQHSIDSA 168
            E ++QL E   ++             E     LQ   ++ +Q  Q   QA Q Q   D+ 
Sbjct: 898  EIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQR--DAK 955

Query: 169  ALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRE 228
              A AL E+ Q +A F   +  +AA+     S   E   L+  L +        + QLR+
Sbjct: 956  QQAFALTEVVQRRAHF---SYEDAAEMLAKNSDLNE--KLRQRLEQAEQERTRAREQLRQ 1010

Query: 229  SKESETQAQAL----------ARETL--LQLETAKLSVEALRAEGMKAIEAYSSIASELE 276
            ++    Q   +           R+ L  L+ E   L V A      +A      + + L 
Sbjct: 1011 AQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLS 1070

Query: 277  RSRTRINLLEGLVSKLEADTSNANRNL 303
             +R+R N LE  ++  EA+  N  + L
Sbjct: 1071 ANRSRRNQLEKQLTFCEAEMDNLTKKL 1097

Length = 1486

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 94/511 (18%), Positives = 200/511 (39%), Gaps = 57/511 (11%)

Query: 70  RISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQE 129
           R S+    V R+  D + + +QL +     Q  +++ +D  ++L  L S+L E  ++++ 
Sbjct: 170 RASDARLGVERVLSDQRGSLDQLKA-----QIEEKEEKDLHERLNGLESELAELDEEIER 224

Query: 130 LSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAE 189
                E +A E +  + E  +  +   + ++         L + + +L++  A+ E   E
Sbjct: 225 YEEQRE-QARETRDEADEVLEEHEERREELET--------LEAEIEDLRETIAETERERE 275

Query: 190 SEAAQTKNAESAHLELQS----------LKGNLIETISL-MENMKNQLRESKESETQAQA 238
             A + ++      EL+           L     E +    E ++++  E ++   + + 
Sbjct: 276 ELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRV 335

Query: 239 LARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 298
            A+    + E+ +   + L     +  E  + + SELE +R  +      + +LE +   
Sbjct: 336 AAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE 395

Query: 299 ANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQ 358
                        D    +   +D +E   L EE   L+    +L + L  A  ++ E +
Sbjct: 396 LRERFG-------DAPVDLGNAEDFLEE--LREERDELREREAELEATLRTARERVEEAE 446

Query: 359 -IQSTVKIKSAFEQLEQIKHQSGLRE-----VELEAELQKAKSDIEELKANLMDKETELQ 412
            +    K     + +E   H   + E      ELEAEL+  + ++EE++  L ++  +L 
Sbjct: 447 ALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL-ERAEDLV 505

Query: 413 GISEENEGLHMQLD--KNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENE 470
              +  E L  + +  + L+ +R   +        +  E+L+    + E E +   E   
Sbjct: 506 EAEDRIERLEERREDLEELIAERRETIEEK----RERAEELRERAAELEAEAEEKREAAA 561

Query: 471 MLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLE 530
             + E  +   +   +NS LA   E       E+L ++  L+     +     R+ E+ E
Sbjct: 562 EAEEEAEEAREEVAELNSKLAELKE-----RIESLERIRTLLAAIADAEDEIERLREKRE 616

Query: 531 AAQSANCEAEAELRRLKVQSDQWRKAAEAAA 561
           A    N     + RR ++   + RK    A 
Sbjct: 617 ALAELN-----DERRERLAEKRERKRELEAE 642

Length = 880

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 66  KRPSRISE-LESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQ 124
           + P  +   L+ +V  L++ L+    + + S++  +  QQ+    +     L  K QE +
Sbjct: 138 EDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELE 197

Query: 125 KQLQEL-SASEEARAVELQKVSQETDQS 151
            QL++L   + E      QK  + TDQ+
Sbjct: 198 AQLEQLQEKAAETSQERKQKRKEITDQA 225

Length = 1123

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 31/194 (15%)

Query: 233 ETQAQALARETLLQLETAKLSVEALRAEGMKAIEAY------------------------ 268
            T  +A A E   Q+   +  V  LRAE                                
Sbjct: 76  ATDVEADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLF 135

Query: 269 ----SSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTM 324
               S++ ++LE    +I  LE  ++ L+A    A R   +  S + +  +K+KE     
Sbjct: 136 ESRKSTLRAQLELILAQIKQLEAELAGLQAQL-QALRQQLEVISEELEARRKLKEKGLVS 194

Query: 325 ESKHL--EEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLR 382
             + L  E E +  + E+G+L + LE+ + +++E Q++     ++  E++ +   ++  R
Sbjct: 195 RLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQAR 254

Query: 383 EVELEAELQKAKSD 396
             EL   L KA+  
Sbjct: 255 LAELRERLNKARDR 268

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	623
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	99.91
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	99.35
PRK02224	880	chromosome segregation protein; Provisional	99.27
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.01
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.99
PRK02224	880	chromosome segregation protein; Provisional	98.88
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.79
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.77
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.77
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.72
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.69
PRK03918	880	chromosome segregation protein; Provisional	98.63
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.63
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.62
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.62
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.61
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.55
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.31
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.29
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.11
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.03
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.01
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.9
PRK03918	880	chromosome segregation protein; Provisional	97.72
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.67
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.66
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	97.53
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.38
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.35
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.32
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.27
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.2
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.12
PRK11637	428	AmiB activator; Provisional	97.06
PF13514	1111	AAA_27: AAA domain	97.05
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.98
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.9
PRK11637	428	AmiB activator; Provisional	96.77
PHA02562	562	46 endonuclease subunit; Provisional	96.55
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.5
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.41
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.4
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.31
PHA02562	562	46 endonuclease subunit; Provisional	96.3
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.17
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.92
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.86
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.81
PRK04863	1486	mukB cell division protein MukB; Provisional	95.7
PRK01156	895	chromosome segregation protein; Provisional	95.62
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	95.61
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.41
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.3
PRK04863	1486	mukB cell division protein MukB; Provisional	95.28
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.17
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.06
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	94.85
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	94.74
KOG0996	1293	consensus Structural maintenance of chromosome pro	94.7
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	94.69
PRK01156	895	chromosome segregation protein; Provisional	94.62
KOG0996	1293	consensus Structural maintenance of chromosome pro	94.56
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.32
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.27
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.26
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.22
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	94.1
PRK04778	569	septation ring formation regulator EzrA; Provision	94.09
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.06
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.05
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.73
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	93.51
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.48
PRK09039	343	hypothetical protein; Validated	93.2
KOG4673	961	consensus Transcription factor TMF, TATA element m	93.16
KOG0971	1243	consensus Microtubule-associated protein dynactin	92.99
KOG0964	1200	consensus Structural maintenance of chromosome pro	92.92
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	92.89
PRK09039	343	hypothetical protein; Validated	92.85
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	92.76
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	92.74
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	92.62
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	92.57
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.85
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	91.56
PF13514	1111	AAA_27: AAA domain	91.44
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	91.28
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	91.13
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	90.97
COG4942	420	Membrane-bound metallopeptidase [Cell division and	90.7
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	89.89
KOG0933	1174	consensus Structural maintenance of chromosome pro	89.88
PRK11281	1113	hypothetical protein; Provisional	89.56
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	89.51
PLN03188	1320	kinesin-12 family protein; Provisional	89.49
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	88.89
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	88.78
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	88.29
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.13
PRK10246	1047	exonuclease subunit SbcC; Provisional	87.85
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	87.19
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	86.94
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	86.8
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	86.62
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	86.56
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	86.37
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	85.96
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	85.87
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	85.58
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	85.48
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	85.42
PRK10884	206	SH3 domain-containing protein; Provisional	84.75
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	84.72
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	84.68
KOG2991	330	consensus Splicing regulator [RNA processing and m	84.32
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	84.01
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	82.94
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	82.4
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	81.96
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	81.84
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	81.0
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	80.96
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	80.82
PF10186	302	Atg14: UV radiation resistance protein and autopha	80.81

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=99.91  E-value=1.6e-19  Score=196.79  Aligned_cols=444  Identities=25%  Similarity=0.311  Sum_probs=281.1

Q ss_pred             CCchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHhhhhHHHHHHHHHH-
Q 006962           68 PSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQE---SQKQLQELSASEEARAVELQK-  143 (623)
Q Consensus        68 ~~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLee---sQkQ~~e~Sa~e~sr~~Elqk-  143 (623)
                      +.|..+++.+|.++|+|+.++|+||..+|..|.++..+|+.+|+-+.+++.+|+.   .+++...++.+.+||+.|+++ 
T Consensus        26 ~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~  105 (522)
T PF05701_consen   26 LERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQG  105 (522)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhh
Confidence            4788899999999999999999999999999999999999999999999999996   478999999999999999987 


Q ss_pred             HhHHhHHhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHH
Q 006962          144 VSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMK  223 (623)
Q Consensus       144 ~~q~~d~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lK  223 (623)
                      +.......|+.||+.++.||+.+++.|.++..||++|+.++.++.++++.|+++|++|..-.+.-...+.+--.-|..+|
T Consensus       106 ~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lk  185 (522)
T PF05701_consen  106 IAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALK  185 (522)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666778999999999999999999999999999999999999999999999999999533322222222222222222


Q ss_pred             HHhhHhhhhHH-----------HHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 006962          224 NQLRESKESET-----------QAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKL  292 (623)
Q Consensus       224 s~l~e~keSeA-----------qa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskL  292 (623)
                      -.+.....+..           +-...+..+...|+.+...++.|+.+.    .....|...|+.+...+..|...+...
T Consensus       186 e~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~  261 (522)
T PF05701_consen  186 ESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAA  261 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222211111           111233555666777777787777776    445566667777666666654444333


Q ss_pred             hhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHH
Q 006962          293 EADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQL  372 (623)
Q Consensus       293 q~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~  372 (623)
                      ...-....                .   ...+....+...|.+.+.|+++.+..|..+.....      +++..      
T Consensus       262 ~~~~l~~~----------------~---~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~------~L~~~------  310 (522)
T PF05701_consen  262 KESKLEEE----------------A---EAKEKSSELQSSLASAKKELEEAKKELEKAKEEAS------SLRAS------  310 (522)
T ss_pred             HHHHHhhh----------------H---HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH------
Confidence            32111000                0   00011111333344444444444444443322210      00000      


Q ss_pred             HHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhh-----hhhhhhhHHHHHHhhHHH
Q 006962          373 EQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNL-----MCQRESQLNNDLRKLAQA  447 (623)
Q Consensus       373 e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~-----~~~ke~el~~~l~~~~~~  447 (623)
                          .      .-|..+|.+.+.++..|+.+.-......+++-.+=..++.+|.--.     ....-..+...|..+..+
T Consensus       311 ----v------esL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~E  380 (522)
T PF05701_consen  311 ----V------ESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSE  380 (522)
T ss_pred             ----H------HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHH
Confidence                0      0144555566666666666555555555555555555555553100     011224566666666666


Q ss_pred             HHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHH--------------
Q 006962          448 VEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLME--------------  513 (623)
Q Consensus       448 v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~e--------------  513 (623)
                      ....|......-.++..+..+.+..|..|...+.    ....+.-++++||++|.-|+..+..+.+              
T Consensus       381 ae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~----rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~  456 (522)
T PF05701_consen  381 AEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEE----RLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSS  456 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCC
Confidence            6666666666666666666666666666653322    1223444567777777777766654322              


Q ss_pred             -------HHHH-----------hhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHH
Q 006962          514 -------EADK-----------SNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAA  560 (623)
Q Consensus       514 -------e~~~-----------s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaA  560 (623)
                             |...           ++.|++-...|++++.+...+.-.=|.-+.-..++=|.|-+.|
T Consensus       457 ~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~k~al~~A  521 (522)
T PF05701_consen  457 KVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEERKEALEEA  521 (522)
T ss_pred             CeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                   2211           3446677777888888877776666666666677767666654

Several sequences in this family are described as being myosin heavy chain-like.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=99.35  E-value=3.6e-08  Score=108.60  Aligned_cols=411  Identities=24%  Similarity=0.275  Sum_probs=224.9

Q ss_pred             hhhhHHHHHHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHhh
Q 006962           71 ISELESQVSRLQEDLKKAK-------NQLSSSESWKQQAQQDAEDSKKQLLALS------------SKLQESQKQLQELS  131 (623)
Q Consensus        71 ~seLesql~q~QeeLkkaK-------eQL~~sE~~K~~a~~eleEskkQl~e~S------------skLeesQkQ~~e~S  131 (623)
                      +...+....++-.||..+|       -+|..+...+..|.++.+-++-++.++.            .+|+-++.|+....
T Consensus        50 l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~  129 (522)
T PF05701_consen   50 LEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAV  129 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence            3444555556666665544       5676777778888888888888877774            56888999999999


Q ss_pred             hhHHHHHHHHHHHhHHhHHhhHHHHHHHhhhhhccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH---
Q 006962          132 ASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAA------LASALNELQQLKAQFEMVAESEAAQTKNAESAH---  202 (623)
Q Consensus       132 a~e~sr~~Elqk~~q~~d~~wqsEleavq~qhs~Dsaa------L~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~---  202 (623)
                      +.+.+.-.||+++.++.+.+..--..+.++...+-+++      ...-..||.+||..|..+.-+-..+..+--...   
T Consensus       130 ~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~  209 (522)
T PF05701_consen  130 AELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAER  209 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887777777766555554      556667788888777776443333333322222   


Q ss_pred             -HHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHH---HHHHHHHHHHHHHHHhHh-HHHH---HHHhhhHHHHHHhhhHHH
Q 006962          203 -LELQSLKGNLIETISLMENMKNQLRESKESET---QAQALARETLLQLETAKL-SVEA---LRAEGMKAIEAYSSIASE  274 (623)
Q Consensus       203 -~ELe~lk~~laetl~lvE~lKs~l~e~keSeA---qa~aL~~E~~~QLE~aka-tve~---L~adg~Ka~e~~~sl~~e  274 (623)
                       ......+..+.++-.-|+.|+..+...+.-+.   .+...+..++.+|..... .++.   ...........+.++..+
T Consensus       210 ~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~E  289 (522)
T PF05701_consen  210 EQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKE  289 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHH
Confidence             22223333333333444444444422222221   222223333333333322 1111   122222233334444455


Q ss_pred             HHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhh---------hhhhhhhhhHHHHHhhchhhHHHHHH
Q 006962          275 LERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKE---------NQDTMESKHLEEELSSLKSEVGQLRS  345 (623)
Q Consensus       275 Le~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~---------~~~~~e~~~Le~EL~s~ksEIeeLRs  345 (623)
                      |+..+..++.....++.|+....+...-           ....+.         ......+..|+.+|..++++++-++ 
T Consensus       290 Le~ak~~L~~~k~E~~~L~~~vesL~~E-----------Le~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~-  357 (522)
T PF05701_consen  290 LEEAKKELEKAKEEASSLRASVESLRSE-----------LEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK-  357 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH-
Confidence            5555554444444444444322211100           000000         0000011124444444444443222 


Q ss_pred             HHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhh
Q 006962          346 ALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL  425 (623)
Q Consensus       346 aLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei  425 (623)
                         ..+.+..+....++..+..+..-.+..|.+-    .....++.+++.+++..|+.+-.-|..|+.+..+-+.-+---
T Consensus       358 ---~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea----~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasE  430 (522)
T PF05701_consen  358 ---AEEEKAKEAMSELPKALQQLSSEAEEAKKEA----EEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASE  430 (522)
T ss_pred             ---hhhcchhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2333333444444444444444444444332    233446678888888888888888888777655544222111


Q ss_pred             hhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhH-----------HHHhhHHHhhHHHHHHhchhhccCCccchhhHHHH
Q 006962          426 DKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKE-----------TELQNISEENEMLKLEISKRELDTPNMNSNLAAEV  494 (623)
Q Consensus       426 ~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke-----------~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~  494 (623)
                      .                   --++.+|+ |-+.+           ..+-.-..|++.|.......+--..+....|.+.|
T Consensus       431 a-------------------~Ala~ik~-l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqv  490 (522)
T PF05701_consen  431 A-------------------LALAEIKA-LSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQV  490 (522)
T ss_pred             H-------------------HHHHHHHH-hhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0                   11233333 11111           12334458888888887765555556677888999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhhH
Q 006962          495 EAARSAEKEALMKLGLLMEEADKSNR  520 (623)
Q Consensus       495 e~Ak~ae~ea~~kl~~~~ee~~~s~~  520 (623)
                      ++|++.+.++++||--+..|.+.+..
T Consensus       491 e~ak~se~e~l~kle~~~~e~~~~k~  516 (522)
T PF05701_consen  491 EAAKASEKEILEKLEEAMKEIEERKE  516 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998877653

Several sequences in this family are described as being myosin heavy chain-like.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.27  E-value=8.3e-06  Score=93.57  Aligned_cols=129  Identities=14%  Similarity=0.090  Sum_probs=73.6

Q ss_pred             HHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962          398 EELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  477 (623)
Q Consensus       398 eELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~  477 (623)
                      .++...+-+...++..+-.+...|..++..-.   .-.++..+|..+..++..|+..+-+.+.....+..+...++.+|.
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le---~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~  637 (880)
T PRK02224        561 AEAEEEAEEAREEVAELNSKLAELKERIESLE---RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKR  637 (880)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444456666666666666665332   256777777788888888888777777777777777888888887


Q ss_pred             hhhccCC-ccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHH
Q 006962          478 KRELDTP-NMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQL  529 (623)
Q Consensus       478 k~e~~~~-~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL  529 (623)
                      ..+.... ...+.+......+...-...-.+++.+..+.+.-..+...+..++
T Consensus       638 ~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~  690 (880)
T PRK02224        638 ELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENEL  690 (880)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5543211 233334444444444444444444444544444444444433333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.01  E-value=7.8e-05  Score=92.70  Aligned_cols=239  Identities=21%  Similarity=0.308  Sum_probs=147.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHh--
Q 006962           71 ISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQET--  148 (623)
Q Consensus        71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~--  148 (623)
                      |.+|++++.-++++|..-+.+.+-+|..+.....++++-+.++.+..   .....    ...+.+.+-.|++++...+  
T Consensus      1099 i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~---~~t~~----q~e~~~k~e~e~~~l~~~lee 1171 (1930)
T KOG0161|consen 1099 IKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQG---GTTAA----QLELNKKREAEVQKLRRDLEE 1171 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            67777777777777777777777777777777777777666665551   11111    1222333444445544444  


Q ss_pred             -HHhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 006962          149 -DQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLR  227 (623)
Q Consensus       149 -d~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~  227 (623)
                       ...-...++.+++.|+..++-|...+..+++.|..|.--..              .++..-+++...+..+..-+-.  
T Consensus      1172 e~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~--------------~lq~e~~~l~~ev~~~~~~k~~-- 1235 (1930)
T KOG0161|consen 1172 ETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKS--------------DLQREIADLAAELEQLSSEKKD-- 1235 (1930)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhhhcc--
Confidence             44556778889999999999999999999999998875332              2222333332222222221111  


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCC
Q 006962          228 ESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNC  307 (623)
Q Consensus       228 e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~  307 (623)
                       ++.-.-...+.+.++..++......+..|-..-.+++.++..+...|+++++.+..+-...+.+...+....       
T Consensus      1236 -~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k------- 1307 (1930)
T KOG0161|consen 1236 -LEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELK------- 1307 (1930)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence             111111112334666777777777777788888899999999999999998888777666666665433111       


Q ss_pred             CCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHH
Q 006962          308 SGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEI  349 (623)
Q Consensus       308 ~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~  349 (623)
                               -....+.+.-..|...+..+..|+..|+..++.
T Consensus      1308 ---------~qle~e~r~k~~l~~~l~~l~~e~~~l~e~lee 1340 (1930)
T KOG0161|consen 1308 ---------RQLEEETREKSALENALRQLEHELDLLREQLEE 1340 (1930)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     112223334444667777777777777777763

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.99  E-value=0.00012  Score=91.22  Aligned_cols=111  Identities=23%  Similarity=0.330  Sum_probs=76.4

Q ss_pred             hhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHH
Q 006962          435 SQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEE  514 (623)
Q Consensus       435 ~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee  514 (623)
                      ++|.....++..++.+|--.|.+.|..+..+...+..+..+|.           +.-..++.       ..-.=..+-..
T Consensus      1262 ~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle-----------~~k~qle~-------e~r~k~~l~~~ 1323 (1930)
T KOG0161|consen 1262 NDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLE-----------ELKRQLEE-------ETREKSALENA 1323 (1930)
T ss_pred             HHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-------HHHHHHHHHHH
Confidence            4466677777777888888888888877777777777777776           22111211       11111112222


Q ss_pred             HHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHh
Q 006962          515 ADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASM  563 (623)
Q Consensus       515 ~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaAaa~  563 (623)
                      +.....-...+.+|++-.+.++.+|.-.+.+..+++.|||+=.+.-..-
T Consensus      1324 l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~ 1372 (1930)
T KOG0161|consen 1324 LRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQ 1372 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333334778999999999999999999999999999999988766554

>PRK02224 chromosome segregation protein; Provisional

Probab=98.88  E-value=0.0005  Score=79.23  Aligned_cols=42  Identities=14%  Similarity=0.296  Sum_probs=23.8

Q ss_pred             hHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962          436 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  477 (623)
Q Consensus       436 el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~  477 (623)
                      ++...+..+...++.+...+.+.+..+..+.++.+.|..++.
T Consensus       513 ~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~  554 (880)
T PRK02224        513 RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE  554 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445555555666666666666666666655554

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.79  E-value=0.00022  Score=85.51  Aligned_cols=109  Identities=19%  Similarity=0.255  Sum_probs=69.0

Q ss_pred             HHHhhhhH----HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhch-----HHHHHHHHHH---HHhhccCCCCcc
Q 006962          505 LMKLGLLM----EEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQS-----DQWRKAAEAA---ASMLSTGNNGKC  572 (623)
Q Consensus       505 ~~kl~~~~----ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQs-----eQWRKAAeaA---aa~Ls~g~ng~~  572 (623)
                      +..||.|.    +|.++...|-..+..|++....|...+..-+..+.-..     +=|.+...-=   -..|.|||+|.+
T Consensus       958 i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L 1037 (1163)
T COG1196         958 IEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAEL 1037 (1163)
T ss_pred             HHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEE
Confidence            55666654    77888899999999999988888888777666654332     2233333322   234556777864


Q ss_pred             cccccCCCCCCCC-------------------CC---------------CCCCCCCC--CCcc---hhhhhhccCchhhH
Q 006962          573 MERSGSIDSNYNP-------------------IT---------------GKIPLPYS--DDID---DDLLKKKNGNVLKK  613 (623)
Q Consensus       573 ~er~gs~d~~~~~-------------------~~---------------g~~~sp~~--dd~d---d~~~kkkng~~lk~  613 (623)
                      .= +++-| .|++                   -|               .+..+||+  |+.|   |+...++=+++|+.
T Consensus      1038 ~l-~~~dd-~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e 1115 (1163)
T COG1196        1038 EL-TEPDD-PLTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKE 1115 (1163)
T ss_pred             Ee-CCCCc-hhhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHH
Confidence            43 44434 3441                   12               26788884  6665   44566767777777


Q ss_pred             hh
Q 006962          614 IG  615 (623)
Q Consensus       614 ~g  615 (623)
                      ++
T Consensus      1116 ~s 1117 (1163)
T COG1196        1116 MS 1117 (1163)
T ss_pred             hC
Confidence            65

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.77  E-value=9.6e-05  Score=82.64  Aligned_cols=232  Identities=23%  Similarity=0.257  Sum_probs=145.1

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHH
Q 006962          204 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN  283 (623)
Q Consensus       204 ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~  283 (623)
                      ++.++++...+--++++.++..-.+.++.+++-+.-+.++..++.....+...+..+...+.+.++.+.       .+++
T Consensus       228 di~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~q-------e~lq  300 (546)
T PF07888_consen  228 DIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQ-------EQLQ  300 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH-------HHHH
Confidence            344444444444455566665555556555554433344555544444444444444444444444444       4444


Q ss_pred             hHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHH
Q 006962          284 LLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTV  363 (623)
Q Consensus       284 ~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~  363 (623)
                      .-++.+..|...+....                       ..-.+.-++|..++-+..+|+..|.++...+.|.+.+.. 
T Consensus       301 aSqq~~~~L~~EL~~~~-----------------------~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~-  356 (546)
T PF07888_consen  301 ASQQEAELLRKELSDAV-----------------------NVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWA-  356 (546)
T ss_pred             HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            44444444444332111                       011346788999999999999999988888876665443 


Q ss_pred             HHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHh
Q 006962          364 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRK  443 (623)
Q Consensus       364 ~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~  443 (623)
                      +.+.                 -|.......+..|..|+..+--++.-||.=--|+..|..+|++..++.     ...|.-
T Consensus       357 qEk~-----------------~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n-----~vqlsE  414 (546)
T PF07888_consen  357 QEKQ-----------------ALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCN-----RVQLSE  414 (546)
T ss_pred             HHHH-----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----HHHHHH
Confidence            1111                 122223345678889999998888899998889999999998654444     236777


Q ss_pred             hHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccch
Q 006962          444 LAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNS  488 (623)
Q Consensus       444 ~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~  488 (623)
                      ...+|.+||+.|-.-.+|-..+..||.+|+-.|.+.+...+++.|
T Consensus       415 ~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~  459 (546)
T PF07888_consen  415 NRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVAD  459 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            777888999988777777778889999998888866655444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.77  E-value=0.0011  Score=76.62  Aligned_cols=40  Identities=23%  Similarity=0.373  Sum_probs=18.0

Q ss_pred             HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhh
Q 006962          386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL  425 (623)
Q Consensus       386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei  425 (623)
                      +..++..+...+.++...+-.-+.++..+.++...|...|
T Consensus       745 l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  784 (1179)
T TIGR02168       745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI  784 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.72  E-value=0.0012  Score=76.79  Aligned_cols=69  Identities=28%  Similarity=0.375  Sum_probs=44.0

Q ss_pred             HHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhh
Q 006962          385 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANL  455 (623)
Q Consensus       385 ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L  455 (623)
                      -+..+++.++..|..|-..|-|+++.|-.+.++...|-+-..+.  .....-|...|.+..+.+..|...|
T Consensus       469 ~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~--~s~i~~l~I~lEk~rek~~kl~~ql  537 (775)
T PF10174_consen  469 TYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKK--DSEIERLEIELEKKREKHEKLEKQL  537 (775)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchh--hhHHHHHHHHHHHhhhHHHHHHHHH
Confidence            35567777777788888888888887777777777766655432  1123345555666666666555544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.69  E-value=0.0036  Score=77.89  Aligned_cols=425  Identities=20%  Similarity=0.255  Sum_probs=244.5

Q ss_pred             CchhhhHHHHHHHHHH----HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh---hhHHHHHHHH
Q 006962           69 SRISELESQVSRLQED----LKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELS---ASEEARAVEL  141 (623)
Q Consensus        69 ~r~seLesql~q~Qee----LkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~S---a~e~sr~~El  141 (623)
                      .++.+|+..+...+.+    ++++.+++.+....+.....++.-..-++.=+..+|+-..+-+.-.-   ..+..|-..|
T Consensus       636 ~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l  715 (1822)
T KOG4674|consen  636 KRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNL  715 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555444433    34455555555555555555554444444333344443322221111   1222455555


Q ss_pred             HHHhHHhHH---hhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcH------
Q 006962          142 QKVSQETDQ---SCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNL------  212 (623)
Q Consensus       142 qk~~q~~d~---~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~l------  212 (623)
                      +..-+..+.   ..-+||-++..       -+...-.||..||.+=.+-..++.....--+....+.+.++..+      
T Consensus       716 ~~~i~~~~q~~~~~s~eL~~a~~-------k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~  788 (1822)
T KOG4674|consen  716 QSTISKQEQTVHTLSQELLSANE-------KLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQ  788 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554444444   23333333222       35566678888888877777777776666666665555555432      


Q ss_pred             ----------------HHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHH
Q 006962          213 ----------------IETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE  276 (623)
Q Consensus       213 ----------------aetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe  276 (623)
                                      ..-..|+..+...-..+.+-....+.+-+..-.+|+.+...|+.+..+..++...+.++...++
T Consensus       789 ~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~  868 (1822)
T KOG4674|consen  789 KNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIA  868 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            1111222222223333444457788888889999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhh--
Q 006962          277 RSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL--  354 (623)
Q Consensus       277 ~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~--  354 (623)
                      .-+.++..|+.-+........+-+.       +           +.+.+...+...|.....+|.-|+..|.++....  
T Consensus       869 ~le~k~~eL~k~l~~~~~~~~~l~~-------~-----------~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~  930 (1822)
T KOG4674|consen  869 KLEIKLSELEKRLKSAKTQLLNLDS-------K-----------SSNEDATILEDTLRKELEEITDLKEELTDALSQIRE  930 (1822)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhhccc-------c-----------chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888877776654331       1           1122333444445555555655555555544433  


Q ss_pred             -hhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 006962          355 -NEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQR  433 (623)
Q Consensus       355 -qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~k  433 (623)
                       ++.|.       +.=..++++++....=-.++++.++.....|..|.-+|++-+++...++++=.   ..++.  .-.+
T Consensus       931 yqe~~~-------s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~---~~~k~--~e~~  998 (1822)
T KOG4674|consen  931 YQEEYS-------SLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELE---LSTKG--KEDK  998 (1822)
T ss_pred             HHHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccc--hhhh
Confidence             33222       11234566677666666888888999999999999888888888777765532   22211  1112


Q ss_pred             hhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHH
Q 006962          434 ESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLME  513 (623)
Q Consensus       434 e~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~e  513 (623)
                      =..+..++.-+..++..+....-+-...+..+..++...-..++           .|-..-+.=-.--.+...+|+.+.+
T Consensus       999 ~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~-----------~a~~~Ye~el~~ha~~~q~l~kl~e 1067 (1822)
T KOG4674|consen  999 LLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLR-----------KAQSKYESELVQHADLTQKLIKLRE 1067 (1822)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23455555555555555555444444444444444333322222           1111111111112345677888888


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 006962          514 EADKSNRRAARMAEQLEAAQSANCEAEA  541 (623)
Q Consensus       514 e~~~s~~~~ar~~EqL~aaq~a~~elEa  541 (623)
                      ++.+.+.-+-.+..-.+..+.++.+.++
T Consensus      1068 e~~~~~~e~~~Lk~~~~~~~~~l~e~~~ 1095 (1822)
T KOG4674|consen 1068 EFAKCNDELLKLKKSRESRHALLSEQER 1095 (1822)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhHHhhccc
Confidence            8888888888888888888877766543

>PRK03918 chromosome segregation protein; Provisional

Probab=98.63  E-value=0.0025  Score=73.23  Aligned_cols=33  Identities=21%  Similarity=0.194  Sum_probs=17.5

Q ss_pred             HHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHH
Q 006962          500 AEKEALMKLGLLMEEADKSNRRAARMAEQLEAA  532 (623)
Q Consensus       500 ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aa  532 (623)
                      .-.+.-.+++.+..+++.-......+.++++..
T Consensus       667 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~  699 (880)
T PRK03918        667 EYLELSRELAGLRAELEELEKRREEIKKTLEKL  699 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555555555555444

>TIGR00606 rad50 rad50

Probab=98.63  E-value=0.0042  Score=75.66  Aligned_cols=59  Identities=12%  Similarity=0.241  Sum_probs=49.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 006962           72 SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQEL  130 (623)
Q Consensus        72 seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~  130 (623)
                      ..|+..+..++.++..+++..+.++..-..+...+.....++..+..+|+.....+...
T Consensus       573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~  631 (1311)
T TIGR00606       573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDV  631 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            67888888899999999999988888888888888888888888888888887777743

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.62  E-value=0.0031  Score=73.56  Aligned_cols=154  Identities=18%  Similarity=0.248  Sum_probs=91.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhH
Q 006962           71 ISELESQVSRLQEDLKKAKNQLSSSESWKQQ-AQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETD  149 (623)
Q Consensus        71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~~-a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d  149 (623)
                      +.+|+.-...++.+|...-.-|.++-+.-+. ...+|+--+....+.+.+|.-.+.|+-..-+--...-.+++.+..++ 
T Consensus         5 l~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-   83 (775)
T PF10174_consen    5 LERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-   83 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence            3344444444555555554445444444333 56677777777777778887777777766665556667788877777 


Q ss_pred             HhhHHHHHHHhhh------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHH
Q 006962          150 QSCQSELQAIQNQ------HSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMK  223 (623)
Q Consensus       150 ~~wqsEleavq~q------hs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lK  223 (623)
                       -.+.|+...+.+      +......|.-+-..+.+|..+......-=..--.-.+.++..|+.+++++..+-.-|+.|.
T Consensus        84 -r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~  162 (775)
T PF10174_consen   84 -RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQ  162 (775)
T ss_pred             -HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             567777766665      2211222444555555555554443332222335778888999999999855555555555


Q ss_pred             HHh
Q 006962          224 NQL  226 (623)
Q Consensus       224 s~l  226 (623)
                      ..|
T Consensus       163 e~L  165 (775)
T PF10174_consen  163 EML  165 (775)
T ss_pred             HHH
Confidence            444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.62  E-value=0.0031  Score=73.51  Aligned_cols=59  Identities=17%  Similarity=0.150  Sum_probs=34.9

Q ss_pred             HHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHH
Q 006962          503 EALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAA  561 (623)
Q Consensus       503 ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaAa  561 (623)
                      +.-.++..+.++++........+..+++..+.....++.++..++.+.+++....+..-
T Consensus       872 ~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~  930 (1164)
T TIGR02169       872 ELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE  930 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555666666666666666666666666666666665554433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.61  E-value=0.0031  Score=73.10  Aligned_cols=22  Identities=14%  Similarity=0.291  Sum_probs=9.1

Q ss_pred             HHHHHhhchhhHHHHHHHHHHH
Q 006962          329 LEEELSSLKSEVGQLRSALEIA  350 (623)
Q Consensus       329 Le~EL~s~ksEIeeLRsaLe~~  350 (623)
                      +..++..+..++..|...+...
T Consensus       675 l~~e~~~l~~~~~~l~~~l~~~  696 (1179)
T TIGR02168       675 RRREIEELEEKIEELEEKIAEL  696 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.55  E-value=0.0038  Score=72.84  Aligned_cols=41  Identities=12%  Similarity=0.234  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006962           79 SRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQ  126 (623)
Q Consensus        79 ~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ  126 (623)
                      ......++.+.+.|       .++.+.+.+.+.++..+...++.++++
T Consensus       166 ~~~~~~~~~~~~~l-------~~~~~~l~el~~~~~~L~~q~~~l~~~  206 (1164)
T TIGR02169       166 AEFDRKKEKALEEL-------EEVEENIERLDLIIDEKRQQLERLRRE  206 (1164)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444       444444455555555544444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.31  E-value=0.023  Score=68.72  Aligned_cols=91  Identities=25%  Similarity=0.398  Sum_probs=41.4

Q ss_pred             HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhh-----hhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHH
Q 006962          386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKN-----LMCQRESQLNNDLRKLAQAVEDLKANLMDKET  460 (623)
Q Consensus       386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~-----~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~  460 (623)
                      +..++..+...+.+|.+.+...+..+..+.+.=..|+..+..-     .-...-..+..++...+..+..|...+...+.
T Consensus       742 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  821 (1163)
T COG1196         742 LEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQ  821 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444455556666666666655555555555421     11123334444444444444444444444433


Q ss_pred             HHhhHHHhhHHHHHHh
Q 006962          461 ELQNISEENEMLKLEI  476 (623)
Q Consensus       461 elq~~~~ene~Lk~e~  476 (623)
                      .++.+..+.+.+..++
T Consensus       822 ~~~~~~~ei~~l~~~~  837 (1163)
T COG1196         822 RRERLEQEIEELEEEI  837 (1163)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333334433333333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.29  E-value=1.4e-07  Score=109.56  Aligned_cols=360  Identities=22%  Similarity=0.332  Sum_probs=0.0

Q ss_pred             CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHh
Q 006962           69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQET  148 (623)
Q Consensus        69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~  148 (623)
                      ..|-+|++++.-+++||..-+.--+.+|..|..+..+|++.+.+|.+....       -.....+-+-|=.||.++..++
T Consensus        39 k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~-------t~aq~E~~kkrE~El~~Lrr~L  111 (859)
T PF01576_consen   39 KKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGA-------TQAQIELNKKREAELAKLRRDL  111 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-------HHhhHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999999988889999998888888877766554422       1222223334446777777777


Q ss_pred             HH---hhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHH
Q 006962          149 DQ---SCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQ  225 (623)
Q Consensus       149 d~---~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~  225 (623)
                      +.   .-...+..+++.|...++.|..-+..+++.|..|+-...   .              +..++.+....|+.+-..
T Consensus       112 Ee~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~---~--------------l~~e~~dL~~~l~~~~k~  174 (859)
T PF01576_consen  112 EEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKS---Q--------------LEAELDDLQAQLDSLQKA  174 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--------------HHhHHHHHHHHHHHHHHH
Confidence            64   334668889999999999999999999998887764322   1              222222222222222222


Q ss_pred             hhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhcccccccc
Q 006962          226 LRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ  305 (623)
Q Consensus       226 l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~  305 (623)
                      -.+++...-+...-+.++..+++-...++.-|...-.++...+..|...|+..++.+..|.-..+.|...+......   
T Consensus       175 k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~---  251 (859)
T PF01576_consen  175 KQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQ---  251 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---
Confidence            22222222222333355666666777777777777777777788888888877777777766666666544322211   


Q ss_pred             CCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHH---HhhhhhhhhhHHHHh---hH--------HHH
Q 006962          306 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAE---TKLNEGQIQSTVKIK---SA--------FEQ  371 (623)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~E---tr~qEE~i~st~~i~---~a--------ye~  371 (623)
                           +        ..+...-..|...+..+..++..|+..|++-.   ..|+-.+..++.+|.   .-        ++.
T Consensus       252 -----l--------eeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~Ee  318 (859)
T PF01576_consen  252 -----L--------EEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEE  318 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----H--------HhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHH
Confidence                 0        01111222244555555555555555554211   111111111111111   00        122


Q ss_pred             HHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHH
Q 006962          372 LEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDL  451 (623)
Q Consensus       372 ~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~L  451 (623)
                      ++..|--...+-.++...|..++..+.       --|..-..+..|.+-|.+++.+.  ...-..|...-++++..++++
T Consensus       319 lEeaKKkL~~~L~el~e~le~~~~~~~-------~LeK~k~rL~~EleDl~~eLe~~--~~~~~~LeKKqr~fDk~l~e~  389 (859)
T PF01576_consen  319 LEEAKKKLERKLQELQEQLEEANAKVS-------SLEKTKKRLQGELEDLTSELEKA--QAAAAELEKKQRKFDKQLAEW  389 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHH
Confidence            233333333333333333333332222       22333344555666666666533  222345666666777777777


Q ss_pred             HHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962          452 KANLMDKETELQNISEENEMLKLEIS  477 (623)
Q Consensus       452 Ka~L~dke~elq~~~~ene~Lk~e~~  477 (623)
                      |+.+.+.-.++..+..++..+..++.
T Consensus       390 k~~~~~~~~e~d~~q~e~r~~~te~~  415 (859)
T PF01576_consen  390 KAKVEELQAERDAAQREARELETELF  415 (859)
T ss_dssp             --------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            77666555555555555555555544

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.11  E-value=0.073  Score=66.86  Aligned_cols=97  Identities=26%  Similarity=0.355  Sum_probs=73.5

Q ss_pred             chHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhh------hhhhhhhhhHHHHHHhhHHHHHHHHHhh
Q 006962          382 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDK------NLMCQRESQLNNDLRKLAQAVEDLKANL  455 (623)
Q Consensus       382 RE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~------~~~~~ke~el~~~l~~~~~~v~~LKa~L  455 (623)
                      |-.||..++.+++.+|+.|.-.|--..++++-++-+++.|..+...      .+......--..++.++..+|..||..|
T Consensus      1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el 1323 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEEL 1323 (1822)
T ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence            3467888888888888888888888888888888888888777641      1222223344567888888999999999


Q ss_pred             hhhHHHHhhHHHhhHHHHHHhch
Q 006962          456 MDKETELQNISEENEMLKLEISK  478 (623)
Q Consensus       456 ~dke~elq~~~~ene~Lk~e~~k  478 (623)
                      ..|++.++.+..++..++..+++
T Consensus      1324 ~~ke~~~~el~~~~~~~q~~~k~ 1346 (1822)
T KOG4674|consen 1324 EEKENLIAELKKELNRLQEKIKK 1346 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888866653

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.03  E-value=1e-06  Score=102.54  Aligned_cols=377  Identities=24%  Similarity=0.292  Sum_probs=0.0

Q ss_pred             hhHHHHHHHhhhhhccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHH-HHHHHHHH
Q 006962          151 SCQSELQAIQNQHSIDSAA-------LASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIE-TISLMENM  222 (623)
Q Consensus       151 ~wqsEleavq~qhs~Dsaa-------L~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~lae-tl~lvE~l  222 (623)
                      .|.+.|+-++.+....+-.       |-..-.++..|+.+|..-.++.+..-.....++.+|..++..+.. +...+   
T Consensus       240 ~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~---  316 (859)
T PF01576_consen  240 SLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRT---  316 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhH---
Confidence            4566666666665544443       444445667777777777777777777777777777777777633 22212   


Q ss_pred             HHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccc
Q 006962          223 KNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRN  302 (623)
Q Consensus       223 Ks~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~  302 (623)
                          .++++++-....-+.++..+++.++..+..|.---.++...+.-+..+|+...+.+..||.-+.++...++.....
T Consensus       317 ----EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~  392 (859)
T PF01576_consen  317 ----EELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAK  392 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                2233333333334478888899999999999999999999999999999999999999999888887655533311


Q ss_pred             cccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhh---hhhhhhhHHHHhhHHHHHHHHhhhc
Q 006962          303 LSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL---NEGQIQSTVKIKSAFEQLEQIKHQS  379 (623)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~---qEE~i~st~~i~~aye~~e~~Kses  379 (623)
                              +... .........++..+..++-.++.++++++..++..+..-   +.|...++.+           ....
T Consensus       393 --------~~~~-~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q-----------~~~~  452 (859)
T PF01576_consen  393 --------VEEL-QAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQ-----------LDDA  452 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------HHHH-HHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhh-----------hhhh
Confidence                    1000 111222334555566777777777777777666555432   4444444322           3344


Q ss_pred             ccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhh--h------hhhhhhhhhHHHHHHhhHHHHHHH
Q 006962          380 GLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD--K------NLMCQRESQLNNDLRKLAQAVEDL  451 (623)
Q Consensus       380 ~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~--~------~~~~~ke~el~~~l~~~~~~v~~L  451 (623)
                      +..-++|+...+.+...+.+|+..|-+-|..|+..  |+..|..++.  .      ..-..++.++..--+..-..|..|
T Consensus       453 ~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~--E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~l  530 (859)
T PF01576_consen  453 GKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAE--EQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESL  530 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHH
Confidence            55668899999999999999999999999999884  4444444432  1      111233444444444444455555


Q ss_pred             HHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHH
Q 006962          452 KANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEA  531 (623)
Q Consensus       452 Ka~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~a  531 (623)
                      .+.|..=-..-..+....--|-.+|+-.+......+    -...-+...-......+.-+.-+++...+--..+.+++..
T Consensus       531 e~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n----~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~  606 (859)
T PF01576_consen  531 EAELEEERKERAEALREKKKLESDLNELEIQLDHAN----RANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAV  606 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            555532222222333333334444442221111110    0001111111222333334445556655555566666667


Q ss_pred             HHHhhHHHHHHHhhhhhchHH---HHHHHHHH
Q 006962          532 AQSANCEAEAELRRLKVQSDQ---WRKAAEAA  560 (623)
Q Consensus       532 aq~a~~elEaElrrLrVQseQ---WRKAAeaA  560 (623)
                      ++.-...|.+|+-.+++..++   =||.||+=
T Consensus       607 ~e~r~~~l~~elee~~~~~~~a~r~rk~aE~e  638 (859)
T PF01576_consen  607 SERRLRALQAELEELREALEQAERARKQAESE  638 (859)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777788888888775555   56666643

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>TIGR00606 rad50 rad50

Probab=98.01  E-value=0.091  Score=64.44  Aligned_cols=44  Identities=14%  Similarity=0.132  Sum_probs=25.5

Q ss_pred             CCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhh
Q 006962          306 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL  354 (623)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~  354 (623)
                      .|.-+|...+.     .+.-.++|+..+..+-..+..+...+...+..|
T Consensus       682 LC~R~f~~eee-----~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~  725 (1311)
T TIGR00606       682 VCQRVFQTEAE-----LQEFISDLQSKLRLAPDKLKSTESELKKKEKRR  725 (1311)
T ss_pred             CCCCCCCChhH-----HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence            57777654433     123455566666666556666666666655555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.90  E-value=0.012  Score=67.39  Aligned_cols=252  Identities=23%  Similarity=0.292  Sum_probs=150.4

Q ss_pred             HHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHh
Q 006962          255 EALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELS  334 (623)
Q Consensus       255 e~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~  334 (623)
                      -.+.-....+.+.+..|..+.+..-.+|..||--+++|+..++...  .+.|+..+.            ..-.+|..++.
T Consensus        25 a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~--~~~~pa~ps------------e~E~~Lq~E~~   90 (617)
T PF15070_consen   25 AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP--PPEPPAGPS------------EVEQQLQAEAE   90 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--Cccccccch------------HHHHHHHHHHH
Confidence            3455556677788888999999999999999999999998776433  223332221            11123556666


Q ss_pred             hchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhH-----------------
Q 006962          335 SLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDI-----------------  397 (623)
Q Consensus       335 s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdI-----------------  397 (623)
                      .++.|++.|...|.+- .   +.|.+++           .+..+...|-.+|+..|.......                 
T Consensus        91 ~L~kElE~L~~qlqaq-v---~~ne~Ls-----------~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~  155 (617)
T PF15070_consen   91 HLRKELESLEEQLQAQ-V---ENNEQLS-----------RLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATA  155 (617)
T ss_pred             HHHHHHHHHHHHHHHH-H---HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence            6666665555544421 1   1222222           112222333344444444444433                 


Q ss_pred             -------HHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhH
Q 006962          398 -------EELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENE  470 (623)
Q Consensus       398 -------eELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene  470 (623)
                             .+||..|-.-+.-+-.|+.+|-.|.+.+....-  .-.+|...|-.+...+..+|..+.-|+.+++++..++.
T Consensus       156 SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~--~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~d  233 (617)
T PF15070_consen  156 SRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQH--VKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRD  233 (617)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence                   345555544444444455555444444432222  22578888889999999999999999999999999999


Q ss_pred             HHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhh----hHHHH--HHhhHHHH---------HHHHHHHHHHHh
Q 006962          471 MLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGL----LMEEA--DKSNRRAA---------RMAEQLEAAQSA  535 (623)
Q Consensus       471 ~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~----~~ee~--~~s~~~~a---------r~~EqL~aaq~a  535 (623)
                      .+...+..|.+.-            -.-+.|.+++-+=-+    ++..+  +++..++.         ...+.|+++-.-
T Consensus       234 q~~~~Lqqy~a~~------------q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qq  301 (617)
T PF15070_consen  234 QYLGHLQQYVAAY------------QQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQ  301 (617)
T ss_pred             HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999998764221            222456666655322    22233  22333333         455788888888


Q ss_pred             hHHHHHHHhhhhhc
Q 006962          536 NCEAEAELRRLKVQ  549 (623)
Q Consensus       536 ~~elEaElrrLrVQ  549 (623)
                      |..|.+.|.-+..-
T Consensus       302 NqqL~~qls~~~~~  315 (617)
T PF15070_consen  302 NQQLQAQLSLMALP  315 (617)
T ss_pred             hHHHHHHHHhhcCC
Confidence            88888888766543

>PRK03918 chromosome segregation protein; Provisional

Probab=97.72  E-value=0.17  Score=58.56  Aligned_cols=40  Identities=13%  Similarity=0.197  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhH
Q 006962           79 SRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSS  118 (623)
Q Consensus        79 ~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~Ss  118 (623)
                      ..++..++..+.++......-.....++...+.++..+..
T Consensus       189 ~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~  228 (880)
T PRK03918        189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK  228 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445545555555555555555555555544444443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.67  E-value=0.24  Score=58.87  Aligned_cols=56  Identities=20%  Similarity=0.288  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhh
Q 006962          175 NELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESK  230 (623)
Q Consensus       175 ~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~k  230 (623)
                      -|++++|.||+-.-+=+++-...-.+-+.+|...|.+.-++...-+.++..+.|.-
T Consensus       255 ~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~a  310 (1243)
T KOG0971|consen  255 KELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTA  310 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555666677777777777777777777766654

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.66  E-value=1.4e-05  Score=91.11  Aligned_cols=84  Identities=19%  Similarity=0.246  Sum_probs=0.0

Q ss_pred             hHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHH
Q 006962          383 EVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETEL  462 (623)
Q Consensus       383 E~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~el  462 (623)
                      ..-|..++....++|..|...+-+-+.++..+..++..++..+...  ...-..|+..+.....++.-||+.|-..+++.
T Consensus       352 ~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~--~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~  429 (722)
T PF05557_consen  352 NASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEAL--KKLIRRLERQKALATKERDYLRAQLKSYDKEE  429 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3444455555555555555555555555555666666666655422  12234667777777788888888887777766


Q ss_pred             hhHHHh
Q 006962          463 QNISEE  468 (623)
Q Consensus       463 q~~~~e  468 (623)
                      ......
T Consensus       430 ~~~~~~  435 (722)
T PF05557_consen  430 TTMNPS  435 (722)
T ss_dssp             ------
T ss_pred             ccccCc
Confidence            555433

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=97.53  E-value=0.25  Score=55.25  Aligned_cols=135  Identities=28%  Similarity=0.389  Sum_probs=83.5

Q ss_pred             hhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHH-----
Q 006962          324 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIE-----  398 (623)
Q Consensus       324 ~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIe-----  398 (623)
                      .+...+.+++..+...|.+|++.+.+.|.++..+...+.-..+.+=.+......-        +.++.....++.     
T Consensus       281 ~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------e~e~~l~~~el~~~~ee  352 (511)
T PF09787_consen  281 QERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT--------EAELRLYYQELYHYREE  352 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch--------HHHHHHHHHHHHHHHHH
Confidence            3566677788888888888888888888888766655543333222222211111        222222222222     


Q ss_pred             ------HHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHH
Q 006962          399 ------ELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEML  472 (623)
Q Consensus       399 ------ELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~L  472 (623)
                            .+-..+.+||+|+|.+       ...+.........++++       .-+..|...|..|.+.|..++-|+..|
T Consensus       353 ~~~~~s~~~~k~~~ke~E~q~l-------r~~l~~~~~~s~~~elE-------~rl~~lt~~Li~KQ~~lE~l~~ek~al  418 (511)
T PF09787_consen  353 LSRQKSPLQLKLKEKESEIQKL-------RNQLSARASSSSWNELE-------SRLTQLTESLIQKQTQLESLGSEKNAL  418 (511)
T ss_pred             HHHhcChHHHHHHHHHHHHHHH-------HHHHHHHhccCCcHhHH-------HHHhhccHHHHHHHHHHHHHHhhhhhc
Confidence                  2335678899998885       44444333233344544       444557778889999999999999999


Q ss_pred             HHHhchhh
Q 006962          473 KLEISKRE  480 (623)
Q Consensus       473 k~e~~k~e  480 (623)
                      ..++.+.+
T Consensus       419 ~lqlErl~  426 (511)
T PF09787_consen  419 RLQLERLE  426 (511)
T ss_pred             cccHHHHH
Confidence            98887544

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.38  E-value=0.11  Score=58.82  Aligned_cols=41  Identities=20%  Similarity=0.387  Sum_probs=38.4

Q ss_pred             HHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962          437 LNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  477 (623)
Q Consensus       437 l~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~  477 (623)
                      ...||+.+...|..|+++|-|.|..-..+....+.|+.++.
T Consensus       294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~  334 (546)
T KOG0977|consen  294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD  334 (546)
T ss_pred             HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh
Confidence            45789999999999999999999999999999999999987

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.35  E-value=0.23  Score=50.88  Aligned_cols=94  Identities=20%  Similarity=0.358  Sum_probs=70.5

Q ss_pred             HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhh--hhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006962          386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKN--LMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ  463 (623)
Q Consensus       386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~--~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq  463 (623)
                      -...+..++.++.+++..+-.-.++|.++-..|..|...|..-  .-...-..+...+..++.++..|+..+-..-.+.+
T Consensus       207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~  286 (312)
T PF00038_consen  207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ  286 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence            4455678888899999999999999999999999999888621  11223345677788888888888888888888888


Q ss_pred             hHHHhhHHHHHHhchh
Q 006962          464 NISEENEMLKLEISKR  479 (623)
Q Consensus       464 ~~~~ene~Lk~e~~k~  479 (623)
                      .|+.-.-.|-.||..|
T Consensus       287 ~Ll~~K~~Ld~EIatY  302 (312)
T PF00038_consen  287 ELLDVKLALDAEIATY  302 (312)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHH
Confidence            8777777776666533

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.32  E-value=0.26  Score=50.59  Aligned_cols=89  Identities=22%  Similarity=0.264  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhh
Q 006962          241 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKEN  320 (623)
Q Consensus       241 ~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~  320 (623)
                      .++..+.......+..++.+...+.-.+.+|..+|+.-+++...||..+..++....                       
T Consensus       198 ~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~-----------------------  254 (312)
T PF00038_consen  198 EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD-----------------------  254 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred             ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH-----------------------
Confidence            555555556666677777777777777777777777777777777777777776443                       


Q ss_pred             hhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhh
Q 006962          321 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN  355 (623)
Q Consensus       321 ~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~q  355 (623)
                         .+...+...+..+..+|.+||..+..--..|+
T Consensus       255 ---~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~  286 (312)
T PF00038_consen  255 ---EEREEYQAEIAELEEELAELREEMARQLREYQ  286 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence               12333566777788888888888877777775

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.27  E-value=0.15  Score=57.85  Aligned_cols=89  Identities=22%  Similarity=0.352  Sum_probs=70.4

Q ss_pred             HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhH
Q 006962          386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNI  465 (623)
Q Consensus       386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~  465 (623)
                      ...||++....|..|++.|-|-|+.-+.+...-+.|+..+...     -.-.+..|..++..|..++...-..-.|||.|
T Consensus       294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~-----~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L  368 (546)
T KOG0977|consen  294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDED-----QRSFEQALNDKDAEIAKMREECQQLSVELQKL  368 (546)
T ss_pred             HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhh-----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            4478999999999999999999998888888888887777643     23456677777778888888777777788888


Q ss_pred             HHhhHHHHHHhchh
Q 006962          466 SEENEMLKLEISKR  479 (623)
Q Consensus       466 ~~ene~Lk~e~~k~  479 (623)
                      +.=+-+|-.||..|
T Consensus       369 lD~ki~Ld~EI~~Y  382 (546)
T KOG0977|consen  369 LDTKISLDAEIAAY  382 (546)
T ss_pred             hchHhHHHhHHHHH
Confidence            88888888777643

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.20  E-value=0.24  Score=56.74  Aligned_cols=185  Identities=21%  Similarity=0.240  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccc
Q 006962          234 TQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDL  313 (623)
Q Consensus       234 Aqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~  313 (623)
                      .+.+.+ .++..+|+.....|+.+..+...+...+.++..++++.+.....||..+.-.. .+.              ++
T Consensus       325 ~~~~el-~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~-k~~--------------~l  388 (594)
T PF05667_consen  325 EQEQEL-EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK-KTV--------------EL  388 (594)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--------------HH
Confidence            445555 88888899999999999999999999999999999999999888887776333 222              01


Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHH---HHHHH
Q 006962          314 GQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVE---LEAEL  390 (623)
Q Consensus       314 ~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~E---LeaEL  390 (623)
                      ...+..     -...|+.=+.....-+..|....+....-+-+||..+-.              ..+.++.+   .-.++
T Consensus       389 L~d~e~-----ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~--------------~~~~~~~e~~~~~~~i  449 (594)
T PF05667_consen  389 LPDAEE-----NIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKE--------------KASNRESESKQKLQEI  449 (594)
T ss_pred             hcCcHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHhhcchHHHHHHHHH
Confidence            111111     124466666677777777777777777766666665532              22222222   34678


Q ss_pred             HhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHH
Q 006962          391 QKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKA  453 (623)
Q Consensus       391 Kk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa  453 (623)
                      +.+...+.++...+-.||-....+..+++.+.-.+....=+.|..|+.+-++|-+.+|...=.
T Consensus       450 k~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~  512 (594)
T PF05667_consen  450 KELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILS  512 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999988888899999999999998887776433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.12  E-value=1.2  Score=54.61  Aligned_cols=28  Identities=21%  Similarity=0.392  Sum_probs=14.6

Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHhhhh
Q 006962          329 LEEELSSLKSEVGQLRSALEIAETKLNE  356 (623)
Q Consensus       329 Le~EL~s~ksEIeeLRsaLe~~Etr~qE  356 (623)
                      ...++...+..+..|+......+.++.+
T Consensus       647 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~  674 (1201)
T PF12128_consen  647 AEQELKQAEQDLQRLKNEREQLKQEIEE  674 (1201)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555543

>PRK11637 AmiB activator; Provisional

Probab=97.06  E-value=0.63  Score=50.52  Aligned_cols=83  Identities=17%  Similarity=0.199  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHH----HHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHh
Q 006962          177 LQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETIS----LMENMKNQLRESKESETQAQALARETLLQLETAKL  252 (623)
Q Consensus       177 iq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~----lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~aka  252 (623)
                      +.++-.-+.....+....+..-..+..+|...+..+...+.    ++..+..+..++.....+-+.++..+..++..-.+
T Consensus       154 ~~r~~~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~  233 (428)
T PRK11637        154 GERILAYFGYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQ  233 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444455555566666666666666665543333    22233333333333333333333444333333333


Q ss_pred             HHHHHHH
Q 006962          253 SVEALRA  259 (623)
Q Consensus       253 tve~L~a  259 (623)
                      .+..|..
T Consensus       234 ~l~~l~~  240 (428)
T PRK11637        234 QLSELRA  240 (428)
T ss_pred             HHHHHHH
Confidence            3333333

>PF13514 AAA_27: AAA domain

Probab=97.05  E-value=1.3  Score=53.71  Aligned_cols=110  Identities=19%  Similarity=0.224  Sum_probs=62.0

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhc-hHHHHHHHHHHHHhhccCC-CCc-----------ccccccCC
Q 006962          513 EEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQ-SDQWRKAAEAAASMLSTGN-NGK-----------CMERSGSI  579 (623)
Q Consensus       513 ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQ-seQWRKAAeaAaa~Ls~g~-ng~-----------~~er~gs~  579 (623)
                      ++...-.....++.++.-+...|..-|+.-+++.|-. -+.=-+.|....+.|++|. .|-           +|.|++..
T Consensus       940 ~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~p~vl~~As~~f~~LT~G~Y~~l~~d~d~~~~~l~~~~~~G~ 1019 (1111)
T PF13514_consen  940 QEREEAEAELEELAEEWAALRLAAELLEEAIERYREERQPPVLARASEYFSRLTGGRYSRLRVDEDGDKPVLVVVRADGE 1019 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCCceeeeccccCcccceEEecCCe
Confidence            3444444555566666667777777888888888753 2455556777788887775 111           12222111


Q ss_pred             CCCCC--C------------------C-CCCCCCCC-CCCcchhhhhhccCchhhHhhhhhcCCC
Q 006962          580 DSNYN--P------------------I-TGKIPLPY-SDDIDDDLLKKKNGNVLKKIGVLWKKPQ  622 (623)
Q Consensus       580 d~~~~--~------------------~-~g~~~sp~-~dd~dd~~~kkkng~~lk~~g~LWKK~~  622 (623)
                      --+.+  +                  + .+...-|| +||..--|--.|-..||+.|+.|=++.|
T Consensus      1020 ~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~Q 1084 (1111)
T PF13514_consen 1020 RVPVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRRQ 1084 (1111)
T ss_pred             EeeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCCe
Confidence            10000  0                  1 12344455 3766655666667788888888765543

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.98  E-value=1.6  Score=53.57  Aligned_cols=190  Identities=21%  Similarity=0.281  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHHhhHHHHHHHhhhhhccHHH------------
Q 006962          102 AQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAA------------  169 (623)
Q Consensus       102 a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~~wqsEleavq~qhs~Dsaa------------  169 (623)
                      ...++-..+..+.....+|+..+.+...+-   ...+-++.+. ..+.-.|+.+++.++.++..=...            
T Consensus       311 ~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye---~~~i~~~~~~-~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~  386 (1201)
T PF12128_consen  311 LNKELSALNADLARIKSELDEIEQQKKDYE---DADIEQLIAR-VDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLK  386 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566667777788887766655542   2223333332 234567888888877765432222            


Q ss_pred             --HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHH------------HHHHhhhcHHHHHHHHHHHHHHhhHhhhhH-
Q 006962          170 --LASAL-NELQQLKAQFEMVAESEAAQTKNAESAHL------------ELQSLKGNLIETISLMENMKNQLRESKESE-  233 (623)
Q Consensus       170 --L~sal-~Eiq~LK~qL~~~~esea~al~~Ae~a~~------------ELe~lk~~laetl~lvE~lKs~l~e~keSe-  233 (623)
                        |.... ..+..+..++....+..+......+....            .++.++.........+..++.++....... 
T Consensus       387 ~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e  466 (1201)
T PF12128_consen  387 QKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEE  466 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHH
Confidence              11111 12333344444444444444333333321            112222222222223333333333222111 


Q ss_pred             -----HHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhh
Q 006962          234 -----TQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD  295 (623)
Q Consensus       234 -----Aqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~  295 (623)
                           ..+..-++....++..+...+..++.+...+.........+|...+.++..++..+..|+.-
T Consensus       467 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~  533 (1201)
T PF12128_consen  467 EKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQ  533 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 11222224444555566666677777777777777777777777777777777777777743

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.90  E-value=1.9  Score=53.01  Aligned_cols=96  Identities=21%  Similarity=0.266  Sum_probs=63.7

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHH---HHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHH
Q 006962          204 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALA---RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRT  280 (623)
Q Consensus       204 ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~---~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~  280 (623)
                      ||+.|-..|.+.++-+-+.-..|...+-.-++|..|.   ....+.-+..+.++++.+.-...+..+++-....+.++-+
T Consensus      1512 qi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~ 1591 (1758)
T KOG0994|consen 1512 QIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADR 1591 (1758)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            6666777776666655555555666665556665554   3334444555666677777777777777777788888777


Q ss_pred             HHHhHHHHHHHHhhhhhcc
Q 006962          281 RINLLEGLVSKLEADTSNA  299 (623)
Q Consensus       281 r~~~LE~lvskLq~~~a~~  299 (623)
                      -+.-.++++.+++..++.+
T Consensus      1592 ~~~~a~~~l~kv~~~t~~a 1610 (1758)
T KOG0994|consen 1592 DIRLAQQLLAKVQEETAAA 1610 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7777788888888766643

>PRK11637 AmiB activator; Provisional

Probab=96.77  E-value=0.39  Score=52.10  Aligned_cols=82  Identities=18%  Similarity=0.322  Sum_probs=42.6

Q ss_pred             HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006962          384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ  463 (623)
Q Consensus       384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq  463 (623)
                      .++-.+++.....+...++.|-++-.+|+.+..+.+.-+            .+|..........+..|+.++-..+.+|.
T Consensus       169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k------------~~L~~~k~e~~~~l~~L~~~~~~~~~~l~  236 (428)
T PRK11637        169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQ------------QKLEQARNERKKTLTGLESSLQKDQQQLS  236 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555544444444443333322            33344444444555666666666666666


Q ss_pred             hHHHhhHHHHHHhc
Q 006962          464 NISEENEMLKLEIS  477 (623)
Q Consensus       464 ~~~~ene~Lk~e~~  477 (623)
                      .+..+...|...|.
T Consensus       237 ~l~~~~~~L~~~I~  250 (428)
T PRK11637        237 ELRANESRLRDSIA  250 (428)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666655554

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.55  E-value=1.1  Score=49.30  Aligned_cols=49  Identities=10%  Similarity=0.167  Sum_probs=22.4

Q ss_pred             HHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHh
Q 006962          245 LQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE  293 (623)
Q Consensus       245 ~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq  293 (623)
                      .+++.-+..+..|..+.....+.++.+..++...+..+..++....-+.
T Consensus       234 ~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~  282 (562)
T PHA02562        234 AEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYE  282 (562)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333333334444433333344444455555555555555555554443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.50  E-value=0.043  Score=52.10  Aligned_cols=112  Identities=23%  Similarity=0.353  Sum_probs=76.9

Q ss_pred             HHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHH
Q 006962          446 QAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARM  525 (623)
Q Consensus       446 ~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~  525 (623)
                      ..+..|...+..+|.++.+|..-|..|-.++.+.+.......+.+...-.....+| -.--|+..|.+|++.+..+....
T Consensus        21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~   99 (143)
T PF12718_consen   21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-QLNRRIQLLEEELEEAEKKLKET   99 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHH
Confidence            34444445555566666666666666666665544433322222221111222223 56678999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHH
Q 006962          526 AEQLEAAQSANCEAEAELRRLKVQSDQWRKAAE  558 (623)
Q Consensus       526 ~EqL~aaq~a~~elEaElrrLrVQseQWRKAAe  558 (623)
                      +++|+-+...-+.+|-=++.|--+.++|=+=-+
T Consensus       100 ~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e  132 (143)
T PF12718_consen  100 TEKLREADVKAEHFERKVKALEQERDQWEEKYE  132 (143)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            999999999999999999999999999966444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.41  E-value=0.015  Score=66.93  Aligned_cols=84  Identities=21%  Similarity=0.211  Sum_probs=0.0

Q ss_pred             HHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHH
Q 006962          253 SVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEE  332 (623)
Q Consensus       253 tve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~E  332 (623)
                      .+..|+-+-..+.+.++++.+++..-+..+..|+..+.++...........              ..  .......|+--
T Consensus       344 ~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~--------------~~--~~~~~~RLerq  407 (722)
T PF05557_consen  344 ALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASL--------------EA--LKKLIRRLERQ  407 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH--HHHHHHHHHHH
Confidence            345666666777777777777777777777777776666664433222111              00  11122335555


Q ss_pred             HhhchhhHHHHHHHHHHHHH
Q 006962          333 LSSLKSEVGQLRSALEIAET  352 (623)
Q Consensus       333 L~s~ksEIeeLRsaLe~~Et  352 (623)
                      ..-+.-||+-||+-|..-++
T Consensus       408 ~~L~~kE~d~LR~~L~syd~  427 (722)
T PF05557_consen  408 KALATKERDYLRAQLKSYDK  427 (722)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            66666788888888886444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.40  E-value=2.8  Score=48.56  Aligned_cols=253  Identities=25%  Similarity=0.309  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhH-----hhhhHHHHHHHH----HHH
Q 006962          173 ALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRE-----SKESETQAQALA----RET  243 (623)
Q Consensus       173 al~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e-----~keSeAqa~aL~----~E~  243 (623)
                      +-.|+++||.+|....    ..+.+-.--+..+..|+..+.+...+++...-+...     |.+.-+...+.+    ..+
T Consensus       119 ~~~e~~~lk~~lee~~----~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~  194 (629)
T KOG0963|consen  119 ASEENEELKEELEEVN----NELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNL  194 (629)
T ss_pred             hhhhHHHHHHHHHHHH----HHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777888777644    355566666678888888888877777665543332     333333333333    556


Q ss_pred             HHHHHHhHhHHHHHHH------------------hhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhcccccccc
Q 006962          244 LLQLETAKLSVEALRA------------------EGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ  305 (623)
Q Consensus       244 ~~QLE~akatve~L~a------------------dg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~  305 (623)
                      ..|++.+..+|..|.+                  +..--.+.|+-+-.+|+.+..|+..||..+..|...++.+..+..+
T Consensus       195 ~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~  274 (629)
T KOG0963|consen  195 QEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKL  274 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            6777777777755522                  1333345788888999999999999999999998766544322100


Q ss_pred             CCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHH
Q 006962          306 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVE  385 (623)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~E  385 (623)
                                     ....+++.+..-|++..++|.+|=..+.--++-++++...+-.+|.                  .
T Consensus       275 ---------------~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~------------------~  321 (629)
T KOG0963|consen  275 ---------------AKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQIS------------------A  321 (629)
T ss_pred             ---------------ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H
Confidence                           1123556677777888888888888888888888888877776665                  5


Q ss_pred             HHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhh--HHHHHHHHHhhhhhHHHHh
Q 006962          386 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKL--AQAVEDLKANLMDKETELQ  463 (623)
Q Consensus       386 LeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~--~~~v~~LKa~L~dke~elq  463 (623)
                      |+.+|+.+++.|++|+..|       ++-++=++     |+++++.=+.-++-.---..  ++.+.-|--.|.+|+..||
T Consensus       322 le~~l~~~~~~leel~~kL-------~~~sDYee-----IK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq  389 (629)
T KOG0963|consen  322 LEKELKAKISELEELKEKL-------NSRSDYEE-----IKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQ  389 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------hhhccHHH-----HHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhh
Confidence            8899999999999998654       44333332     33332222222222000000  0334455566777777655


Q ss_pred             hHHHhhHHHHHHhc
Q 006962          464 NISEENEMLKLEIS  477 (623)
Q Consensus       464 ~~~~ene~Lk~e~~  477 (623)
                         .||..|+..-.
T Consensus       390 ---~e~a~Lr~~n~  400 (629)
T KOG0963|consen  390 ---NENASLRVANS  400 (629)
T ss_pred             ---HHHHHHhcccc
Confidence               46666755443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.31  E-value=4.1  Score=49.59  Aligned_cols=183  Identities=22%  Similarity=0.277  Sum_probs=111.5

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhH-------HHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhh
Q 006962          263 KAIEAYSSIASELERSRTRINLL-------EGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSS  335 (623)
Q Consensus       263 Ka~e~~~sl~~eLe~S~~r~~~L-------E~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s  335 (623)
                      +..+.|..+..+++.++.++...       +..+++++.++.....                   ...+..+.|+.+++.
T Consensus       738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~-------------------~re~rlkdl~keik~  798 (1174)
T KOG0933|consen  738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKA-------------------NRERRLKDLEKEIKT  798 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-------------------hhHhHHHHHHHHHHH
Confidence            44555555555555555555544       4555566655543321                   123467779999999


Q ss_pred             chhhHHHHHHHHHHHHHhh---hhhhhhhHHHHhhHHHHHHHHhhhcccch---HHHH-------HHHHhhhhhHHHHHH
Q 006962          336 LKSEVGQLRSALEIAETKL---NEGQIQSTVKIKSAFEQLEQIKHQSGLRE---VELE-------AELQKAKSDIEELKA  402 (623)
Q Consensus       336 ~ksEIeeLRsaLe~~Etr~---qEE~i~st~~i~~aye~~e~~Kses~qRE---~ELe-------aELKk~ksdIeELKA  402 (623)
                      ++..+++-+..++-.+-.|   +=|.++++-.|.+.--++++.....+.=+   ++|.       ...+++-+.|.+.|+
T Consensus       799 ~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~  878 (1174)
T KOG0933|consen  799 AKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKA  878 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence            9999999999999999888   35556666666665555555554333222   2233       345566677888899


Q ss_pred             hhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHH
Q 006962          403 NLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNIS  466 (623)
Q Consensus       403 ~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~  466 (623)
                      +++|--|++-++.-.-+.+..++...  .-.-..|..++.++..+-+..+..+..+..+..-|.
T Consensus       879 k~~~~dt~i~~~~~~~e~~~~e~~~~--~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~  940 (1174)
T KOG0933|consen  879 KQRDIDTEISGLLTSQEKCLSEKSDG--ELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG  940 (1174)
T ss_pred             HHHhhhHHHhhhhhHHHHHHHHhhcc--cchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence            99999999988888777777776411  112234455555555555555554444444444333

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.30  E-value=1.5  Score=48.23  Aligned_cols=33  Identities=15%  Similarity=0.315  Sum_probs=14.2

Q ss_pred             HHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962          445 AQAVEDLKANLMDKETELQNISEENEMLKLEIS  477 (623)
Q Consensus       445 ~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~  477 (623)
                      ...+.+++..+-.....+..+..++..|+.+|.
T Consensus       336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~  368 (562)
T PHA02562        336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIE  368 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.17  E-value=3.4  Score=47.36  Aligned_cols=135  Identities=25%  Similarity=0.272  Sum_probs=80.2

Q ss_pred             HHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhh
Q 006962          385 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQN  464 (623)
Q Consensus       385 ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~  464 (623)
                      ..-++|-.+.-+.+.|+..|.|-..+|+.-    .+=..       ..++ -|........+.|..|+..+..++.-||.
T Consensus       322 rt~aeLh~aRLe~aql~~qLad~~l~lke~----~~q~~-------qEk~-~l~~~~e~~k~~ie~L~~el~~~e~~lqE  389 (546)
T PF07888_consen  322 RTMAELHQARLEAAQLKLQLADASLELKEG----RSQWA-------QEKQ-ALQHSAEADKDEIEKLSRELQMLEEHLQE  389 (546)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHH-------HHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            345667777778888888888766655331    10011       1111 12222223347889999999999999999


Q ss_pred             HHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHh
Q 006962          465 ISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELR  544 (623)
Q Consensus       465 ~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElr  544 (623)
                      =-.|+..|..+|++ +.+-+.|      .+       .|    .-..-.|+..+-+.+..=+|||.   .-+-+|=-.|+
T Consensus       390 er~E~qkL~~ql~k-e~D~n~v------ql-------sE----~~rel~Elks~lrv~qkEKEql~---~EkQeL~~yi~  448 (546)
T PF07888_consen  390 ERMERQKLEKQLGK-EKDCNRV------QL-------SE----NRRELQELKSSLRVAQKEKEQLQ---EEKQELLEYIE  448 (546)
T ss_pred             HHHHHHHHHHHHHH-hhhhhHH------HH-------HH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            99999999999984 2211111      11       11    11222345555555556667774   36777888888


Q ss_pred             hhhhchHH
Q 006962          545 RLKVQSDQ  552 (623)
Q Consensus       545 rLrVQseQ  552 (623)
                      +|+--.+.
T Consensus       449 ~Le~r~~~  456 (546)
T PF07888_consen  449 RLEQRLDK  456 (546)
T ss_pred             HHHHHHHH
Confidence            88755543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.92  E-value=1.7  Score=49.94  Aligned_cols=176  Identities=24%  Similarity=0.260  Sum_probs=104.6

Q ss_pred             hHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhH
Q 006962          250 AKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHL  329 (623)
Q Consensus       250 akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~L  329 (623)
                      +..+|+.|+.+...+...|.+...+      .++.-+|=+.-|.....                        -...+++|
T Consensus         6 aeq~ve~lr~eierLT~el~q~t~e------~~qaAeyGL~lLeeK~~------------------------Lkqq~eEl   55 (772)
T KOG0999|consen    6 AEQEVEKLRQEIERLTEELEQTTEE------KIQAAEYGLELLEEKED------------------------LKQQLEEL   55 (772)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH------------------------HHHHHHHH
Confidence            4567889999988888777655443      44444554444443222                        12256679


Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHhhh------hhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHh
Q 006962          330 EEELSSLKSEVGQLRSALEIAETKLN------EGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN  403 (623)
Q Consensus       330 e~EL~s~ksEIeeLRsaLe~~Etr~q------EE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~  403 (623)
                      ++++..++.|+++++.+|--.-+..+      +++..+-++--.|-|      -.|.++-.+|+.+||++...+.     
T Consensus        56 eaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE------~~yl~kI~eleneLKq~r~el~-----  124 (772)
T KOG0999|consen   56 EAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKE------EYYLQKILELENELKQLRQELT-----  124 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHH-----
Confidence            99999999999999999986655553      566655544322221      2455666777888877766555     


Q ss_pred             hcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962          404 LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  477 (623)
Q Consensus       404 LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~  477 (623)
                               ++.+||+.|-........+.  .-++.+-.++.++|.++|-+=--.=.+.--+.+||=.|.++..
T Consensus       125 ---------~~q~E~erl~~~~sd~~e~~--~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs  187 (772)
T KOG0999|consen  125 ---------NVQEENERLEKVHSDLKESN--AAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVS  187 (772)
T ss_pred             ---------HHHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence                     44556665544332211111  3344555666777777775322222233445667766666654

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=95.86  E-value=2.3  Score=49.93  Aligned_cols=108  Identities=24%  Similarity=0.361  Sum_probs=61.4

Q ss_pred             cccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhh
Q 006962          379 SGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDK  458 (623)
Q Consensus       379 s~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dk  458 (623)
                      +.+|..+|+.|++++..++...-..++.-|.++|.+-.-+                       +....|+..|-.     
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~-----------------------~e~~~~~e~L~~-----  594 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE-----------------------KESEKDTEVLMS-----  594 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhhhhhHHHHHH-----
Confidence            3457788888887776665555555554444443221110                       111234444544     


Q ss_pred             HHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q 006962          459 ETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCE  538 (623)
Q Consensus       459 e~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~e  538 (623)
                        .|+.+.+.|..|.+-|.-    .+.++=              +-+.-||-              ..-||+-++...-.
T Consensus       595 --aL~amqdk~~~LE~sLsa----EtriKl--------------dLfsaLg~--------------akrq~ei~~~~~~~  640 (697)
T PF09726_consen  595 --ALSAMQDKNQHLENSLSA----ETRIKL--------------DLFSALGD--------------AKRQLEIAQGQLRK  640 (697)
T ss_pred             --HHHHHHHHHHHHHHhhhH----HHHHHH--------------HHHHHHHH--------------HHHHHHHHHHHHHH
Confidence              788888999988776650    011111              11222221              23578888888888


Q ss_pred             HHHHHhhhhh
Q 006962          539 AEAELRRLKV  548 (623)
Q Consensus       539 lEaElrrLrV  548 (623)
                      -|.|+.-||-
T Consensus       641 ~d~ei~~lk~  650 (697)
T PF09726_consen  641 KDKEIEELKA  650 (697)
T ss_pred             HHHHHHHHHH
Confidence            8999999983

; GO: 0016021 integral to membrane

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.81  E-value=2.5  Score=42.79  Aligned_cols=97  Identities=19%  Similarity=0.305  Sum_probs=42.9

Q ss_pred             hcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhh
Q 006962          378 QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMD  457 (623)
Q Consensus       378 es~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~d  457 (623)
                      +..+|-.-++..|.++..-++.+-..+.+-|.+|..+.  |..=.+++.....+.++..+...++.+...+.+.-.....
T Consensus       117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~--~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~  194 (237)
T PF00261_consen  117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVG--NNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEF  194 (237)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH--HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555555555555555555555555555541  2222333333333444444444444444444444444444


Q ss_pred             hHHHHhhHHHhhHHHHHHh
Q 006962          458 KETELQNISEENEMLKLEI  476 (623)
Q Consensus       458 ke~elq~~~~ene~Lk~e~  476 (623)
                      -|..+..+..++..|..+|
T Consensus       195 aE~~v~~Le~~id~le~eL  213 (237)
T PF00261_consen  195 AERRVKKLEKEIDRLEDEL  213 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444443333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.70  E-value=9.3  Score=48.57  Aligned_cols=270  Identities=19%  Similarity=0.225  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcH-------HHH-HHHHHHHHHHhhHhhhhHHHHHHHHH
Q 006962          170 LASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNL-------IET-ISLMENMKNQLRESKESETQAQALAR  241 (623)
Q Consensus       170 L~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~l-------aet-l~lvE~lKs~l~e~keSeAqa~aL~~  241 (623)
                      |..+-..+..+-.+|.....-.-++..++..+.-.|..|+.=+       .+| -.-|+.+..++..+.++..-+... .
T Consensus       839 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~y~~~~-~  917 (1486)
T PRK04863        839 LRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQH-G  917 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            6666666777777777776666666666666666666666543       222 245677888888899888887777 7


Q ss_pred             HHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhh
Q 006962          242 ETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQ  321 (623)
Q Consensus       242 E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~  321 (623)
                      ....+||..-..++.-..+-.-+...|.+....+.+...++-.|.+++..-.-              -.|.+....-. .
T Consensus       918 ~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~y~~~~~~l~-~  982 (1486)
T PRK04863        918 NALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAH--------------FSYEDAAEMLA-K  982 (1486)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------ccHHHHHhHhh-c
Confidence            77777777766666555555555556666666666666777776666554331              11332211000 0


Q ss_pred             hhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHH
Q 006962          322 DTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELK  401 (623)
Q Consensus       322 ~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELK  401 (623)
                      .+.-...|+..+..+..+-..+|..+..++..|+.=+... ..+.++|.              .+...|+.++..+.+|=
T Consensus       983 ~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l-~slksslq--------------~~~e~L~E~eqe~~~~g 1047 (1486)
T PRK04863        983 NSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVL-ASLKSSYD--------------AKRQMLQELKQELQDLG 1047 (1486)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------------HHHHHHHHHHHHHHHcC
Confidence            1112223566666666666666666666665554221111 11111111              22222333333222221


Q ss_pred             HhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHH
Q 006962          402 ANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKL  474 (623)
Q Consensus       402 A~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~  474 (623)
                      -. .|-..|.+--+.. +.|...+..  .-.+-..|...+.....+|..|+.+|.+.+.++..+.++...+|.
T Consensus      1048 ~~-~~~~~~~~~~~~~-~~l~~~l~~--~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~ 1116 (1486)
T PRK04863       1048 VP-ADSGAEERARARR-DELHARLSA--NRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116 (1486)
T ss_pred             CC-CCccHHHHHHHhH-HHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00 1222222222222 333333332  234567888888888999999999999999999888888887776

>PRK01156 chromosome segregation protein; Provisional

Probab=95.62  E-value=6.7  Score=46.33  Aligned_cols=23  Identities=17%  Similarity=0.369  Sum_probs=11.0

Q ss_pred             hhhHHHHHhhchhhHHHHHHHHH
Q 006962          326 SKHLEEELSSLKSEVGQLRSALE  348 (623)
Q Consensus       326 ~~~Le~EL~s~ksEIeeLRsaLe  348 (623)
                      .+.++.+++.+..++.+|+..+.
T Consensus       471 i~~~~~~i~~l~~~i~~l~~~~~  493 (895)
T PRK01156        471 INHYNEKKSRLEEKIREIEIEVK  493 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555555555554443

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=95.61  E-value=8.1  Score=47.23  Aligned_cols=83  Identities=17%  Similarity=0.143  Sum_probs=60.0

Q ss_pred             HHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHH--HHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhh
Q 006962          218 LMENMKNQLRESKESETQAQALARETLLQLETAKLSV--EALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD  295 (623)
Q Consensus       218 lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatv--e~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~  295 (623)
                      -++-||..+.++++.-+--.+-.+=+.-||+--++.-  -+|.++-.+++--+.-++++.+.=+.+...|-...++|+..
T Consensus       258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q  337 (1195)
T KOG4643|consen  258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ  337 (1195)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            3455888888888774433333344555665444433  56778888888888889999999999999999999999976


Q ss_pred             hhccc
Q 006962          296 TSNAN  300 (623)
Q Consensus       296 ~a~~~  300 (623)
                      .++.+
T Consensus       338 ~eqL~  342 (1195)
T KOG4643|consen  338 KEQLD  342 (1195)
T ss_pred             HHHhh
Confidence            66544

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.41  E-value=8.1  Score=48.48  Aligned_cols=39  Identities=18%  Similarity=0.403  Sum_probs=33.3

Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 006962           67 RPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQD  105 (623)
Q Consensus        67 r~~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~e  105 (623)
                      |..||.+|+.+|..+...+..+..++......+..+..+
T Consensus       740 R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e  778 (1353)
T TIGR02680       740 RLRRIAELDARLAAVDDELAELARELRALGARQRALADE  778 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556799999999999999999999998887777766655

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.30  E-value=3.8  Score=41.49  Aligned_cols=30  Identities=20%  Similarity=0.251  Sum_probs=18.8

Q ss_pred             HHhhchhhHHHHHHHHHHHHHhhhhhhhhh
Q 006962          332 ELSSLKSEVGQLRSALEIAETKLNEGQIQS  361 (623)
Q Consensus       332 EL~s~ksEIeeLRsaLe~~Etr~qEE~i~s  361 (623)
                      .|..+...+.+.+..+.+++.+|.|=.-.+
T Consensus        93 ri~~lE~~l~ea~~~~ee~e~k~~E~~rkl  122 (237)
T PF00261_consen   93 RIEELEQQLKEAKRRAEEAERKYEEVERKL  122 (237)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555666677777777777776544433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.28  E-value=13  Score=47.44  Aligned_cols=180  Identities=21%  Similarity=0.245  Sum_probs=89.1

Q ss_pred             HHHHHHHHhhhc---ccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhh----hhhh--h---
Q 006962          368 AFEQLEQIKHQS---GLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLM----CQRE--S---  435 (623)
Q Consensus       368 aye~~e~~Kses---~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~----~~ke--~---  435 (623)
                      +...++.++.-+   .--..+|...|....+.+.++...+-+.|.+|..+....+.+......-..    +.+.  .   
T Consensus       419 ~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~  498 (1486)
T PRK04863        419 AVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVA  498 (1486)
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence            334556666655   455566777777777777777777777777777776666666655432111    1110  0   


Q ss_pred             -hH---HHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhh
Q 006962          436 -QL---NNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLL  511 (623)
Q Consensus       436 -el---~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~  511 (623)
                       ++   -.+++-+...+.-|++.|-+.+..|+.-..-+ .|-.+.+++- . ....++...+..   ..+.++       
T Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~---~~~~~~-------  565 (1486)
T PRK04863        499 RELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAE-RLLAEFCKRL-G-KNLDDEDELEQL---QEELEA-------  565 (1486)
T ss_pred             HHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh-C-CCCCCHHHHHHH---HHHHHH-------
Confidence             11   11233444555666666666666444332222 2223333211 0 122222221111   112222       


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 006962          512 MEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAAS  562 (623)
Q Consensus       512 ~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaAaa  562 (623)
                        +++.-+.-.+.+.++....+.--.+|-..+.+|.-+..+|.+|=+|..-
T Consensus       566 --~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~  614 (1486)
T PRK04863        566 --RLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALAR  614 (1486)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHH
Confidence              2222222333334444444444556777777777777777777666554

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.17  E-value=12  Score=46.56  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=22.9

Q ss_pred             hhhhhHHHHHHhhh---cHHHHHHHHHHHHHHhhHhh
Q 006962          197 NAESAHLELQSLKG---NLIETISLMENMKNQLRESK  230 (623)
Q Consensus       197 ~Ae~a~~ELe~lk~---~laetl~lvE~lKs~l~e~k  230 (623)
                      |..+...+|+...-   .+.+++.+++..+..+....
T Consensus       568 ~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~  604 (1317)
T KOG0612|consen  568 HSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKEN  604 (1317)
T ss_pred             hhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence            45555566666665   57888888888877766543

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.06  E-value=4  Score=43.82  Aligned_cols=209  Identities=20%  Similarity=0.230  Sum_probs=107.8

Q ss_pred             HHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHh----hhh----hccccccccCCC----
Q 006962          241 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE----ADT----SNANRNLSQNCS----  308 (623)
Q Consensus       241 ~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq----~~~----a~~~~~~~~~~~----  308 (623)
                      ++..+-|+.|-.-.-+|..--..+.+.+..+.-.|..+.-.|.-|--.|+.--    +-+    -+..++.++.+-    
T Consensus        72 eEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~  151 (306)
T PF04849_consen   72 EEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNE  151 (306)
T ss_pred             HHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccc
Confidence            45555555554444555555555555555565566555555555444433211    100    011111111000    


Q ss_pred             CCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHH
Q 006962          309 GDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEA  388 (623)
Q Consensus       309 ~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELea  388 (623)
                      ........+-...-++-+..|+.|-..++.|..+|+..-...|-+.|-=...+.=++..           .+..-+.|..
T Consensus       152 ~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~-----------An~qia~Lse  220 (306)
T PF04849_consen  152 SSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSE-----------ANQQIASLSE  220 (306)
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-----------cchhHHHHHH
Confidence            00000011111223334555777888888888888765443333222111112112222           2222233444


Q ss_pred             HH-------HhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHH
Q 006962          389 EL-------QKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETE  461 (623)
Q Consensus       389 EL-------Kk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~e  461 (623)
                      +|       .+--.+|.-|-+.+.|.+..++.++-||+.|...+.....+  ...|.++|.-+.+--++.-+-|.+-..+
T Consensus       221 ELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~--Q~~L~aEL~elqdkY~E~~~mL~EaQEE  298 (306)
T PF04849_consen  221 ELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKES--QRQLQAELQELQDKYAECMAMLHEAQEE  298 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43       34566899999999999999999999999999999744333  3557777666655555555544444333


Q ss_pred             H
Q 006962          462 L  462 (623)
Q Consensus       462 l  462 (623)
                      |
T Consensus       299 l  299 (306)
T PF04849_consen  299 L  299 (306)
T ss_pred             H
Confidence            3

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=94.85  E-value=11  Score=44.46  Aligned_cols=24  Identities=13%  Similarity=0.282  Sum_probs=16.1

Q ss_pred             hhhhHHHHHhhchhhHHHHHHHHH
Q 006962          325 ESKHLEEELSSLKSEVGQLRSALE  348 (623)
Q Consensus       325 e~~~Le~EL~s~ksEIeeLRsaLe  348 (623)
                      ..+-++..+.....||.+||+.|.
T Consensus       630 q~ei~~~~~~~~d~ei~~lk~ki~  653 (697)
T PF09726_consen  630 QLEIAQGQLRKKDKEIEELKAKIA  653 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455567777778888888665

; GO: 0016021 integral to membrane

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=94.74  E-value=5.4  Score=47.18  Aligned_cols=193  Identities=22%  Similarity=0.243  Sum_probs=109.5

Q ss_pred             CCchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHH
Q 006962           68 PSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQE  147 (623)
Q Consensus        68 ~~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~  147 (623)
                      |+-+++|=|-|.-  -|.+|++.||...|..|......|.++|+||.-....|...+.+...+.+-    +.=|.++...
T Consensus       252 ~~lv~DLfSEl~~--~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~----l~aL~~l~~~  325 (717)
T PF09730_consen  252 PSLVSDLFSELNL--SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQ----LDALRKLQED  325 (717)
T ss_pred             Ccccchhhhhcch--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhccc
Confidence            4557777777653  478899999999999999999999999999988887777665555544422    3333332221


Q ss_pred             hHHh--hHHHHHHH----hhhhhccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHH
Q 006962          148 TDQS--CQSELQAI----QNQHSIDSAA-------LASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIE  214 (623)
Q Consensus       148 ~d~~--wqsEleav----q~qhs~Dsaa-------L~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~lae  214 (623)
                      .+..  -.++-...    -..|..|.-.       +..+..|+..||.+|-....--+..-.++......+         
T Consensus       326 ke~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~---------  396 (717)
T PF09730_consen  326 KEQQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRL---------  396 (717)
T ss_pred             hhhhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            1110  00000000    1112233211       445666666666666543321111111222221111         


Q ss_pred             HHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHH
Q 006962          215 TISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE  276 (623)
Q Consensus       215 tl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe  276 (623)
                       ..-+..|..++..++++--+.++.+..+...|.++...+.--.+....+++++-.+.-+|-
T Consensus       397 -~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLA  457 (717)
T PF09730_consen  397 -ESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELA  457 (717)
T ss_pred             -HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence             2334555556666666555556666777777777777666666666666666666666654

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.70  E-value=16  Score=45.52  Aligned_cols=167  Identities=16%  Similarity=0.203  Sum_probs=77.8

Q ss_pred             HHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhH-----
Q 006962          385 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKE-----  459 (623)
Q Consensus       385 ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke-----  459 (623)
                      .+.++.+.....|+.|+-.+..-|.....+...++.|+..-+.-..-.+|-+-..+=..+...|..|+..++..-     
T Consensus       824 ~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q  903 (1293)
T KOG0996|consen  824 KLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQ  903 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhH
Confidence            345555666666666666666666666666666665552221100011111111011111344444544444332     


Q ss_pred             ---HHHhhHHHhhHHHHHHhchhhccCCc---cchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHH
Q 006962          460 ---TELQNISEENEMLKLEISKRELDTPN---MNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQ  533 (623)
Q Consensus       460 ---~elq~~~~ene~Lk~e~~k~e~~~~~---~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq  533 (623)
                         ..+..+.+....|...|.+......+   --.-+.-.+.-....-.+.--++-.|++++..-..+++-+...+..++
T Consensus       904 ~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~  983 (1293)
T KOG0996|consen  904 AQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAE  983 (1293)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence               23444445555555555443322110   000111122223233334444555667777666666666666677777


Q ss_pred             HhhHHHHHHHhhhhhchH
Q 006962          534 SANCEAEAELRRLKVQSD  551 (623)
Q Consensus       534 ~a~~elEaElrrLrVQse  551 (623)
                      ++..++-.++.-++-+-+
T Consensus       984 ~~~~E~k~~~~~~k~~~e 1001 (1293)
T KOG0996|consen  984 ESLKEIKKELRDLKSELE 1001 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            766666666666555443

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=94.69  E-value=12  Score=44.19  Aligned_cols=146  Identities=21%  Similarity=0.336  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHH-------HHhHHhHH
Q 006962           78 VSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQ-------KVSQETDQ  150 (623)
Q Consensus        78 l~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elq-------k~~q~~d~  150 (623)
                      +..+.-+|.+..++++..+-.+..-..-|.+|+..-..+-++|++++.-+...-..-...--+|+       ++-++.|-
T Consensus       256 ~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~  335 (786)
T PF05483_consen  256 IKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEA  335 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            45667777788888888888888778888888888888888888765544443333332222333       34444432


Q ss_pred             hhHHHHHHHhhhhhccHHHHHHHHHHHHHH-HHHHHHHHHHH-------------HHHHh----hhhhhHHHHHHhhhcH
Q 006962          151 SCQSELQAIQNQHSIDSAALASALNELQQL-KAQFEMVAESE-------------AAQTK----NAESAHLELQSLKGNL  212 (623)
Q Consensus       151 ~wqsEleavq~qhs~DsaaL~sal~Eiq~L-K~qL~~~~ese-------------a~al~----~Ae~a~~ELe~lk~~l  212 (623)
                       ---|+-.++.+|+.+++-|-.|+..++.| ..+...+...+             +.-+.    .-....++|+.|+..|
T Consensus       336 -~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L  414 (786)
T PF05483_consen  336 -QMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKIL  414 (786)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence             23477888999999999877776655432 11111111111             11111    1112236888899998


Q ss_pred             HHHHHHHHHHHH
Q 006962          213 IETISLMENMKN  224 (623)
Q Consensus       213 aetl~lvE~lKs  224 (623)
                      .+.-++++..+.
T Consensus       415 ~e~qkll~ekk~  426 (786)
T PF05483_consen  415 AEKQKLLDEKKQ  426 (786)
T ss_pred             HHHHHHHHHHHH
Confidence            887777776655

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK01156 chromosome segregation protein; Provisional

Probab=94.62  E-value=13  Score=44.09  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=15.6

Q ss_pred             hhhhhHHHHHhhchhhHHHHHHHHHH
Q 006962          324 MESKHLEEELSSLKSEVGQLRSALEI  349 (623)
Q Consensus       324 ~e~~~Le~EL~s~ksEIeeLRsaLe~  349 (623)
                      .+.+.++.+++.++.++..|+..+..
T Consensus       476 ~~i~~l~~~i~~l~~~~~~l~~~~~~  501 (895)
T PRK01156        476 EKKSRLEEKIREIEIEVKDIDEKIVD  501 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666665553

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.56  E-value=17  Score=45.25  Aligned_cols=45  Identities=11%  Similarity=0.204  Sum_probs=25.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhH-HHHHHHHHHHHHHH
Q 006962          489 NLAAEVEAARSAEKEALMKLGLLMEEADKSNR-RAARMAEQLEAAQS  534 (623)
Q Consensus       489 ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~-~~ar~~EqL~aaq~  534 (623)
                      ++...+.-++..=.+....++.+.+..++-++ |.. +.-++++.-.
T Consensus       981 e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~ 1026 (1293)
T KOG0996|consen  981 EAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAING 1026 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHH
Confidence            55555555665556666666666666655555 333 5555544433

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.32  E-value=15  Score=43.64  Aligned_cols=212  Identities=23%  Similarity=0.263  Sum_probs=130.1

Q ss_pred             hhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHH-HHHHhHhHHHHHHHhhhHHHHHHhhhHHHHH
Q 006962          198 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL-QLETAKLSVEALRAEGMKAIEAYSSIASELE  276 (623)
Q Consensus       198 Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~-QLE~akatve~L~adg~Ka~e~~~sl~~eLe  276 (623)
                      +++++--|.+|-..+--..+-=+++|.+...+++.=|      ..+.+ .|-...--|+.|-++|.|+.-          
T Consensus       404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela------~~l~~DeLaEkdE~I~~lm~EGEkLSK----------  467 (961)
T KOG4673|consen  404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELA------AALLKDELAEKDEIINQLMAEGEKLSK----------  467 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHHHhHH----------
Confidence            3344444444444443334444555555555543311      11111 122233457899999999862          


Q ss_pred             HHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHH--hh
Q 006962          277 RSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAET--KL  354 (623)
Q Consensus       277 ~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Et--r~  354 (623)
                         -.++- ..+|.||.+..--++                      +... .+..-+..+-+|...|++-|.++|.  ++
T Consensus       468 ---~ql~q-s~iIkKLRAk~ke~e----------------------tl~~-K~ge~i~~L~sE~~~lk~il~~Kee~Ek~  520 (961)
T KOG4673|consen  468 ---KQLAQ-SAIIKKLRAKIKEAE----------------------TLEE-KKGELITKLQSEENKLKSILRDKEETEKL  520 (961)
T ss_pred             ---HHHHH-HHHHHHHHHHhhhhh----------------------HHHH-HhhhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence               23333 567777775422111                      0011 1223444666777888888887764  22


Q ss_pred             hhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 006962          355 NEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRE  434 (623)
Q Consensus       355 qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke  434 (623)
                      +-|+|                        +.+.+++++-+.+..++++..-|+|..+..|.--|..++..+.+. ..-+.
T Consensus       521 ~~E~I------------------------~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~-nrlkQ  575 (961)
T KOG4673|consen  521 LQETI------------------------EKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKE-NRLKQ  575 (961)
T ss_pred             HHHHH------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-hhhhh
Confidence            33333                        668899999999999999999999999999999999999977422 11234


Q ss_pred             hhHHHHHHhhHHHHHHHHHhhhhhHHHHh----hHHHhhHHHHHHhc
Q 006962          435 SQLNNDLRKLAQAVEDLKANLMDKETELQ----NISEENEMLKLEIS  477 (623)
Q Consensus       435 ~el~~~l~~~~~~v~~LKa~L~dke~elq----~~~~ene~Lk~e~~  477 (623)
                      .++..+-..+-..|.+|+..|--+|..+.    -+-.||+.|..-+.
T Consensus       576 dear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlq  622 (961)
T KOG4673|consen  576 DEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQ  622 (961)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666667788888888888876653    46677777766554

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.27  E-value=0.96  Score=45.22  Aligned_cols=111  Identities=24%  Similarity=0.317  Sum_probs=83.2

Q ss_pred             hhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHH---HHHHHH
Q 006962          376 KHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQ---AVEDLK  452 (623)
Q Consensus       376 Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~---~v~~LK  452 (623)
                      |.=|+.-=..-=.-++.+|.+|.++|.+....+..++.|+-||..|.--+.+..  ..-.+|...|.....   .+..+|
T Consensus        15 K~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~--~e~~eL~k~L~~y~kdK~~L~~~k   92 (201)
T PF13851_consen   15 KNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAE--EEVEELRKQLKNYEKDKQSLQNLK   92 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344457899999999999999999999999999999998887431  222566666665554   445678


Q ss_pred             HhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccch
Q 006962          453 ANLMDKETELQNISEENEMLKLEISKRELDTPNMNS  488 (623)
Q Consensus       453 a~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~  488 (623)
                      +.+...+.+|..+.-+++.|.....+.+.++...+.
T Consensus        93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~  128 (201)
T PF13851_consen   93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR  128 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999998876655544433

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.26  E-value=0.012  Score=67.49  Aligned_cols=50  Identities=20%  Similarity=0.185  Sum_probs=0.0

Q ss_pred             HHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHh
Q 006962          244 LLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE  293 (623)
Q Consensus       244 ~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq  293 (623)
                      ..++......++.|.-+...+.+.+..+..+-+........|.+.+..|+
T Consensus       376 e~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~  425 (713)
T PF05622_consen  376 EQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELE  425 (713)
T ss_dssp             --------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33333334444555555555555555555554544444444444444443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.22  E-value=8.9  Score=40.69  Aligned_cols=83  Identities=23%  Similarity=0.248  Sum_probs=54.3

Q ss_pred             HHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHH
Q 006962          253 SVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEE  332 (623)
Q Consensus       253 tve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~E  332 (623)
                      +++.|..|...+......+..-+...+.+++.|+..+..|+......                   +.+...+.+.+..+
T Consensus       157 ~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~-------------------~~~D~~eL~~lr~e  217 (325)
T PF08317_consen  157 NLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEI-------------------ESCDQEELEALRQE  217 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------hhcCHHHHHHHHHH
Confidence            34556666666666666777777777788888888888888754421                   12234456667777


Q ss_pred             HhhchhhHHHHHHHHHHHHHhh
Q 006962          333 LSSLKSEVGQLRSALEIAETKL  354 (623)
Q Consensus       333 L~s~ksEIeeLRsaLe~~Etr~  354 (623)
                      |...+.+|+.+|..|...+.++
T Consensus       218 L~~~~~~i~~~k~~l~el~~el  239 (325)
T PF08317_consen  218 LAEQKEEIEAKKKELAELQEEL  239 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777776554444

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.10  E-value=8.9  Score=44.41  Aligned_cols=106  Identities=24%  Similarity=0.353  Sum_probs=56.2

Q ss_pred             hhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHH---h
Q 006962          327 KHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA---N  403 (623)
Q Consensus       327 ~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA---~  403 (623)
                      -.|+.||+.++.++..-++.++.-+...|+....                      =..++.+-.+++++|-++|-   .
T Consensus       110 ~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~----------------------~~~~E~qR~rlr~elKe~KfRE~R  167 (772)
T KOG0999|consen  110 LELENELKQLRQELTNVQEENERLEKVHSDLKES----------------------NAAVEDQRRRLRDELKEYKFREAR  167 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----------------------chhhHHHHHHHHHHHHHHHHHHHH
Confidence            3377777777777766666555444444432211                      12234444556666665552   3


Q ss_pred             hcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-HHHHHHhhHHHHHHHHHhhhh
Q 006962          404 LMDKETELQGISEENEGLHMQLDKNLMCQRESQ-LNNDLRKLAQAVEDLKANLMD  457 (623)
Q Consensus       404 LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~e-l~~~l~~~~~~v~~LKa~L~d  457 (623)
                      |+-   +---+-|||=+|+..+-.-..++-|.| |+-+++++.+++.-|+-.+.|
T Consensus       168 lls---eYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee  219 (772)
T KOG0999|consen  168 LLS---EYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE  219 (772)
T ss_pred             HHH---HHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            332   222234677777666654444454443 556666666666666655544

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=94.09  E-value=13  Score=42.26  Aligned_cols=442  Identities=17%  Similarity=0.225  Sum_probs=192.7

Q ss_pred             chhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhH
Q 006962           70 RISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETD  149 (623)
Q Consensus        70 r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d  149 (623)
                      ++++++.++..+.+.+.+-+  +       .+|...+.++...+..+...+......+.++-.++..--.++..++.. =
T Consensus        80 ~~~~ie~~l~~ae~~~~~~~--f-------~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~-y  149 (569)
T PRK04778         80 SLPDIEEQLFEAEELNDKFR--F-------RKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDL-Y  149 (569)
T ss_pred             hhhhHHHHHHHHHHHHhccc--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            45666666666666654322  1       345555555555555555555555555555555555544454444332 2


Q ss_pred             HhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHh
Q 006962          150 QSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRES  229 (623)
Q Consensus       150 ~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~  229 (623)
                      +..+..+-+-+++-..=...|..-+..|+..=.+......+     +-=..|.--|..++..+..--..|+.+-..+.+|
T Consensus       150 ~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~-----Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~  224 (569)
T PRK04778        150 RELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTES-----GDYVEAREILDQLEEELAALEQIMEEIPELLKEL  224 (569)
T ss_pred             HHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444454555554444555777777777666666553331     1112222333334433333333333333333333


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCC
Q 006962          230 KESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSG  309 (623)
Q Consensus       230 keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~  309 (623)
                      .          ..+=.||+.-+.....|..+|-.+..  -.+..++..-+.++......+..|+.+.+....        
T Consensus       225 ~----------~~~P~ql~el~~gy~~m~~~gy~~~~--~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~--------  284 (569)
T PRK04778        225 Q----------TELPDQLQELKAGYRELVEEGYHLDH--LDIEKEIQDLKEQIDENLALLEELDLDEAEEKN--------  284 (569)
T ss_pred             H----------HHhhHHHHHHHHHHHHHHHcCCCCCC--CChHHHHHHHHHHHHHHHHHHHhcChHHHHHHH--------
Confidence            3          22223555555555555555544332  122333333333333333333333322221110        


Q ss_pred             CccchhhhhhhhhhhhhhhHHHHH---hhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHH
Q 006962          310 DYDLGQKIKENQDTMESKHLEEEL---SSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVEL  386 (623)
Q Consensus       310 ~~~~~~~~~~~~~~~e~~~Le~EL---~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~EL  386 (623)
                           .     .-...+++|..-|   ..++..|+.....+...=....+.+..+..       .+++++..|...+.++
T Consensus       285 -----~-----~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~-------Ei~~l~~sY~l~~~e~  347 (569)
T PRK04778        285 -----E-----EIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE-------EIDRVKQSYTLNESEL  347 (569)
T ss_pred             -----H-----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHccccCchhH
Confidence                 0     0001111111111   123444554444444444444444444432       3445666555444443


Q ss_pred             HHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHH
Q 006962          387 EAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNIS  466 (623)
Q Consensus       387 eaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~  466 (623)
                      . ..+.+..++.+|...+-+-+..+-........+..++..-  ..+-.++..+...+...|..|+..-.+-...|+.+.
T Consensus       348 ~-~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel--~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~  424 (569)
T PRK04778        348 E-SVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEI--LKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYR  424 (569)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 2333333444444333322222222222222222222111  112234455555555555555555555555555555


Q ss_pred             HhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 006962          467 EENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRL  546 (623)
Q Consensus       467 ~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrL  546 (623)
                      .....+|..+.+  ...+.+++.-......+..       ++..+..+++...=+..       |.+..-.+...-+..|
T Consensus       425 ~~L~~ikr~l~k--~~lpgip~~y~~~~~~~~~-------~i~~l~~~L~~g~VNm~-------ai~~e~~e~~~~~~~L  488 (569)
T PRK04778        425 NKLHEIKRYLEK--SNLPGLPEDYLEMFFEVSD-------EIEALAEELEEKPINME-------AVNRLLEEATEDVETL  488 (569)
T ss_pred             HHHHHHHHHHHH--cCCCCCcHHHHHHHHHHHH-------HHHHHHHHhccCCCCHH-------HHHHHHHHHHHHHHHH
Confidence            555555555543  2233444444434433321       22222222222222222       2222233344455566


Q ss_pred             hhchHHHHHHHHHHHHhhccCCCCcccccccCCCCCCC
Q 006962          547 KVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYN  584 (623)
Q Consensus       547 rVQseQWRKAAeaAaa~Ls~g~ng~~~er~gs~d~~~~  584 (623)
                      .-|++.-..+|.-+--++.-||  ||......++.+|+
T Consensus       489 ~~q~~dL~~~a~~lE~~Iqy~n--Rfr~~~~~V~~~f~  524 (569)
T PRK04778        489 EEETEELVENATLTEQLIQYAN--RYRSDNEEVAEALN  524 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh--ccCCCCHHHHHHHH
Confidence            6666666777766666665555  56555555554443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.06  E-value=12  Score=41.77  Aligned_cols=185  Identities=16%  Similarity=0.208  Sum_probs=96.1

Q ss_pred             chhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhH
Q 006962           70 RISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETD  149 (623)
Q Consensus        70 r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d  149 (623)
                      +|.+-.-+..+++.+|+..+..+++.+..-.+...++.+..+++.++...|...+.|..+....+          ...++
T Consensus        53 ~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L----------a~~L~  122 (420)
T COG4942          53 KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL----------AEQLA  122 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence            35555555667777777777777777777888888888888888888888888877772222221          12221


Q ss_pred             HhhHH---H--HHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHH----HHHHHHH
Q 006962          150 QSCQS---E--LQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLI----ETISLME  220 (623)
Q Consensus       150 ~~wqs---E--leavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~la----etl~lvE  220 (623)
                      -..++   .  ..-+...++.++          .++.+.+.-+..+-..++.+-..+..+|...++.++    +--.++-
T Consensus       123 A~~r~g~~p~~~ll~~~eda~~~----------~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~  192 (420)
T COG4942         123 ALQRSGRNPPPALLVSPEDAQRS----------VRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLS  192 (420)
T ss_pred             HHHhccCCCCchhhcChhhhhHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111   0  000111111111          233333444444444444444444445555555541    1112222


Q ss_pred             HHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHH
Q 006962          221 NMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASE  274 (623)
Q Consensus       221 ~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~e  274 (623)
                      ..+.+...+......=+.+...+...|.......+.|+..-..+...+.++..+
T Consensus       193 eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~  246 (420)
T COG4942         193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAA  246 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            333333333333333333445555566666666677777777777666665533

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.05  E-value=0.015  Score=66.94  Aligned_cols=30  Identities=23%  Similarity=0.402  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHhhhhhHHHHhhHHHhhHHHH
Q 006962          444 LAQAVEDLKANLMDKETELQNISEENEMLK  473 (623)
Q Consensus       444 ~~~~v~~LKa~L~dke~elq~~~~ene~Lk  473 (623)
                      ...+|..||..|.+++..+..+..+++..|
T Consensus       620 ~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k  649 (713)
T PF05622_consen  620 SSPEIQALKKQLQEKDRRIESLEKELEKSK  649 (713)
T ss_dssp             ------------------------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            445556666666666666666655555444

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.73  E-value=10  Score=39.57  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhH
Q 006962          172 SALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAK  251 (623)
Q Consensus       172 sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~ak  251 (623)
                      .++-.|+.|-.++....-=....-+-...+.++++.++..+.+..-.++.|++++...+.--..++.=           .
T Consensus         7 ~~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r-----------~   75 (239)
T COG1579           7 KSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER-----------I   75 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence            34455666666665555544455666677788888999988888888888888887765322222221           1


Q ss_pred             hHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 006962          252 LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS  297 (623)
Q Consensus       252 atve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a  297 (623)
                      ...+-.. .+++=+..|+.|..++...+-+..+||..+..|.....
T Consensus        76 ~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~  120 (239)
T COG1579          76 KRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIE  120 (239)
T ss_pred             HHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1222222 66677788999999999999999999998888876433

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=93.51  E-value=25  Score=43.36  Aligned_cols=128  Identities=19%  Similarity=0.228  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHH---HHHHHHHHH
Q 006962          170 LASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQ---ALARETLLQ  246 (623)
Q Consensus       170 L~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~---aL~~E~~~Q  246 (623)
                      |+..-.-|-.|+++|+.-.+-=-.--.--++..+++..++++..+.+..--.++--..+++...-+|.   .-+.+-.+.
T Consensus       179 lAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmD  258 (1195)
T KOG4643|consen  179 LADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMD  258 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhh
Confidence            33333446667777766543211222233455578888888888877766555555555555444333   334666777


Q ss_pred             HHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHH--HhHHHHHHHHhhhhh
Q 006962          247 LETAKLSVEALRAEGMKAIEAYSSIASELERSRTRI--NLLEGLVSKLEADTS  297 (623)
Q Consensus       247 LE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~--~~LE~lvskLq~~~a  297 (623)
                      ++--+..|+-|+.|..-+.++..-|.-.|..-|+|-  .+||-.+-+++.+++
T Consensus       259 s~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~  311 (1195)
T KOG4643|consen  259 SDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLD  311 (1195)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHH
Confidence            777788888888888888877777776676666655  555655555554433

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.48  E-value=1.9  Score=44.67  Aligned_cols=140  Identities=25%  Similarity=0.327  Sum_probs=90.2

Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHhh---hhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhc
Q 006962          329 LEEELSSLKSEVGQLRSALEIAETKL---NEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM  405 (623)
Q Consensus       329 Le~EL~s~ksEIeeLRsaLe~~Etr~---qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LM  405 (623)
                      ....|..++++++.++-++.+.++++   ..+..+....|+.+-+.++....-.  --.--..++..+..++.-++-+.-
T Consensus        29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl--~~v~~~~e~~aL~~E~~~ak~r~~  106 (239)
T COG1579          29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL--SAVKDERELRALNIEIQIAKERIN  106 (239)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHH
Confidence            44567788888888888888888887   5677778888887777764433211  112223345578888888888888


Q ss_pred             chhhhhhhhhhhhhhhhhhhhh--hhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962          406 DKETELQGISEENEGLHMQLDK--NLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  477 (623)
Q Consensus       406 DKEtELQ~IsEENE~L~~ei~~--~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~  477 (623)
                      +.+.+|..+.++-+.|..+|..  ..-..-+..+......++..|..+..       +.+.+..+-+.|+..+.
T Consensus       107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e-------~~~~~~~~~~~L~~~l~  173 (239)
T COG1579         107 SLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE-------EGQELSSKREELKEKLD  173 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcC
Confidence            8888899888888888877751  11122233333333333333333333       56666667777776666

>PRK09039 hypothetical protein; Validated

Probab=93.20  E-value=14  Score=39.89  Aligned_cols=77  Identities=14%  Similarity=0.141  Sum_probs=49.9

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHH
Q 006962          202 HLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTR  281 (623)
Q Consensus       202 ~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r  281 (623)
                      ..+|...+...++.-..|..|+.++..++.--+...+.+.              .+...+.....-+..+...|+..-++
T Consensus       122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~--------------~ae~~~~~~~~~i~~L~~~L~~a~~~  187 (343)
T PRK09039        122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD--------------ASEKRDRESQAKIADLGRRLNVALAQ  187 (343)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677788888888888888888888877765444444433              33334444444455555555555554


Q ss_pred             -HHhHHHHHHHH
Q 006962          282 -INLLEGLVSKL  292 (623)
Q Consensus       282 -~~~LE~lvskL  292 (623)
                       +++|+...+.+
T Consensus       188 ~~~~l~~~~~~~  199 (343)
T PRK09039        188 RVQELNRYRSEF  199 (343)
T ss_pred             HHHHHHHhHHHH
Confidence             77877777777

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=93.16  E-value=23  Score=42.09  Aligned_cols=54  Identities=19%  Similarity=0.240  Sum_probs=34.4

Q ss_pred             hchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHH
Q 006962          335 SLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEA  388 (623)
Q Consensus       335 s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELea  388 (623)
                      -.+-||++|.-.|.++|.|.+|=-.+..--++-.+-++|.+.---+++=.-++.
T Consensus       609 ~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawer  662 (961)
T KOG4673|consen  609 MFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWER  662 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHH
Confidence            457799999999999999987644444444454455555555444444444443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=92.99  E-value=28  Score=42.57  Aligned_cols=103  Identities=24%  Similarity=0.347  Sum_probs=67.8

Q ss_pred             hhhhHHHHHHHHHHH-----------------HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh-
Q 006962           71 ISELESQVSRLQEDL-----------------KKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSA-  132 (623)
Q Consensus        71 ~seLesql~q~QeeL-----------------kkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa-  132 (623)
                      --+|..|+.++-|.|                 .+.|-|+.+++-||-++.+.--+.++++...--+++++|-+-+..-. 
T Consensus       226 e~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~e  305 (1243)
T KOG0971|consen  226 EEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEE  305 (1243)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446888988887755                 45567888899999999888888888888888777776544433222 


Q ss_pred             ----hHHHHHHHHHH-HhHHhHHhhHHHHHHHhhh---hhccHHHHHHH
Q 006962          133 ----SEEARAVELQK-VSQETDQSCQSELQAIQNQ---HSIDSAALASA  173 (623)
Q Consensus       133 ----~e~sr~~Elqk-~~q~~d~~wqsEleavq~q---hs~DsaaL~sa  173 (623)
                          +..--|-=|.| ...+|-.+.|-|+++.+--   -..|.++|-+-
T Consensus       306 mad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaE  354 (1243)
T KOG0971|consen  306 MADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAE  354 (1243)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                22222333334 6677777888888877643   33444444433

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.92  E-value=30  Score=42.64  Aligned_cols=286  Identities=21%  Similarity=0.266  Sum_probs=0.0

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHH-HHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHH
Q 006962          204 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALA-RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRI  282 (623)
Q Consensus       204 ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~-~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~  282 (623)
                      +|..+=+-|.+.|+.+|.=|..+..+.+-.-.=+.|= +=--..|..+..-++.|..+.+.+.+.-+++..+|+..+..+
T Consensus       188 kI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~  267 (1200)
T KOG0964|consen  188 KINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDES  267 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH


Q ss_pred             HhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhH
Q 006962          283 NLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST  362 (623)
Q Consensus       283 ~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st  362 (623)
                      ..+...+..|...+.                                     -++.|-++|.+.    +++.......+.
T Consensus       268 ~~~~~~i~ele~~l~-------------------------------------~l~~ekeq~~a~----~t~~~k~kt~le  306 (1200)
T KOG0964|consen  268 EDLKCEIKELENKLT-------------------------------------NLREEKEQLKAR----ETKISKKKTKLE  306 (1200)
T ss_pred             HHHHhHHHHHHHHHH-------------------------------------HHHHHHHHHHHH----HHHHHHHhhhhh


Q ss_pred             HHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhh------------
Q 006962          363 VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLM------------  430 (623)
Q Consensus       363 ~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~------------  430 (623)
                      |+|+   .+-+++-...-+|-..|. .|.+.++.|.+-+-.|---+-.-+.+.++-..++..|..-..            
T Consensus       307 l~~k---dlq~~i~~n~q~r~~~l~-~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~  382 (1200)
T KOG0964|consen  307 LKIK---DLQDQITGNEQQRNLALH-VLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRY  382 (1200)
T ss_pred             hhhH---HHHHHhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccc


Q ss_pred             ------hhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHH
Q 006962          431 ------CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEA  504 (623)
Q Consensus       431 ------~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea  504 (623)
                            -.|..=+..++..+..-|+..|.+-.-+-+++..+..+....-.+|+           +....+.--+..-++.
T Consensus       383 sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~-----------~l~~si~e~~~r~~~~  451 (1200)
T KOG0964|consen  383 SQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIK-----------ELESSINETKGRMEEF  451 (1200)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHhhhhhHHHHH


Q ss_pred             HHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 006962          505 LMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRR  545 (623)
Q Consensus       505 ~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrr  545 (623)
                      ..+.--+..+.|+.-.+---+--.=.+-+..-..++..+.+
T Consensus       452 ~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~  492 (1200)
T KOG0964|consen  452 DAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSR  492 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=92.89  E-value=25  Score=41.73  Aligned_cols=154  Identities=24%  Similarity=0.340  Sum_probs=93.4

Q ss_pred             hhhhHHHHHhhchhhHHHHHHHHHHHHHhh-----------------hhhhhhhHHHHhhHHHHHHHHhhhc-------c
Q 006962          325 ESKHLEEELSSLKSEVGQLRSALEIAETKL-----------------NEGQIQSTVKIKSAFEQLEQIKHQS-------G  380 (623)
Q Consensus       325 e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~-----------------qEE~i~st~~i~~aye~~e~~Kses-------~  380 (623)
                      -+..|+.++-+...|-.=|--.|.|+++++                 |+++....-++.++-+++..+..--       .
T Consensus       339 qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~  418 (739)
T PF07111_consen  339 QVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLE  418 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344466677766667777777788888877                 4677777777777777765554311       1


Q ss_pred             cchHHHHHHHHhhhh-----------------------hHHHHHH--------hhcchhhhhhhhhhhhhhhhhhhhhhh
Q 006962          381 LREVELEAELQKAKS-----------------------DIEELKA--------NLMDKETELQGISEENEGLHMQLDKNL  429 (623)
Q Consensus       381 qRE~ELeaELKk~ks-----------------------dIeELKA--------~LMDKEtELQ~IsEENE~L~~ei~~~~  429 (623)
                      -..++++..+.++.+                       .+..|+-        .-+|-..|||.+-+|-..|-+++.-..
T Consensus       419 s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa  498 (739)
T PF07111_consen  419 SQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSA  498 (739)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence            133444443333222                       1112211        123778899999999998888864210


Q ss_pred             h--------------------hhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhch
Q 006962          430 M--------------------CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK  478 (623)
Q Consensus       430 ~--------------------~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k  478 (623)
                      .                    +..-..|...|......+..+..+|..-+.-++....+-..|..++..
T Consensus       499 ~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~  567 (739)
T PF07111_consen  499 RLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQ  567 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            0                    112245566666666677777777777777777777777777777664

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PRK09039 hypothetical protein; Validated

Probab=92.85  E-value=13  Score=40.03  Aligned_cols=28  Identities=21%  Similarity=0.186  Sum_probs=12.4

Q ss_pred             hhHhhhhHHHHHHHHHHHHHHHHHhHhH
Q 006962          226 LRESKESETQAQALARETLLQLETAKLS  253 (623)
Q Consensus       226 l~e~keSeAqa~aL~~E~~~QLE~akat  253 (623)
                      +.+++.-.+..+.-+..+...|+.+.+.
T Consensus       160 L~~ae~~~~~~~~~i~~L~~~L~~a~~~  187 (343)
T PRK09039        160 LDASEKRDRESQAKIADLGRRLNVALAQ  187 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444445555555555433

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=92.76  E-value=20  Score=40.38  Aligned_cols=106  Identities=20%  Similarity=0.249  Sum_probs=57.8

Q ss_pred             hhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhh
Q 006962          325 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL  404 (623)
Q Consensus       325 e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~L  404 (623)
                      +.++|..|....+.+|..|+-.|..-.+..|+.-.++..+..                  -+...++.+..-+..+... 
T Consensus       275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~-  335 (511)
T PF09787_consen  275 ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQE------------------SFREQPQELSQQLEPELTT-  335 (511)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHHHHHHHhch-
Confidence            456688888888888888888887777777654444432222                  1222223333333333222 


Q ss_pred             cchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhh
Q 006962          405 MDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMD  457 (623)
Q Consensus       405 MDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~d  457 (623)
                         |.++.....|=--+..+.     ...-..+...++..+.+|..|+..|..
T Consensus       336 ---e~e~~l~~~el~~~~ee~-----~~~~s~~~~k~~~ke~E~q~lr~~l~~  380 (511)
T PF09787_consen  336 ---EAELRLYYQELYHYREEL-----SRQKSPLQLKLKEKESEIQKLRNQLSA  380 (511)
T ss_pred             ---HHHHHHHHHHHHHHHHHH-----HHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence               444333333322222222     223356677777778888888885544

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=92.74  E-value=23  Score=40.88  Aligned_cols=39  Identities=23%  Similarity=0.174  Sum_probs=24.7

Q ss_pred             hhHHHHHHHhhhh---hccHHHHHHHHHHHHHHHHHHHHHHH
Q 006962          151 SCQSELQAIQNQH---SIDSAALASALNELQQLKAQFEMVAE  189 (623)
Q Consensus       151 ~wqsEleavq~qh---s~DsaaL~sal~Eiq~LK~qL~~~~e  189 (623)
                      .|+.++...+++-   ..+..-|.-+...|.+++.|+.....
T Consensus       273 ~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~  314 (650)
T TIGR03185       273 EIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQ  314 (650)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHH
Confidence            3444444444442   33444467777999999999988654

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=92.62  E-value=9.3  Score=44.39  Aligned_cols=194  Identities=14%  Similarity=0.173  Sum_probs=106.2

Q ss_pred             hchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhh
Q 006962          335 SLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGI  414 (623)
Q Consensus       335 s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~I  414 (623)
                      =+...+.+||..|..+|.+++.=.....+              -..+...-....|..+...+...++++++.++.++.+
T Consensus       198 ~L~~ql~~l~~~l~~aE~~l~~fk~~~~l--------------~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l  263 (754)
T TIGR01005       198 FLAPEIADLSKQSRDAEAEVAAYRAQSDL--------------LMGNNATLATQQLAELNTELSRARANRAAAEGTADSV  263 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------cccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34557888899999998888532222111              0112222233667788888888888888888888776


Q ss_pred             hhhhhhhhh--hhhhhhhh-----hhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccc
Q 006962          415 SEENEGLHM--QLDKNLMC-----QRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMN  487 (623)
Q Consensus       415 sEENE~L~~--ei~~~~~~-----~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~  487 (623)
                      ...-..-..  .+-.....     ....+|..++..+...+.+|....-++=-.++.+..+.+.|+.+|..   +..++.
T Consensus       264 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~---e~~~~~  340 (754)
T TIGR01005       264 KKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRS---ELQKIT  340 (754)
T ss_pred             HHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            432111000  00000111     33455566666666666666666666666666777777777777652   122222


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 006962          488 SNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRR  545 (623)
Q Consensus       488 ~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrr  545 (623)
                      .....++..|++.+......+..+...+..-.....++..=-.-++.++.-.+.=|.|
T Consensus       341 ~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r  398 (754)
T TIGR01005       341 KSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTN  398 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333445566666655556666665555555555554444444444444444444433

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=92.57  E-value=13  Score=44.37  Aligned_cols=113  Identities=27%  Similarity=0.357  Sum_probs=59.6

Q ss_pred             HhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhc
Q 006962          402 ANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKREL  481 (623)
Q Consensus       402 A~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~  481 (623)
                      +.|.+...+|....-||..|..-+...  ..-..+|.......+.++..|++       .|+++..||..||-++.-   
T Consensus        92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~--~~~i~~l~~~~~~~e~~~~~l~~-------~l~~~eken~~Lkye~~~---  159 (769)
T PF05911_consen   92 AKLAELSKRLAESAAENSALSKALQEK--EKLIAELSEEKSQAEAEIEDLMA-------RLESTEKENSSLKYELHV---  159 (769)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHH---
Confidence            444444445555555666555444211  12234455555566677777777       566677777777777651   


Q ss_pred             cCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHH-HHHHHHHHHhhHHHHHHHhhhhhc
Q 006962          482 DTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARM-AEQLEAAQSANCEAEAELRRLKVQ  549 (623)
Q Consensus       482 ~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~-~EqL~aaq~a~~elEaElrrLrVQ  549 (623)
                               ..+             -|.+-++|-+=|.+-|.-. +.+|+.+. .-.-||||-+|||.=
T Consensus       160 ---------~~k-------------eleir~~E~~~~~~~ae~a~kqhle~vk-kiakLEaEC~rLr~l  205 (769)
T PF05911_consen  160 ---------LSK-------------ELEIRNEEREYSRRAAEAASKQHLESVK-KIAKLEAECQRLRAL  205 (769)
T ss_pred             ---------HHH-------------HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence                     111             1222333433332222222 24555554 235699999999974

The function of this family is unknown.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=91.85  E-value=29  Score=40.06  Aligned_cols=43  Identities=23%  Similarity=0.352  Sum_probs=20.2

Q ss_pred             hhHHHHHHhhHHHHHHHHHhhhh--hHHHHhhHHHhhHHHHHHhc
Q 006962          435 SQLNNDLRKLAQAVEDLKANLMD--KETELQNISEENEMLKLEIS  477 (623)
Q Consensus       435 ~el~~~l~~~~~~v~~LKa~L~d--ke~elq~~~~ene~Lk~e~~  477 (623)
                      ..+..++..+..+++.|..+|..  -+..++.+..+-..+..++.
T Consensus       394 ~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~  438 (650)
T TIGR03185       394 SQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELF  438 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555543  12344444444444444444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=91.56  E-value=36  Score=40.59  Aligned_cols=94  Identities=24%  Similarity=0.251  Sum_probs=63.9

Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHh---hhcccchHHHHHHHHhhhhhHHHHHHhhc
Q 006962          329 LEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIK---HQSGLREVELEAELQKAKSDIEELKANLM  405 (623)
Q Consensus       329 Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~K---ses~qRE~ELeaELKk~ksdIeELKA~LM  405 (623)
                      ...|+..++.|+..||+.+...+.+|.++..++--.+...-+.+....   -+...|-.+|+.+|+.+..-..+-.+.|.
T Consensus       364 av~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~Ln  443 (717)
T PF09730_consen  364 AVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLN  443 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            345666777777777777777777887776655555554444443332   24455778899999988888888887777


Q ss_pred             chhhhhhhhhhhhhhhh
Q 006962          406 DKETELQGISEENEGLH  422 (623)
Q Consensus       406 DKEtELQ~IsEENE~L~  422 (623)
                      --=.+|..++|+=-.|-
T Consensus       444 sAQDELvtfSEeLAqLY  460 (717)
T PF09730_consen  444 SAQDELVTFSEELAQLY  460 (717)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777777654443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF13514 AAA_27: AAA domain

Probab=91.44  E-value=43  Score=41.19  Aligned_cols=65  Identities=25%  Similarity=0.311  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHH------hhHHHHHHHhhhhhchHHHHHHHHHHHHhh
Q 006962          499 SAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQS------ANCEAEAELRRLKVQSDQWRKAAEAAASML  564 (623)
Q Consensus       499 ~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~------a~~elEaElrrLrVQseQWRKAAeaAaa~L  564 (623)
                      ..-.+....+..+..+.+.-..+.+++..+|.+...      +..+.+.-..+|+-..++|.. ...|..+|
T Consensus       896 ~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~~~~-~~la~~lL  966 (1111)
T PF13514_consen  896 AELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEEWAA-LRLAAELL  966 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            334455566666777777777777777777766543      344445555556666788864 33444444

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.28  E-value=34  Score=39.77  Aligned_cols=70  Identities=19%  Similarity=0.156  Sum_probs=44.8

Q ss_pred             chhhHHHHHHHHHHHHHhh-------hhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhc
Q 006962          336 LKSEVGQLRSALEIAETKL-------NEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM  405 (623)
Q Consensus       336 ~ksEIeeLRsaLe~~Etr~-------qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LM  405 (623)
                      +++.++.+...|-.++.+|       +|+..-+-.+|..-|+.+-..+..+..-..+....++...-...++.+..+
T Consensus       458 ~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~  534 (581)
T KOG0995|consen  458 KIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGE  534 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555555       466777777777777777777777777777777667666666665555554

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=91.13  E-value=7.8  Score=37.38  Aligned_cols=107  Identities=29%  Similarity=0.371  Sum_probs=68.5

Q ss_pred             hHHHHHhhchhhHHHHHHHHHHHHHhhh---hhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhh
Q 006962          328 HLEEELSSLKSEVGQLRSALEIAETKLN---EGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL  404 (623)
Q Consensus       328 ~Le~EL~s~ksEIeeLRsaLe~~Etr~q---EE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~L  404 (623)
                      +...+|+.++++-.-|.-.+..-|+.+.   +++....+            ..+.++++++      .++..|..+-.+|
T Consensus         7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~------------daEn~k~eie------~L~~el~~lt~el   68 (140)
T PF10473_consen    7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLIL------------DAENSKAEIE------TLEEELEELTSEL   68 (140)
T ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHH------------HHHHHHHHHH------HHHHHHHHHHHHH
Confidence            3556777777777777777776666662   22222221            2344444444      6788888888888


Q ss_pred             cchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHh
Q 006962          405 MDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEE  468 (623)
Q Consensus       405 MDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~e  468 (623)
                      =|-+.+|..++.|++.|...                |.++...|.+|.....+...-|+.+..+
T Consensus        69 ~~L~~EL~~l~sEk~~L~k~----------------lq~~q~kv~eLE~~~~~~~~~l~~~E~e  116 (140)
T PF10473_consen   69 NQLELELDTLRSEKENLDKE----------------LQKKQEKVSELESLNSSLENLLQEKEQE  116 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            88889999988888755444                4455566666666666666666655555

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=90.97  E-value=53  Score=41.37  Aligned_cols=19  Identities=16%  Similarity=0.099  Sum_probs=14.8

Q ss_pred             hHHHHHHHHHHHHhhccCC
Q 006962          550 SDQWRKAAEAAASMLSTGN  568 (623)
Q Consensus       550 seQWRKAAeaAaa~Ls~g~  568 (623)
                      .-||-.+.++..|-+..-+
T Consensus       912 hRqe~~~k~~t~ac~~e~~  930 (1317)
T KOG0612|consen  912 HRQELTCKDCTLACLEETN  930 (1317)
T ss_pred             HHHHHHHHHHhHHHHHHHH
Confidence            3499999999988886544

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=90.70  E-value=33  Score=38.58  Aligned_cols=40  Identities=15%  Similarity=0.267  Sum_probs=25.1

Q ss_pred             HHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHH
Q 006962          332 ELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQ  371 (623)
Q Consensus       332 EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~  371 (623)
                      .+..++..|..+...|..-+.+..+..-.++..+..+|-+
T Consensus        88 ~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~  127 (420)
T COG4942          88 DLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRS  127 (420)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4445555555555555555555567777788777777764

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=89.89  E-value=52  Score=39.57  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHH
Q 006962          102 AQQDAEDSKKQLLALSSKLQES  123 (623)
Q Consensus       102 a~~eleEskkQl~e~SskLees  123 (623)
                      ...+++....++.++....+..
T Consensus       230 l~~e~e~l~~~~~el~~~~~~~  251 (908)
T COG0419         230 LEQEIEALEERLAELEEEKERL  251 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666444443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.88  E-value=60  Score=40.28  Aligned_cols=149  Identities=21%  Similarity=0.299  Sum_probs=100.2

Q ss_pred             HHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHH-------HHHHhh-hcccchHHHHHHHHhhhhhHHHHHHh
Q 006962          332 ELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQ-------LEQIKH-QSGLREVELEAELQKAKSDIEELKAN  403 (623)
Q Consensus       332 EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~-------~e~~Ks-es~qRE~ELeaELKk~ksdIeELKA~  403 (623)
                      .|+....++..-++.|.+.|..++.=+.++. +.+.-+.+       +...+. --..-.+.+-..++....+|.+++..
T Consensus       678 ~l~~~~~~~~~~q~el~~le~eL~~le~~~~-kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~  756 (1174)
T KOG0933|consen  678 KLKQAQKELRAIQKELEALERELKSLEAQSQ-KFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQ  756 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHH
Confidence            4455555666666677777776643222211 11111111       111111 11122345778899999999999999


Q ss_pred             hcchhhhhhhhhhhhhhhhhhhhhhhhhh---hhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhh
Q 006962          404 LMDKETELQGISEENEGLHMQLDKNLMCQ---RESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRE  480 (623)
Q Consensus       404 LMDKEtELQ~IsEENE~L~~ei~~~~~~~---ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e  480 (623)
                      +-+++--+....++-.+|-..++.- ...   +=.+|.++|+.....+.+-...+.-++.+.+.|.-|-+.|+.++...+
T Consensus       757 Ike~~~~~k~~~~~i~~lE~~~~d~-~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k  835 (1174)
T KOG0933|consen  757 IKEKERALKKCEDKISTLEKKMKDA-KANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLK  835 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888888632 223   335677888888888888888899999999999888888888877555


Q ss_pred             cc
Q 006962          481 LD  482 (623)
Q Consensus       481 ~~  482 (623)
                      ..
T Consensus       836 ~~  837 (1174)
T KOG0933|consen  836 QQ  837 (1174)
T ss_pred             HH
Confidence            43

>PRK11281 hypothetical protein; Provisional

Probab=89.56  E-value=66  Score=40.28  Aligned_cols=28  Identities=21%  Similarity=0.141  Sum_probs=19.4

Q ss_pred             hhhHHHHHhhchhhHHHHHHHHHHHHHh
Q 006962          326 SKHLEEELSSLKSEVGQLRSALEIAETK  353 (623)
Q Consensus       326 ~~~Le~EL~s~ksEIeeLRsaLe~~Etr  353 (623)
                      ...|++|+..++.++..+|-.|.....+
T Consensus       194 ~~~l~ae~~~l~~~~~~~~~~l~~~~~l  221 (1113)
T PRK11281        194 RVLLQAEQALLNAQNDLQRKSLEGNTQL  221 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            3447888888888777777777655444

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.51  E-value=58  Score=39.56  Aligned_cols=128  Identities=24%  Similarity=0.327  Sum_probs=94.9

Q ss_pred             hhhHHHHHhhchhhHHHHHHHHHHHHHhhh---hhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHH
Q 006962          326 SKHLEEELSSLKSEVGQLRSALEIAETKLN---EGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA  402 (623)
Q Consensus       326 ~~~Le~EL~s~ksEIeeLRsaLe~~Etr~q---EE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA  402 (623)
                      ..+|+-||+-++.-+.+|--.|-|.+.++.   .+....|                 .+  +||      ..++|..|++
T Consensus       439 ~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~-----------------~q--~e~------~isei~qlqa  493 (1118)
T KOG1029|consen  439 KKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVT-----------------KQ--REL------MISEIDQLQA  493 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhh-----------------hH--HHH------HHHHHHHHHH
Confidence            345778888888888888888887777663   2222222                 12  222      2455666666


Q ss_pred             hhcchhhhhhhhhhhhhhhhhhhhhhhh-----hhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962          403 NLMDKETELQGISEENEGLHMQLDKNLM-----CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  477 (623)
Q Consensus       403 ~LMDKEtELQ~IsEENE~L~~ei~~~~~-----~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~  477 (623)
                      .|-.--..|+.+.-|--.|+-.++..+.     +.+-.+|.+.+.+.+.-+.-||..|...++|..+-..+..+++++++
T Consensus       494 rikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlk  573 (1118)
T KOG1029|consen  494 RIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLK  573 (1118)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            6655556677788887788888874433     45678999999999999999999999999999999999999999998


Q ss_pred             h
Q 006962          478 K  478 (623)
Q Consensus       478 k  478 (623)
                      +
T Consensus       574 e  574 (1118)
T KOG1029|consen  574 E  574 (1118)
T ss_pred             H
Confidence            3

>PLN03188 kinesin-12 family protein; Provisional

Probab=89.49  E-value=41  Score=42.47  Aligned_cols=155  Identities=24%  Similarity=0.290  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhh
Q 006962          216 ISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD  295 (623)
Q Consensus       216 l~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~  295 (623)
                      +++.|.||..+.      + -+.|++++.+.|++-|.-.+-|.--.-.||.  ++.++ ||    +|..||+.--.|-.+
T Consensus      1064 islteelr~ele------s-~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~--ghar~-~e----~ya~l~ek~~~ll~~ 1129 (1320)
T PLN03188       1064 ISLAEELRTELD------A-SRALAEKQKHELDTEKRCAEELKEAMQMAME--GHARM-LE----QYADLEEKHIQLLAR 1129 (1320)
T ss_pred             eechHHHHHHHH------H-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHH-HH----HHHHHHHHHHHHHHH
Confidence            556677776543      3 5678899999999999998888887777772  33322 22    566666544433321


Q ss_pred             ----------------hhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhh-hhhh
Q 006962          296 ----------------TSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL-NEGQ  358 (623)
Q Consensus       296 ----------------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~-qEE~  358 (623)
                                      -|+..+                   .+.+=+|       .+-+||.-||..-+ +|.+| .+||
T Consensus      1130 hr~i~egi~dvkkaaakag~kg-------------------~~~~f~~-------alaae~s~l~~ere-ker~~~~~en 1182 (1320)
T PLN03188       1130 HRRIQEGIDDVKKAAARAGVRG-------------------AESKFIN-------ALAAEISALKVERE-KERRYLRDEN 1182 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc-------------------chHHHHH-------HHHHHHHHHHHHHH-HHHHHHHHhh
Confidence                            121111                   1233455       44455555555444 67777 7999


Q ss_pred             hhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhh
Q 006962          359 IQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  426 (623)
Q Consensus       359 i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~  426 (623)
                      ..+-+|+|-..|-|.-.        +||=.-||-+...+.--+.+-||-|-       ||+.|+.+|.
T Consensus      1183 k~l~~qlrdtaeav~aa--------gellvrl~eaeea~~~a~~r~~~~eq-------e~~~~~k~~~ 1235 (1320)
T PLN03188       1183 KSLQAQLRDTAEAVQAA--------GELLVRLKEAEEALTVAQKRAMDAEQ-------EAAEAYKQID 1235 (1320)
T ss_pred             HHHHHHHhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence            99999999887777544        78888888888888878888887664       6777777664

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=88.89  E-value=13  Score=35.84  Aligned_cols=23  Identities=35%  Similarity=0.661  Sum_probs=14.9

Q ss_pred             chhhhHHHHHHHHHHHHHHHhhh
Q 006962           70 RISELESQVSRLQEDLKKAKNQL   92 (623)
Q Consensus        70 r~seLesql~q~QeeLkkaKeQL   92 (623)
                      .+++++.++.++++++......+
T Consensus        82 e~~~~~~~l~~l~~el~~l~~~~  104 (191)
T PF04156_consen   82 ELSELQQQLQQLQEELDQLQERI  104 (191)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHH
Confidence            56666666666666666655555

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.78  E-value=65  Score=39.17  Aligned_cols=71  Identities=24%  Similarity=0.263  Sum_probs=41.4

Q ss_pred             HHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhh---hcccchHHHHHHHHhhhhhHHHHHHhhcc
Q 006962          332 ELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKH---QSGLREVELEAELQKAKSDIEELKANLMD  406 (623)
Q Consensus       332 EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Ks---es~qRE~ELeaELKk~ksdIeELKA~LMD  406 (623)
                      -+....+||.+|.+.|-    +||+-+++++.+-.---.++.++.+   .-++|-.+|.+.+.+....+--||..|-.
T Consensus       480 q~e~~isei~qlqarik----E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqlde  553 (1118)
T KOG1029|consen  480 QRELMISEIDQLQARIK----ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDE  553 (1118)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456778888888876    5666666666544433344444443   34556666666666666555555555543

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=88.29  E-value=58  Score=38.05  Aligned_cols=81  Identities=16%  Similarity=0.171  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhH-HHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhh
Q 006962          217 SLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK-AIEAYSSIASELERSRTRINLLEGLVSKLEAD  295 (623)
Q Consensus       217 ~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~K-a~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~  295 (623)
                      ..+-.|+.++.+++...++...-++..--++-..++.++.|+..-.. ...-..++..+++..+.+.+.|+..+..++.+
T Consensus       288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~  367 (754)
T TIGR01005       288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAA  367 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666665544444443322222233333333333332111 12223455667888888888888888888876


Q ss_pred             hh
Q 006962          296 TS  297 (623)
Q Consensus       296 ~a  297 (623)
                      ..
T Consensus       368 ~~  369 (754)
T TIGR01005       368 SA  369 (754)
T ss_pred             HH
Confidence            55

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.13  E-value=19  Score=38.26  Aligned_cols=82  Identities=23%  Similarity=0.296  Sum_probs=55.4

Q ss_pred             HHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHH
Q 006962          388 AELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISE  467 (623)
Q Consensus       388 aELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~  467 (623)
                      ..|......+.+.++.|+..-+.|+.+..+=+        ..+...=..+..+|.....+|..+|..|.+.+.+++.+..
T Consensus       173 ~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~--------~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~  244 (325)
T PF08317_consen  173 EQLDELLPKLRERKAELEEELENLKQLVEEIE--------SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEE  244 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566666677766666666655411        1122333567778888888888888888888888888888


Q ss_pred             hhHHHHHHhc
Q 006962          468 ENEMLKLEIS  477 (623)
Q Consensus       468 ene~Lk~e~~  477 (623)
                      ..+.+..++.
T Consensus       245 ~i~~~~~~k~  254 (325)
T PF08317_consen  245 KIEELEEQKQ  254 (325)
T ss_pred             HHHHHHHHHH
Confidence            8888777776

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=87.85  E-value=78  Score=38.99  Aligned_cols=101  Identities=9%  Similarity=-0.037  Sum_probs=45.6

Q ss_pred             HHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHh
Q 006962          364 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRK  443 (623)
Q Consensus       364 ~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~  443 (623)
                      +++..|+............-..+...|..+...+..+.+.+......+.....+. ++          ..+..+ ..+..
T Consensus       707 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~f----------~~~~~~-~~~~~  774 (1047)
T PRK10246        707 LPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQAS-VF----------DDQQAF-LAALL  774 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------CCHHHH-HHHcC
Confidence            3344444444444444444445555555555555555555554444333322111 00          011111 22234


Q ss_pred             hHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHh
Q 006962          444 LAQAVEDLKANLMDKETELQNISEENEMLKLEI  476 (623)
Q Consensus       444 ~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~  476 (623)
                      ...++..|...+.+.+..++.+......++..+
T Consensus       775 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l  807 (1047)
T PRK10246        775 DEETLTQLEQLKQNLENQRQQAQTLVTQTAQAL  807 (1047)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666655555444443333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=87.19  E-value=67  Score=37.54  Aligned_cols=75  Identities=16%  Similarity=0.256  Sum_probs=45.0

Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHhh---hhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhc
Q 006962          329 LEEELSSLKSEVGQLRSALEIAETKL---NEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM  405 (623)
Q Consensus       329 Le~EL~s~ksEIeeLRsaLe~~Etr~---qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LM  405 (623)
                      .-.+++.++.++.++-..+..+|-.|   ..+|..++=.+         -.+.|.+|--|.-.-++|=+.||.       
T Consensus       445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~---------~Rs~Yt~RIlEIv~NI~KQk~eI~-------  508 (594)
T PF05667_consen  445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV---------NRSAYTRRILEIVKNIRKQKEEIE-------  508 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHHhHHHHHHHHH-------
Confidence            33455555556655555555555544   23333332111         145778888888888888888876       


Q ss_pred             chhhhhhhhhhhhhhhhhhhh
Q 006962          406 DKETELQGISEENEGLHMQLD  426 (623)
Q Consensus       406 DKEtELQ~IsEENE~L~~ei~  426 (623)
                             .|...+..|+.+|+
T Consensus       509 -------KIl~DTr~lQkeiN  522 (594)
T PF05667_consen  509 -------KILSDTRELQKEIN  522 (594)
T ss_pred             -------HHHHHHHHHHHHHH
Confidence                   45566666777775

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=86.94  E-value=39  Score=34.61  Aligned_cols=219  Identities=19%  Similarity=0.248  Sum_probs=117.9

Q ss_pred             HHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhc
Q 006962          219 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN  298 (623)
Q Consensus       219 vE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~  298 (623)
                      ++.+..++.............+..+..++..-...++.|...+.++..-...+....+....+.+.|...|..+....-.
T Consensus        26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~  105 (264)
T PF06008_consen   26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQE  105 (264)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444433333333334444444444555555555555555555666666666666666666666666643211


Q ss_pred             cccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhh
Q 006962          299 ANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQ  378 (623)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kse  378 (623)
                      .-.-...+..           +...-....|...|..+..=+.++|..      -|.-.....+-+.+-|+.++.+|+..
T Consensus       106 l~~~~~~l~~-----------~~~~~~~~~l~~~l~ea~~mL~emr~r------~f~~~~~~Ae~El~~A~~LL~~v~~~  168 (264)
T PF06008_consen  106 LIEQVESLNE-----------NGDQLPSEDLQRALAEAQRMLEEMRKR------DFTPQRQNAEDELKEAEDLLSRVQKW  168 (264)
T ss_pred             HHHHHHHhCc-----------ccCCCCHHHHHHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1000000000           000000111233333333333333322      24455566778888999999999999


Q ss_pred             cccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhh
Q 006962          379 SGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDK  458 (623)
Q Consensus       379 s~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dk  458 (623)
                      ...+..+.+.=+......+.+.-++|||-..-|+...+-                       .+..+.--..-..+|.+-
T Consensus       169 ~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~-----------------------~~ea~~ln~~n~~~l~~~  225 (264)
T PF06008_consen  169 FQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNK-----------------------TREAEDLNRANQKNLEDL  225 (264)
T ss_pred             HhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHH
Confidence            999999988877888999999999999887777663211                       011111122233445555


Q ss_pred             HHHHhhHHHhhHHHHHHhc
Q 006962          459 ETELQNISEENEMLKLEIS  477 (623)
Q Consensus       459 e~elq~~~~ene~Lk~e~~  477 (623)
                      +...+.|.+.+......|.
T Consensus       226 ~~k~~~l~~~~~~~~~~L~  244 (264)
T PF06008_consen  226 EKKKQELSEQQNEVSETLK  244 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5566666666666666665

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=86.80  E-value=32  Score=33.51  Aligned_cols=26  Identities=15%  Similarity=0.229  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHhhHhhhhHHHHHHH
Q 006962          214 ETISLMENMKNQLRESKESETQAQAL  239 (623)
Q Consensus       214 etl~lvE~lKs~l~e~keSeAqa~aL  239 (623)
                      ||++.|..|...=..-++|++-+..+
T Consensus         3 DT~~~v~~Le~~Gft~~QAe~i~~~l   28 (177)
T PF07798_consen    3 DTHKFVKRLEAAGFTEEQAEAIMKAL   28 (177)
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            56777777765555555555555555

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=86.62  E-value=31  Score=36.31  Aligned_cols=66  Identities=14%  Similarity=0.138  Sum_probs=27.2

Q ss_pred             HHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHhhhcHHHHHHHHH
Q 006962          155 ELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEA-AQTKNAESAHLELQSLKGNLIETISLME  220 (623)
Q Consensus       155 Eleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea-~al~~Ae~a~~ELe~lk~~laetl~lvE  220 (623)
                      ++...+.....--+.|..+-..+..++.++........ ........+..++..++..+...-..++
T Consensus       204 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~  270 (423)
T TIGR01843       204 ERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQ  270 (423)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333333333344444555555555444332221 1112234444555555555544333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=86.56  E-value=1e+02  Score=39.08  Aligned_cols=76  Identities=21%  Similarity=0.293  Sum_probs=55.2

Q ss_pred             CchhhhHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 006962           69 SRISELESQVSRLQEDLKKAKNQL---SSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKV  144 (623)
Q Consensus        69 ~r~seLesql~q~QeeLkkaKeQL---~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~  144 (623)
                      +=+.-+.|....+++-|+..|.-|   +.+...=.++...+++.++|+.++...|-.....++....+..+.-.+|.-|
T Consensus      1194 Gv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesL 1272 (1758)
T KOG0994|consen 1194 GVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESL 1272 (1758)
T ss_pred             cCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHH
Confidence            345566777777888888888777   3455666778888999999999999888777777776666666555555443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.37  E-value=3.1  Score=40.87  Aligned_cols=66  Identities=32%  Similarity=0.506  Sum_probs=38.9

Q ss_pred             HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhh
Q 006962          384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDK  458 (623)
Q Consensus       384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dk  458 (623)
                      .+|..++..+...|..|...|=.|..-++.+.+|.-.|+.+..         -++..+.++..+=.+|=..+|++
T Consensus       119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~---------~~e~k~~~l~~En~~Lv~Rwm~~  184 (194)
T PF08614_consen  119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN---------MLEEKLRKLEEENRELVERWMQR  184 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666667777777776677766777666666666653         23444444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=85.96  E-value=35  Score=33.06  Aligned_cols=78  Identities=24%  Similarity=0.406  Sum_probs=50.9

Q ss_pred             HHHHHHhhhhh-------HHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhh
Q 006962          386 LEAELQKAKSD-------IEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDK  458 (623)
Q Consensus       386 LeaELKk~ksd-------IeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dk  458 (623)
                      ...+||..++.       |..|-+.|-.-++.+..+.-+|++-+.+                +-.+..+|..+..+|-+.
T Consensus         8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e----------------ie~L~~el~~lt~el~~L   71 (140)
T PF10473_consen    8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAE----------------IETLEEELEELTSELNQL   71 (140)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH
Confidence            44455555544       4444555555555555555555544433                445667788888888888


Q ss_pred             HHHHhhHHHhhHHHHHHhchh
Q 006962          459 ETELQNISEENEMLKLEISKR  479 (623)
Q Consensus       459 e~elq~~~~ene~Lk~e~~k~  479 (623)
                      +.+|.++..|++.|-.++.+.
T Consensus        72 ~~EL~~l~sEk~~L~k~lq~~   92 (140)
T PF10473_consen   72 ELELDTLRSEKENLDKELQKK   92 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999998888743

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=85.87  E-value=87  Score=37.54  Aligned_cols=94  Identities=22%  Similarity=0.399  Sum_probs=57.5

Q ss_pred             HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhh--hhhhhhhhhhHHHHH--------------------
Q 006962          384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD--KNLMCQRESQLNNDL--------------------  441 (623)
Q Consensus       384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~--~~~~~~ke~el~~~l--------------------  441 (623)
                      .....+||+...||..-|+.=+--=.+.+++-+.|--|+-+++  +..-.++-.++.-.|                    
T Consensus       509 ~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq  588 (786)
T PF05483_consen  509 SDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQ  588 (786)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHH
Confidence            3456667777777776665443333344445555544444432  111111112333333                    


Q ss_pred             -HhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962          442 -RKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  477 (623)
Q Consensus       442 -~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~  477 (623)
                       +-+...+..|+.+...|.+-+..+-.+|..||+++.
T Consensus       589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~  625 (786)
T PF05483_consen  589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT  625 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence             334455889999999999999999999999999986

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=85.58  E-value=35  Score=32.70  Aligned_cols=121  Identities=23%  Similarity=0.310  Sum_probs=80.9

Q ss_pred             hhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHH
Q 006962          395 SDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKL  474 (623)
Q Consensus       395 sdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~  474 (623)
                      ..|-.|-..+..+|.++.++.--                -.-|+.+|-++...+..++..+.+.+.....    |+.|..
T Consensus        21 ~~~K~le~~~~~~E~EI~sL~~K----------------~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~r   80 (143)
T PF12718_consen   21 AKVKQLEQENEQKEQEITSLQKK----------------NQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNR   80 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHh
Confidence            33444444555556555554333                3456677778888889999988888765433    224444


Q ss_pred             HhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 006962          475 EISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRL  546 (623)
Q Consensus       475 e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrL  546 (623)
                      .|.-.|           -+++.+...=.++.-||..+.--++.+-+++..+-.+.+.-+.-.++|+.-++-+
T Consensus        81 riq~LE-----------eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   81 RIQLLE-----------EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             hHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            444211           2445666666788888888888999999999999888888888888887665543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=85.48  E-value=40  Score=34.75  Aligned_cols=143  Identities=24%  Similarity=0.303  Sum_probs=79.1

Q ss_pred             HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHH-hhhHHHHHHHHHHHHhHHHHHHHHhhh
Q 006962          217 SLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAY-SSIASELERSRTRINLLEGLVSKLEAD  295 (623)
Q Consensus       217 ~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~-~sl~~eLe~S~~r~~~LE~lvskLq~~  295 (623)
                      -.|..+...+.+.++.-|++.+..-.+.++|+.....++-+..-...+...= ..|..+.=   .+.+.||..+..++..
T Consensus        31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al---~~~~~le~~~~~~~~~  107 (225)
T COG1842          31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREAL---EEKQSLEDLAKALEAE  107 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            3566777777888888888888888888888887777776666555444321 22222221   3666667777766654


Q ss_pred             hhccccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhh-----hhhhhhHH--HHhhH
Q 006962          296 TSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN-----EGQIQSTV--KIKSA  368 (623)
Q Consensus       296 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~q-----EE~i~st~--~i~~a  368 (623)
                      ....+                       .-...|+..+..+...|.++|+-+...-.+++     +-...+.-  ..-++
T Consensus       108 ~~~~~-----------------------~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa  164 (225)
T COG1842         108 LQQAE-----------------------EQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSA  164 (225)
T ss_pred             HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhh
Confidence            33222                       11223444455555555555555555444442     11111111  11467


Q ss_pred             HHHHHHHhhhcccchHH
Q 006962          369 FEQLEQIKHQSGLREVE  385 (623)
Q Consensus       369 ye~~e~~Kses~qRE~E  385 (623)
                      |..+++|+.-...+|..
T Consensus       165 ~~~fer~e~kiee~ea~  181 (225)
T COG1842         165 MAAFERMEEKIEEREAR  181 (225)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777776655555543

>smart00787 Spc7 Spc7 kinetochore protein

Probab=85.42  E-value=57  Score=35.08  Aligned_cols=84  Identities=23%  Similarity=0.228  Sum_probs=54.5

Q ss_pred             HHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhccccccccCCCCCccchhhhhhhhhhhhhhhHHHH
Q 006962          253 SVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEE  332 (623)
Q Consensus       253 tve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~E  332 (623)
                      +++.|..|...+......+..-+...+.+++.|...+..|+......                   ..+...+.+.+.++
T Consensus       152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~-------------------~~~d~~eL~~lk~~  212 (312)
T smart00787      152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL-------------------EDCDPTELDRAKEK  212 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------------------HhCCHHHHHHHHHH
Confidence            45666666666666666777777777778888888888877643311                   12234456667777


Q ss_pred             HhhchhhHHHHHHHHHHHHHhhh
Q 006962          333 LSSLKSEVGQLRSALEIAETKLN  355 (623)
Q Consensus       333 L~s~ksEIeeLRsaLe~~Etr~q  355 (623)
                      |.....+|+..+..|+..+.+++
T Consensus       213 l~~~~~ei~~~~~~l~e~~~~l~  235 (312)
T smart00787      213 LKKLLQEIMIKVKKLEELEEELQ  235 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777765555443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.75  E-value=12  Score=37.89  Aligned_cols=60  Identities=25%  Similarity=0.334  Sum_probs=43.2

Q ss_pred             CchhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 006962           69 SRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELS  131 (623)
Q Consensus        69 ~r~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~S  131 (623)
                      .|+..|+.++..++.+|..+..+..   ..+...++.+..+..+..++..+....+.++....
T Consensus        93 ~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~  152 (206)
T PRK10884         93 TRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQ  152 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688888888888888887776653   55666777777777777777776666666665533

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=84.72  E-value=44  Score=36.10  Aligned_cols=124  Identities=18%  Similarity=0.223  Sum_probs=68.4

Q ss_pred             HhhchhhHHHHHHHHHHHHHhhh---hhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhh
Q 006962          333 LSSLKSEVGQLRSALEIAETKLN---EGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKET  409 (623)
Q Consensus       333 L~s~ksEIeeLRsaLe~~Etr~q---EE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEt  409 (623)
                      ..-+...+.+++..|..+|.+++   +++.-..+.                .+-.-....|..+...+....+.+++.+.
T Consensus       173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~----------------~~~~~~~~~l~~l~~~l~~~~~~~~~~~~  236 (444)
T TIGR03017       173 ALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSD----------------ERLDVERARLNELSAQLVAAQAQVMDASS  236 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC----------------cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556678888888888888774   333221110                00011122344555555555566665555


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhc
Q 006962          410 ELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  477 (623)
Q Consensus       410 ELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~  477 (623)
                      .+.+... ...+ ..+   ..+.--..|..+|..+..++..|....-++--.++.+..+.+.|+.+|.
T Consensus       237 ~~~~~~~-~~~~-~~~---~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~  299 (444)
T TIGR03017       237 KEGGSSG-KDAL-PEV---IANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLN  299 (444)
T ss_pred             HHhccCC-cccc-hhh---hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence            5543211 1111 111   1112234566777777777777777777777777777777777877776

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=84.68  E-value=1.2e+02  Score=38.01  Aligned_cols=29  Identities=21%  Similarity=0.380  Sum_probs=19.0

Q ss_pred             hhHHHHHhhchhhHHHHHHHHHHHHHhhh
Q 006962          327 KHLEEELSSLKSEVGQLRSALEIAETKLN  355 (623)
Q Consensus       327 ~~Le~EL~s~ksEIeeLRsaLe~~Etr~q  355 (623)
                      .++..|.+--++||+.+|+.|.+.-.++.
T Consensus       326 ~~~~~e~~~~d~Ei~~~r~~~~~~~re~~  354 (1074)
T KOG0250|consen  326 GELKDEVDAQDEEIEEARKDLDDLRREVN  354 (1074)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            33555566677777777777776665553

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=84.32  E-value=64  Score=34.68  Aligned_cols=97  Identities=24%  Similarity=0.259  Sum_probs=73.9

Q ss_pred             HHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhh
Q 006962          346 ALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL  425 (623)
Q Consensus       346 aLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei  425 (623)
                      .||++=.-|++||..+-             +.-|.-|-++|+.+|-=-|+.-+|||-+--              .|..-|
T Consensus       214 ~LMAKCR~L~qENeElG-------------~q~s~Gria~Le~eLAmQKs~seElkssq~--------------eL~dfm  266 (330)
T KOG2991|consen  214 MLMAKCRTLQQENEELG-------------HQASEGRIAELEIELAMQKSQSEELKSSQE--------------ELYDFM  266 (330)
T ss_pred             HHHHHHHHHHHHHHHHH-------------hhhhcccHHHHHHHHHHHHhhHHHHHHhHH--------------HHHHHH
Confidence            35555555566666554             667889999999999999999999986531              222222


Q ss_pred             hhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhch
Q 006962          426 DKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK  478 (623)
Q Consensus       426 ~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k  478 (623)
                               .+|..+...+...|--|-..|..+++++|.+...|+.++.-++-
T Consensus       267 ---------~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d  310 (330)
T KOG2991|consen  267 ---------EELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGD  310 (330)
T ss_pred             ---------HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                     35666677777888899999999999999999999999887763

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=84.01  E-value=54  Score=33.64  Aligned_cols=94  Identities=26%  Similarity=0.253  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHhhhcHHHHHHHHHHHHHHhhHhhhhH-HHHHHHHHHHHHHHHH
Q 006962          173 ALNELQQLKAQFEMVAESEAAQTKNAESAH--LELQSLKGNLIETISLMENMKNQLRESKESE-TQAQALARETLLQLET  249 (623)
Q Consensus       173 al~Eiq~LK~qL~~~~esea~al~~Ae~a~--~ELe~lk~~laetl~lvE~lKs~l~e~keSe-Aqa~aL~~E~~~QLE~  249 (623)
                      -..||--||+||-++         |++-++  .+|-.||+.+-++=..++.....+.++..+- ....+| +.+...|..
T Consensus         8 k~GEIsLLKqQLke~---------q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~EL-E~ce~ELqr   77 (202)
T PF06818_consen    8 KSGEISLLKQQLKES---------QAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLEL-EVCENELQR   77 (202)
T ss_pred             hhhhHHHHHHHHHHH---------HHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhH-HHhHHHHHH
Confidence            356888889998763         444444  4677777777666666666666666665432 344444 566666666


Q ss_pred             hHhHHHHHHHhhhHHHHHHhhhHHHHH
Q 006962          250 AKLSVEALRAEGMKAIEAYSSIASELE  276 (623)
Q Consensus       250 akatve~L~adg~Ka~e~~~sl~~eLe  276 (623)
                      .+..++.|+-....+...+..|+.+|.
T Consensus        78 ~~~Ea~lLrekl~~le~El~~Lr~~l~  104 (202)
T PF06818_consen   78 KKNEAELLREKLGQLEAELAELREELA  104 (202)
T ss_pred             HhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence            666666666655555554555444444

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=82.94  E-value=42  Score=31.56  Aligned_cols=30  Identities=40%  Similarity=0.573  Sum_probs=19.4

Q ss_pred             HhhhcccchHHHHHHHHhhhhhHHHHHHhh
Q 006962          375 IKHQSGLREVELEAELQKAKSDIEELKANL  404 (623)
Q Consensus       375 ~Kses~qRE~ELeaELKk~ksdIeELKA~L  404 (623)
                      +++-..++-.-...++++..-+|.-||..|
T Consensus       120 lk~~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen  120 LKNQLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333334444556667788888888888766

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=82.40  E-value=85  Score=34.68  Aligned_cols=35  Identities=6%  Similarity=0.209  Sum_probs=20.4

Q ss_pred             hhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhch
Q 006962          509 GLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQS  550 (623)
Q Consensus       509 ~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQs  550 (623)
                      ..+..+++....+...+..+|..+       +..+.+..|-+
T Consensus       287 ~~~~~~l~~~~~~l~~~~~~l~~a-------~~~l~~~~I~A  321 (457)
T TIGR01000       287 AKVKQEITDLNQKLLELESKIKSL-------KEDSQKGVIKA  321 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhCCEEEC
Confidence            455666776655555555555544       45667776654

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=81.96  E-value=1.4e+02  Score=36.77  Aligned_cols=28  Identities=21%  Similarity=0.322  Sum_probs=20.1

Q ss_pred             HHHHHhhhhhHHHHHHhhcchhhhhhhh
Q 006962          387 EAELQKAKSDIEELKANLMDKETELQGI  414 (623)
Q Consensus       387 eaELKk~ksdIeELKA~LMDKEtELQ~I  414 (623)
                      ..||.++-..+.-+++-|.|-+-+|-+|
T Consensus       416 kneL~~a~ekld~mgthl~mad~Q~s~f  443 (1265)
T KOG0976|consen  416 KNELQEALEKLDLMGTHLSMADYQLSNF  443 (1265)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhH
Confidence            4556677666777788888888777665

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=81.84  E-value=29  Score=32.65  Aligned_cols=24  Identities=38%  Similarity=0.516  Sum_probs=19.5

Q ss_pred             HHhhchhhHHHHHHHHHHHHHhhh
Q 006962          332 ELSSLKSEVGQLRSALEIAETKLN  355 (623)
Q Consensus       332 EL~s~ksEIeeLRsaLe~~Etr~q  355 (623)
                      ++.....++..|+..+.+-+.||+
T Consensus        62 ~~~~~~~~~~~L~~el~~l~~ry~   85 (120)
T PF12325_consen   62 ELRALKKEVEELEQELEELQQRYQ   85 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455777888889999988888886

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=81.00  E-value=1.7e+02  Score=37.34  Aligned_cols=120  Identities=20%  Similarity=0.246  Sum_probs=76.4

Q ss_pred             HHHHhhHhhhhHHHHHHHHHHHHHHHHH---hHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHhhhhhc
Q 006962          222 MKNQLRESKESETQAQALARETLLQLET---AKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN  298 (623)
Q Consensus       222 lKs~l~e~keSeAqa~aL~~E~~~QLE~---akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskLq~~~a~  298 (623)
                      +-..-..+.+.+.....+ +..+.+|..   +=.|++-|+.+..+..+.+.-++.+++-++-.+..-+.+++.++..-..
T Consensus       787 ~~~~e~~~~d~~~~~k~i-e~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e  865 (1294)
T KOG0962|consen  787 VTVLERFLKDLKLREKEI-EELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNE  865 (1294)
T ss_pred             hHHHHHHHHHHHHHHHHH-HHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444554 666666665   3567799999999999999999999999999888888888888853110


Q ss_pred             cccccccCCCCCccchhhhhhhhhhhhhhhHHHHHhhchhhHHHHHHHHHHHHHhhh
Q 006962          299 ANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN  355 (623)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~q  355 (623)
                      ..             ..............+|+..+..+..+|..+.+.+-....+++
T Consensus       866 ~k-------------~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~  909 (1294)
T KOG0962|consen  866 LK-------------EEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQ  909 (1294)
T ss_pred             HH-------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence            00             111222223334444666677777777666666666666654

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=80.96  E-value=1.5e+02  Score=36.51  Aligned_cols=192  Identities=18%  Similarity=0.186  Sum_probs=96.7

Q ss_pred             hhhHHHHHHhhhcHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHH-----------HHHHHhhhHHHHH
Q 006962          199 ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSV-----------EALRAEGMKAIEA  267 (623)
Q Consensus       199 e~a~~ELe~lk~~laetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatv-----------e~L~adg~Ka~e~  267 (623)
                      ++-++-|+.+...|.|+++.++.-++-|.+-.   .+--.+|-+++..|++-+.|.           ..|..+.+++...
T Consensus       255 ~E~d~~lq~sak~ieE~m~qlk~kns~L~~El---SqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrq  331 (1265)
T KOG0976|consen  255 EEQDMDLQASAKEIEEKMRQLKAKNSVLGDEL---SQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQ  331 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            34445667777777777777766666655432   344455555555555554444           4466666666666


Q ss_pred             HhhhHHHHHHHHHHHHhHHHHHHHHhhh----hhccccccccCCCCCccchhhhhhhhhhh---hhhhHH---HHHhhch
Q 006962          268 YSSIASELERSRTRINLLEGLVSKLEAD----TSNANRNLSQNCSGDYDLGQKIKENQDTM---ESKHLE---EELSSLK  337 (623)
Q Consensus       268 ~~sl~~eLe~S~~r~~~LE~lvskLq~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---e~~~Le---~EL~s~k  337 (623)
                      .--++-+|-.++-.+..+-.....|+..    ..+++..        .+.. ...+..-++   ...+++   .+++.--
T Consensus       332 kadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i--------~e~k-~nve~elqsL~~l~aerqeQidelKn~i  402 (1265)
T KOG0976|consen  332 KADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSI--------QEKK-ENVEEELQSLLELQAERQEQIDELKNHI  402 (1265)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHH--------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6666666666666555554444444421    1111100        0000 000000000   011111   1333333


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhh---hHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHH
Q 006962          338 SEVGQLRSALEIAETKLNEGQIQ---STVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA  402 (623)
Q Consensus       338 sEIeeLRsaLe~~Etr~qEE~i~---st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA  402 (623)
                      +-.+++|-.-+++-.+||+-...   +--..--|-.+++++|..+..-++.-...+..-+.=|..+++
T Consensus       403 f~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~  470 (1265)
T KOG0976|consen  403 FRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRA  470 (1265)
T ss_pred             hhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHH
Confidence            34455555555666666543333   333444455677888887777777666555555555666654

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=80.82  E-value=36  Score=32.08  Aligned_cols=93  Identities=19%  Similarity=0.311  Sum_probs=68.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHH
Q 006962           71 ISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQ  150 (623)
Q Consensus        71 ~seLesql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~  150 (623)
                      +.-|.|+|++..-++--+++++...+..|..+.+|+-..-....++.+                         .+.+. .
T Consensus        18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-------------------------~~~~~-~   71 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA-------------------------LKKEV-E   71 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHH-H
Confidence            778999999999999999999988888888888777654433322211                         11111 1


Q ss_pred             hhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 006962          151 SCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAE  189 (623)
Q Consensus       151 ~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~e  189 (623)
                      .++.++..+++.|..=...|=.-..+++.|+..+.++++
T Consensus        72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~  110 (120)
T PF12325_consen   72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE  110 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            455667777777777777788888889999988888765

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=80.81  E-value=64  Score=32.48  Aligned_cols=28  Identities=36%  Similarity=0.547  Sum_probs=20.0

Q ss_pred             hhcchhhhhhhhhhhhhhhhhhhhhhhh
Q 006962          403 NLMDKETELQGISEENEGLHMQLDKNLM  430 (623)
Q Consensus       403 ~LMDKEtELQ~IsEENE~L~~ei~~~~~  430 (623)
                      .|.++-..|+.+..+|+.|..+|...+.
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~   48 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEEILE   48 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777777777888888888775433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	623
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	3e-04
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	8e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 73.3 bits (180), Expect = 1e-13
 Identities = 52/335 (15%), Positives = 118/335 (35%), Gaps = 12/335 (3%)

Query: 169  ALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRE 228
             + +   ELQ+ K + +          +       E   L+  L     L    +     
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 229  SKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGL 288
                + + + +  E   ++E  +   + L+AE  K  +    +  +LE        L+  
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977

Query: 289  VSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALE 348
                +        ++            + + N+ T E K LEE +S L + +        
Sbjct: 978  KVTADGKIKKMEDDILI---------MEDQNNKLTKERKLLEERVSDLTTNL-AEEEEKA 1027

Query: 349  IAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKE 408
               TKL         +++   ++ E+ + +    + +LE E       I EL+A + + +
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087

Query: 409  TELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEE 468
             +L    EE +    +L+      +++     +R+L   + DL+ +L  ++       ++
Sbjct: 1088 AQLAKKEEELQAALARLEDE--TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145

Query: 469  NEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKE 503
               L  E+   + +  +     A + E   S  K+
Sbjct: 1146 KRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 70.6 bits (173), Expect = 9e-13
 Identities = 55/319 (17%), Positives = 121/319 (37%), Gaps = 17/319 (5%)

Query: 65   RKRPSRISELESQVSRLQE---DLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQ 121
            ++   R  + E+++  L++    L + KN L      + +   +AE+ + +L A   +L+
Sbjct: 867  QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926

Query: 122  ESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLK 181
            E   +++     EE R+ +LQ   ++  Q      + ++           +A  +LQ  K
Sbjct: 927  EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE--------EEEAARQKLQLEK 978

Query: 182  AQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALAR 241
               +   +         E  + +L   +  L E +S +     +  E  ++ T+ +    
Sbjct: 979  VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHE 1038

Query: 242  ETLLQLETAKLSVEALRAEGMKAIEA----YSSIASELERSRTRINLLEGLVSKLEADTS 297
              + +LE      E  R E  K         S +  ++   + +I  L+  ++K E +  
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ 1098

Query: 298  NANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEG 357
             A   L    S   +  +KI+E +  +    L+E+L S K+   +          +L   
Sbjct: 1099 AALARLEDETSQKNNALKKIRELESHISD--LQEDLESEKAARNKAEKQKRDLSEELEAL 1156

Query: 358  QIQSTVKIKSAFEQLEQIK 376
            + +    + +   Q E   
Sbjct: 1157 KTELEDTLDTTATQQELRG 1175

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 58/346 (16%), Positives = 129/346 (37%), Gaps = 27/346 (7%)

Query: 110  KKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQ--ETDQSCQSELQAIQNQHSIDS 167
             ++L     + Q+++ +L+EL         E   + +  + +    +E + ++ + +   
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922

Query: 168  AALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLR 227
              L   L+E++    + E  ++   A+ K  +   L+L+            ++  K    
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 228  ESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEG 287
               +       +  +   +L   +  +E          E  S + + L     +   L  
Sbjct: 983  GKIKKMEDDILIMEDQNNKLTKERKLLE----------ERVSDLTTNLAEEEEKAKNLTK 1032

Query: 288  LVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKH-LEEELSSLKSEVGQLRSA 346
            L +K E+  S     L +            K  Q+  + K  LE E S L  ++ +L++ 
Sbjct: 1033 LKNKHESMISELEVRLKKE----------EKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082

Query: 347  LEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMD 406
            +   + +L + + +      +  E     K+ +  +  ELE+ +   + D+E  KA    
Sbjct: 1083 IAELKAQLAKKEEELQ-AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141

Query: 407  KETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLK 452
             E + + +SEE E L  +L+  L     +    +LR      +D K
Sbjct: 1142 AEKQKRDLSEELEALKTELEDTL---DTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 65/360 (18%), Positives = 139/360 (38%), Gaps = 32/360 (8%)

Query: 204  ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK 263
             L  +     E  +  E ++      +++E + + L ++     E   L  E L+AE   
Sbjct: 848  PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907

Query: 264  AIEAYSSIASELERSRTRINLLEGLVSKLE------ADTSNANRNLSQNCSGDYDLGQKI 317
              EA         + +    +L  + +++E             + + Q      DL +++
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML---DLEEQL 964

Query: 318  KENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKH 377
            +E +   +   L+ E  +   ++ ++   + I E + N+     T + K   E++  +  
Sbjct: 965  EEEEAARQK--LQLEKVTADGKIKKMEDDILIMEDQNNK----LTKERKLLEERVSDLTT 1018

Query: 378  QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQL 437
                 E E    L K K+  E + + L  +  + +   +E E +  +L+        S L
Sbjct: 1019 NLAEEE-EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES-----SDL 1072

Query: 438  NNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS---KRELDTPNMNSNLAAEV 494
            +  + +L   + +LKA L  KE ELQ      E    + +   K+  +  +  S+L  ++
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132

Query: 495  EAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWR 554
            E+ ++A  +A  +   L EE +        +  +LE         + ELR    + D  +
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELEA-------LKTELEDTLDTT-ATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.5 bits (157), Expect = 8e-11
 Identities = 38/269 (14%), Positives = 90/269 (33%), Gaps = 6/269 (2%)

Query: 65   RKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQ 124
             +  ++  ELE  +  ++  +++ + +    ++ K++ QQ   D ++QL    +  Q+ Q
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975

Query: 125  KQLQELSASEEARAVELQKVSQETDQSCQ--SELQAIQNQHSIDSAALASALNELQQLKA 182
             +        +    ++  +  + ++  +    L+   +  + + A        L +LK 
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035

Query: 183  QFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE 242
            + E +      + K  E +  EL+ +K  L    S +     +L+          A   E
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095

Query: 243  TLLQLETAKLSVEALRAEGMKAI----EAYSSIASELERSRTRINLLEGLVSKLEADTSN 298
             L           + +   +K I       S +  +LE  +   N  E     L  +   
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 299  ANRNLSQNCSGDYDLGQKIKENQDTMESK 327
                L           +    +    + K
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 12/221 (5%)

Query: 344  RSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN 403
              A +    +  E Q ++  ++K   ++  Q+  +  L + +L+AE +    + EE++  
Sbjct: 859  MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA-EAEEMRVR 917

Query: 404  LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 463
            L  K+ EL+ I  E     M+       +R  QL  + +K+ Q + DL+  L ++E   Q
Sbjct: 918  LAAKKQELEEILHE-----MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972

Query: 464  NISEENEMLKLEISKRELDTPNM---NSNLAAEVEAARSAEKEALMKLGLLMEEAD---K 517
             +  E      +I K E D   M   N+ L  E +       +    L    E+A    K
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032

Query: 518  SNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAE 558
               +   M  +LE       ++  EL ++K + +       
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLH 1073

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 5e-12
 Identities = 71/554 (12%), Positives = 150/554 (27%), Gaps = 143/554 (25%)

Query: 7   RSGSSEAPLKVS-PRAVRQLNTTALESKSAS------------SS--NQTCRTPKDKSPK 51
                 A   VS  +   +L    LE + A             +      C + K     
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK----- 175

Query: 52  VIDRRSPRS----PVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAE 107
            +  +         +     P  + E    + +L   +       S   S  +      +
Sbjct: 176 -VQCKMDFKIFWLNLKNCNSPETVLE---MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 108 DSKKQLLALSSKLQESQKQLQELSASEEARAVELQ-KVSQET-DQSCQSELQAIQNQH-S 164
              ++LL  S   +     L  +  ++   A  L  K+   T  +     L A    H S
Sbjct: 232 AELRRLLK-SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 165 IDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGN--LIETIS-LMEN 221
           +D  ++    +E++ L  ++      +           L  + L  N   +  I+  + +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQD-----------LPREVLTTNPRRLSIIAESIRD 339

Query: 222 MKNQLRESKESETQAQALARETLLQLETA-KLSVEALRAEGMKAIEAYSSIA-------- 272
                   K               +L T  + S+  L     +  + +  ++        
Sbjct: 340 GLATWDNWKHVNCD----------KLTTIIESSLNVLEPAEYR--KMFDRLSVFPPSAHI 387

Query: 273 ---------SELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDT 323
                     ++ +S   + ++  L        S   +   ++      +  ++K   + 
Sbjct: 388 PTILLSLIWFDVIKSDVMV-VVNKLHKY-----SLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 324 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIK------- 376
             + H               RS ++                I   F+  + I        
Sbjct: 442 EYALH---------------RSIVD-------------HYNIPKTFDSDDLIPPYLDQYF 473

Query: 377 ------HQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD--KN 428
                 H   +   E     +    D   L+  +    T           L  QL   K 
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKP 532

Query: 429 LMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNS 488
            +C       ND  K  + V  +   L   E  L   S+  ++L++ +         M  
Sbjct: 533 YICD------ND-PKYERLVNAILDFLPKIEENLIC-SKYTDLLRIAL---------MAE 575

Query: 489 NLAAEVEAARSAEK 502
           + A   EA +  ++
Sbjct: 576 DEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 74/513 (14%), Positives = 146/513 (28%), Gaps = 143/513 (27%)

Query: 160 QNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNL----IET 215
            + H +D         E  Q + + ++++  E A   N +   ++    K  L    I+ 
Sbjct: 2   HHHHHMDFE-----TGE-HQYQYK-DILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDH 53

Query: 216 ISLMENMKNQLR------ESKESETQAQALARETLLQLETAKLSVEALRAEGMK---AIE 266
           I + ++  +          SK+ E   + +  E +L++    L +  ++ E  +      
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--EEVLRINYKFL-MSPIKTEQRQPSMMTR 110

Query: 267 AYSSIASEL--------ERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIK 318
            Y      L        + + +R+     L   L       N  +     G    G    
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----GVLGSG---- 162

Query: 319 ENQDTMESKHLEEELSSLKSEVGQLRSALEIAETK---LNEGQIQSTVKIKSAFEQLEQI 375
                   K      + +  +V          + K   LN     S   +    E L+++
Sbjct: 163 --------K------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV---LEMLQKL 205

Query: 376 KHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDK-------- 427
            +Q               K  I  ++A L      L         L + L          
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAEL----RRLLKSKPYENCL-LVLLNVQNAKAWN 260

Query: 428 --NLMCQ-----RESQLNNDLRKLAQ---AVEDLKANLMDKETELQNISEENEML--KLE 475
             NL C+     R  Q+ + L        +++     L   E +         +L   L+
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--------SLLLKYLD 312

Query: 476 ISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEE-ADKSNR-------RAARMAE 527
              ++L  P             R        +L ++ E   D              ++  
Sbjct: 313 CRPQDL--P-------------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 528 QLEAAQSANCEAEAELRRL---------------KVQSDQWRKAAEAAASMLSTGNNGKC 572
            +E+  S N    AE R++                + S  W    ++   ++      K 
Sbjct: 358 IIES--SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN----KL 411

Query: 573 MERSGSIDSNYNPITGKIPLPYSDDIDDDLLKK 605
            + S  ++      T  IP      I  +L  K
Sbjct: 412 HKYS-LVEKQPKESTISIP-----SIYLELKVK 438

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 25/160 (15%), Positives = 65/160 (40%), Gaps = 3/160 (1%)

Query: 72   SELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELS 131
              LE+++ +LQ  + +   +  S        +       ++L +   +L+ S+++ +  +
Sbjct: 924  IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT 983

Query: 132  ASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESE 191
                +   E+ K+ +E  Q+ Q+E + I+             ++EL++     +   E E
Sbjct: 984  NRVLSLQEEIAKLRKELHQT-QTEKKTIEEWADKYKHETEQLVSELKEQNTLLK--TEKE 1040

Query: 192  AAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKE 231
                +  + A    ++++  L+E    +E   N  R   +
Sbjct: 1041 ELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 18/176 (10%)

Query: 80   RLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAV 139
            R  E  KK    L   E+   Q Q+  ++  K+  +L  K+   +      +    +   
Sbjct: 914  RSVERYKKLHIGL---ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 140  ELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAE 199
             L+   +        E +   N+       + S   E+ +L+ +       +    + A+
Sbjct: 971  RLRMSEE--------EAKNATNR-------VLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015

Query: 200  SAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVE 255
                E + L   L E  +L++  K +L      + +      E  L  ET +L ++
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 39/267 (14%), Positives = 88/267 (32%), Gaps = 46/267 (17%)

Query: 83   EDLKKAKNQLSSSESWK-QQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVEL 141
            + + +    +   +  +   A+     + K ++ L    +    + +      EAR+VE 
Sbjct: 859  QMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER 918

Query: 142  QKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESA 201
             K      ++   +LQ                    +++  Q +              + 
Sbjct: 919  YKKLHIGLENKIMQLQ--------------------RKIDEQNKEYKSLLEKMNNLEITY 958

Query: 202  HLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEG 261
              E + L+       S +E ++    E+K +  +  +L  E    +   +  +   + E 
Sbjct: 959  STETEKLR-------SDVERLRMSEEEAKNATNRVLSLQEE----IAKLRKELHQTQTEK 1007

Query: 262  MKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQ 321
                E       E E+    ++ L+   + L+ +    NR +            + KE  
Sbjct: 1008 KTIEEWADKYKHETEQ---LVSELKEQNTLLKTEKEELNRRIH----------DQAKEIT 1054

Query: 322  DTMESKHLEEELSSLKSEVGQLRSALE 348
            +TME K L EE   L+ ++   R   +
Sbjct: 1055 ETMEKK-LVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 17/137 (12%), Positives = 51/137 (37%), Gaps = 1/137 (0%)

Query: 70   RISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQE 129
                L  +++ L+        +L S     + ++++A+++  ++L+L  ++ + +K+L +
Sbjct: 943  EYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002

Query: 130  LSASEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAE 189
                ++       K   ET+Q      +      +          ++ +++    E    
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062

Query: 190  SEAAQTKNAESAHLELQ 206
             E  Q    +     L+
Sbjct: 1063 EETKQ-LELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 29/246 (11%), Positives = 81/246 (32%), Gaps = 15/246 (6%)

Query: 327  KHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVEL 386
            + + +   +L++ +       +          I     ++    ++   +    +  ++ 
Sbjct: 836  QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895

Query: 387  EAELQKAKSDIEELK--ANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKL 444
                  AK ++++LK  A  +++  +L  I  EN+ + +Q   +   +    L   +  L
Sbjct: 896  CYRRMMAKRELKKLKIEARSVERYKKLH-IGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954

Query: 445  AQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEA 504
                      L      L+   EE +     +   + +   +   L       ++ E+ A
Sbjct: 955  EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014

Query: 505  L---MKLGLLMEEADKSNRRAARMAEQLE---------AAQSANCEAEAELRRLKVQSDQ 552
                 +   L+ E  + N       E+L            ++   +   E ++L++  + 
Sbjct: 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074

Query: 553  WRKAAE 558
             R   +
Sbjct: 1075 ERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 37/219 (16%), Positives = 82/219 (37%), Gaps = 18/219 (8%)

Query: 359  IQSTVKIKSAFEQLEQIKH-----QSGLR----EVELEAELQKAKSDIEELKANLMDKET 409
            IQ   ++    ++ + ++      Q+ LR      + +  L++ KS I +          
Sbjct: 822  IQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARV 881

Query: 410  ELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ-NISEE 468
                  +    L     + +M +RE +      +  +  + L   L +K  +LQ  I E+
Sbjct: 882  HYHRTLKAIVYLQCCY-RRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ 940

Query: 469  NEM---LKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARM 525
            N+    L  +++  E+        L ++VE  R +E+EA                  A++
Sbjct: 941  NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA----KNATNRVLSLQEEIAKL 996

Query: 526  AEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASML 564
             ++L   Q+     E    + K +++Q     +   ++L
Sbjct: 997  RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 29/199 (14%), Positives = 78/199 (39%), Gaps = 4/199 (2%)

Query: 100  QQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSELQAI 159
             + +   E+ +  L     KL++++ Q+++L  S   +  EL   +++ +Q  + ++   
Sbjct: 1909 NEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLK-QMVQD 1967

Query: 160  QNQHSI---DSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETI 216
            Q    I   D+  L   L+   +  A  ++ A ++  + +       E++ L+    E  
Sbjct: 1968 QQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELK 2027

Query: 217  SLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE 276
               + +   +   ++S    +      + + E  K     ++ +  ++I    ++ SE  
Sbjct: 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087

Query: 277  RSRTRINLLEGLVSKLEAD 295
            R   +       +S +  D
Sbjct: 2088 RWEQQSENFNTQMSTVVGD 2106

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 9/195 (4%)

Query: 73  ELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSA 132
           E+          L KA++Q    ++    +  D +  +         LQ S +   E++ 
Sbjct: 607 EMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITT 666

Query: 133 SEEARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEA 192
           + +  A + +    E +   + E Q I +Q   ++      L EL+ +    E    ++A
Sbjct: 667 NSQEAAAKHEAQRLEQEARGRLERQKILDQ--SEAEKARKELLELEAMSMAVESTGNAKA 724

Query: 193 AQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKL 252
                AE+A +E +        ++   +     L    E+E +     RE  L    A+L
Sbjct: 725 EAESRAEAARIEGE-------GSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQL 777

Query: 253 SVEALRAEGMKAIEA 267
            +E  +A+ +  +EA
Sbjct: 778 ELEVSKAQQLANVEA 792

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 41.4 bits (96), Expect = 8e-04
 Identities = 55/421 (13%), Positives = 133/421 (31%), Gaps = 34/421 (8%)

Query: 10  SSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVIDRRSPRSPVSERKRPS 69
               P KV  +   ++N   L++K   S+       + K    I+        +E+    
Sbjct: 297 RLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEE 356

Query: 70  RISELESQVSRLQEDLKKAKNQLSSSESW---KQQAQQDAEDSKKQLLALSSKLQESQKQ 126
            +     ++ RL    +K + + S  ESW   K+   Q  +     L  + + L++ +  
Sbjct: 357 WLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAF 416

Query: 127 LQELSASEE------ARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQL 180
             +L+A ++      A A EL ++      S  +  Q I +Q     A        L++ 
Sbjct: 417 ESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERT 476

Query: 181 KAQFEMVAESEAAQTKNAESAHLELQSLKGNL--IETISLMENMKNQLRESKESETQAQA 238
           +   E + +      K A   +  ++    +L     +  +E ++      ++ +     
Sbjct: 477 EKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPD 536

Query: 239 LARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN 298
             +E    L       + ++   +             +    +   +  LV + +     
Sbjct: 537 ADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALME 596

Query: 299 ANRNLSQNCSGDY-------DLGQKIKENQDTMES----------------KHLEEELSS 335
            +    QN             +G  I+   + +                  +  E+ + +
Sbjct: 597 EHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVN 656

Query: 336 LKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKS 395
            K ++ QL    +  +  L      +   ++      EQ+         E+E ++    +
Sbjct: 657 YKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDA 716

Query: 396 D 396
            
Sbjct: 717 K 717

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	623
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.58
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.99
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.52
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.11
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	94.52
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	94.38
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	92.63
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	91.55
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	88.72
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	87.71
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	87.56
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	85.31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	84.82
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	84.69
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	83.43
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	82.82
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	81.21
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	80.31

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.58  E-value=0.00042  Score=63.77  Aligned_cols=27  Identities=4%  Similarity=0.191  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHhhhhhchH
Q 006962          525 MAEQLEAAQSANCEAEAELRRLKVQSD  551 (623)
Q Consensus       525 ~~EqL~aaq~a~~elEaElrrLrVQse  551 (623)
                      +..++...+..-..++..+.+++++.+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (284)
T 1c1g_A          249 LEKSIDDLEDELYAQKLKYKAISEELD  275 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333444444444433

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.15  E-value=0.0046  Score=56.83  Aligned_cols=18  Identities=0%  Similarity=0.139  Sum_probs=7.6

Q ss_pred             HHHHHHhhhhhHHHHHHh
Q 006962          386 LEAELQKAKSDIEELKAN  403 (623)
Q Consensus       386 LeaELKk~ksdIeELKA~  403 (623)
                      +...+.++...+..+...
T Consensus       263 ~~~~~~~~~~~~~~~~~~  280 (284)
T 1c1g_A          263 QKLKYKAISEELDHALND  280 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333344444444444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.12  E-value=9.6e-06  Score=95.05  Aligned_cols=13  Identities=54%  Similarity=0.682  Sum_probs=0.0

Q ss_pred             hHHHhhHHHHHHh
Q 006962          464 NISEENEMLKLEI  476 (623)
Q Consensus       464 ~~~~ene~Lk~e~  476 (623)
                      .+..+.+.|+.+|
T Consensus      1148 ~L~~ele~L~~~I 1160 (1184)
T 1i84_S         1148 DLSEELEALKTEL 1160 (1184)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.99  E-value=1.5e-05  Score=93.43  Aligned_cols=25  Identities=32%  Similarity=0.272  Sum_probs=0.0

Q ss_pred             HHHHhhhhhHHHHHHhhcchhhhhh
Q 006962          388 AELQKAKSDIEELKANLMDKETELQ  412 (623)
Q Consensus       388 aELKk~ksdIeELKA~LMDKEtELQ  412 (623)
                      .++.++...+.+|...+-..+..++
T Consensus      1032 k~~~~le~el~ele~~le~~e~~~~ 1056 (1184)
T 1i84_S         1032 KLKNKHESMISELEVRLKKEEKSRQ 1056 (1184)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444433333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.52  E-value=0.37  Score=47.52  Aligned_cols=18  Identities=22%  Similarity=0.357  Sum_probs=10.2

Q ss_pred             HHHhhHHHhhHHHHHHhc
Q 006962          460 TELQNISEENEMLKLEIS  477 (623)
Q Consensus       460 ~elq~~~~ene~Lk~e~~  477 (623)
                      .+++.+..|.+.++..+.
T Consensus        90 kE~~aL~kEie~~~~~i~  107 (256)
T 3na7_A           90 RELRSLNIEEDIAKERSN  107 (256)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455555556666655554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.11  E-value=4.6  Score=52.90  Aligned_cols=183  Identities=10%  Similarity=0.106  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHhHHhhHHH
Q 006962           76 SQVSRLQEDLKKAKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQELSASEEARAVELQKVSQETDQSCQSE  155 (623)
Q Consensus        76 sql~q~QeeLkkaKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~Sa~e~sr~~Elqk~~q~~d~~wqsE  155 (623)
                      .-+.+-+.++...++.|       ..-.++|.++..|+.++..+|.+.|.++.+-+..=..-+.+|.+-.+        +
T Consensus      1906 ~ll~~K~~el~~~~~rl-------~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~--------~ 1970 (3245)
T 3vkg_A         1906 LLINEKRDQLEEEQLHL-------NIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ--------A 1970 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence            33444445555555555       55566677777777777777777666666655433334444433221        1


Q ss_pred             HHHHhhhhhccHHHHHHHHHHHHHHHHHHHH----H------HHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHH
Q 006962          156 LQAIQNQHSIDSAALASALNELQQLKAQFEM----V------AESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQ  225 (623)
Q Consensus       156 leavq~qhs~DsaaL~sal~Eiq~LK~qL~~----~------~esea~al~~Ae~a~~ELe~lk~~laetl~lvE~lKs~  225 (623)
                      .+..+..-..+-+.+.....+|+..|.+.+.    +      .+.-+.+......++.+|...+..|.+--.-|..|+.+
T Consensus      1971 ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~ 2050 (3245)
T 3vkg_A         1971 AEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEE 2050 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111111222222333333332210    0      01111222333445555666666665555555666666


Q ss_pred             hhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHH
Q 006962          226 LRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIAS  273 (623)
Q Consensus       226 l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~  273 (623)
                      ..+.-.-......-++.+..+|+.|..=|..|-.+-.+=.+.+..+..
T Consensus      2051 ~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A         2051 YATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence            555543334444445667777777777777777766666655444443

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=94.52  E-value=1.1  Score=42.31  Aligned_cols=76  Identities=22%  Similarity=0.279  Sum_probs=56.9

Q ss_pred             HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006962          384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ  463 (623)
Q Consensus       384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq  463 (623)
                      .+.+.++.+...+|++|=|+|||         +.|+|--..             ..+-..+..-+..|+..|.|++.-|.
T Consensus        75 ~~aE~~~~~ie~ElEeLTasLFe---------EAN~MVa~a-------------r~~~~~~e~r~~~L~~ql~e~~~~l~  132 (154)
T 2ocy_A           75 TKAEEEADKLNKEVEDLTASLFD---------EANNMVADA-------------RKEKYAIEILNKRLTEQLREKDTLLD  132 (154)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566788999999999999995         445543321             22334455677889999999999999


Q ss_pred             hHHHhhHHHHHHhchhhc
Q 006962          464 NISEENEMLKLEISKREL  481 (623)
Q Consensus       464 ~~~~ene~Lk~e~~k~e~  481 (623)
                      ++..+-..||.-+.+.+.
T Consensus       133 ~lq~ql~~LK~v~~~m~~  150 (154)
T 2ocy_A          133 TLTLQLKNLKKVMHSLDN  150 (154)
T ss_dssp             HHHHHHHHHHHTTSCCC-
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999988875543

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=94.38  E-value=3.7  Score=39.95  Aligned_cols=146  Identities=22%  Similarity=0.209  Sum_probs=77.4

Q ss_pred             hhhhhHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhHHHHHHHHhhhcccchHHHHHHHHhhhhhHHHHHHh
Q 006962          324 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN  403 (623)
Q Consensus       324 ~e~~~Le~EL~s~ksEIeeLRsaLe~~Etr~qEE~i~st~~i~~aye~~e~~Kses~qRE~ELeaELKk~ksdIeELKA~  403 (623)
                      .++..+...+...+..+.+|+..|.        |+..+                 |..=|.||+.+|..+...+-.|+..
T Consensus        10 ee~~ywk~~~~~~~q~~~~le~El~--------EFqes-----------------SrELE~ELE~eL~~~Ek~~~~L~~~   64 (189)
T 2v71_A           10 EETAYWKELSMKYKQSFQEARDELV--------EFQEG-----------------SRELEAELEAQLVQAEQRNRDLQAD   64 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666666666665        22223                 3444577777777777777777766


Q ss_pred             hcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccC
Q 006962          404 LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDT  483 (623)
Q Consensus       404 LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~  483 (623)
                      +.--..+++.+-..+...+.+.     ......|..+|..+......|+.       .|..+...|-.|-...-      
T Consensus        65 ~~~L~~E~e~~k~K~~~~~~e~-----~~~~~~Lq~el~~l~~~~~~l~~-------~ireLEq~NDdlEr~~R------  126 (189)
T 2v71_A           65 NQRLKYEVEALKEKLEHQYAQS-----YKQVSVLEDDLSQTRAIKEQLHK-------YVRELEQANDDLERAKR------  126 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHH------
Confidence            6544444444333333222221     12234455555555555555555       44445555655544443      


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006962          484 PNMNSNLAAEVEAARSAEKEALMKLGLLMEEADK  517 (623)
Q Consensus       484 ~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~  517 (623)
                           -+.+.++--..+=..|+-+..+|..|++.
T Consensus       127 -----~~~~SleD~e~kln~aiEr~alLE~El~E  155 (189)
T 2v71_A          127 -----ATIMSLEDFEQRLNQAIERNAFLESELDE  155 (189)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 23333333444445556666667777763

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=92.63  E-value=14  Score=48.73  Aligned_cols=162  Identities=15%  Similarity=0.141  Sum_probs=80.6

Q ss_pred             CchhhhHHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh----------hhhHH
Q 006962           69 SRISELESQVSRLQEDLKK---AKNQLSSSESWKQQAQQDAEDSKKQLLALSSKLQESQKQLQEL----------SASEE  135 (623)
Q Consensus        69 ~r~seLesql~q~QeeLkk---aKeQL~~sE~~K~~a~~eleEskkQl~e~SskLeesQkQ~~e~----------Sa~e~  135 (623)
                      .|..+++.+..+++-=|.|   |.+|.       ..++.+|.+-+.+|.+.+.+-++.=.+...+          ...++
T Consensus      1910 ~K~~el~~~~~rl~~GL~KL~et~~~V-------~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~ 1982 (3245)
T 3vkg_A         1910 EKRDQLEEEQLHLNIGLKKLRDTEAQV-------KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQ 1982 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466777777777655544   45555       5566666666666665554443321111111          11122


Q ss_pred             HHHHHHHHHhHHhHHhhHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHH
Q 006962          136 ARAVELQKVSQETDQSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIET  215 (623)
Q Consensus       136 sr~~Elqk~~q~~d~~wqsEleavq~qhs~DsaaL~sal~Eiq~LK~qL~~~~esea~al~~Ae~a~~ELe~lk~~laet  215 (623)
                      ..+.+.....+.+-..++.+|..+.-.     +=+   -.++..+..+|..+...-+..-......+..|+.++.+..+.
T Consensus      1983 ~~~~~~~~ei~~~k~~~e~dL~~A~Pa-----~Pk---r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A         1983 VQLDVRNKEIAVQKVKAYADLEKAEPT-----GPL---REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC------------CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCC-----ChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222233333344445554443311     000   022223333333322222222233334445677788888888


Q ss_pred             HHHHHHHHHHhhHhhhhHHHHHHHHHHHHH
Q 006962          216 ISLMENMKNQLRESKESETQAQALARETLL  245 (623)
Q Consensus       216 l~lvE~lKs~l~e~keSeAqa~aL~~E~~~  245 (623)
                      .+-.+.|+.++..|+.--.+|..|++.|-.
T Consensus      2055 ~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A         2055 IRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            888888888888888777888888755544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=91.55  E-value=11  Score=36.99  Aligned_cols=15  Identities=27%  Similarity=0.118  Sum_probs=6.1

Q ss_pred             HHHHHhhchhhHHHH
Q 006962          329 LEEELSSLKSEVGQL  343 (623)
Q Consensus       329 Le~EL~s~ksEIeeL  343 (623)
                      |.-|+..++.++..|
T Consensus        95 L~kEie~~~~~i~~l  109 (256)
T 3na7_A           95 LNIEEDIAKERSNQA  109 (256)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=88.72  E-value=13  Score=36.27  Aligned_cols=51  Identities=27%  Similarity=0.314  Sum_probs=21.8

Q ss_pred             HHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhh
Q 006962          401 KANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMD  457 (623)
Q Consensus       401 KA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~d  457 (623)
                      -++|-|-|+.|-.+.|.|-.|.+++...      ..|..++..+.+++.+||-.|..
T Consensus       129 ~~SleD~e~kln~aiEr~alLE~El~EK------e~l~~~~QRLkdE~rDLk~El~v  179 (189)
T 2v71_A          129 IMSLEDFEQRLNQAIERNAFLESELDEK------ESLLVSVQRLKDEARDLRQELAV  179 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHCCC----------------
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566677777777777777777777521      13444455555555555554433

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=87.71  E-value=2.1  Score=39.87  Aligned_cols=71  Identities=23%  Similarity=0.278  Sum_probs=41.2

Q ss_pred             HHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHHHh
Q 006962          384 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ  463 (623)
Q Consensus       384 ~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~elq  463 (623)
                      .+.+.++++...+|++|=|+|||         +.|+|--..             ..+-..+...+..|++.|.|++.-|.
T Consensus        63 ~~aE~~~~~ie~ElE~LTasLFe---------EAN~MVa~a-------------r~~~~~~e~r~~~L~~ql~e~e~ll~  120 (135)
T 2e7s_A           63 TKAEEEADKLNKEVEDLTASLFD---------EANNLVADA-------------RMEKYAIEILNKRLTEQLREKDMLLD  120 (135)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHH---------HHHHHHHHT-------------THHHHHHHHHHHHHHHTTTHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566788999999999999995         445543322             22234455677889999999999999


Q ss_pred             hHHHhhHHHHHHh
Q 006962          464 NISEENEMLKLEI  476 (623)
Q Consensus       464 ~~~~ene~Lk~e~  476 (623)
                      ++......||.-|
T Consensus       121 ~lq~QL~~LK~v~  133 (135)
T 2e7s_A          121 TLTLQLKNLKKVM  133 (135)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHHh
Confidence            9988888887654

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=87.56  E-value=12  Score=34.19  Aligned_cols=72  Identities=21%  Similarity=0.169  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 006962          213 IETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKL  292 (623)
Q Consensus       213 aetl~lvE~lKs~l~e~keSeAqa~aL~~E~~~QLE~akatve~L~adg~Ka~e~~~sl~~eLe~S~~r~~~LE~lvskL  292 (623)
                      -+||++...++|.-.=++.-=.+|+..+-.+..|--+.+.||..|++...+-+.          ++..+|++|++.|.+|
T Consensus        14 ~dGLrAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~eka----------q~q~~vqeLqgEI~~L   83 (121)
T 3mq7_A           14 RDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA----------QGQKKVEELEGEITTL   83 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence            588999999999888888777899999999999999999999999887665542          2234677777766665


Q ss_pred             hh
Q 006962          293 EA  294 (623)
Q Consensus       293 q~  294 (623)
                      .-
T Consensus        84 nq   85 (121)
T 3mq7_A           84 NH   85 (121)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=85.31  E-value=12  Score=44.42  Aligned_cols=20  Identities=15%  Similarity=0.275  Sum_probs=0.0

Q ss_pred             HhhhhhHHHHHHhhcchhhh
Q 006962          391 QKAKSDIEELKANLMDKETE  410 (623)
Q Consensus       391 Kk~ksdIeELKA~LMDKEtE  410 (623)
                      .++...|.+|...|-++|.+
T Consensus       924 ~~LE~kl~eLq~rL~~~e~~  943 (1080)
T 2dfs_A          924 IGLENKIMQLQRKIDEQNKE  943 (1080)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.82  E-value=3.5  Score=43.87  Aligned_cols=49  Identities=14%  Similarity=0.222  Sum_probs=34.3

Q ss_pred             hHHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCC
Q 006962          436 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTP  484 (623)
Q Consensus       436 el~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~  484 (623)
                      +...+++.++.++..|...+......++.+.+||..++.++++.+...+
T Consensus       534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~  582 (597)
T 3oja_B          534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN  582 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445556666777777777777777888888888888888876554433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=84.69  E-value=22  Score=42.21  Aligned_cols=28  Identities=21%  Similarity=0.278  Sum_probs=19.1

Q ss_pred             hHHHHHhhchhhHHHHHHHHHHHHHhhh
Q 006962          328 HLEEELSSLKSEVGQLRSALEIAETKLN  355 (623)
Q Consensus       328 ~Le~EL~s~ksEIeeLRsaLe~~Etr~q  355 (623)
                      .|+..++.+..|...||..+++-|...+
T Consensus      1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A         1020 ETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3666677777777777777777765444

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.43  E-value=4.7  Score=35.66  Aligned_cols=23  Identities=35%  Similarity=0.575  Sum_probs=19.8

Q ss_pred             HHHHHHHHhhhhhHHHHHHhhcc
Q 006962          384 VELEAELQKAKSDIEELKANLMD  406 (623)
Q Consensus       384 ~ELeaELKk~ksdIeELKA~LMD  406 (623)
                      .+.+.+++++..+|++|=|+|||
T Consensus        43 ~~aE~~~~~ie~ElEeLTasLFe   65 (97)
T 2eqb_B           43 TKAEEEADKLNKEVEDLTASLFD   65 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667788999999999999995

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.82  E-value=17  Score=38.63  Aligned_cols=128  Identities=14%  Similarity=0.124  Sum_probs=66.0

Q ss_pred             HHHHHHhhHHHHHHHHHhhhhhHHHHhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006962          437 LNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEAD  516 (623)
Q Consensus       437 l~~~l~~~~~~v~~LKa~L~dke~elq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~  516 (623)
                      +..++..++..|..|++.+...+..++....+.+..+..+.....+.....+.....+...+........++-...++.+
T Consensus       454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (597)
T 3oja_B          454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEAD  533 (597)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence            33444455566666666666666666666666666555544322222222233333333333333333444444444444


Q ss_pred             HhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHhh
Q 006962          517 KSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASML  564 (623)
Q Consensus       517 ~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaAaa~L  564 (623)
                      +-......+..+.+..+..-.++..-+.+|+-+...|+.--..--..+
T Consensus       534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444445555555555555555666666666666666665544444444

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=81.21  E-value=37  Score=32.08  Aligned_cols=129  Identities=21%  Similarity=0.275  Sum_probs=73.5

Q ss_pred             chHHHHHHHHhhhhhHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHhhhhhHHH
Q 006962          382 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETE  461 (623)
Q Consensus       382 RE~ELeaELKk~ksdIeELKA~LMDKEtELQ~IsEENE~L~~ei~~~~~~~ke~el~~~l~~~~~~v~~LKa~L~dke~e  461 (623)
                      |.+.|+-+|-.+..+++..++..    ..|..+.++...|..+.         .....++.++...+.+=++.-.+-|.+
T Consensus        14 ~qs~LeD~L~~~R~el~~~~~ri----~~lE~~r~~~~~l~~~~---------~~~~~e~~~L~~~l~~E~~~R~~aE~~   80 (154)
T 2ocy_A           14 KQSHLEEQLNKSLKTIASQKAAI----ENYNQLKEDYNTLKREL---------SDRDDEVKRLREDIAKENELRTKAEEE   80 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHTHH---------HHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             hhccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777665532    23333333333332221         235566666666666666666777778


Q ss_pred             HhhHHHhhHHHHHHhchhhccCCccchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 006962          462 LQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEA  541 (623)
Q Consensus       462 lq~~~~ene~Lk~e~~k~e~~~~~~~~ea~~~~e~Ak~ae~ea~~kl~~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEa  541 (623)
                      ...+..|.+.|--.+=          +||.-.+..|+.+-..+-              .|...+.+||.-.+.--.-+..
T Consensus        81 ~~~ie~ElEeLTasLF----------eEAN~MVa~ar~~~~~~e--------------~r~~~L~~ql~e~~~~l~~lq~  136 (154)
T 2ocy_A           81 ADKLNKEVEDLTASLF----------DEANNMVADARKEKYAIE--------------ILNKRLTEQLREKDTLLDTLTL  136 (154)
T ss_dssp             HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888887755543          355555555543333333              3445555555555555555555


Q ss_pred             HHhhhh
Q 006962          542 ELRRLK  547 (623)
Q Consensus       542 ElrrLr  547 (623)
                      .|..||
T Consensus       137 ql~~LK  142 (154)
T 2ocy_A          137 QLKNLK  142 (154)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            565555

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=80.31  E-value=2.5  Score=36.36  Aligned_cols=52  Identities=27%  Similarity=0.355  Sum_probs=33.5

Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHh
Q 006962          510 LLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASM  563 (623)
Q Consensus       510 ~~~ee~~~s~~~~ar~~EqL~aaq~a~~elEaElrrLrVQseQWRKAAeaAaa~  563 (623)
                      .|.||+.+-..---...-+|.-++.-|.+|.+||++|+.+.+..|  ++.++||
T Consensus        28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq--~~~~~~~   79 (81)
T 1wt6_A           28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ--AEGATAV   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccchhhc
Confidence            355666322222222336899999999999999999999999977  5555555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00