Citrus Sinensis ID: 006981
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 623 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WLC6 | 1089 | Pentatricopeptide repeat- | yes | no | 0.966 | 0.552 | 0.699 | 0.0 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.698 | 0.549 | 0.260 | 6e-36 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.640 | 0.436 | 0.279 | 1e-35 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.683 | 0.464 | 0.273 | 5e-35 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.725 | 0.750 | 0.258 | 9e-35 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.670 | 0.659 | 0.248 | 1e-34 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.670 | 0.747 | 0.248 | 1e-34 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.637 | 0.630 | 0.259 | 2e-34 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.688 | 0.574 | 0.258 | 2e-34 | |
| Q9FMD3 | 504 | Pentatricopeptide repeat- | no | no | 0.589 | 0.728 | 0.272 | 5e-34 |
| >sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein At4g34830, chloroplastic OS=Arabidopsis thaliana GN=At4g34830/At4g34820 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/602 (69%), Positives = 506/602 (84%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 AG 607
AG
Sbjct: 981 AG 982
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 209/449 (46%), Gaps = 14/449 (3%)
Query: 28 QLHSYNRLIR----QGRISECIDLLEDM--ERKGLLDMDKVYHAR----FFNVCKSQKAI 77
+ SYN L++ + R E ++LL M +R G D V + FF S KA
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216
Query: 78 KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
P + T+N +++ ++ + A +VL + + G+ DC Y +++
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276
Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
SG+ +M + G+EP+V TY L+D K G+ +A + M + +KP+
Sbjct: 277 CSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEI 336
Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
+ L+ GA+ +L M + + PDH L+ A A G+VD+A V+
Sbjct: 337 TTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPDHYVFSILICAYAKQGKVDQAMLVF 394
Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
+ + + Y I ++G E A ++ M +G+ P + ++LI
Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 454
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
K E A E++ E ++GI + I ++S++ + ++ +L+E M I +KP V T
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITY 514
Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
N LI C ++ + M++LS M S+GL PNT+TYS L+ + +E L+L + +
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Query: 438 DGVIPNLVMFKCIIG--MCSRRYEKARTL 464
GV P+++ + I+ +RR A+ L
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKEL 603
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 202/411 (49%), Gaps = 12/411 (2%)
Query: 47 LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SV 101
+ +M KG + Y +C +++ I EA F + + PT+ T+ +L+ S+
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
C S + SE A +++ ++E G+K + YT LI + K + E+ +M+ G+ PN
Sbjct: 334 CGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392
Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
V TY ALI+G K G + A +M S+ + P+ +N LI +S V +A VL
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLN 451
Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
+M V PD +T +L+ +G D A + +++ + YT I+ +
Sbjct: 452 KMLE--RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509
Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
+ E AC ++D + +KGV P+ V +ALID AGKV+ A +L++ ++ ++
Sbjct: 510 SKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLT 569
Query: 342 YSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
+++L+ G C++ K ++A L E M I L+PTVST LI L M
Sbjct: 570 FNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628
Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
S G P+ TY+ + R+ + ++++ +E+GV P+L + +I
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 207/461 (44%), Gaps = 35/461 (7%)
Query: 16 GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
G + N + S + +Y R G E I + M+ GL Y+A K
Sbjct: 262 GGYGNTVYAFSALISAYGR---SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGM 318
Query: 76 AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
K+ +FF + P TFN L++VC+ E A + + ++ D Y
Sbjct: 319 EFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378
Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
TL+ K G++D FE+ +M I PNV +Y +IDG AKAG+ +A +G MR
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
+ DRV +N L++ + G + A D+L EM A V + D +T AL+ G+ D
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASVG-IKKDVVTYNALLGGYGKQGKYD 496
Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
++V+ + + ++ Y+ I+ S+ G ++ A ++ + G+ D V SALI
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556
Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-------------- 357
D G V +A ++ E +GIS +++Y+S++ A + +
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSS 616
Query: 358 ----ALELYEHMKSIKLKPTVST-MNALITALCDG--DQLPKTMEVLSDMKSLGLCPNTI 410
AL E + I+L ++T N T C+ +L +EV M L + PN +
Sbjct: 617 SALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVV 676
Query: 411 TYSILLVACERKDDVEVGLMLLSQ-----AKEDGVIPNLVM 446
T+S +L AC R + E MLL + K GV+ L+M
Sbjct: 677 TFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM 717
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 121/468 (25%), Positives = 221/468 (47%), Gaps = 16/468 (3%)
Query: 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
++ L ++R R G E + LLE M RKG + D + + + + I +A R +
Sbjct: 90 TQMLKIFHRSCRSGNYIESLHLLETMVRKG-YNPDVILCTKLIKGFFTLRNIPKAVRVME 148
Query: 86 LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
++ P + +N L++ + A +VL ++ D Y +I + GK
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208
Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
+D +V +++++ +P V TY LI+ G V +A M S+ +KPD +N
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268
Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
+I + G VDRAF+++ N E+ +PD I+ L++A N G+ + ++ M
Sbjct: 269 IIRGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTKM 324
Query: 263 YNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
++ K P V Y+I I + G E A ++ M +KG+ PD LI G++
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384
Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
+ A E L+ + G I++Y++++ C N K Q ALE++ + + P S+ N
Sbjct: 385 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYNT 443
Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
+ +AL + + ++ +M S G+ P+ ITY+ ++ R+ V+ LL +
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503
Query: 440 VIPNLVMFKCI-IGMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
P++V + + +G C + R E A + E ++ N RP E +T L
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRPN-ETTYTVL 549
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 204/427 (47%), Gaps = 9/427 (2%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 228
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ A +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
A + +M +DPD T +L+ ++D+A+++++ + + Y
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
I ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G+
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466
Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 467 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
++ + G+ PN +TY+ ++ K ++ LL + KEDG +PN + +I
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 585
Query: 455 SRRYEKA 461
R +KA
Sbjct: 586 LRDGDKA 592
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 205/427 (48%), Gaps = 9/427 (2%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 95 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 153
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D + AF +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 154 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 214 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
A + +M +DPD T +L+ ++D+A+++++ + + + Y
Sbjct: 274 AEKLHDDMIKR--SIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331
Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
I ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G+
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391
Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 392 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
++ + G+ PN +TY+ ++ K ++ LL + KEDG +P+ + +I
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510
Query: 455 SRRYEKA 461
R +KA
Sbjct: 511 LRDGDKA 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 201/412 (48%), Gaps = 15/412 (3%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M G + + + H F + K+ +A+ R P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTY 224
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ AF +L +++ L+ +Y T+I K +D +F EM
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M + + PD F+ALI A + G +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEV--Y 272
A + EM +DP +T +L+ ++D A+++++ M+ K+ P+V Y
Sbjct: 345 AEKLYDEMVK--RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF---PDVVTY 399
Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
I + E V+ +M+++G++ + V + LI AG + A EI +E +
Sbjct: 400 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 459
Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
G+ I++Y++L+ G C N K +KA+ ++E+++ K++PT+ T N +I +C ++
Sbjct: 460 DGVPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518
Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
++ ++ G+ P+ + Y+ ++ RK E L + KEDG +PN
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/441 (25%), Positives = 205/441 (46%), Gaps = 12/441 (2%)
Query: 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
SY+RL I + + ++ + G + Y+A +S++ I A FK +
Sbjct: 143 SYSRL---SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 88 -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
+P + T+N+L+ + + + A + ++ G + Y TLI K K+D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
F++ M G+EPN+ +Y +I+G + G++ + M + D V +N LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G +A + AEM H + P IT +L+ + AG ++RA E + +
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
YT ++ SQ G A V +M G P V +ALI+ GK+E A +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437
Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
L++ K +G+S ++SYS+++ + + +AL + M +KP T ++LI C+
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497
Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
+ + ++ +M +GL P+ TY+ L+ A + D+E L L ++ E GV+P++V
Sbjct: 498 QRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVT 557
Query: 447 FKCIIGMC---SRRYEKARTL 464
+ +I SR E R L
Sbjct: 558 YSVLINGLNKQSRTREAKRLL 578
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 178/375 (47%), Gaps = 8/375 (2%)
Query: 73 SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
SQ ++ +F + KL P++ TF L++ C + + + ++V G K + +
Sbjct: 130 SQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG-MGYKPNVVI 188
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
Y T+I KS +VD ++ + M GI P+V TY +LI G +G+ + A M
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMT 248
Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
+ + PD FNALI AC + G V A + EM +DPD +T L+ +
Sbjct: 249 KREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIR--RSLDPDIVTYSLLIYGLCMYSR 306
Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
+D A E++ + Y+I IN ++ E ++ +M+++GV+ + V +
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTI 366
Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 368
LI AGK+ A EI + G+ II+Y+ L+ G C N K +KAL + M+
Sbjct: 367 LIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGK-IEKALVILADMQKN 425
Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
+ + T N +I +C ++ ++ + GL P+ TY+ +++ +K
Sbjct: 426 GMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREA 485
Query: 429 LMLLSQAKEDGVIPN 443
L + KEDG++PN
Sbjct: 486 DALFRKMKEDGILPN 500
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 623 | ||||||
| 255586885 | 1129 | pentatricopeptide repeat-containing prot | 0.974 | 0.537 | 0.772 | 0.0 | |
| 359474892 | 1115 | PREDICTED: pentatricopeptide repeat-cont | 0.966 | 0.539 | 0.765 | 0.0 | |
| 297744686 | 1550 | unnamed protein product [Vitis vinifera] | 0.966 | 0.388 | 0.765 | 0.0 | |
| 224080562 | 665 | predicted protein [Populus trichocarpa] | 0.894 | 0.837 | 0.784 | 0.0 | |
| 356529805 | 1092 | PREDICTED: pentatricopeptide repeat-cont | 0.911 | 0.520 | 0.739 | 0.0 | |
| 449458656 | 1108 | PREDICTED: pentatricopeptide repeat-cont | 0.969 | 0.545 | 0.706 | 0.0 | |
| 110741791 | 1089 | hypothetical protein [Arabidopsis thalia | 0.966 | 0.552 | 0.699 | 0.0 | |
| 110740372 | 1089 | hypothetical protein [Arabidopsis thalia | 0.966 | 0.552 | 0.699 | 0.0 | |
| 145353124 | 1089 | pentatricopeptide repeat-containing prot | 0.966 | 0.552 | 0.699 | 0.0 | |
| 357473771 | 1173 | Pentatricopeptide repeat-containing prot | 0.911 | 0.484 | 0.732 | 0.0 |
| >gi|255586885|ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223525928|gb|EEF28334.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/607 (77%), Positives = 537/607 (88%)
Query: 1 MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
+QD N+ +FPYPNG H+ +EQ+H YNRL+R GR++EC+DLLEDMER+GLLDM
Sbjct: 415 IQDEHTNLPEFPYPNGVHSTNKDHKAEQVHGYNRLLRDGRLAECVDLLEDMERRGLLDMS 474
Query: 61 KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
K+YHA+FF +CK QKA+KEAFRF KLVPNP+LSTFNMLMSVC+SS+DS+GAF+VLRL Q
Sbjct: 475 KIYHAKFFKICKIQKAVKEAFRFCKLVPNPSLSTFNMLMSVCSSSQDSDGAFEVLRLAQG 534
Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
AGLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYG+LIDGCAKAGQ+AK
Sbjct: 535 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAK 594
Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
AFGAYGI+RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GAL
Sbjct: 595 AFGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAETHPIDPDHITVGAL 654
Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
MKACA AGQVDRA+EVY M+HKYNIKGTPEVYTIA+N CSQTGDWEFA SVYDDMT+KGV
Sbjct: 655 MKACAKAGQVDRAKEVYNMLHKYNIKGTPEVYTIAVNFCSQTGDWEFARSVYDDMTRKGV 714
Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
PDE+FLSAL+D AGHAG V+ AFE LQEA+ QG +GI+ YSSLMGACSNAKNWQKALE
Sbjct: 715 APDEMFLSALVDVAGHAGLVDIAFETLQEARTQGTQLGIVPYSSLMGACSNAKNWQKALE 774
Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
LYE +K+IKLKPTVSTMNAL+TALCDGDQL K +E LS+MKS GLCPN +TYSILLVA E
Sbjct: 775 LYEDIKAIKLKPTVSTMNALMTALCDGDQLQKALETLSEMKSFGLCPNIVTYSILLVASE 834
Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN 480
RKDD++ G MLLSQAKED + P +M+KCIIGMC RRY+KA +L E +LSF+SGRPQI+N
Sbjct: 835 RKDDLDAGDMLLSQAKEDCITPTFLMYKCIIGMCLRRYKKACSLGESILSFDSGRPQIKN 894
Query: 481 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 540
+WTS AL VYRE I AG PT+EVVS+VLGCLQLP +A ++ RLVENLGV+AD K SNL
Sbjct: 895 EWTSRALTVYRETIAAGEKPTMEVVSQVLGCLQLPCDASLKGRLVENLGVTADPSKFSNL 954
Query: 541 CSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGL 600
C+L+DGFGEYDPRAFSLLEEAAS G VPC SFKE P+V+DA+ L+ H A+VYLLTILKGL
Sbjct: 955 CALVDGFGEYDPRAFSLLEEAASLGTVPCASFKESPIVMDAKLLQSHIAEVYLLTILKGL 1014
Query: 601 RHRLAAG 607
+HRLAAG
Sbjct: 1015 KHRLAAG 1021
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/602 (76%), Positives = 532/602 (88%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 406 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 465
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 466 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 525
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 526 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 585
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 586 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 645
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 646 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 705
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 706 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 765
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 766 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 825
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKWTS
Sbjct: 826 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 885
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE + AG IPT+E++S+VLGCLQ P + +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 886 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 945
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I A+VYLLT+LKGL+HRLA
Sbjct: 946 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYLLTVLKGLKHRLA 1005
Query: 606 AG 607
AG
Sbjct: 1006 AG 1007
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/602 (76%), Positives = 532/602 (88%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 841 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 900
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 901 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 960
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 961 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 1020
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 1021 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 1080
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 1081 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 1140
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 1141 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 1200
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 1201 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 1260
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKWTS
Sbjct: 1261 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 1320
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE + AG IPT+E++S+VLGCLQ P + +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 1321 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 1380
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I A+VYLLT+LKGL+HRLA
Sbjct: 1381 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYLLTVLKGLKHRLA 1440
Query: 606 AG 607
AG
Sbjct: 1441 AG 1442
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa] gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2414), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/557 (78%), Positives = 499/557 (89%)
Query: 51 MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110
MER+GLLDM+KVYH +FF +C+SQKA+KEAFRF KLV NPTLSTFNMLMSVCA+S++S G
Sbjct: 1 MERRGLLDMNKVYHVKFFKLCRSQKAVKEAFRFCKLVQNPTLSTFNMLMSVCATSQNSAG 60
Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
AF+VL+L + GLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYGALID
Sbjct: 61 AFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGALID 120
Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
GCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM E P+
Sbjct: 121 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPI 180
Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
DPDHIT+GAL+KAC NAGQVDRA+EVY M+HKYNIKGTPEVYTIAIN CSQ GDWEFAC
Sbjct: 181 DPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIGDWEFACK 240
Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
V+DDMT+KGV+PDE+FLSALID AGHAGK++AAFEI+QEAK +G +GII YSSLMGAC
Sbjct: 241 VFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACC 300
Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
NAKNWQK LELYE +KS+K+KPTV+TMNALITALCDGDQLPK +EVLS+MK+ GL PNTI
Sbjct: 301 NAKNWQKGLELYEDIKSMKIKPTVATMNALITALCDGDQLPKALEVLSEMKAWGLRPNTI 360
Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
TYSIL VA ERKDD+E GLMLLSQAK+D V P L+M KCII MC R++E A TL E VLS
Sbjct: 361 TYSILSVASERKDDLEAGLMLLSQAKKDCVAPTLIMSKCIISMCLRKFESACTLGEAVLS 420
Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 530
FNSGR QIENKWTS+ALMVYR + AG PT+E+VS+VLGCLQ+P +A ++ RLVENLGV
Sbjct: 421 FNSGRAQIENKWTSVALMVYRGTMAAGEKPTIELVSQVLGCLQIPCDATLKNRLVENLGV 480
Query: 531 SADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
+A + + SNLCSL+DGFGEYDPRAFSLLEEAA+ GIVPCVSFKE P+ +DA++L+IH A+
Sbjct: 481 TAVSSRYSNLCSLVDGFGEYDPRAFSLLEEAAALGIVPCVSFKESPITMDAKQLQIHIAE 540
Query: 591 VYLLTILKGLRHRLAAG 607
VY LTILKGL+HRLAAG
Sbjct: 541 VYFLTILKGLKHRLAAG 557
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529805|ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/568 (73%), Positives = 502/568 (88%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 408 RLHECVELLKDMETKGLLDMTKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 467
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFEVFH+MVN+G+E
Sbjct: 468 SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 527
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
PNVHTYGALIDGCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALI AC QSGA+DRAFDV
Sbjct: 528 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGALDRAFDV 587
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
LAEM AE P+DPDH+TIGAL+KAC AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 588 LAEMTAETQPIDPDHVTIGALLKACTKAGQVERAKEVYKMVQKYNIKGCPEVYTIAINSC 647
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
SQTGDWEFA +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA+ GI +GI
Sbjct: 648 SQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEARKGGILIGI 707
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
+SYSSLMGACSNA+NWQKALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVL +
Sbjct: 708 MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 767
Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
MK LGL PN+IT+SIL+VA E+KDD+E MLLS AK+DGV+PNL+M +CIIGMC RR+E
Sbjct: 768 MKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSLAKKDGVVPNLIMCRCIIGMCQRRFE 827
Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
KA + E VLSF+SGRPQ++NKWTSLALMVYRE I AG PT E++S++LGCLQLPY+
Sbjct: 828 KACFVGEPVLSFDSGRPQVDNKWTSLALMVYRETIEAGEKPTSEILSQILGCLQLPYDTS 887
Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
++ RLVENLGVS + + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VS K PVV+
Sbjct: 888 VKNRLVENLGVSMETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSLKVSPVVI 947
Query: 580 DARKLEIHTAKVYLLTILKGLRHRLAAG 607
DA++L TA+VYL+T+LKGL+HRLAAG
Sbjct: 948 DAKELNASTAEVYLITVLKGLKHRLAAG 975
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458656|ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/604 (70%), Positives = 523/604 (86%)
Query: 5 GKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
GK + P+PNGKH +Y + +Q SYN+ ++ GR+ +CI +L+DME++G+LDM+K+YH
Sbjct: 398 GKVVNGLPHPNGKHVHYKNLDVDQYKSYNQCLKGGRLHDCIRILQDMEKEGILDMNKIYH 457
Query: 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
+FFN+CKS+KA++EAF++ L+ NPTLSTFNMLMSVCASS+DSE AFQV+RLVQEAG+K
Sbjct: 458 GKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMK 517
Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
ADCKLYTTLI+TC KSGKVDAMFEVFH MVNAG+EPNVHTYGALIDGCA+A QVAKAFG
Sbjct: 518 ADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGV 577
Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE+HP++PDHITIGALMKAC
Sbjct: 578 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKAC 637
Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
ANAGQVDRAREVYKMIH Y IKGTPEVYTIA+NCCSQ+ DW+FA ++Y DMT+KGV PDE
Sbjct: 638 ANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDE 697
Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
+FLSALID AGHAGK++AAFE+L EAK GI VGI+SYSSLMGACSNAKNWQKAL LYE
Sbjct: 698 IFLSALIDVAGHAGKLDAAFEVLGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYED 757
Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
+KS+KL+ TVST+NALITAL DG+QL M++L++MK LGL PN ITYSIL A +R +D
Sbjct: 758 LKSMKLRLTVSTVNALITALSDGEQLQMAMDILTEMKELGLSPNNITYSILTAASDRNND 817
Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 484
+E+ LMLLSQAKEDG++P L M++CIIGMC RR +L+ ++S +S PQ+++KWT+
Sbjct: 818 LEIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRIADPSSLDRPLMSLDSTLPQVDSKWTA 877
Query: 485 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 544
AL VYRE I AG +P+++V+S+VLGCLQ+P++ ++ RL+EN+GVSAD+ + S+LCSLI
Sbjct: 878 QALKVYREIIEAGIVPSIDVLSQVLGCLQIPHDPALKSRLIENIGVSADSSRSSSLCSLI 937
Query: 545 DGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRL 604
DGFGEYDPRAFSL EEAAS G+ P VS K P+VVDA++L+IHTA+VYLLT+LKGL+HRL
Sbjct: 938 DGFGEYDPRAFSLFEEAASLGVAPFVSLKGNPIVVDAKELQIHTAEVYLLTVLKGLKHRL 997
Query: 605 AAGN 608
AAG+
Sbjct: 998 AAGS 1001
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110741791|dbj|BAE98839.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/602 (69%), Positives = 506/602 (84%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 AG 607
AG
Sbjct: 981 AG 982
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110740372|dbj|BAF02081.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/602 (69%), Positives = 506/602 (84%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 AG 607
AG
Sbjct: 981 AG 982
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145353124|ref|NP_195209.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635623|sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g34830, chloroplastic; Flags: Precursor gi|332661026|gb|AEE86426.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/602 (69%), Positives = 506/602 (84%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 AG 607
AG
Sbjct: 981 AG 982
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357473771|ref|XP_003607170.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355508225|gb|AES89367.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/568 (73%), Positives = 499/568 (87%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK QKA+ EAF + +L+PNPTLSTFNMLM
Sbjct: 498 RLCECVELLKDMEMKGLLDMTKVYHAKFFNICKKQKAVNEAFDYVRLIPNPTLSTFNMLM 557
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
SVCASS+DSEGAFQV++L+++A L DCKLYTTLI+TC K GKVD MFEVFH+MVN+G+E
Sbjct: 558 SVCASSQDSEGAFQVIQLLKDARLDPDCKLYTTLISTCGKCGKVDLMFEVFHKMVNSGVE 617
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
PNVHTYGALIDGCA+AGQVAKAFGAYGIMRSKNVK DRVVFNALI AC QSGA+ RAFDV
Sbjct: 618 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQSGAMARAFDV 677
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
+AEM AE+ P+ PDH+T G LMKACA AGQV+RAREVYKMI +YNIKG+ EVYTIAIN C
Sbjct: 678 IAEMEAEIQPIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSC 737
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
SQTGDWEFA SVYDDMT+KGV+PDE+F+SALID AGHA K+EAAF+ILQ+A+ +G+ +GI
Sbjct: 738 SQTGDWEFARSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEGVQIGI 797
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
++YSSLMGACS AKNWQ+ALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVLS+
Sbjct: 798 MTYSSLMGACSKAKNWQRALELYEYLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSE 857
Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
MK LGLCPN+IT+SIL+VA E+KDD+E MLLSQAK+DG P L+M +CIIGMC RR+E
Sbjct: 858 MKGLGLCPNSITFSILIVASEKKDDMEAAQMLLSQAKKDGAAPTLIMCRCIIGMCLRRFE 917
Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
KA + E VLSF+SGRPQ+ N+WTSLALMVYRE I AG PT +++S+VLGCL+ PY+
Sbjct: 918 KACLVGETVLSFDSGRPQVNNEWTSLALMVYRETIGAGEKPTSQILSQVLGCLKFPYDTY 977
Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
+R RLVENLGV+A++ K SNLCSLIDGFGEYDPRAFS+LEEAAS+G+VP VS K P+V+
Sbjct: 978 VRNRLVENLGVTAESSKTSNLCSLIDGFGEYDPRAFSILEEAASYGVVPSVSLKMNPIVI 1037
Query: 580 DARKLEIHTAKVYLLTILKGLRHRLAAG 607
DA++L+ TA+VYLLTILKGL+HRLAAG
Sbjct: 1038 DAKELDAFTAEVYLLTILKGLKHRLAAG 1065
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 623 | ||||||
| TAIR|locus:2116915 | 1089 | MRL1 "MATURATION OF RBCL 1" [A | 0.966 | 0.552 | 0.699 | 1.1e-231 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.757 | 0.784 | 0.261 | 1.3e-36 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.643 | 0.438 | 0.294 | 7.3e-35 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.653 | 0.772 | 0.278 | 8.2e-35 | |
| TAIR|locus:2174165 | 504 | AT5G16640 [Arabidopsis thalian | 0.587 | 0.726 | 0.280 | 1.3e-34 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.669 | 0.657 | 0.252 | 7.7e-34 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.653 | 0.646 | 0.253 | 1.3e-33 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.685 | 0.571 | 0.264 | 6.1e-33 | |
| TAIR|locus:2053552 | 627 | AT2G15630 "AT2G15630" [Arabido | 0.731 | 0.727 | 0.244 | 8.4e-33 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.651 | 0.637 | 0.251 | 1.2e-32 |
| TAIR|locus:2116915 MRL1 "MATURATION OF RBCL 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2235 (791.8 bits), Expect = 1.1e-231, P = 1.1e-231
Identities = 421/602 (69%), Positives = 506/602 (84%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 AG 607
AG
Sbjct: 981 AG 982
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 130/498 (26%), Positives = 238/498 (47%)
Query: 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAF 81
++ L ++R R G E + LLE M RKG + D + + FF + KA++
Sbjct: 90 TQMLKIFHRSCRSGNYIESLHLLETMVRKGY-NPDVILCTKLIKGFFTLRNIPKAVR-VM 147
Query: 82 RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
+ P + +N L++ + A +VL ++ D Y +I + G
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207
Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
K+D +V +++++ +P V TY LI+ G V +A M S+ +KPD +N
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYN 267
Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
+I + G VDRAF+++ N E+ +PD I+ L++A N G+ + ++ M
Sbjct: 268 TIIRGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTK 323
Query: 262 KYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
++ K P V Y+I I + G E A ++ M +KG+ PD LI G+
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383
Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
++ A E L+ + G I++Y++++ C N K Q ALE++ + + P S+ N
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYN 442
Query: 379 ALITAL-CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
+ +AL GD++ + + ++ +M S G+ P+ ITY+ ++ R+ V+ LL +
Sbjct: 443 TMFSALWSSGDKI-RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRS 501
Query: 438 DGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV----YR 491
P++V + ++ G C + R E A + E ++ N RP E +T L + YR
Sbjct: 502 CEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRPN-ETTYTVLIEGIGFAGYR 559
Query: 492 -EAI-VAGTIPTVEVVSK 507
EA+ +A + ++ +S+
Sbjct: 560 AEAMELANDLVRIDAISE 577
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 7.3e-35, P = 7.3e-35
Identities = 124/421 (29%), Positives = 212/421 (50%)
Query: 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLSTFN 96
+ + +M KG + Y +C +++ I EA F K+ + PT+ T+
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYT 327
Query: 97 MLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
+L+ S+C S + SE A +++ ++E G+K + YT LI + K + E+ +M+
Sbjct: 328 VLIKSLCGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE 386
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
G+ PNV TY ALI+G K G + A +M S+ + P+ +N LI +S V +
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHK 445
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VY 272
A VL +M E V PD +T +L+ +G D A Y+++ N +G P+ Y
Sbjct: 446 AMGVLNKM-LE-RKVLPDVVTYNSLIDGQCRSGNFDSA---YRLLSLMNDRGLVPDQWTY 500
Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
T I+ ++ E AC ++D + +KGV P+ V +ALID AGKV+ A +L++ +
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560
Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-DGDQL 390
+ +++++L+ G C++ K ++A L E M I L+PTVST LI L DGD
Sbjct: 561 KNCLPNSLTFNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD-F 618
Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
M S G P+ TY+ + R+ + ++++ +E+GV P+L + +
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678
Query: 451 I 451
I
Sbjct: 679 I 679
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 8.2e-35, P = 8.2e-35
Identities = 121/435 (27%), Positives = 208/435 (47%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAF--RFFKLV 87
N + + + I+L + ++ G+ +Y C SQ + +F + KL
Sbjct: 80 NVIAKMKKFDVVINLCDHLQIMGV--SHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLG 137
Query: 88 PNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
P + TF L++ C ++ E V ++V E G+K D +YTT+I + K+G V+
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV-EMGIKPDVVMYTTIIDSLCKNGHVNYA 196
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
+F +M N GI P+V Y +L++G +G+ A M + +KPD + FNALI A
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDA 256
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G A ++ EM + P+ T +L+ G VD AR+++ ++ K
Sbjct: 257 FVKEGKFLDAEELYNEMIRM--SIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET---K 311
Query: 267 GT-PEV--YTIAIN--C-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
G P+V YT IN C C + D A ++ +M++KG+ + + + LI G GK
Sbjct: 312 GCFPDVVAYTSLINGFCKCKKVDD---AMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKP 368
Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLK---PTVST 376
A E+ ++G+ I +Y+ L+ C N K +KAL ++E M+ ++ P + T
Sbjct: 369 NVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKV-KKALMIFEDMQKREMDGVAPNIWT 427
Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
N L+ LC +L K + V DM+ + ITY+I++ + V+ + L
Sbjct: 428 YNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLP 487
Query: 437 EDGVIPNLVMFKCII 451
GV PN+V + +I
Sbjct: 488 SKGVKPNVVTYTTMI 502
|
|
| TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 107/381 (28%), Positives = 185/381 (48%)
Query: 71 CK-SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKAD 126
C+ SQ ++ +F + KL P++ TF L++ C + + + ++V G K +
Sbjct: 127 CRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG-MGYKPN 185
Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
+Y T+I KS +VD ++ + M GI P+V TY +LI G +G+ + A
Sbjct: 186 VVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVS 245
Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
M + + PD FNALI AC + G V A + EM +DPD +T L+
Sbjct: 246 CMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRR--SLDPDIVTYSLLIYGLCM 303
Query: 247 AGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
++D A E++ + KG P+V Y+I IN ++ E ++ +M+++GV+ +
Sbjct: 304 YSRLDEAEEMFGFMVS---KGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360
Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 362
V + LI AGK+ A EI + G+ II+Y+ L+ G C N K +KAL +
Sbjct: 361 TVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKI-EKALVIL 419
Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
M+ + + T N +I +C ++ ++ + GL P+ TY+ +++ +K
Sbjct: 420 ADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKK 479
Query: 423 DDVEVGLMLLSQAKEDGVIPN 443
L + KEDG++PN
Sbjct: 480 GLRREADALFRKMKEDGILPN 500
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 7.7e-34, P = 7.7e-34
Identities = 108/428 (25%), Positives = 206/428 (48%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN-KASEAVALVDRMVQRGCQPNLVTY 228
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ A +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
A + +M +DPD T +L+ ++D+A+++++ M+ K T+
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
C ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G
Sbjct: 407 IKGFC-KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465
Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
+ I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 466 VPPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 524
Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
++ + G+ PN +TY+ ++ K ++ LL + KEDG +PN + +I
Sbjct: 525 WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRA 584
Query: 454 CSRRYEKA 461
R +KA
Sbjct: 585 HLRDGDKA 592
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 1.3e-33, P = 1.3e-33
Identities = 106/418 (25%), Positives = 201/418 (48%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M G + + + H F + K+ +A+ R P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHN-KASEAMALIDRMVAKGCQPDLVTY 224
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ AF +L +++ L+ +Y T+I K +D +F EM
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M + + PD F+ALI A + G +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
A + EM +DP +T +L+ ++D A+++++ M+ K+ T+
Sbjct: 345 AEKLYDEMVKR--SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
C E V+ +M+++G++ + V + LI AG + A EI +E + G
Sbjct: 403 IKGFCKYKRVEE-GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
+ I++Y++L+ G C N K +KA+ ++E+++ K++PT+ T N +I +C ++
Sbjct: 462 VPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520
Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
++ ++ G+ P+ + Y+ ++ RK E L + KEDG +PN + +I
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 6.1e-33, P = 6.1e-33
Identities = 117/443 (26%), Positives = 209/443 (47%)
Query: 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
SY+RL I + + ++ + G + Y+A +S++ I A FK +
Sbjct: 143 SYSRL---SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 88 -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
+P + T+N+L+ + + + A + ++ G + Y TLI K K+D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
F++ M G+EPN+ +Y +I+G + G++ + M + D V +N LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G +A + AEM H + P IT +L+ + AG ++RA E + +
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAF 324
YT ++ SQ G A V +M G P V +ALI+ GH GK+E A
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN--GHCVTGKMEDAI 435
Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
+L++ K +G+S ++SYS+++ + + +AL + M +KP T ++LI
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
C+ + + ++ +M +GL P+ TY+ L+ A + D+E L L ++ E GV+P++
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 445 VMFKCII-GMC--SRRYEKARTL 464
V + +I G+ SR E R L
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLL 578
|
|
| TAIR|locus:2053552 AT2G15630 "AT2G15630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 8.4e-33, P = 8.4e-33
Identities = 117/479 (24%), Positives = 224/479 (46%)
Query: 91 TLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
T ST F++L+ C + + A + L++E G + ++T ++ +++ +
Sbjct: 152 TKSTILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWV 211
Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
+ +M I+ NV+T+ +I+ K G++ KA G GIM +KP V +N L+
Sbjct: 212 FYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFS 271
Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
G ++ A +++EM ++ PD T ++ N G RA EV + + + +
Sbjct: 272 LRGRIEGARLIISEMKSK--GFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPD 326
Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
Y I I CS GD E A + D+M K+G++P + LI K+EAA +++
Sbjct: 327 SVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIR 386
Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
E + +GI + ++Y+ L+ G C + + +KA L++ M + ++PT T +LI LC
Sbjct: 387 EIREKGIVLDSVTYNILINGYCQHG-DAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRK 445
Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
++ + E+ + G+ P+ + + L+ +++ LL + + P+ V +
Sbjct: 446 NKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTY 505
Query: 448 KCII-GMCSR-RYEKARTLN----------EHVLSFNSGRPQIENKW-TSLALMVYREAI 494
C++ G+C ++E+AR L +H+ S+N+ K T A MV E +
Sbjct: 506 NCLMRGLCGEGKFEEARELMGEMKRRGIKPDHI-SYNTLISGYSKKGDTKHAFMVRDEML 564
Query: 495 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR 553
G PT+ + +L L ++ E L+ + S+ CS+I+ D +
Sbjct: 565 SLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDAK 623
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 1.2e-32, P = 1.2e-32
Identities = 105/417 (25%), Positives = 196/417 (47%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP--- 88
N L +GR+SE ++L++ M G D + N +C S K + K+V
Sbjct: 166 NGLCLEGRVSEALELVDRMVEMGHKP-DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGC 224
Query: 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
P T+ +++V S + A ++LR ++E +K D Y+ +I K G +D F
Sbjct: 225 QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFN 284
Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
+F+EM GI N+ TY LI G AG+ M + + P+ V F+ LI +
Sbjct: 285 LFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFV 344
Query: 209 QSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
+ G + A ++ EM +H + PD IT +L+ +D+A ++ ++
Sbjct: 345 KEGKLREAEELHKEM---IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 401
Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
+ I IN + + ++ M+ +GV+ D V + LI GK+ A E+
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461
Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
QE ++ + I++Y L+ G C N ++ +KALE++E ++ K++ + N +I +C+
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGES-EKALEIFEKIEKSKMELDIGIYNIIIHGMCN 520
Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
++ ++ + G+ P TY+I++ +K + +L + +EDG P+
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 623 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.0 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 1148 bits (2972), Expect = 0.0
Identities = 458/584 (78%), Positives = 527/584 (90%)
Query: 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
E + +YNRL+R GRI +CIDLLEDME++GLLDMDK+YHA+FF CK Q+A+KEAFRF
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF 428
Query: 84 FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
KL+ NPTLSTFNMLMSVCASS+D +GA +VLRLVQEAGLKADCKLYTTLI+TCAKSGKV
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
DAMFEVFHEMVNAG+E NVHT+GALIDGCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNAL
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
I+ACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GALMKACANAGQVDRA+EVY+MIH+Y
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
NIKGTPEVYTIA+N CSQ GDW+FA S+YDDM KKGV PDEVF SAL+D AGHAG ++ A
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
FEILQ+A+ QGI +G +SYSSLMGACSNAKNW+KALELYE +KSIKL+PTVSTMNALITA
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
LC+G+QLPK +EVLS+MK LGLCPNTITYSILLVA ERKDD +VGL LLSQAKEDG+ PN
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 503
LVM +CI G+C RR+EKA L E V+SF+SGRPQIENKWTS ALMVYRE I AGT+PT+E
Sbjct: 789 LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME 848
Query: 504 VVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 563
V+S+VLGCLQLP++A +R RL+ENLG+SAD+ K+SNL +L+DGFGEYDPRAFSLLEEAAS
Sbjct: 849 VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAAS 908
Query: 564 FGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAG 607
G+VP VSFK+ P+V+DA +L + A+VYLLTILKGL+HRLAAG
Sbjct: 909 LGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAAG 952
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 9e-16
Identities = 87/388 (22%), Positives = 147/388 (37%), Gaps = 39/388 (10%)
Query: 81 FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
F +L +P L T ++S C D ++ V + G D + +LI
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
G +VF M + ++ A+I G K G KA Y +M NV PD +
Sbjct: 337 GSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 201 NALITACGQSGAVDRAFDV--LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
++++AC G +D + LAE + V + AL++ + +D+A EV+
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYV----VVANALIEMYSKCKCIDKALEVFH 448
Query: 259 MIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
I + + I T + + +N F ++ + P+ V L A +
Sbjct: 449 NIPEKDVISWTSIIAGLRLNNRC------FEALIFFRQMLLTLKPNSVTLIAALSACARI 502
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL------- 370
G + EI GI G NA L+LY +
Sbjct: 503 GALMCGKEIHAHVLRTGI--------GFDGFLPNA-----LLDLYVRCGRMNYAWNQFNS 549
Query: 371 -KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
+ V + N L+T + +E+ + M G+ P+ +T+ LL AC R V GL
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 430 MLLSQAKED-GVIPNLVMFKCIIGMCSR 456
+E + PNL + C++ + R
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGR 637
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 3e-15
Identities = 96/464 (20%), Positives = 181/464 (39%), Gaps = 79/464 (17%)
Query: 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
HD + QL + L G++ + + LLE M+ + + Y A F +C+ ++A++E R
Sbjct: 52 HDSNSQLRA---LCSHGQLEQALKLLESMQELRVPVDEDAYVA-LFRLCEWKRAVEEGSR 107
Query: 83 FFKLVPNPTLSTF-----NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
+ + N ++S+ + A+ V + E L + + L+
Sbjct: 108 VCSRA-LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS----WNVLVGGY 162
Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
AK+G D ++H M+ AG+ P+V+T+ ++ C +A+ + + + D
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222
Query: 198 VVFNALIT---ACGQSGAVDRAFDVLAEM--------------NAEVHP----------- 229
V NALIT CG + FD + N E
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282
Query: 230 -VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW--- 285
VDPD +TI +++ AC G RE++ + K V I G W
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 286 ----------------------------EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
+ A Y M + V PDE+ +++++
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
G ++ ++ + A+ +G+ ++ ++L+ S K KALE++ ++ + V +
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISW 458
Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
++I L ++ + + M L L PN++T L AC R
Sbjct: 459 TSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACAR 501
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 1e-13
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
Y TLI K GKV+ ++F+EM GI+PNV+TY LIDG K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-12
Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 18/213 (8%)
Query: 55 GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114
L+DM ++ C I++A F +P T +N +++ A SE A +
Sbjct: 264 ALIDM--------YSKCGD---IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
++++G+ D ++ +I ++ ++ + ++ G ++ AL+D +K
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
G++ A + M KN+ + +NALI G G +A ++ M AE V P+H
Sbjct: 373 WGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNH 426
Query: 235 ITIGALMKACANAGQVDRAREVYK-MIHKYNIK 266
+T A++ AC +G ++ E+++ M + IK
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 1e-11
Identities = 88/393 (22%), Positives = 156/393 (39%), Gaps = 25/393 (6%)
Query: 71 CKSQKAIKEAFRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
C + E F + TL ST++ L+ C + K V V+ +G + D
Sbjct: 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159
Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
+ ++ K G + +F EM E N+ ++G +I G AG +AF + M
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREM 215
Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
+ F ++ A G+ RA L + V D AL+ + G
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSA-RAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCG 273
Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCC----SQTGDWEFACSVYDDMTKKGVIPDE 304
++ AR V+ G PE T+A N + G E A +Y +M GV D+
Sbjct: 274 DIEDARCVF--------DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
S +I +E A + G + I++ ++L+ S + A +++
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
M + + + NALI + + K +E+ M + G+ PN +T+ +L AC
Sbjct: 386 MP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 425 VEVGL-MLLSQAKEDGVIPNLVMFKCIIGMCSR 456
E G + S ++ + P + + C+I + R
Sbjct: 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 4e-11
Identities = 69/353 (19%), Positives = 152/353 (43%), Gaps = 14/353 (3%)
Query: 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
+ +A R F +P L+++ ++ + + AF + R + E G A+ + + ++
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
A G A ++ ++ G+ + ALID +K G + A + M K
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT--- 290
Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
V +N+++ G + A + EM V D T +++ + ++ A++
Sbjct: 291 -VAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
+ + + T ++ S+ G E A +V+D M +K +I +ALI G+
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNALIAGYGN 403
Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVS 375
G+ A E+ + +G++ +++ +++ AC + ++ E+++ M ++ ++KP
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463
Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
+I L L E + ++ P ++ LL AC ++E+G
Sbjct: 464 HYACMIELLGREGLLD---EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 8e-11
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
P+V TY LIDG K G+V +A + M+ + +KP+ ++ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 4e-10
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
P V T N LI C ++ + +++ ++MK G+ PN TYSIL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 5e-10
Identities = 41/181 (22%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
+ D + L+T GK E+F+ MV +G+ P+ T+ +L+ C+++G V +
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610
Query: 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
+ M K ++ P+ + ++ G++G + A++ + +M P+ PD GAL+
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-----PITPDPAVWGALLN 665
Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
AC V+ + I + + + Y + N + G W+ V M + G+
Sbjct: 666 ACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724
Query: 303 D 303
D
Sbjct: 725 D 725
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 8e-10
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
+++Y++L+ ++AL+L+ MK +KP V T + LI LC
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-09
Identities = 90/409 (22%), Positives = 161/409 (39%), Gaps = 43/409 (10%)
Query: 21 YAHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLD---MDKVYHARFFNVCKS 73
+A DVS N LI+ G E + ME K + M Y
Sbjct: 319 FAVDVS----VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL----P 370
Query: 74 QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
KA+ E + + +P T ++S CA D + ++ L + GL + +
Sbjct: 371 DKAL-ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
LI +K +D EVFH + E +V ++ ++I G + +A + M
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT- 484
Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV--HPVDPDHITIGALMKACANAGQV 250
+KP+ V A ++AC + GA+ E++A V + D AL+ G++
Sbjct: 485 LKPNSVTLIAALSACARIGALMCG----KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540
Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
+ A + H+ ++ + I + G A +++ M + GV PDEV +L
Sbjct: 541 NYAWNQFN-SHEKDVVS----WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 311 IDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
+ +G V E + + I+ + Y+ ++ A +A M I
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PIT 654
Query: 370 LKPTVSTMNALITALCDGDQLPKTMEV--LSDMKSLGLCPNTITYSILL 416
P A+ AL + ++ + +E+ L+ L PN++ Y ILL
Sbjct: 655 PDP------AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 13/173 (7%)
Query: 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
+ ++N+L++ + A ++ + E+G+ D + +L+ C++SG V E FH
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613
Query: 152 EM-VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
M I PN+ Y ++D +AG++ + AY + + PD V+ AL+ AC
Sbjct: 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTE---AYNFINKMPITPDPAVWGALLNACRIH 670
Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC---ANAGQVDRAREVYKMI 260
V+ L E+ A+ H + D ++G + C A+AG+ D V K +
Sbjct: 671 RHVE-----LGELAAQ-HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-06
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
PD V +N LI + G V+ A + EM + + P+ T L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM--KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
Y TLI K+G+V+ E+F EM GIEP+V
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 9e-06
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
Y L+ AK+G D V EM +G++P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
Y I+ + G E A ++++M K+G+ P+ S LID
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 7e-05
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
Y I+ + G E A ++ +M ++G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 7e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
TY LIDG KAG+V +A + M+ + ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
PD V + LID GKVE A ++ E K +GI + +YS L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
+ TY AL+ AKAG A M++ +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 3e-04
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAF 182
G++P+V TY LIDG +AG+V +A
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAV 27
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
Y +LI+ K+GK++ E+F EM G+
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 6e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
K +KPD V +N LI ++G VD A ++L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
PD +T L+ G+V+ A +++ + K IK Y+I I+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
P+ +TY+ L+ +K VE L L ++ K+ G+ PN+ + +I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
+ +Y++L+ A + A + AL + E MK+ LKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
++Y++L+ A ++ALEL++ MK ++P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 623 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.64 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.58 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.5 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.49 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.48 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.48 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.42 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.35 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.31 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.29 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.26 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.26 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.19 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.15 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.15 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.12 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.11 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.08 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.07 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.07 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.99 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.94 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.93 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.92 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.85 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.84 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.84 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.82 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.82 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.78 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.77 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.75 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.67 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.64 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.61 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.61 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.6 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.59 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.56 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.55 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.54 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.54 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.53 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.51 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.5 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.49 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.46 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.45 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.42 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.41 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.38 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.38 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.37 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.36 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.35 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.33 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.32 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.28 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.25 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.24 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.24 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.23 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.22 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.21 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.2 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.18 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.17 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.16 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.08 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.07 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.07 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.96 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.96 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.92 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.91 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.87 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.78 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.77 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.77 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.69 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.69 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.66 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.62 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.6 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.6 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.55 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.55 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.5 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.5 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.42 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.38 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.38 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.37 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.35 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.32 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.25 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.25 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.25 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.18 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.15 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.1 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.08 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.07 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.06 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.03 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.01 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.99 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.99 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.98 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.97 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.93 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.91 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.9 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.9 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.85 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.8 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.79 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.78 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.76 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.71 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.62 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.59 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.58 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.5 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.49 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.42 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.38 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.38 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.36 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.27 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.24 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.22 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.19 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.16 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.1 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.04 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.89 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.83 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.8 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.72 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.68 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.67 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.64 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.51 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.37 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.12 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.04 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.03 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.0 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.94 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.92 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.77 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.72 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.69 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.68 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.68 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.64 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.57 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.51 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.48 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.45 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.45 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.44 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.21 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.97 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.94 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.89 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.85 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.59 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.45 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.05 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.91 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.89 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.66 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.65 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.61 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.56 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.56 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.49 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.41 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.05 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.04 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.01 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.01 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.9 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.83 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.78 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.69 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.36 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.34 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.9 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.85 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.77 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 90.53 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.35 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.31 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.28 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.24 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.19 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.09 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.0 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.9 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.4 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.15 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.58 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.36 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.15 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.83 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.53 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.94 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.86 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.56 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.23 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.16 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.69 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.57 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 85.55 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 84.97 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.66 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 84.1 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.88 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.66 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 83.4 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.18 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.97 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.83 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 82.71 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 82.04 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 81.51 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.23 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.2 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 80.74 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.74 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.63 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 80.05 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-92 Score=773.35 Aligned_cols=594 Identities=77% Similarity=1.232 Sum_probs=576.7
Q ss_pred cCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 006981 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (623)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (623)
+.+.+.+...|+.+++.|++++|+++|++|.+.|+++++..++..++..|.+.|.+++|.++|+.|+.||..+||.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (623)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (623)
|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006981 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (623)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (623)
.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.....++.||..+|++++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987556789999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006981 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (623)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (623)
+.++.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (623)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (623)
|++||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcHHHHHHhhHhhhhccCCCccchhhhhHHHHHHHHHHHHcCCCCc
Q 006981 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPT 501 (623)
Q Consensus 422 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 501 (623)
.|++++|.++|++|.+.|+.||..+|++|+++|.++|++|+++.+....|+.+...+.+.|+.+|+.+|++|++.|+.||
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999888899999999999999988888888999999999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHhHHHhhCCChhhhhcccccccccccCCChhHHHHHHHHHHhCCCCCcccccCCceeecc
Q 006981 502 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDA 581 (623)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~A~~~~~~a~~~g~~p~~~~~~~~~~~~~ 581 (623)
..|+..+++|+....+...+..|.+.+++.|...+|..++++|+++|++.++|+.++++|.+.|+.|+..+....|++|+
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~ 926 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDA 926 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEc
Confidence 99999999999888888888999999999999999999999999999887899999999999999999988777899999
Q ss_pred ccCcchHHHHHHHHHHHHHHHhhhcCccccceee
Q 006981 582 RKLEIHTAKVYLLTILKGLRHRLAAGNVVCIYFL 615 (623)
Q Consensus 582 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 615 (623)
+++++++|+|++++||+++++++++|+.+|+...
T Consensus 927 ~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~ 960 (1060)
T PLN03218 927 EELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTI 960 (1060)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHhccCcCCccee
Confidence 9999999999999999999999999999997766
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-69 Score=600.89 Aligned_cols=557 Identities=18% Similarity=0.290 Sum_probs=462.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCchH----------------------------------HHHHHHHHHhhhHH
Q 006981 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKV----------------------------------YHARFFNVCKSQKA 76 (623)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~----------------------------------~~~~l~~~~~~~~~ 76 (623)
....+++.|++++|.++|++|.+.|..+.... ....++..+.+.|+
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC
Confidence 34456689999999999999998775433222 12333445567788
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH--------------------------
Q 006981 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY-------------------------- 130 (623)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~-------------------------- 130 (623)
++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||
T Consensus 137 ~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 216 (857)
T PLN03077 137 LVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216 (857)
T ss_pred hHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999998988887776
Q ss_pred ---------HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006981 131 ---------TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (623)
Q Consensus 131 ---------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (623)
++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..||+
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 455666677777777777777776 5677888888888888888888888888888888888888888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006981 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (623)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (623)
.++.+|++.|+.+.|.+++..|.+. |+.||..+|++|+.+|++.|++++|.++|+.|.. ||..+||++|.+|++
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~ 366 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEK 366 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHh
Confidence 8888888888888888888888874 7889999999999999999999999999998864 566899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (623)
Q Consensus 282 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (623)
.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..+.+.|+.|+..++++|+++|+++|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006981 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (623)
Q Consensus 362 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~ 441 (623)
|++|. .+|..+||++|.+|++.|+.++|+++|++|.. ++.||..||+++|.+|++.|+++.+.+++..+.+.|+.
T Consensus 447 f~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 447 FHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 99997 47999999999999999999999999999986 59999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcHHHHHHhhHhhhhccCCCccchhhhhH------------HHHHHHHHHHHcCCCCcHHHHHHHH
Q 006981 442 PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKVL 509 (623)
Q Consensus 442 p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~a~~~~~~m~~~g~~p~~~~~~~~l 509 (623)
+|..++|+||++|+ ++|++.++...|+.+ ..+..+|+. +|+.+|++|++.|+.||..|+..++
T Consensus 522 ~~~~~~naLi~~y~----k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 522 FDGFLPNALLDLYV----RCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred ccceechHHHHHHH----HcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 99999999999955 456666666666666 566677775 4999999999999999999999876
Q ss_pred -hccCCC---CchhHHHhHHHhhCCChhhhhcccccccccccCCC--hhHHHHHHHHHHhCCCCCcccccCCceeecccc
Q 006981 510 -GCLQLP---YNADIRERLVENLGVSADALKRSNLCSLIDGFGEY--DPRAFSLLEEAASFGIVPCVSFKEIPVVVDARK 583 (623)
Q Consensus 510 -~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~--~~~A~~~~~~a~~~g~~p~~~~~~~~~~~~~~~ 583 (623)
+|++.+ ++.++++.|.+.+|+.|+..+|++ +++.+++. .++|.+++++| .+.|+..++.. .+.+++
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~---lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~a--Ll~ac~ 668 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC---VVDLLGRAGKLTEAYNFINKM---PITPDPAVWGA--LLNACR 668 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH---HHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHH--HHHHHH
Confidence 666654 345678888888999999999985 66655442 36888888887 25676544321 223444
Q ss_pred Ccch--HHHHHHHHHHHHHHHhhhcCccccceeeeccccc
Q 006981 584 LEIH--TAKVYLLTILKGLRHRLAAGNVVCIYFLVSDVYL 621 (623)
Q Consensus 584 ~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 621 (623)
.+.+ .++...... ..+++.+... |+++||+|.
T Consensus 669 ~~~~~e~~e~~a~~l-----~~l~p~~~~~-y~ll~n~ya 702 (857)
T PLN03077 669 IHRHVELGELAAQHI-----FELDPNSVGY-YILLCNLYA 702 (857)
T ss_pred HcCChHHHHHHHHHH-----HhhCCCCcch-HHHHHHHHH
Confidence 4433 233222222 2456755554 999999984
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=589.60 Aligned_cols=545 Identities=19% Similarity=0.289 Sum_probs=437.9
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCchH----------------------------------HHHHHH
Q 006981 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV----------------------------------YHARFF 68 (623)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~----------------------------------~~~~l~ 68 (623)
+++++||.++ +.|++++|+++|++|.+.|+.|.... +...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 4667787776 89999999999999998887544222 233455
Q ss_pred HHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 006981 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (623)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 148 (623)
..+.+.|++++|.++|++|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 56677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 006981 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (623)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (623)
++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.++|++|.+.
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-- 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-- 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 99999999999999999999988888888888888888885 467778888888888888888888888888763
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------
Q 006981 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------- 298 (623)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------- 298 (623)
++.||..||++++.+|++.|+++.|.++++.+.+.|+.++..+|++||.+|++.|++++|.++|++|.+.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 5677777777777777777777777777777776666666666666666666666666555555554332
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 299 --------------------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (623)
Q Consensus 299 --------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (623)
++.||..||++++.+|++.|.++.+.+++..+.+.|+.++..++|+|+++|+++|++++|
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 356777777777777777777777777777777777777778888888888999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-H
Q 006981 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-E 437 (623)
Q Consensus 359 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~ 437 (623)
.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|. +
T Consensus 544 ~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 544 WNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 9998887 489999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCCCCCHHHHHHHHHHHHhcHHHHHHhhHhhhhccCCCccchhhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCc
Q 006981 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517 (623)
Q Consensus 438 ~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~ 517 (623)
.|+.|+..+|++|+++|+| +|.+. +|.+++++| +++||..+|..+++.|+.+++
T Consensus 619 ~gi~P~~~~y~~lv~~l~r----~G~~~-------------------eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGR----AGKLT-------------------EAYNFINKM---PITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred hCCCCchHHHHHHHHHHHh----CCCHH-------------------HHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 7999999999999999766 33332 245556665 589999999999988888888
Q ss_pred hhHHHhHHH-hhCCChh-hhhcccccccccccCCChhHHHHHHHHHHhCCCCCc--ccccC----CceeeccccCcchHH
Q 006981 518 ADIRERLVE-NLGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPC--VSFKE----IPVVVDARKLEIHTA 589 (623)
Q Consensus 518 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~i~~~g~~~~~A~~~~~~a~~~g~~p~--~~~~~----~~~~~~~~~~~~~~~ 589 (623)
.++.+.+.+ .+.+.|+ +..|..+++++...|+|. +|.+++++|++.|+.++ .+++. .|.+....+.|+...
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~-~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~ 751 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD-EVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH-HHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence 887776654 3467775 444554456777789985 57799999999999854 34332 244555677888888
Q ss_pred HHHHHHHHHHHHHhhhcCcccc
Q 006981 590 KVYLLTILKGLRHRLAAGNVVC 611 (623)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~~~ 611 (623)
+++. .|..+..++..--..|
T Consensus 752 ~i~~--~l~~l~~~~~~~g~~~ 771 (857)
T PLN03077 752 EINT--VLEGFYEKMKASGLAG 771 (857)
T ss_pred HHHH--HHHHHHHHHHhCCcCC
Confidence 8886 7888877776544555
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-63 Score=541.84 Aligned_cols=470 Identities=22% Similarity=0.361 Sum_probs=415.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006981 64 HARFFNVCKSQKAIKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138 (623)
Q Consensus 64 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 138 (623)
...++..+.+.|++++|+++|+.|+. ++..+++.++.+|.+.|..++|+.+|+.|.. ||..+|+.++.+|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence 33444555677999999999999864 5666778889999999999999999999873 99999999999999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006981 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 218 (623)
+.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+|++|... ++.||..+|+.||.+|++.|++++|.++|++|.. .++.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 529 lf~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 529 AYGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999874 7899999999999999999999999999999976 6789999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376 (623)
Q Consensus 297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (623)
+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (623)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (623)
|++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred cHHHHHHhhHhhhhccCCCccchhhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCchhHHHhHHHhhCCChhhhh
Q 006981 457 RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALK 536 (623)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (623)
.+. ...|..+|++|++.|+.||..++..+++.|... -.+... +.+.. +..+.+
T Consensus 767 ----~G~-------------------le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~-y~ka~~-l~~~v-~~f~~g- 819 (1060)
T PLN03218 767 ----KDD-------------------ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR-FEKACA-LGEPV-VSFDSG- 819 (1060)
T ss_pred ----CCC-------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHHhh-hhhhh-hhhhcc-
Confidence 221 234778899999999999999999888755310 000000 00000 001111
Q ss_pred cccccccccccCCChhHHHHHHHHHHhCCCCCcccc
Q 006981 537 RSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSF 572 (623)
Q Consensus 537 ~~~~~~~i~~~g~~~~~A~~~~~~a~~~g~~p~~~~ 572 (623)
-......|...|..+|++|++.|+.|+..+
T Consensus 820 ------~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 820 ------RPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred ------ccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 011112366677777777777777776444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=540.81 Aligned_cols=497 Identities=21% Similarity=0.313 Sum_probs=435.4
Q ss_pred hhhHHHHHHHHHhhhCC-----CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 006981 72 KSQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (623)
Q Consensus 72 ~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 146 (623)
.+.|++++|+++|+.|. .||..+|+.++.+|++.++.+.|.+++..|.+.|+.||..+|+.|+++|++.|++++|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 33444555555554442 4788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 006981 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (623)
.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+.
T Consensus 178 ~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 178 RRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred HHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 99999997 68999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (623)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 306 (623)
++.||..++++|+++|++.|++++|.++|+.|.+ +|..+||+||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 254 --g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 254 --GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred --CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 7899999999999999999999999999999964 4679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
|++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||..+||+||.+|++
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997 5899999999999999
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcHHHHHHhh
Q 006981 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTLN 465 (623)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~~~~a~~~~ 465 (623)
+|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|++||++|++ +|.+.
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G~~~ 479 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EGLLD 479 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cCCHH
Confidence 999999999999999999999999999999999999999999999999985 6999999999999999766 33333
Q ss_pred HhhhhccCCCccchhhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCchhHHHhHHH-hhCCChh-hhhccccccc
Q 006981 466 EHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE-NLGVSAD-ALKRSNLCSL 543 (623)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 543 (623)
+ |.++|++ .++.||..+|..++..|..+++.+..+.+.+ .+++.|+ ...|..++.+
T Consensus 480 e-------------------A~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 480 E-------------------AYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL 537 (697)
T ss_pred H-------------------HHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 3 3444443 3689999999999877776666666555443 4577775 5677766667
Q ss_pred ccccCCChhHHHHHHHHHHhCCCC--CcccccC----CceeeccccCcchHHHHHHHHHHHHHHHhhhcCcccc
Q 006981 544 IDGFGEYDPRAFSLLEEAASFGIV--PCVSFKE----IPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGNVVC 611 (623)
Q Consensus 544 i~~~g~~~~~A~~~~~~a~~~g~~--p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 611 (623)
+...|+| ++|.+++++|.+.|+. |..++.. .+.++.....|+...+++- .|..+..++...-..|
T Consensus 538 y~~~G~~-~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~--~l~~l~~~~~~~gy~~ 608 (697)
T PLN03081 538 YNSSGRQ-AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ--KLDELMKEISEYGYVA 608 (697)
T ss_pred HHhCCCH-HHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH--HHHHHHHHHHHcCCCC
Confidence 7777887 5788999999999996 5544432 2445566677877777765 6777766666544444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-59 Score=510.48 Aligned_cols=416 Identities=19% Similarity=0.261 Sum_probs=354.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHcCCC
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKD 107 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~ 107 (623)
...+.+.|++++|+++|+.|...+....+..++..++..|.+.++++.|.+++..+. .||..+||.++.+|++.|+
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~ 173 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM 173 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCC
Confidence 344457889999999999988766444566667777788888888888888887763 6788889999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
++.|.++|++|. .||.++|++++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..
T Consensus 174 ~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~ 249 (697)
T PLN03081 174 LIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249 (697)
T ss_pred HHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999888885 4788889999999999999999999999998888888888999999998888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006981 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (623)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (623)
+.+.|+.||..+|++||.+|++.|++++|.++|++|. .+|.++|++++.+|++.|++++|.++|++|.+.|+.|
T Consensus 250 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 8888888888889999999999999999999988885 3688889999999999999999999999888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (623)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (623)
|..+|++++.+|++.|++++|.+++..|.+.|+.||..+++++|.+|++.|++++|.++|++|.+ ||..+||++|.
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~ 399 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIA 399 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHH
Confidence 88899999999999999999999999988888888888899999999999999999998888853 67888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVE 426 (623)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~ 426 (623)
+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|++|.+ .|+.|+..+|+.+++++++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999988888889999999999999999999999999988875 588888888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHh
Q 006981 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464 (623)
Q Consensus 427 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~ 464 (623)
+|.+++++| ++.|+..+|++|+.+|.. +++.|...
T Consensus 480 eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 480 EAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred HHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 888887654 578888889999888765 44444443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-26 Score=261.47 Aligned_cols=517 Identities=16% Similarity=0.082 Sum_probs=345.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCh
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (623)
...+.+.|++++|.+.++.+.+.+ +.+......++..+...|++++|.++|+++. +.+...+..+...+...|++
T Consensus 336 a~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 413 (899)
T TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDP 413 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCh
Confidence 344446666666666666666554 3444444555555666666777777766543 33455666666666667777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
++|.+.++.+.+.. +........++..+.+.|++++|.++++.+.... +++..+|..+...|...|++++|.+.|+++
T Consensus 414 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 414 SEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKA 491 (899)
T ss_pred HHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 77777777666553 2233445556667777777777777777776543 446677777888888888888888888877
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 006981 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (623)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 268 (623)
.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+...+.+.|+.++|..+++++.+.+ +.+
T Consensus 492 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 566 (899)
T TIGR02917 492 LSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID---PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQE 566 (899)
T ss_pred HhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 7653 3345566677777778888888888888776532 3456677777788888888888888888877765 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (623)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (623)
...+..++..|.+.|++++|..+++.+..... .+...|..+...+...|++++|...++.+.+.. +.+...+..+..+
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 644 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA 644 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 67777888888888888888888888876543 366778888888888888888888888887764 3456677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428 (623)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 428 (623)
|.+.|++++|...|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+.+.|++++|
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888887654 3457788888888888888888888888887764 45667777788888888889998
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHhhHhhhhccCCCccc---------hhhhhHHHHHHHHHHHHcC
Q 006981 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI---------ENKWTSLALMVYREAIVAG 497 (623)
Q Consensus 429 ~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~m~~~g 497 (623)
.+.++++.+.+ |+..++..+..++.+ ++++|.+..+......+..... ..+-...|...|+++++.
T Consensus 723 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 799 (899)
T TIGR02917 723 IQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK- 799 (899)
T ss_pred HHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-
Confidence 88888888753 444555556666554 5666665554433222221100 011123478888888765
Q ss_pred CCCcHHHHHHHHh--ccCCCCchhHHHhHHHhhCCChhhh-hcccccccccccCCChhHHHHHHHHHHhCCCCCc
Q 006981 498 TIPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSADAL-KRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPC 569 (623)
Q Consensus 498 ~~p~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~g~~~~~A~~~~~~a~~~g~~p~ 569 (623)
.|+.......++ +...+. .+....+.+.+.+.|+.. ....++.+....|+ .++|...+++|++ ..|+
T Consensus 800 -~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~--~~~~ 869 (899)
T TIGR02917 800 -APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPLLRKAVN--IAPE 869 (899)
T ss_pred -CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--hCCC
Confidence 355443332222 222333 445555566666666433 22222333344565 3678899999987 4454
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-26 Score=259.19 Aligned_cols=513 Identities=13% Similarity=0.059 Sum_probs=408.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcC
Q 006981 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASS 105 (623)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 105 (623)
......+.+.|++++|.+.|+++.+.+ |.+...+..++..+...|+.++|.+.|+.+. +.+...+..++..+.+.
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc
Confidence 334455568999999999999998876 5666667777777888899999999998764 33455677788889999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
|++++|..+++.+.... +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|
T Consensus 445 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998754 6678899999999999999999999999998764 446778888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006981 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (623)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 265 (623)
+++...+ +.+..++..+...+.+.|+.++|..++.++.... +.+...+..++..|.+.|++++|..+++.+.+..
T Consensus 523 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 523 EKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 9998764 4577888999999999999999999999987642 4456678889999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (623)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (623)
+.+..+|..+...|.+.|++++|...|+++.+... .+...+..+...+.+.|++++|..+++.+.+.. +.+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 66788999999999999999999999999987653 266778889999999999999999999998764 4567889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (623)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (623)
...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.|+++... .|+..++..+..++.+.|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCH
Confidence 999999999999999999998775 457778888999999999999999999999885 46667888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHhhHhhhhccCCCccchhhhh-----------HHHHHHHHH
Q 006981 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT-----------SLALMVYRE 492 (623)
Q Consensus 426 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~-----------~~a~~~~~~ 492 (623)
++|.+.++++.+.. ..+...+..+...|.+ ++++|....+......+. +...+. ..|+..+++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD---NAVVLNNLAWLYLELKDPRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999999988753 3456677777777664 677777776655433332 222222 247788887
Q ss_pred HHHcCCCCcHHHHHHHHhc--cCCCCchhHHHhHHHhhCCCh-hhhhcccccccccccCCChhHHHHHHHHHH
Q 006981 493 AIVAGTIPTVEVVSKVLGC--LQLPYNADIRERLVENLGVSA-DALKRSNLCSLIDGFGEYDPRAFSLLEEAA 562 (623)
Q Consensus 493 m~~~g~~p~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g~~~~~A~~~~~~a~ 562 (623)
.+. ..|+...+...++. ...++-.+....+.+.+...| ++..+.+++..+...|+ .++|..++++++
T Consensus 829 ~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 898 (899)
T TIGR02917 829 ALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR-KAEARKELDKLL 898 (899)
T ss_pred HHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHh
Confidence 776 35665544433333 334444555556666666656 45555554445555676 467888988875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=193.77 Aligned_cols=299 Identities=13% Similarity=0.109 Sum_probs=149.7
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC
Q 006981 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQ 177 (623)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~ 177 (623)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566777777777776653 33455666666666677777777777766665421111 2345666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHcCChHHHH
Q 006981 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAR 254 (623)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~ 254 (623)
+++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.+..+.... +..+. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 666666666666542 3345566666666666666666666666665431 10111 112233444455555555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
..|+++.+.. +.+...+..+...|.+.|++++|.++|+++...+......++..++.+|.+.|++++|...++.+.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555555433 223344445555555555555555555555443221112334444444444444444444444444332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhhHHHHHHHHHHCCCCC
Q 006981 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCP 407 (623)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p 407 (623)
|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.++++|.+.++.|
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 22233344444444444444444444444332 2444444444433332 224444444444444433333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-20 Score=187.92 Aligned_cols=303 Identities=17% Similarity=0.110 Sum_probs=253.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcc
Q 006981 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD---RVVFNALITACGQS 210 (623)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 210 (623)
...+...|++++|...|.++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445678899999999999999874 34567899999999999999999999999987542222 25678889999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHH
Q 006981 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~ 286 (623)
|++++|..+|.++.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 121 g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999864 245677899999999999999999999999988653322 224567788889999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
+|...|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.+..+|.+.|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999876432 4567788889999999999999999999876533335678899999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCC
Q 006981 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPN 443 (623)
Q Consensus 367 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~g~~p~ 443 (623)
+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.+.++.|+
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 76 466667788999999999999999999998875 7999999988887765 5689999999999998777766
Q ss_pred HH
Q 006981 444 LV 445 (623)
Q Consensus 444 ~~ 445 (623)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 65
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-17 Score=186.98 Aligned_cols=373 Identities=16% Similarity=0.129 Sum_probs=220.4
Q ss_pred ccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHH----------------HHHHHHHhhhHHHHHHHHHh
Q 006981 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------ARFFNVCKSQKAIKEAFRFF 84 (623)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~ 84 (623)
.|+++.........+.+.|+.++|.+.++++.+.. |.+..+. ...++.+...|++++|.+.|
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY 135 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence 45566666666666778889999999888888877 3333321 12233455668888888888
Q ss_pred hhCC---CCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--
Q 006981 85 KLVP---NPTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-- 158 (623)
Q Consensus 85 ~~~~---~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-- 158 (623)
++.. +++.. ............|+.++|+..++++.+.. +.+...+..+...+...|+.++|++.++++.....
T Consensus 136 ~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 136 DKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 8764 22321 11111222234588888888888888764 45667777888888888888888888887754310
Q ss_pred ----------------C--------------CCHHHH---------------------HHHHHHHHhcCCHHHHHHHHHH
Q 006981 159 ----------------E--------------PNVHTY---------------------GALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 159 ----------------~--------------~~~~~~---------------------~~li~~~~~~g~~~~A~~~~~~ 187 (623)
. |+.... ......+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0 000000 0112345667888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH------------HHHHHHHHHcCChHHHHH
Q 006981 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------------GALMKACANAGQVDRARE 255 (623)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~------------~~ll~~~~~~g~~~~A~~ 255 (623)
..+.. +.+...+..+..++.+.|++++|...|++..+.... .+....+ ......+.+.|++++|..
T Consensus 295 aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 295 AVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 87763 336777888888888888888888888887764211 1111111 122345677888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (623)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (623)
.|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...+. .++.++|..+++.+.....
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQR 449 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHH
Confidence 888888775 556677778888888888888888888888775432 3334444433332 2334444444333211100
Q ss_pred --------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 006981 336 --------SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 336 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
......+..+...+...|++++|.+.|++..+... .+...+..+...|.+.|++++|...++++.+
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00011122333344444555555555554444321 1233344444445555555555555554443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-18 Score=194.17 Aligned_cols=389 Identities=11% Similarity=0.039 Sum_probs=289.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCC---HHHHHH----------
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT---LSTFNM---------- 97 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~---~~~~~~---------- 97 (623)
..++..|++++|+..|++..+.+ |.+...+..++..+...|++++|+..|++.. .|+ ...|..
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 34557899999999999988877 6677777778888888889999999988754 222 112221
Q ss_pred --HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006981 98 --LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (623)
Q Consensus 98 --li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (623)
....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 2345678899999999999988874 4566777888889999999999999999988764 335666777777764 4
Q ss_pred CCHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 006981 176 GQVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (623)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (623)
++.++|+..++.+...... .....+..+...+...|++++|.+.|++..+.. +.+...+..+...|.+.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHc
Confidence 6788888888765432100 011234456677788899999999999987642 23456677788889999
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcC
Q 006981 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHAG 318 (623)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~---------~~~~li~~~~~~g 318 (623)
|++++|...++++.+.. +.+...+..+...+.+.++.++|+..++.+......++.. .+......+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999999988765 4556666666667778899999999888765432222221 1234456778889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHH
Q 006981 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (623)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (623)
+.++|..+++. .+.+...+..+...+.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999988872 24566677888889999999999999999988764 3467888899999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 399 DMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 399 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
...+. .| +..++..+..++...|++++|.++++++.+.
T Consensus 662 ~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 662 KLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 87764 44 4555667778888999999999999998864
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-18 Score=170.16 Aligned_cols=419 Identities=13% Similarity=0.108 Sum_probs=319.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHcC
Q 006981 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASS 105 (623)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~ 105 (623)
+.....+.+.|++.+|.+--...-.++ |.+.....++...+.+..+.+.....-.. ..+.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 344566678999999988777666666 33333333333334444444443332221 2244567899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY-GALIDGCAKAGQVAKAFGA 184 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~ 184 (623)
|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+. .|+.... +.+.......|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999874 445778999999999999999999999998876 5665443 3455555668999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006981 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKY 263 (623)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (623)
|.+..+.. +-=.+.|+.|...+-..|+...|++.|++...- .|+ ...|-.|...|...+.++.|...+.+....
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 98888762 223578888988899999999999999998753 444 447888899999999999999999888776
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006981 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (623)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (623)
. +....++..|...|...|..+.|+..+++.++.... =...|+.+..++-..|++.+|.+.+....... +-.....+
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 4 445677888888899999999999999998876432 24678999999999999999999999988764 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 006981 344 SLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACER 421 (623)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 421 (623)
.|...|...|.+++|..+|....+. .|. ....+.|...|-+.|++++|+..+++.++ +.|+ ...|+.+-..|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 8999999999999999999988764 344 45688899999999999999999999887 6787 5578888899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcHHHHHHhhHhhhh
Q 006981 422 KDDVEVGLMLLSQAKEDGVIPNLVM-FKCIIGMCSRRYEKARTLNEHVLS 470 (623)
Q Consensus 422 ~g~~~~a~~~~~~~~~~g~~p~~~~-~~~li~~~~~~~~~a~~~~~~~~~ 470 (623)
.|+++.|.+.+.+.+. +.|...- .+-|-.. |+++|.+.+++.+
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi----~kDsGni~~AI~s 478 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASI----YKDSGNIPEAIQS 478 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHH----hhccCCcHHHHHH
Confidence 9999999999988887 5565432 3334333 6667766665443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.3e-17 Score=173.55 Aligned_cols=329 Identities=12% Similarity=0.050 Sum_probs=183.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (623)
Q Consensus 97 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (623)
.++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|.+.|+++.+.. +.+...+..+...+.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34455556666666666666665543 2223334444455555666666666666666543 234455566666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006981 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (623)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 256 (623)
++++|...+++..+.. +.+...+..+...+...|+.++|...+..+.... +.+...+..+ ..+.+.|++++|...
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV---PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 6666666666665542 2234455556666666666666666666554321 1112222222 235556666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 006981 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQEAKN 332 (623)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~ 332 (623)
++.+.+....++...+..+...+.+.|++++|...+++....... +...+..+...+...|++++ |...++...+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 666555432233333444455566666666666666666655322 44555556666666666654 5666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHH-
Q 006981 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT- 411 (623)
Q Consensus 333 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t- 411 (623)
.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|+..|+++.+. .|+...
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~ 354 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKW 354 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHH
Confidence 43 2345566666666666666666666666666543 223445555666666666666666666666653 344322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
+..+..++...|+.++|...|++..+
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22334456666666666666666655
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-18 Score=167.52 Aligned_cols=392 Identities=15% Similarity=0.155 Sum_probs=325.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChH
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (623)
+...+..+++...+--....+.. +........++..++..|++++|+.+++.+. +..+..|..+..++...|+.+
T Consensus 90 ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~ 167 (966)
T KOG4626|consen 90 AIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLE 167 (966)
T ss_pred hhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCc
Confidence 33445556666655555555554 6777788889999999999999999999764 456789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 110 GAFQVLRLVQEAGLKADCKL-YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
.|.+.|....+. .|+... .+.+...+...|++++|..-|.+.++. .|. .+.|+.|.-.+-..|+...|++-|++
T Consensus 168 ~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~e 243 (966)
T KOG4626|consen 168 LAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEE 243 (966)
T ss_pred ccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHH
Confidence 999999999875 566544 344555566689999999999888876 343 56899999999999999999999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006981 188 MRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (623)
Q Consensus 188 m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 265 (623)
..+. .|+ ...|..|...|...+.++.|...+.+.... .|+ .+++..+...|-..|.++.|+..+++..+..
T Consensus 244 Avkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~- 316 (966)
T KOG4626|consen 244 AVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ- 316 (966)
T ss_pred hhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-
Confidence 9876 444 567888999999999999999999988753 454 5677888888999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (623)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (623)
+.-+..|+.|..++-..|+..+|.+.+.+.+..... -....+.|...|...|.+++|..+|....+.. +--....+.|
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNL 394 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNL 394 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhH
Confidence 455789999999999999999999999999886432 44677889999999999999999999888753 2235678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 006981 346 MGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKD 423 (623)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 423 (623)
...|-+.|++++|...+++..+. .|+ ...|+.+...|-..|+.+.|++.+.+.+. +.|. ...++.|.+.+..+|
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsG 470 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSG 470 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccC
Confidence 99999999999999999998874 566 46899999999999999999999999887 4675 567889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH
Q 006981 424 DVEVGLMLLSQAKEDGVIPNLV 445 (623)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~~~ 445 (623)
++.+|++-+++.++ ++||..
T Consensus 471 ni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 471 NIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred CcHHHHHHHHHHHc--cCCCCc
Confidence 99999999999988 566643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-17 Score=174.62 Aligned_cols=321 Identities=9% Similarity=0.009 Sum_probs=155.5
Q ss_pred HhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 006981 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (623)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 147 (623)
+.+.|++++|..+++... +.+...+..++......|++++|...++.+.+.. +.+...+..+...+...|++++|.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 334455555555554432 2233333444444444555555555555555543 333445555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 006981 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (623)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (623)
..+++..+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...++.+....
T Consensus 131 ~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 131 DLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 5555555432 22344555555555555555555555555543321 112222222 22445555555555555544321
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCC
Q 006981 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIPD 303 (623)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~~~~p~ 303 (623)
+ .++......+...+.+.|++++|...++.+.+.+ +.+...+..+...|.+.|++++ |...|++..+.... +
T Consensus 208 -~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~ 283 (656)
T PRK15174 208 -A-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-N 283 (656)
T ss_pred -C-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-C
Confidence 0 1122223333444555555555555555555543 3344555555555555555553 45555555544322 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 006981 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALIT 382 (623)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~ 382 (623)
...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+.. |+. ..+..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHH
Confidence 4455555555555555555555555555443 2233444455555555555555555555555432 222 22222344
Q ss_pred HHHcCCChhhHHHHHHHHHH
Q 006981 383 ALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~~ 402 (623)
++...|+.++|.+.|++..+
T Consensus 361 al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 45555555555555555544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-16 Score=170.92 Aligned_cols=388 Identities=12% Similarity=0.054 Sum_probs=248.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChH
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (623)
+.+.+.|++++|+..|++..+.. | +..++..++..+...|++++|+..++... +.+...|..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~--p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK--P-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--C-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 44557888888888888888765 3 34556666777777788888888887653 446667888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH---------------------
Q 006981 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL--------------------- 168 (623)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------------- 168 (623)
+|+.-|......+ ..+......++..+... .+........+.. +++...+..+
T Consensus 212 eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~----~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 212 DALLDLTASCIID-GFRNEQSAQAVERLLKK----FAESKAKEILETK-PENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHHHHHHHH----HHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 8888877665543 22222222222211111 1111111111110 0110000000
Q ss_pred ---------HHHH------HhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 006981 169 ---------IDGC------AKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (623)
Q Consensus 169 ---------i~~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 231 (623)
+..+ ...+++++|.+.|++....+ ..| ....|+.+...+...|++++|...+++.... .
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~ 361 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----D 361 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C
Confidence 0000 12356778888888777654 222 3455666777777788888888888877653 3
Q ss_pred CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 232 PD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (623)
Q Consensus 232 ~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 310 (623)
|+ ...|..+...+...|++++|...|+.+.+.+ +.+..+|..+...+...|++++|...|++..+.... +...+..+
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~l 439 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQL 439 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHH
Confidence 43 4466777777778888888888888877765 556777888888888888888888888887776432 45566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHH
Q 006981 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITAL 384 (623)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~ 384 (623)
...+.+.|++++|+..++...+.. +.+...++.+...+...|++++|...|++..+.....+. ..++.....+
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 777778888888888888777653 345677777788888888888888888877654321111 1112222233
Q ss_pred HcCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 385 CDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
...|++++|.+++++.... .| +...+..+...+.+.|++++|...|++..+.
T Consensus 519 ~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3467888888888887664 34 3446777778888888888888888877653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-16 Score=174.32 Aligned_cols=403 Identities=10% Similarity=0.007 Sum_probs=304.3
Q ss_pred hHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHH
Q 006981 28 QLHSYNRL-IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCA 103 (623)
Q Consensus 28 ~~~~~~~l-~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 103 (623)
.+.-|..+ ...|+.++|++++.+..... +.....+..++..+...|++++|..+|++. .+.+...+..+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33445444 48999999999999998744 456666777888888999999999999984 4566778888889999
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (623)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (623)
..|++++|+..++.+.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|+.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999999874 55666 8889999999999999999999999874 3466677778888899999999999
Q ss_pred HHHHHHhCCCCCCH------HHHHHHHHHHH-----ccCCH---HHHHHHHHHHhhCCCCCCCCHH-HH----HHHHHHH
Q 006981 184 AYGIMRSKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TI----GALMKAC 244 (623)
Q Consensus 184 ~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~~~~~~~~~~-~~----~~ll~~~ 244 (623)
.++.... .|+. .....++.... ..+++ ++|++.++.+.... ...|+.. .+ ...+..+
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHHH
Confidence 9987664 2221 11222232222 22234 77888888887531 1223221 11 1113345
Q ss_pred HHcCChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCH
Q 006981 245 ANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKV 320 (623)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~li~~~~~~g~~ 320 (623)
...|++++|+..|+.+.+.+.+ |+ ..-..+...|...|++++|+.+|+++....... .......+..++.+.|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 6779999999999999887632 22 223335778999999999999999988654221 134456667788999999
Q ss_pred HHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 321 EAAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 321 ~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
++|..+++.+.+... .|+ ...+..+...+...|++++|.++++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 999999999987531 123 2345667788999999999999999998764 4567889999999999
Q ss_pred CCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006981 387 GDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (623)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (623)
.|++++|++.+++..+. .|+ ...+......+...|++++|..+++++++. .|+..
T Consensus 406 ~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 99999999999999884 575 556667777889999999999999999973 45544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-16 Score=169.26 Aligned_cols=358 Identities=9% Similarity=-0.053 Sum_probs=262.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCh
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (623)
..++.+.|++++|++.++...+.+ |.....+..++..+...|++++|+..|.... +.+......++..+..
T Consensus 167 a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~---- 240 (615)
T TIGR00990 167 AACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK---- 240 (615)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----
Confidence 345568899999999999999887 6777777778888899999999998886542 2222222222221111
Q ss_pred HHHHHHHHHHHHcCCCCC---HH------------------------------HHHHHHHH---HHHcCChhHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKAD---CK------------------------------LYTTLITT---CAKSGKVDAMFEVFHE 152 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~---~~------------------------------~~~~li~~---~~~~g~~~~A~~~~~~ 152 (623)
..+........+.. +++ .. .+..+... ....+++++|.+.|+.
T Consensus 241 ~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~ 319 (615)
T TIGR00990 241 KFAESKAKEILETK-PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK 319 (615)
T ss_pred HHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 11111111111111 110 00 00001000 0123678999999999
Q ss_pred HHHCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 006981 153 MVNAG-I-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230 (623)
Q Consensus 153 m~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 230 (623)
..+.+ . +.+...|+.+...+...|++++|+..|++..... +.+...|..+...+...|++++|...|++.....
T Consensus 320 al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--- 395 (615)
T TIGR00990 320 ALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--- 395 (615)
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 98764 2 2345678888899999999999999999998763 2336688888899999999999999999987642
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (623)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 310 (623)
+.+..++..+...+...|++++|...|++..+.+ +.+...+..+...+.+.|++++|+..|++..+.... +...+..+
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~l 473 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYY 473 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 3456788889999999999999999999999876 567788889999999999999999999999876432 56788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 311 IDFAGHAGKVEAAFEILQEAKNQGISVGI------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (623)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 384 (623)
...+...|++++|...|+...+.....+. ..++.....+...|++++|.+++++..+.. +.+...+..+...+
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~ 552 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLL 552 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 99999999999999999998876422111 112223334455799999999999987764 23456788999999
Q ss_pred HcCCChhhHHHHHHHHHHC
Q 006981 385 CDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~ 403 (623)
.+.|++++|++.|++..+.
T Consensus 553 ~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 553 LQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-15 Score=143.20 Aligned_cols=410 Identities=16% Similarity=0.178 Sum_probs=290.9
Q ss_pred ccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh---hh-----------------------
Q 006981 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQ----------------------- 74 (623)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~---~~----------------------- 74 (623)
.|..+. .-...-.+|.+|.+.++.-+|+.|...|+. -...+...++++.. +.
T Consensus 112 ~~~~V~-~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~-vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~s 189 (625)
T KOG4422|consen 112 DPLQVE-TENNLLKMISSREVKDSCILYERMRSENVD-VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSS 189 (625)
T ss_pred Cchhhc-chhHHHHHHhhcccchhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccc
Confidence 344444 333445677899999999999999999863 22222222222210 00
Q ss_pred -HHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006981 75 -KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (623)
Q Consensus 75 -~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 153 (623)
++-+-|- ++-+..+.+..+|..+|.++|+-...+.|.+++++......+.+..+||.+|.+-.-.. ..++..+|
T Consensus 190 WK~G~vAd-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EM 264 (625)
T KOG4422|consen 190 WKSGAVAD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEM 264 (625)
T ss_pred cccccHHH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHH
Confidence 0112233 55556677888999999999999999999999999988877999999999998754432 37899999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHhhC--
Q 006981 154 VNAGIEPNVHTYGALIDGCAKAGQVAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAE-- 226 (623)
Q Consensus 154 ~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~-- 226 (623)
....+.||..|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++...
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 999999999999999999999998765 56788899999999999999999999999887644 44455544331
Q ss_pred CCCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 227 VHPVD----PDHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQTGDWEFACSVYDDM 295 (623)
Q Consensus 227 ~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m 295 (623)
+..++ .|..-|...++.|.+..+.+.|.++........ +.|+ ..-|..+....|+....+.-...++.|
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222 245667788899999999999999988775432 2222 223667888889999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C--------HH-----HHHHH
Q 006981 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-N--------WQ-----KALEL 361 (623)
Q Consensus 296 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~--------~~-----~A~~~ 361 (623)
.-.-.-|+..+...++.+..-.|.++-.-+++..++..|..-+.....-++..+++.. + +. -|..+
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 9887888999999999999999999999999999888775544444444444444433 1 00 11112
Q ss_pred HH-------HHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 362 YE-------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG----LCPNTITYSILLVACERKDDVEVGLM 430 (623)
Q Consensus 362 ~~-------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~ 430 (623)
++ +|.+. .......+.....+.+.|+.++|.++|....+++ ..|......-++++..+..+...|..
T Consensus 505 ~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 21 12222 2344556666677778888888888887775543 22334444456666677777777777
Q ss_pred HHHHHHHCC
Q 006981 431 LLSQAKEDG 439 (623)
Q Consensus 431 ~~~~~~~~g 439 (623)
+++.|...+
T Consensus 583 ~lQ~a~~~n 591 (625)
T KOG4422|consen 583 VLQLASAFN 591 (625)
T ss_pred HHHHHHHcC
Confidence 777776544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-14 Score=155.04 Aligned_cols=443 Identities=13% Similarity=0.105 Sum_probs=305.9
Q ss_pred CccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHH-HHH
Q 006981 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST-FNM 97 (623)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~ 97 (623)
.+|..+...-...-...+.|+++.|++.|++..+.+ |.+. .++ -++.++...|+.++|+.++++...|+... +..
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 344444433333333449999999999999999988 4442 223 45555666699999999999987654333 333
Q ss_pred H--HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006981 98 L--MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (623)
Q Consensus 98 l--i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (623)
+ ...+...|++++|+++++.+.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 3 557888899999999999999886 555777888899999999999999999999876 56666665555555556
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH------HHHHHHH-----
Q 006981 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC----- 244 (623)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~------~~ll~~~----- 244 (623)
++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++..+-.. -+.+....+ ..+++.-
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 67767999999999884 44677778888999999999999888765332 112221111 1111100
Q ss_pred HHcCC---hHHHHHHHHHHHhc--CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 245 ANAGQ---VDRAREVYKMIHKY--NIKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (623)
Q Consensus 245 ~~~g~---~~~A~~~~~~~~~~--~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 315 (623)
....+ .+.|+.-++.+... ..++....| --.+-++...|++.++++.|+.|...+......+-.++.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 01122 34445555555442 223332222 2345667788999999999999998876544457888999999
Q ss_pred hcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCHH-H
Q 006981 316 HAGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-------------LKPTVS-T 376 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~~~~~-~ 376 (623)
..+++++|..++..+.... ..++......|.-+|...+++++|..+++.+.+.. ..||-. .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 9999999999999986643 23345556788889999999999999999988732 123332 3
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 006981 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS 455 (623)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~ 455 (623)
+..++..+...|+..+|.+.++++.... +-|......+.+.+...|.+.+|++.++.... +.|+.. +.........
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHH
Confidence 3445677888999999999999997752 33788888888999999999999999977665 355533 2223332222
Q ss_pred --hcHHHHHHhhHhhhhccCCC
Q 006981 456 --RRYEKARTLNEHVLSFNSGR 475 (623)
Q Consensus 456 --~~~~~a~~~~~~~~~~~~~~ 475 (623)
+.+.+|..+.+......+..
T Consensus 496 ~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 496 ALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred hhhhHHHHHHHHHHHHhhCCCc
Confidence 25777777776665544443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-15 Score=162.23 Aligned_cols=389 Identities=13% Similarity=0.081 Sum_probs=283.4
Q ss_pred HHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 006981 68 FNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (623)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 144 (623)
..+..-.|+.++|+++|.+.. +.+...+..+...+...|++++|.++++...+.. +.+...+..+...+...|+++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 344556688999999998754 3456679999999999999999999999998764 556777888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 006981 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (623)
+|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|++.++...
T Consensus 101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 9999999998873 44566 8889999999999999999999999874 3355566677888888999999999998765
Q ss_pred hCCCCCCCCH------HHHHHHHHHHH-----HcCCh---HHHHHHHHHHHhc-CCCCCH-HHH----HHHHHHHHhcCC
Q 006981 225 AEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCSQTGD 284 (623)
Q Consensus 225 ~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~-~~~----~~li~~~~~~g~ 284 (623)
. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+. ..+ ...+..+...|+
T Consensus 178 ~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 178 L-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred C-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 3 2331 11222222222 12234 7788888888754 112221 111 111344567799
Q ss_pred HHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 006981 285 WEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQKALE 360 (623)
Q Consensus 285 ~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 360 (623)
+++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+.+.+..... .......+..++.+.|++++|..
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999987642 433 22235678999999999999999987654211 13456667778899999999999
Q ss_pred HHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 361 LYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (623)
Q Consensus 361 ~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 426 (623)
+++.+.+... .|+ ...+..+...+...|+.++|+++++++.... +-+...+..+...+...|+++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 9999986531 123 2345667788999999999999999998752 336777888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--hcHHHHHHhhHhhh
Q 006981 427 VGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEKARTLNEHVL 469 (623)
Q Consensus 427 ~a~~~~~~~~~~g~~p~~~-~~~~li~~~~--~~~~~a~~~~~~~~ 469 (623)
+|++.+++..+ +.|+.. .+..+...+. +++++|....+...
T Consensus 411 ~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 411 AAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999987 446542 2222222222 26677666655544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-13 Score=150.95 Aligned_cols=505 Identities=11% Similarity=0.001 Sum_probs=271.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CC-CHHHHHHHHHHHHcCCChHHHHH
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCASSKDSEGAFQ 113 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~ 113 (623)
..|++++|++.|+...+.+ |.+..++..+.+++...|+.++|+..+++.. .| |...+..+ ..+ +++.+|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHH
Confidence 4477777777777777666 5556666666666666677777777666543 22 23333322 111 55556666
Q ss_pred HHHHHHHcC--------------------------------------CCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHH
Q 006981 114 VLRLVQEAG--------------------------------------LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 114 ~~~~m~~~g--------------------------------------~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~ 154 (623)
+++++.+.. ..|+..+.... ...|.+.|++++|++++.++.
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 666555442 11122222222 455555666666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC
Q 006981 155 NAGIEPNVHTYGALIDGCAK-AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (623)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 233 (623)
+.+ +.+..-...|..+|.. .++ +.+..+++. .++-+...+..+...+.+.|+.++|.+++.++...... .|+
T Consensus 210 k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~-~~~ 282 (987)
T PRK09782 210 QQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT-DAQ 282 (987)
T ss_pred hcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC-CCc
Confidence 554 2233334444455555 244 555555332 12346666777888888889888888888876542111 111
Q ss_pred HHH------------------------------HHHHHHHHHHcCChHHHHHHH--------------------------
Q 006981 234 HIT------------------------------IGALMKACANAGQVDRAREVY-------------------------- 257 (623)
Q Consensus 234 ~~~------------------------------~~~ll~~~~~~g~~~~A~~~~-------------------------- 257 (623)
..+ .-.++..+.+.++++.+.++.
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 111 111234444555544444432
Q ss_pred ---HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC---HHHHHH----
Q 006981 258 ---KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGK---VEAAFE---- 325 (623)
Q Consensus 258 ---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~---~~~a~~---- 325 (623)
..+.+. .+.+......+.-...+.|+.++|.++|+..... ...++.....-++..|.+.+. ..++..
T Consensus 363 ~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 363 RLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 222222 1445555555555566778888888888776652 122233344455666655544 222211
Q ss_pred ------------------HHHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 326 ------------------ILQEAKNQ-GI-SV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (623)
Q Consensus 326 ------------------~~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 383 (623)
........ +. ++ +...+..+..++.. ++.++|...+.+.... .|+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHH
Confidence 12222221 11 23 55666666666665 6777777766665543 3554333333444
Q ss_pred HHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--hcHHH
Q 006981 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEK 460 (623)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~--~~~~~ 460 (623)
+.+.|++++|...|+++... .|+...+..+..++.+.|+.++|...+++..+.. |+.. .+..+...+. +++++
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHH
Confidence 45777788888777776543 4454555566667777788888887777777643 3332 2222222221 25666
Q ss_pred HHHhhHhhhhccCCCccchhhhh------------HHHHHHHHHHHHcCCCCcHHHHHHHHhccC--CCCchhHHHhHHH
Q 006981 461 ARTLNEHVLSFNSGRPQIENKWT------------SLALMVYREAIVAGTIPTVEVVSKVLGCLQ--LPYNADIRERLVE 526 (623)
Q Consensus 461 a~~~~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~--~~~~~~~~~~~~~ 526 (623)
|....+.....++. ...|. ..|...|++.++ ..|+.......+|... .+...+....+.+
T Consensus 595 Al~~~~~AL~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 595 ALNDLTRSLNIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66665544433331 12222 236666666554 5687776665555332 3444555556666
Q ss_pred hhCCChh-hhhcccccccccccCCChhHHHHHHHHHHhCCCCCccc
Q 006981 527 NLGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571 (623)
Q Consensus 527 ~~~~~~~-~~~~~~~~~~i~~~g~~~~~A~~~~~~a~~~g~~p~~~ 571 (623)
.+.+.|+ +....++.......|+ .++|...++++.+ +.|+..
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~--l~P~~a 711 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDD-MAATQHYARLVID--DIDNQA 711 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh--cCCCCc
Confidence 6666774 3333344445555675 4678888888887 667543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-13 Score=146.55 Aligned_cols=475 Identities=9% Similarity=0.011 Sum_probs=248.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH--------HhhhHHHHHHHHHhhhCC-CCCHHHHHHH-HHHHHcCCCh
Q 006981 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNV--------CKSQKAIKEAFRFFKLVP-NPTLSTFNML-MSVCASSKDS 108 (623)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~-~~~~~~~~~l-i~~~~~~~~~ 108 (623)
+++.+|.++++++.+.. |.+..+...+... +.+.++..+|+. .+... .|+..+.... .+.|.+.+++
T Consensus 122 ~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred ccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 44444444444444444 3333333333333 344444455555 22222 2234434444 7889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
++|+.++..+.+.+ +.+..-...|..+|.. .++ +.+..+++.. +..+...+..+...|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999987 5556667778888888 477 8888886542 246888999999999999999999999998
Q ss_pred HHhCCCC-CCHHHHHHH------------------------------HHHHHccCCHHHHHHHHH---------------
Q 006981 188 MRSKNVK-PDRVVFNAL------------------------------ITACGQSGAVDRAFDVLA--------------- 221 (623)
Q Consensus 188 m~~~g~~-p~~~~~~~l------------------------------i~~~~~~g~~~~A~~~~~--------------- 221 (623)
+...-.. |+..+|.-+ +.-+.+.++++.+.++..
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS 352 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence 7643211 333332211 222334444444433321
Q ss_pred --------------HHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCC-
Q 006981 222 --------------EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY--NIKGTPEVYTIAINCCSQTGD- 284 (623)
Q Consensus 222 --------------~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~- 284 (623)
.|.+. .+-+....--+.-...+.|+.++|.++|+..... +...+....+-++..|...+.
T Consensus 353 ~~~~~~~~~~~~~~~~y~~---~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQ---EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred cccCchhHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 11110 0112222222223345667777777777666542 112233444455555555443
Q ss_pred --HHHH----------------------HHHHHHHHhC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006981 285 --WEFA----------------------CSVYDDMTKK-GV-IP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (623)
Q Consensus 285 --~~~A----------------------~~l~~~m~~~-~~-~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (623)
..++ .......... +. .+ +...|..+..++.. ++.++|...+.+.....
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-- 506 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-- 506 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--
Confidence 1122 1112222221 11 12 34444545544444 56666666555555442
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (623)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (623)
|+......+...+.+.|++++|...|+++... .|+...+..+...+.+.|+.++|...+++..+.. +++...+..+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 33333333333345666666666666665443 2333445555556666666666666666666542 11222232333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHhhHhhhhccCCCccc---------hhhhhHH
Q 006981 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI---------ENKWTSL 485 (623)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~ 485 (623)
..+...|++++|...+++.++ ..|+...+..+..++.+ ++++|....+.....++..+.. ..+....
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 334445666666666666665 34555555555444443 4555555444433333322210 0112234
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHhccC--CCCchhHHHhHHHhhCCChhhh
Q 006981 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQ--LPYNADIRERLVENLGVSADAL 535 (623)
Q Consensus 486 a~~~~~~m~~~g~~p~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~ 535 (623)
|+..|++.++ ..|+...+..-+|.+. .+.-.+....+.+.+.+.|+..
T Consensus 662 Ai~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 662 SREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 6666666655 4677665544444333 3444455556666776777543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-12 Score=138.79 Aligned_cols=416 Identities=10% Similarity=0.057 Sum_probs=287.5
Q ss_pred HHHhhhHHHHHHHHHhhhCC--CCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 006981 69 NVCKSQKAIKEAFRFFKLVP--NPTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (623)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (623)
-...+.|+++.|+..|++.. .|+. .....++..+...|+.++|+..+++..... +........+...+...|++++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34556788999999999876 3332 123388888889999999999999988221 2334444445678889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++..
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999875 345677788889999999999999999999876 56666664454445456666679999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHH------HHHHHHH-----HhcCCH---HHHHHH
Q 006981 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY------TIAINCC-----SQTGDW---EFACSV 291 (623)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~~-----~~~g~~---~~A~~l 291 (623)
.. +.+...+..+..+..+.|-...|.++.+.-++.= .+....+ ..++..- ...+++ +.|+.-
T Consensus 198 ~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 198 LA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred hC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 52 3356677888899999999999988776544221 1111111 1111100 112333 344555
Q ss_pred HHHHHhC-CCCCCH-HH-HH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 292 YDDMTKK-GVIPDE-VF-LS---ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 292 ~~~m~~~-~~~p~~-~~-~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
++.+... +..|.. .. .. -.+-++...|++.++++.++.+...+.+....+-..+.++|...+..++|..+++++
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 5555542 222322 11 12 233467788999999999999999887766778899999999999999999999998
Q ss_pred HhCC-----CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC-------------CCCCHHH-HHHHHHHHHhcCCHH
Q 006981 366 KSIK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-------------LCPNTIT-YSILLVACERKDDVE 426 (623)
Q Consensus 366 ~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~g~~~ 426 (623)
.... ..++......|.-+|...+++++|..+++++.+.- ..||-.. +..++..+...|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 6643 12344556789999999999999999999998731 1233333 444567788999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHhhHhhhhccCCCcc--chhhhhHHHHHHHHHH
Q 006981 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ--IENKWTSLALMVYREA 493 (623)
Q Consensus 427 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~m 493 (623)
+|++.++.+.... .-|......+-+.+.. ...+|....+......+.... ...+++.+++.=|+++
T Consensus 434 ~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 434 TAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 9999999998642 2355555566665553 688888888766655554221 2234444444444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-12 Score=133.31 Aligned_cols=427 Identities=13% Similarity=0.077 Sum_probs=253.4
Q ss_pred ccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHH--H
Q 006981 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLST--F 95 (623)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~--~ 95 (623)
+++++..-....|.+.-.|++..+..+.+.+....... .-..-+..+++.+-..|++++|..+|-+.. .++.++ +
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 45666777777788888999999999999888765211 112225566777888899999999997654 333333 4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 96 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
--+...+...|+++.+...|+...+.. +.+..+...|...|+..+ ..+.|..+..+..+.- +.|...|-.+...
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 446788999999999999999998864 555677777777777775 4566777777766653 4567788777777
Q ss_pred HHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCCCCH------HHHHHH
Q 006981 172 CAKAGQVAKAFGAYGIM----RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDH------ITIGAL 240 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~------~~~~~l 240 (623)
+-.. +...++..|... ...+-++.+...|.+...+...|++++|...|......-. ...+|. .+--.+
T Consensus 424 ~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 6654 444446666544 3455567788889999889999999999999888765300 112222 122334
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (623)
...+-..++.+.|.+.|..+.+.. +.-+..|--+..+-...+...+|...+.+....+-. +...++.+...+.....+
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhh
Confidence 445555667777777777776653 222333433433333345556666666665543221 333333333344444445
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 006981 321 EAAFEILQEAKNQG-ISVGIISYSSLMGACSN------------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (623)
Q Consensus 321 ~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (623)
..|.+-|..+.+.- ..+|..+.-+|.+.|.+ .+..++|+++|.+..+.. +.|...-|.+...++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhc
Confidence 55555444433321 12344444444443332 233455555555555443 23455555555555666
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 006981 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 388 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~ 454 (623)
|++.+|..+|.+..+... -+..+|..+...|...|++-.|++.|+...+ ..-.-+..+.++|-.++
T Consensus 660 g~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred cCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 666666666666555421 2333455555556666666666666655443 23333444444444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-11 Score=116.47 Aligned_cols=314 Identities=21% Similarity=0.264 Sum_probs=235.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHH-HHHHHHHHHCC----------
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAM-FEVFHEMVNAG---------- 157 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A-~~~~~~m~~~g---------- 157 (623)
.+++=|.|+.. ..+|.+..+.-+++.|...|++.+...-..|+..-+-.+ ++--| .+.|-.|...|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34566666665 446889999999999999998888777666665433222 11111 12222222211
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 006981 158 ---------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (623)
Q Consensus 158 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (623)
.+.+..++.+||.+.|+-...+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|...
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq-- 267 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ-- 267 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh--
Confidence 245778999999999999999999999999998878899999999998765433 36788889875
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHH----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CC
Q 006981 229 PVDPDHITIGALMKACANAGQVDRA----REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK----KG 299 (623)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~~ 299 (623)
.+.||..|+|+++++.++.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++.. +.
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 6899999999999999999987654 5677899999999999999999999998887744 5555555543 22
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 300 VIP----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI 368 (623)
Q Consensus 300 ~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (623)
++| |...|.+.++.|.+..+.+.|.++..-+.... +.|+ ..-|..+....++....+.-...++.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 332 55678889999999999999999988765431 2233 234667778888888899999999999866
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHH
Q 006981 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (623)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 411 (623)
-.-|+..+...++++....|.++-.-+++.+++..|..-+...
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 6667888888888888888888888888888887664333333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-12 Score=131.42 Aligned_cols=404 Identities=13% Similarity=0.111 Sum_probs=305.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCc-hHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCC----Ch
Q 006981 37 RQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK----DS 108 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~----~~ 108 (623)
..|+++.|...|.+..+.+ +.+ ..-+.-+++.+...|+++.|...|+.+. +.+..+...+...|+..+ ..
T Consensus 319 a~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred hhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH
Confidence 6899999999999988876 444 4445567778888999999999999864 456667777777777765 45
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV----NAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (623)
+.|..++....+.- +.|...|..+...+-... ...++.+|.... ..+-.+-....|.+...+...|++++|...
T Consensus 397 d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 67777777776654 567788888887775554 444476665543 455567788899999999999999999999
Q ss_pred HHHHHhC---CCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHH-HHHHHHHHHHHcCChHHHH
Q 006981 185 YGIMRSK---NVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI-TIGALMKACANAGQVDRAR 254 (623)
Q Consensus 185 ~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~ 254 (623)
|...... -..+|. .+--.+.+..-..++.+.|.+.|..+... .|.-+ .|--+..+....+...+|.
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke----hp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE----HPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----CchhHHHHHHhhHHHHhccCcHHHH
Confidence 9988765 122333 22233555666678999999999999875 35432 3333333333457788999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCCHH
Q 006981 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGH------------AGKVE 321 (623)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~ 321 (623)
..++.....+ ..++.+++.+...+.+...+..|.+-|....+. ...+|..+.-+|...|.+ .+..+
T Consensus 551 ~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~ 629 (1018)
T KOG2002|consen 551 LLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQE 629 (1018)
T ss_pred HHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHH
Confidence 9999998876 677889999999999999999999977776653 233687777777776654 24577
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 006981 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (623)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (623)
+|+++|.++.+.. +-|...-|.+.-.++..|++.+|..+|.+..+... .+..+|-.+.++|...|++..|+++|+...
T Consensus 630 KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 630 KALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998876 56788888899999999999999999999997653 345678889999999999999999999865
Q ss_pred H-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 402 S-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (623)
Q Consensus 402 ~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (623)
+ .+-.-+......|..++.+.|.+.+|.+........-..-....+|..+
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 4 4434577788889999999999999999998887643333334455444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.7e-13 Score=124.62 Aligned_cols=409 Identities=14% Similarity=0.198 Sum_probs=273.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC----CCC----CHHHHHHHHHHHHcCCCh
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP----TLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~----~~~~~~~li~~~~~~~~~ 108 (623)
-+....+|+..++-+.+...+|..-.+...++..+.+.+.+.+|+++|+.. |.- .+...|.+.-.+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 355678888888888887777666666666677777788899999998654 322 223455555567889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC------------CCHHHHHHHH-----HH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE------------PNVHTYGALI-----DG 171 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------~~~~~~~~li-----~~ 171 (623)
+.|+.-|+...+. .|+..+-..|+-++...|+-++..+.|.+|+..... |+....|--| .-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999988775 577766555666677788999999999998764322 2333333222 22
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHH---H----------H--------HHHHHHHccCCHHHHHHHHHHHhhCCC
Q 006981 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV---F----------N--------ALITACGQSGAVDRAFDVLAEMNAEVH 228 (623)
Q Consensus 172 ~~~~g--~~~~A~~~~~~m~~~g~~p~~~~---~----------~--------~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (623)
.-+.. +.++++-.-.+++.--+.||-.. | . .-..-+.+.|+++.|.+++.-+.++..
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22211 12233322222322222333211 0 0 011236788999988888877655321
Q ss_pred CCCCCHHHHHHHH--H----------------------------------HHHHcCChHHHHHHHHHHHhcCCCCCHHHH
Q 006981 229 PVDPDHITIGALM--K----------------------------------ACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (623)
Q Consensus 229 ~~~~~~~~~~~ll--~----------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (623)
... ...-+.|. . .....|++++|.+.+++....+..-....|
T Consensus 451 k~~--saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf 528 (840)
T KOG2003|consen 451 KTA--SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF 528 (840)
T ss_pred hhh--HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH
Confidence 111 01111110 0 111347888888888888776532222233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006981 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (623)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (623)
| +.-.+-..|+.++|++.|-++...- .-+...+.-+...|....+..+|++++-+.... ++.|+.+.+.|.+.|-+.
T Consensus 529 n-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 529 N-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred H-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 3 3334667899999999988765421 125667777888888889999999988776554 567889999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHH
Q 006981 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKDDVEVGLML 431 (623)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~ 431 (623)
|+-..|.+.+-.--+. ++-|..+..-|..-|....-+++|+.+|++..- +.|+..-|..++..|. +.|+++.|..+
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999998876554332 345777777777788888889999999998765 6899999999987765 58999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 432 LSQAKEDGVIPNLVMFKCIIGMCSR 456 (623)
Q Consensus 432 ~~~~~~~g~~p~~~~~~~li~~~~~ 456 (623)
++...+. +..|......|+..|+.
T Consensus 683 yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhcc
Confidence 9988753 66788888888887654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-11 Score=121.52 Aligned_cols=367 Identities=13% Similarity=0.138 Sum_probs=277.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCC
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSK 106 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~ 106 (623)
.-.|.+.-.|++++|..++.+..+.+ |.+...+..++..+.+.|+.+++...+-.+ .+.|...|-.+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 34566667799999999999999998 778888888999999999999999987654 3667789999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHH
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY----GALIDGCAKAGQVAKAF 182 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~~A~ 182 (623)
.+++|.-.|.+..+.. +++...+---...|-+.|+...|..-|.++.+...+.|..-. -..+..+...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999886 556555556778899999999999999999987422222222 23455666778889999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC-------------------------CCCCCCCHHH
Q 006981 183 GAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVDPDHIT 236 (623)
Q Consensus 183 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------------~~~~~~~~~~ 236 (623)
+.++..... +-..+...++.++..+.+...++.|......+... +.+..++..+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 999888763 22345567888888899999999988887776551 1112233333
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYN--IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 314 (623)
+ -++-++.+....+....+.....+.+ +..+...|.-+..+|...|++.+|+++|..+......-+...|-.+..+|
T Consensus 381 ~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 I-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred H-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1 12223445555555666666666666 34456789999999999999999999999999876655788899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHc
Q 006981 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALITALCD 386 (623)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~~~~ 386 (623)
-..|..++|.+.+..+.... +.+...--+|-..+.+.|+.++|.+.+..+.. .+..|+...--.....|.+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 99999999999999998874 44566667788889999999999999999652 2233444444455667778
Q ss_pred CCChhhHHHHHHHHH
Q 006981 387 GDQLPKTMEVLSDMK 401 (623)
Q Consensus 387 ~g~~~~A~~l~~~m~ 401 (623)
.|+.++=+..-..|+
T Consensus 539 ~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 539 VGKREEFINTASTLV 553 (895)
T ss_pred hhhHHHHHHHHHHHH
Confidence 888777655555553
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-10 Score=110.27 Aligned_cols=258 Identities=15% Similarity=0.046 Sum_probs=121.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (623)
.++-...+.+++++-.+.....|++-+...-+....+.-...++++|..+|+++.+..+=--.|..+|+.++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444445555555555555555444433333333444444555555555555554321111234444444422111111
Q ss_pred hH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 250 VD-RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (623)
Q Consensus 250 ~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (623)
+. .|..+++ +. +--+.|...+.+.|+-.++.++|...|++.++.+.. ....|+.+..-|....+...|.+-++
T Consensus 315 Ls~LA~~v~~-id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVSN-ID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHH-hc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 1111111 11 111244445555555555555555555555554332 33445555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC
Q 006981 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (623)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (623)
...+-+ +.|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|......| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 555543 3345555555555555555555555555555433 2345555555555555555555555555555433 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 409 TITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
...+..|...+-+.++.++|.+.|++-+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455555555555555555555555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=138.78 Aligned_cols=257 Identities=18% Similarity=0.171 Sum_probs=61.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 100 SVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (623)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (623)
..+.+.|++++|++++....... .+.|...|..+...+...++.+.|.+.++++...+ +-+...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccccc
Confidence 34444455555555553322221 12223333333344444455555555555554443 1133334444444 345555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006981 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (623)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (623)
++|.+++.+..+. .++...+...+..+.+.++++++.++++.+... ...+.+...|..+...+.+.|+.++|.+.++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555444332 233344444444455555555555555554332 1223344444444455555555555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006981 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (623)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (623)
+..+.. |.+....+.++..+...|+.+++.+++....+.. ..|...+..+..++...|+.++|...++...+.. +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 555443 3344445555555555555555444444443332 1122334444444445555555555555444432 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 339 IISYSSLMGACSNAKNWQKALELYEH 364 (623)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (623)
+.+...+.+++.+.|+.++|.++.++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccc
Confidence 44444444455555555555444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-11 Score=123.34 Aligned_cols=291 Identities=10% Similarity=-0.035 Sum_probs=175.2
Q ss_pred hhHHHHHHHHHhhhCCC--CC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 006981 73 SQKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (623)
Q Consensus 73 ~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 149 (623)
..|+++.|.+.+.+... |+ ...+-....+..+.|+.+.|.+.+.+..+....++..........+...|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34667777777665442 22 2333344456667778888888887776543222223334456677777888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HccCCHHHHHHHHHHHhhC
Q 006981 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC---GQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~ 226 (623)
++.+.+.. +.+..++..+...+.+.|++++|.+.+..+.+.++.+.......-..++ ...+..+++.+.+..+...
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88877764 3456677777777888888888888888887775432222111111111 2222222223333333332
Q ss_pred CC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 227 VH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (623)
Q Consensus 227 ~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 303 (623)
.. ..+.+...+..+...+...|+.+.|.+++++..+.. +.+... ...........++.+.+.+.++...+.... |
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-K 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-C
Confidence 10 012356677777778888888888888888877754 222211 111222223346677777777776665322 3
Q ss_pred H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 304 E--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 304 ~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 45567777788888888888888854444446777777788888888888888888887753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-10 Score=119.53 Aligned_cols=359 Identities=14% Similarity=0.092 Sum_probs=269.8
Q ss_pred hhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 006981 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (623)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 149 (623)
..|+.++|.+++.++. +.+...|.+|...|-+.|+.+++...+-.+--.. +.|...|..+.....+.|.+++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3489999999998874 5677899999999999999999998876655443 66788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHccCCHHHHHHHHHHHhh
Q 006981 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA----LITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|..-+.. .++.+...++.+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999875 55655666667889999999999999999988743223333333 45556677778999999888776
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---------------------------CCCHHHHHHHHHH
Q 006981 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI---------------------------KGTPEVYTIAINC 278 (623)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~~li~~ 278 (623)
. .+-..+...++.++..+.+...++.|.........+.. .++..+. .+.-+
T Consensus 309 ~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 309 K-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred h-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 3 22344555778888889999999998888776665221 2222221 22333
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 279 CSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (623)
Q Consensus 279 ~~~~g~~~~A~~l~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (623)
+......+....+...+.... +.-+...|.-+..++.+.|++.+|+.+|..+......-+..+|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 444444444455555555555 333556788899999999999999999999998866667889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK--------SLGLCPNTITYSILLVACERKDDVEVG 428 (623)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~a~~~~g~~~~a 428 (623)
+|.+.|+...... +-+...-..|-..+-+.|+.++|++.+..+. ..+..|+..........+...|+.++=
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999998753 2345566677788999999999999999854 233556666666666778888888875
Q ss_pred HHHHHHHH
Q 006981 429 LMLLSQAK 436 (623)
Q Consensus 429 ~~~~~~~~ 436 (623)
..+-..|+
T Consensus 546 i~t~~~Lv 553 (895)
T KOG2076|consen 546 INTASTLV 553 (895)
T ss_pred HHHHHHHH
Confidence 55555554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-14 Score=137.07 Aligned_cols=259 Identities=17% Similarity=0.150 Sum_probs=90.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHcCC
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSK 106 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 106 (623)
...+.+.+.|++++|++++++.......+.+..+...++.++...++.+.|.+.++++.. .+...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 334556678888888888855443332245555555566666677777777777776652 234455566655 5677
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
++++|.++++...+. .+++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777666544 3455566667777777777777777777766432 2346666777777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006981 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (623)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 265 (623)
++..+.. +-|....+.++..+...|+.+++.+++....... +.|...+..+..+|...|+.++|..+|++..+.+
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 7777652 2246666777777777777777777776665431 2334456667777777777777777777776654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+.|+.+...+..++.+.|+.++|.++..+..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 5566777777777777777777777766543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-09 Score=102.91 Aligned_cols=415 Identities=13% Similarity=0.090 Sum_probs=291.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHH
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~ 113 (623)
.++++..|+++|++.+.-+ ..+..+....+..-.++..++.|..+|++.. |.-...|-..+-.--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4677888999999998766 3444444455556667788999999998753 3333456666666667899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 006981 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N 192 (623)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 192 (623)
+|++-.+. .|+...|++.|+.=.+...++.|..+|+...-. .|++.+|---...=.++|....|..+|+..... |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99988875 899999999999999999999999999998764 699999999998888999999999999888754 2
Q ss_pred C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCChHHHHHH--------HHHHH
Q 006981 193 V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREV--------YKMIH 261 (623)
Q Consensus 193 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~--------~~~~~ 261 (623)
- .-+...+.+...-=.++..++.|.-+|.-.... ++.+ ...|......--+.|+....... ++.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 0 111223333333334566788888888777653 2323 34455555444455654433332 23444
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-----HH---HhcCCHHHHHHHHHHHH
Q 006981 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALID-----FA---GHAGKVEAAFEILQEAK 331 (623)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~~~~~li~-----~~---~~~g~~~~a~~~~~~~~ 331 (623)
+.+ +.|-.+|--.+..-...|+.+...++|++.... ++|-. ..|..-|- ++ ....+.+.+.++++...
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444 566678888888888889999999999988765 33321 12221111 11 24578888999998887
Q ss_pred HCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC
Q 006981 332 NQGISVGIISYSSLMGAC----SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (623)
Q Consensus 332 ~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (623)
+. ++-...||.-+--+| .++.++..|.+++...+ |..|-..++-..|..-.+.+.+|...+++++.++.+ +-
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 73 444556666555455 46788899999888765 456888888888888888999999999999988854 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh--cHHHHHHhhH
Q 006981 408 NTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR--RYEKARTLNE 466 (623)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~--~~~~a~~~~~ 466 (623)
|..+|.-....-...|+.+.|..+|+.++.. .++.....|.+.|+-=.. .+++|..+.+
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 7788888888778889999999999988865 344455567777764211 3455554443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-11 Score=121.24 Aligned_cols=285 Identities=13% Similarity=0.046 Sum_probs=211.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAF 182 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 182 (623)
.|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 68888888877776554211 2333444455557889999999999888875 45543332 3366788889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH------HHHHHHHHHHHHcCChHHHHHH
Q 006981 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREV 256 (623)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~A~~~ 256 (623)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999988775 4456777888888999999999999998888752 223332 2344555555555666777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006981 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (623)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (623)
++.+.+.- +.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 77765543 567788889999999999999999999988875 344421 12333345588999999998888764 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 006981 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
-|......+...|.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56777888999999999999999999999875 58888888999999999999999999988654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-11 Score=120.38 Aligned_cols=283 Identities=9% Similarity=0.015 Sum_probs=218.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCCHHHH
Q 006981 140 SGKVDAMFEVFHEMVNAGIEPNVHT-YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN--ALITACGQSGAVDRA 216 (623)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A 216 (623)
.|+++.|.+......+.. ++... |........+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 22333 333345558899999999999999875 55554333 335678889999999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 006981 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~ 289 (623)
.+.++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 173 l~~l~~~~~~~---P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 173 RHGVDKLLEVA---PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999988642 445677888899999999999999999999988754322 23444555555556667777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (623)
Q Consensus 290 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (623)
++++.+.+.- ..+......+...+...|+.++|..++.+..+. +++.... ++.+....++.+++.+..+...+..
T Consensus 250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 7777765432 337778888999999999999999999998874 4454322 3334446699999999999888764
Q ss_pred CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
+-|...+.++...+.+.+++++|.+.|+.+.+. .|+..++..+..++.+.|+.++|.+++++...
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346677888999999999999999999999984 79999999999999999999999999988754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-09 Score=104.75 Aligned_cols=292 Identities=10% Similarity=0.042 Sum_probs=189.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCC
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--PDRVVFNALITACGQSGA 212 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~ 212 (623)
.++-.....+++.+-.......|++.+...-+....+.-...++++|+.+|+++.+...- -|..+|+.++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 444455566677776777777776655554444445555667788888888888776311 145666666533222111
Q ss_pred HH-HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 213 VD-RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (623)
Q Consensus 213 ~~-~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 291 (623)
+. -|..++. + ....|. |+..+.+-|+-.++.++|...|++..+.+ +....+|+.|.+-|....+...|.+-
T Consensus 315 Ls~LA~~v~~-i----dKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 315 LSYLAQNVSN-I----DKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHH-h----ccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 11 1222221 1 123443 66667777777788888888888888776 55667788888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006981 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (623)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 371 (623)
++...+-... |-..|-.+.++|.-.+...-|+-.|++..+-. +.|...|.+|..+|.+.++.++|.+.|.+....| .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 8887776543 77778888888888888888888888777654 4577788888888888888888888888777655 2
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHH----CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTIT--YSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
-+...+..|...|-+.++..+|...|.+-++ .|..-+... ..-|..-+.+.+++++|..+.....+
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 3556777788888888888888777776544 232222111 11233445666777776665554443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-10 Score=118.50 Aligned_cols=286 Identities=12% Similarity=0.002 Sum_probs=144.2
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 006981 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVA 179 (623)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~ 179 (623)
...|+++.|.+.+....+.. |+ ...+-....++.+.|+.+.|.+.+.+..+. .|+. ...-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 34677777777777666543 33 333444456666777777777777776654 2332 23333466667777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHH-HHH---HHHHcCChHHHHH
Q 006981 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA-LMK---ACANAGQVDRARE 255 (623)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~-ll~---~~~~~g~~~~A~~ 255 (623)
.|...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+ . .+...+.. -.. .....+..+.+..
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--L-FDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 7777777777664 3355566677777777777777777777776542 1 12222211 011 1112222222222
Q ss_pred HHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHH--HHhcCCHHHHHHHHHH
Q 006981 256 VYKMIHKYNI---KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS-ALIDF--AGHAGKVEAAFEILQE 329 (623)
Q Consensus 256 ~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~-~li~~--~~~~g~~~~a~~~~~~ 329 (623)
.+..+.+... +.++..+..+...+...|+.++|.+++++..+... |..... .++.. ....++.+.+.+.++.
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 3333332211 13556666666666666777777776666666532 221100 01111 1122444444444444
Q ss_pred HHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 006981 330 AKNQGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (623)
Q Consensus 330 ~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (623)
..+.. +-|. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 325 ~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 325 QAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43331 1122 333444444555555555555555222211234444444445555555555555555444
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-08 Score=101.60 Aligned_cols=416 Identities=13% Similarity=0.092 Sum_probs=330.4
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhh---hCCCCCHHHHHHHHH
Q 006981 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMS 100 (623)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~li~ 100 (623)
.++.++..|..-+.....++|+-++.+..+-= |.+...... +.+..-++.|.+++. +..+.+...|.+-..
T Consensus 375 ~iP~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 375 HIPRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred hCCchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 45778899999999999999999999988753 444333322 334455667777665 456788999999888
Q ss_pred HHHcCCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 006981 101 VCASSKDSEGAFQVLRLV----QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAK 174 (623)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 174 (623)
.--.+|+.+....+..+- ...|+.-+...|..=...|-..|.+-.+..+....+..|++- -..||+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 888899999988887654 457888899999999999999999999999999988887653 35689999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 006981 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (623)
.+.++-|..+|...++. .+.+...|......--..|..+....+|.+.... ++.....|......+-..|++..|+
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 99999999999998876 3556778887777777789999999999998864 3444556667778888899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
.++..+.+.+ +.+...|-+-+.....+..++.|..+|.+.... .|+...|..-+..---.+..++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 9999998886 568889999999999999999999999988775 456666666666666678999999999888876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 006981 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (623)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 414 (623)
++.-...|..+.+.+-+.++++.|...|..-.+. ++-.+..|-.|...--+.|++-+|..+|++..-.+ +-|...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 3444667888889999999999999988765543 23345678888888888899999999999987764 347888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (623)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (623)
.|..-.+.|+.+.|..+..+.++. +..+-..|..-|-+..+
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 999999999999999998888753 44455567666666543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.9e-08 Score=95.78 Aligned_cols=366 Identities=15% Similarity=0.101 Sum_probs=239.5
Q ss_pred HHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006981 75 KAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (623)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 151 (623)
...++|+-++.+.. +.+...|.++ ++..-++.|..++....+. ++-+...|.+-...=-..|+.+...++.+
T Consensus 390 E~~~darilL~rAveccp~s~dLwlAl----arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQSMDLWLAL----ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred cChHHHHHHHHHHHHhccchHHHHHHH----HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34455666666543 3444455443 3444567777777777654 56667777766666667777777766665
Q ss_pred H----HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 152 E----MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 152 ~----m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
+ +...|+..+...|-.=...|-+.|..-.+..+....+..|+.-. ..||+.-...|.+.+.++-|..+|....+
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 4 33457777777777777777777777777777777766665432 35677777777777777777777777665
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006981 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (623)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 305 (623)
. ++.+...|......--..|..+.-..+|+++...- +.....|-....-+-..|+...|..++....+.... +..
T Consensus 545 v---fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 545 V---FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred h---ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 3 34455566666555556677777777777776653 445566666677777777777777777777766443 556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 006981 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITAL 384 (623)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~ 384 (623)
.|-+.+..-..+..++.|..+|.+.... .|+..+|.--+...--.++.++|.+++++..+. .|+- ..|..+.+.+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIE 695 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHH
Confidence 6777777777777777777777776653 456666666666666677777777777776654 3443 4566666777
Q ss_pred HcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (623)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (623)
-+.++.+.|.+.|..-.+. ++-....|..+...--+.|.+-.|+.++++....+ .-+...|-..|.+=.|
T Consensus 696 e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELR 765 (913)
T ss_pred HHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHH
Confidence 7777777777777654442 22234556666666667777777777777766432 2345566666766544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-10 Score=109.75 Aligned_cols=420 Identities=16% Similarity=0.190 Sum_probs=264.3
Q ss_pred hcCCHHHHHHHHHHHHH-----------cCCC-----CCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC----CCHH-HH
Q 006981 37 RQGRISECIDLLEDMER-----------KGLL-----DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS-TF 95 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~-----------~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~ 95 (623)
.+|++.+|++--.+.-+ .|.+ ..+..+...+..-+..+....+|+.-|+-+.. ||.- .-
T Consensus 161 ~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lk 240 (840)
T KOG2003|consen 161 ECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILK 240 (840)
T ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceee
Confidence 68888888775544322 1211 11222333444555566677888888876542 2221 22
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 96 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
-.+...+.+...+.+|+..++..+..-...+ ....+.+.-.+.+.|.++.|+.-|+...+. .||..+-..|+-+
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIIC 318 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhh
Confidence 2345667888899999999988876522222 224455555677899999999999998876 6888776667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC------------CCHHHHHHHHH-----HHHccCC--HHHHHHHHHHHhhCCCCCCC
Q 006981 172 CAKAGQVAKAFGAYGIMRSKNVK------------PDRVVFNALIT-----ACGQSGA--VDRAFDVLAEMNAEVHPVDP 232 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~------------p~~~~~~~li~-----~~~~~g~--~~~A~~~~~~m~~~~~~~~~ 232 (623)
+..-|+.++..+.|.+|+..-.. |+....+.-|. -.-+... -+++.-.-..+.. .-+.|
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi~~ 396 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVIAP 396 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--ccccc
Confidence 77789999999999999764322 33333332221 1111111 1222222122221 12233
Q ss_pred CHHH---H----------H--------HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH-------------
Q 006981 233 DHIT---I----------G--------ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC------------- 278 (623)
Q Consensus 233 ~~~~---~----------~--------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~------------- 278 (623)
|-.. | . .-...+.+.|+++.|.++++-..+.+-+.-...-+.|-..
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 3110 0 0 1122478999999999999888765432221221111111
Q ss_pred -----------------------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 279 -----------------------CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (623)
Q Consensus 279 -----------------------~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (623)
-..+|++++|.+.+++.+..+..-....|+ +.-.+-..|++++|++.|-.+... +
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l 554 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-L 554 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-H
Confidence 113477888888888887763321222233 222456778899998888776443 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (623)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (623)
..+..+...+.+.|.-..+...|.+++.+.... ++.|+...+-|...|-+.|+-..|++..-+--+. ++-|..|..-|
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl 632 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWL 632 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHH
Confidence 235677778888888888888898888777543 3456777888888999999998888876554332 45577787777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cHHHHHHhhH
Q 006981 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR---RYEKARTLNE 466 (623)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~---~~~~a~~~~~ 466 (623)
..-|....-+++++.+|++..- +.|+..-|..||..|.| +|.+|..+.+
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 7778888888899999987654 78999999999988876 5666655543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-10 Score=104.15 Aligned_cols=284 Identities=17% Similarity=0.171 Sum_probs=164.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 006981 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (623)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 117 (623)
+.+.+.|.++|-+|.+.+ +.+...|..++.++.+.|.+|.|+ ++++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAI-------------------------------RiHQ~ 94 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAI-------------------------------RIHQT 94 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHH-------------------------------HHHHH
Confidence 445556666666666544 444445555555555555555554 44444
Q ss_pred HHHcCCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 118 VQEAGLKAD------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 118 m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+.++ || ....-.|..-|-..|-+|.|.++|..+.+.| +--......|+..|-...+|++|+++-+++.+.
T Consensus 95 L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~ 170 (389)
T COG2956 95 LLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL 170 (389)
T ss_pred HhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 4432 21 1123345556667777888888887777643 233456677788888888888888888777766
Q ss_pred CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 006981 192 NVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (623)
Q Consensus 192 g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 266 (623)
+-++.. ..|.-|...+....+++.|..++.+..+. .|+ +..--.+.+.....|+++.|.+.++.+.+.+..
T Consensus 171 ~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa----~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 171 GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA----DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh----CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 533332 22444455555567777888888777654 233 223334556777778888888888888777655
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (623)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (623)
.-+.+...|..+|.+.|+.++....+..+.+....++.. ..+-..-....-.+.|..++.+-.+. +|+...+..|+
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~ 322 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLM 322 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHH
Confidence 455667777778888888888777777776654333322 22222222233344444444443333 46666666666
Q ss_pred HHHHh---cCCHHHHHHHHHHHH
Q 006981 347 GACSN---AKNWQKALELYEHMK 366 (623)
Q Consensus 347 ~~~~~---~g~~~~A~~~~~~m~ 366 (623)
+.-.. .|...+...+++.|.
T Consensus 323 ~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 323 DYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HhhhccccccchhhhHHHHHHHH
Confidence 65432 233444445555554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-09 Score=99.93 Aligned_cols=289 Identities=12% Similarity=0.076 Sum_probs=144.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCH
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAKAGQV 178 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~ 178 (623)
+++.++|..+|-+|.+.. +.+..+.-+|.+.|.+.|.+|.|++++..+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456777777777777643 344556667777777777777777777777753 332 2334455556667777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006981 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (623)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (623)
+.|.++|..+...| .--......|+..|-...++++|.++-.++... .++ .++.-|
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~----~~q--~~~~eI----------------- 179 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL----GGQ--TYRVEI----------------- 179 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----CCc--cchhHH-----------------
Confidence 77777777766543 223345556666666666777766666655442 111 111110
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006981 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (623)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (623)
...|.-+...+....+.+.|..++.+..+.+.+ .+..--.+.+.....|+++.|.+.++.+.+++...-
T Consensus 180 ----------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 180 ----------AQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred ----------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 012233333333344444444444444443221 111112233344445555555555555555443333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (623)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 418 (623)
..+...|..+|.+.|+.++....+.++.+.. ++...-..+...-....-.+.|...+.+-+.. +|+...+..++..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 4445555555555555555555555554432 22222233333333333344444444433332 4666666666654
Q ss_pred HHh---cCCHHHHHHHHHHHH
Q 006981 419 CER---KDDVEVGLMLLSQAK 436 (623)
Q Consensus 419 ~~~---~g~~~~a~~~~~~~~ 436 (623)
-.. .|...+....++.|+
T Consensus 325 ~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 325 HLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred hhccccccchhhhHHHHHHHH
Confidence 322 233444444555554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-11 Score=117.42 Aligned_cols=283 Identities=14% Similarity=0.082 Sum_probs=193.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHH-HHHH
Q 006981 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGAVD-RAFD 218 (623)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~-~A~~ 218 (623)
+..+|...|..+... +.-+..+...+..+|...+++++|.++|+.+++... --+...|.+.+--+-+.-.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 456778888775544 222345566777788888888888888888776420 114456666654433221111 1222
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
+.+.. +-...+|.++.++|+-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 413 Li~~~-------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 413 LIDTD-------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHhhC-------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22221 2234588888888888888888888888887765 446678888888888888888888888877665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006981 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (623)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (623)
... +-..|.-+...|.+.++++.|+-.|+...+-+ +.+.+....+...+-+.|+.++|++++++...... .|+.+--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHH
Confidence 332 34456667777888888888888888887765 44566667777778888888888888888776553 3555555
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
..+..+...+++++|+..++++++ +.|+ ...|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 566777778888888888888887 4565 445666677888888888888888777664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.6e-11 Score=117.96 Aligned_cols=261 Identities=11% Similarity=0.008 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006981 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (623)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 256 (623)
+..+|+..|.++... +.-+..+...+.++|...+++++|.++|+.+.+...-..-+...|++.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 346677777775443 222234445566777777777777777777766432223345666666533221 112222
Q ss_pred H-HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 257 Y-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (623)
Q Consensus 257 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (623)
+ +.+.+.+ +..+.+|-++.++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+......
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 2233332 455677777777777777777777777777765432 55667777666777777777777777665432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (623)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (623)
+-+...|..|.-.|.|.++++.|.-.|+...+.+ +.+.+....+...+.+.|+.++|+++++++.... +-|...--.-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 1122333445566777777777777777777655 2355666666677777777777777777776532 1144443344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006981 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449 (623)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 449 (623)
...+...+++++|.+.++++++ +.|+..+--.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~ 595 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFA 595 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHH
Confidence 4556667777777777777776 4566554333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-09 Score=100.97 Aligned_cols=285 Identities=16% Similarity=0.133 Sum_probs=181.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (623)
.|++.+|..+..+-.+++ +-....|..-..+.-..|+.+.+-.++.+..+..-.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888888877776 3335566667777778888888888888887653355666777777778888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-------HHHHHHHHHHHHHcCChHHHHHHH
Q 006981 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------HITIGALMKACANAGQVDRAREVY 257 (623)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~A~~~~ 257 (623)
.+++.+.+ +.++.......++|.+.|++.....++..+.+.+ .-.| ..+|..+++-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88877765 4456677778888888888888888888887642 2222 234555555444444444444555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006981 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (623)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (623)
+..... .+.++..-.+++.-+.++|+.++|.++..+..+.+..|. ...++ .+.+-++.+.-.+..+.-.+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhC-CC
Confidence 555433 244455666666677777777777777777666655544 11111 2334455554444444433331 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 006981 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (623)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (623)
++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..+|.+.|+..+|.++.++..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3355666666666666666666666655543 4666666666666666666666666666654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-10 Score=116.29 Aligned_cols=250 Identities=16% Similarity=0.155 Sum_probs=142.0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006981 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194 (623)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 194 (623)
+..+...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+..+.++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 334444555555555555555555555555554 5555544444444555555555555555544443 3
Q ss_pred CCHHHHHHHHHHHHccCCHHH-----------------------HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChH
Q 006981 195 PDRVVFNALITACGQSGAVDR-----------------------AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (623)
Q Consensus 195 p~~~~~~~li~~~~~~g~~~~-----------------------A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (623)
|...||+.|..+|...||+.. -..++..+.- ..+.-||..+ .+......|-++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c-~p~~lpda~n---~illlv~eglwa 156 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHC-CPHSLPDAEN---AILLLVLEGLWA 156 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhccc-CcccchhHHH---HHHHHHHHHHHH
Confidence 444555555555555555322 2222221111 1223344322 233334455666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
.+.+++..++...... +... +++-+.... .+++-....+...+ .|+..+|..++..-..+|+.+.|..++.+|
T Consensus 157 qllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 6666665554322111 1111 133222222 22332222222222 478889999999888899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 006981 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (623)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (623)
.+.|++.+..-|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+.++|.
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999988888888888765 77888888888889999999999998887777777555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-07 Score=89.49 Aligned_cols=357 Identities=15% Similarity=0.103 Sum_probs=266.4
Q ss_pred hhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 006981 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (623)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 148 (623)
-+++++..|.++|++.. ..++..|-..+..-.++..+..|..++++....-...| ..|-.-+.+=-..|++..|.+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHH
Confidence 45678899999999875 56777888888899999999999999999987532222 345556666678899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 006981 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (623)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (623)
+|+...+- +|+...|++.|+.=.+.+.++.|..+|++..-. .|++.+|.-..+.=-++|....|..+|......-.
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99999876 899999999999999999999999999998864 79999999888888899999999999998876311
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHHhC
Q 006981 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSV--------YDDMTKK 298 (623)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l--------~~~m~~~ 298 (623)
.-.-+...+.+....-.++..++.|.-+|+-..+.- +.+ ...|..+...--+-|+.....+. ++.+.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 111223345555555567788999999999887763 333 34566666555556665433332 3344444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H-HHHHHH--------HHHHhcCCHHHHHHHHHHHHhC
Q 006981 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-I-SYSSLM--------GACSNAKNWQKALELYEHMKSI 368 (623)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~li--------~~~~~~g~~~~A~~~~~~m~~~ 368 (623)
+. -|-.+|--.+..-...|+.+...++++..+..- +|-. . .|.-.| -.-....+.+.+.++|+...+.
T Consensus 318 np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 NP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred CC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 33 266777777777778899999999999998763 4421 1 121111 1113578899999999988773
Q ss_pred CCCCCHHHHHHH----HHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 369 KLKPTVSTMNAL----ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (623)
Q Consensus 369 ~~~~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (623)
++....|+.-+ ..-..++.+...|.+++...+ |.-|-..+|...|..-.+.++++.+..++++.++.+
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 23344555443 334457888999999998877 568999999999999999999999999999999853
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-08 Score=97.16 Aligned_cols=389 Identities=11% Similarity=0.062 Sum_probs=227.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC--C-CHHHHHHHHHHHHcCCChH
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--P-TLSTFNMLMSVCASSKDSE 109 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~ 109 (623)
|...++|.+++|++.+.+.++.. |...+++......+...|++++..+.-.+... | -+..++.-.+++-..|++.
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 34458999999999999998876 55577777778888888999988887766543 2 2345555566777778877
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHh------------
Q 006981 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-AG--IEPNVHTYGALIDGCAK------------ 174 (623)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g--~~~~~~~~~~li~~~~~------------ 174 (623)
+|+.=..-..-.+---|..+--.+=+.+-+ .|....++-.+ .+ +-|+....++....+..
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 775433222111100111111101111111 11111111111 11 22333333332222211
Q ss_pred -------------cC---CHHHHHHHHHHHHhC-CCCCC-----------HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 006981 175 -------------AG---QVAKAFGAYGIMRSK-NVKPD-----------RVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 175 -------------~g---~~~~A~~~~~~m~~~-g~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (623)
.+ .+..|.+.+.+-... -..++ ..+.......+.-.|+...|.+-|+.....
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 122222222111100 00011 111111111233457777888888877753
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (623)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 306 (623)
. +.+...|--+..+|....+.++..+.|++..+.+ +.++.+|..-...+.-.+++++|..=|++.+..... +...
T Consensus 356 ~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 356 D---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred C---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 2 1122226666677888888888888888888877 667778888888888888888888888888776432 4445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHH--HH
Q 006981 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-----PTVSTM--NA 379 (623)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~~~--~~ 379 (623)
|.-+--+..+.+++++++..|++.++. ++..+.+|+.....+...+++++|.+.|+...+.... -+...+ -+
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 555555556778888888888888776 4566778888888888888888888888877654211 011111 11
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 380 LITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
++ .+.=.+++..|.+++++..+. .| ....|.+|...-.+.|+.++|+++|++...
T Consensus 510 ~l-~~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 510 LL-VLQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred Hh-hhchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 111237788888888888774 44 466788888888888888888888877653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-08 Score=94.94 Aligned_cols=285 Identities=12% Similarity=0.041 Sum_probs=202.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006981 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219 (623)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 219 (623)
.|++..|+++..+-.+.+ +.....|..-..+.-+.|+.+.+-+.+.+..+.--.++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888877765 3334556666677778888888888888887663345566666677778888888888888
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 006981 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFACSVY 292 (623)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~ 292 (623)
++++.... +.+..+......+|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+.-...+
T Consensus 176 v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88776542 345667777888888888888888888888888765543 34666666555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCC
Q 006981 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS-IKLK 371 (623)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~ 371 (623)
++..++ .+-+...-.+++.-+.+.|+.++|.++..+..+++..|+.. ..-.+.+.++...-.+..+.-.. .+.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC-
Confidence 555443 22345566677777888888888888888888877666521 22234566666666665554433 332
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
+...+.+|...|.+++.+.+|.+.|+...+ ..|+..+|..+..++.+.|+.++|.+..++...
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 346777888888888888888888887776 478888888888888888888888888877653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-12 Score=86.41 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (623)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (623)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-07 Score=93.80 Aligned_cols=409 Identities=17% Similarity=0.169 Sum_probs=212.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 006981 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ 113 (623)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 113 (623)
.++++|++..-+..|++.++.-.+.....+....++...+.+-.+-+.+++++-..-++..-+-.|..+++.+++++|.+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHH
Confidence 34588888888888888877654444444444555555555656666666666554444445556666666677766666
Q ss_pred HHHHHHHcC------CCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 006981 114 VLRLVQEAG------LKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVAKAF 182 (623)
Q Consensus 114 ~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~ 182 (623)
.+...+... .+.+...|..+-+..++.-+.-. ...+++.+... -+|. ..|++|.+-|.+.|.+++|.
T Consensus 191 ~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 191 RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 665554210 12233334444333333322111 11222222211 1221 24455555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH------------------------------------------------------
Q 006981 183 GAYGIMRSKNVKPDRVVFNALITACG------------------------------------------------------ 208 (623)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~------------------------------------------------------ 208 (623)
++|++....- .++.-|+.+.++|+
T Consensus 269 Dvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 269 DVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 5554443321 11222222222222
Q ss_pred ------------ccCCHHHHHHHHHHHhhCCCCCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--
Q 006981 209 ------------QSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-- 268 (623)
Q Consensus 209 ------------~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 268 (623)
..|+..+-...+.+..+. +.|- ...|..+.+.|-+.|+++.|..+|++..+-..+.-
T Consensus 347 ~nV~eW~kRV~l~e~~~~~~i~tyteAv~~---vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 347 HNVEEWHKRVKLYEGNAAEQINTYTEAVKT---VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred ccHHHHHhhhhhhcCChHHHHHHHHHHHHc---cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 123333444444444332 1221 23466667777777888888888877766543322
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 269 -PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----------P-------DEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 269 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~----------p-------~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
..+|-.-..+-.+..+++.|+++.++.....-. | +...|+..++.-...|-++....+++.+
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 235555556666677777777776665432111 1 1233444555555566777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc---CCChhhHHHHHHHHHHCCCC
Q 006981 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCD---GDQLPKTMEVLSDMKSLGLC 406 (623)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~ 406 (623)
.+..+.. +...-.....+.....++++.+++++-...-..|++ ..|+..+.-+.+ ....+.|..+|++.++ |.+
T Consensus 504 idLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cp 581 (835)
T KOG2047|consen 504 IDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCP 581 (835)
T ss_pred HHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCC
Confidence 7665432 222222222344555667777777765544334554 456666555443 3357888888888887 666
Q ss_pred CCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 006981 407 PNTITYSILL--VACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIG 452 (623)
Q Consensus 407 p~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~ 452 (623)
|...-+.-|+ ..--+.|....|+.+++++.. ++++. ...||..|.
T Consensus 582 p~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 582 PEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 6543322222 222345777778888877543 23333 234555553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-09 Score=100.99 Aligned_cols=199 Identities=16% Similarity=0.105 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3444555555555556666655555555432 2234455555555555555555555555555442 2233444455555
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (623)
+...|++++|.+.+.+..... ........+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 555555555555555554320 111122233444445555555555555555554443 223344445555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
+|...+++..... ..+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555544431 123333334444444445555554444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-09 Score=113.68 Aligned_cols=249 Identities=12% Similarity=-0.003 Sum_probs=178.0
Q ss_pred hHHHHHHHHHhhhCC---CCCHHHHHHHHHHHH---------cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006981 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (623)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~---------~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 141 (623)
.+++++|+.+|++.. +.+...|..+..++. ..+++++|...+++..+.. +.+...+..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 466889999998764 334556655554433 2345789999999999875 557888888888999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006981 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (623)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (623)
++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...+.
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999999875 445778888899999999999999999999887422 22333344555667899999999999
Q ss_pred HHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 006981 222 EMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-G 299 (623)
Q Consensus 222 ~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~ 299 (623)
+..... .|+ ...+..+..++...|+.++|...+.++.... +.+....+.+...|...| +.|...++.+.+. .
T Consensus 431 ~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 431 ELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 887531 243 4456677788889999999999998876553 334556677777777777 4777777776653 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
..|....+..+ .+.-.|+-+.+..+ +++.+.+
T Consensus 505 ~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 22322333333 34455676666666 7777664
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-08 Score=100.17 Aligned_cols=368 Identities=11% Similarity=0.061 Sum_probs=258.7
Q ss_pred hhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCChhHHH
Q 006981 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL----KADCKLYTTLITTCAKSGKVDAMF 147 (623)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~ 147 (623)
......++|...|.+....|+..|.++...-.. ..-.+.+.++.+..... ..+......+.....-...-+...
T Consensus 152 ~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~ 229 (611)
T KOG1173|consen 152 VALDNREEARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESL 229 (611)
T ss_pred hhhccHHHHHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccc
Confidence 344557788888887776777766665543322 12223333333332111 112222222222221011001111
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 006981 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (623)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (623)
..-.+-.-.+...+......-..-+-..+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++.+.
T Consensus 230 ~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~- 307 (611)
T KOG1173|consen 230 TRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL- 307 (611)
T ss_pred ccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-
Confidence 111111112334566666667777788999999999999998774 666777777788899999988877777777753
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-CCCH
Q 006981 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GV-IPDE 304 (623)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~-~p~~ 304 (623)
.+....+|-++.--|...|+..+|++.|.+....+ +.-...|-.+...|.-.|..+.|...+...-+. |. .|
T Consensus 308 --yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP-- 382 (611)
T KOG1173|consen 308 --YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP-- 382 (611)
T ss_pred --CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--
Confidence 34557789999988888999999999999987665 333468999999999999999999988776553 32 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC--CCHHHHH
Q 006981 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS----IKLK--PTVSTMN 378 (623)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~--~~~~~~~ 378 (623)
+--+.--|.+.+..+.|.+.|.+..... +.|+.+.+-+.....+.+.+.+|...|+.... .+.+ .-..+++
T Consensus 383 --~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 383 --SLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred --HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 2233445788999999999999988764 56788888888888889999999999987762 1111 1344678
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (623)
.|.++|.+.+.+++|+..+++.+.. .+-|..|++++.-.+...|+++.|...|.+.+. +.|+..+...++..+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 8899999999999999999998875 244888999999999999999999999998775 789998888887654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.1e-10 Score=113.27 Aligned_cols=253 Identities=18% Similarity=0.175 Sum_probs=181.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 006981 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (623)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (623)
.++-.+...|+.||.+||.++|.-||..|+.+.|- +|.-|..+..+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 9999988888888999999999999888876543
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHH----hcCCCCCHHHH---------------HHHHHHHHhcCCH
Q 006981 228 HPVDPDHITIGALMKACANAGQVDR---AREVYKMIH----KYNIKGTPEVY---------------TIAINCCSQTGDW 285 (623)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~----~~~~~~~~~~~---------------~~li~~~~~~g~~ 285 (623)
.|...+|..|..+|...||+.. ..+.+..+. ..|+ .....| ...+.-....|.+
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gv-gs~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGV-GSPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhcc-CcHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 4666799999999999999765 222111111 1121 111111 1223333444556
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 286 EFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (623)
Q Consensus 286 ~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (623)
+.+++++..+..... .|..+ ++.-+..... -..++........-.|+..+|..++++-...|+.+.|..++..
T Consensus 156 aqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 666666655543311 12111 2333332222 2223333222221258999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (623)
Q Consensus 365 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (623)
|.+.|++.+...|..|+-+ .+...-+..+++.|.+.|+.|+..|+...+..|...|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999998888888888777 78888888999999999999999999999888888665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=84.15 Aligned_cols=50 Identities=36% Similarity=0.658 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (623)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (623)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-09 Score=98.58 Aligned_cols=202 Identities=15% Similarity=0.056 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35677888889999999999999999998764 5567788889999999999999999999998765 446678888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSKNV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (623)
.+...|++++|.+.|++...... ......+..+...+...|++++|.+.+.+..... +.+...+..+...+...|+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID---PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCChHHHHHHHHHHHHcCC
Confidence 99999999999999999986532 2234567778888999999999999999987642 3345678888899999999
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
+++|...+++..+.. +.+...+..+...+...|+.++|..+.+.+...
T Consensus 185 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999988773 556777888889999999999999988877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-08 Score=109.07 Aligned_cols=249 Identities=13% Similarity=0.054 Sum_probs=136.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 006981 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK---------AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (623)
Q Consensus 143 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (623)
+++|.+.|++..+.. +.+...|..+..+|.. .+++++|...+++..+.. +-+...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 456777777766552 2233445444443331 233667777777776653 33455666666666677777
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (623)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 293 (623)
++|...|++..+.. +.+...+..+...+...|++++|...+++..+.+ +.+...+..++..+...|++++|...++
T Consensus 355 ~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 77777777766531 2234455666666777777777777777776664 2233333334444555677777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC
Q 006981 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKP 372 (623)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~ 372 (623)
+.......-+...+..+..++...|+.++|...+.++.... +.+....+.+...|.+.| ++|...++.+.+. ...+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 76654321133345555566667777777777776654432 223334444555556555 3566655555431 1122
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
....+..++ |.-.|+-+.+..+ +++.+.
T Consensus 508 ~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGLLPLV--LVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchHHHHH--HHHHhhhHHHHHH-HHhhcc
Confidence 222233333 3335555555444 666554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-08 Score=97.06 Aligned_cols=287 Identities=14% Similarity=0.052 Sum_probs=213.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006981 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (623)
Q Consensus 123 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 202 (623)
...+......-.+-+...+++.+..++++.+.+.. +++...+..-|.++.+.|+..+-..+=.+|.+. .+-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34566666667777778888999999988888764 566667777777888888888777777777765 2445778888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006981 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (623)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (623)
+.--|...|...+|++.|.+...-+..+ ...|-.....|+-.|..++|...+..+-+.= +....-+--+.--|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHh
Confidence 8888888899999999988876433223 2367778888888888888888887665531 11111122233457778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHH
Q 006981 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G--ISVGIISYSSLMGACSNAKNWQ 356 (623)
Q Consensus 283 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~ 356 (623)
++.+.|.+.|.+.....+. |+..++-+.-.....+.+.+|..+|+..... + ...-..+++.|.++|.+++.++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 8888999988887765332 5566666666666678888898888877622 1 0113456889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (623)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 419 (623)
+|+..|++..... +.+..++.++.-.|...|+++.|.+.|.+.+. +.||..+.+.++..+
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999988764 56889999999999999999999999999886 689998888888643
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-06 Score=86.08 Aligned_cols=397 Identities=14% Similarity=0.130 Sum_probs=245.1
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 006981 29 LHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (623)
Q Consensus 29 ~~~~~~l~---~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~ 102 (623)
...+...+ ..+++..-+.+.+.+.+.. |......++.+-.....|+.++|........ ..+.++|..+.-.+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 34455555 4678888888888888854 4555555555545555688899988887654 45778999999888
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (623)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (623)
....++++|+..++.....+ +-|...+.-+.-.-++.|+++-.......+.+.. +.....|..+..++.-.|+...|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999876 6677788877777788899988888877777653 335667888888899999999999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHH------HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHHcCChHHHH
Q 006981 183 GAYGIMRSKN-VKPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAR 254 (623)
Q Consensus 183 ~~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~ 254 (623)
.+.++..+.. -.|+...+.-.. ....+.|..++|.+.+..-... ..|... -..-...+.+.+++++|.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9999888764 246666554332 2345668888888877654321 223222 334556788899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHH----------------------------------HhCC
Q 006981 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC-SVYDDM----------------------------------TKKG 299 (623)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m----------------------------------~~~~ 299 (623)
.++..+..++ +.+..-|-.+..++.+-.+.-++. .+|... .+.|
T Consensus 240 ~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 240 KVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999998875 333333333444443222222222 333333 3333
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHH
Q 006981 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN----QG----------ISVGIISY--SSLMGACSNAKNWQKALELYE 363 (623)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~li~~~~~~g~~~~A~~~~~ 363 (623)
+.+ ++..+.+.|-.....+-..++...+.. .| -+|....| ..++..|-+.|+++.|....+
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 322 222222222211111111111111110 00 13333333 345556667777777777777
Q ss_pred HHHhCCCCCCH-HHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 364 HMKSIKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (623)
Q Consensus 364 ~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (623)
...++ .|+. ..|..-.+.+...|.+++|...+++..+.. .||...=+--..-..++.+.++|.++.....+.|.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 66654 3443 234444566667777777777777766543 34444433444444566777777777776666553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-07 Score=88.43 Aligned_cols=201 Identities=15% Similarity=0.129 Sum_probs=135.8
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (623)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (623)
+.-.|+.-.|..-|+...+.... +...|-.+...|....+.++-...|.+..+.+.. |..+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 34567888888888888877633 3334777777888888888888888888876553 445555555566666788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
..=|++.+... +-+...|-.+..+..+.+.++++...|++.++. ++.-+..|+.....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 88888887764 335566666666667888888888888887754 2344677888888888888888888888887652
Q ss_pred CCCCC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 006981 404 GLCPN-------TITY--SILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGM 453 (623)
Q Consensus 404 g~~p~-------~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~ 453 (623)
.|+ ..++ -.++ .+.-.+++..|.+++++.++ ++|.-. .|-+|-.+
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQF 546 (606)
T ss_pred --ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHH
Confidence 333 2221 1122 12234788888888888876 344332 34444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-07 Score=93.37 Aligned_cols=290 Identities=14% Similarity=0.139 Sum_probs=168.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHcc--
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITACGQS-- 210 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~-- 210 (623)
..+...|++++|++.++.-... -+| ..........+.+.|+.++|..+|..++..+ |+...|. .+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 3345556666666666554332 223 3334455556666666666666666666653 3333333 333333111
Q ss_pred ---CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 211 ---GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 211 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (623)
.+.+...++++++... -|......-+.-.+..-..+ ..+...+..+...|+| .+++.+-..|....+.+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 2345555666665442 12211111111111111112 2344445555666653 46666666666555555
Q ss_pred HHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKK----G----------VIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (623)
Q Consensus 287 ~A~~l~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (623)
-..+++...... + -.|.. .++..+...|...|++++|+++.+..+++. +..+..|..-...|-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 555555554321 1 12333 344556677788888999998888888874 333677788888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhc
Q 006981 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TY--SILLVACERK 422 (623)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------t~--~~ll~a~~~~ 422 (623)
+.|++++|.+.++...+... -|...-+-.+.-+.++|+.++|.+++....+.+..|-.. .| .....+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999888888887653 355566666777888899999988888887766544221 12 2334678889
Q ss_pred CCHHHHHHHHHHHHH
Q 006981 423 DDVEVGLMLLSQAKE 437 (623)
Q Consensus 423 g~~~~a~~~~~~~~~ 437 (623)
|++..|++-|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 998888887777654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.5e-09 Score=94.83 Aligned_cols=229 Identities=15% Similarity=0.012 Sum_probs=110.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006981 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (623)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (623)
+.+.++|.+.|.+.+|.+.|..-... .|-..||..|-++|.+..+++.|+.++.+-.+. ++.++....-+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 34445555555555555555444432 233334445555555555555555555554443 1233333333444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (623)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (623)
..++.++|.++++...+.... ++.....+...|.-.++.+.|+.+++++.+-|+. ++..|+.+.-+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 555555555555555544321 3344444444444555555555555555555532 34455555555555555555555
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 361 LYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 361 ~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
-|++....--.|+ ...|-.+-......|++.-|.+.|+-.+..+ .-....++.|.-.-.+.|++++|+.+++....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 5555443222222 2334444444455555555555555555432 12344455555445555666666655555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-05 Score=79.80 Aligned_cols=416 Identities=15% Similarity=0.129 Sum_probs=237.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHH--HHHHH--HcC
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNM--LMSVC--ASS 105 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~~~--~~~ 105 (623)
...|...++|++++|.+...++...+ |.+......-.-...+.+.+++|+.+.+.-... .+++. +=.+| .+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 34677779999999999999999887 333332222222344668899999776654321 11121 23343 467
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKAFG 183 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~ 183 (623)
+..++|+..+. |..+ |..+...-...+.+.|++++|..+|..+.+.+.+- +...-..++..-. ...+.
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~- 162 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ- 162 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-
Confidence 88999998887 3333 34466666778889999999999999997664221 1111111111111 01111
Q ss_pred HHHHHHhCCCCCCHHHHHHHH---HHHHccCCHHHHHHHHHHHhh--------CCCC---CCCCHH-HHHHHHHHHHHcC
Q 006981 184 AYGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDHI-TIGALMKACANAG 248 (623)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~--------~~~~---~~~~~~-~~~~ll~~~~~~g 248 (623)
.+......| ..+|..+. -.+...|++.+|++++....+ ...+ +..+.. .-.-|.-++-..|
T Consensus 163 ---~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 163 ---LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred ---HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 122221122 22333333 234556777788777776621 1000 000111 1122344556677
Q ss_pred ChHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHh-------------------------------------------
Q 006981 249 QVDRAREVYKMIHKYNIKGTPE----VYTIAINCCSQ------------------------------------------- 281 (623)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~------------------------------------------- 281 (623)
+.++|..++..+.+.+. +|.. .-|.++..-..
T Consensus 239 qt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777652 2221 11222111100
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 282 --TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (623)
Q Consensus 282 --~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 357 (623)
.+..+.+.++..... +..|. ..+..++..+.+ ......+.+++....+....-...+.-..+......|+++.
T Consensus 318 l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred HHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 011111111111111 22233 334444444332 22466777777776665433335566777788899999999
Q ss_pred HHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC--CCCCCHHHHHHHH----HHHHhcC
Q 006981 358 ALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILL----VACERKD 423 (623)
Q Consensus 358 A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll----~a~~~~g 423 (623)
|.+++. .+.+.+..|-.+ .++...+.+.++.+.|..++.+.... .-.+......+++ .--.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999999 666665555544 45677788888888788888776541 0122223333333 3335679
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cHHHHHHhhHhhhh
Q 006981 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVLS 470 (623)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~~~~a~~~~~~~~~ 470 (623)
+-++|..+++++.+.. .+|..+...+|.+|++ ..++|..+...+..
T Consensus 473 ~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDPEKAESLSKKLPP 519 (652)
T ss_pred chHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCHHHHHHHhhcCCC
Confidence 9999999999999852 5788889999999998 77888888766544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.3e-09 Score=94.88 Aligned_cols=233 Identities=14% Similarity=0.084 Sum_probs=173.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 006981 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (623)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~ 245 (623)
+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-+.|.+..+...|+.++.+-... ++-|+....-+.+.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHH
Confidence 56778888888888888888877766 566677777888888888888888888877653 2333333445667777
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (623)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (623)
..++.++|.++++...+.. +.++.+...+...|.-.++++.|++.++++++.|+. +...|..+.-+|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 7888888888888887765 556667777777788888888888888888888876 66777777777777888888888
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 326 ILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 326 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
-|.+....-..|+ ..+|..|-......|++..|.+.|+-...++ ..+...+|.|.-.-.+.|++++|..+++....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s- 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS- 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh-
Confidence 8887766533333 4567777777778888888888888777654 23567788887777888888888888887765
Q ss_pred CCCCC
Q 006981 404 GLCPN 408 (623)
Q Consensus 404 g~~p~ 408 (623)
+.|+
T Consensus 458 -~~P~ 461 (478)
T KOG1129|consen 458 -VMPD 461 (478)
T ss_pred -hCcc
Confidence 3454
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-06 Score=81.35 Aligned_cols=308 Identities=12% Similarity=0.028 Sum_probs=193.2
Q ss_pred CCCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 123 LKADCKLYTTLITTCAKS--GKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199 (623)
Q Consensus 123 ~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 199 (623)
++|...+...-+.+++.+ ++...|...+-.+... -++-|+.....+...+...|+..+|...|++.... .|+..+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh
Confidence 344444444455555443 4444444444443332 24567778888888888888888888888887755 333222
Q ss_pred -HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006981 200 -FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (623)
Q Consensus 200 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 278 (623)
.....-.+.+.|+.+....+...+.... +-....|-.-........++..|+.+-++..+.+ +.+...+-.-...
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~l 343 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRL 343 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHH
Confidence 1111223456677777777766665421 1222223333333445667788888877777665 4444555555666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHH
Q 006981 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS-NAKNWQ 356 (623)
Q Consensus 279 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~ 356 (623)
+.+.+++++|.-.|+..+.... -+...|.-++..|...|++.+|.-+-+...+. ++.+..+.+.+. ..|. ...--+
T Consensus 344 L~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence 7778888888888888776532 26678888888888888888887776665543 233444444331 2222 222346
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 357 KALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (623)
Q Consensus 357 ~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (623)
+|.++++.-... .|+ ....+.+...+...|..++++.+++.... ..||....+.|.+.+.....++++...|...
T Consensus 422 KAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 422 KAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 777777776654 344 34556666777788888888888888776 3788888888888888888888888888777
Q ss_pred HHCCCCCCH
Q 006981 436 KEDGVIPNL 444 (623)
Q Consensus 436 ~~~g~~p~~ 444 (623)
.. +.|+.
T Consensus 498 Lr--~dP~~ 504 (564)
T KOG1174|consen 498 LR--QDPKS 504 (564)
T ss_pred Hh--cCccc
Confidence 66 44543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-07 Score=94.85 Aligned_cols=264 Identities=14% Similarity=0.118 Sum_probs=147.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (623)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (623)
........+.+.|+.++|..+++.+.+.+ +.|..-|..+..+..-. .+.+...++|+++... -|...+...+
T Consensus 40 ~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl 116 (517)
T PF12569_consen 40 VLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRL 116 (517)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHh--CccccchhHh
Confidence 34445566777788888888888887775 33444444455444222 2456667777777654 2333333222
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC------------CCCCCCH-
Q 006981 169 IDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------------HPVDPDH- 234 (623)
Q Consensus 169 i~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------~~~~~~~- 234 (623)
.-.+..-..+ ..+...+..+..+|++ .+|+.|-..|......+-..+++....... ..-+|..
T Consensus 117 ~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~ 193 (517)
T PF12569_consen 117 PLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTL 193 (517)
T ss_pred hcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHH
Confidence 2222221222 2344455566666753 455555555665555444445554443210 0112333
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 235 -ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (623)
Q Consensus 235 -~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 313 (623)
.++..+...|...|++++|+...++..+.. |..+..|..-...|-+.|++.+|.+.++.....+.. |...-+..+..
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy 271 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHH
Confidence 233455566677777777777777777664 444666777777777777777777777777766554 66666666667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 314 AGHAGKVEAAFEILQEAKNQGISVGIIS--------YSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
+.++|+.++|.+++....+.+..|.... ......+|.+.|++..|++.|..+
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777777777777776665543221111 122334455555555555544444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-07 Score=94.26 Aligned_cols=240 Identities=16% Similarity=0.126 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhC---CCC-CCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhc-----C--
Q 006981 197 RVVFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHIT-IGALMKACANAGQVDRAREVYKMIHKY-----N-- 264 (623)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-- 264 (623)
..+...+...|...|+++.|..++....+. ..| ..|.+.+ .+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888899999999999988876542 112 1233333 234667888899999999999887653 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 006981 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVI-PDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQ---G 334 (623)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 334 (623)
.+.-..+++.|...|.+.|++++|...++...+ .|.. |.+ .-++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 111234677777889999999888888776543 1221 222 23566667788889999999988876542 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHcCCChhhHHHHHHHHH--
Q 006981 335 ISV----GIISYSSLMGACSNAKNWQKALELYEHMKSI----KL---KPTVSTMNALITALCDGDQLPKTMEVLSDMK-- 401 (623)
Q Consensus 335 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-- 401 (623)
..+ -..+++.|...|.+.|++++|.++|+...+. +- .-....++.|...|.+.++..+|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2457888999999999999999999887642 11 1123457778888899999999998888743
Q ss_pred --HCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 402 --SLGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 402 --~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
..|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3331 222 4568888899999999999999888775
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-07 Score=93.17 Aligned_cols=170 Identities=13% Similarity=0.142 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK-----NV- 193 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 193 (623)
..+...|...|...|+++.|..+++...+. |. .|... ..+.+...|...+++.+|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445666888888888888888888877653 21 12222 2334566777777777777777777542 21
Q ss_pred CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhC---CCCC-CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcC---
Q 006981 194 KP-DRVVFNALITACGQSGAVDRAFDVLAEMNAE---VHPV-DPDHI-TIGALMKACANAGQVDRAREVYKMIHKYN--- 264 (623)
Q Consensus 194 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~-~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 264 (623)
.| -..+++.|..+|.+.|++++|...+++.... ..+. .|.+. .++.+...|+..+++++|..+++...+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 1345566666777777777766666554321 0011 12211 23444555666666666666665443320
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 265 IKG----TPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 265 ~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+.+ -..+++.|...|.+.|++++|.++|++..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 011 12345555666666666666666655544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-05 Score=80.93 Aligned_cols=207 Identities=13% Similarity=0.157 Sum_probs=124.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC----------CCCCHH--HHHHHHHHHHh
Q 006981 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KG----------VIPDEV--FLSALIDFAGH 316 (623)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~----------~~p~~~--~~~~li~~~~~ 316 (623)
...++....+.|++ .++..+.+.|-.....+-..++.-.+.. .| -.|... ++..++..+-+
T Consensus 307 vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 33444555566654 3555555555443333322222222221 11 134443 44567778889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHH
Q 006981 317 AGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (623)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (623)
.|+++.|..+++....+- |+ +..|..=.+.+...|++++|..++++..+.. .+|...-.--..=..+.++.++|.+
T Consensus 384 ~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred cccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHH
Confidence 999999999999988763 43 3455555688899999999999999998755 3454433344455567899999999
Q ss_pred HHHHHHHCCCCCCHHH--------HHHH--HHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcHHH
Q 006981 396 VLSDMKSLGLCPNTIT--------YSIL--LVACERKDDVEVGLMLLSQAKED-----GVIPNLVMFKCIIGMCSRRYEK 460 (623)
Q Consensus 396 l~~~m~~~g~~p~~~t--------~~~l--l~a~~~~g~~~~a~~~~~~~~~~-----g~~p~~~~~~~li~~~~~~~~~ 460 (623)
+.....+.|. +... |-.+ ..+|.+.|++..|++=|..+.+. ...-|..+| |+=++-.|.|-+
T Consensus 461 ~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhty-c~rk~tlrsYv~ 537 (700)
T KOG1156|consen 461 VLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTY-CMRKGTLRSYVE 537 (700)
T ss_pred HHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHH-HHhcCcHHHHHH
Confidence 9999888775 3332 2222 25678888888887766665442 122333333 333333334555
Q ss_pred HHHhhHhh
Q 006981 461 ARTLNEHV 468 (623)
Q Consensus 461 a~~~~~~~ 468 (623)
-.++.+..
T Consensus 538 ll~~~d~L 545 (700)
T KOG1156|consen 538 LLEWEDNL 545 (700)
T ss_pred HHHHHHhh
Confidence 55555543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-06 Score=78.91 Aligned_cols=403 Identities=10% Similarity=0.067 Sum_probs=233.9
Q ss_pred hHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcC
Q 006981 28 QLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (623)
Q Consensus 28 ~~~~~~~l~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (623)
++..|=..+ +.|++++|+..+.-+...+-.+.. +...+.-..--.|.+.+|..+-.+.+. ++..-..+....-+.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e--l~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE--LGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc--cchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHh
Confidence 444554443 677777777777766554422211 111121111224666666666555542 233333444555556
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL-IDGCAKAGQVAKAFGA 184 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~ 184 (623)
++-++-..+.+.+... ..--.+|.+.....-.+.+|+++|...... .|+-...|.- .-+|.+..-++-+.++
T Consensus 135 ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 6666666555555432 122334555555556678888888888865 3555555543 3456677777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcc--CCH---------------------------------HHHHHHHHHHhhCCCC
Q 006981 185 YGIMRSKNVKPDRVVFNALITACGQS--GAV---------------------------------DRAFDVLAEMNAEVHP 229 (623)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~--g~~---------------------------------~~A~~~~~~m~~~~~~ 229 (623)
++-..+. ++.++...|....-..+. |+. +.|++++--+..
T Consensus 208 l~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~---- 282 (557)
T KOG3785|consen 208 LKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK---- 282 (557)
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh----
Confidence 7766654 222333444333222221 221 111111111110
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006981 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-----YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (623)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 304 (623)
.-| ..-..|+--|.+.+++.+|..+.+.+.-. .|-... +.++..-.....+..-|.+.|+-.-.++..-|.
T Consensus 283 ~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 283 HIP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred hCh--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccc
Confidence 011 12334555688999999999988876532 222222 222222222334466777877766655543332
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHH
Q 006981 305 V-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA-LIT 382 (623)
Q Consensus 305 ~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~ 382 (623)
. .-.++.+.+.-..++++.+-++..+..--...|...+ .+..+++..|++.+|.++|-++....+ .|..+|.+ |.+
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LAr 436 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLAR 436 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHH
Confidence 1 1234444555556788888888888765444444444 477899999999999999998875444 35556654 567
Q ss_pred HHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL-LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (623)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (623)
+|.+++.++-|.+++-++.. +.+..+...+ ..-|.+.+.+--|-+.|..+.. .+|++.-|..=-.+|..
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGACaG 506 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGACAG 506 (557)
T ss_pred HHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchHHH
Confidence 89999999999887765542 3344444444 4679999999999999998877 56887777766666655
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-06 Score=78.46 Aligned_cols=443 Identities=13% Similarity=0.100 Sum_probs=266.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCh
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (623)
..-++.+.++..|+.+++--...+- .....+..-++..+-..|++++|...+..+. .++...+-.|.-...-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 5567889999999999987664442 1222344444555567799999999998654 45666666666666667888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
.+|.++-... +.++..-..|.....+.++-++-..+...+.+ ...---+|.+..-..-.+++|++++.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9998876554 33455556677777888888888877777753 2233445666655667889999999999
Q ss_pred HhCCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc--CChHHHH--H--------
Q 006981 189 RSKNVKPDRVVFNALI-TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--GQVDRAR--E-------- 255 (623)
Q Consensus 189 ~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~--g~~~~A~--~-------- 255 (623)
... .|+-...|.-+ -+|.+..-++-+.+++.-..+. ++.+....|.......+. |+..+++ .
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 876 45666666544 4566777778788887776654 233344444443333322 2211111 0
Q ss_pred --HHHHHHhcCC------------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-H
Q 006981 256 --VYKMIHKYNI------------KG-----TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA-G 315 (623)
Q Consensus 256 --~~~~~~~~~~------------~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~-~ 315 (623)
.-+.+.+.++ -| -+...-.|+-.|.+.++..+|..+.+++.- ..|-......++.+. .
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALG 330 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhh
Confidence 1111111110 01 123445567778899999999998777643 234444433333321 1
Q ss_pred ----hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 006981 316 ----HAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (623)
Q Consensus 316 ----~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (623)
....+.-|.+.|+..-..+..-|.. ---++...+.-..++++.+..++.+...-...|...+| +..+++..|.+
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny 409 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNY 409 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcCh
Confidence 1123556677776665554433322 22344455556677899999888888755555666665 78899999999
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcHHHHHHhhHhhh
Q 006981 391 PKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 469 (623)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~ 469 (623)
.+|.++|-......+ .|..+|.+++ ++|.+.+.++.|+.++ ++..-..+..+.--+| +...-+|+++.-+..
T Consensus 410 ~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlI---An~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 410 VEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLI---ANDCYKANEFYYAAK 482 (557)
T ss_pred HHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 999999977664333 3677777655 6778899999987766 4433333333333333 221223444444444
Q ss_pred hccCC--CccchhhhhHH---HHHHHHHHHHcCCCC
Q 006981 470 SFNSG--RPQIENKWTSL---ALMVYREAIVAGTIP 500 (623)
Q Consensus 470 ~~~~~--~~~~~~~~~~~---a~~~~~~m~~~g~~p 500 (623)
.|+.. ..+.+..|... ...+|+.+......|
T Consensus 483 AFd~lE~lDP~pEnWeGKRGACaG~f~~l~~~~~~~ 518 (557)
T KOG3785|consen 483 AFDELEILDPTPENWEGKRGACAGLFRQLANHKTDP 518 (557)
T ss_pred hhhHHHccCCCccccCCccchHHHHHHHHHcCCCCC
Confidence 44432 23334456542 445666554433333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-07 Score=90.31 Aligned_cols=196 Identities=12% Similarity=0.043 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
..|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.+.|++..+.. +.+..+|..+...+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345566666667777777777777776654 4456677777777777777777777777776653 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHH
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (623)
...|++++|++.|++..+.. |+..........+...++.++|...|.+.... ..|+...+ .+. ....|+...
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~---~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK---LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh---CCccccHH-HHH--HHHccCCCH
Confidence 77777777777777766552 32221111112233455677777777554321 12332221 222 223444433
Q ss_pred HHHHHHHHHh---cCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 253 AREVYKMIHK---YNI---KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (623)
Q Consensus 253 A~~~~~~~~~---~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 299 (623)
+ ..+..+.+ ... +....+|..+...+.+.|++++|...|++....+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 23333321 111 1223567777777777777777777777777654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-06 Score=85.29 Aligned_cols=219 Identities=11% Similarity=-0.024 Sum_probs=134.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 211 GAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (623)
+..+.++.-+.++.... ...|+ ...|..+...|.+.|+.++|...|++..+.+ +.+...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34555666666665431 22222 2345566667777788888888888777765 55677788888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (623)
Q Consensus 289 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (623)
...|++..+.... +...+..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888887765433 45566667777777788888888888777654 32221222222334566788888888665432
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---G--LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (623)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g--~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (623)
. .|+...| . ......|+..++ +.+..+.+. . +.| ...+|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 2222222 1 222335555544 344444421 0 111 23467778888888999999999998888754
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.3e-06 Score=82.37 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=38.2
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCCH--HHHHHHHHHHHh
Q 006981 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTP--EVYTIAINCCSQ 281 (623)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~li~~~~~ 281 (623)
..+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++...... .++. ..|..+...+..
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 34444455555555555544321 22233344444444555555555555544443321 0111 123344444555
Q ss_pred cCCHHHHHHHHHHH
Q 006981 282 TGDWEFACSVYDDM 295 (623)
Q Consensus 282 ~g~~~~A~~l~~~m 295 (623)
.|++++|..++++.
T Consensus 199 ~G~~~~A~~~~~~~ 212 (355)
T cd05804 199 RGDYEAALAIYDTH 212 (355)
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-06 Score=75.55 Aligned_cols=200 Identities=16% Similarity=0.068 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (623)
+...|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34455666777777777777777777764 3345677777777777777777777777777653 334556677777777
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (623)
..|.+++|.+.|++.... .....-..+|..+.-+..+.|+.+.|...|++..+.+ +..+.+.-.+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 777777777777776653 1222223466666666677777777777777777765 44455666777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 289 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
...++.....+. ++..++-..|..--..|+.+.+-++=.++.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777776655 67777777777777777777776665555543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-05 Score=80.65 Aligned_cols=305 Identities=15% Similarity=0.025 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA-- 202 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-- 202 (623)
...|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 44556666666667777776666666554321 1222 112222334567788999999988887663 334444442
Q ss_pred -HHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006981 203 -LITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (623)
Q Consensus 203 -li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (623)
........+..+.+.+.+... .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 111112245555555555442 123344 3444566678899999999999999999886 666788899999999
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcC
Q 006981 281 QTGDWEFACSVYDDMTKKGV-IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAK 353 (623)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g 353 (623)
..|++++|...+++...... .|+. ..|..+...+...|+.++|..+++....... .+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 99999999999998877532 2232 3455677888999999999999999864432 1222211 1 3333344445
Q ss_pred CHHHHHHH--H-HHHHhCCC-CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCC-------C-CHHHHHHHHHHHHh
Q 006981 354 NWQKALEL--Y-EHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-------P-NTITYSILLVACER 421 (623)
Q Consensus 354 ~~~~A~~~--~-~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-------p-~~~t~~~ll~a~~~ 421 (623)
....+.+. . ..-..... ............++...|+.++|..++..+...... . ..........++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 33333332 1 21111100 111122235667788899999999999988753211 0 11112222245678
Q ss_pred cCCHHHHHHHHHHHHH
Q 006981 422 KDDVEVGLMLLSQAKE 437 (623)
Q Consensus 422 ~g~~~~a~~~~~~~~~ 437 (623)
.|+.++|.+.+.....
T Consensus 320 ~g~~~~A~~~L~~al~ 335 (355)
T cd05804 320 EGNYATALELLGPVRD 335 (355)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-06 Score=73.75 Aligned_cols=193 Identities=11% Similarity=0.057 Sum_probs=98.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (623)
|.-.|...|+...|..-+++..+.+ +.+..+|..+...|.+.|..+.|.+-|++....... +....|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 4444555555555555555555554 444455555555555555555555555555544322 33334444444555555
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHH
Q 006981 320 VEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (623)
Q Consensus 320 ~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (623)
+++|...|++..... ..--..+|..+.-+..+.|+.+.|...|++..+... -...+.-.+.....+.|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555554431 111233455555555555556666655555554431 122344455555555666666665555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 399 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
.....+. ++..+.-..|..-...|+.+.+-++=.++.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5554433 555555555555555565555555444443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.0002 Score=72.39 Aligned_cols=465 Identities=12% Similarity=0.164 Sum_probs=287.7
Q ss_pred CCCCCCCCCCCCccCChhhhHHHHHHHH--hcCCH-HHHHHHHHHHHHcCCCCCchHHHHHHH-HH------Hh------
Q 006981 9 LQFPYPNGKHANYAHDVSEQLHSYNRLI--RQGRI-SECIDLLEDMERKGLLDMDKVYHARFF-NV------CK------ 72 (623)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~l~-~~------~~------ 72 (623)
+..||......+ +-++.+|-.+| +.|.. ..-..+|++..+.-+ ......+.++- +. |-
T Consensus 12 EDvpfEeEilRn-----p~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp-~sykiW~~YL~~R~~~vk~~~~T~~~~~ 85 (835)
T KOG2047|consen 12 EDVPFEEEILRN-----PFSVKCWLRYIEHKAGSPDKQRNLLYERALKELP-GSYKIWYDYLKARRAQVKHLCPTDPAYE 85 (835)
T ss_pred cccchHHHHHcC-----chhHHHHHHHHHHHccCChHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHhhccCCCChHHH
Confidence 445555443333 55778898888 55544 445567788877542 22333333331 11 11
Q ss_pred -hhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 006981 73 -SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVF 150 (623)
Q Consensus 73 -~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 150 (623)
-++.++.++.++.+|| ..|-..+..+.++|++......|+..+..- +.-....|...+......+-++-+..+|
T Consensus 86 ~vn~c~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvy 161 (835)
T KOG2047|consen 86 SVNNCFERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVY 161 (835)
T ss_pred HHHHHHHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHH
Confidence 1233455555555554 468888888899999999999998887642 2223457888888888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHccCCHH---HHHHHHH
Q 006981 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVVFNALITACGQSGAVD---RAFDVLA 221 (623)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~---~A~~~~~ 221 (623)
++.++. ++..-+--|..+++.+++++|-+.+...... ..+.+-..|..+-...++.-+.- ....++.
T Consensus 162 rRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR 237 (835)
T KOG2047|consen 162 RRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIR 237 (835)
T ss_pred HHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHH
Confidence 999854 4555778888899999999999999887543 12445566776666666554322 2333444
Q ss_pred HHhhCCCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------------cC
Q 006981 222 EMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----------------TG 283 (623)
Q Consensus 222 ~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~g 283 (623)
.+. +.-+| ...|++|.+-|.+.|.+++|..+|++....-. +..-|+.+.++|++ .+
T Consensus 238 ~gi----~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~ 311 (835)
T KOG2047|consen 238 GGI----RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESG 311 (835)
T ss_pred hhc----ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 443 23455 35789999999999999999999998876532 11223333333322 11
Q ss_pred C------HHHHHHHHHHHHhCCC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHH
Q 006981 284 D------WEFACSVYDDMTKKGV----------IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV------GII 340 (623)
Q Consensus 284 ~------~~~A~~l~~~m~~~~~----------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~ 340 (623)
+ ++-...-|+.+...+. .| ++.+|..-+. ...|+..+-...+.+..+. +.| -..
T Consensus 312 n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~ 388 (835)
T KOG2047|consen 312 NEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGT 388 (835)
T ss_pred ChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhh
Confidence 1 2223333444433211 01 2333333332 2346677777788877664 122 235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhhHHHHHHHHHHCC----------CCC
Q 006981 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLG----------LCP 407 (623)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------~~p 407 (623)
.|..+...|...|+++.|+.+|++..+...+-- ..+|..-...=.++.+++.|+++.+...... -.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 688889999999999999999999987543221 2456666666678889999999998875421 111
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcHHHHHHhhHhhhhccCCC----
Q 006981 408 -------NTITYSILLVACERKDDVEVGLMLLSQAKEDGVI-PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR---- 475 (623)
Q Consensus 408 -------~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~-p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~---- 475 (623)
+...|+.+++.--..|-++....+++++++..+. |....--++. +++-.-++++...|..+-
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf------LEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF------LEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH------HHhhHHHHHHHHHHHcCCccCC
Confidence 1234666666666678888889999999876443 4333322221 344444444444444442
Q ss_pred -ccchhhhhH---------------HHHHHHHHHHHcCCCCcHH
Q 006981 476 -PQIENKWTS---------------LALMVYREAIVAGTIPTVE 503 (623)
Q Consensus 476 -~~~~~~~~~---------------~a~~~~~~m~~~g~~p~~~ 503 (623)
|..-.-|+. .|-.+|++.++ |+.|...
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 222234543 48889999888 7777763
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00013 Score=69.88 Aligned_cols=417 Identities=12% Similarity=0.080 Sum_probs=244.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC------------------CCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGL------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT 91 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 91 (623)
..++.+-+...+..|.+-|....+... .+.+.......+..+...++-++|+....++|+.-
T Consensus 48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~ 127 (564)
T KOG1174|consen 48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL 127 (564)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence 345555577778888888877654321 11122222333444455566677777777776432
Q ss_pred H-HHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 92 L-STFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 92 ~-~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
. .--|.++.-+-+.| +-.++.--+......- +. . ...|.+..+.+ +..+...=..|-...++|+..+...-+
T Consensus 128 r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~---a-L~~i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wi 201 (564)
T KOG1174|consen 128 RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-PM---A-LQVIEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWI 201 (564)
T ss_pred cchhHHHHHHHHHhccccccHHHHhhhHHHHhc-ch---H-HHHHHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHH
Confidence 2 23344444333333 2112222222222110 10 0 11111222111 011111111122222344444444444
Q ss_pred HHHHh--cCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHH
Q 006981 170 DGCAK--AGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACA 245 (623)
Q Consensus 170 ~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~~ll~~~~ 245 (623)
.+++. .++...|...+-.+... -++-|+.....+...+...|+.++|...|+.... +.|+..+ .....-.+.
T Consensus 202 ka~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~ 277 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLG 277 (564)
T ss_pred HHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHH
Confidence 44443 45555555555444332 3456777888999999999999999999998764 3454332 111222346
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (623)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (623)
+.|+.++...+...+.... ......|-.-........+++.|+.+-++.++.+.. +...+-.-...+...|+.++|.-
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred hccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHH
Confidence 7788888877777765543 222344544455556678899999998888876433 44445444556778899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH-HcCCChhhHHHHHHHHHHC
Q 006981 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI-TAL-CDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~-~~~g~~~~A~~l~~~m~~~ 403 (623)
.|+...... +.+...|..|+..|...|++.+|.-+-+..... ++.+..+.+.+. ..+ .....-++|.+++++-.+
T Consensus 356 aFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~- 432 (564)
T KOG1174|consen 356 AFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK- 432 (564)
T ss_pred HHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc-
Confidence 999887653 457889999999999999999988776554332 123445554431 222 223345789999988776
Q ss_pred CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHh
Q 006981 404 GLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464 (623)
Q Consensus 404 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~ 464 (623)
+.|+. .....+...|...|..+.++.+++.... ..||...-+.|-+.+.- .+.+|.+.
T Consensus 433 -~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 433 -INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred -cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 46764 3466677889999999999999998877 57888888887776542 34444433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.8e-05 Score=76.97 Aligned_cols=201 Identities=11% Similarity=0.040 Sum_probs=113.1
Q ss_pred CCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 006981 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTL 133 (623)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~~~~~~~l 133 (623)
.|+..+.-.+.-.....|++..+.+.|++..+ .....|+.+-..++..|.-..|..+++.-....-.| |...+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 35555555555555667888888888887543 345567777777888888888888887665433223 33333333
Q ss_pred HHHHH-HcCChhHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCC-CCC
Q 006981 134 ITTCA-KSGKVDAMFEVFHEMVNA--GI--EPNVHTYGALIDGCAKA-----------GQVAKAFGAYGIMRSKNV-KPD 196 (623)
Q Consensus 134 i~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~-~p~ 196 (623)
-..|. +.+.+++++..-.+.... +. ......|..+.-+|... ....++++.+++..+.+. .|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 33333 235566666555555441 10 11233344444444321 224566777777765532 222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 006981 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (623)
+..| +---|+..++++.|++...+..+-+ -..+...|..|.-.+...+++.+|+.+.+....
T Consensus 480 ~if~--lalq~A~~R~l~sAl~~~~eaL~l~--~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 480 VIFY--LALQYAEQRQLTSALDYAREALALN--RGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHH--HHHHHHHHHhHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2222 3334556667777777777766532 234556666666667777777777777665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.5e-05 Score=85.62 Aligned_cols=337 Identities=9% Similarity=-0.039 Sum_probs=206.0
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHH
Q 006981 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI------EPN--VHTYGALIDGCA 173 (623)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~--~~~~~~li~~~~ 173 (623)
....|++..+...++.+.......+..........+...|+++++..++......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445677776666665542211112222333445556678899999988887754210 111 112223334556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC---CHHHHHHHHHHHHH
Q 006981 174 KAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACAN 246 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~~ll~~~~~ 246 (623)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+.........+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999887653111121 23455566677889999999998887642111111 12344556677888
Q ss_pred cCChHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHH
Q 006981 247 AGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIP--DEVFLSALIDFAG 315 (623)
Q Consensus 247 ~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p--~~~~~~~li~~~~ 315 (623)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999988776542 211 1 1233455566677789999999998877542 1112 1233444556777
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHc
Q 006981 316 HAGKVEAAFEILQEAKNQG--ISVGII--S-Y-SSLMGACSNAKNWQKALELYEHMKSIKLKPTV---STMNALITALCD 386 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~--~~~~~~--~-~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~ 386 (623)
..|+.+.|...+....... ...... . . ...+..+...|+.+.|...+............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999999888875421 111111 0 0 11224455688999999988776542211111 113456677888
Q ss_pred CCChhhHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 387 GDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 387 ~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999887642 32222 234556667888999999999999998764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00011 Score=68.47 Aligned_cols=327 Identities=16% Similarity=0.162 Sum_probs=194.5
Q ss_pred CCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHH---HHHHcCCChHHHHHHHHHHHHcCCCCCHHH-HHHH
Q 006981 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM---SVCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTL 133 (623)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~-~~~l 133 (623)
+.+..-|.-++..+...|++.+|+..|.....-|+..|.++. ..|...|+...|+.=+.+.++. +||-.. -..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 345556666777777778888888888887766666666655 3577788888888888877764 666432 1222
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 006981 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (623)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (623)
...+.+.|.+++|..-|+..++. .|+..+ ...++.+.-..++-+. ....+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~--~~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH--EPSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc--CCCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCch
Confidence 34566888888888888888876 333211 1122222211111111 12233345567788
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (623)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 293 (623)
..|+.....+.+. .+.|...+..-..+|...|++..|+.=++...+.. ..+...+-.+-..+...|+.+.++...+
T Consensus 172 ~~ai~~i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 172 QNAIEMITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhHHHHHHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 8888888877753 24566677777788888888888888777776664 4455666677777788888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373 (623)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 373 (623)
+.++.+ ||....-. .| ..+.+..+.+..|.+ ....+++.++.+-.+...+......
T Consensus 248 ECLKld--pdHK~Cf~---~Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 248 ECLKLD--PDHKLCFP---FY---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHHccC--cchhhHHH---HH---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCccc
Confidence 877653 44432111 11 112222222222222 1233445555555555444322211
Q ss_pred HH---HHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 374 VS---TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 374 ~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
.. .+..+-.++...|++.+|++.-.+.+. +.|| ..++.--..+|.-...++.|+.-|+...+
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 22 223344455566677777777766665 3454 55666666666666677777777766665
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00019 Score=71.93 Aligned_cols=381 Identities=12% Similarity=0.111 Sum_probs=209.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHH
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 111 (623)
.-+||+.+++++|+.+.+.=.... ..+...+.-.+ ..-+.+..++|+..++...+.+..+...-...+.+.+++++|
T Consensus 53 vValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAY-c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 53 VVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAY-CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred HhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHH-HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHH
Confidence 345779999999996665433211 11111111111 112457899999999966666666777777889999999999
Q ss_pred HHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHH
Q 006981 112 FQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI---DGCAKAGQVAKAFGAYG 186 (623)
Q Consensus 112 ~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li---~~~~~~g~~~~A~~~~~ 186 (623)
+.+|+.+.+.+.+ |.. .-..++.+-.. -.+ ++.+... ..| ..+|..+- -.+...|++.+|+++++
T Consensus 130 ldiY~~L~kn~~d-d~d~~~r~nl~a~~a~----l~~-~~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~ 199 (652)
T KOG2376|consen 130 LDIYQHLAKNNSD-DQDEERRANLLAVAAA----LQV-QLLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLE 199 (652)
T ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHHHHHh----hhH-HHHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9999999877632 211 11111111110 011 1122221 122 22333222 23456777777777777
Q ss_pred HHHhC-------C------CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH----HHHHHHHHHHc-
Q 006981 187 IMRSK-------N------VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT----IGALMKACANA- 247 (623)
Q Consensus 187 ~m~~~-------g------~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----~~~ll~~~~~~- 247 (623)
..... + +.-+..+ --.|.-.+-..|+..+|.+++....+.. .+|... -|.|+..-...
T Consensus 200 kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~---~~D~~~~Av~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 200 KALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN---PADEPSLAVAVNNLVALSKDQN 276 (652)
T ss_pred HHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc---CCCchHHHHHhcchhhhccccc
Confidence 66211 1 0000011 1123334455677777877777776542 222211 11111110000
Q ss_pred --------------------------------------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--
Q 006981 248 --------------------------------------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-- 281 (623)
Q Consensus 248 --------------------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 281 (623)
+..+.+.++-.... +..| ...+..++....+
T Consensus 277 ~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~ 353 (652)
T KOG2376|consen 277 YFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSP-ESLFPILLQEATKVR 353 (652)
T ss_pred cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHH
Confidence 00111111111100 1112 2334444444332
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSSLMGACSNAK 353 (623)
Q Consensus 282 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g 353 (623)
...+..+.+++...-+....-.....-..+......|+++.|.+++. .+.+.+..| .+..+++..|.+.+
T Consensus 354 ~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 354 EKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIK 431 (652)
T ss_pred HHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhcc
Confidence 22466777777776665333234555666777888999999999999 555555444 45567788888888
Q ss_pred CHHHHHHHHHHHHhC--CCCCCH----HHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 354 NWQKALELYEHMKSI--KLKPTV----STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (623)
Q Consensus 354 ~~~~A~~~~~~m~~~--~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (623)
+-+.|..++...... .-.+.. .+|.-+...-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +++.
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~ek 509 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEK 509 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHH
Confidence 877777777765431 001122 233344444557899999999999999853 67888999999998876 4566
Q ss_pred HHHHHHHH
Q 006981 428 GLMLLSQA 435 (623)
Q Consensus 428 a~~~~~~~ 435 (623)
|..+-+.+
T Consensus 510 a~~l~k~L 517 (652)
T KOG2376|consen 510 AESLSKKL 517 (652)
T ss_pred HHHHhhcC
Confidence 66655443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.4e-07 Score=87.75 Aligned_cols=82 Identities=26% Similarity=0.272 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 006981 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFEIL 327 (623)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~ 327 (623)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +..++..++......|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 345555555554433 2344455555555555555555555555554433322 333444444444444444 3444455
Q ss_pred HHHHH
Q 006981 328 QEAKN 332 (623)
Q Consensus 328 ~~~~~ 332 (623)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 54444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00035 Score=65.32 Aligned_cols=319 Identities=12% Similarity=0.081 Sum_probs=190.2
Q ss_pred CCccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHH-H
Q 006981 19 ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLST-F 95 (623)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~-~ 95 (623)
...|-++...+..-+.|+-.|++.+|+.-|....+-+ |.+-.....-...+...|....|+.=|.++. .||-.. -
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence 3455667777788889999999999999999999877 5554444444445556666666776666654 344321 1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH--HH------------HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006981 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADC--KL------------YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (623)
Q Consensus 96 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~--~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (623)
..-...+.+.|.+++|..=|+..+++....+. .. ....+..+.-.|+...|+.....+++.. +.|
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wd 188 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWD 188 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cch
Confidence 12234688999999999999999987422111 11 1222333445677777888877777654 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 006981 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll 241 (623)
...|..-..+|...|++..|+.-++...+.. .-++.++--+-..+...|+.+.++....+..+ +.||...+-..-
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldpdHK~Cf~~Y 263 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDPDHKLCFPFY 263 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCcchhhHHHHH
Confidence 7777777788888888888877666655442 23455555666667777888877777777664 456654332111
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcC
Q 006981 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF---LSALIDFAGHAG 318 (623)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~---~~~li~~~~~~g 318 (623)
..+.+..+.++.|. .....++|.++++-.+...+.......+. +..+-.++...|
T Consensus 264 ------KklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 264 ------KKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred ------HHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 11111111111111 12234555555555555555433211222 223333444556
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (623)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (623)
++.+|++.-.++.... +.|+.++---..+|.-...++.|+.-|+...+.
T Consensus 322 ~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6666666666665542 223556666666666666667776666666653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00018 Score=82.60 Aligned_cols=331 Identities=10% Similarity=0.015 Sum_probs=209.5
Q ss_pred hhHHHHHHHHHhhhCCC----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHHc
Q 006981 73 SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KAD--CKLYTTLITTCAKS 140 (623)
Q Consensus 73 ~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------~~~--~~~~~~li~~~~~~ 140 (623)
..|+.+.+...++.++. .+..........+...|++++|...+....+.-- .+. ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 34566777777766641 2222333444556678999999999987754311 111 11222334456688
Q ss_pred CChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHccC
Q 006981 141 GKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRVVFNALITACGQSG 211 (623)
Q Consensus 141 g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g 211 (623)
|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |- .+...++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999988763111221 34556666778899999999999887642 21 111234455667788899
Q ss_pred CHHHHHHHHHHHhhCC--CCCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhc
Q 006981 212 AVDRAFDVLAEMNAEV--HPVD--P-DHITIGALMKACANAGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQT 282 (623)
Q Consensus 212 ~~~~A~~~~~~m~~~~--~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~ 282 (623)
++++|...+.+..... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 9999999887765421 1111 1 22334455667778899999999998775431 111 233455566778889
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 006981 283 GDWEFACSVYDDMTKKG--VIPDEV--FL--SALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAK 353 (623)
Q Consensus 283 g~~~~A~~l~~~m~~~~--~~p~~~--~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 353 (623)
|++++|.+.+.+..... ...... .. ...+..+...|+.+.|...+........... ......+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 99999999998875421 111111 10 1122444567899999998776544221111 112345677788999
Q ss_pred CHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 354 NWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 354 ~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999887642 22222 245666777888999999999999998875
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-08 Score=60.21 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 006981 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (623)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (623)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.6e-08 Score=59.59 Aligned_cols=32 Identities=53% Similarity=0.865 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 157 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00031 Score=69.79 Aligned_cols=404 Identities=14% Similarity=0.051 Sum_probs=216.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCh
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (623)
-|..+..|+++.|+.+|-+.+..+ |.+.+.++.-...+.+.|++.+|++=-.+.. +.=...|+-...++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 356678889999999998888766 5677776666777777788888776554432 23345788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHhcCCHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-----DGCAKAGQVAKAFG 183 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~ 183 (623)
++|+..|..-++.. +.+...++-+.+++.... .+.+.|. +...|..+. +.+...-.+..-++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---Hhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 88888888877764 455667777777761110 0111110 111111111 11111111111111
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHH---------hhCCCCCCC--C----------HHHHHHH
Q 006981 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRA-FDVLAEM---------NAEVHPVDP--D----------HITIGAL 240 (623)
Q Consensus 184 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m---------~~~~~~~~~--~----------~~~~~~l 240 (623)
.+..-... +...+ ...++.+.......+.- ...-..+ .....+.++ | ..-...+
T Consensus 154 ~~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred HhhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 11100000 00000 00111111100000000 0000000 000000000 1 1123456
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHH
Q 006981 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS-------ALIDF 313 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~-------~li~~ 313 (623)
.++.-+..+++.|.+-+....... .+..-++....+|...|.+.++...-.+..+.|.. ...-|+ .+..+
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhh
Confidence 666677778888888888877765 44555677777888888887777776666555432 112222 23335
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhh
Q 006981 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLPK 392 (623)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~ 392 (623)
|.+.++++.|...|.+.......|+. ..+....+++....+...-.+ |... ---.-...+.+.|++..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHH
Confidence 66677888888888886655434332 223344455555554443322 2221 11122456778889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-H--HHHHHHHHhcHHHHHHhhHhhh
Q 006981 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM-F--KCIIGMCSRRYEKARTLNEHVL 469 (623)
Q Consensus 393 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~-~--~~li~~~~~~~~~a~~~~~~~~ 469 (623)
|+..+.++++.. +-|...|+.-.-+|.+.|.+..|+.-.+..++. .|+... | ...+--..++|++|.+-...-+
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888764 336777888888888889888888887777663 455432 1 1111111235666665544433
Q ss_pred h
Q 006981 470 S 470 (623)
Q Consensus 470 ~ 470 (623)
.
T Consensus 454 e 454 (539)
T KOG0548|consen 454 E 454 (539)
T ss_pred h
Confidence 3
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00024 Score=72.67 Aligned_cols=195 Identities=15% Similarity=0.174 Sum_probs=116.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 006981 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (623)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (623)
.+.+......+.+|+.+++.+..+. .-..-|..+.+.|+..|+++.|.++|.+. ..++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 3445556666777777777666542 22234566667777777777777777543 234556677777777
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (623)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (623)
++.|.++-.+.. +.......|-+-..-.-+.|++.+|.++|-.+.. |+ ..|.+|-+.|..++.+++.
T Consensus 807 w~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 807 WEDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHH
Confidence 777777766543 2233444555555555666777777776654432 21 2456677777777766665
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (623)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (623)
.+--... -..|...+..-+...|++..|..-|-+. .-|.+-+++|-..+.+++|.++-+
T Consensus 874 ~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 874 EKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 5432111 1234555666666777777777666433 235566677777777777766644
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.6e-06 Score=80.05 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 006981 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLLS 433 (623)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~ 433 (623)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..... +-|..|+..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 23344444444444445555555555444443321 11333444444444444444 33444444
Q ss_pred HHHH
Q 006981 434 QAKE 437 (623)
Q Consensus 434 ~~~~ 437 (623)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00021 Score=75.78 Aligned_cols=76 Identities=13% Similarity=0.034 Sum_probs=56.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHH
Q 006981 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (623)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~ 114 (623)
..+...|+..|-+..+.+ +.-......++..++.-.+...|.+.|++.. +.+...+......|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 445777888887777776 4455566678888887778888998888764 45666777788888888888888777
Q ss_pred H
Q 006981 115 L 115 (623)
Q Consensus 115 ~ 115 (623)
.
T Consensus 549 ~ 549 (1238)
T KOG1127|consen 549 C 549 (1238)
T ss_pred H
Confidence 3
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0011 Score=68.89 Aligned_cols=210 Identities=11% Similarity=0.066 Sum_probs=122.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-H
Q 006981 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV-F 200 (623)
Q Consensus 122 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~ 200 (623)
.+.-|...|..|.-++..+|+++.+.+.|++....- -.....|+.+-..|...|.-..|..+++.-....-.|+..+ +
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345577777777777888888888888887766432 23456677777778888887778877776654432233332 2
Q ss_pred HHHHHHHHc-cCCHHHHHHHHHHHhhCCCCC--CCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhcCCC
Q 006981 201 NALITACGQ-SGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMKACANA-----------GQVDRAREVYKMIHKYNIK 266 (623)
Q Consensus 201 ~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~--~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 266 (623)
-..-..|.+ .+..+++..+-.+......+. ......|..+.-+|... ....++.+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 222233332 355555555544443310000 11223344443334321 11345666666666665 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
.|+.+...+.--|+..++.+.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+.....
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3444434444456677778888888877777654556677777777777777888888777765543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00012 Score=71.20 Aligned_cols=214 Identities=11% Similarity=0.017 Sum_probs=136.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (623)
+..+-..+...++.++|+.+...+++.. +-+..+|+..-.++...| ++++++..++++.+.. +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 3333444556677888888888888764 334456666666666666 5688888888887764 345566776655555
Q ss_pred hcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc---C
Q 006981 174 KAGQV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---G 248 (623)
Q Consensus 174 ~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~---g 248 (623)
+.|+. ++++..++++.+.. +-|..+|+...-++...|+++++++.++++.+.. ..|..+|+.....+.+. |
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhccccc
Confidence 66653 56777777777664 4467778777777777788888888888887642 34455565555444443 2
Q ss_pred Ch----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006981 249 QV----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (623)
Q Consensus 249 ~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 316 (623)
.. +........+.... +.+..+|+-+...+... ++..+|.+.+.+....++. +...+..|++.|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 22 35556665666654 55667787777777663 3345577777776654432 55666677777664
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.2e-05 Score=82.32 Aligned_cols=234 Identities=12% Similarity=0.043 Sum_probs=175.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 006981 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (623)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 268 (623)
+-+...|-..|.-..+.++.++|++++++.... +.+ -...|.++++.-...|.-+...++|+++.+.. ..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t---IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~ 1529 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT---INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DA 1529 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh---CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--ch
Confidence 445667888888888899999999999888753 222 13467777777777788888899999888764 22
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 006981 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMG 347 (623)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~ 347 (623)
-.+|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+..+-+.|..++.+..+.-.+ -......-.+.
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 45788899999999999999999999987532 35678888889999888889999999888765211 23455666677
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCH
Q 006981 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDV 425 (623)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~ 425 (623)
.-.+.|+.+.++.+|+...... +.....|+..|+.-.++|+.+.+..+|++....++.|- ...|...|..-...|+-
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 7788999999999999887654 34567899999999999999999999999998887764 33455566554555554
Q ss_pred HHHHHHHHH
Q 006981 426 EVGLMLLSQ 434 (623)
Q Consensus 426 ~~a~~~~~~ 434 (623)
+.+..+=.+
T Consensus 1688 ~~vE~VKar 1696 (1710)
T KOG1070|consen 1688 KNVEYVKAR 1696 (1710)
T ss_pred hhHHHHHHH
Confidence 444433333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.7e-05 Score=82.62 Aligned_cols=225 Identities=11% Similarity=0.155 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-----DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 165 (623)
+...|-..|.-..+.++.+.|.+++++++.. +.+ -...|.++++.-...|.-+...++|++..+.. -.-..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4567888888888888888888888888753 222 13367777777777777778888888888742 124467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 006981 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (623)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~ 245 (623)
..|...|.+.+.+++|.++|+.|.++ +.-....|...+..+.+..+-+.|..++.+..+.- +-.-......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHh
Confidence 88888888888888999998888765 23466788888888888888888888888877631 10112333444555667
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHH
Q 006981 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVE 321 (623)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 321 (623)
+.|+.+.++.+|+...... |--...|+..|+.-.+.|..+.+..+|++....++.|-. +.|...+..=-..|+-+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 8888888888888887664 445678888888888888888888888888888776532 34444444333334433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0011 Score=68.97 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh--cHHHHHHhhHhh
Q 006981 424 DVEVGLMLLSQAKEDGVIPN----LVMFKCIIGMCSR--RYEKARTLNEHV 468 (623)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~~~--~~~~a~~~~~~~ 468 (623)
+..+++.-...|.+..+.|| ...|..||..+.+ .|..|++..+.+
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el 1356 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTEL 1356 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 66777777777776655554 3456777776664 788888776544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00055 Score=62.81 Aligned_cols=313 Identities=14% Similarity=0.108 Sum_probs=175.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHH-HHHHHHcCC
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNM-LMSVCASSK 106 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-li~~~~~~~ 106 (623)
.+...||+..++.+|++++..-.++. |.+..-.+.++..+-...++..|...+++.. .|...-|.. -...+.+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 34557899999999999999988887 5566666667776777788999999998864 344443432 234566778
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTC--AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (623)
.+..|+.+...|... |+...-..-+.+. ...+++..+..+.++.... .+..+.+...-..-+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 889999998887642 2222222222222 2457777888888777642 2444444444445688999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHh
Q 006981 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT--IGALMKACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (623)
|....+-+--.....||.-+ +..+.|+.+.|++...++..++..-.|.... -.-.+++ ...|+. . .|..
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~----~lh~ 237 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---L----VLHQ 237 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---H----HHHH
Confidence 98887654333456676554 4556688888888888877642211121000 0000000 000000 0 0011
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006981 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (623)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (623)
.++ +..+|.-...+.+.++++.|.+.+-+|.-+ ....|.+|...+.-. --.+++..+.+-++-+...+. -...|
T Consensus 238 Sal---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ET 312 (459)
T KOG4340|consen 238 SAL---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPET 312 (459)
T ss_pred HHH---HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHH
Confidence 111 134444455555666666666666665432 112244443322211 112344444444444444432 23455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 006981 342 YSSLMGACSNAKNWQKALELYEH 364 (623)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~ 364 (623)
|..++-.|||..-++-|-+++.+
T Consensus 313 FANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhh
Confidence 66666666666666666666544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.002 Score=68.73 Aligned_cols=305 Identities=14% Similarity=0.149 Sum_probs=175.0
Q ss_pred HHhhhHHHHHHHHHhhhCC-CCCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 006981 70 VCKSQKAIKEAFRFFKLVP-NPTLS-----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (623)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (623)
++...+-..+-+++++++. +++++ .-|.||-...+. +.....+..+++..-. .|+ +...+...+-+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLY 1064 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHH
Confidence 3344444555666666543 33222 223333332222 3344445554444322 122 33444555666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006981 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (623)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (623)
++|..+|++.. .+....+.||. .-+..+.|.+.-++.- .+..|+.+..+-.+.|.+.+|.+-|-+.
T Consensus 1065 EEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1065 EEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 77777776653 45555555554 3455566655544432 3467888888888888888888777443
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (623)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 303 (623)
.|...|.-+++...+.|.+++-.+.+....+..-.|. +=+.||-+|++.++..+-++.+. -||
T Consensus 1131 --------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~-------gpN 1193 (1666)
T KOG0985|consen 1131 --------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA-------GPN 1193 (1666)
T ss_pred --------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc-------CCC
Confidence 2445778888888888888888888877777654443 44678888888888776555432 367
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (623)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 383 (623)
......+.+-|...|.++.|.-++.. +.-|..|...+...|++..|.+.-++. .+..||-.+-.+
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFA 1258 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHH
Confidence 77777777778788888777777653 445666666777777777776655443 245566665555
Q ss_pred HHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (623)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (623)
|...+.+.-| +|....+..-..-..-++.-|...|-+++.+.+++
T Consensus 1259 Cvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1259 CVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 5554433322 12111122223334444555555555555444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-05 Score=80.37 Aligned_cols=221 Identities=13% Similarity=0.066 Sum_probs=145.5
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (623)
+.+.|++.+|.-.|+...++. +-+...|.-|.......++-..|+..+.+..+.+ +.+..+.-+|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 456777888888888777652 3345677777777777777778888888888776 667777778888888888888
Q ss_pred HHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 287 FACSVYDDMTKKGVI--------PDEVFLSALIDFAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKNWQK 357 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~ 357 (623)
+|++.|+.-+...++ ++..+-.. ........+....++|-++. ..+..+|+.+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888888776543211 00000000 01111112333444444443 33444677777777777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
|.+.|+...+.. +-|...||-|...++...+.++|+..|++.++ ++|+- ....-|.-+|...|.+++|...|=.++
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 888888877654 23567788888888888888888888888876 56763 234445557788888888877775543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0019 Score=64.37 Aligned_cols=390 Identities=12% Similarity=0.128 Sum_probs=202.7
Q ss_pred HHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH
Q 006981 51 MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127 (623)
Q Consensus 51 m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~ 127 (623)
-.+.+ |.+......+++-+..+ .+++++..++++. +.....|..-|..-...++++....+|.+.+..- .+.
T Consensus 12 rie~n--P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Lnl 86 (656)
T KOG1914|consen 12 RIEEN--PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNL 86 (656)
T ss_pred HHhcC--CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhH
Confidence 34445 66777777777777766 8999999999875 4466789999999999999999999999988763 345
Q ss_pred HHHHHHHHHHHHc-CChhH----HHHHHHHH-HHCCCCCC-HHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhC
Q 006981 128 KLYTTLITTCAKS-GKVDA----MFEVFHEM-VNAGIEPN-VHTYGALIDG---------CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 128 ~~~~~li~~~~~~-g~~~~----A~~~~~~m-~~~g~~~~-~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~ 191 (623)
..|..-++--.+. ++... ..+.|+-. .+.|+++- ...|+..+.. |..+.+++...++|.++...
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 5666555543332 33322 22333332 33454332 3346655543 33445677788888888754
Q ss_pred CCCCCHHHHH------HHHHHH-------HccCCHHHHHHHHHHHhhCCCCCCCCHHH---------------HHHHHHH
Q 006981 192 NVKPDRVVFN------ALITAC-------GQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMKA 243 (623)
Q Consensus 192 g~~p~~~~~~------~li~~~-------~~~g~~~~A~~~~~~m~~~~~~~~~~~~~---------------~~~ll~~ 243 (623)
-+.-=...|+ .=|+.. -+...+..|.+++++...-..|+..+..+ |..+|.
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~- 245 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK- 245 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-
Confidence 2211111221 111111 12234556666666654322222211111 323332
Q ss_pred HHHcCChH---------HHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhCC
Q 006981 244 CANAGQVD---------RAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGD--------------WEFACSVYDDMTKKG 299 (623)
Q Consensus 244 ~~~~g~~~---------~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~--------------~~~A~~l~~~m~~~~ 299 (623)
+-+.+-+. ...-+++.. .-.+.. +.+|----..+...++ -+++..+++.....-
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 11111111 011111111 111111 1222211111111111 456666666555432
Q ss_pred CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 006981 300 VIPDEVFLSALIDFAGHAG---KVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TV 374 (623)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~ 374 (623)
..-+..+|..+.+.--..- ..+....++.++...- +.| ..+|-.+++.-.+..-++.|+.+|.+..+.+..+ .+
T Consensus 324 ~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 324 LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 2224444444443211111 2445555555554432 233 3456666666666666777777777777665555 56
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 006981 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCII 451 (623)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li 451 (623)
..+++++.-||. ++..-|.++|+--.+. .+|.. --...++-+.+.++-..++.+|++....++.|| ..+|..+|
T Consensus 403 fVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 403 FVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRML 479 (656)
T ss_pred hHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHH
Confidence 666666666654 4566677777664432 23332 233555666667777777777777776655544 34566666
Q ss_pred H
Q 006981 452 G 452 (623)
Q Consensus 452 ~ 452 (623)
+
T Consensus 480 ~ 480 (656)
T KOG1914|consen 480 E 480 (656)
T ss_pred H
Confidence 5
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-05 Score=81.35 Aligned_cols=216 Identities=14% Similarity=0.068 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (623)
.-..+...+.+.|-...|..+|+++. .|.-.|.+|+..|+..+|..+..+..++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34455566666777777777776654 2556666777777777777776666653 566667766666666
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (623)
+..-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.+ +....+|-....+..+.++++.|
T Consensus 469 d~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ChHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 666666777666654321 11111111223566777777776665554 44556666666666677777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 289 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
.+.|..-....+. +...|+.+-.+|.+.++..+|...+++..+.+ .-+...|-..+....+.|.+++|.+.+.++.+
T Consensus 539 v~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 7777666554322 34566777777777777777777777666665 33445555555556666777777666666543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-05 Score=76.56 Aligned_cols=252 Identities=14% Similarity=0.108 Sum_probs=124.7
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 006981 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (623)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 216 (623)
+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 345555555555555555543 3345555555555555555555555555555442 22344444555555555555555
Q ss_pred HHHHHHHhhCCCCC----C--CCHHHHHHHHHHHHHcCChHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 217 FDVLAEMNAEVHPV----D--PDHITIGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 217 ~~~~~~m~~~~~~~----~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
++.++.-....... . ++...-.. ........+....++|-.+ ...+...|+.+...|.-.|.-.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 55555443211000 0 00000000 1111112222333333333 33333355666666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 006981 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKS- 367 (623)
Q Consensus 290 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 367 (623)
+.|+..+..... |...|+.|...++...+.++|+..|.+..+.. |+ +.+...|.-.|...|.+++|.+.|-....
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 666666655332 55666666666666666666666666665542 32 23444455556666666666665544322
Q ss_pred --C------CCCCCHHHHHHHHHHHHcCCChhhHHH
Q 006981 368 --I------KLKPTVSTMNALITALCDGDQLPKTME 395 (623)
Q Consensus 368 --~------~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (623)
. ...++...|.+|=.++.-.++.|-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 112234566666555555565554433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0002 Score=73.29 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=96.8
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006981 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (623)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (623)
+.+......+.+|+.+++.+..+ +.-..-|..+..-|+..|+++.|.++|-+. ..++-.|.+|.+.|
T Consensus 739 ieaai~akew~kai~ildniqdq----k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ----KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh----ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 33445566777777777776543 122234566777888888888888887653 24566778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (623)
+|++|.++-.+.. |.......|-+-..-.-+.|++.+|.+++-.+. .|+ ..|.+|-+.|..+..+++.+
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 8888888765543 333344555555555666777777776654321 122 24556666666666666655
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHcCCChhhHHHHHH
Q 006981 364 HMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLS 398 (623)
Q Consensus 364 ~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~ 398 (623)
+-. |+ ..|--.+..-|...|+...|..-|-
T Consensus 875 k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 875 KHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 432 22 1233333444444555555544443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00037 Score=67.94 Aligned_cols=209 Identities=7% Similarity=0.000 Sum_probs=128.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA- 212 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~- 212 (623)
..+...++.++|+.+.+++++.. +-+..+|+..-.++.+.| ++++++..++++.+.. +-+..+|+.....+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33445667888888888888763 334556776666666667 5788888888888764 3345567655444555554
Q ss_pred -HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCH---
Q 006981 213 -VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT---GDW--- 285 (623)
Q Consensus 213 -~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~--- 285 (623)
.+++..+++.+.... +.+..+|+...-++.+.|+++++++.++++.+.+ +.+..+|+.....+.+. |..
T Consensus 123 ~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 123 AANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccccc
Confidence 256777777777542 4466777777777778888888888888888876 45566776665555443 222
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 286 -EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (623)
Q Consensus 286 -~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (623)
++.+....+++...+. |...|+-+...+... +...+|.+.+.+..+.+ +.+......|++.|+.
T Consensus 199 ~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3455555555554332 455565555555542 23344555555554432 2344455555555553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.2e-05 Score=71.46 Aligned_cols=187 Identities=11% Similarity=0.004 Sum_probs=126.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC-HH
Q 006981 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PN-VH 163 (623)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~-~~ 163 (623)
+.....+..+...+...|+++.|...++.+.... +.+. .++..+..++.+.|++++|...++++.+.... +. ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677777888888999999999998887753 2222 46677788888999999999999998875311 11 12
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH
Q 006981 164 TYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (623)
Q Consensus 164 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (623)
++..+...+.+. |+.++|.+.|+++... .|+. ..+..+.... . . .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~------~~~~~---------- 166 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---L------RNRLA---------- 166 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---H------HHHHH----------
Confidence 455555555544 6788888888888765 3332 2222221110 0 0 00000
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.....+...|.+.|++++|...++...+... +.....+..+...+.+.|++++|...++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112456678899999999999999887631 234578889999999999999999998888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00056 Score=71.09 Aligned_cols=231 Identities=14% Similarity=0.187 Sum_probs=142.7
Q ss_pred HHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-C--------CCCCHHHHHHHHHHHHHc
Q 006981 70 VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-G--------LKADCKLYTTLITTCAKS 140 (623)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g--------~~~~~~~~~~li~~~~~~ 140 (623)
.+...|++|.|.+-.+.+. +-..|..+.+.|.+..+++-|.-.+..|... | -.|+ .+-..+.-.....
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 3456688899888777665 3467999999999999888887777666421 1 1222 2333344445678
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006981 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (623)
Q Consensus 141 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 220 (623)
|.+++|..+|.+-.+ |..|=..|...|.+++|+++-+.=-... =..||..-..-+-..++.+.|++.|
T Consensus 814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHH
Confidence 999999999998875 4455566788899999988765432211 1245555555555667788888777
Q ss_pred HHHh----------hCCCC-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006981 221 AEMN----------AEVHP-------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (623)
Q Consensus 221 ~~m~----------~~~~~-------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (623)
++.. .+..+ -..|...|.-...-+...|+.+.|+.+|....+ |-+++...|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 6532 11000 012223333334444556777777777766543 445556666667
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
+.++|-++-++- | |......+...|...|++.+|...|.+.
T Consensus 953 k~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 953 KTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred CchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 777766665432 1 4455556666677777777777666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.4e-05 Score=70.42 Aligned_cols=186 Identities=13% Similarity=0.064 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--H
Q 006981 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR--V 198 (623)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~ 198 (623)
.....+..+...+.+.|++++|...|+++.... |+ ..++..+...+.+.|++++|...++++.+....... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345677778888999999999999999988753 33 246778888999999999999999999876321111 1
Q ss_pred HHHHHHHHHHcc--------CCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCH
Q 006981 199 VFNALITACGQS--------GAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (623)
Q Consensus 199 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 269 (623)
++..+..++.+. |+.++|.+.|+.+... .|+. .....+... .. .. ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~a~~~~-~~---~~------~~~~-------- 166 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR----YPNSEYAPDAKKRM-DY---LR------NRLA-------- 166 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH----CCCChhHHHHHHHH-HH---HH------HHHH--------
Confidence 344455555543 6788899999888764 3432 222222111 00 00 0000
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
.....+...|.+.|++++|...+........ .| ....+..+..++.+.|+.++|..+++.+....
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1123566779999999999999999987632 22 35678899999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-05 Score=79.35 Aligned_cols=239 Identities=11% Similarity=0.083 Sum_probs=147.9
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHH
Q 006981 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (623)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (623)
+.+|-...=..+...+...|-...|..+|++.. .|.-++.+|+..|+..+|..+.....+ -+|++..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~l 459 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRL 459 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchh
Confidence 344444444455666667777777777776653 345566667777777777777666665 2566677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (623)
|..+.+......-+++|.++++..-.. .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 777777766666677777777654332 01111111223567777777777665553 3345677777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431 (623)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 431 (623)
+++++.|.+.|....... +-+...||.+-.+|.+.|+-.+|...+.+..+.. .-+...|...+-...+.|.+++|++.
T Consensus 532 lek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 777777777777766542 2345677878778888887778887777777765 33444555555556677777777777
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHH
Q 006981 432 LSQAKED-GVIPNLVMFKCIIGM 453 (623)
Q Consensus 432 ~~~~~~~-g~~p~~~~~~~li~~ 453 (623)
+.++.+. ....|..+..-++..
T Consensus 610 ~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 610 YHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHHHhhhhcccchhhHHHHHH
Confidence 7776542 111244444444433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0046 Score=66.12 Aligned_cols=302 Identities=13% Similarity=0.144 Sum_probs=137.7
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 006981 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (623)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (623)
++.+-..+..+++-.+-..+-+++++++.-.+ .++.+.-...+++-...+. +.....++.++...-|. -.+...+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa---~~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA---PDIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc---hhHHHHH
Confidence 34555566778889999999999999987443 3344444443333222111 11112222222221111 0112233
Q ss_pred HcCCChHHHHHHHHHHHHcC---------------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006981 103 ASSKDSEGAFQVLRLVQEAG---------------------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (623)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g---------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (623)
..++-+++|..+|+...-.+ --..+..|..+..+-.+.|.+.+|++-|-+. .|
T Consensus 1059 i~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dD 1132 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DD 1132 (1666)
T ss_pred hhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CC
Confidence 33444455555554331100 0011234444555544555555554444222 13
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 006981 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll 241 (623)
...|.-.++...+.|.+++-.+.+...++..-.|... +.||-+|++.+++.+..+++ . -|++.....+.
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi----~-----gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI----A-----GPNVANIQQVG 1201 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh----c-----CCCchhHHHHh
Confidence 4445555555555555555555444444433333222 23444555555444433322 1 24444444444
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321 (623)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 321 (623)
+-|...+.++.|.-+|..+ .-|..|...+...|.+..|.+--++. .+..||.-+-.+|...+.+.
T Consensus 1202 drcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhh
Confidence 4455555555554444432 23445555555555555555443322 13445555555555544443
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
.| +|--.++.....-...|+.-|-..|.+++-..+++.-.
T Consensus 1267 lA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1267 LA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 32 22222223334445556666666666666666665543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00012 Score=66.12 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=88.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (623)
+-..+...|+-+.+..+....... .+.|....+..+....+.|++..|...|.+..... ++|..+|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 334445555555555555443322 13344455556666666666666666666665543 4566666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006981 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257 (623)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 257 (623)
++.|..-|.+..+.- .-+....|.+.-.+.-.|+.+.|..++...... -..|..+-..+.-.....|+++.|.++-
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~---~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS---PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666666665542 223445555555566666666666666665542 1235555555666666666666666665
Q ss_pred HHH
Q 006981 258 KMI 260 (623)
Q Consensus 258 ~~~ 260 (623)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00056 Score=61.96 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=53.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 006981 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ---- 209 (623)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 209 (623)
...|.+.|++++|++...... +......=+..+.+..+++-|.+.+++|.+.. +..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 334455555555555444311 22222222233344455555555555554432 33344444444332
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 006981 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (623)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (623)
.+.+.+|.-+|++|..+ ..|+..+.+-...++...|++++|..+++....+.
T Consensus 186 gek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred chhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 23344555555555432 34444455545555555555555555555554444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0029 Score=63.18 Aligned_cols=355 Identities=13% Similarity=0.087 Sum_probs=193.4
Q ss_pred HhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHH
Q 006981 71 CKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAM 146 (623)
Q Consensus 71 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A 146 (623)
..+.|+++.|+.+|-.. .++|.+.|..-..++++.|++++|++=-.+-.+. .|+ ...|+....++.-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 34568899999999753 3678888998999999999999998877666654 454 67888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCH--------HHHHHHHHHHHcc-------
Q 006981 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR-SKNVKPDR--------VVFNALITACGQS------- 210 (623)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~--------~~~~~li~~~~~~------- 210 (623)
+.-|.+-++.. +.|...++-|..++... . .+.+.|..-. -.++.-++ ..|..++..+-+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999988764 34566677777776111 0 1111111000 00000011 1122222221111
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH-cCChH----HHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCC
Q 006981 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVD----RAREVYKMIHK-YNIKGTPEVYTIAINCCSQTGD 284 (623)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~-~g~~~----~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~ 284 (623)
...+...+....+... .-. .+...-..... ...+. ..........+ .....-..-...+.++..+..+
T Consensus 166 l~d~r~m~a~~~l~~~----~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGV----DEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred cccHHHHHHHHHHhcC----ccc--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 0001111111110000 000 00000000000 00000 00000000000 0000001235567788888889
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCCHHH
Q 006981 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY-------SSLMGACSNAKNWQK 357 (623)
Q Consensus 285 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~ 357 (623)
+..|.+-+....+.. -+..-++..-.+|...|.+.+....-....+.|-. ...-| ..+..+|.+.++++.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 999999998888765 25555666667788888888777776666655421 11122 223346777788999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
|...|.+.......|+. ..+....+++++......- +.|.... ...=...+.+.|++..|...+.+++
T Consensus 317 ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred HHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999887654333332 2233445566655555443 3444322 2222567889999999999999999
Q ss_pred HCCCCCCHH-HHHHHHHH
Q 006981 437 EDGVIPNLV-MFKCIIGM 453 (623)
Q Consensus 437 ~~g~~p~~~-~~~~li~~ 453 (623)
+.. |+.. .|+----+
T Consensus 386 kr~--P~Da~lYsNRAac 401 (539)
T KOG0548|consen 386 KRD--PEDARLYSNRAAC 401 (539)
T ss_pred hcC--CchhHHHHHHHHH
Confidence 864 6544 44443333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0069 Score=60.55 Aligned_cols=406 Identities=11% Similarity=0.126 Sum_probs=247.2
Q ss_pred hhhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHH
Q 006981 26 SEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (623)
Q Consensus 26 ~~~~~~~~~l~---~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~ 100 (623)
+.++.+|..|| +...++++++.++++...- |....+....++.-...++++...++|.+-. .-++..|...|+
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45677899999 4568999999999998654 4444444444444455678899999997643 346777887776
Q ss_pred HHHc-CCChHH----HHHHHHHHH-HcCCCCC-HHHHHHHHHH---------HHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006981 101 VCAS-SKDSEG----AFQVLRLVQ-EAGLKAD-CKLYTTLITT---------CAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (623)
Q Consensus 101 ~~~~-~~~~~~----A~~~~~~m~-~~g~~~~-~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 164 (623)
--.+ .++... -.+.|+... +.|+.+- -..|+.-+.. +....+++...++|.++....+..=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 5443 233322 234444433 3443332 2234444443 3344567778888888876422111112
Q ss_pred HH------HHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHccC---
Q 006981 165 YG------ALIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSG--- 211 (623)
Q Consensus 165 ~~------~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g--- 211 (623)
|+ .=|+-. -+...+..|.++++++.. +|+.....+ |-.+|.-=-..+
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 22 111111 123456778888777653 343322222 433443211111
Q ss_pred ---CH--HHHHHHHHHHhhCCCCCCCCHHHH-HHHH----HHHHHcCC-------hHHHHHHHHHHHhcCCCCCHHHHHH
Q 006981 212 ---AV--DRAFDVLAEMNAEVHPVDPDHITI-GALM----KACANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTI 274 (623)
Q Consensus 212 ---~~--~~A~~~~~~m~~~~~~~~~~~~~~-~~ll----~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~ 274 (623)
.. ....-.+++...- .+..|+.... ...+ +.+...|+ .+++..+++.....-...+..+|..
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1111222222221 1334443221 1111 22333333 5788888888766544444555655
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 006981 275 AINCCSQT---GDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGAC 349 (623)
Q Consensus 275 li~~~~~~---g~~~~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 349 (623)
+...--.. ...+.....++++... ...|+ .+|...+....+..-++.|..+|.+..+.+..+ ++.++++++.-|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 54432222 2366677777777654 33444 567778888888888999999999999988777 788889999877
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 006981 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEV 427 (623)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~ 427 (623)
| .++..-|.++|+-=...- .-+..--...+.-+...++-..|..+|++....++.|+ ...|..+|+--+.-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 6 567789999998644321 22334445677888888999999999999998877775 4679999999999999999
Q ss_pred HHHHHHHHHH
Q 006981 428 GLMLLSQAKE 437 (623)
Q Consensus 428 a~~~~~~~~~ 437 (623)
..++-+++..
T Consensus 491 i~~lekR~~~ 500 (656)
T KOG1914|consen 491 ILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHH
Confidence 9999888764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00038 Score=63.05 Aligned_cols=158 Identities=16% Similarity=0.091 Sum_probs=84.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006981 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (623)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (623)
..+-..+...|+-+....+...... ....|......++....+.|++..|...|.+..... ++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHH
Confidence 3344444555555555555444332 123333444445555566666666666666665554 555666666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (623)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (623)
+.|++++|..-|.+..+.... +...++-+.-.+.-.|+.+.|..++......+ .-|..+-..|.......|++++|.+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 666666666666665554222 23334444445555566666666666555543 2244555555555566666666665
Q ss_pred HHHH
Q 006981 361 LYEH 364 (623)
Q Consensus 361 ~~~~ 364 (623)
+-.+
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 5443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0068 Score=60.04 Aligned_cols=217 Identities=13% Similarity=0.051 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (623)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (623)
+.++...-+.+......-.|+...+...+.+......-..+..++.+..+. .....+--..-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHH
Confidence 344444444544332222344445555554443333333333333333331 11233333344455678888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006981 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (623)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 371 (623)
+.+...-.. |...+....+.+.+.++.++|.+.++.+.... |+ ....-.+..+|.+.|+..+|..+++...... +
T Consensus 330 ~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p 405 (484)
T COG4783 330 QPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-P 405 (484)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-C
Confidence 887765322 55666666777888888888888888887763 33 5566677788888888888888888776543 4
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHH
Q 006981 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED--GVIPNLVMFKC 449 (623)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~ 449 (623)
-|...|..|..+|...|+..+|..-.-+ ++...|+++.|...+....+. ...|+..-+..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~da 467 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADA 467 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 5677888888888888887777654433 455678888888887777654 23445545555
Q ss_pred HHHHH
Q 006981 450 IIGMC 454 (623)
Q Consensus 450 li~~~ 454 (623)
.|+..
T Consensus 468 ri~~~ 472 (484)
T COG4783 468 RIDQL 472 (484)
T ss_pred HHHHH
Confidence 55543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00031 Score=63.66 Aligned_cols=98 Identities=10% Similarity=0.090 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHH
Q 006981 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKN--WQKALELYEHMKSIKLKPTVSTMNA 379 (623)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~ 379 (623)
|...|..+...|...|++++|...+++..+.. +.+...+..+..+ +...|+ .++|.+++++..+... .+...+..
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~ 149 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALML 149 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHH
Confidence 33334444444444444444444444443332 1233333333332 123333 2444444444443321 13333444
Q ss_pred HHHHHHcCCChhhHHHHHHHHHH
Q 006981 380 LITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
+...+.+.|++++|+..|+++.+
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444444444444433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00041 Score=62.85 Aligned_cols=120 Identities=13% Similarity=0.139 Sum_probs=68.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 006981 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAA 323 (623)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a 323 (623)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555555554 555666666666666666666666666666655432 44445554444 244454 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (623)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (623)
.+++++..+.+ +-+..++..+...+.+.|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666666654 2345556666666666666666666666665543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.7e-05 Score=63.48 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (623)
+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+...... +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344455555666666666666655543 3455555666666666666666666666666543 3355555666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 006981 175 AGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (623)
.|+.++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0023 Score=58.90 Aligned_cols=194 Identities=12% Similarity=0.062 Sum_probs=108.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHh
Q 006981 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCAK 174 (623)
Q Consensus 96 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~ 174 (623)
.+.+..+.+..+++.|++++..-.++. +.+....+.|..+|....++..|-..|+++... .|...-|.. -...+-+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 334444455566777777776666553 335566666777777777777777777777654 344333321 2233445
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHH
Q 006981 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALIT--ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (623)
.+.+..|+++...|... |+...-..-+. .....+++..+..++++...+ .+..+.+.......+.|+++.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHHH
Confidence 67777777777666532 12211111111 123456666666666665431 223344444444566777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006981 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (623)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 301 (623)
|.+-|+...+-+--.....||.-+.. .+.++.+.|++...++.++|++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 77777776665433334556554443 3556777777777777766653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0039 Score=61.70 Aligned_cols=242 Identities=14% Similarity=0.097 Sum_probs=162.4
Q ss_pred ChhhhHHHHHHHHhcC-CHHHHHHHHHHHHH---cC-CCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC------CCCH
Q 006981 24 DVSEQLHSYNRLIRQG-RISECIDLLEDMER---KG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------NPTL 92 (623)
Q Consensus 24 ~~~~~~~~~~~l~~~g-~~~~A~~l~~~m~~---~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~ 92 (623)
..+.+..-.+.|.+.| +...-.+.|+++.. .+ -+|.-..+|- ....++.++...-++++ .++.
T Consensus 201 E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THP------lp~~RIa~lr~ra~q~p~~~~~d~~~~ 274 (484)
T COG4783 201 EQEADRIGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHP------LPEERIADLRNRAEQSPPYNKLDSPDF 274 (484)
T ss_pred HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCC------CchhHHHHHHHHHHhCCCCCCCCCccH
Confidence 3456677778888998 56666778888874 22 2221111111 22345666666666665 3566
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
..+...+.+......-..+..++....+. .-..--|..-+ .+...|++++|+..++.+...- +-|...+......+
T Consensus 275 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~ 350 (484)
T COG4783 275 QLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDIL 350 (484)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 66666666554443333333333322221 11223344333 3447889999999999988762 44666677778889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChH
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (623)
.+.++..+|.+.++++... .|+ ....-.+..++.+.|+..+|..++++.... .+.|...|..|..+|...|+..
T Consensus 351 ~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 351 LEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchH
Confidence 9999999999999999876 555 556667788999999999999999888764 3566778999999999999887
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
++..-.. .+|.-.|+++.|...+....+.
T Consensus 426 ~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 426 EALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 6665444 3456678888888888877765
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0014 Score=71.52 Aligned_cols=144 Identities=11% Similarity=0.006 Sum_probs=98.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCh
Q 006981 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 108 (623)
....+.+.+.+++++|.++.+...+.. |.....+...+.++.+.++.++|..+ .++.......++
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~ 99 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLKW 99 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccch
Confidence 333444448999999999999887766 44444444444455555554444333 444445555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
.....+...|... .-+...+..+..+|-+.|+.++|..+|+++.+.. +-|..+.|.+.-.|+.. +.++|.+++.+.
T Consensus 100 ~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 100 AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 4455555555553 3345577788888888898899999998888876 55788888888888888 888888888777
Q ss_pred HhC
Q 006981 189 RSK 191 (623)
Q Consensus 189 ~~~ 191 (623)
...
T Consensus 176 V~~ 178 (906)
T PRK14720 176 IYR 178 (906)
T ss_pred HHH
Confidence 643
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0016 Score=70.99 Aligned_cols=239 Identities=8% Similarity=0.032 Sum_probs=143.6
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006981 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (623)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (623)
+.+...|..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~--------------- 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N--------------- 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence 456778889999998999999999999877665 344 33333344466666765555444 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 006981 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (623)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (623)
++.......++.-+..+...|... .-+...+..+..+|-+.|+.++|..+++++.+-. +-|..+.|.+...|+..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh
Confidence 223333333443333333344433 2244567777888888888888888888887642 44567778888888887
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (623)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (623)
++++|..++.++..+ |...+++..+.++|.++....+. |...+..++
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~---------------- 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE---------------- 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------
Confidence 888888887776654 55556777777777777765332 222222221
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 328 QEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (623)
Q Consensus 328 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (623)
+.+... |..--..++-.+-..|-+..+++++..+++.+.+.. +.|.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 222111 112223444455555666666777777777766654 234455555555554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0014 Score=70.61 Aligned_cols=163 Identities=10% Similarity=0.043 Sum_probs=122.6
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006981 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (623)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 309 (623)
...+...+-.|.....+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|+..+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 34557778888888888999999999999888875 556677888888888999999999999888887543 5566677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 006981 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (623)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (623)
+..++.+.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|++..+.. .+....|+..+. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 7778888899999999999888743 3457788888888888999999999888887643 345556655543 2
Q ss_pred hhhHHHHHHHHHH
Q 006981 390 LPKTMEVLSDMKS 402 (623)
Q Consensus 390 ~~~A~~l~~~m~~ 402 (623)
...-..+++++.-
T Consensus 232 ~~~~~~~~~~~~~ 244 (694)
T PRK15179 232 LNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHHcCc
Confidence 3344555666543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.8e-06 Score=51.50 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC
Q 006981 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (623)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00031 Score=60.05 Aligned_cols=90 Identities=17% Similarity=0.033 Sum_probs=39.3
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006981 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (623)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (623)
...+...|++++|...|....... +.+...+..+..++.+.|++++|...|+.....+ +.+...+..+..++.+.|
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 333444444444444444443321 2233344444444444444444444444444433 334444444444444444
Q ss_pred CHHHHHHHHHHHHh
Q 006981 284 DWEFACSVYDDMTK 297 (623)
Q Consensus 284 ~~~~A~~l~~~m~~ 297 (623)
++++|...|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0021 Score=69.36 Aligned_cols=236 Identities=10% Similarity=0.094 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHHHHcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006981 126 DCKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (623)
++.....+=.+.+..|..++| .+++.+..+ ++....+-....+++.-...... ..+.+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 344444444556667777766 455555542 33333333333333333333322 2355688888999
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006981 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (623)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (623)
....+.|..++|..+++...+. .|| ......+...+.+.+++++|....++....+ +.+......+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999863 566 4566778889999999999999999999987 777888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (623)
++++|..+|++....+.. +..++..+...+-..|+.++|...|+...+.. .+...-|+.++ +++..-...++
T Consensus 169 ~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 169 QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALR 240 (694)
T ss_pred chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHH
Confidence 999999999999985433 57888899999999999999999999998763 34445555544 33344455666
Q ss_pred HHHhCC----CCCCHHHHHHHHHHHHcC
Q 006981 364 HMKSIK----LKPTVSTMNALITALCDG 387 (623)
Q Consensus 364 ~m~~~~----~~~~~~~~~~li~~~~~~ 387 (623)
++.-.+ ..-...+...+|.-|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 654332 222334455566656543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0059 Score=55.58 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=53.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 006981 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 391 (623)
+..+.+.|.+.++.|.+-. +..+.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+.+..++...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHH
Confidence 3444445555555444432 23333333333322 33455555555555442 2355555555555555555666
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 006981 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV-GLMLLSQAK 436 (623)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~-a~~~~~~~~ 436 (623)
+|..++++.+.+. .-+..|...++-+-...|...+ ..+.+.++.
T Consensus 225 eAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 225 EAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 6666555555442 2234444444444444444322 233344444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=7e-06 Score=50.75 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (623)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00043 Score=58.67 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (623)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (623)
...+...+...|++++|.+.|+.+...+ +.+...|..+...+.+.|++++|...+++....+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444444555555555555555554432 2344455555555555555555555555544432 2234444444445555
Q ss_pred cCCHHHHHHHHHHHhh
Q 006981 210 SGAVDRAFDVLAEMNA 225 (623)
Q Consensus 210 ~g~~~~A~~~~~~m~~ 225 (623)
.|+.++|.+.|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.1e-05 Score=49.53 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC
Q 006981 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (623)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.5e-05 Score=48.79 Aligned_cols=33 Identities=45% Similarity=0.794 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (623)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666665554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00045 Score=58.56 Aligned_cols=108 Identities=9% Similarity=0.120 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
.+......+...+...|++++|.+.++.+...+ +.+...+..+...+.+.|++++|...++...+.+ +.+..++..+.
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 344556667777888899999999999988765 5577888889999999999999999999888765 55677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (623)
..|...|++++|...|+...+. .|+...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 8999999999999999988876 45544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.064 Score=57.91 Aligned_cols=183 Identities=12% Similarity=-0.011 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006981 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (623)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 256 (623)
+...|+..|-+..+.. ..=...|..|...|+..-+...|.+.|....+-+ ..|........+.|++..+++.|..+
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccccHHHHHHH
Confidence 3566666665555442 1124567777777777777778888887775432 23455666777888888888888777
Q ss_pred HHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 257 YKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 257 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
.-..-+.. +.- ...|....-.|.+.++...|..-|+...+..+. |...|..+.++|.+.|++..|.++|.+.....
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 33322221 111 122333444566777788888888877776554 77778888888888888888888887776543
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 335 ISVGI-ISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 335 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
|+. ..---...+-+..|.+.+|...+..+..
T Consensus 627 --P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 --PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred --cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 321 1111222334567778888877776653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00093 Score=66.54 Aligned_cols=125 Identities=16% Similarity=0.113 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 006981 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (623)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 244 (623)
-.+|+..+...++++.|+.+|+++.+.. |+. ...+++.+...++-.+|.+++.+.... .+.+...+..-...+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~---~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE---NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 3455556666777888888888877663 443 334666666677777777777777653 233455555556667
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
.+.++++.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77777777777777777654 44556777777777777777777777776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00053 Score=68.51 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=87.4
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHH
Q 006981 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (623)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (623)
.+.+......+++.+....+++.+..++.+..........-..|..++++.|.+.|..+.+..+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34566666677777777777777777777776542222222235567788888888888888888777778888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006981 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (623)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (623)
|.|++.+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887777666655666666666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00061 Score=67.84 Aligned_cols=126 Identities=10% Similarity=0.061 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
..-..+++.+...++++.|+.+++++.+.. |+. ...++..+...++-.+|.+++.+..+.. +.+..........+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556677777888999999999988764 543 3447777777888888888888888653 44677777777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
.+.++.+.|+.+.+++... .|+ ..+|..|..+|.+.|+++.|+..++.+..
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8889999999999988876 444 45888999999999999999988887754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.6e-05 Score=45.92 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHCC
Q 006981 376 TMNALITALCDGDQLPKTMEVLSDMKSLG 404 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 404 (623)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0033 Score=53.91 Aligned_cols=86 Identities=20% Similarity=0.204 Sum_probs=37.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR--VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (623)
..+...|++++|...|+........|+. .....|...+...|++++|+..++..... ......+......|.+.
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~----~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE----AFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc----chHHHHHHHHHHHHHHC
Confidence 4444455555555555555444311111 12222344444455555555555443211 12223344444555555
Q ss_pred CChHHHHHHHHH
Q 006981 248 GQVDRAREVYKM 259 (623)
Q Consensus 248 g~~~~A~~~~~~ 259 (623)
|+.++|...|+.
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 555555555543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00062 Score=68.04 Aligned_cols=121 Identities=16% Similarity=0.074 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006981 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (623)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (623)
+.+......+++.+....+.+++..++.+.... ....-..|..++|+.|.+.|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555555555543 111112233455666666666666666665555556666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
.|++.+.+.|++..|.++...|..++...+..|+.-.+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666655555544444444444443443333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0035 Score=53.79 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=9.0
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 006981 242 KACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~ 262 (623)
..+...|++++|...|+.+..
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 333444444444444444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.4e-05 Score=45.15 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (623)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00098 Score=52.10 Aligned_cols=77 Identities=17% Similarity=0.390 Sum_probs=46.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006981 97 MLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSG--------KVDAMFEVFHEMVNAGIEPNVHTYGA 167 (623)
Q Consensus 97 ~li~~~~~~~~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (623)
..|.-|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 677777777777665542 12234455555555555566666655
Q ss_pred HHHHHH
Q 006981 168 LIDGCA 173 (623)
Q Consensus 168 li~~~~ 173 (623)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.052 Score=49.25 Aligned_cols=185 Identities=16% Similarity=0.158 Sum_probs=93.5
Q ss_pred ChHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 006981 107 DSEGAFQVLRLVQE---AG-LKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGALIDGCAKAGQVAK 180 (623)
Q Consensus 107 ~~~~A~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~ 180 (623)
+.++.++++..+.. .| ..++.. .|-.++-+....|+.+.|...++.+...- |.+. +-..-.-.+-..|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhh
Confidence 45555555555542 22 334433 34445555556666666666666665542 2221 11111112334566666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006981 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (623)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (623)
|+++++.+.+.+ +.|.+++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 666666666654 444555544444444445555555555555542 4556666666666666666666666666666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 006981 261 HKYNIKGTPEVYTIAINCCSQTG---DWEFACSVYDDMTKK 298 (623)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~ 298 (623)
.-.. |.++-.+..+...+.-.| +.+-+.+.|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5543 333333444444333222 334455555555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.053 Score=49.21 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (623)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (623)
.|++++|.++++.+.+.+ +.|..++-.-+...-..|+.-+|++-+.+..+.-. .|...|.-+-..|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344444444444444443 33333333333333333333344433333333211 1333333333333333333333333
Q ss_pred HHHH
Q 006981 327 LQEA 330 (623)
Q Consensus 327 ~~~~ 330 (623)
++++
T Consensus 177 lEE~ 180 (289)
T KOG3060|consen 177 LEEL 180 (289)
T ss_pred HHHH
Confidence 3333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=51.53 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVV 199 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~ 199 (623)
|....|.-+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556666677999999999999999998 889999999998877643 24467788888888888888888
Q ss_pred HHHHHHHHHc
Q 006981 200 FNALITACGQ 209 (623)
Q Consensus 200 ~~~li~~~~~ 209 (623)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0035 Score=51.49 Aligned_cols=21 Identities=19% Similarity=0.080 Sum_probs=8.3
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 006981 203 LITACGQSGAVDRAFDVLAEM 223 (623)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m 223 (623)
+..++.+.|+++.|.+.|+.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHH
Confidence 333333334444444444333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.21 Score=53.61 Aligned_cols=221 Identities=10% Similarity=0.032 Sum_probs=116.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCChHH
Q 006981 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEG 110 (623)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~ 110 (623)
-++..+++..|++...++.++- |.......+-+-...+.|..++|..+++.. ...|..|...+-..|...++.++
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 3456777777777777777665 222222221122234556667777666543 23466677777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------
Q 006981 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--------- 177 (623)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--------- 177 (623)
|..++++.... -|+......+..+|.+.+++.+ |.++++.. +.+...+-+.++.+.+.-.
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-----pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-----PKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CcccchHHHHHHHHHHhccCCcccccch
Confidence 77777777654 4556666666777777766654 34444322 2344444444454443211
Q ss_pred -HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 006981 178 -VAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (623)
Q Consensus 178 -~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 255 (623)
..-|.+.++.+.+.+ -.-+..-...-...+-..|.+++|..++..-... .-...+...-+.-+..+...+++.+..+
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~-~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAE-KLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHhcChHHHHH
Confidence 234555556655443 1111222222233344556677777766322221 0112222333344555566666666666
Q ss_pred HHHHHHhcC
Q 006981 256 VYKMIHKYN 264 (623)
Q Consensus 256 ~~~~~~~~~ 264 (623)
+-.++...+
T Consensus 248 l~~~Ll~k~ 256 (932)
T KOG2053|consen 248 LSSRLLEKG 256 (932)
T ss_pred HHHHHHHhC
Confidence 666665554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0022 Score=49.83 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=41.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (623)
+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3344444455555555555544432 2223344444444555555555555555544432 2223344444444555555
Q ss_pred HHHHHHHHHHHH
Q 006981 178 VAKAFGAYGIMR 189 (623)
Q Consensus 178 ~~~A~~~~~~m~ 189 (623)
.+.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.26 Score=52.84 Aligned_cols=222 Identities=12% Similarity=0.055 Sum_probs=156.1
Q ss_pred hHHHHHHHHHhhhCC--CCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 006981 74 QKAIKEAFRFFKLVP--NPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (623)
Q Consensus 74 ~~~~~~A~~~~~~~~--~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 149 (623)
.+++..|++...+.. .||.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 466777877776654 34443 4444444 56789999999999888766533 888999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHH
Q 006981 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA----------VDRAFDV 219 (623)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~~ 219 (623)
|+..... .|+......+..+|++.+.+.+-.++=-+|.+. ++-+...|-++++...+.-. ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9999876 688888888999999988876544444444332 34456666677776655421 3346666
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
++.+..++ |---+..-...-...+...|++++|..++. ...+.-...+...-+.-+..+...++|.+..++-.++...
T Consensus 177 ~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 177 VQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 77776653 311222222333445677899999999994 4444444445566677888899999999999999999988
Q ss_pred CCC
Q 006981 299 GVI 301 (623)
Q Consensus 299 ~~~ 301 (623)
|..
T Consensus 256 ~~D 258 (932)
T KOG2053|consen 256 GND 258 (932)
T ss_pred CCc
Confidence 753
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0028 Score=56.15 Aligned_cols=116 Identities=19% Similarity=0.233 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006981 89 NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (623)
Q Consensus 89 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 163 (623)
..|-.+|..++..+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3455555555555543 35666666677777777777777777777776543 2211 011111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHH
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-VDRAFDVLAEM 223 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m 223 (623)
.- .-.+.+-|++++++|...|+-||..++..++..+++.+. ..+..++.-.|
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 00 123345677777777777777777777777777776654 23333433333
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0042 Score=48.11 Aligned_cols=7 Identities=29% Similarity=0.259 Sum_probs=2.5
Q ss_pred CHHHHHH
Q 006981 284 DWEFACS 290 (623)
Q Consensus 284 ~~~~A~~ 290 (623)
++++|.+
T Consensus 49 ~~~~a~~ 55 (100)
T cd00189 49 KYEEALE 55 (100)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.008 Score=49.31 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=50.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCHHHHHHHHH
Q 006981 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK--GTPEVYTIAIN 277 (623)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~ 277 (623)
+..+...+.+.|++++|.+.|..+.....+-......+..+..++.+.|+++.|...|+.+...... ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444455555666666666666655431110111223444555566666666666666665543211 12344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006981 278 CCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 278 ~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.+.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 566666666666666665554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0041 Score=55.14 Aligned_cols=116 Identities=19% Similarity=0.312 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006981 124 KADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (623)
Q Consensus 124 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (623)
..|-.+|..+++.+.+. |.++-....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 45677888888887754 6677777888888888888899999988887765 3332 11112111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Q 006981 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMI 260 (623)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~ 260 (623)
..-| -.+-+-|++++++|.. .|+-||..++..+++.+++.+.. .+..++.--|
T Consensus 112 -----F~hy--p~Qq~c~i~lL~qME~--~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 112 -----FMHY--PRQQECAIDLLEQMEN--NGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred -----hccC--cHHHHHHHHHHHHHHH--cCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1111 2345778999999987 58999999999999999998863 3444444434
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.25 Score=51.29 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHH
Q 006981 413 SILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCI 450 (623)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~l 450 (623)
..|..--...|.++.|.+.--.+.+. .+-|...+|+.|
T Consensus 1025 milAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 1025 MILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred HHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHH
Confidence 33334445578888887766555543 566666677654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0059 Score=58.78 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 006981 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 289 (623)
.+.|.++|+...+. +..+...|...++.+.+.++.+.|+.+|++.... +.++ ...|...+..=.+.|+.+.+.
T Consensus 52 ~~~A~~Ife~glk~---f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~ 127 (280)
T PF05843_consen 52 PKRARKIFERGLKK---FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVR 127 (280)
T ss_dssp HHHHHHHHHHHHHH---HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHH
T ss_pred HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33344444444432 2233334444444444444444444444444333 1111 135555555555555555555
Q ss_pred HHHHHHHh
Q 006981 290 SVYDDMTK 297 (623)
Q Consensus 290 ~l~~~m~~ 297 (623)
++.+++.+
T Consensus 128 ~v~~R~~~ 135 (280)
T PF05843_consen 128 KVEKRAEE 135 (280)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0073 Score=58.15 Aligned_cols=131 Identities=15% Similarity=0.241 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006981 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (623)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 277 (623)
.+|..+++..-+.+..+.|.++|.+..+. .....+++...+++. |...++.+.|.++|+...+. ++.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 46777888888888888888888888753 223334333333332 23346667788888888776 4667788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 278 CCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 278 ~~~~~g~~~~A~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
.+.+.++.+.|..+|++.... .|.. ..|...++.=.+.|+++....+.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888765 2333 47888888888888888888888888775
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.066 Score=51.77 Aligned_cols=151 Identities=12% Similarity=0.141 Sum_probs=83.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHH
Q 006981 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKS----IKLKPT--VSTMNALIT 382 (623)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~~~~~~--~~~~~~li~ 382 (623)
.+..|...|++..|-..+..+ ...|.+. |++++|.+.|++..+ .+ .+. ..++..+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 344566777777765555544 3345566 778888887776643 12 111 234566777
Q ss_pred HHHcCCChhhHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHH
Q 006981 383 ALCDGDQLPKTMEVLSDMKSLGLC-----PNTI-TYSILLVACERKDDVEVGLMLLSQAKED--GVIPN--LVMFKCIIG 452 (623)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~p~--~~~~~~li~ 452 (623)
.+.+.|++++|.++|++....-.. .+.. .|...+-.+...|++..|.+.+++.... ++..+ ......||+
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 888999999999999988764322 2222 2333344667789999999999988753 34333 233455566
Q ss_pred HHHhcHHHHHHhhHhhhhccCCCccc
Q 006981 453 MCSRRYEKARTLNEHVLSFNSGRPQI 478 (623)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~~~~~~~ 478 (623)
+|-. .....+.+++..|+.+...+
T Consensus 244 A~~~--~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 244 AYEE--GDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHT--T-CCCHHHHCHHHTTSS---
T ss_pred HHHh--CCHHHHHHHHHHHcccCccH
Confidence 5432 01122344555566655443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0052 Score=51.97 Aligned_cols=82 Identities=13% Similarity=0.060 Sum_probs=43.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCChHHHHH
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQ 113 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~ 113 (623)
..|++++|..+|+-+..-+ |++..+...++..+...|++.+|+..|... .+.|+..+-.+...+...|+.+.|.+
T Consensus 47 ~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred HCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 5566666666666555555 455555555555555555555555555542 23344445555555555555555555
Q ss_pred HHHHHHH
Q 006981 114 VLRLVQE 120 (623)
Q Consensus 114 ~~~~m~~ 120 (623)
.|+....
T Consensus 125 aF~~Ai~ 131 (157)
T PRK15363 125 ALKAVVR 131 (157)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.012 Score=58.99 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=53.9
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (623)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (623)
.+...|+++.|++.|+++.+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3445566666666666666554 3445566666666666666666666666666543 2345556666666666666666
Q ss_pred HHHHHHHHHhC
Q 006981 181 AFGAYGIMRSK 191 (623)
Q Consensus 181 A~~~~~~m~~~ 191 (623)
|+..|++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.012 Score=58.75 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=36.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHH
Q 006981 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (623)
..|++++|++.|.++.+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3344444444444444432 2233344444444444444444444444444332 1233344444444444444444444
Q ss_pred HHHHHHH
Q 006981 396 VLSDMKS 402 (623)
Q Consensus 396 l~~~m~~ 402 (623)
.|++.++
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.017 Score=48.90 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=44.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (623)
+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|....... +-|...+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 3334444555555555555554433 2233344445555555555555555555555443 2344445555555555555
Q ss_pred HHHHHHHHHHHH
Q 006981 178 VAKAFGAYGIMR 189 (623)
Q Consensus 178 ~~~A~~~~~~m~ 189 (623)
.+.|.+.|+..+
T Consensus 119 ~~~A~~aF~~Ai 130 (157)
T PRK15363 119 VCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0011 Score=50.77 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 006981 352 AKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGL 429 (623)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 429 (623)
.|+++.|..+++++.+.... ++...|..+..+|.+.|++++|+.++++ .+ ..|+. .....+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666666666544321 1233344456666666666666666655 21 12222 22233345566666666666
Q ss_pred HHHHH
Q 006981 430 MLLSQ 434 (623)
Q Consensus 430 ~~~~~ 434 (623)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66553
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0013 Score=50.24 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (623)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444555555554443211 1222233344445555555555555544 1111 11122222334444455555555544
Q ss_pred HH
Q 006981 185 YG 186 (623)
Q Consensus 185 ~~ 186 (623)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.03 Score=49.61 Aligned_cols=93 Identities=11% Similarity=0.088 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (623)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677777788888999999999988876543222 3577788888888999999999888888753 3345666677
Q ss_pred HHHHHhcCCHHHHHHH
Q 006981 169 IDGCAKAGQVAKAFGA 184 (623)
Q Consensus 169 i~~~~~~g~~~~A~~~ 184 (623)
...+...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7777777775554433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.04 Score=48.82 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555554443321111 23444444444444444444444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.19 Score=47.11 Aligned_cols=177 Identities=9% Similarity=-0.018 Sum_probs=98.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 316 (623)
....+.+.|++++|.+.|+.+.... +.+...- -.+..+|.+.+++++|...+++..+....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444556677777777777776653 2222322 34556667777777777777777765332222233333333221
Q ss_pred --cC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 317 --AG---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376 (623)
Q Consensus 317 --~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (623)
.+ + ...|...|+. ++.-|-...-..+|...+..+... -...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~---------------li~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSK---------------LVRGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHH---------------HHHHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 00 1 1223333333 333333344455555554444320 0111
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 377 MNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
--.+..-|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|.++...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 124455688888888888888888864 222345566677788888999888888776553
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.59 Score=48.75 Aligned_cols=59 Identities=8% Similarity=0.048 Sum_probs=33.6
Q ss_pred HHHHHHH--HHHHHcCCChhhHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 374 VSTMNAL--ITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLL 432 (623)
Q Consensus 374 ~~~~~~l--i~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (623)
...|..| .+-....|.++.|++.--.+.+ ..+-|....|+.+.-+.+....+...-+.|
T Consensus 1019 AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1019 AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 3344444 4445567888888876544443 235677777877665544444444443444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0078 Score=55.93 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 006981 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (623)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 150 (623)
.+++.+|+..|.+.. +.|.+-|..-..+|++.|.++.|++-.+..+..+ +.-..+|..|-.+|...|++++|.+.|
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 345555555554432 3455555555555555555555555555555432 222445555556666666666666655
Q ss_pred HHHHHCCCCCCHHHHHHHHH
Q 006981 151 HEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~ 170 (623)
++.++. .|+-.+|-.=+.
T Consensus 173 kKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 173 KKALEL--DPDNESYKSNLK 190 (304)
T ss_pred Hhhhcc--CCCcHHHHHHHH
Confidence 555543 444444443333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.16 Score=47.73 Aligned_cols=58 Identities=10% Similarity=0.004 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 006981 344 SLMGACSNAKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (623)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (623)
.+...|.+.|.+..|..-|+.+.+.- .+........++.+|...|..++|.+....+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45566778888888888888777531 12233455567788888888888877766554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.29 Score=44.80 Aligned_cols=144 Identities=14% Similarity=0.140 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----
Q 006981 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL---- 345 (623)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 345 (623)
.+.+.++..+.-.|.+.-...++.+..+.....+....+.+.+.-.+.|+.+.|...|++..+..-..|..+.+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3456667777777777777888888877765667777788888888888888888888877665333333333333
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 346 -MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (623)
Q Consensus 346 -i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (623)
...|.-.+++..|...+.++.... ..|....|.-.-++.-.|+..+|++.++.|... .|...+-.+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 334556777888888887777654 235555554444444578888888888888874 45555544433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.055 Score=56.70 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
+...|.++.......|++++|...++++.+. .|+...|..+...+...|+.++|...+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455655555555567777777777777664 46666677777777777777777777777665
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.003 Score=45.87 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 006981 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (623)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (623)
|++.|++++|+++|+++.... |.+..+...++.++...|++++|.+.++.+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788888888888888777 5666666677777777777777777777765
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.019 Score=50.68 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (623)
++..+...+...|++++|...++....
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.33 Score=44.43 Aligned_cols=134 Identities=10% Similarity=0.005 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH---
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL--- 168 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--- 168 (623)
....+.+++.+...|.+.-...++....+...+.++.....|.+.-.+.|+.+.|...|+...+..-..|..+.+.+
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 34566777777788888888888888888776777888888888888889999998888877653323343334333
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 006981 169 --IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 169 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (623)
...|.-.+++..|...|.+..... +.|++.-|.-.-+..-.|+..+|.+.++.|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334555677888888888777654 334455454444444567888888888888764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.023 Score=50.18 Aligned_cols=81 Identities=9% Similarity=0.024 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
...|..+...+...|++++|+..|+........+ ...++..+...+...|++++|++.++...... +....+++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445666666666777777777777776543222 12466667777777777777777777766542 22344455555
Q ss_pred HHHH
Q 006981 170 DGCA 173 (623)
Q Consensus 170 ~~~~ 173 (623)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.095 Score=54.98 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (623)
..|.++.-.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+.+..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444455555555555555442 344445555555555555555555555444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0052 Score=44.59 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
.|++++|+++|+.+.+.. +-+...+..+..+|.+.|++++|.++++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444444432 223444444444444444444444444444443
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.59 Score=45.68 Aligned_cols=109 Identities=12% Similarity=0.101 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (623)
+.+..|.-+...|+...|.++-.+. -.||...|-..+.+++..+++++-..+-.. +-++.-|-.++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455566667766666664443 135777777777777777777766554321 123456677777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 006981 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (623)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (623)
+.|+..+|......+. +..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777776665521 13456666777777777665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.068 Score=43.59 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=24.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 171 GCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555555555555554443322 12233344444445555555555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.12 Score=49.99 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHh
Q 006981 248 GQVDRAREVYKMIHKY----NIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-----PDEV-FLSALIDFAGH 316 (623)
Q Consensus 248 g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-----p~~~-~~~~li~~~~~ 316 (623)
|+++.|.+.|++..+. +.+ .-..++..+...+.+.|++++|.++|++....... .+.. .+...+-.+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 5556666555554332 100 00123445555566666666666666665543221 1111 11122223344
Q ss_pred cCCHHHHHHHHHHHHH
Q 006981 317 AGKVEAAFEILQEAKN 332 (623)
Q Consensus 317 ~g~~~~a~~~~~~~~~ 332 (623)
.|+...|...++....
T Consensus 209 ~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 209 MGDYVAARKALERYCS 224 (282)
T ss_dssp TT-HHHHHHHHHHHGT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5555555555555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.12 Score=42.24 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=55.6
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHH
Q 006981 100 SVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCA 173 (623)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~ 173 (623)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++.... .|+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence 445566777777777777777765543 335556667777777777777777777654 232 122222333556
Q ss_pred hcCCHHHHHHHHHHHHh
Q 006981 174 KAGQVAKAFGAYGIMRS 190 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~ 190 (623)
..|+.++|++.+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 67777777777765543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.57 Score=45.87 Aligned_cols=176 Identities=14% Similarity=0.079 Sum_probs=105.5
Q ss_pred CCHHHHHHHH-HHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006981 232 PDHITIGALM-KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC--CSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308 (623)
Q Consensus 232 ~~~~~~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~ 308 (623)
|.-.++..+- .++...|+.++|..+--.+.+.+- . ..+...+++ +.-.++.+.|...|.+-+..+ |+...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-T--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-c--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 4434444332 455667888888887777766552 1 233333333 334567788888888777654 4433211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHH
Q 006981 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALC 385 (623)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~ 385 (623)
......+.+..+.+.| +-..+.|++..|.+.+.+.+.. +..++...|.-......
T Consensus 241 ----------~~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 241 ----------SASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred ----------hHhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 1122223333333433 2345788888888888887753 34556666777777788
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHC
Q 006981 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
+.|+..+|+.--++..+ .|..-.-.+ ..++...+++++|.+-++...+.
T Consensus 299 rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999888777764 233222222 23445578888888888887764
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.029 Score=52.31 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=60.0
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 006981 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (623)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 216 (623)
+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+..+... +--..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 345666666666666666653 3355556666666666666666666666655542 11234566666666666666666
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 006981 217 FDVLAEMNAEVHPVDPDHITIGALMKAC 244 (623)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 244 (623)
.+.|.+.+. +.|+..+|..=+...
T Consensus 169 ~~aykKaLe----ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE----LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc----cCCCcHHHHHHHHHH
Confidence 666666553 456655655544433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.84 Score=44.63 Aligned_cols=107 Identities=10% Similarity=0.028 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (623)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (623)
+.+..|.-+...|....|.++-.+. . -|+...|..-+.+|+..+++++-.++... +..+.-|...+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 4555566667778888777765543 2 36788888888999999998877765432 234577888888888
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (623)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (623)
+.|+..+|..+..++ + + ..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHH
Confidence 889888888887762 1 1 33445566777777765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.24 Score=50.98 Aligned_cols=53 Identities=9% Similarity=0.111 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
+...+..-+-+...+..|-++|..|-+. .++++.....++|.+|..+-+...+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3334444444555666677777766432 2456666777777777777666554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.13 Score=52.95 Aligned_cols=214 Identities=14% Similarity=0.152 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCC
Q 006981 125 ADCKLYTTLITTCAKSGKVDAMFEVF---------HEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNV 193 (623)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 193 (623)
|..+.+.+-+-.|...|.+++|.++- +.+-.. ..+..-++..=.+|.+-.+ +-+.+.-+++++++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 34444555566677777777775542 111111 1123334555556666554 3445555677888887
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHH------------HHHH
Q 006981 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------KMIH 261 (623)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~------------~~~~ 261 (623)
.|+... +...++-.|.+.+|-++|.+--.+ +-.+.+|.....++.|.++. ++-.
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e-----------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA 697 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKRSGHE-----------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA 697 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHHcCch-----------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 777665 344566678888888888764321 12233333333444444433 2111
Q ss_pred h--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----H-HhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 262 K--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDD-----M-TKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 262 ~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-----m-~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
+ +++... .+....+...|..++|..+..+ | .+-+- ..+..+...+...+-+...+..|-++|..|
T Consensus 698 ~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 698 DWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred HHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 1 111111 1223344455665555544311 1 11111 123445555555555666777777787766
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
-.. .++++.....+++.+|..+-+...+
T Consensus 774 gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 774 GDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred ccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 432 3567777788888888888777665
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.097 Score=49.12 Aligned_cols=100 Identities=12% Similarity=0.049 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHH
Q 006981 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG---QVAKAFGAYGIMRSKNVKPDRVVF 200 (623)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~ 200 (623)
+-|...|-.|...|...|+.+.|...|....+.. .+|...+..+..++.... ...++..+|+++.... +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4456666666666666666666666666665542 334444444444433322 2445666666666553 2344444
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 201 NALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
..|...+...|++.+|...++.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4455566666666666666666665
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.013 Score=41.96 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=23.6
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 136 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
.+.+.|++++|.+.|+++.+.. +-+...+..+..++.+.|++++|...|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444432 2233444444444444444444444444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.015 Score=41.65 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=27.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006981 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (623)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (623)
..+.+.|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555443 22444555555555555555555555555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.58 Score=42.66 Aligned_cols=167 Identities=11% Similarity=0.059 Sum_probs=81.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--
Q 006981 242 KACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-- 317 (623)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-- 317 (623)
..+...|++++|...|+.+..... +-...+.-.++.++.+.|++++|...+++..+.-..-...-+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 344556666666666666655421 1123344455666666666666666666665542211111122222222111
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 318 -----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 318 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
+...+|.. .+..++.-|-......+|...+..+.+. =...--.+..-|.+
T Consensus 93 ~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYK 153 (203)
T ss_dssp HHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHC
T ss_pred CccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 11122222 3344444455555566666655555421 01111234566788
Q ss_pred CCChhhHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 006981 387 GDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGL 429 (623)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~ 429 (623)
.|.+..|..-++.+++. -|+. .....++.++.+.|..+.+.
T Consensus 154 ~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88888888888887775 3442 34566677777888776443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.018 Score=41.83 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 154 (623)
+.+|..+...+...|++++|+..|++..+.. +.+...|..+..++.+.| ++++|++.+++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3445555555555555555555555555443 233444555555555555 4555555555444
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.11 Score=50.38 Aligned_cols=264 Identities=15% Similarity=0.068 Sum_probs=137.1
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHH--HC--CC-CCCHHHHHHHHHHH
Q 006981 102 CASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMV--NA--GI-EPNVHTYGALIDGC 172 (623)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~--~~--g~-~~~~~~~~~li~~~ 172 (623)
+++.|+......+|+..++.| ..|. .+|..|.++|.-.+++++|++.+..=+ .+ |- .-...+...|-+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 678888888888888888877 3343 346667777777888888887654211 10 00 00111222333344
Q ss_pred HhcCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHHccCC--------------------HHHHHHHHHHHhhCC
Q 006981 173 AKAGQVAKAFGAYGI----MRSKNVK-PDRVVFNALITACGQSGA--------------------VDRAFDVLAEMNAEV 227 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~----m~~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~~ 227 (623)
--.|.+++|+-...+ ..+.|-. .....+..+...|...|+ ++.|.++|.+-.+-.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445666655533221 1111100 012334445555544332 223333333211100
Q ss_pred --CC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 006981 228 --HP-VDPDHITIGALMKACANAGQVDRAREVYKMIHK----YNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-- 297 (623)
Q Consensus 228 --~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-- 297 (623)
.+ --..-..|..|...|.-.|+++.|+...+.-.. .|- ......+..+.+++.-.|+++.|.+.++.-..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 00 001112344455555556777777776654322 111 11123566677777777888888777765432
Q ss_pred --CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 298 --KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-----GISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 298 --~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
.|- .....+..+|...|.-..++.+|+.++.+-... ...-....+.+|..+|...|..++|+...+.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 221 112344556666676667777777777653221 112235667777777777777777776665543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.023 Score=41.29 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMT 296 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~ 296 (623)
+|..+...+...|++++|+..|++..+.+ +.+...|..+..+|.+.| ++++|++.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 44444444455555555555555554443 334444444555555554 3555555544443
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.67 Score=42.23 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHcCCChhhH
Q 006981 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVS----TMNALITALCDGDQLPKT 393 (623)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A 393 (623)
+...|.+.|.+..|..-++.+.+. -|+.. ..-.++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455677777777777777777654 23322 334556666666666533
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.089 Score=49.81 Aligned_cols=96 Identities=19% Similarity=0.118 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 006981 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (623)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l 240 (623)
|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|..+......-+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334445555555555555543 2221 2333444455555555555555555543211111111222223
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 006981 241 MKACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~ 262 (623)
...+...|+.+.|..+|+.+.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444445555554444443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.29 Score=46.09 Aligned_cols=98 Identities=17% Similarity=0.086 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhhHHHHHHHHHHCCCCC-CHHHH
Q 006981 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP-NTITY 412 (623)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p-~~~t~ 412 (623)
-|...|-.|...|...|+.+.|..-|.+..+.. .+|...+..+..++.... ...++..+|+++... .| |..+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 345555555555555555555555555544432 234444444443332211 133455555555543 33 23333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 413 SILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
.-|...+...|++.+|...|+.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3344455555555555555555555
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.83 Score=39.64 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCCCCHHHH
Q 006981 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITI 237 (623)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ 237 (623)
-|++.---.|..+..+.|+..+|...|++...--+.-|....-.+.++....++...|...++++.+-.. +-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 4555555566666777777777777777666543444556666666666666777777777666554210 11233 33
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
-.+.+.+...|.+.+|+.-|+...+. -|+...--.....+.+.|+.+++.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 34556666667777677666666654 233333222333444555544443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.16 Score=48.18 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHH
Q 006981 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFN 201 (623)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~ 201 (623)
..|...+....+.|++++|...|+.+.+. .|+. .++..+...|...|++++|...|+.+.+.-. +.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555554445567777777777777665 2332 3556666667777777777777777765410 11133344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhC
Q 006981 202 ALITACGQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~ 226 (623)
.+...+...|+.++|.++|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566677777777777776653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.051 Score=46.58 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 131 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
..++..+...|++++|.++...+.... +-|...|..+|.+|...|+...|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444555555555555555555443 334455555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.064 Score=45.98 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-----AGIEPNVHTY 165 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 165 (623)
.....++..+...|+++.|..+.+.+.... |.|...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345667778889999999999999999886 77889999999999999999999999998753 5888877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.19 Score=41.47 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHH
Q 006981 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAIN 277 (623)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~ 277 (623)
++.|+..+..+++.+|+..|++..|.++.+...+. +++.+..+|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34455555555555555555555555555444322 33333444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.17 Score=49.22 Aligned_cols=266 Identities=18% Similarity=0.062 Sum_probs=151.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHH--h--CCCC-CCHHHHHHHHH
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKAGQVAKAFGAYGIMR--S--KNVK-PDRVVFNALIT 205 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~--~--~g~~-p~~~~~~~li~ 205 (623)
.-+++.|+......+|+..++.|.+ |.. .|..|-++|.-.+++++|++....=+ . .|-+ -...+...|-.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3578999999999999999998843 443 46667777888888999987653211 0 0100 01111122333
Q ss_pred HHHccCCHHHHHHHHHHH----hhCCCCCCCCHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH
Q 006981 206 ACGQSGAVDRAFDVLAEM----NAEVHPVDPDHITIGALMKACANAGQ--------------------VDRAREVYKMIH 261 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~~~ 261 (623)
.+--.|.+++|.-.-.+- .+-+.. ......+..+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDr-v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDR-VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHH-HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 333344555554322111 000000 0112234445555544432 233444443211
Q ss_pred ----hcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 262 ----KYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (623)
Q Consensus 262 ----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (623)
+.|- -.....|..|.+.|.-.|+++.|+...+.-+. -|-. .....+..+..++.-.|+++.|.+.++...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 00113566677777778889988877654322 2211 123456677778888899999988887643
Q ss_pred H----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 006981 332 N----QG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-----KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (623)
Q Consensus 332 ~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (623)
. .| -.....+..+|.+.|.-..++++|+..+.+-... ...-...++-+|..+|...|..++|+.+.+.-+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 22 2334567778888888888888888887653320 011245567788888988999999888776654
Q ss_pred H
Q 006981 402 S 402 (623)
Q Consensus 402 ~ 402 (623)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 4
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.079 Score=38.89 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=27.4
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
.+.+.++++.|.++++.+.+.+ |.+...+.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555443 334444444555555555555555555555443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.18 Score=41.54 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC
Q 006981 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (623)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (623)
....|+..+..+++.+|+..|++..|+++.+...+. .+++-+..+|..|+.-.....
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhc
Confidence 346788888888888888888888888888888775 567777888888876554433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.095 Score=48.28 Aligned_cols=123 Identities=18% Similarity=0.218 Sum_probs=68.4
Q ss_pred HhhhCC--CCCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006981 83 FFKLVP--NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (623)
Q Consensus 83 ~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (623)
.|..++ ..|-.+|-+.+..+.. .+.++--...++.|.+.|+..|..+|+.|++.+-+-.-
T Consensus 56 ~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf------------- 122 (406)
T KOG3941|consen 56 QFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF------------- 122 (406)
T ss_pred hhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-------------
Confidence 344444 3455556555555443 24455555566666666666666666666665433211
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHh
Q 006981 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEMN 224 (623)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 224 (623)
.|.. .+....--|- .+-+-+++++++|...|+.||..+-..|+.++++.+-. .+..++.-.|.
T Consensus 123 ---iP~n-vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 123 ---IPQN-VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred ---ccHH-HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1111 0111111111 22345788888888888888888888888888877652 34444444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.1 Score=38.28 Aligned_cols=56 Identities=7% Similarity=0.033 Sum_probs=30.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
..|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555556666666666655543 234445555555555566666666666555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.37 E-value=4.7 Score=42.94 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
.+--+.-+...|+..+|.++-.+.+ -||...|--=+.+++..+++++-+++-+..+ .+.-|.-.+..|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 3333444445566666655544332 3455555555666666666665554443332 13345555566666
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (623)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (623)
.|+.++|.+++.+... .. -...+|.+.|++.+|.+.-
T Consensus 757 ~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 6666666666654321 11 2344555556665555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.3 Score=36.18 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=6.1
Q ss_pred HHHHcCCChhhHHHHHHH
Q 006981 382 TALCDGDQLPKTMEVLSD 399 (623)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~ 399 (623)
.+|.+.|...++-+++++
T Consensus 128 ~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 128 NAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhcchhhHHHHHHH
Confidence 333333333333333333
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.04 E-value=4 Score=40.30 Aligned_cols=258 Identities=12% Similarity=0.029 Sum_probs=129.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChH
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (623)
+...+..++.+|+..+...++.. |.+..++..-+..+...+++++|.--.++-. +.......-.-+.+...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 45567888999999998888876 4555544443444444455555544332211 111111111122222222222
Q ss_pred HHHHHHH------------HH---HHcC-CCCCHHHHHHHH-HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 006981 110 GAFQVLR------------LV---QEAG-LKADCKLYTTLI-TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG- 171 (623)
Q Consensus 110 ~A~~~~~------------~m---~~~g-~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~- 171 (623)
+|.+.++ .. .... -+|...++..|- .++.-.|+.++|.+.--...+.. ....+...+++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 2222221 11 1111 123334444332 34455677777777766666542 12223333333
Q ss_pred -HHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------------HHHHHHHccCCHHHHHHHHHHHhhCC-CCCCCCHHH
Q 006981 172 -CAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-------------ALITACGQSGAVDRAFDVLAEMNAEV-HPVDPDHIT 236 (623)
Q Consensus 172 -~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------------~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~ 236 (623)
+--.++.+.|..-|++.+..+ |+-..-- .=..-..+.|.+..|.+.+.+.+... ....++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 234567777887777776553 3322211 11122446677778887777766431 112334444
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
|.....+..+.|+..+|+.--+...+.+- .-+..+..-..++.-.+.|++|.+-|++..+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555666777777777777777766541 11112222233444456677777777666554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.4 Score=37.90 Aligned_cols=122 Identities=11% Similarity=0.142 Sum_probs=77.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC----CCHHHHHHHH---HHHHcCC
Q 006981 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM---SVCASSK 106 (623)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li---~~~~~~~ 106 (623)
.|.+.+..++|+.-|..+.+.|.-............+..+.|+...|...|+++.. |-+.-=.+-+ -.+..+|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 45589999999999999999987666665555566666777888888888887641 2111001111 1245566
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (623)
.++......+-+-..+-+.-...-..|.-+..+.|++..|.+.|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666666665555444333334444555556667777777777776654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.00 E-value=3.3 Score=39.12 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=24.1
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 138 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
...|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555544432 1223334444555555555555555555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.98 E-value=3.5 Score=44.38 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=72.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC-CCHHHHHHHHHHHHcCCChHHH
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSVCASSKDSEGA 111 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A 111 (623)
+.|++...+.-|+.+-+.-.... .....++.-.+..+...|++++|...|-+... -++ ..+|.-+....+..+-
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknL 416 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNL 416 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHH
Confidence 34556666666666554432211 22345566666677778999999988865431 111 1245556666666777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006981 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (623)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 153 (623)
-..++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+..
T Consensus 417 t~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 417 TSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 7778888888854 4444567889999998887766655443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.95 Score=46.48 Aligned_cols=131 Identities=12% Similarity=0.132 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (623)
-.+.++..+-+.|-.+.|+++-..-. .-.....+.|+++.|.++-++. .+...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35556666666666666665532211 1223344566666665543322 24556666666666
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (623)
+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++-+.....| -+|....++...|+.++.
T Consensus 359 ~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 359 RQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 6666666666665532 24445555666666666666665555554 244444555555666666
Q ss_pred HHHHHH
Q 006981 289 CSVYDD 294 (623)
Q Consensus 289 ~~l~~~ 294 (623)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=2.3 Score=37.02 Aligned_cols=128 Identities=11% Similarity=0.033 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 006981 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTM 377 (623)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~ 377 (623)
.|++..-..+..+..+.|+..+|...|++...--+.-|....-.+.++....++...|...++.+-+.. -.|| +-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 345555555666666666666666666666554444556666666666666666666666666655432 1222 23
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (623)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (623)
-.+...|...|++.+|..-|+..... .|+...-...-..+.++|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 34455666667777777777666653 444443333333345556555544333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.2 Score=36.03 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=38.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 006981 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (623)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (623)
++..+...+.......+++.+...+ ..+...++.++..|++.+. .+.++.+.. ..+......+++.|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 4444444555555555555555544 2344455555555554422 223333321 1122333345555555555
Q ss_pred HHHHHHHHHHH
Q 006981 213 VDRAFDVLAEM 223 (623)
Q Consensus 213 ~~~A~~~~~~m 223 (623)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.29 Score=45.20 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (623)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (623)
-+-+++++++|...|+.||..+-..|+.++.+.+-.
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 345788888898889999988888888888877653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.69 E-value=5.3 Score=40.03 Aligned_cols=420 Identities=13% Similarity=0.137 Sum_probs=210.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC----chHHHHHHHHHHhhhHHHHHHHH---HhhhCCCCCHHHHHHHHHH--HHcCCC
Q 006981 37 RQGRISECIDLLEDMERKGLLDM----DKVYHARFFNVCKSQKAIKEAFR---FFKLVPNPTLSTFNMLMSV--CASSKD 107 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~---~~~~~~~~~~~~~~~li~~--~~~~~~ 107 (623)
+++++.+|..+|.++.+.-..++ ...+.+.++.++-. ++++.-.. .+++-.+. ..|-.+..+ +-+.++
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~--s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGK--SAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhhh
Confidence 88999999999999876542111 12333444444432 22332222 23332222 234444443 456788
Q ss_pred hHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 006981 108 SEGAFQVLRLVQEA--GLKA------------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGALI 169 (623)
Q Consensus 108 ~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~li 169 (623)
+++|++.+..-..+ +-.| |-+.-+..++.+...|++.+++.+++++... ....+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 99999988776654 2222 2233456778888999999999998888754 3347889999877
Q ss_pred HHHHhcC--------C-------HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHhhC
Q 006981 170 DGCAKAG--------Q-------VAKAFGAYGIMRSK------NVKPDRVVFNALITACGQS--GAVDRAFDVLAEMNAE 226 (623)
Q Consensus 170 ~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~ 226 (623)
-++++.= . ++.+.-...+|... .+.|.......++....-. ....--++++..-..
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~- 253 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN- 253 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh-
Confidence 7666531 1 22233333333321 2334333333343332221 122223333333222
Q ss_pred CCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006981 227 VHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIK----GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (623)
Q Consensus 227 ~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 301 (623)
.-+.|+. .+...|..-+.+ +.+++..+-+.+....+. .-..++..+++...+.++...|.+.+.-+.-....
T Consensus 254 -~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 254 -FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred -hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 2344542 233334443333 445555444443322111 11356778888888888888877777655443211
Q ss_pred --------CCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCC-HHHHHHHHHHHHhC
Q 006981 302 --------PDEVFLSALIDF-AGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---GACSNAKN-WQKALELYEHMKSI 368 (623)
Q Consensus 302 --------p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~m~~~ 368 (623)
....++..++.. =...-+...=+.+|.......+.- ......|+ .-+.+.|. -++|.++++.+.+.
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 111222222210 001112223334444443332211 11112222 22344554 77788888877764
Q ss_pred CCCCCHHHHHHHH----HHHHc---CCChhhHHHHHHHHHHCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 006981 369 KLKPTVSTMNALI----TALCD---GDQLPKTMEVLSDMKSLGLCPN----TITYSILLVA--CERKDDVEVGLMLLSQA 435 (623)
Q Consensus 369 ~~~~~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a--~~~~g~~~~a~~~~~~~ 435 (623)
. .-|..+-|.+. ..|.+ ...+.+-+.+-+-..+.|+.|- ...-+.|.+| +...|++.++.-.-.-+
T Consensus 410 t-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 410 T-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2 22443333222 23332 2334445555555566777763 3333444433 45678888876555555
Q ss_pred HHCCCCCCHHHHHHHHHHHH---hcHHHHHHhhHhh
Q 006981 436 KEDGVIPNLVMFKCIIGMCS---RRYEKARTLNEHV 468 (623)
Q Consensus 436 ~~~g~~p~~~~~~~li~~~~---~~~~~a~~~~~~~ 468 (623)
.+ +.|++.+|.-+ ++|. ++|.+|.......
T Consensus 489 ~~--iaPS~~~~RLl-Gl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 489 TK--IAPSPQAYRLL-GLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HH--hCCcHHHHHHH-HHHHHHHhhHHHHHHHHHhC
Confidence 55 67877777644 3332 3677777766554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.8 Score=40.78 Aligned_cols=143 Identities=10% Similarity=0.083 Sum_probs=85.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC-HHHHH---HHHHHHHcCCCh
Q 006981 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFN---MLMSVCASSKDS 108 (623)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~---~li~~~~~~~~~ 108 (623)
..++..|++.+|..+|+...... +.+......+...+...|+.+.|..++..+|... ...|. .-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34567888888888888888766 4555566667777777888888888888877321 11121 223334444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVA 179 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~ 179 (623)
.+...+-++.-.. +-|...-..+...+...|+.++|.+.+-.+.++. -..|...-..|+..+.-.|.-+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 4444444443331 3356666667777777777777776665555431 1234455566666666555433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.26 Score=42.11 Aligned_cols=80 Identities=16% Similarity=0.056 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006981 75 KAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (623)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 151 (623)
|++++|..+|.... +-|..-|..|...+-..+++++|+..|......+ .-|+..+-....++...|+.+.|+..|.
T Consensus 51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHHHH
Confidence 45555555554321 2333334444444444555555555555444333 2233333334555555556666665555
Q ss_pred HHHH
Q 006981 152 EMVN 155 (623)
Q Consensus 152 ~m~~ 155 (623)
....
T Consensus 130 ~a~~ 133 (165)
T PRK15331 130 LVNE 133 (165)
T ss_pred HHHh
Confidence 5554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.64 E-value=5.2 Score=39.74 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
+.+++.+..-.|+.++|.+..++|.+.
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 345555555555666665555555544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.12 Score=38.51 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 375 STMNALITALCDGDQLPKTMEVLSDMKSL--GLC---PN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
.+|+.+...|...|++++|++.|++..+. ... |+ ..++..+...+...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555556666666666666666655421 011 11 3345555566666666666666666554
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.3 Score=45.45 Aligned_cols=165 Identities=12% Similarity=0.153 Sum_probs=62.7
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 006981 25 VSEQLHSYNRLIRQGRISECIDLLE-DMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (623)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~l~~-~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 103 (623)
+++...-|...+-+|+++++.++.+ .-.-.. +| ......+++...+.|..+.|+.+-. |. ..-.....
T Consensus 261 ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~-i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl 329 (443)
T PF04053_consen 261 LDLSELEFKTAVLRGDFEEVLRMIAASNLLPN-IP--KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELAL 329 (443)
T ss_dssp --HHHHHHHHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHH
T ss_pred ECHHHHHHHHHHHcCChhhhhhhhhhhhhccc-CC--hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHH
Confidence 4445555666666666666555543 110001 01 2223333444444444444444321 11 11122333
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (623)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (623)
+.|+++.|.++.+. ..+...|..|.+...+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 44444444444321 12344455555555555555555554444331 3344444444455444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006981 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (623)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (623)
+-+.....| -++....++.-.|+.++..+++.
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444332 13333333444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.76 Score=46.19 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=27.5
Q ss_pred CCCccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006981 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (623)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~ 55 (623)
....|++.......-..|.+.|++++|+..|++.++.+
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN 105 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34556666666666667778888888888888877766
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.9 Score=35.94 Aligned_cols=89 Identities=9% Similarity=-0.054 Sum_probs=61.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (623)
Q Consensus 277 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (623)
--+.+.|++++|..+|.-+...+.. |..-|..|..++-..+++++|...|......+. -|+..+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3345678888888888877765543 455566666666677888888888877655442 34444555667777888888
Q ss_pred HHHHHHHHHHh
Q 006981 357 KALELYEHMKS 367 (623)
Q Consensus 357 ~A~~~~~~m~~ 367 (623)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888877775
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.12 Score=38.49 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 006981 340 ISYSSLMGACSNAKNWQKALELYEHMKSI----KL-KPT-VSTMNALITALCDGDQLPKTMEVLSDMK 401 (623)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (623)
.+++.+...|...|++++|+..|++..+. |. .|+ ..+++.+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555666666666666666554421 10 111 3455666666677777777777766654
|
... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.44 E-value=2.5 Score=35.65 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=62.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (623)
.++..+...+.......+++.+...+ ..+....+.++..|++.+. .+..+.+.. . ++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 45555555666666666666666655 3555666666666665432 233333331 1 12233444566666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (623)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (623)
.++++..++..+.. +...+..+... ++.+.|.+.+.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 66666666654421 11122222222 5566666655541 24455655555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.5 Score=44.25 Aligned_cols=65 Identities=11% Similarity=-0.030 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
.+...|+.+..+|.+.|++++|+..|++..+.. |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455667777777777777777777777766653 332 34666777777777777777777776653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.97 E-value=2.9 Score=34.18 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=82.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (623)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (623)
-.|..++..++..+..... +..-++.+|--....-+-+-..++++.+-+ -.|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 3566777777777766542 445555555444444444444444443322 2222 24555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (623)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (623)
.+-.+- .+....+..+..+...|+-+.-.++..++.+. -.|++.....+..||.+.|+..++.+++.++-+.|+
T Consensus 78 C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 544432 45566777788899999999999999998754 378888999999999999999999999999998885
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.94 E-value=6.9 Score=38.41 Aligned_cols=286 Identities=15% Similarity=0.105 Sum_probs=178.2
Q ss_pred hHHHHHHHHHhhhC---CCCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHH
Q 006981 74 QKAIKEAFRFFKLV---PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAM 146 (623)
Q Consensus 74 ~~~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A 146 (623)
.|+-..|.+.-.+. ...|..-.-.++.+ -.-.|+++.|.+-|+.|... |... -...|.-..-+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 35566666665443 23444444445433 34469999999999999752 2222 233444444577888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHHc---cCCHHHHHHHH
Q 006981 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRV--VFNALITACGQ---SGAVDRAFDVL 220 (623)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~li~~~~~---~g~~~~A~~~~ 220 (623)
.+.-+..-..- +.-...+.+.+...|..|+|+.|+++.+.-+... +.++.. .-..|+.+-.. ..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877776542 2235678889999999999999999998776542 344432 22334433222 23455666655
Q ss_pred HHHhhCCCCCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-C
Q 006981 221 AEMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-K 298 (623)
Q Consensus 221 ~~m~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~ 298 (623)
.+..+ +.||.+.- ..-..++.+.|+..++-.+++.+-+....|+ ++.. -.+.+.|+ .+..-++...+ .
T Consensus 253 ~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 253 LEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCC--cHHHHHHHHHHHH
Confidence 55443 35554332 2344778999999999999999988754443 3322 22344444 33333333222 1
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 299 GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELYEHMKSIKLKPTVST 376 (623)
Q Consensus 299 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (623)
..+| +..+...+..+....|++..|..--+...+. .|....|..|.+.-. ..|+-.++...+.+..+. |....
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A---PrdPa 397 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA---PRDPA 397 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC---CCCCc
Confidence 1233 4566677778888889998888776666554 577778877777654 459999999999888874 33334
Q ss_pred HH
Q 006981 377 MN 378 (623)
Q Consensus 377 ~~ 378 (623)
|+
T Consensus 398 W~ 399 (531)
T COG3898 398 WT 399 (531)
T ss_pred cc
Confidence 54
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.89 E-value=7 Score=38.35 Aligned_cols=222 Identities=16% Similarity=0.081 Sum_probs=123.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCCHH--HHHHHHHHHH---hc
Q 006981 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPE--VYTIAINCCS---QT 282 (623)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~--~~~~li~~~~---~~ 282 (623)
+.|+.+.|.+.-++.-... +.-...+.+++...+..|+++.|+++.+.-....+ .++.. .-..|+.+-. -.
T Consensus 166 r~GareaAr~yAe~Aa~~A---p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 166 RLGAREAARHYAERAAEKA---PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred hcccHHHHHHHHHHHHhhc---cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 4455555555555443321 11123445555555666666666665554433221 11111 1111111111 11
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 283 GDWEFACSVYDDMTKKGVIPDEVF-LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (623)
Q Consensus 283 g~~~~A~~l~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (623)
.+...|...-.+..+. .||.+- -.....++.+.|+..++-.+++.+-+....|+. + ++..+.+.|+.- ..-
T Consensus 243 adp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta--~dR 314 (531)
T COG3898 243 ADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTA--LDR 314 (531)
T ss_pred CChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcH--HHH
Confidence 2344455444443332 334322 223345678889999999999998887655543 2 222345666532 222
Q ss_pred HHH---HHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 006981 362 YEH---MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKE 437 (623)
Q Consensus 362 ~~~---m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~ 437 (623)
+++ +.+.. +-+..+-..+..+-...|++..|..--+.... ..|....|..|.+.-.- .|+-.++.+.+.+.++
T Consensus 315 lkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 315 LKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 222 22211 23566777778888888999888877776665 47888888888776544 4999999999999988
Q ss_pred CCCCCCH
Q 006981 438 DGVIPNL 444 (623)
Q Consensus 438 ~g~~p~~ 444 (623)
..-+|+-
T Consensus 392 APrdPaW 398 (531)
T COG3898 392 APRDPAW 398 (531)
T ss_pred CCCCCcc
Confidence 7656654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.85 E-value=7.6 Score=38.61 Aligned_cols=175 Identities=15% Similarity=0.097 Sum_probs=89.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006981 132 TLITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (623)
Q Consensus 132 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (623)
.++-.|....+++..+++.+.+.... +..+...-....-++-+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777777788888887777531 11122222233344555 6778888888877555545667777766665
Q ss_pred HHHcc---------CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006981 206 ACGQS---------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276 (623)
Q Consensus 206 ~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 276 (623)
.|-.. ...++|...|.+.-. +.||..+--.++..+...|.......-.+++. ..++.+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe----~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~--------~~l~~l- 292 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE----IEPDYYSGINAATLLMLAGHDFETSEELRKIG--------VKLSSL- 292 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc----CCccccchHHHHHHHHHcCCcccchHHHHHHH--------HHHHHH-
Confidence 54321 123444444443322 23332222222222222222111110000000 011111
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 277 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
..+.|. .+-..|-..+.+++.++.-.|+.++|.+..++|.+..
T Consensus 293 --lg~kg~-------------~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 293 --LGRKGS-------------LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred --HHhhcc-------------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 111110 1123466778899999999999999999999998774
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.59 E-value=6.6 Score=41.00 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVV 199 (623)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 199 (623)
...+++..+-.|+-+.+++.+.+..+.+--... ..|...+..++- ....+.|.++++.+.+. .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 445666677778888888888776553211111 123333333332 34456666677666655 455555
Q ss_pred HHHHH-HHHHccCCHHHHHHHHHHHh
Q 006981 200 FNALI-TACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 200 ~~~li-~~~~~~g~~~~A~~~~~~m~ 224 (623)
|...- +.+...|++++|.+.|++..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 54332 44455566777777766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.45 E-value=4.5 Score=42.24 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPE------VYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVF 306 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~ 306 (623)
+..+++...-.|+-+.+++.+....+.+-.-.+. .|..++..++. ....+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4445556666677777777666654432111111 23333333322 23445555555555544 234333
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHH
Q 006981 307 LSALI-DFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 307 ~~~li-~~~~~~g~~~~a~~~~~~~ 330 (623)
|...- ..+...|++++|.+.|+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a 293 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERA 293 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 32222 2233345555555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.7 Score=42.82 Aligned_cols=78 Identities=9% Similarity=-0.053 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (623)
.+++.+..+|.+.+.+.+|++.-++.++.+ ++|....-.=-.+|...|+++.|+..|+++++ +.|+...-+.=|..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456777888999999999999999988764 56777777778899999999999999999998 677766555544444
Q ss_pred H
Q 006981 455 S 455 (623)
Q Consensus 455 ~ 455 (623)
.
T Consensus 335 ~ 335 (397)
T KOG0543|consen 335 K 335 (397)
T ss_pred H
Confidence 3
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.91 E-value=2.9 Score=35.04 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=47.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006981 99 MSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (623)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (623)
.....+.|++++|.+.|+.+..+-. +-.......|+.+|.+.+++++|...+++.++.....-..-|-..+.+++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3444567788888888887776521 1234456667778888888888888888877753221223455555554443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.89 E-value=2 Score=42.22 Aligned_cols=61 Identities=13% Similarity=0.019 Sum_probs=26.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006981 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (623)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (623)
++.+.-++.+.+++.+|++.-+..+... ++|....---..+|...|+++.|+..|+++.+.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELD---PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3334444444444444444444444321 233333333334444444444444444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.66 E-value=2 Score=40.04 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=25.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
|..++...|++++|..+|..+.+.-. +--+..+-.|.....+.|+.++|...|+++.+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44444445555555554444443211 111234444444444444555555554444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.65 E-value=10 Score=36.54 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=31.1
Q ss_pred HHHHHHHHHHccCCH---HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006981 199 VFNALITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (623)
Q Consensus 199 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (623)
++..++.+|...+.. ++|..+++.+..+ .+-+ ..++..-+..+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 445555666655543 3444555555432 1222 223333444555566666666666666554
|
It is also involved in sporulation []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.61 E-value=3.1 Score=34.85 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 316 HAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
+.|++++|.+.|+.+...- -+-.....-.|+.+|.+.+++++|...+++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444444444444331 011223334444445555555555555554444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.56 E-value=13 Score=37.48 Aligned_cols=400 Identities=11% Similarity=0.096 Sum_probs=223.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhh----CC---C-----------CCHHHHHHHHH
Q 006981 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL----VP---N-----------PTLSTFNMLMS 100 (623)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~---~-----------~~~~~~~~li~ 100 (623)
.+++.-...+....+.. +....+....+-.+-+.+.+++|...+.. .. + +|...=+..+.
T Consensus 59 ~nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQF--GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hhHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 34444444445555443 33333333333345556778888777642 11 1 22333355667
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcC--------ChhHHHHHH-------HHHHHC-----
Q 006981 101 VCASSKDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSG--------KVDAMFEVF-------HEMVNA----- 156 (623)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g--------~~~~A~~~~-------~~m~~~----- 156 (623)
.+...|++.++..+++++...=++ -+..+|+.++-++++.= ..+-....| ++|...
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y 216 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPY 216 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchH
Confidence 788899999999999988765444 68889998777666541 112122222 222211
Q ss_pred -CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhCC-CCC-
Q 006981 157 -GIEPNVHTYGALIDGCAKA--GQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNAEV-HPV- 230 (623)
Q Consensus 157 -g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~- 230 (623)
.+.|-......++....-. .+..--.++++.....-+.|+-. ....|+..+.. +.+++..+-+.+.... ..+
T Consensus 217 ~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lk 294 (549)
T PF07079_consen 217 EKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLK 294 (549)
T ss_pred HhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHH
Confidence 2234444444444333221 22233344444444444556543 23344444444 4444444443332210 000
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCC
Q 006981 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-----EVYTIAINCCS----QTGDWEFACSVYDDMTKKGVI 301 (623)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~ 301 (623)
+.=..++..++....+.++...|.+.+..+.-.+...+. .+-..+-+..+ ...+...-+.++......++.
T Consensus 295 e~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 295 EELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 112457888899999999999998888877654321110 11123333333 222344556666666666542
Q ss_pred CCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCC
Q 006981 302 PDEVFLSALID---FAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLM----GACSN---AKNWQKALELYEHMKSIKL 370 (623)
Q Consensus 302 p~~~~~~~li~---~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~~~ 370 (623)
.......++. -+-+.|. -++|+.+++.+.+.. +-|..+-|.+. ..|.+ ...+..-..+-+-+.+.|+
T Consensus 375 -rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 375 -RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred -HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 1122222332 2333444 788999998887753 33444433332 33432 3445666666666777887
Q ss_pred CCCHH----HHHHHHHH--HHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006981 371 KPTVS----TMNALITA--LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (623)
Q Consensus 371 ~~~~~----~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (623)
.|-.+ .-|.|.++ +..+|++.++.-.-.-+.+ +.|+..+|..+.-+.....++++|..++.. +.|+.
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~ 525 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNE 525 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCch
Confidence 66433 34444443 5578999998877666665 789999999988888899999999999965 56787
Q ss_pred HHHHHHH
Q 006981 445 VMFKCII 451 (623)
Q Consensus 445 ~~~~~li 451 (623)
.++++=+
T Consensus 526 ~~~dskv 532 (549)
T PF07079_consen 526 RMRDSKV 532 (549)
T ss_pred hhHHHHH
Confidence 7777754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.56 E-value=4.9 Score=32.82 Aligned_cols=90 Identities=9% Similarity=0.048 Sum_probs=46.8
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 006981 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH---TYGALIDGCAKAGQV 178 (623)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~ 178 (623)
.+..|+.+.|++.|.+....- +.....||.-..++.-.|+.++|++-+++..+..-..+.. +|..-...|-..|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455566666666666555432 3445566666666666666666666555555432111211 122222344555666
Q ss_pred HHHHHHHHHHHhCC
Q 006981 179 AKAFGAYGIMRSKN 192 (623)
Q Consensus 179 ~~A~~~~~~m~~~g 192 (623)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.6 Score=41.33 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNAL 203 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 203 (623)
++..++..+..+|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|++.|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566677777777777777777777664 44667777788888888887777777777654 4677776666555
Q ss_pred HHH
Q 006981 204 ITA 206 (623)
Q Consensus 204 i~~ 206 (623)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.41 E-value=18 Score=38.83 Aligned_cols=301 Identities=13% Similarity=0.092 Sum_probs=169.9
Q ss_pred HcCCCCCHHHHH-----HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCC
Q 006981 120 EAGLKADCKLYT-----TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKN 192 (623)
Q Consensus 120 ~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g 192 (623)
..|++.+..-|. .+|+-+...+.+..|+++-..+...-.. +...|.....-+.+..+ -+++++..++=.+..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 456776665554 4577777888899999887776522111 14566666666666532 233333333322222
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------
Q 006981 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYN------ 264 (623)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------ 264 (623)
. .+..+|..+.+-....|+.+-|..+++.=...+..++ .+..-+...+.-+...|+.+....++-++...-
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 3456788888777888999999988865332211110 112234455666777888887777776654431
Q ss_pred -----CCCCHHHHHHHHH---------HHHhcCCHHHHHHH-HHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHH--
Q 006981 265 -----IKGTPEVYTIAIN---------CCSQTGDWEFACSV-YDDMT----KKGVIPDEVFLSALIDFAGHAGKVEAA-- 323 (623)
Q Consensus 265 -----~~~~~~~~~~li~---------~~~~~g~~~~A~~l-~~~m~----~~~~~p~~~~~~~li~~~~~~g~~~~a-- 323 (623)
.+.....|.-++. .|.+..+...+-.+ ++... ..+..|+ ......++.+.....-.
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHH
Confidence 1111222222222 12222222221111 11100 0122233 23333444444331111
Q ss_pred --------HHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHH
Q 006981 324 --------FEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (623)
Q Consensus 324 --------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (623)
..+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.+ -||-..|---+.+++..+++++-+
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 122222222 1323334455556666778899999999888776 588888888899999999998877
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (623)
Q Consensus 395 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (623)
++-+.+. .+.-|.-...+|.+.|+.++|.+++.+.
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 7655543 2456778888999999999999988654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.64 Score=29.99 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHH
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 273 (623)
+..+...|.+.|++++|+++|+++.+.. +.+...|.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~ 39 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHH
Confidence 3344444555555555555555554443 33333333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.04 E-value=4.7 Score=39.01 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhC
Q 006981 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAK--A----GQVAKAFGAYGIMRSK 191 (623)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~ 191 (623)
+...+++.|.+.|+..+..+|-+....... . ....+|..+|+.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 344566666666666555555443222222 1 1234556666666554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.01 E-value=4.1 Score=38.98 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=69.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH----HHHHHHHHcCC
Q 006981 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG----ALMKACANAGQ 249 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~----~ll~~~~~~g~ 249 (623)
-.|...+|-..++++.+. .+.|...+...=++|...|+.+.-...++++... ..+|...|. .+.-++..+|-
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 356666666667777654 4556667776667777777777777777666532 234432222 22334455677
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (623)
+++|++.-++..+.+ +.|.-+-.+....+-..|++.++.+...+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 777777766666655 44445555566666666666666665443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=9.2 Score=38.82 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhhCC---CCC---HHHHHHHHHHHH---------cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006981 75 KAIKEAFRFFKLVP---NPT---LSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (623)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~---~~~~~~li~~~~---------~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 139 (623)
...+.|+.+|.+.. +-| ...|..+.-.+. ......+|.++.++..+.+ +-|......+..+..-
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 45678888888765 333 333333322211 1234567778888888877 6788888888888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHH
Q 006981 140 SGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNALITACGQSGAVDR 215 (623)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~ 215 (623)
.++++.|..+|++....+ || ..+|........-+|+.++|.+.+++..+. .|.. ......+..|+..+ ++.
T Consensus 351 ~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~ 425 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKN 425 (458)
T ss_pred hcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhh
Confidence 888999999999988763 44 445555555566789999999999986654 3332 22333344565554 677
Q ss_pred HHHHHHH
Q 006981 216 AFDVLAE 222 (623)
Q Consensus 216 A~~~~~~ 222 (623)
|.+++-+
T Consensus 426 ~~~~~~~ 432 (458)
T PRK11906 426 NIKLYYK 432 (458)
T ss_pred hHHHHhh
Confidence 7777654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.90 E-value=2.7 Score=39.21 Aligned_cols=99 Identities=18% Similarity=0.115 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll 241 (623)
.|+.-+..| +.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.+.....+.-...+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444432 445566666666555544210 01122333555566666666666666555543211111123444455
Q ss_pred HHHHHcCChHHHHHHHHHHHhc
Q 006981 242 KACANAGQVDRAREVYKMIHKY 263 (623)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~ 263 (623)
.+..+.|+.++|..+|+.+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555666666666666665554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.83 E-value=10 Score=34.79 Aligned_cols=206 Identities=16% Similarity=0.167 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (623)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (623)
.|.....+|....++++|...+.+..+. ...+...|. . ...++.|..+.+++.+. +--+..|+--..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455566667777777766655431 111211111 1 12235555555555543 122344566667777
Q ss_pred hcCCHHHHHHHHHHHHh--CCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 006981 174 KAGQVAKAFGAYGIMRS--KNVKPDRV--VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~--~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (623)
.+|.++.|-..+++.-+ .++.|+.. .|..-+...-..++...|.++ +..+-..+.+...
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-----------------~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-----------------YGKCSRVLVRLEK 165 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH-----------------HHHhhhHhhhhHH
Confidence 78877777666665432 12333321 122222222222222222222 2333344555556
Q ss_pred hHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHH
Q 006981 250 VDRAREVYKMIHKY----NIKGT-PEVYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVE 321 (623)
Q Consensus 250 ~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~ 321 (623)
+++|-..|.+-... .--++ -..|-+.|-.|....++..|.+.+++--+.+ -.-+..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 65555444332111 00111 1234455555566667777777776643321 1224556666666653 45666
Q ss_pred HHHHHH
Q 006981 322 AAFEIL 327 (623)
Q Consensus 322 ~a~~~~ 327 (623)
++..++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 555544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.78 E-value=5.6 Score=38.13 Aligned_cols=118 Identities=12% Similarity=0.018 Sum_probs=80.9
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHccCCHH
Q 006981 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN----ALITACGQSGAVD 214 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~ 214 (623)
-.|+..+|-..++++.+. .+.|..+++--=++|.-.|+.+.-...+++.... ..||...|. ...-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457777777777777764 3567777777778888888888888888887654 133432222 2334455678888
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006981 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (623)
Q Consensus 215 ~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (623)
+|.+.-++..+.+ +.|...-.++...+...|+..++.++..+-.
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 8888888776532 4456666677777788888888887766543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.69 E-value=3.7 Score=33.48 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=68.6
Q ss_pred HhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChh
Q 006981 71 CKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVD 144 (623)
Q Consensus 71 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~ 144 (623)
....|+++.|++.|.+. .+.+...||.-..++.-.|+.++|+.=+++..+..-..+ ...|..-...|...|+.+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 45678899999999875 367889999999999999999999999998887532222 223444455677889999
Q ss_pred HHHHHHHHHHHCC
Q 006981 145 AMFEVFHEMVNAG 157 (623)
Q Consensus 145 ~A~~~~~~m~~~g 157 (623)
.|..-|+..-+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 9999999888776
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.36 E-value=9 Score=33.25 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=65.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 006981 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (623)
+.++.+.+.+++|+...+..+++.+.+.|++....+++.- ++-+|.......+-.+. +....+.++=-.|.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY------HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 3344455566677777777777777777766555444432 23334333332221111 122222222222222
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 263 Y-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (623)
Q Consensus 263 ~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (623)
+ + ..+..+++.+...|++-+|++..+..... +......++++..+.++...-..+++...+
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1 24556666777777777777776654322 112234455555555655555555554444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.34 E-value=12 Score=34.71 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=11.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 006981 346 MGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~ 367 (623)
.+-|.+.|.+..|..-++.|.+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHh
Confidence 3445555555555555555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.14 E-value=2.7 Score=39.77 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLSAL 310 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~~~l 310 (623)
++..++..+...|+.+.+...++.+.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566666777777777777777777665 56667777777777777777777777776654 4666665555444
Q ss_pred HHH
Q 006981 311 IDF 313 (623)
Q Consensus 311 i~~ 313 (623)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.90 E-value=9.1 Score=32.80 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=25.3
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 103 ASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
.+.++.+++..++..+.-. .|... .-..-...+.+.|++.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445566666666555543 22211 1111223344566666666666665544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.85 E-value=16 Score=35.33 Aligned_cols=131 Identities=14% Similarity=0.260 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHhhCCCCC-CCCHHHHHHHHHHHHHcCC-
Q 006981 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ--SG----AVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQ- 249 (623)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~~~-~~~~~~~~~ll~~~~~~g~- 249 (623)
+++.+.+++.|.+.|+..+..+|-+....... .. ....|..+|+.|++..+-+ .++..++..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667888999999998888776653333322 22 2567889999998863222 2445566666543 3333
Q ss_pred ---hHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 250 ---VDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSAL 310 (623)
Q Consensus 250 ---~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~l~~~m~~~~~~p~~~~~~~l 310 (623)
.+.++.+|+.+.+.|+..+.. ....++........ ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 345666777777766554322 22222222211111 33566666666666666555554433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.77 E-value=6.8 Score=33.56 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=29.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (623)
+.++.+++..+++.+.-.. |........-...+...|++.+|.++|+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 5667777777777776554 4444444444444555566666666666654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.53 E-value=13 Score=33.71 Aligned_cols=200 Identities=17% Similarity=0.075 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~- 312 (623)
.........+...+.+..+...+...... ........+......+...+.+..+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 44455555566666666666666555442 2233344555555666666666666666666665433321 11222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 006981 313 FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (623)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (623)
.+...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56667777777777777644221 1223334444444666777777877777776543111355666777777777778
Q ss_pred hhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 391 PKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
++|...+...... .|+ ...+..+...+...+..+++...+.+..+
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888777763 343 33444444444466667777777777665
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.35 E-value=23 Score=36.26 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 309 ALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
.+...+-+.|+.++|.+.+++|.+.... .+..+...|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444455667777777777777654311 2334556667777777777777777766544
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.31 E-value=26 Score=39.79 Aligned_cols=137 Identities=13% Similarity=0.101 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 006981 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI----TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (623)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l 240 (623)
|.-.++.--+.|.+.+|+.++ .|+...+..+. .-+...+.+++|.-.|+..-+ ..-.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----------lekA 971 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----------LEKA 971 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----------HHHH
Confidence 333344444556666666554 23333333333 333344555565555544321 1223
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (623)
+.+|-.+|++.+|..+..++....- .-..+-..|+.-+...+++-+|-++..+-... |. -.+..+++...+
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~d-e~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKD-ELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHH-HHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHH
Confidence 4555666666666666655432110 00111245555566666666666665554432 11 122234444555
Q ss_pred HHHHHHHHH
Q 006981 321 EAAFEILQE 329 (623)
Q Consensus 321 ~~a~~~~~~ 329 (623)
++|..+-..
T Consensus 1043 ~eAlrva~~ 1051 (1265)
T KOG1920|consen 1043 EEALRVASK 1051 (1265)
T ss_pred HHHHHHHHh
Confidence 555555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.28 E-value=22 Score=35.81 Aligned_cols=145 Identities=10% Similarity=0.131 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 006981 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-NALI 381 (623)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li 381 (623)
...|...+..-.+..-++.|..+|.+..+.+ ..+++.++++++..++ .|+..-|..+|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777777778888899999999998887 5678888888888765 56777888888754332 3454443 4556
Q ss_pred HHHHcCCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 382 TALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (623)
.-+..-++-+.|..+|+..... +..+ ...|..+|+--+.-|++..+..+-++|.+ .-|...+-....+.|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 6677788888899999865543 2333 56788888888888999888888888876 344443333333333
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=18 Score=34.80 Aligned_cols=236 Identities=14% Similarity=0.055 Sum_probs=120.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHCCCCCCH
Q 006981 87 VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEPNV 162 (623)
Q Consensus 87 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~ 162 (623)
+.++|.......+.++...|. +.+...+..+.. .+|...-...+.++++.|+. +++...+..+... .++.
T Consensus 32 L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 345666666666666666664 333333433433 34556666667777777763 3566666665333 4566
Q ss_pred HHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 006981 163 HTYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (623)
.+-...+.++...+.. ..+...+..... .++..+-...+.++++.++ +++...+-.+.. .+|..+-
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-----d~~~~VR 176 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK-----DPNGDVR 176 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----CCCHHHH
Confidence 6666666666554321 223333333322 2244444556666666665 345555555543 2344444
Q ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006981 238 GALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (623)
Q Consensus 238 ~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 316 (623)
...+.++.+.+ +-..+...+..+.. .++..+....+.++.+.+.. .|...+-+..+.+ + .....+.++..
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ 247 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGE 247 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHh
Confidence 44444555442 12344444444443 33456666666677776663 4555555544442 2 12345556666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (623)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (623)
.|.. +|...+..+.+.. +|..+-...+.++
T Consensus 248 ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 248 LGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred cCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 6663 4666665555432 3444444444433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.19 E-value=23 Score=36.04 Aligned_cols=78 Identities=13% Similarity=0.070 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
+|.++-+...+.+.. |......+..+....++++.|...|++....+ +....+|......+.-+|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444444444444332 44444444444444455555555555554443 1122233333333344555555555555533
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.09 E-value=1.1 Score=28.89 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=7.9
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 006981 134 ITTCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~ 154 (623)
...|...|++++|.++|++..
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333333333333333333333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.00 E-value=25 Score=36.07 Aligned_cols=81 Identities=15% Similarity=0.241 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCH--HHHH
Q 006981 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYS 413 (623)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ 413 (623)
+-..+-..|..++-+.|+.++|.+.|++|.+.... -+......|+.++...+.+.++..++.+-.+.. -|.. ..|+
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YT 335 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYT 335 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHH
Confidence 33444456777778899999999999999754322 234466679999999999999999999875432 2443 3466
Q ss_pred HHHHH
Q 006981 414 ILLVA 418 (623)
Q Consensus 414 ~ll~a 418 (623)
..+-.
T Consensus 336 aALLk 340 (539)
T PF04184_consen 336 AALLK 340 (539)
T ss_pred HHHHH
Confidence 65533
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.90 E-value=20 Score=34.92 Aligned_cols=126 Identities=15% Similarity=0.094 Sum_probs=58.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH--
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYN-----IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFLS-- 308 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p~~~~~~-- 308 (623)
+..++...+.++++++.|+...+.- ......++..|-+.|.+..++++|.-...+..+ .++.--..-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444444555555655555543321 011223556666666666666665544433322 12211111121
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 309 ---ALIDFAGHAGKVEAAFEILQEAKN----QGISV-GIISYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 309 ---~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
.+.-++...|.+..|.+.-++..+ .|-.+ -......+.+.|...|+.+.|+.-|++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 222244455655555555554432 23111 1233445566667777777766666543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.40 E-value=8.8 Score=33.96 Aligned_cols=96 Identities=13% Similarity=0.044 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH--HH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP-DRVVFN--AL 203 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~--~l 203 (623)
.+..+.+.|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+....--.+ |...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666666666666666666655432222 2344555566666666666665555543321111 111111 11
Q ss_pred HH--HHHccCCHHHHHHHHHHHh
Q 006981 204 IT--ACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 204 i~--~~~~~g~~~~A~~~~~~m~ 224 (623)
.. .+...+++.+|-+.|-+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 1233567777777776554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.15 E-value=13 Score=36.15 Aligned_cols=165 Identities=15% Similarity=0.046 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHH
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTK-KGVIPD---EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIIS 341 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~ 341 (623)
.|..+..++-+..++.+++.+-..-.. .|..|. -....++-.+....+.++++++.|+...+.- .-....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444555454455555554443322 122221 1122334445555666777777777665431 1123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHHH-----HHHHHHHcCCChhhHHHHHHHHHH----CCCCC
Q 006981 342 YSSLMGACSNAKNWQKALELYEHMKS----IKLKPTV-STMN-----ALITALCDGDQLPKTMEVLSDMKS----LGLCP 407 (623)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~l~~~m~~----~g~~p 407 (623)
+..|-..|.+..++++|.-+.....+ .++. |. .-|. .|.-++...|...+|.+.-++..+ .|-+|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 77788888888888887766554432 2221 21 1222 234467777888888777776533 34332
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 408 N-TITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 408 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
. ......+.+.|...|+.+.|+.-+++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2234456677888888888887777654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.58 E-value=4.6 Score=41.87 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=75.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChH
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 109 (623)
.-|..++-.|+++.|-.++..+.+. .+..+.+...++|-.++|+.+- ++||. -.....+.|+++
T Consensus 591 leyqt~vmrrd~~~a~~vLp~I~k~--------~rt~va~Fle~~g~~e~AL~~s---~D~d~-----rFelal~lgrl~ 654 (794)
T KOG0276|consen 591 LEYQTLVLRRDLEVADGVLPTIPKE--------IRTKVAHFLESQGMKEQALELS---TDPDQ-----RFELALKLGRLD 654 (794)
T ss_pred HHHHHHhhhccccccccccccCchh--------hhhhHHhHhhhccchHhhhhcC---CChhh-----hhhhhhhcCcHH
Confidence 3455556666666666555444321 1223333344455555554431 11111 112233455666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+=....
T Consensus 655 iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 655 IAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 6655554332 344566666666666666666666555432 4455555555565554444444444
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006981 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (623)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (623)
+.|. .|.-.-+|...|+++++.+++..
T Consensus 720 ~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 720 KQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 4431 12222344555666666665544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.36 E-value=6.2 Score=37.48 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=26.2
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
++++++.++..=+..|+.||..|++.+++.+.+.+++.+|.++.-.|+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555554444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.15 E-value=14 Score=40.21 Aligned_cols=175 Identities=11% Similarity=0.051 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG----CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 131 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
..-++.+.+...++.|+.+-+.- + .+..+...+... +-+.|++++|...|-+-+.. +.| ..+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 34455555666666665554332 1 233333333332 33456666666666555432 122 123444
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (623)
|.....+..-..+++.+.+.+ + .+...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.+
T Consensus 407 fLdaq~IknLt~YLe~L~~~g--l-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKG--L-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcc--c-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 555555555555555555532 2 222333456666666666666555555443 2210 001233444555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
+|..+-..... +......+ +-..+++++|++.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 55544433222 12222222 23346666666666543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.83 E-value=18 Score=31.51 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCChhhHHHHHHH
Q 006981 378 NALITALCDGDQLPKTMEVLSD 399 (623)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~ 399 (623)
..++..+...|++-+|+++.+.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3444455555555555555544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.53 E-value=28 Score=33.50 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=89.6
Q ss_pred HcCCChHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHC--------CCCCCH----
Q 006981 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSGKVDAMFEVFHEMVNA--------GIEPNV---- 162 (623)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~---- 162 (623)
.+.|+.+.|..++.+....- ..|+. ..|+.-.+.+.+..+++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677777777776665432 12321 23443344443333777777666654332 122332
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 006981 163 -HTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (623)
Q Consensus 163 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 238 (623)
.+...++.+|...+..+ +|.++++.+.... +-....+..-+..+.+.++.+.+.+.+.+|.... .-....+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~---~~~e~~~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV---DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc---ccccchHH
Confidence 45677788888777654 5666666665442 2224555556777777899999999999998752 21223444
Q ss_pred HHHHHH---HHcCChHHHHHHHHHHHhcCCCCC
Q 006981 239 ALMKAC---ANAGQVDRAREVYKMIHKYNIKGT 268 (623)
Q Consensus 239 ~ll~~~---~~~g~~~~A~~~~~~~~~~~~~~~ 268 (623)
..+..+ .... ...|...++.+....+.|.
T Consensus 160 ~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 160 SILHHIKQLAEKS-PELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence 444444 3322 3445555555544434443
|
It is also involved in sporulation []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.94 E-value=7.1 Score=34.52 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=8.5
Q ss_pred cCCHHHHHHHHHHHH
Q 006981 282 TGDWEFACSVYDDMT 296 (623)
Q Consensus 282 ~g~~~~A~~l~~~m~ 296 (623)
.+++.+|-+.|-+..
T Consensus 126 ~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 126 QRDFKEAAELFLDSL 140 (177)
T ss_pred hchHHHHHHHHHccC
Confidence 456666666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.86 E-value=20 Score=31.12 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=10.0
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 006981 173 AKAGQVAKAFGAYGIMRSKN 192 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g 192 (623)
++.+..++|+..|..+.+.|
T Consensus 69 A~~~k~d~Alaaf~~lektg 88 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTG 88 (221)
T ss_pred HHcCCchHHHHHHHHHHhcC
Confidence 34444555555555555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.56 E-value=1.7 Score=26.53 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 006981 165 YGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
|+.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555556666666666666655
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.23 E-value=8.4 Score=29.61 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHH
Q 006981 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGM 453 (623)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~~g~~p~~~~~~~li~~ 453 (623)
.-++.+-++.+....+.|+.....+.+.||.+..++..|.++|+-++ +.|. +...|..+++-
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 34566777777777889999999999999999999999999999877 4343 55578877754
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.16 E-value=55 Score=35.55 Aligned_cols=151 Identities=10% Similarity=0.086 Sum_probs=86.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--chHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCh
Q 006981 31 SYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 108 (623)
..+-|++.+.+++|+++-+.-...- +. ..-....++..+...|++++|-+..-.|...+..-|.--+..++..++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~--~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNE--ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCc--cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 3556899999999998877654332 21 2223333344445568888888888888877888888877777777665
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH------------------HHCCCCCCHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM------------------VNAGIEPNVHTYGALID 170 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------------~~~g~~~~~~~~~~li~ 170 (623)
..... .+.......+...|..++..+.. .+...-.++..+. .+. .-+...-..|+.
T Consensus 440 ~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~ 513 (846)
T KOG2066|consen 440 TDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAH 513 (846)
T ss_pred chhhc---cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHH
Confidence 43322 22222212345567777766665 2222211111111 000 112223334777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 006981 171 GCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~ 189 (623)
.|...+++..|+.++-..+
T Consensus 514 LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHccChHHHHHHHHhcc
Confidence 7777788888877776665
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.69 E-value=1.4 Score=26.50 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=17.0
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
+..+.+ |.+..+|+.+...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 333433 445566666666666666666654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.57 E-value=1.9 Score=26.30 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=11.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHH
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRL 117 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~ 117 (623)
|+.|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555555555555555554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.55 E-value=27 Score=31.50 Aligned_cols=202 Identities=17% Similarity=0.134 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006981 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (623)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 277 (623)
..+......+...+....+...+...... .........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 33344444444444444444444443320 0012223333334444444444555555555544432211 111112222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 278 -CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (623)
Q Consensus 278 -~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (623)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....+.........+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45566666666666666543211 012223333333355566677777777666655321135566666677777777
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 355 WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
++.|...+....... |+ ...+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777776542 32 334444444444666677787777777663
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.97 E-value=46 Score=33.62 Aligned_cols=131 Identities=13% Similarity=0.149 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHH
Q 006981 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGA 239 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~~ 239 (623)
..+|..+++.-.+..-.+.|..+|-+..+.| +.+++..++++|.-++ .|+...|..+|+--... -||... -+-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~----f~d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK----FPDSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh----CCCchHHHHH
Confidence 4456666666666666677777777776666 5566666666666544 35566666666654332 233322 234
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.+..+.+.++-+.|..+|+....+- ..+ ...|..+|+.-.+-|+...+..+=+.|...
T Consensus 472 yl~fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 4555566667777777776433221 111 245666666666666666666555555543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.66 E-value=17 Score=28.34 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 006981 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~ 454 (623)
+..+-++.+....+.|+.....+.|.||.+..++..|.++|+-++. .|-. ...|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHH
Confidence 5566677777778899999999999999999999999999998874 4533 33788887653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=84.10 E-value=66 Score=34.70 Aligned_cols=146 Identities=9% Similarity=0.050 Sum_probs=33.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (623)
Q Consensus 290 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (623)
...+.+...-...+......++..|.+.|-.+.|.++.+.+-..-. ...-|..-+.-+.++|+......+-+.+.+..
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~ 468 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEY 468 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3334444332334566677888888888888888888876654421 12345555556666666655555544444322
Q ss_pred CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006981 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA---CERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (623)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a---~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 446 (623)
+..+......++....... +..+.-++-..+.- ..+.|+..+|.+.+-.+.+.++.|...-
T Consensus 469 ~~~~~~~~~~ll~~i~~~~----------------~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~ 532 (566)
T PF07575_consen 469 CNNGEPLDDDLLDNIGSPM----------------LLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFW 532 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCcccHHHHHHhcchh----------------hhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHH
Confidence 2222222222222211111 01111111111111 1334777777777767777777777666
Q ss_pred HHHHHHH
Q 006981 447 FKCIIGM 453 (623)
Q Consensus 447 ~~~li~~ 453 (623)
..-|.++
T Consensus 533 ~~LL~d~ 539 (566)
T PF07575_consen 533 PLLLCDA 539 (566)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 5555554
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.88 E-value=37 Score=31.67 Aligned_cols=209 Identities=14% Similarity=0.156 Sum_probs=115.7
Q ss_pred CCCCCCCCCCCCCCccCChhhhHHHHHHHH-hcCCHHHHHHHHHHHHHcCC--CCCchHHHHHHHHHHhhhHHHHHHHHH
Q 006981 7 NMLQFPYPNGKHANYAHDVSEQLHSYNRLI-RQGRISECIDLLEDMERKGL--LDMDKVYHARFFNVCKSQKAIKEAFRF 83 (623)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 83 (623)
-..+|.|.... +-..+++-...-||.=. +...+++|+.-|++..+... -.|+.-..-.++...-+.+.+++....
T Consensus 10 EDYg~EYsdds--~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~ 87 (440)
T KOG1464|consen 10 EDYGFEYSDDS--NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMER 87 (440)
T ss_pred hhcCceecccc--CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHH
Confidence 34555565432 22223333333444332 66799999999999876431 135544444555666667778888877
Q ss_pred hhhCC---------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 006981 84 FKLVP---------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-----GLKADCKLYTTLITTCAKSGKVDAMFEV 149 (623)
Q Consensus 84 ~~~~~---------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~ 149 (623)
|.++. .-+..+.|+++...+.+.+.+.-...++.-.+. +-..--.|-+.|...|...+.+..-.++
T Consensus 88 Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KI 167 (440)
T KOG1464|consen 88 YKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKI 167 (440)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHH
Confidence 77653 234557788887777666655554444332211 0011112334566667777777777777
Q ss_pred HHHHHHC-----CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HccCC
Q 006981 150 FHEMVNA-----GI------EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITAC-----GQSGA 212 (623)
Q Consensus 150 ~~~m~~~-----g~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~-----~~~g~ 212 (623)
+.++... |- ..=...|..=|.+|....+-.+-..+|++.... .--|.+... .+|+-| .+.|+
T Consensus 168 lkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~ 246 (440)
T KOG1464|consen 168 LKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGE 246 (440)
T ss_pred HHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccch
Confidence 7766532 10 111345666777777777777777777766532 112333332 234433 34566
Q ss_pred HHHHHH
Q 006981 213 VDRAFD 218 (623)
Q Consensus 213 ~~~A~~ 218 (623)
+++|-.
T Consensus 247 fe~AhT 252 (440)
T KOG1464|consen 247 FEKAHT 252 (440)
T ss_pred HHHHHh
Confidence 766653
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.66 E-value=2.5 Score=25.15 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHH
Q 006981 377 MNALITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
|..+...|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.40 E-value=39 Score=31.50 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=29.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 006981 173 AKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (623)
.+.|++++|.+.|+.+...-. +-...+--.++-++-+.+++++|...+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 345666666666666654410 112233444555556666666666666666554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.18 E-value=13 Score=38.81 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 162 VHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
..-|..|.++..+.+++..|.+.|.+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 33444444444444444444444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.97 E-value=28 Score=29.47 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=35.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (623)
..++++++..+++.|.--. |........-...+...|++++|.++|+.+..
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 5788888888888887654 44444444445556667788888888887764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.83 E-value=47 Score=31.98 Aligned_cols=137 Identities=11% Similarity=-0.044 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLM 346 (623)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (623)
+..+-...+.++.+.++ .++...+..+... +|...-...+.++.+.+ ..+.+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44555555666655554 3455555555542 23334444444444432 13344444444442 23555556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (623)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 420 (623)
.++.+.|+. .|...+-...+. ++ .....+.++...|.. +|+..+..+.+. .||..+-...+.+|.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666663 344444333332 22 123455666666664 566666666543 345555555555543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.71 E-value=74 Score=34.20 Aligned_cols=183 Identities=15% Similarity=0.095 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHH--H-HHHcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-
Q 006981 108 SEGAFQVLRLVQEAGLKADCKLYTTLIT--T-CAKSGKVDAMFEVFHEMVN-------AGIEPNVHTYGALIDGCAKAG- 176 (623)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~--~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 176 (623)
...|.+.++...+.|. ........++. + +....+.+.|+..|....+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567888887777662 11222222222 2 3355678888888888766 44 2334555666666532
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH--HcCC
Q 006981 177 ----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA--NAGQ 249 (623)
Q Consensus 177 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~--~~g~ 249 (623)
+.+.|+.+|.+.-..| .|+....-..+..... ..+...|.++|......+ .++..-+.+++.... ...+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcCCC
Confidence 5566888887777776 3444443333332222 245677888877776542 122222211111111 2235
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006981 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 300 (623)
...|..++++..+.| .|....-...+..+.. +.++.+.-.+..+...|.
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 677777777777777 3322222223333333 666666666666655543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.04 E-value=3.7 Score=24.32 Aligned_cols=32 Identities=28% Similarity=0.180 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006981 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (623)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (623)
.+|..+..++...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4678888999999999999999999987 4454
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.51 E-value=2.2 Score=25.66 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 006981 162 VHTYGALIDGCAKAGQVAKA 181 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A 181 (623)
..+|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33333333333333333333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.23 E-value=32 Score=29.08 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=30.4
Q ss_pred cCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 104 SSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
..++.+++..++..|.-. .|+ ..++- .-.+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 366777777777777653 332 22333 33355777788888888777765
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.20 E-value=22 Score=34.03 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHH
Q 006981 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (623)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (623)
|.+....+...++..-....+++.+...+-.++..... ..|+ .+-.+.++.+. .-++++++.++..=.+.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 33444444444554444455666666666665542100 0111 11112222222 235556666666666677777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777776666655543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.74 E-value=44 Score=30.29 Aligned_cols=180 Identities=16% Similarity=0.084 Sum_probs=98.0
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (623)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (623)
|-+..|+-=|....... +.-+.+||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-|.. .-.|++..|.+-+
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHH
Confidence 33344444444444432 334678888888888888888888888888877554333333333322 2357888887776
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCC
Q 006981 328 QEAKNQGIS-VGIISYSSLMGACSNAKNWQKALEL-YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (623)
Q Consensus 328 ~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 405 (623)
...-+.... |-...|--++ .+.-+..+|..- .++.. ..|..-|...|-.|.-..-.+ ..+++++... -
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~-a 226 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISE--ETLMERLKAD-A 226 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccH--HHHHHHHHhh-c
Confidence 666555321 2112222221 223345555543 33433 245555555444443222222 2233333331 1
Q ss_pred CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 406 CPN-------TITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (623)
Q Consensus 406 ~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (623)
.-+ ..||--+..-+...|+.++|..+|+-.+...
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 111 2356667777888999999999998887643
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.74 E-value=46 Score=30.55 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=15.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006981 350 SNAKNWQKALELYEHMKSIKLKPTVSTM 377 (623)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (623)
+..+++.+|.++|+++....+..+..-|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 3455566666666666554444343333
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.63 E-value=18 Score=32.29 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 006981 268 TPEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A 288 (623)
|+..+.+|++.|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 444444444444444444443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=80.05 E-value=56 Score=31.13 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 284 DWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGH-AG-KVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKAL 359 (623)
Q Consensus 284 ~~~~A~~l~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (623)
...+|+++|+.... ..+.-|......++..... .+ ....-.++.+.+... +-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34466666663222 2233466666666665544 11 222233333333332 34566777777888888888888888
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhhHHHHHHH-----HHHCCCCCCHHHHHHH
Q 006981 360 ELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSD-----MKSLGLCPNTITYSIL 415 (623)
Q Consensus 360 ~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-----m~~~g~~p~~~t~~~l 415 (623)
+++...... +...|...|..+|....+.|+..-..++.++ +.+.|+..+...-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 887766543 4556777788888888888887665555544 2334444444443333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.6 bits (202), Expect = 2e-16
Identities = 26/209 (12%), Positives = 56/209 (26%), Gaps = 2/209 (0%)
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
P L+ + G + + A C + + A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 220 LAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
L A+M A G V M+ + Y A+ C
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 279 CSQTGDWEFACSVY-DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
+ + M+++G+ +F + L+ A ++A ++
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMK 366
++ S L+ +L+ +K
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.0 bits (198), Expect = 5e-16
Identities = 33/240 (13%), Positives = 78/240 (32%), Gaps = 4/240 (1%)
Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
E + + + ++ + + L A ++ A +L
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 329 EAKNQ---GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
Q + + Y+++M + +++ + + +K L P + + A + +
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 386 DGDQLPKTME-VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
DQ T+E L M GL + ++LL +R ++ + +P
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 445 VMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEV 504
V ++ + + H+ + LA V ++ T+P+ EV
Sbjct: 272 VNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEV 331
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 78.3 bits (191), Expect = 4e-15
Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 6/189 (3%)
Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA---FGA 184
+ L+ +D + A + A C Q+ A
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
+ R K ++NA++ + GA VL + + PD ++ A ++
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG--LTPDLLSYAAALQCM 210
Query: 245 ANAGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
Q + + + +K + ++ + + V + +P
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP 270
Query: 304 EVFLSALID 312
V S L+
Sbjct: 271 PVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 78.3 bits (191), Expect = 4e-15
Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 6/169 (3%)
Query: 72 KSQKAIKEAFRFFKLV--PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKAD 126
K +++A + C + A +L +
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY- 185
+Y ++ A+ G + V + +AG+ P++ +Y A + + Q A
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
M + +K + L++ ++ + V + P +
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.4 bits (186), Expect = 2e-14
Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 4/184 (2%)
Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWE 286
+ + A K C Q+ A + + H K T ++Y + ++ G ++
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSL 345
V + G+ PD + +A + G + L++ +G+ + + + L
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242
Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
+ A + ++ P + L+ + D ++ +K+L
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
Query: 406 CPNT 409
Sbjct: 303 LFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.2 bits (144), Expect = 2e-09
Identities = 28/201 (13%), Positives = 65/201 (32%), Gaps = 3/201 (1%)
Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
A + + S + L+ + +L + A
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 382 TALCDGDQLPKTMEVL---SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
DQLP +L + Y+ +++ R+ + + +L K+
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 439 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 498
G+ P+L+ + + R+ + A T+ + + +++ +T++ L A V
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 499 IPTVEVVSKVLGCLQLPYNAD 519
+ V+ + L P N
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTS 275
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 2e-12
Identities = 90/662 (13%), Positives = 179/662 (27%), Gaps = 193/662 (29%)
Query: 18 HANYAH---DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
H ++ H + E + Y D+L E + + D +V
Sbjct: 1 HHHHHHMDFETGEHQYQYK------------DILSVFEDAFVDNFD------CKDVQDMP 42
Query: 75 KAI--KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK-LYT 131
K+I KE + + T + ++ + ++ V + V+E L+ + K L +
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE-----MVQKFVEEV-LRINYKFLMS 96
Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGI--------------------------EPNVHTY 165
+ T + + M+ + + NV
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 166 GALIDGCAK---AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
G L G K A V ++ + + ++ + + + VL
Sbjct: 157 GVL--GSGKTWVALDVCLSY------KVQCKMDFKIFW---LNL----KNCNSPETVLEM 201
Query: 223 MNAEVHPVDPDHITIGALMKAC-ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
+ ++ +DP+ + + Y + +N +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-----ENCLLVLLNVQNA 256
Query: 282 TGDWE---FAC---------SVYD------------DMTKKGVIPDEVFLSALIDFAGHA 317
W +C V D D + PDEV S L+ +
Sbjct: 257 K-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLDC- 313
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKN-WQKALELYEHMKSIKLKPTV- 374
++ +E + + S++ + W ++H+ KL +
Sbjct: 314 ----RPQDLPREVL--TTNPRRL---SIIAESIRDGLATWDN----WKHVNCDKLTTIIE 360
Query: 375 STMNAL--------------------ITA--LC---DGDQLPKTMEVLSDMKSLGLC--- 406
S++N L I L M V++ + L
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 407 PNTITYSI----LLVACERKDDVEVGLMLLSQ-------AKEDGVIPNLVM-FKCIIG-- 452
P T SI L + + +++ + ++ +D + P L F IG
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 453 -MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC 511
E+ L F +E K + + T++ +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRF----LEQK---IRHDSTAWNASGSILNTLQQLKF---- 529
Query: 512 LQLPY------NADIRERLVENLG----VSADALKRSNLCSLIDGFGEYDPRAFSLLEEA 561
Y N ERLV + + L S L+ + EEA
Sbjct: 530 ----YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEA-IFEEA 583
Query: 562 AS 563
Sbjct: 584 HK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 4e-10
Identities = 82/541 (15%), Positives = 149/541 (27%), Gaps = 182/541 (33%)
Query: 16 GKH---ANYAHDVSEQLHSYNRL--IRQGRISECIDLLEDMERKGLLDMDKVYHAR---F 67
GK + Q ++ + + +LE +++ L +D + +R
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHS 220
Query: 68 FNVCKSQKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKA 125
N+ +I+ R K P N L+ VL VQ A A
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYE-----NCLL--------------VLLNVQNAKAWNA 261
Query: 126 ---DCKLYTTLITTCAKS----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
CK L+TT K + + + + P+ +
Sbjct: 262 FNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-----------EVKSLL 307
Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-I 237
K + +P L EV +P ++ I
Sbjct: 308 LKYL---------DCRPQD----------------------LPR---EVLTTNPRRLSII 333
Query: 238 GALMKACANAGQVDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-----ACSV 291
++ A + +K N + ++N E+ SV
Sbjct: 334 AESIR-------DGLATWDNWK---HVNCDKLTTIIESSLNVLEPA---EYRKMFDRLSV 380
Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
+ IP + LS + ++ + SL
Sbjct: 381 FPPSAH---IPTIL-LSLIWF----DVIKSDVMVVVNKLHK----------YSL------ 416
Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
+ K + ++LK + AL ++ D +PK + +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-----------TFDSDDLI 465
Query: 412 --------YSIL---LVACERKDDVEVGLMLLS-----QAK---------EDGVIPNLVM 446
YS + L E + + + M+ + K G I N +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 447 ----FKCIIGMCSRRYEKARTLNEHVLSF--NSGRPQIENKWTSL---ALM-----VYRE 492
+K I +YE R +N +L F I +K+T L ALM ++ E
Sbjct: 526 QLKFYKPYICDNDPKYE--RLVNA-ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 493 A 493
A
Sbjct: 583 A 583
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 18/158 (11%), Positives = 51/158 (32%), Gaps = 6/158 (3%)
Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
+ K Y + + +V+ + ++ + + + E
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDARTRHHVY 393
Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
ALM+ + A +++++ K PE I+ S + +++ +
Sbjct: 394 VTAALMEYYCS-KDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERV 451
Query: 296 TKKGVIPDEV---FLSALIDFAGHAGKVEAAFEILQEA 330
G +P E + + F + G + + ++ +
Sbjct: 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 4e-04
Identities = 17/132 (12%), Positives = 46/132 (34%), Gaps = 8/132 (6%)
Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
+ ++ +Y + VY + + + ++ + V++
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394
Query: 308 -SALIDFAGHAGKVEAAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEH 364
+AL+++ + AF+I + + + +++Y + S+ L+E
Sbjct: 395 TAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL---SHLNEDNNTRVLFER 450
Query: 365 -MKSIKLKPTVS 375
+ S L P S
Sbjct: 451 VLTSGSLPPEKS 462
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 623 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.6 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.53 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.51 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.5 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.5 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.49 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.37 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.36 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.33 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.32 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.23 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.21 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.2 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.17 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.11 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.1 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.09 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.0 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.92 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.86 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.86 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.84 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.81 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.81 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.8 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.77 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.77 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.75 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.71 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.71 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.7 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.68 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.66 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.63 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.61 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.56 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.5 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.49 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.49 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.47 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.43 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.42 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.42 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.42 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.4 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.38 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.38 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.36 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.35 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.35 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.34 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.34 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.33 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.33 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.31 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.28 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.28 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.28 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.27 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.27 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.24 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.24 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.24 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.23 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.22 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.19 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.18 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.17 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.17 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.16 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.16 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.1 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.1 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.09 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.08 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.08 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.07 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.07 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.06 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.05 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.05 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.02 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.99 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.99 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.98 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.95 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.94 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.93 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.93 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.93 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.92 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.82 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.79 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.76 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.74 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.73 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.7 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.68 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.67 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.65 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.64 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.61 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.56 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.55 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.55 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.55 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.54 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.5 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.44 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.36 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.36 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.33 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.33 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.31 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.28 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.24 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.11 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.09 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.06 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.04 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.97 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.95 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.88 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.86 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.68 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.64 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.6 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.21 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.93 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.86 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.67 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.6 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.45 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.43 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.4 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.33 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.24 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.2 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.11 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.88 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.32 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.17 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.84 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.79 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.94 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.93 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.7 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.64 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.62 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.51 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.32 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.94 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.27 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.74 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.62 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.5 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.3 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.87 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.79 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.05 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.44 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.16 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.77 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.03 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 80.63 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=320.64 Aligned_cols=416 Identities=8% Similarity=-0.041 Sum_probs=357.5
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC--CCCCHHHHHHHHH
Q 006981 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTLSTFNMLMS 100 (623)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~ 100 (623)
++...|+.++ +.|++++|+.+|++|.+.. | +......++..+...|++++|+.+|+++ .+++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--G-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--C-CchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 4566666665 7899999999999999765 3 3345566888899999999999999998 5789999999999
Q ss_pred HHHcCCChHHHHHHHHHHH-Hc--------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006981 101 VCASSKDSEGAFQVLRLVQ-EA--------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (623)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~-~~--------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 165 (623)
+|.+.|++++|.++|+++. .. +.+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 9999999999999998532 11 223458899999999999999999999999998864 2234443
Q ss_pred HH--------------------------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 166 GA--------------------------------------LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (623)
Q Consensus 166 ~~--------------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (623)
.. ++..|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 33 355667889999999999999865 58999999999999
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (623)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (623)
.+.|++++|.++|+++.... +.+..+++.++.+|.+.|++++|..+|+.+.+.. +.+..+|+.++..|.+.|++++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 99999999999999998642 3466789999999999999999999999998765 6778999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 288 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999876432 68899999999999999999999999998875 45788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006981 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (623)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~ 441 (623)
.. +.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++++++.+.+ .
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 64 357899999999999999999999999999875 66887 7899999999999999999999999998754 3
Q ss_pred CCHHHHHHHHHHHHh
Q 006981 442 PNLVMFKCIIGMCSR 456 (623)
Q Consensus 442 p~~~~~~~li~~~~~ 456 (623)
.+..+|..+..+|.+
T Consensus 548 ~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 548 NDANVHTAIALVYLH 562 (597)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 477888888888654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=303.51 Aligned_cols=403 Identities=10% Similarity=0.014 Sum_probs=350.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCC-------------------CH
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-------------------TL 92 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~ 92 (623)
...+.+.|++++|+.+|+++... +.+......++..+.+.|++++|+++|+++.+. +.
T Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 124 AQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhH
Confidence 34455899999999999988643 455667778888899999999999999965443 48
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHH--------------------------------------H
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL--------------------------------------I 134 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------------------------------i 134 (623)
.+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+ +
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 899999999999999999999999999875 3334443333 5
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 214 (623)
..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+++.++.++.+.|+.+
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHH
Confidence 5666889999999999999865 5899999999999999999999999999999765 447889999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (623)
Q Consensus 215 ~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (623)
+|.++++++... .+.+..+++.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|+++|++
T Consensus 357 ~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 357 KLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999863 25578899999999999999999999999998865 56788999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 006981 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KL 370 (623)
Q Consensus 295 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 370 (623)
+.+.+. .+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +.
T Consensus 433 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 433 AARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 998754 378899999999999999999999999998875 457899999999999999999999999999775 55
Q ss_pred CCC--HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 006981 371 KPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMF 447 (623)
Q Consensus 371 ~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~ 447 (623)
.|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+. .|+. ..+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~ 587 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMAS 587 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHH
Confidence 777 7899999999999999999999999998864 448899999999999999999999999999984 4543 344
Q ss_pred HHH
Q 006981 448 KCI 450 (623)
Q Consensus 448 ~~l 450 (623)
..+
T Consensus 588 ~~l 590 (597)
T 2xpi_A 588 DLL 590 (597)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=270.77 Aligned_cols=202 Identities=16% Similarity=0.247 Sum_probs=115.6
Q ss_pred HHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHHH
Q 006981 254 REVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---------VEAA 323 (623)
Q Consensus 254 ~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~~a 323 (623)
..+.+.+.+.+....+. +++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. +++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 33344444444433332 3555556666666666666666666655666666666666665554433 4556
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (623)
Q Consensus 404 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (623)
|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.+++.+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666665543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=266.17 Aligned_cols=188 Identities=18% Similarity=0.279 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCHH
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD---------WEFACSVYDDMTKKGVIPDEV 305 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~l~~~m~~~~~~p~~~ 305 (623)
..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. .++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34566667777777777777777777777777777777777776665543 678888999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (623)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (623)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006981 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (623)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (623)
+.|+.++|.++|++|.+.|+.|+..||+.++..++..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999988999999999888887653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-26 Score=233.63 Aligned_cols=377 Identities=12% Similarity=0.044 Sum_probs=258.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCCh
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~ 108 (623)
...+.+.|++++|.+.++++.+.. |.+......+...+...|++++|..+++.. .+.+..+|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345668888888888888888776 566666666666777777777777777654 245667777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777653 4445667777777777777777777777777653 224455666777777777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 006981 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (623)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 268 (623)
.+.. +.+..+|..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|...|++..+.. +.+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 6653 3346677777777777777777777777776531 2335566667777777777777777777776654 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (623)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (623)
..++..+...|.+.|++++|.+.|+++.+.+.. +..++..+...+.+.|++++|...++++.+.. +.+..+++.+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 667777777777777777777777777765432 45566777777777777777777777776653 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 006981 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERK 422 (623)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~ 422 (623)
+.+.|++++|...++++.+.. +.+..+|..+...|.+.|++++|++.|+++.+. .| +...|..+...+...
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHc
Confidence 777777777777777776543 234566777777777777777777777777653 44 344455444444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-25 Score=225.80 Aligned_cols=362 Identities=13% Similarity=0.077 Sum_probs=316.7
Q ss_pred HHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 006981 69 NVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (623)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (623)
..+.+.|++++|.+.|+.+. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 34556788999999998753 5567778888889999999999999999998875 6788999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|.++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999998864 4456789999999999999999999999998763 33455677788889999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006981 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (623)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 305 (623)
.. +.+..++..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++....... +..
T Consensus 164 ~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 164 TQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred hC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 42 3457889999999999999999999999999876 667889999999999999999999999999876433 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (623)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (623)
++..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|+.+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 89999999999999999999999999875 4467889999999999999999999999998764 467899999999999
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006981 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (623)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (623)
+.|++++|.+.++++.+. .+.+..++..+..++.+.|++++|...|+++.+ +.|+
T Consensus 317 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 999999999999999875 234678899999999999999999999999987 4554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-21 Score=201.22 Aligned_cols=332 Identities=11% Similarity=0.026 Sum_probs=240.2
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
.++..|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 456677777778888888888888888877654 5567777888888888888888888888877764 34577777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHH------------HHHHccCCHHHHHHHHHHHhhCCCCCCCCH
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNALI------------TACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li------------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (623)
.+|.+.|++++|...|+++.+.. +.+. ..+..+. ..+.+.|++++|...|+++... .+.+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 177 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---CVWDA 177 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCh
Confidence 88888888888888888887653 2223 4444443 3377788888888888887753 23456
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL---- 310 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l---- 310 (623)
.++..+..+|.+.|++++|...|+.+.+.+ +.+..+|..+...|.+.|++++|...|+++...... +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 777788888888888888888888887764 556778888888888888888888888888765322 33444433
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006981 311 --------IDFAGHAGKVEAAFEILQEAKNQGISVG-----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (623)
Q Consensus 311 --------i~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (623)
...+.+.|++++|...++.+.+.. |+ ..++..+..++.+.|++++|...++++.+.. +.+...|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 677888888888888888887753 33 3467778888888888888888888876543 3467788
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHCCCCCC-HHHHHHHH------------HHHHhcC-----CHHHHHHHHHH
Q 006981 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILL------------VACERKD-----DVEVGLMLLSQ 434 (623)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll------------~a~~~~g-----~~~~a~~~~~~ 434 (623)
..+..+|...|++++|...|+++.+ +.|+ ...+..+. ..|...| +.+++.+.+++
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 8888888888888888888888876 3554 44444444 2234444 56677777776
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-21 Score=198.84 Aligned_cols=326 Identities=13% Similarity=0.053 Sum_probs=256.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (623)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (623)
+...+....... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..+|.+.|++++|+..|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444444432 5567788899999999999999999999988764 45788899999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHH------------HHHHHHcCChHHHH
Q 006981 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGAL------------MKACANAGQVDRAR 254 (623)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~~~l------------l~~~~~~g~~~~A~ 254 (623)
.+ +.+..++..+..+|.+.|++++|.+.|+++... .|+. ..+..+ ...+.+.|++++|.
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 64 446788889999999999999999999998864 4443 455544 44488999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
..|+.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+... .+..++..+...|...|++++|...++.+.+..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998875 66788899999999999999999999999887643 367889999999999999999999999988764
Q ss_pred CCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChhhHHHHH
Q 006981 335 ISVGIISYSSL------------MGACSNAKNWQKALELYEHMKSIKLKPT-----VSTMNALITALCDGDQLPKTMEVL 397 (623)
Q Consensus 335 ~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~ 397 (623)
+.+...+..+ ...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|+..+
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344455444 788999999999999999988743 44 457888899999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 006981 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCII 451 (623)
Q Consensus 398 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~li 451 (623)
+++.+.. +.+..+|..+..+|...|++++|...++++.+ +.|+. ..+..+-
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 9988752 33688899999999999999999999999987 45543 3344433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-21 Score=203.28 Aligned_cols=404 Identities=10% Similarity=0.015 Sum_probs=311.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcC
Q 006981 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASS 105 (623)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 105 (623)
....+.+.+.|++++|+..|+++.+.+ | +...+..++..+...|++++|+..|+++. +.+..+|..+..++.+.
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 344566779999999999999999987 4 56677778888888999999999998753 56778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC----------------------------
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG---------------------------- 157 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------- 157 (623)
|++++|...|+.+.+.+ +++......++..+.+......+.+.+..+...+
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 99999999999999876 4454455555554444333333322221111000
Q ss_pred -------C---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHH
Q 006981 158 -------I---------EPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRS-----KNV--------KPDRVVFNALIT 205 (623)
Q Consensus 158 -------~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~~~~~li~ 205 (623)
. +.+...+..+...+.. .|++++|...|+++.+ ..- +.+..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 0 1113444444444444 8999999999999887 311 223557778888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006981 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (623)
.+...|++++|...|+++... .|+..++..+...+...|++++|...++.+.+.. +.+..++..+...|...|++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHCCCHHHHHHHHHHHHhh----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 999999999999999998864 3447788888999999999999999999998876 55678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 286 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
++|...|++..+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887544 56788888889999999999999999988764 345778889999999999999999999988
Q ss_pred HhCCCC-CC----HHHHHHHHHHHHc---CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 366 KSIKLK-PT----VSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 366 ~~~~~~-~~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
.+.... ++ ...|..+...+.. .|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 753211 11 3488889999999 999999999999988753 33677888899999999999999999999987
Q ss_pred CCCCCCHHH
Q 006981 438 DGVIPNLVM 446 (623)
Q Consensus 438 ~g~~p~~~~ 446 (623)
. .|+...
T Consensus 478 ~--~~~~~~ 484 (514)
T 2gw1_A 478 L--ARTMEE 484 (514)
T ss_dssp H--CSSHHH
T ss_pred h--ccccHH
Confidence 4 455433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-20 Score=198.89 Aligned_cols=373 Identities=6% Similarity=-0.036 Sum_probs=289.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHc
Q 006981 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (623)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (623)
.......+.+.|++++|++.|+++.+.+ |.+...+..++..+...|++++|...|+++. +++......++..+..
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 3334455668999999999999999987 6777788888899999999999999998753 3444444444444433
Q ss_pred CCChHHHHHHHHHHHHc-----------------------------------CC---------CCCHHHHHHHHHHHHH-
Q 006981 105 SKDSEGAFQVLRLVQEA-----------------------------------GL---------KADCKLYTTLITTCAK- 139 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~-----------------------------------g~---------~~~~~~~~~li~~~~~- 139 (623)
......+.+.+..+... .. +.+...+......+..
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (514)
T 2gw1_A 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199 (514)
T ss_dssp HHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 22222222222111100 00 1114444444444444
Q ss_pred --cCChhHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006981 140 --SGKVDAMFEVFHEMVN-----AGI--------EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (623)
Q Consensus 140 --~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (623)
.|++++|...|+++.+ ..- +.+..++..+...+...|++++|...|+++.+.. |+..++..+.
T Consensus 200 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~ 277 (514)
T 2gw1_A 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMA 277 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHH
Confidence 8999999999999987 311 2245678889999999999999999999998874 3488888999
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006981 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (623)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (623)
..+...|++++|...++++.... +.+..++..+...+...|++++|...|+.+.+.. +.+..++..+...|.+.|+
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 353 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKLD---SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENK 353 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTC
T ss_pred HHHHHCCCHHHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCC
Confidence 99999999999999999998642 4456788899999999999999999999998876 5567899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHH
Q 006981 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VG----IISYSSLMGACSN---AKNWQ 356 (623)
Q Consensus 285 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~ 356 (623)
+++|...++++.+.... +...+..+...+...|++++|...+..+.+.... ++ ..++..+...|.+ .|+++
T Consensus 354 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 354 FDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred HHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence 99999999999876433 5678888999999999999999999998765311 11 3488999999999 99999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHH
Q 006981 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (623)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (623)
+|...|++..+.. +.+..+|..+...|.+.|++++|.+.|++..+. .|+....
T Consensus 433 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 433 EATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHH
Confidence 9999999988754 346788999999999999999999999999885 5665443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-20 Score=194.88 Aligned_cols=392 Identities=12% Similarity=0.047 Sum_probs=291.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCC
Q 006981 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (623)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~ 107 (623)
..+.+.+.|++++|++.|+++.+.+ |.+...+..++..+...|++++|++.|+++. +.+..+|..+...+...|+
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence 3445569999999999999999987 6778888888888999999999999998764 5678899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCCHH------------------
Q 006981 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GIEPNVH------------------ 163 (623)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~------------------ 163 (623)
+++|+..|+.+ .. .|+. ....+..+...+....|...++.+... ...|+..
T Consensus 109 ~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 109 FTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 99999999633 22 2322 222344555556667788888877542 1112222
Q ss_pred ------------HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHccCCHHHH
Q 006981 164 ------------TYGALIDGCAK--------AGQVAKAFGAYGIMRSKNVKPD-------RVVFNALITACGQSGAVDRA 216 (623)
Q Consensus 164 ------------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~~~~g~~~~A 216 (623)
....+...+.. .|++++|..+|+++.+.. +.+ ..++..+...+...|++++|
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 12222222211 247888999999888763 222 23466666778888999999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
.+.+.+.... .|+..++..+...+...|++++|...|+.+.+.. +.+..+|..+...+...|++++|...|++..
T Consensus 263 ~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 263 QVLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999998764 4667788888888899999999999999988876 5678889999999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CC
Q 006981 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-----LK 371 (623)
Q Consensus 297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~ 371 (623)
+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+.. ..
T Consensus 338 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 76533 45778888889999999999999999988764 4456788888999999999999999998876532 11
Q ss_pred CCHHHHHHHHHHHHcC----------CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 372 PTVSTMNALITALCDG----------DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 372 ~~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
.....+..+...+.+. |++++|...|+++.+.. +.+..++..+...+.+.|++++|.+.|+++.+.
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1223344455667777 99999999999988752 336778888889999999999999999998874
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-17 Score=167.02 Aligned_cols=313 Identities=11% Similarity=0.043 Sum_probs=190.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
|+..+..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567777788888888888888888888765 5567788888888888888888888888887763 336678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHH------------HHHHHccCCHHHHHHHHHHHhhCCCCCCCCH
Q 006981 171 GCAKAGQVAKAFGAYGIMRSKNVKP----DRVVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (623)
.+.+.|++++|...|++..+. .| +...+..+ ...+...|++++|.+.++++.... +.+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~ 154 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWDA 154 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCch
Confidence 888888888888888888765 33 33333333 344555555555555555554421 2234
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 314 (623)
..+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+.... +...+..+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~- 231 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV- 231 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH-
Confidence 445555555555555555555555555443 344455555555555555555555555555443211 11111111000
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCh
Q 006981 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQL 390 (623)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~ 390 (623)
. .......+...+.+.|++++|...+++..+.... +. ..+..+...+.+.|++
T Consensus 232 ----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 232 ----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp ----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCH
T ss_pred ----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCH
Confidence 0 0011112345566777777777777766654311 22 2234456667777777
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
++|++.+++..+.. +.+..++..+...+...|++++|...|+++.+
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777776642 22566677777777777777777777777766
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-17 Score=164.43 Aligned_cols=313 Identities=12% Similarity=0.046 Sum_probs=205.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006981 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (623)
|+..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567777888888888888888888887764 4467788888888888888888888888887653 335677888888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006981 206 ACGQSGAVDRAFDVLAEMNAEVHPVDP----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (623)
.+...|++++|...|.++... .| +...+..+...+. ...+..+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 888888888888888888753 34 2223333311000 0112223445555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (623)
Q Consensus 282 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (623)
.|++++|.+.++++.+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666655554322 44555555555666666666666666655543 33455566666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHH------------HHHHHHHcCCChhhHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCC
Q 006981 362 YEHMKSIKLKPTVSTMN------------ALITALCDGDQLPKTMEVLSDMKSLGLCPN-T----ITYSILLVACERKDD 424 (623)
Q Consensus 362 ~~~m~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~ 424 (623)
|++..+.. +.+...+. .+...+.+.|++++|.+.++++.+. .|+ . ..+..+..++.+.|+
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccC
Confidence 66655432 12222222 3466789999999999999999885 344 3 234557788999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHhhHhhhhccC
Q 006981 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNS 473 (623)
Q Consensus 425 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~ 473 (623)
+++|...++++.+.. ..+...+..+..++.+ ++++|....+.....++
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999998752 2356667777776654 77888777665554433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-17 Score=176.91 Aligned_cols=388 Identities=11% Similarity=0.032 Sum_probs=278.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006981 62 VYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138 (623)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 138 (623)
......+..+...|++++|+..|+++. +.+..+|..+..++.+.|++++|++.++.+.+.+ +.+..++..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 344555666777788888988888753 5678888888888999999999999999888875 556788888888999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHH-------------
Q 006981 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVV------------- 199 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~------------- 199 (623)
..|++++|.+.|+.+ .. .|+ ..+..+..+...+....|...++++... ...|+...
T Consensus 105 ~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 999999999988633 22 222 2233344555666667788888877543 11222221
Q ss_pred -----------------HHHHHHHHHc--------cCCHHHHHHHHHHHhhCCCCCCCC--------HHHHHHHHHHHHH
Q 006981 200 -----------------FNALITACGQ--------SGAVDRAFDVLAEMNAEVHPVDPD--------HITIGALMKACAN 246 (623)
Q Consensus 200 -----------------~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~--------~~~~~~ll~~~~~ 246 (623)
...+...+.. .|++++|..+++++... .|+ ..++..+...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA----NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----CCCcchhhHHHHHHHHHHHHHHHh
Confidence 1222222221 14788999999998864 333 2346667778888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (623)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (623)
.|++++|...|+.+.+.. |+..++..+...|...|++++|...|+++.+.... +..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999998864 44788999999999999999999999999876543 677888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC--
Q 006981 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-- 404 (623)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-- 404 (623)
++.+.+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...|..+...+...|++++|.+.|+++.+..
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99998865 3456788889999999999999999999988764 3456788889999999999999999999987532
Q ss_pred ---CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cHHHHHHhh
Q 006981 405 ---LCPNTITYSILLVACERK----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLN 465 (623)
Q Consensus 405 ---~~p~~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~ 465 (623)
.......+......+... |++++|...++++.+.. ..+...+..+..++.+ ++++|....
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 111222344445667777 99999999999998742 2345556666666543 444444433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-17 Score=161.93 Aligned_cols=280 Identities=12% Similarity=0.019 Sum_probs=122.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (623)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (623)
+..+...+...|++++|.++|+++.+.. +.+...+..++..+.+.|++++|...++++.+.. +.+...|..+...+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 1222333333344444444444444444444331 1223344444444444
Q ss_pred cC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 210 SG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 210 ~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (623)
.| ++++|.+.|++..... +.+...+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|
T Consensus 103 ~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 44 4444444444443321 1123334444444444444444444444444432 22233344444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--------ISVGIISYSSLMGACSNAKNWQKALE 360 (623)
Q Consensus 289 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (623)
...+++..+.... +...+..+...+...|++++|...++++.+.. .+....++..+...|.+.|++++|..
T Consensus 179 ~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4444444443221 33444444444444455555544444443321 02223455555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 006981 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVAC 419 (623)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 419 (623)
.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+. .| +...+..+..++
T Consensus 258 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 258 YHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 555554432 123445555555555555555555555555442 23 334444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-17 Score=159.96 Aligned_cols=293 Identities=14% Similarity=0.070 Sum_probs=242.5
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (623)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (623)
+.+...+..+...+...|++++|+++++.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..+|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3456667788888888999999999999998875 4556677778888899999999999999998864 4467888999
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 006981 169 IDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (623)
Q Consensus 169 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (623)
...+...| ++++|...|++..+.. +.+...|..+...+...|++++|.+.+.++.... +.+...+..+...|...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHH
Confidence 99999999 9999999999998764 4457788899999999999999999999988642 33456777788999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCC
Q 006981 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--------VIPDEVFLSALIDFAGHAGK 319 (623)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--------~~p~~~~~~~li~~~~~~g~ 319 (623)
|++++|...++.+.+.. +.+..++..+...+...|++++|...+++..+.. ...+..++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999998876 6678899999999999999999999999887631 12345788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCCh
Q 006981 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQL 390 (623)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~ 390 (623)
+++|...++...+.. +.+..++..+...|.+.|++++|...|++..+.. +.+...+..+..++ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 999999999998865 4467889999999999999999999999988764 34677888888877 445543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-15 Score=154.26 Aligned_cols=365 Identities=11% Similarity=0.006 Sum_probs=298.0
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhh----hHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHc----CCChHHHHHH
Q 006981 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDSEGAFQV 114 (623)
Q Consensus 44 A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~~~ 114 (623)
++..+....+.| +......++..+.. .++.++|+..|++.. ..+...+..+...|.. .++.++|.+.
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 345555555544 22333344444444 577889999988654 3567788888888888 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 006981 115 LRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFGAYG 186 (623)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 186 (623)
|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|++.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998865 66778888888888 789999999999998875 67788888888887 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 006981 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYK 258 (623)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~ 258 (623)
+..+.| +...+..+...|.. .++.++|.+.|.+.... .+...+..+...|.. .+++++|..+|+
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 998875 67888888888887 89999999999998763 356677888888886 789999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 006981 259 MIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-----GKVEAAFEILQE 329 (623)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~ 329 (623)
+..+.+ +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|... ++.++|...+.+
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998865 45777888888887 899999999999998775 456677777788777 899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHH
Q 006981 330 AKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKS 402 (623)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 402 (623)
..+.+ +...+..+...|.+.| +.++|.+.|++..+. .+...+..+...|.. .+++++|++.|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 99876 4667788888888766 789999999999885 467888889999988 8999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 006981 403 LGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDGVI 441 (623)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~g~~ 441 (623)
.| +...+..+...+.+ .++.++|...|++..+.|..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 56777788888887 89999999999999986643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-15 Score=160.14 Aligned_cols=407 Identities=11% Similarity=0.073 Sum_probs=274.8
Q ss_pred cCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHH
Q 006981 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLM 99 (623)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li 99 (623)
|.++..-..... +.+.|++++|+.+|+++.+.. |.+..+...++....+.|++++|..+|++.. .|++..|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 444444333333 346899999999999999876 6777777777888888889999999999865 46777888777
Q ss_pred HHH-HcCCChHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHCCCCCCHH
Q 006981 100 SVC-ASSKDSEGAFQ----VLRLVQEA-GLKA-DCKLYTTLITTCAK---------SGKVDAMFEVFHEMVNAGIEPNVH 163 (623)
Q Consensus 100 ~~~-~~~~~~~~A~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~ 163 (623)
... ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 543 45677776665 66666543 4433 56777777776655 688999999999988732111123
Q ss_pred HHHHHHHHH-------------HhcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHHHHHHHHcc---
Q 006981 164 TYGALIDGC-------------AKAGQVAKAFGAYGIM------RSKN---VKPD--------RVVFNALITACGQS--- 210 (623)
Q Consensus 164 ~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~li~~~~~~--- 210 (623)
.|....... .+.+++..|..++.++ .+.. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 444332211 1234566777766652 2221 2343 23455444332221
Q ss_pred -CCH----HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHhcCCCCCHHH
Q 006981 211 -GAV----DRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-------AGQVD-------RAREVYKMIHKYNIKGTPEV 271 (623)
Q Consensus 211 -g~~----~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~ 271 (623)
++. +.+..+|++.... .+.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~---~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred CCcchhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 222 3667778877763 23356677777777665 68876 88888888876323556788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-C 349 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 349 (623)
|..++..+.+.|++++|..+|+++.+.... + ...|...+..+.+.|++++|..+|++..+.. +.+...+...... +
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence 888888888889999999999888875322 3 2477878888888888889999888887753 2233333332222 3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHH
Q 006981 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPN--TITYSILLVACERKDDVE 426 (623)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~ 426 (623)
...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+
T Consensus 402 ~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 35888889999888776643 2357888888888888889999999998888753 2332 447777777778888888
Q ss_pred HHHHHHHHHHH
Q 006981 427 VGLMLLSQAKE 437 (623)
Q Consensus 427 ~a~~~~~~~~~ 437 (623)
.+..++.++.+
T Consensus 481 ~~~~~~~r~~~ 491 (530)
T 2ooe_A 481 SILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888775
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-14 Score=152.37 Aligned_cols=338 Identities=13% Similarity=0.039 Sum_probs=287.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhh----hHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHc----CCCh
Q 006981 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDS 108 (623)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~ 108 (623)
.+++++|+..|++..+.| +......++..+.. .++.++|+..|++.. ..+...+..+...+.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 789999999999999876 23445556666666 788999999998765 4577788888888888 8899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAK 180 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 180 (623)
++|+..|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +..++..|...|.. .++.++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 99999999998876 57788888888887 789999999999999864 78889999999988 899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCChHH
Q 006981 181 AFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDR 252 (623)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~ 252 (623)
|...|++..+.| +...+..+...|.. .++.++|.++|++.... .+...+..+...|.. .++.++
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-----GNSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHCCCCCCCCHHH
Confidence 999999998876 56778888888876 78999999999998763 345677778888888 899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 006981 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---KVEAAF 324 (623)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~ 324 (623)
|...|++..+.+ +...+..+...|... +++++|...|++..+.| +...+..+...|...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998765 457888888888887 89999999999999876 4567777777777766 789999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHH
Q 006981 325 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEV 396 (623)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l 396 (623)
+.|++..+.+ +...+..|...|.. .+++++|...|++..+.+ +...+..|...|.+ .++.++|...
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 67888899999998 899999999999998854 67788889889988 8999999999
Q ss_pred HHHHHHCCC
Q 006981 397 LSDMKSLGL 405 (623)
Q Consensus 397 ~~~m~~~g~ 405 (623)
|++..+.+.
T Consensus 426 ~~~A~~~~~ 434 (490)
T 2xm6_A 426 FDTASTNDM 434 (490)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHCCC
Confidence 999998763
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-17 Score=163.72 Aligned_cols=297 Identities=11% Similarity=-0.013 Sum_probs=159.4
Q ss_pred hHHHHHHHH-HhhhCC---C--C--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 006981 74 QKAIKEAFR-FFKLVP---N--P--TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (623)
Q Consensus 74 ~~~~~~A~~-~~~~~~---~--~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (623)
.|++++|+. .|++.. + | +...+..+...+.+.|++++|+..++.+.+.. +.+..++..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 665432 1 1 23456666666777777777777777776654 4456666666677777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.... +.+...+..+... .. .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------~-- 178 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------G-- 178 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------h--
Confidence 777777666553 3356666666666667777777777776666543 1112121111000 00 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (623)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 303 (623)
..+. ..+..+.. +...|++++|...|+++.+.. +. +..++..+...|.+.|++++|...|+++...... +
T Consensus 179 ----~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~ 250 (368)
T 1fch_A 179 ----AGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-D 250 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred ----hccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-C
Confidence 0000 01111222 225666667777666666554 22 4566666666666666666666666666654321 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CC
Q 006981 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK----------PT 373 (623)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------~~ 373 (623)
...+..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...|++..+.... ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 4556666666666666666666666665543 234555666666666666666666666655432110 01
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHH
Q 006981 374 VSTMNALITALCDGDQLPKTMEVLS 398 (623)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~l~~ 398 (623)
..+|..+..+|...|+.++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4556666666666666666655554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-17 Score=163.96 Aligned_cols=302 Identities=12% Similarity=-0.044 Sum_probs=189.5
Q ss_pred hcCCHHHHHH-HHHHHHHcCCCCC--chHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHH
Q 006981 37 RQGRISECID-LLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEG 110 (623)
Q Consensus 37 ~~g~~~~A~~-l~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 110 (623)
..|++++|++ .|++..+.....+ .......++..+...|++++|+..|+++. +.+..+|..+...+...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 4578888888 7776654432111 12334456777788899999999998763 5678899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (623)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (623)
|+..++.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+... .. .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------~-- 178 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------G-- 178 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------h--
Confidence 999999999876 5678899999999999999999999999999874 2222222211000 00 0
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHH
Q 006981 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (623)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (623)
..+ ...+..+.. +...|++++|...|.++.... +-.++..++..+...|.+.|++++|...|+++.+.. +.+..
T Consensus 179 --~~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 179 --AGL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp ----------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred --hcc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 000 011111112 225566666666666665431 111135566666666666666666666666666554 44556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CCCHH
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI----------SVGII 340 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~ 340 (623)
+|..+...+.+.|++++|...|+++.+... .+...+..+...|.+.|++++|...++.+.+... +....
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 666666677777777777777766665432 2456666666677777777777777766654321 11256
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 006981 341 SYSSLMGACSNAKNWQKALELYE 363 (623)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~ 363 (623)
+|..+..+|.+.|+.++|..+++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHhCChHhHHHhHH
Confidence 77788888888888888777665
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-16 Score=158.40 Aligned_cols=266 Identities=11% Similarity=-0.057 Sum_probs=187.0
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
.+...|..+...+.+.|++++|+..|+.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 456678889999999999999999999999875 5678899999999999999999999999998864 44688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPD-----------RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 238 (623)
..|.+.|++++|+..|+++.+.. |+ ...+..+...+...|++++|.+.++++.... +-..+..++.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 217 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQT 217 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHH
Confidence 99999999999999999988652 22 1222334667777778888888887777642 1112566777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (623)
.+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|...|++..+.... +..++..+...|.+.|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 77777777778888887777777664 556677777777777777777777777777665322 4566677777777777
Q ss_pred CHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 319 KVEAAFEILQEAKNQGIS-----------VGIISYSSLMGACSNAKNWQKALELY 362 (623)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (623)
++++|...++++.+.... .+..+|..+..++...|+.+.+..+.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 777777777766543200 02344555555555555555554443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-14 Score=150.00 Aligned_cols=396 Identities=10% Similarity=0.065 Sum_probs=281.4
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 006981 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (623)
Q Consensus 48 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 124 (623)
|++..+.+ |.+......++.. .+.|++++|..+|+++. |.+...|..++..+.+.|++++|..+|+++.+. .
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55666666 5666666556664 55688999999999864 557788999999999999999999999999976 3
Q ss_pred CCHHHHHHHHHHH-HHcCChhHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 006981 125 ADCKLYTTLITTC-AKSGKVDAMFE----VFHEMVN-AGIEP-NVHTYGALIDGCAK---------AGQVAKAFGAYGIM 188 (623)
Q Consensus 125 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 188 (623)
|+...|...+... ...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6877887777533 45677777665 7777654 35443 56788888887655 78999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH-------------HccCCHHHHHHHHHHH------hhCCC-CCCCC--------HHHHHHH
Q 006981 189 RSKNVKPDRVVFNALITAC-------------GQSGAVDRAFDVLAEM------NAEVH-PVDPD--------HITIGAL 240 (623)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~~~-~~~~~--------~~~~~~l 240 (623)
.+....+....|....... .+.+++..|..++... ..... .++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111123443322211 1235567777776652 21100 12443 2355555
Q ss_pred HHHHHHc----CCh----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhC
Q 006981 241 MKACANA----GQV----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-------TGDWE-------FACSVYDDMTKK 298 (623)
Q Consensus 241 l~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~ 298 (623)
+...... ++. +.+..+|++..... +.++..|..++..+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433222 232 37778999988864 6678999999998876 68876 899999998863
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006981 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (623)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (623)
-.+-+...|..++..+.+.|++++|..+|+.+.+.. +.+. ..|..++..+.+.|++++|.++|++..+... .+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHH
Confidence 122367889999999999999999999999999863 2233 5899999999999999999999999987532 233333
Q ss_pred HHHHH-HHHcCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHH
Q 006981 378 NALIT-ALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPN--LVMFKCIIG 452 (623)
Q Consensus 378 ~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g-~~p~--~~~~~~li~ 452 (623)
..... .+...|+.++|..+|++..+. .| +...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+.
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 33222 234689999999999998875 35 67889999999999999999999999999863 3332 335555554
Q ss_pred H
Q 006981 453 M 453 (623)
Q Consensus 453 ~ 453 (623)
.
T Consensus 472 ~ 472 (530)
T 2ooe_A 472 F 472 (530)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-18 Score=182.23 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 304 EVFLSALIDFAGHAGKVEAAFEILQEAKN---QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (623)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (623)
..||+++|++||+.|++++|.++|..|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||++|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46888888888888888888888877653 477888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCCh-hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHH
Q 006981 381 ITALCDGDQL-PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN------LVMFKCIIGM 453 (623)
Q Consensus 381 i~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~------~~~~~~li~~ 453 (623)
|.++++.|+. ++|.++|++|.+.|+.||.+||++++.++.+.+-++.. +++ .-++.|+ ..+..-|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV----HKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH----GGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH----HHh-CcccCCCCCCcccccchHHHHHH
Confidence 8888888874 67888888888888888888888888766554333322 222 2245544 3444455666
Q ss_pred HHh
Q 006981 454 CSR 456 (623)
Q Consensus 454 ~~~ 456 (623)
|++
T Consensus 282 ~s~ 284 (1134)
T 3spa_A 282 YAK 284 (1134)
T ss_dssp HCC
T ss_pred Hcc
Confidence 554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-19 Score=187.04 Aligned_cols=150 Identities=13% Similarity=0.210 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQ---EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (623)
..+||++|++|++.|++++|.++|+.|. ..|+.||++|||+||++|++.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC------HHHHHHHH
Q 006981 169 IDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALM 241 (623)
Q Consensus 169 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~~~ll 241 (623)
|.++++.|+ .++|.++|++|.+.|+.||.++|++++.++.+.+ +++..+++. .++.|+ ..+...|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~---P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVK---PTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGC---CCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhC---cccCCCCCCcccccchHHHH
Confidence 999999998 4789999999999999999999999997766543 333333332 234443 45556677
Q ss_pred HHHHHcC
Q 006981 242 KACANAG 248 (623)
Q Consensus 242 ~~~~~~g 248 (623)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-15 Score=150.47 Aligned_cols=279 Identities=10% Similarity=-0.019 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...|..+...+...|++++|..+++.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44556777788888899999999998888765 5577788888888889999999999998888764 446778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH--HHHHcC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK--ACANAG 248 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~--~~~~~g 248 (623)
.|...|++++|.+.|+++.+.. +.+...+..+... .|+......+.. .+...|
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA------------------------DVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------------CCTTSHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH------------------------HHHHHHHHHHHHhHHHHHcc
Confidence 8888899999998888888763 1222222222000 000000111101 133444
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (623)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (623)
++++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+.... +..++..+...+...|++++|...++
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555544443 334445555555555555555555555555443221 34445555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHcCCChhhHHHHH
Q 006981 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-----------TVSTMNALITALCDGDQLPKTMEVL 397 (623)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~ 397 (623)
++.+.. +.+..++..+...|.+.|++++|.+.|++..+..... +...|..+..++.+.|++++|..++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 554432 2244555555566666666666666665554432110 2455666666666666666666666
Q ss_pred HH
Q 006981 398 SD 399 (623)
Q Consensus 398 ~~ 399 (623)
++
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 54
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-17 Score=160.57 Aligned_cols=290 Identities=15% Similarity=0.143 Sum_probs=128.0
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCC
Q 006981 29 LHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (623)
Q Consensus 29 ~~~~~~l~-~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 107 (623)
+...+.|+ +.|++++|.+.++++.... +...++..+.+.|++++|++.|.+. +|..+|..++..+...|+
T Consensus 6 ~~a~~~ll~~~~~ld~A~~fae~~~~~~-------vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 6 TSAVQVLIEHIGNLDRAYEFAERCNEPA-------VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHhCCChH-------HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCC
Confidence 34455666 7788999999999984432 3346777788889999999999764 566689999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
+++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999977766664 4557788899999999999999888774 36777999999999999999999999997
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006981 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (623)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (623)
+ ..|..+..++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +..
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~ 205 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVV 205 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTT
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHh
Confidence 7 36888999999999999999999876 2567899999999999999999655443 233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CH
Q 006981 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISV------GI 339 (623)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~ 339 (623)
.+.-...++..|.+.|++++|..+++...... .-....|+-+.-.|++- +++.+.++.|.. +-+++| +.
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~ 282 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQA 282 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHH
Confidence 44555678899999999999999999887654 33566677666666654 344444444431 123333 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH
Q 006981 340 ISYSSLMGACSNAKNWQKALEL 361 (623)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~ 361 (623)
..|..++-.|.+.++++.|...
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHH
Confidence 6788888888899999988764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-16 Score=158.17 Aligned_cols=273 Identities=12% Similarity=0.025 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (623)
.+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555555555555555555432 2344455555555555555555555555554432 223444445555555
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 209 QSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (623)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (623)
..|++++|.+.|+++... .|+... +..+ ......+..+...+.+.|++++
T Consensus 145 ~~g~~~~A~~~~~~al~~----~p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ----NPKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH----CHHHHCC--------------------------------------------CCHHHHH
T ss_pred ccccHHHHHHHHHHHHHh----CccchHHHhhh-------------------------ccchHHHHHHHHHHhhhhhHHH
Confidence 555555555555544431 111100 0000 0012334445666777777777
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 288 ACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 288 A~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
|...|+++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...|++..
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777665322 146667777777777777777777777776653 3456677777777777788888877777776
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL---C--------PNTITYSILLVACERKDDVEVGLMLLSQ 434 (623)
Q Consensus 367 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (623)
+.. +.+..+|..+...|.+.|++++|...|+++.+... . .+..+|..+..++...|+.+.+..+.++
T Consensus 275 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 275 EIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 643 23467777777778888888888888877765210 0 0245677777777788887777766543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-15 Score=146.45 Aligned_cols=256 Identities=12% Similarity=0.147 Sum_probs=185.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-hHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCh
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 108 (623)
...+.....|++..|++.++...... |.+ ......+++.+...|++++|+..++...+|+..++..+...+...++.
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcH
Confidence 34556677888888888887664433 333 234456677777788888888888776667777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
++|++.++.+...+..| +...+..+...+...|++++|++.+++ +.+..++..++..|.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888887766434 566666777888888888888888876 45777888888888888888888888888
Q ss_pred HHhCCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 006981 188 MRSKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (623)
Q Consensus 188 m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (623)
+.+.. |+.... ...+..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...|+++.+.+
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 87763 443211 12233344457788888888888764 24566777778888888888888888888877765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 006981 265 IKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKG 299 (623)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~~ 299 (623)
+.++.++..++..+...|+.++ +.++++++.+..
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 5677778888888888887765 567777777653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=150.22 Aligned_cols=277 Identities=12% Similarity=0.042 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (623)
.+..+...+...|++++|..+|+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 44556666777777777777777776653 3356667777777777777777777777776653 335566666677777
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHH-HH-HHHhcCCH
Q 006981 209 QSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA-IN-CCSQTGDW 285 (623)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~ 285 (623)
..|++++|.+.+.++.... |+. ..+..+... .++......+ .. .+...|++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ----PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS----TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC----CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 7777777777777766531 211 111111000 0111111122 22 37788999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 286 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
++|.+.++++.+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++.
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999887543 77889999999999999999999999998875 456888999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-----------NTITYSILLVACERKDDVEVGLMLLSQ 434 (623)
Q Consensus 366 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (623)
.+.. +.+..+|..+...|.+.|++++|.+.|+++.+..... +..++..+..++.+.|+.++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8754 3468899999999999999999999999988742111 367888999999999999999999876
Q ss_pred HH
Q 006981 435 AK 436 (623)
Q Consensus 435 ~~ 436 (623)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 54
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=162.96 Aligned_cols=283 Identities=13% Similarity=0.156 Sum_probs=130.7
Q ss_pred hhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006981 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (623)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 151 (623)
...|++++|.++++++.+|+ +|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|++.++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34577999999999997664 899999999999999999999965 3577799999999999999999999887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 006981 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (623)
Q Consensus 152 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 231 (623)
..++. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+.
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------- 149 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------- 149 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT-------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-------
Confidence 77664 4567889999999999999999888874 3677899999999999999999999998762
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006981 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (623)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 311 (623)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. . +......++
T Consensus 150 ----n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~--~ad~l~~lv 214 (449)
T 1b89_A 150 ----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V--HADELEELI 214 (449)
T ss_dssp ----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T--CHHHHHHHH
T ss_pred ----hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h--CHhhHHHHH
Confidence 5888999999999999999999988 257899999999999999999966554322 2 334455788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 006981 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP------TVSTMNALITA 383 (623)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~ 383 (623)
..|.+.|++++|..+++...... +-....|+-|..+|++- +++.+.++.|..- .+++| +...|..+...
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999887655 55677788777777764 4555666655421 12222 34568888888
Q ss_pred HHcCCChhhHHHH
Q 006981 384 LCDGDQLPKTMEV 396 (623)
Q Consensus 384 ~~~~g~~~~A~~l 396 (623)
|.+.++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 8888888888763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-14 Score=138.74 Aligned_cols=194 Identities=11% Similarity=0.056 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006981 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (623)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 311 (623)
+..++..+...+...++.++|.+.++.+...+. +.+...+..+...+.+.|++++|++.+++ ..+...+..++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~ 137 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHH
Confidence 333444444444444444444444444443332 22333344444444444444444444443 12334444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006981 312 DFAGHAGKVEAAFEILQEAKNQGISVGII---SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388 (623)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 388 (623)
..+.+.|++++|.+.++.+.+.. |+.. ....++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcC
Confidence 44444444444444444444432 2211 01112222333455555555555555432 234555555555555555
Q ss_pred ChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 006981 389 QLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEV-GLMLLSQAKE 437 (623)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~ 437 (623)
++++|.+.|++..+. .| +..++..++..+...|+.++ +.++++++.+
T Consensus 215 ~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 215 RWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555555555543 23 44455555555555555543 3455555554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-14 Score=147.74 Aligned_cols=213 Identities=10% Similarity=-0.025 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHhhhCC------------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----C-
Q 006981 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP------------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-----G- 122 (623)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g- 122 (623)
..++..++.++...|+.++|++.|++.. +....+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4445555666666666677666665421 223456667777777777777777766665432 0
Q ss_pred C-CCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 006981 123 L-KADCKLYTTLITTCAKS--GKVDAMFEVFHEMVNAGIEPNVHTYGALIDG---CAKAGQVAKAFGAYGIMRSKNVKPD 196 (623)
Q Consensus 123 ~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (623)
. .....++..+..++.+. +++++|++.|++..+.. +-+...+..+... +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0 11234555554444443 34667777777766553 2234444444333 233455666666666665542 234
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHH
Q 006981 197 RVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (623)
Q Consensus 197 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (623)
..++..+...+.. .|+.++|.+.+++..... +.+..++..+...|.+.|++++|...|++..+.. +.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 4444444444333 245566666666655431 3345566666667777777777777777766654 4455555
Q ss_pred HHHHHHH
Q 006981 273 TIAINCC 279 (623)
Q Consensus 273 ~~li~~~ 279 (623)
..+...|
T Consensus 285 ~~lg~~y 291 (472)
T 4g1t_A 285 CQIGCCY 291 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-12 Score=141.54 Aligned_cols=375 Identities=14% Similarity=0.177 Sum_probs=272.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCC
Q 006981 29 LHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (623)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 107 (623)
..+...++..|.+.+|++++++....+. ++.+......++....+. +......+..+....+ ..-+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCC
Confidence 3345667799999999999999985432 234555555444433322 2333333333333222 3447788899999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+
T Consensus 1065 yEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 999999999862 12222333333 7788999999988652 577899999999999999999999976
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006981 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (623)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (623)
. -|...|..++.++.+.|++++|.+.+...++. .++....+.++.+|++.+++++..... + .+
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~----~~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 4 37788899999999999999999999877653 244334445889999999988644442 1 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (623)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (623)
+...|..+...|...|++++|...|... ..|..+...+.+.|++++|.+.+++. .+..+|..+-.
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 5567778999999999999999999985 37999999999999999999999876 35789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHH--hcCC
Q 006981 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACE--RKDD 424 (623)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~--~~g~ 424 (623)
+|...|++..|......+. .+...+..++.-|.+.|.+++|+.+++..+. +.|. ...|+-+...++ +.++
T Consensus 1259 acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHH
Confidence 9999999999998877643 4667788999999999999999999988774 3343 334544444444 4556
Q ss_pred HHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHh--cHHHHH
Q 006981 425 VEVGLMLLSQAKEDGVIP------NLVMFKCIIGMCSR--RYEKAR 462 (623)
Q Consensus 425 ~~~a~~~~~~~~~~g~~p------~~~~~~~li~~~~~--~~~~a~ 462 (623)
..++.++|..-. ++.| +...|.-++-.|.+ .+++|.
T Consensus 1332 lmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1332 MREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 666666665322 2333 34567777777654 455554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.9e-14 Score=146.49 Aligned_cols=375 Identities=10% Similarity=-0.070 Sum_probs=209.0
Q ss_pred HHHHHHHH----hcCCHHHHHHHHHHHHHc-------CCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---------
Q 006981 29 LHSYNRLI----RQGRISECIDLLEDMERK-------GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--------- 88 (623)
Q Consensus 29 ~~~~~~l~----~~g~~~~A~~l~~~m~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------- 88 (623)
...||.|. ..|++++|++.|++..+. ...+........++.++...|++++|...|++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 34555544 789999999999887642 1123445566778888888899999998887542
Q ss_pred --CCCHHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCChhHHHHHHHHHHHCCCCCC
Q 006981 89 --NPTLSTFNMLMSVCAS--SKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFEVFHEMVNAGIEPN 161 (623)
Q Consensus 89 --~~~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (623)
.....+++.+..++.. .+++++|+..|++..+.. |-++..+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1234566666555544 457999999999999875 4456666655555 345678889999999888764 445
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 006981 162 VHTYGALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (623)
Q Consensus 162 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (623)
..++..+...+.. .++.++|.+.+++..... +.+..++..+...|...|++++|...+.+..+.. +.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CChHHHH
Confidence 6667666655554 467889999999988764 4567888999999999999999999999988642 3345566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006981 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (623)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (623)
..+...|...+....+.. ...........+.+++|...|++....... +..++..+...+...
T Consensus 285 ~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHh
Confidence 666655543211100000 000000011112234555555555443221 223344455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHH
Q 006981 318 GKVEAAFEILQEAKNQGISVGII--SYSSLMG-ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (623)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (623)
|++++|...|++..+....+... .+..+.. .+.+.|+.++|...|++..+. .|+...+... ...+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHH
Confidence 66666666665555543222111 1111111 123455666666666655543 2332222111 12233
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 395 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
++++...+.. +.+..+|..+..++...|++++|.+.|++.++.
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444443321 234555666666666666666666666666553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.7e-12 Score=138.03 Aligned_cols=313 Identities=12% Similarity=0.130 Sum_probs=231.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHH
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 111 (623)
...++..|.+++|..+|++... ... . +..+....+++++|.++.++... ..+|..+..++.+.|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~-A---~~VLie~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTS-A---VQVLIEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHH-H---HHHHHHHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHH
Confidence 4556688999999999988631 111 1 11112356778999999887744 56688999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+..|.+. .|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++.... .+
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh-
Confidence 9998653 467788889999999999999999998877653 4444444588889999888853333 22
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHH
Q 006981 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (623)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (623)
.++...|..+...|...|++++|..+|... ..|..+...|.+.|+++.|.+.+++. .+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 346667777888889999999999999874 26888999999999999999999876 23478
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (623)
|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 888888898889988888766542 2255667788889999999999999998776554 3445566666666665
Q ss_pred --cCCHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHcCCChhhHHH
Q 006981 352 --AKNWQKALELYEHMKSIKLK------PTVSTMNALITALCDGDQLPKTME 395 (623)
Q Consensus 352 --~g~~~~A~~~~~~m~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 395 (623)
-+++.++.+.|..-.. ++ -+...|..++..|.+.|+++.|..
T Consensus 1327 y~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred CCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4556666666664332 12 245678899999999999998883
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-13 Score=140.87 Aligned_cols=349 Identities=11% Similarity=0.028 Sum_probs=208.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHH---HHHHHHhhhCCCCCHHHHHHHHHHHHc
Q 006981 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (623)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (623)
+......+.+.|++++|.++|++..+.|.. ... ..++..+...|+. ++|+..|++....++..+..+...+..
T Consensus 6 ~~~la~~~~~~g~~~~A~~~~~~aa~~g~~--~A~--~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 6 DQRLANEALKRGDTVTAQQNYQQLAELGYS--EAQ--VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAA 81 (452)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--TGG--GTCC----------------------------CHHHHHHHHHT
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHCCCH--HHH--HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 455667778999999999999999887732 221 1233333445666 899999988776677777777775665
Q ss_pred CC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 105 SK-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (623)
Q Consensus 105 ~~-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (623)
.+ ++++|+..|++..+.|. ++ .+..|...|...+..+. +.+.+......| +...+..|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 55 77889999999888763 33 66667777776655433 455555555443 3456667777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc----CC
Q 006981 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA----GQ 249 (623)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~----g~ 249 (623)
.++++......+.+.-...+...+..|...|.+.| +.++|.+.|.+....+ .++...+..|...|... ++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCCCCC
Confidence 55444443222222111223347777777888888 7888888888877643 44555445666666544 67
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHH
Q 006981 250 VDRAREVYKMIHKYNIKGTPEVYTIAINC-C--SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-----KVE 321 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~ 321 (623)
+++|...|++.. .+ ++..+..+... | ...+++++|.+.|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 888888888877 33 34666666666 3 45778888888888887776 4556666666665 44 788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhH
Q 006981 322 AAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKT 393 (623)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A 393 (623)
+|...|++.. .| +...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 8888887766 33 55666666666665 3377778887777776542 2334444445543 3456677
Q ss_pred HHHHHHHHHCC
Q 006981 394 MEVLSDMKSLG 404 (623)
Q Consensus 394 ~~l~~~m~~~g 404 (623)
...|+...+.|
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 77776666655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-13 Score=126.30 Aligned_cols=90 Identities=12% Similarity=-0.007 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006981 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388 (623)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 388 (623)
.+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+.. +.+...|..+...|.+.|
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444333322 1223333344444444444444444444433322 122333444444444444
Q ss_pred ChhhHHHHHHHH
Q 006981 389 QLPKTMEVLSDM 400 (623)
Q Consensus 389 ~~~~A~~l~~~m 400 (623)
++++|.+.|++.
T Consensus 222 ~~~~A~~~~~~a 233 (258)
T 3uq3_A 222 EYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.7e-13 Score=125.44 Aligned_cols=223 Identities=9% Similarity=0.023 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 166 (623)
..|..+...+...|++++|+..|+.+.+.. .+..++..+...+...|++++|.+.+++..+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456666666777777777777777776665 5566677777777777777777777776655320 011 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH
Q 006981 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (623)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~ 246 (623)
.+...|.+.|++++|...|++.... .|+. ..+.+.|++++|.+.++.+.... +.+...+..+...+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHH
Confidence 6666666667777777766666654 2332 23444455666666666655421 1223445555555556
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (623)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (623)
.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|...|++..+.... +...+..+...+.+.|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666666666666555543 334555555555555555555555555555543221 344444455555555555555555
Q ss_pred HHHHH
Q 006981 327 LQEAK 331 (623)
Q Consensus 327 ~~~~~ 331 (623)
++...
T Consensus 230 ~~~a~ 234 (258)
T 3uq3_A 230 LDAAR 234 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.2e-13 Score=122.76 Aligned_cols=81 Identities=16% Similarity=-0.004 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006981 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (623)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 277 (623)
..+..+...+.+.|++++|...|++..... +.+...+..+...+.+.|++++|...|++..+.+ +.+...+..+..
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 333334444444444444444444433321 1223333334444444444444444444444333 233334444444
Q ss_pred HHHhc
Q 006981 278 CCSQT 282 (623)
Q Consensus 278 ~~~~~ 282 (623)
.+.+.
T Consensus 82 ~~~~~ 86 (217)
T 2pl2_A 82 AYVAL 86 (217)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.5e-13 Score=123.10 Aligned_cols=197 Identities=15% Similarity=0.015 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
++...+..+...+.+.|++++|+..|+...+.. +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344555566666666666666666666666543 4455566666666666666666666666666543 33455566666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 006981 170 DGCAKA-----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (623)
Q Consensus 170 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 238 (623)
..+.+. |++++|+..|++..+.. +-+...+..+...+...|++++|...|++..+. . .+...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~--~~~~~~~ 155 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL--E--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--CCHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--c--cchHHHH
Confidence 666655 55555555555554432 223444444445555555555555555554442 1 3344444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (623)
.+..+|...|++++|...|++..+.+ +.+..++..+...+.+.|++++|...|++
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45555555555555555555554443 33444445555555555555555544443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-12 Score=119.09 Aligned_cols=201 Identities=11% Similarity=0.011 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777777777888888888887777664 4466777777777777788888887777777653 3356677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh
Q 006981 172 CAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (623)
|...|++++|.+.|+++...+..| +...+..+...+...|++++|.+.+.+..... +.+...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCH
Confidence 777777777777777776632233 34556666667777777777777777766531 23455666666677777777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
++|...++.+.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777766554 445566666666666777777777777666654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-11 Score=114.91 Aligned_cols=201 Identities=10% Similarity=-0.020 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...|..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556666666666666666666666666553 3445566666666666666666666666666543 334556666666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC
Q 006981 171 GCAKA-GQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (623)
Q Consensus 171 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (623)
.+... |++++|...|+++.+.+..|+ ...+..+...+...|++++|...+.++.... +.+...+..+...+.+.|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHcC
Confidence 66666 666666666666655222222 3455555566666666666666666655421 223445555555666666
Q ss_pred ChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 249 QVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
++++|...++.+.+.. + .+...+..+...+...|+.++|..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666555543 2 4455555555555556666666665555544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-11 Score=114.34 Aligned_cols=202 Identities=12% Similarity=0.006 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006981 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (623)
+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 35566667777777777777777777776653 3356667777777777777777777777776543 335566666667
Q ss_pred HHHcc-CCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006981 206 ACGQS-GAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (623)
Q Consensus 206 ~~~~~-g~~~~A~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (623)
.+... |++++|...++++... +..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD--PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS--TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 77777 7777777777776651 1122 24455666666666667777766666666554 344556666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (623)
++++|...+++..+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666665543212444455555555556666666666555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-11 Score=115.95 Aligned_cols=201 Identities=14% Similarity=0.071 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4566777777888888888888888877653 3466777778888888888888888888777653 3356677777777
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006981 207 CGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (623)
+...|++++|.+.++++.. .+..| +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 7788888888888877765 11233 34566666777777777777777777776654 44566677777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 286 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
++|...++++.+... .+...+..+...+...|+.++|.+.++.+.+.
T Consensus 192 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777777666433 24555666666666677777777777666654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-11 Score=112.53 Aligned_cols=221 Identities=12% Similarity=0.002 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 238 (623)
.++..+...|...|++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|.+..+. .+...+.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----NYSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----CCHHHHH
Confidence 344444444444444444444444444421 23344444444444 44445555444444432 1333444
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 239 ALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (623)
Q Consensus 239 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 310 (623)
.+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 44444444 455555555555544433 33444445555554 555555555555554443 23334444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006981 311 IDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (623)
Q Consensus 311 i~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 382 (623)
...|.. .+++++|...++...+.+ +...+..+...|.+ .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444 455555555555554443 23444455555555 555555555555555432 2444445555
Q ss_pred HHHc----CCChhhHHHHHHHHHHC
Q 006981 383 ALCD----GDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 383 ~~~~----~g~~~~A~~l~~~m~~~ 403 (623)
.|.+ .+++++|++.|++..+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555 55555555555555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-13 Score=127.69 Aligned_cols=241 Identities=10% Similarity=-0.048 Sum_probs=137.2
Q ss_pred HHHHHHHHHhhhCCC-------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 006981 75 KAIKEAFRFFKLVPN-------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (623)
Q Consensus 75 ~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 147 (623)
|++++|+..|+++.. .+..+|..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555544321 134556666777777777777777777777654 445667777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 006981 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (623)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (623)
+.|++..+.. +.+..++..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+.+.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 7777777653 335666777777777777777777777777654 3333333334444455567777777776555431
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006981 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (623)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 304 (623)
+++...+ .++..+...++.++|...++...+.... .+..++..+...|.+.|++++|...|++..... |+.
T Consensus 175 ---~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 175 ---DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp ---CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred ---CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 2222222 2455555666666666666665443211 013455666666666666666666666666543 211
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 006981 305 VFLSALIDFAGHAGKVEAAFEIL 327 (623)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~ 327 (623)
+.....++...|++++|++-+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 111233344455555554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=7.2e-12 Score=125.42 Aligned_cols=247 Identities=10% Similarity=0.060 Sum_probs=179.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
+...|+.+...+.+.|++++|+..++.+.+.. +-+..+|+.+..++...|+ +++|+..|++.++.. +.+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34567788888888888999999998888775 5567788888888888886 889998888888764 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH-cC
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AG 248 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~-~g 248 (623)
.++.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..|+++.... +.+...|+.+..++.+ .|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcC
Confidence 88888888888888888888764 4467788888888888888888888888887642 3456777888888887 55
Q ss_pred ChHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---
Q 006981 249 QVDRA-----REVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--- 318 (623)
Q Consensus 249 ~~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--- 318 (623)
..++| +..|++....+ +.+...|+.+...+.+.| ++++|++.+.++ +.. ..+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 54666 47777777765 556777887777777777 577777777776 332 235566677777776653
Q ss_pred ------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHH
Q 006981 319 ------KVEAAFEILQEA-KNQGISVGIISYSSLMG 347 (623)
Q Consensus 319 ------~~~~a~~~~~~~-~~~~~~~~~~~~~~li~ 347 (623)
..++|.++++.+ .+.. +.....|..+..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~ 361 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGR 361 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 246677777776 4432 223344444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=121.89 Aligned_cols=203 Identities=13% Similarity=0.058 Sum_probs=131.8
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
.....|..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345566777777777888888888888877654 4567777777888888888888888888877653 34667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (623)
..|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+.+.|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCC
Confidence 78888888888888888777653 3456677777777777788888888877776531 3345667777777777777
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 299 (623)
+++|...|+.+.+.. +.+..++..+...|.+.|++++|.+.++++.+..
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777777776664 4556677777777777777777777777776653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.3e-11 Score=112.70 Aligned_cols=224 Identities=12% Similarity=-0.010 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCHHH
Q 006981 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEV 271 (623)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (623)
+..++..+...+...|++++|.+.|.+..+ ..+..++..+...|.. .+++++|...|++..+.+ +..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 567788888899999999999999999886 2345678888899999 999999999999998876 6789
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006981 272 YTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYS 343 (623)
Q Consensus 272 ~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (623)
+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 9999999999 999999999999999875 67888888899999 999999999999999876 567888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 344 SLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (623)
Q Consensus 344 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (623)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 88888988 999999999999998753 57788888999999 999999999999998864 36677778
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCC
Q 006981 416 LVACER----KDDVEVGLMLLSQAKEDG 439 (623)
Q Consensus 416 l~a~~~----~g~~~~a~~~~~~~~~~g 439 (623)
...+.+ .+++++|.+.+++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 999999999999998865
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=125.86 Aligned_cols=222 Identities=11% Similarity=-0.011 Sum_probs=140.7
Q ss_pred cCCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 104 SSKDSEGAFQVLRLVQEAGL---KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (623)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (623)
..|++++|+..++.+.+... +.+..++..+...+...|++++|.+.|++..+.. +.+..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34677888888888876532 1235577777888888888888888888877764 3457778888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006981 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (623)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (623)
|...|++..+.. +.+..++..+...+.+.|++++|.+.|+++... .|+.......+..+...|++++|...++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888888877653 335667777777777888888888888777653 344334444444555667777777777666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
.... +++...+. ++..+...++.++|...+.+........ +...+..+...+.+.|++++|...+++..+.
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 5543 33333333 5555666666666666666654432110 1234444444555555555555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-12 Score=120.39 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+..+...+...|++++|...|++..+.. +.+..+|..+...|...|++++|...|++..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 3334444444444444444444443332 2223344444444444444444444444433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.9e-12 Score=119.64 Aligned_cols=230 Identities=10% Similarity=-0.066 Sum_probs=110.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHc
Q 006981 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQ 209 (623)
Q Consensus 132 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~ 209 (623)
.....+...|++++|+..|++..+.. +.+..++..+...|...|++++|+..|++..+.+..|+ ..+|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34444455555555555555555442 12233455555555555555555555555554221111 1224455555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
.|++++|.+.|++..... +.+..++..+...|...|++++|...|++..+.. +.+..+|..+...+...+++++|.
T Consensus 87 ~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554421 2233455555555555666666666655555542 334455555552222233666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 006981 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGK---VEAAFEILQEAKNQG-ISVG------IISYSSLMGACSNAKNWQKAL 359 (623)
Q Consensus 290 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~ 359 (623)
+.|++..+.... +...+..+...+...|+ .++|...+++..+.. ..|+ ..++..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666665554321 34444444455555554 444555555444321 0111 134444555555555555555
Q ss_pred HHHHHHHh
Q 006981 360 ELYEHMKS 367 (623)
Q Consensus 360 ~~~~~m~~ 367 (623)
+.|++..+
T Consensus 242 ~~~~~al~ 249 (272)
T 3u4t_A 242 AAWKNILA 249 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=124.03 Aligned_cols=248 Identities=11% Similarity=0.031 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (623)
...|..+...+.+.|++++|++.|++.++.. +-+..+|+.+...+.+.|+ +++|+..|++..... +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777888888899999999999888764 4467788888888888886 999999998888764 346778888888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCC
Q 006981 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-TGD 284 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 284 (623)
++...|++++|+..|+++.... +.+...|..+..++.+.|++++|+..|+++.+.+ +.+...|+.+...+.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 8888888888888888887642 3456778888888888888888888888888876 5677888888888888 555
Q ss_pred HHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 006981 285 WEFA-----CSVYDDMTKKGVIPDEVFLSALIDFAGHAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---- 353 (623)
Q Consensus 285 ~~~A-----~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 353 (623)
.++| +..|++.+..... +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+..+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 4666 4667776665433 5566666666666666 467777777666 22 2345566667777776653
Q ss_pred -----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 006981 354 -----NWQKALELYEHM-KSIKLKPTVSTMNALITAL 384 (623)
Q Consensus 354 -----~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~ 384 (623)
..++|.++++++ .+.. +.....|..+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 246777777776 4432 12234555444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.8e-12 Score=130.06 Aligned_cols=342 Identities=11% Similarity=-0.014 Sum_probs=233.8
Q ss_pred HHHHHhhhHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 006981 67 FFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDS---EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141 (623)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g- 141 (623)
+.....+.|++++|.++|++.. ..+...+..+...+...|+. ++|+..|++..+. ++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 3455667899999999998764 23455566677777778888 8999999988854 5566677777555555
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC--
Q 006981 142 ----KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV---AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-- 212 (623)
Q Consensus 142 ----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-- 212 (623)
++++|.+.|++..+.|. ++ .+..|...|...+.. .++.+.+......| +...+..|...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 77899999999998763 23 677777778776553 34555555555555 35566677777777774
Q ss_pred --HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----C
Q 006981 213 --VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG---QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----G 283 (623)
Q Consensus 213 --~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 283 (623)
.+.+..++...... .|+ .+..|...|.+.| +.++|.+.|++..+.+ +++...+..+...|... +
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCHHHHHHHHHHHHcC----CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 55555566555432 344 7788888999999 9999999999999988 66666667788888665 7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CH
Q 006981 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-A--GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NW 355 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~ 355 (623)
++++|.+.|++.. .| +...+..+... + ...++.++|...|++..+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 43 44555556555 3 46899999999999999887 6778888888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 006981 356 QKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEV 427 (623)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~ 427 (623)
++|...|++.. ..+...+..|...|.. ..+.++|...|++..+.|. |+ ....|...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHH
Confidence 99999999887 3467778788777776 4489999999999998763 33 33344444443 468999
Q ss_pred HHHHHHHHHHCCC
Q 006981 428 GLMLLSQAKEDGV 440 (623)
Q Consensus 428 a~~~~~~~~~~g~ 440 (623)
|...|+...+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999988774
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-12 Score=119.26 Aligned_cols=199 Identities=12% Similarity=0.028 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
..+|..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|+..|++..+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3455555666666666666666666666543 3345566666666666666666666666665542 2344555555556
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (623)
+...|++++|.+.++++.... +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 666666666666666555421 2234455555555555555555555555555443 334455555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (623)
+|...|++..+.... +..++..+...+...|++++|...++++.+
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 555555555443221 344444444455555555555555554444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-09 Score=114.76 Aligned_cols=404 Identities=8% Similarity=0.004 Sum_probs=268.6
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHH---HHHHHHHhhhCC-----CCCHHHH
Q 006981 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVP-----NPTLSTF 95 (623)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~-----~~~~~~~ 95 (623)
+..+|..|+ +.+.++.|+.+|+++...- |....+....+..-.+.+. ++.+..+|++.. +|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 455666666 6789999999999999876 5555555555555666778 999999998754 2888899
Q ss_pred HHHHHHHHcCCCh--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHH---------HcCChhHHHHHHHHHHH
Q 006981 96 NMLMSVCASSKDS--------EGAFQVLRLVQE-AGL-KA-DCKLYTTLITTCA---------KSGKVDAMFEVFHEMVN 155 (623)
Q Consensus 96 ~~li~~~~~~~~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 155 (623)
...+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+.++|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9888776665543 334477777654 455 44 4567877776644 23457788999999885
Q ss_pred CCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCC----C-----------C--C------H
Q 006981 156 AGIEPNVHTYGALIDGCAK-------------AGQVAKAFGAYGIMRS--KNV----K-----------P--D------R 197 (623)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~--~g~----~-----------p--~------~ 197 (623)
.....-..+|......-.. ..+++.|...+.++.. .++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 4222223344322221111 1223445555554321 111 1 1 0 1
Q ss_pred HHHHHHHHHHHccC-------CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhcCCCCCH
Q 006981 198 VVFNALITACGQSG-------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR-EVYKMIHKYNIKGTP 269 (623)
Q Consensus 198 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~~~~ 269 (623)
..|...+.---..+ ..+.+..+|++.... ++-+...|...+..+.+.|+.++|. .+|++.... ++.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 23444444322222 123456678887763 3445667877888888889998996 999998875 36677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKG---------VIPD------------EVFLSALIDFAGHAGKVEAAFEILQ 328 (623)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---------~~p~------------~~~~~~li~~~~~~g~~~~a~~~~~ 328 (623)
..|-..+...-+.|+++.|.++|+.+.... -.|+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 788888898999999999999999887631 0132 2357777777778899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC
Q 006981 329 EAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (623)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (623)
...+.........|...+..-.+.+ +.+.|.++|+...+. .+.+...|...+......|+.+.|..+|++.......+
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 9987611223344444433344444 589999999988765 34466777888888888899999999999988753222
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 408 --NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 408 --~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
....|...+.--.+.|+.+.+..+.+++.+.
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456888888888899999999999999874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.9e-10 Score=109.43 Aligned_cols=217 Identities=9% Similarity=0.098 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKV-------DAMFEVFHEMVN-AGIEPNVHTYGALIDGCA 173 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~ 173 (623)
++|..+|+++.+.. +.++..|..++..+.. .|++ ++|..+|++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56777777777653 5566777777766653 4665 777777777776 32 335567777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH-HcCCh
Q 006981 174 KAGQVAKAFGAYGIMRSKNVKPD-RV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQV 250 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~-~~g~~ 250 (623)
+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCH
Confidence 777777777777777764 343 22 67777777777777777777777776531 222333333322221 25677
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIP--DEVFLSALIDFAGHAGKVEAAFEIL 327 (623)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 327 (623)
+.|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777666553 4456666666666666777777777777666642 233 3445566666666666666666666
Q ss_pred HHHHHC
Q 006981 328 QEAKNQ 333 (623)
Q Consensus 328 ~~~~~~ 333 (623)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.1e-12 Score=127.12 Aligned_cols=303 Identities=14% Similarity=0.035 Sum_probs=153.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-C
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-N 161 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~ 161 (623)
....+......+...|++++|...|+.+.+.+ +.+ ..++..+...+...|++++|...+++.... +-.| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44455666667777788888888887777764 223 246667777777788888888777765432 1111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHH
Q 006981 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRA 216 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A 216 (623)
..++..+...|...|++++|...+++...... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44566677777777777777777776654210 001 2355555566666666 5555
Q ss_pred HHHHHHHhhCCCCC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 006981 217 FDVLAEMNAEVHPV--DP-DHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGT----PEVYTIAINCCSQTGDWEFA 288 (623)
Q Consensus 217 ~~~~~~m~~~~~~~--~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A 288 (623)
.+.+.+........ .+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 55555443210000 00 122344444555555555555555554433210 000 12344444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQKALELYEHMKS 367 (623)
Q Consensus 289 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (623)
...+++...... ..+..+ ...++..+...|.+.|++++|...+++..+
T Consensus 247 ~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 247 SEYYKKTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------------------hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 444444332100 001000 033445555555555565555555555432
Q ss_pred CCC-CCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCH
Q 006981 368 IKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCP-NTITYSILLVACERKDDV 425 (623)
Q Consensus 368 ~~~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~ 425 (623)
... .++ ..++..+...|...|++++|.+.+++..+ .+-.+ ...++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 100 011 33455566666666666666666665432 11111 233455555555555554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-11 Score=124.71 Aligned_cols=282 Identities=15% Similarity=0.026 Sum_probs=172.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 006981 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP 195 (623)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 195 (623)
......+......+...|++++|...|++..+.+ +.+ ..++..+...|...|++++|...|++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3445566667777778888888888888877753 223 346777777777888888888877765432 1111
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCC--------------------h
Q 006981 196 -DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQ--------------------V 250 (623)
Q Consensus 196 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~~ll~~~~~~g~--------------------~ 250 (623)
...++..+...+...|++++|...+.+....... .++ ..++..+...|...|+ +
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1335555666666677777777666665431000 011 2244444455555555 4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQE 329 (623)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (623)
++|...+++..+. + ...+..| ...++..+...+...|++++|...+.+
T Consensus 164 ~~A~~~~~~al~~----------------------------~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 164 QAAVDFYEENLSL----------------------------V---TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHHHH----------------------------H---HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------------------------H---HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444333221 0 0011101 123455555566666666666666665
Q ss_pred HHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhhHHHHHHH
Q 006981 330 AKNQ----GIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSD 399 (623)
Q Consensus 330 ~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (623)
..+. +.. ....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|.+.+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 5432 100 1123677777888888888888888887653210 011 55788899999999999999999999
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 400 MKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 400 m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
..+. +-.+ ...++..+...+...|++++|...+++..+.
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8652 1111 1557788889999999999999999988653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-10 Score=103.38 Aligned_cols=165 Identities=16% Similarity=0.050 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 313 (623)
..+|..+...|.+.|++++|+..|++..+.+ +.+..+|..+...|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3455555566666666666666666655554 445555566666666666666666666555544322 34444444555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhH
Q 006981 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (623)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (623)
+...++++.|...+....+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555554442 2344455555555555555555555555555432 23445555555555555555555
Q ss_pred HHHHHHHHH
Q 006981 394 MEVLSDMKS 402 (623)
Q Consensus 394 ~~l~~~m~~ 402 (623)
++.|++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=125.77 Aligned_cols=278 Identities=13% Similarity=0.052 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCCHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVH 163 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~ 163 (623)
..+..+...+...|++++|+..|+.+.+.+ +.+. .++..+...|...|++++|.+.|++..+. +- +....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344556667888899999999999888864 3333 46778888888899999999888887643 11 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHHH
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMRSK----N-VKPDRVVFNALITACGQSGA-----------------VDRAFDVLA 221 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 221 (623)
++..+...|...|++++|...|++.... + .+....++..+...|...|+ +++|.+.+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 6778888888888888888888876543 1 01123456666667777777 666666665
Q ss_pred HHhhCCC--CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 222 EMNAEVH--PV-DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYD 293 (623)
Q Consensus 222 ~m~~~~~--~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~ 293 (623)
+...... +. .....++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 5432100 00 011234455555566666666666666555432100 01 1244455555555555555555555
Q ss_pred HHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---
Q 006981 294 DMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK--- 369 (623)
Q Consensus 294 ~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 369 (623)
+....... .+. .....++..+...|...|++++|...+++..+..
T Consensus 288 ~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 288 RTLALAVELGER-------------------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCH-------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 44321000 000 0012344445555555555555555555443210
Q ss_pred -C-CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 006981 370 -L-KPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 370 -~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
. .....++..+...|.+.|++++|.+.|++..+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0 00123455566666666666666666666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-11 Score=124.80 Aligned_cols=279 Identities=16% Similarity=0.031 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHH
Q 006981 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRV 198 (623)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~ 198 (623)
..+..+...+...|++++|...|++..+.+ +.+. .+|..+...|...|++++|...|++.... +- +....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345556777888999999999999988764 2233 46788888888999999999988877542 11 12235
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHHHcCC-----------------hHHHHHHHH
Q 006981 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHP---VDPDHITIGALMKACANAGQ-----------------VDRAREVYK 258 (623)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~~~ll~~~~~~g~-----------------~~~A~~~~~ 258 (623)
++..+...|...|++++|...+.+....... ......++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 5667777778888888888877776542000 01113345555666666666 555555554
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 006981 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS- 336 (623)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~- 336 (623)
+..+. .... +..+ ...++..+...+...|++++|...+++..+....
T Consensus 208 ~al~~----------------------------~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 208 ENLKL----------------------------MRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHH----------------------------HHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------------------------HHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 43221 0000 0000 1224444455555555555555555554432100
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C----CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC----
Q 006981 337 VG----IISYSSLMGACSNAKNWQKALELYEHMKSIKL-K----PTVSTMNALITALCDGDQLPKTMEVLSDMKSL---- 403 (623)
Q Consensus 337 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 403 (623)
.+ ..++..+...|...|++++|...+++..+... . ....++..+...|...|++++|.+.+++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01 23667777788888888888888877654210 0 11467888999999999999999999987652
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 404 GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 404 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
+-.+ ...++..+...+...|++++|.+.+++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 2457788889999999999999999999874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-09 Score=107.17 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=155.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH-------HcCCh-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 006981 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACA-------NAGQV-------DRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (623)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (623)
++|..+|++..... +.+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45666666665431 234445555555543 34665 77888888877731245566788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 006981 280 SQTGDWEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQK 357 (623)
Q Consensus 280 ~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 357 (623)
.+.|++++|..+|++..+.... +.. .|..+...+.+.|++++|..+|++..+.. +.+...|........ ..|+.++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888775322 222 67777777788888888888888887764 234445544433322 3689999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCP--NTITYSILLVACERKDDVEVGLMLLSQ 434 (623)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (623)
|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887643 3467888999999999999999999999998863 455 466788888888899999999999999
Q ss_pred HHHC
Q 006981 435 AKED 438 (623)
Q Consensus 435 ~~~~ 438 (623)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-11 Score=118.55 Aligned_cols=62 Identities=8% Similarity=-0.084 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 376 TMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
++..+...|...|++++|...+++..+. +-.+ ...++..+...+.+.|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4444555555555555555555554331 0000 123455555566666666666666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.2e-11 Score=116.35 Aligned_cols=202 Identities=15% Similarity=0.100 Sum_probs=122.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCC-CCHHH
Q 006981 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIE-PNVHT 164 (623)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~ 164 (623)
.+......+...|++++|...++++.+.. +.+ ..++..+...+...|++++|.+.+++..+. +-. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455566778888888888888888764 333 356777888888888888888888776542 111 12456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHHHHH
Q 006981 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRAFDV 219 (623)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 219 (623)
+..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77788888888888888888887654210 011 2356667777777777 7777777
Q ss_pred HHHHhhCCC--C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 220 LAEMNAEVH--P-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KG----TPEVYTIAINCCSQTGDWEFACSV 291 (623)
Q Consensus 220 ~~~m~~~~~--~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~l 291 (623)
+.+...... + ......++..+...+...|++++|...+++..+... .+ ...++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 665432100 0 001123455556666666666666666665543210 00 112455555555555666665555
Q ss_pred HHHHH
Q 006981 292 YDDMT 296 (623)
Q Consensus 292 ~~~m~ 296 (623)
+++..
T Consensus 246 ~~~al 250 (338)
T 3ro2_A 246 YKKTL 250 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-10 Score=118.05 Aligned_cols=202 Identities=6% Similarity=-0.007 Sum_probs=93.3
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C--CCchHHHHHHH--HHHhhhHHHHHHH-----------HHhhh
Q 006981 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL-L--DMDKVYHARFF--NVCKSQKAIKEAF-----------RFFKL 86 (623)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~-~--~~~~~~~~~l~--~~~~~~~~~~~A~-----------~~~~~ 86 (623)
..+..-+..|-..++.+++++|..+++++.+.-. . ..+...+..+. +.....+.++.+. ..++.
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 3456667789999999999999999999875421 1 11222111111 1111223333333 33333
Q ss_pred CC--CCCHHH------HHHHHHHHHcCCChHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006981 87 VP--NPTLST------FNMLMSVCASSKDSEGAFQVLRLVQEAGL-KA----DCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (623)
Q Consensus 87 ~~--~~~~~~------~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m 153 (623)
+. +.+... +......+...|++++|+..++...+.-. .+ ...++..+...|...|++++|...+.+.
T Consensus 90 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 21 011111 11133344555666666666665554200 01 1234555555555666666665555554
Q ss_pred HHCC--C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006981 154 VNAG--I----EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAE 222 (623)
Q Consensus 154 ~~~g--~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (623)
.+.- . .....+++.+...|...|++++|...|++..+. +-.+ ...++..+...|...|++++|.+.+.+
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4310 0 001234445555555555555555555544321 0000 012344444444444554444444444
Q ss_pred Hh
Q 006981 223 MN 224 (623)
Q Consensus 223 m~ 224 (623)
..
T Consensus 250 al 251 (383)
T 3ulq_A 250 AI 251 (383)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-10 Score=116.09 Aligned_cols=227 Identities=9% Similarity=-0.013 Sum_probs=114.6
Q ss_pred HHcCCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHH--HHcCChhHHH-----------HHHHHHHHCCCCCCHHH
Q 006981 102 CASSKDSEGAFQVLRLVQEA--GLKAD--CKLYTTLITTC--AKSGKVDAMF-----------EVFHEMVNAGIEPNVHT 164 (623)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~--g~~~~--~~~~~~li~~~--~~~g~~~~A~-----------~~~~~m~~~g~~~~~~~ 164 (623)
+.+.+++++|..+.+++.+. .+..| ...|-.++..- .-.+.++.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 34567888888888777653 22233 23333333221 1123333333 555555432 111111
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--
Q 006981 165 ------YGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-- 231 (623)
Q Consensus 165 ------~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-- 231 (623)
+......+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|...+.+.........
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 122445566777888888877777653 1111 234566666777777777777777766543211110
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 006981 232 --PDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDDMTKK----GV 300 (623)
Q Consensus 232 --~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~ 300 (623)
....+++.+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|.+.|++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 11234555666666666777666666655432100 11 124555555566666666666665555441 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 301 -IPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 301 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
.....++..+...+.+.|++++|...+++.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 112334444555555555555555555544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-08 Score=105.96 Aligned_cols=394 Identities=12% Similarity=0.050 Sum_probs=267.2
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCC---hHHHHHH
Q 006981 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD---SEGAFQV 114 (623)
Q Consensus 41 ~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~---~~~A~~~ 114 (623)
..+-+..|++....+ |.+......++..+.+.+.++.+..+|+++. +.....|...+..-.+.++ ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 455666788888888 6777777778888887788999999998764 6677889999999888888 9999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHHcCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------
Q 006981 115 LRLVQEAG-LKADCKLYTTLITTCAKSGKV--------DAMFEVFHEMVN-AGI-EP-NVHTYGALIDGCA--------- 173 (623)
Q Consensus 115 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~--------- 173 (623)
|++..... .+|++..|..-+....+.++. +...++|+.... .|. .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998764 248888888888777666654 334578877654 465 44 4568888887544
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHH----------ccCCHHHHHHHHHHHhhCCCCC----C-----
Q 006981 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFN---ALITACG----------QSGAVDRAFDVLAEMNAEVHPV----D----- 231 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~~~~~----~----- 231 (623)
..++++.+..+|++.+......-..+|. .+-.... ...+++.|...+.++.....++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 2445788999999988532111123332 2222110 0112344555554432110111 0
Q ss_pred ------C-----C---HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-
Q 006981 232 ------P-----D---HITIGALMKACANAG-------QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC- 289 (623)
Q Consensus 232 ------~-----~---~~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~- 289 (623)
| + ...|...+..--..+ ..+.+..+|+++.... +.....|-..+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 1 134444444322222 1234566788887764 667889999999999999999996
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CC------------CHHHHHHHHHH
Q 006981 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI---------SV------------GIISYSSLMGA 348 (623)
Q Consensus 290 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~li~~ 348 (623)
++|++..... +.+...|...+....+.|+++.|.++|+.+.+... .| ...+|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999988642 33566677788888899999999999999876310 13 13467888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006981 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (623)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (623)
..+.|+.+.|+.+|.+..+.-.......|...+..-.+. ++.+.|.++|+...+. .+-+...+...+......|+.+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 888999999999999998751112233444333333344 4589999999998875 34466667788888888999999
Q ss_pred HHHHHHHHHHCC
Q 006981 428 GLMLLSQAKEDG 439 (623)
Q Consensus 428 a~~~~~~~~~~g 439 (623)
|+.+|++.++..
T Consensus 523 AR~lferal~~~ 534 (679)
T 4e6h_A 523 VKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHHHhc
Confidence 999999998753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-10 Score=100.25 Aligned_cols=166 Identities=16% Similarity=0.103 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+...|.+.|++++|+..+....... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 4445555555555555555555555554442 2244455555555555555555555555554432 2233444444444
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006981 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (623)
+...++++.|.+.+.+.... .+.+...+..+...|.+.|++++|+..|++..+.+ +.+..+|..+...|.+.|+++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 55555555555555554432 12234444455555555555555555555555543 344455555555555555555
Q ss_pred HHHHHHHHHHhC
Q 006981 287 FACSVYDDMTKK 298 (623)
Q Consensus 287 ~A~~l~~~m~~~ 298 (623)
+|++.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 555555555443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.8e-11 Score=122.87 Aligned_cols=215 Identities=11% Similarity=0.006 Sum_probs=167.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
.++++++.++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+...|.+.|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566677777655443 44677777888888888888 88888888887764 335778888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc--------C
Q 006981 186 GIMRSKNVKPDRVVFNALITACGQS---------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--------G 248 (623)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~--------g 248 (623)
++..+. .|+...+..+...+... |++++|.+.|++..+.. +.+...+..+..+|... |
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 888776 46667777788888888 88888888888877642 34567788888888887 8
Q ss_pred ChHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 249 QVDRAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (623)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (623)
++++|...|++..+.+ + .+...|..+...|...|++++|.+.|++..+.... +...+..+...+...|++++|.+
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998888765 4 57888889999999999999999999988876543 56678888888888888988888
Q ss_pred HHHHH
Q 006981 326 ILQEA 330 (623)
Q Consensus 326 ~~~~~ 330 (623)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 77665
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=120.94 Aligned_cols=217 Identities=10% Similarity=-0.028 Sum_probs=188.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006981 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (623)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 220 (623)
.++++.+.+++..... +.+...+..+...|...|++ ++|++.|++..+.. +.+...|..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3577788888776553 45788999999999999999 99999999998764 345789999999999999999999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------C
Q 006981 221 AEMNAEVHPVDPDHITIGALMKACANA---------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT--------G 283 (623)
Q Consensus 221 ~~m~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g 283 (623)
++.... .|+...+..+...|... |++++|...|++..+.. +.+...|..+...|... |
T Consensus 161 ~~al~~----~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALTH----CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHTT----CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhh----CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 999864 57778889999999999 99999999999999886 66789999999999998 9
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 284 DWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (623)
++++|+..|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999886431 278889999999999999999999999998875 44677889999999999999999998
Q ss_pred HHHHH
Q 006981 362 YEHMK 366 (623)
Q Consensus 362 ~~~m~ 366 (623)
+.++.
T Consensus 315 ~~~~~ 319 (474)
T 4abn_A 315 KGKTK 319 (474)
T ss_dssp TTTCC
T ss_pred hcccc
Confidence 87764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=119.35 Aligned_cols=176 Identities=14% Similarity=0.114 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA-------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI 158 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 158 (623)
..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666666666666666666666666542 11223445555566666666666666666555432 10
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 006981 159 -EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (623)
Q Consensus 159 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (623)
+....++..+...|...|++++|...|++..+.. ..... ...+....++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~--~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLG--KDHPDVAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHC--TTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcC--CCChHHHHHH
Confidence 1123344455555555555555555555443320 00000 0001112334
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 238 GALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
..+...+...|++++|...|+++.+. + .+....++..+...|...|++++|.+.++++.+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555554432 1 111233455566666666666666666665553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-10 Score=110.76 Aligned_cols=239 Identities=14% Similarity=0.057 Sum_probs=151.7
Q ss_pred CCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC-----------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----
Q 006981 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA----- 121 (623)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----- 121 (623)
|........++..+...|++++|..+|+++.. ....++..+...+...|++++|...++++.+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 34455666777788888999999999986532 23457888899999999999999999998864
Q ss_pred -CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 006981 122 -GL-KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GIEP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSK- 191 (623)
Q Consensus 122 -g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 191 (623)
+- +....++..+...|...|++++|.+.|++..+. +-.| ...++..+...|...|++++|+..|++....
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 223568889999999999999999999998764 2122 3456788888899999999999999888754
Q ss_pred -----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-----CCCCC-------HHHHHHHHHHHHHcCChHHH
Q 006981 192 -----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-----PVDPD-------HITIGALMKACANAGQVDRA 253 (623)
Q Consensus 192 -----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~-------~~~~~~ll~~~~~~g~~~~A 253 (623)
+..| ...++..+...+...|++++|.+.++++..... ...+. ...+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2122 234677777888888888888888888764200 00011 01111122222333344444
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
...++...... +....++..+...|.+.|++++|.+.|++..+
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444443322 22334555566666666666666666655443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.1e-09 Score=103.95 Aligned_cols=229 Identities=11% Similarity=-0.069 Sum_probs=158.6
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--C----CCHHHHH
Q 006981 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNI--K----GTPEVYT 273 (623)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~ 273 (623)
...+...|++++|...|.+....... .++ ..++..+...|...|+++.|...+++..+... . ....+++
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPF-VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456778888888888877653111 122 34566777888888888888888877654311 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 006981 274 IAINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISYS 343 (623)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 343 (623)
.+...|...|++++|.+.|.+..+. +..+ ...++..+...|...|++++|...+.+..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 8888888889999988888877652 1111 124566777788888999999999888876 33 23367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHcCCC---hhhHHHHHHHHHHCCCCCC-HHHHHHH
Q 006981 344 SLMGACSNAKNWQKALELYEHMKSIK----LKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSIL 415 (623)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~l 415 (623)
.+...|.+.|++++|...+++..+.. -+.....+..+...|...++ ..+|+..+++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 88889999999999999998876531 11223445666666777777 77777777762 22333 3456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006981 416 LVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~ 437 (623)
...+...|++++|...|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999988764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=9.4e-09 Score=103.25 Aligned_cols=266 Identities=11% Similarity=-0.045 Sum_probs=146.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHH
Q 006981 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRV----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMK 242 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~~ll~ 242 (623)
.+...|++++|...+++........+.. +++.+...+...|++++|.+.+.+....... .++ ..++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHH
Confidence 3344555555555555544432111111 2333444455555555555555554321000 111 122344555
Q ss_pred HHHHcCChHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--CHHHHHHHH
Q 006981 243 ACANAGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--P--DEVFLSALI 311 (623)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p--~~~~~~~li 311 (623)
.+...|++++|...+++..+. +.. | ...++..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 566666666666666655432 111 1 1234555666667777777777777766543211 1 234556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHH
Q 006981 312 DFAGHAGKVEAAFEILQEAKNQGISVG--IISYS----SLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALIT 382 (623)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~ 382 (623)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++..+....+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 667777777777777777654311111 11111 23344667888888888887776533211 1234566777
Q ss_pred HHHcCCChhhHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 383 ALCDGDQLPKTMEVLSDMKSL----GLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
.+...|++++|...+++.... |..++. .++..+..++...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888888888888876542 222222 2555566778888999999888887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-08 Score=102.69 Aligned_cols=233 Identities=12% Similarity=0.049 Sum_probs=126.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VHTYGAL 168 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~l 168 (623)
....+...|++++|...+++........+.. +++.+...+...|++++|.+.+++...... ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445566788888888888777654222222 455666777778888888888777654210 111 1235566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC--CHHHHHH
Q 006981 169 IDGCAKAGQVAKAFGAYGIMRSK----NVK--P-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGA 239 (623)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~~~ 239 (623)
...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+.+.........+ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66777788888888777766542 211 2 1234455666677777777777777766542111111 1234555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCC-CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHH
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT-----IAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSAL 310 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~l 310 (623)
+...+...|++++|...+++.......+ ....+. ..+..+...|++++|...+++.......+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 6666666777777777766654431111 101111 12233556666666666666554332111 01223344
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 006981 311 IDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~ 330 (623)
...+...|++++|...++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44455555555555555544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.5e-09 Score=104.21 Aligned_cols=232 Identities=10% Similarity=0.003 Sum_probs=166.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC---CC-CHHHH
Q 006981 167 ALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV---DP-DHITI 237 (623)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~-~~~~~ 237 (623)
.....+...|++++|+..|++..+... .++ ..++..+...|...|+++.|...+.+........ .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344456788999999999988865411 122 3467778888888999999988888765421111 11 24467
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 006981 238 GALMKACANAGQVDRAREVYKMIHKY----NI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFL 307 (623)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~ 307 (623)
+.+...|...|++++|...|++..+. +- .....++..+...|...|++++|.+.|++... .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 77888899999999999999887653 11 11234678888899999999999999998876 4332 36678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHH
Q 006981 308 SALIDFAGHAGKVEAAFEILQEAKNQG----ISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNA 379 (623)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~ 379 (623)
..+...+.+.|++++|...+++..+.. -+.....+..+...|...|+ +.+|...++... ..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHH
Confidence 888889999999999999999887642 12223456666677778888 777777777632 1222 345667
Q ss_pred HHHHHHcCCChhhHHHHHHHHHH
Q 006981 380 LITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
+...|.+.|++++|.+.|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-09 Score=94.27 Aligned_cols=24 Identities=4% Similarity=0.011 Sum_probs=9.3
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHH
Q 006981 376 TMNALITALCDGDQLPKTMEVLSD 399 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~ 399 (623)
.+..+...+...|++++|.+.+++
T Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 146 VHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333333333333333333333333
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-09 Score=94.70 Aligned_cols=59 Identities=14% Similarity=0.019 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (623)
.+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|...++..
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333334444333333333221 12333333333334444444444444333
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-08 Score=93.43 Aligned_cols=196 Identities=9% Similarity=0.000 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
.|+..|......+...|++++|+..|+...+...+++...+..+..++...|++++|++.|++..+.. +.+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677888888889999999999999998887643777777778889999999999999999988764 33567888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHH
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGA 239 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~~ 239 (623)
..|.+.|++++|+..|++..+.. +.+. ..|..+...+...|++++|.+.|.+..+. .|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----SCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----CCCcccHHHHHH
Confidence 99999999999999999888763 2334 45777778888889999999999988753 454 456666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 299 (623)
+...|...| ..+++.+...+ ..+...|.... ....+.+++|+..|++..+..
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 666665443 44455555544 33344444443 234566889999999888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.5e-09 Score=113.02 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 313 (623)
..+++.|...|.+.|++++|++.|++..+.. +.+..+|+.+...|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4567777777777777777777777777765 455677777777777777777777777777765433 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhH
Q 006981 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (623)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (623)
+.+.|++++|++.|++..+.. +-+...++.+..+|.+.|++++|.+.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777777654 3356677777778888888888888888777653 23566777788888888888888
Q ss_pred HHHHHHHHH
Q 006981 394 MEVLSDMKS 402 (623)
Q Consensus 394 ~~l~~~m~~ 402 (623)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.4e-09 Score=113.80 Aligned_cols=166 Identities=13% Similarity=0.065 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+..+|+.+..++.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+.. +-+..+|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678888888888888888888888888764 4457788888888888888888888888887764 335778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh
Q 006981 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (623)
.|.+.|++++|++.|++..+.. +-+...|+.+..++.+.|++++|++.|++..+.. +-+...+..+...+...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhcccH
Confidence 8888888888888888887653 3356778888888888888888888888877631 23456777888888888888
Q ss_pred HHHHHHHHHHHh
Q 006981 251 DRAREVYKMIHK 262 (623)
Q Consensus 251 ~~A~~~~~~~~~ 262 (623)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887776654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-08 Score=92.35 Aligned_cols=208 Identities=13% Similarity=0.011 Sum_probs=157.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (623)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (623)
+.|+..+......+...|++++|.+.|++..+...+++...+..+..++.+.|++++|+..|++..+.. +.+...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346678888999999999999999999999987633788888889999999999999999999999874 3356788889
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CHHHHHH
Q 006981 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-------ITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTI 274 (623)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 274 (623)
...+...|++++|.+.+++..... +.+. ..|..+...+...|++++|...|+++.+.+ +. +...|..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHH
Confidence 999999999999999999988742 2233 457778888899999999999999998864 33 4567788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (623)
Q Consensus 275 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (623)
+...|...| ...++++...+.. +...+..... ...+.+++|...+++..+.. +-+..+...+
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 888776544 3445555544322 3444444432 34567899999999998864 2334444433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3.2e-09 Score=101.65 Aligned_cols=133 Identities=15% Similarity=0.082 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA------GL-KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI 158 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 158 (623)
..++..+...+...|++++|+..++.+.+. +- +....++..+...|...|++++|.+.|++..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555566666666666666555533 11 112334555555555556666665555555432 00
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 006981 159 -EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 159 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (623)
+....++..+...|...|++++|...|++..+. +-.| ...++..+...+...|++++|.+.+++..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112334455555555555555555555555432 0011 12334444444555555555555554443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.00 E-value=5.5e-09 Score=99.95 Aligned_cols=158 Identities=11% Similarity=0.075 Sum_probs=84.1
Q ss_pred HcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHH
Q 006981 139 KSGKVDAMFEVFHEMVNA-------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKP-DRVVFNALI 204 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li 204 (623)
..|++++|...|++..+. ..+....++..+...|...|++++|+..|++.... +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666655441 11223456677777777777777777777776543 1112 234556666
Q ss_pred HHHHccCCHHHHHHHHHHHhhCC-----CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------C-CCCCHHHH
Q 006981 205 TACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVY 272 (623)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~ 272 (623)
..+...|++++|.+.+.+..... ...+....++..+...|...|++++|...|+++.+. . .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 66666667777766666665420 000112334455555555556666666655555443 0 01123344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 273 TIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
..+...|...|++++|...+++..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555555555555555544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.92 E-value=6.9e-08 Score=80.40 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (623)
|..+...+...|++++|..+++.+.+.+ +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+.+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4455555555566666666666555543 3345555555555555666666666665555443 2344455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 006981 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (623)
.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.+.++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 555555555555555432 2234445555555555555555555555544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=9.6e-08 Score=79.48 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
.+..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...++++.
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33333444444444444444444443332 2233344444444444444444444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-07 Score=88.79 Aligned_cols=179 Identities=13% Similarity=0.079 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
|+..|++..+.+ +++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554443 34444445566666666666666666666554431 1244555566666666666666666666665
Q ss_pred hCCCCC-----CHHHHHHHHHHHHc--cC--CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006981 190 SKNVKP-----DRVVFNALITACGQ--SG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (623)
Q Consensus 190 ~~g~~p-----~~~~~~~li~~~~~--~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (623)
+. .| +..+...|..++.. .| +..+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54 33 23334444444222 22 566666666665542 233223333334556666666666666554
Q ss_pred HhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 261 HKYN---------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 261 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.+.. -+.++.+...+|......|+ +|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 4320 02334444344444444454 555566655554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-07 Score=89.50 Aligned_cols=187 Identities=10% Similarity=0.041 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-C-CCHH
Q 006981 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-E-PNVH 163 (623)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-~~~~ 163 (623)
+.+...+-.+...+.+.|++++|+..|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+... . ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4455666666777777888888888888877653 223 56677777778888888888888888776521 1 1244
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH
Q 006981 164 TYGALIDGCAK--------AGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (623)
Q Consensus 164 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (623)
++..+..++.+ .|++++|+..|++..+.. |+ ......+.. +...... -.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~------~~ 148 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK------LA 148 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH------HH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH------HH
Confidence 56666677777 777888888887777652 22 222211100 0000000 00
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQT----------GDWEFACSVYDDMTKK 298 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~ 298 (623)
..+..+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 112344555666666666666666665543111 234555555555544 6666666666666654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.86 E-value=9.8e-07 Score=83.75 Aligned_cols=184 Identities=16% Similarity=0.115 Sum_probs=100.7
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (623)
Q Consensus 216 A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (623)
|...|++....+ .++..++..+..++...|++++|++++......+. ..+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~---~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDK---QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTS---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555554321 34444445566666667777777777766655442 13455666667777777777777777777
Q ss_pred HHhCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 295 MTKKGVIP-----DEVFLSALIDFAG--HAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 295 m~~~~~~p-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
|.+. .| +..+...+..++. ..| +..+|..+|+++.+.. |+..+...++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7654 33 2344444444422 223 6667777777765442 33233333444666777777777776655
Q ss_pred HhCC---------CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHH
Q 006981 366 KSIK---------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (623)
Q Consensus 366 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 410 (623)
.+.- -+.|..+.-.+|......|+ +|.++++++.+. .|+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 4310 02244455344444444454 666667666663 45543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.4e-07 Score=85.46 Aligned_cols=232 Identities=8% Similarity=0.054 Sum_probs=108.3
Q ss_pred hhhhHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhH--HHHHHHHHhhhCC---CCCHHHHHHH
Q 006981 25 VSEQLHSYNRLIRQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVP---NPTLSTFNML 98 (623)
Q Consensus 25 ~~~~~~~~~~l~~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~l 98 (623)
...-...+..+++.|.+ ++|+++++.++..+ |........-..+....+ .+++++++++.+. +.+..+|+.-
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R 109 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYR 109 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 33333444455555544 57888888887777 444444333333444444 5555665555432 3344455544
Q ss_pred HHHH----HcC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 99 MSVC----ASS---KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--AMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 99 i~~~----~~~---~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
...+ ... +++++++.+++.+.+.. +-+..+|+.-.-.+.+.|+++ ++++.++++.+.. +.|..+|+.-.
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~ 187 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4333 333 45555555555555543 334455555555555555555 5555555555543 23455555444
Q ss_pred HHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHhhCCCCCCCCHHHHHHHHH
Q 006981 170 DGCAKAGQ------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAEVHPVDPDHITIGALMK 242 (623)
Q Consensus 170 ~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~~~~~~~~~~~ll~ 242 (623)
..+.+.+. ++++++.++++.... +-|...|+.+-..+.+.|+..+ +..+..++...+..-..+...+..+..
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 44444443 444555554444432 2344444444444444443222 222333222110000123344444444
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 006981 243 ACANAGQVDRAREVYKMIH 261 (623)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~ 261 (623)
.|.+.|+.++|.++++.+.
T Consensus 267 ~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHH
Confidence 4444444444444444444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-07 Score=89.34 Aligned_cols=185 Identities=11% Similarity=0.019 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HHHH
Q 006981 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD-RVVF 200 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~ 200 (623)
+...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455555556666666666666666665542 112 44555566666666666666666666655421 111 2334
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHH
Q 006981 201 NALITACGQ--------SGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (623)
Q Consensus 201 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (623)
..+..++.. .|++++|...|+++... .|+ ......+.. +..+... ....
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~a~~~--------------~~~~~~~----~~~~ 150 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR----YPNHELVDDATQK--------------IRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH----CTTCTTHHHHHHH--------------HHHHHHH----HHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----CcCchhHHHHHHH--------------HHHHHHH----HHHH
Confidence 444555555 55566666666655543 122 111111100 0000000 0012
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHA----------GKVEAAFEILQEAKNQ 333 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 333 (623)
+..+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...++.+.+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 3455666677777777777777766543211 123455555555544 5666666666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=7.9e-08 Score=92.77 Aligned_cols=206 Identities=10% Similarity=0.048 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHH
Q 006981 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY----NIKG-TPEVYTIAINCCSQTGDWE 286 (623)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~ 286 (623)
++++|...|.+. ...|...|++++|...|.+..+. +-++ ...+|+.+...|.+.|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477777777665 33567788999998888877553 2111 1457888888899999999
Q ss_pred HHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCH
Q 006981 287 FACSVYDDMTKKGVI-PD----EVFLSALIDFAGHA-GKVEAAFEILQEAKNQGISV-G----IISYSSLMGACSNAKNW 355 (623)
Q Consensus 287 ~A~~l~~~m~~~~~~-p~----~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~ 355 (623)
+|+..+++....... .+ ..++..+...|... |++++|+..+++..+..... + ..+++.+...|.+.|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 998888877653110 01 34677777788885 88888888888776532110 1 34677778888888888
Q ss_pred HHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--h
Q 006981 356 QKALELYEHMKSIKLKPTV------STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TYSILLVACE--R 421 (623)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------t~~~ll~a~~--~ 421 (623)
++|...|++..+....... ..|..+..++...|++++|...|++..+ +.|+.. .+..++.++. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 8888888888765432221 1566677778888888888888888765 234321 2344555554 3
Q ss_pred cCCHHHHHHHHHHHH
Q 006981 422 KDDVEVGLMLLSQAK 436 (623)
Q Consensus 422 ~g~~~~a~~~~~~~~ 436 (623)
.+++++|...|+++.
T Consensus 253 ~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFM 267 (292)
T ss_dssp TTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhccCC
Confidence 456777777775543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-06 Score=89.03 Aligned_cols=356 Identities=12% Similarity=0.048 Sum_probs=163.6
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHcCCC-hHHHHH
Q 006981 38 QG-RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKD-SEGAFQ 113 (623)
Q Consensus 38 ~g-~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~-~~~A~~ 113 (623)
.| +++.|+.+|+.+...- |. |..+.+..+|++.. .|++..|...+....+.++ .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 45 3677777777776542 21 44677777777654 3677788777777666553 345666
Q ss_pred HHHHHHHc-CC-CCCHHHHHHHHHHHH----HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 114 VLRLVQEA-GL-KADCKLYTTLITTCA----KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 114 ~~~~m~~~-g~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
+|+..... |. +.+...|...+..+. ..++++.+.++|++.+......-...|...... .+......+.++..+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHH
Confidence 77766653 32 335666776666543 235677788888888764211111222222211 111111122222211
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC-------ChHHHHHHHHHH
Q 006981 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG-------QVDRAREVYKMI 260 (623)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g-------~~~~A~~~~~~~ 260 (623)
.. +.+..|..++..+.....+ .+...|...+..-...+ ..+.+..+|+++
T Consensus 149 ~~---------------------~~y~~ar~~y~~~~~~~~~--~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 149 TL---------------------PIFQSSFQRYQQIQPLIRG--WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HH---------------------HHHHHHHHHHHHHHHHHHT--CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred Hh---------------------HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 10 1112222222221110000 01223333333211110 022344555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------
Q 006981 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ------- 333 (623)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------- 333 (623)
.... +.++..|...+..+.+.|+.+.|..++++.... |+...+.. .|+.....++. ++.+.+.
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC-----
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccc
Confidence 5542 444555665566566666666666666665554 22211111 11111111111 1111110
Q ss_pred --C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CChhhHHHHHHHHHHCCCCC
Q 006981 334 --G---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCP 407 (623)
Q Consensus 334 --~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p 407 (623)
+ ......+|...+..+.+.+..+.|..+|++. +.. ..+...|......-... ++.+.|..+|+...+.- +-
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~ 352 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PD 352 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TT
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CC
Confidence 0 0011244555566666666777777777777 321 12334443222222222 25777777777776642 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (623)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 452 (623)
+...+...++-..+.|+.+.|+.+|+++. .....|...++
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~ 392 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIE 392 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 23344555665666777777777777652 23455555554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.1e-08 Score=85.63 Aligned_cols=165 Identities=12% Similarity=0.140 Sum_probs=97.0
Q ss_pred cCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCHHHHHHHH
Q 006981 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLM 99 (623)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li 99 (623)
|............+.+.|++++|...|++..+.+ |.+...+..++..+...|++++|+..|++... |+...+..+.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHH
Confidence 3334445555666778888888888888777665 55666666677777777777777777776642 2333332221
Q ss_pred HH-HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006981 100 SV-CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQ 177 (623)
Q Consensus 100 ~~-~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~ 177 (623)
.. +...+....|+..++...+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 11 112222334566666666543 3346666666666667777777777776666553211 23456666666666666
Q ss_pred HHHHHHHHHHHH
Q 006981 178 VAKAFGAYGIMR 189 (623)
Q Consensus 178 ~~~A~~~~~~m~ 189 (623)
.++|...|++..
T Consensus 160 ~~~A~~~y~~al 171 (176)
T 2r5s_A 160 GNAIASKYRRQL 171 (176)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 666666666544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-07 Score=86.27 Aligned_cols=193 Identities=9% Similarity=-0.012 Sum_probs=133.1
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcC
Q 006981 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (623)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (623)
...+.....+++.|++++|+..|++..+.+ |.+...+.... ... .........+.+...+.+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~--~~~-------------~~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTN--VDK-------------NSEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHH--SCT-------------TSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhh--hcc-------------hhhhhHHHHHHHHHHHHHC
Confidence 344445566779999999999999999876 44433322100 000 0011223345577888999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFG 183 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~ 183 (623)
|++++|+..|+...+.. +.+...+..+..++...|++++|...|++..+.. +.+..+|..+...|...|+ ...+..
T Consensus 68 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999998875 5578889999999999999999999999998874 4467888888888766654 445566
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 006981 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (623)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~ 243 (623)
.+..... ..|....+.....++...|++++|...|++..+ +.|+......+.+.
T Consensus 146 ~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~----l~P~~~~~~~l~~i 199 (208)
T 3urz_A 146 DYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL----RFPSTEAQKTLDKI 199 (208)
T ss_dssp HHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT----TSCCHHHHHHHHHH
T ss_pred HHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 6655542 223333444455666778999999999999875 46777766666553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.9e-08 Score=104.39 Aligned_cols=169 Identities=8% Similarity=-0.038 Sum_probs=111.9
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHc
Q 006981 36 IRQGRISECIDLLEDME--------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (623)
Q Consensus 36 ~~~g~~~~A~~l~~~m~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (623)
...|++++|++.|++.. +.. |.+...+..++..+...|++++|+..|++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 56778888888888777 443 4555556666666667777777777776653 4566677777777777
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (623)
.|++++|+..|++..+.. +.+...+..+..++.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777654 3455667777777777777777 77777776653 33566777777777777777777777
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHccC
Q 006981 185 YGIMRSKNVKPD-RVVFNALITACGQSG 211 (623)
Q Consensus 185 ~~~m~~~g~~p~-~~~~~~li~~~~~~g 211 (623)
|++..+. .|+ ...+..+..++...+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccC
Confidence 7776654 333 445555555554433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-07 Score=84.58 Aligned_cols=136 Identities=10% Similarity=-0.047 Sum_probs=57.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 006981 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (623)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (623)
+...+.+.|++++|...+++..+.. +-+...+..+..+|...|++++|...|++..+.. +.+...|..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 3344444445555555444444432 2234444445555555555555555555544432 1234444444444433332
Q ss_pred --hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 390 --LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (623)
Q Consensus 390 --~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (623)
.+.+...++.... ..|....+.....++...|++++|...|++.++ +.|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 2223333333221 111122222233334445555555555555554 345544444433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-07 Score=88.98 Aligned_cols=211 Identities=12% Similarity=0.065 Sum_probs=100.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCCHHHH
Q 006981 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKPD-RVVFNALITACGQSGAVDRA 216 (623)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A 216 (623)
++++|...|++. ...|...|++++|...|.+.... |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 23456667777777777665432 21111 34555666666666666666
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 006981 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-GDWEFACSVYDDM 295 (623)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m 295 (623)
...+++..... ...|+...+ ..+++.+...|... |++++|+..|++.
T Consensus 97 ~~~~~~Al~l~-----------------~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~A 144 (292)
T 1qqe_A 97 VDSLENAIQIF-----------------THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELA 144 (292)
T ss_dssp HHHHHHHHHHH-----------------HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------------HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 66665544310 000111000 12344444444443 5555555555444
Q ss_pred HhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 296 TKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI------ISYSSLMGACSNAKNWQKALELYEH 364 (623)
Q Consensus 296 ~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~ 364 (623)
.+.... .+ ..++..+...+.+.|++++|...|++..+....... ..+..+..++...|++++|...|++
T Consensus 145 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 332100 00 223445555555555566665555555554322111 1345555556666666666666666
Q ss_pred HHhCCCCCCH------HHHHHHHHHHH--cCCChhhHHHHHHHHH
Q 006981 365 MKSIKLKPTV------STMNALITALC--DGDQLPKTMEVLSDMK 401 (623)
Q Consensus 365 m~~~~~~~~~------~~~~~li~~~~--~~g~~~~A~~l~~~m~ 401 (623)
..+.. |+. ..+..++.+|. ..+++++|+..|+++.
T Consensus 225 al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 225 GQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp GGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 55421 221 12333444443 3455666666665544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=8.8e-08 Score=82.04 Aligned_cols=143 Identities=8% Similarity=-0.060 Sum_probs=108.8
Q ss_pred HHHHHhhhHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 006981 67 FFNVCKSQKAIKEAFRFFKLVPNP---TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (623)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (623)
++.+..+.|++++|+..+....+. +...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 455667789999999999876543 44567778888999999999999999998875 55788999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 006981 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-YGIMRSKNVKPDRVVFNALITACGQSGA 212 (623)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (623)
++|...|++..+.. +-+..+|..+...|.+.|+.++|.+. +++..+.. +-+..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999988864 34678888999999999998776655 47776653 3356667666666655553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-07 Score=89.66 Aligned_cols=156 Identities=12% Similarity=0.113 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHH-HHHHcCC
Q 006981 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLM-SVCASSK 106 (623)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li-~~~~~~~ 106 (623)
.....+.+.|++++|...|++..+.. |.+...+..++..+...|++++|...|+++. .|+........ ..+...+
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhc
Confidence 33344445556666666665555554 4444445555555555555555555555543 22322221111 1233444
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
+.+.|...+++..+.. +.+...+..+...+...|++++|.+.|.++.+.... .+...+..++..+...|+.++|...|
T Consensus 200 ~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 200 ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 4555555555555443 334455555555555555555555555555544211 01344555555555555555555555
Q ss_pred HHH
Q 006981 186 GIM 188 (623)
Q Consensus 186 ~~m 188 (623)
++.
T Consensus 279 r~a 281 (287)
T 3qou_A 279 RRQ 281 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-06 Score=80.23 Aligned_cols=174 Identities=14% Similarity=-0.023 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 006981 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAY 185 (623)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 185 (623)
+|++.|+...+.| ++..+..|...|...+++++|++.|++..+.| +...+..|...|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555566655543 55566666666666777777777777766653 45556666666665 5 677777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHH----cCChHHHH
Q 006981 186 GIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACAN----AGQVDRAR 254 (623)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~----~g~~~~A~ 254 (623)
++..+.| +...+..|...|.. .++.++|.+.|.+.... .++ ...+..|...|.. .+++++|.
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 7766554 45556666666655 56677777777666543 221 4555666666666 55666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 006981 255 EVYKMIHKYNIKGTPEVYTIAINCCSQT-G-----DWEFACSVYDDMTKKG 299 (623)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~~ 299 (623)
..|++..+. +.+...+..|...|... | ++++|...|+...+.|
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666666654 12234555555555432 2 5666666666665554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.9e-08 Score=104.01 Aligned_cols=154 Identities=16% Similarity=0.043 Sum_probs=80.0
Q ss_pred HHcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 138 AKSGKVDAMFEVFHEMV--------NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (623)
Q Consensus 138 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (623)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 34455555555555554 221 2234445555555555555555555555555432 2244455555555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
.|++++|.+.|++..+.. +.+...+..+..+|.+.|++++ ...|+++.+.+ +.+...|..+...+.+.|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555554421 1233445555555555566555 55555555544 344555555555666666666666
Q ss_pred HHHHHHHhC
Q 006981 290 SVYDDMTKK 298 (623)
Q Consensus 290 ~l~~~m~~~ 298 (623)
+.|++..+.
T Consensus 555 ~~~~~al~l 563 (681)
T 2pzi_A 555 RTLDEVPPT 563 (681)
T ss_dssp HHHHTSCTT
T ss_pred HHHHhhccc
Confidence 665555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.3e-07 Score=88.07 Aligned_cols=163 Identities=10% Similarity=0.000 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 006981 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI- 204 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li- 204 (623)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++.... .|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 34455555566666666666666666665543 234555666666666666666666666665544 23333222221
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhc
Q 006981 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQT 282 (623)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 282 (623)
..+...++.++|...+++..... +.+...+..+...+...|++++|...|..+.+.+ +.+ ...+..++..|...
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHc
Confidence 22444455555666665555431 2345555666666666666666666666666554 222 45666666666666
Q ss_pred CCHHHHHHHHHHH
Q 006981 283 GDWEFACSVYDDM 295 (623)
Q Consensus 283 g~~~~A~~l~~~m 295 (623)
|+.++|...+++.
T Consensus 269 g~~~~a~~~~r~a 281 (287)
T 3qou_A 269 GTGDALASXYRRQ 281 (287)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 6666666666554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-07 Score=82.16 Aligned_cols=160 Identities=12% Similarity=0.089 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHh
Q 006981 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGH 316 (623)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~-~~~ 316 (623)
..+...+.+.|++++|...|++..+.+ +.+...+..+...+.+.|++++|...|++..... |+...+...... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 344555666777777777777665544 4456667777777777777777777777665443 233222211111 111
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhhHHH
Q 006981 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTME 395 (623)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 395 (623)
.+....|...+++..+.. +-+...+..+...+.+.|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 122223556666655543 2345666666667777777777777777766553222 24466666667777777777777
Q ss_pred HHHHHH
Q 006981 396 VLSDMK 401 (623)
Q Consensus 396 l~~~m~ 401 (623)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.71 E-value=8.6e-06 Score=78.04 Aligned_cols=113 Identities=9% Similarity=0.017 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----AKA---GQVA 179 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~~ 179 (623)
++|+.+++.++..+ +-+...|+.--..+...+ +++++++.++.+.... +-+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 44555555555443 223344444444444444 5555555555554432 22333343332222 222 3444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHh
Q 006981 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--RAFDVLAEMN 224 (623)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~ 224 (623)
+++..++++.+.. +-+..+|+.-.-.+.+.|.++ ++++.++++.
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i 173 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI 173 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 4444444444332 223344443333333334333 4444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-06 Score=78.95 Aligned_cols=176 Identities=11% Similarity=-0.033 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----CHHHHHHHH
Q 006981 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG----AVDRAFDVL 220 (623)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~ 220 (623)
+|++.|++..+.| +..++..|...|...+++++|+..|++..+.| +...+..|...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777654 67777778888888888888888888887765 56666667777766 5 788888888
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHH
Q 006981 221 AEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQ----TGDWEFACSV 291 (623)
Q Consensus 221 ~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l 291 (623)
.+.... .+...+..|...|.. .+++++|..+|++..+.+.. ..+.++..|...|.. .+++++|...
T Consensus 77 ~~A~~~-----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEA-----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHT-----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHC-----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 777652 345566666666665 67777888887777766521 125666777777766 6677777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 006981 292 YDDMTKKGVIPDEVFLSALIDFAGHA-G-----KVEAAFEILQEAKNQG 334 (623)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 334 (623)
|++..+.+- +...+..+...|... | +.++|...|+...+.|
T Consensus 152 ~~~A~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777766521 233445555555432 2 6677777777666655
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-06 Score=78.92 Aligned_cols=202 Identities=9% Similarity=-0.016 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-AD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTY 165 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~ 165 (623)
...+..+...+.+.|++++|+..|+.+.+.... |. ...+..+..+|.+.|++++|+..|+++.+.. |+. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 344455556666677777777777776664321 11 2455566667777777777777777766542 221 133
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHH
Q 006981 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKAC 244 (623)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~~ll~~~ 244 (623)
..+..++.+.+.. .+ ..|..+...+...|+.++|...|+++... .|+. .+..+....
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~P~~~~a~~a~~~l- 139 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG----YPNSQYTTDATKRL- 139 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT----CTTCTTHHHHHHHH-
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH----CcCChhHHHHHHHH-
Confidence 3333333332210 00 01112222334456777888888777754 2321 122111100
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 006981 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEA 322 (623)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~ 322 (623)
..+...+. .....+...|.+.|++++|+..|+++.+...... ...+..+..++.+.|+.++
T Consensus 140 ---------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 140 ---------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp ---------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 00000000 1123455667777777777777777776532211 1356667777777777777
Q ss_pred HHHHHHHHHHCC
Q 006981 323 AFEILQEAKNQG 334 (623)
Q Consensus 323 a~~~~~~~~~~~ 334 (623)
|.+.++.+...+
T Consensus 203 A~~~~~~l~~~~ 214 (225)
T 2yhc_A 203 AEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhC
Confidence 777777776654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-06 Score=78.92 Aligned_cols=203 Identities=9% Similarity=-0.028 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-P-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV----VF 200 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~ 200 (623)
...+..+...+.+.|++++|...|+++.+.... | ....+..+..+|.+.|++++|+..|++..+.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 344555666677777777777777777764211 1 13456666777777777777777777776542 2211 23
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006981 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (623)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (623)
..+..++...+.. .+. .+..+...+...|++++|...|+.+.+.. +.+..++.+....-
T Consensus 82 ~~~g~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~- 140 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----ALQ--------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV- 140 (225)
T ss_dssp HHHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH-
T ss_pred HHHHHHHHhhhhh-----hhh--------------hhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH-
Confidence 3333333322210 000 11122233445678888888888888764 33333332221110
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 006981 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAKNWQKA 358 (623)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 358 (623)
.+...+. .....+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|+.++|
T Consensus 141 ---------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 141 ---------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp ---------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 0111110 112345677889999999999999998864221 135688899999999999999
Q ss_pred HHHHHHHHhCC
Q 006981 359 LELYEHMKSIK 369 (623)
Q Consensus 359 ~~~~~~m~~~~ 369 (623)
.+.++.+...+
T Consensus 204 ~~~~~~l~~~~ 214 (225)
T 2yhc_A 204 EKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 99999988764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.9e-07 Score=95.12 Aligned_cols=148 Identities=11% Similarity=-0.026 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006981 75 KAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (623)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 151 (623)
|++++|...|++.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455555554432 2234444555555555555555555555554432 2334444455555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHhh
Q 006981 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS---GAVDRAFDVLAEMNA 225 (623)
Q Consensus 152 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 225 (623)
+..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 544432 2234444445555555555555555555444432 22334444444444444 455555555544443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-07 Score=80.44 Aligned_cols=137 Identities=9% Similarity=-0.024 Sum_probs=59.9
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006981 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 218 (623)
..|++++|++.+....... +.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 3344455554444443221 1112233344445555555555555555554432 2234445555555555555555555
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHh
Q 006981 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTIAINCCSQ 281 (623)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~ 281 (623)
.|++..+.. +.+..++..+...|.+.|+.++|.+. +++..+.. |.++.+|......+..
T Consensus 87 ~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 87 CYRRSVELN---PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHC---TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 555544321 12234444455555555554443332 34444433 3344444444443333
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-06 Score=93.57 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=105.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
.|++++|.+.+++..+.. +.+...+..+...+.+.|++++|...|++..+.+ +.+...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467788888888876531 3346677788888888888888888888888765 556778888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 006981 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMK 366 (623)
Q Consensus 290 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 366 (623)
+.+++..+.... +...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888888776433 56777778888888888888888888877764 34567777788888888 88888888888877
Q ss_pred hCC
Q 006981 367 SIK 369 (623)
Q Consensus 367 ~~~ 369 (623)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-06 Score=76.86 Aligned_cols=126 Identities=14% Similarity=-0.015 Sum_probs=102.7
Q ss_pred HHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 006981 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (623)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (623)
.++..+...|++++|+..|++..+++...|..+...+...|++++|+..++...+.. +.+...+..+..+|...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 445556667888999999988887888889999999999999999999999988775 5577888889999999999999
Q ss_pred HHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 146 MFEVFHEMVNAGIE--------------P-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (623)
Q Consensus 146 A~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (623)
|.+.|++..+.... | +...+..+...|.+.|++++|...|++..+..
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999998875311 1 12678888888899999999999999888763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.9e-07 Score=85.70 Aligned_cols=229 Identities=12% Similarity=-0.009 Sum_probs=147.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 116 (623)
..|++++|.+++++..+... .. .+...+++++|...|.+ ....+...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 45778899999988776432 10 01112456666666554 3556777888888888887
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 117 LVQEAGL---KA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPN--VHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 117 ~m~~~g~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
+..+... .+ -..+|+.+...|.+.|++++|+..|++..+. | .+. ..+++.+...|.+ |++++|+..|
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 7764311 11 1347788888888888888888888876542 2 121 3567778888877 8888888888
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC--CCCCC-HHHHHHHHHHHHHcCChHHHHHHH
Q 006981 186 GIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH--PVDPD-HITIGALMKACANAGQVDRAREVY 257 (623)
Q Consensus 186 ~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~ 257 (623)
++.... |-.+ ...+++.+...+.+.|++++|...|++...... +..+. ...+..+...+...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 877643 1100 135677788888888999998888887764211 11222 235666777777889999999999
Q ss_pred HHHHhcCCC--CC--HHHHHHHHHHHHhcCCHHHHHHH
Q 006981 258 KMIHKYNIK--GT--PEVYTIAINCCSQTGDWEFACSV 291 (623)
Q Consensus 258 ~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~l 291 (623)
++.. .... .. ......++..+ ..|+.+.+.++
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8887 4211 11 12344555555 56777666653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-06 Score=83.74 Aligned_cols=199 Identities=13% Similarity=0.045 Sum_probs=113.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 006981 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (623)
.|++++|.+++++..+.. +.. + +...+++++|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHH
Confidence 466777777777665431 110 0 11135666666666543 34566777888887
Q ss_pred HHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCC--HHHHHHHHHHHHhcCCHHHHH
Q 006981 255 EVYKMIHKYNIK-----GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--V-IPD--EVFLSALIDFAGHAGKVEAAF 324 (623)
Q Consensus 255 ~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~-~p~--~~~~~~li~~~~~~g~~~~a~ 324 (623)
..|.+..+.... .-..+|+.+...|.+.|++++|+..|++..+.- . .|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 777766543110 012466777777777777777777777654321 0 111 2345556666666 7777777
Q ss_pred HHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhhHH
Q 006981 325 EILQEAKNQGIS-----VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTM 394 (623)
Q Consensus 325 ~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~ 394 (623)
..+++..+.... ....+++.+...|.+.|++++|...|++..+. +..+. ...+..+...+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777766543100 01345666667777777777777777766542 11111 124555555666667777777
Q ss_pred HHHHHHH
Q 006981 395 EVLSDMK 401 (623)
Q Consensus 395 ~l~~~m~ 401 (623)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777766
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=7.8e-05 Score=72.20 Aligned_cols=183 Identities=6% Similarity=-0.020 Sum_probs=116.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (623)
++.+.....+.+..++|+++++.+...+ +-+..+|+.--..+...| ++++++++++.+.... +.+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3344444455556677888888888765 445667777777777777 4888888888888765 446777777766666
Q ss_pred hc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 006981 174 KA-G-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--------RAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (623)
Q Consensus 174 ~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~~~ll~~ 243 (623)
+. + +++++++.++++.+.. +-|..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|...|+.....
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~N~SAW~~R~~l 210 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GRNNSAWGWRWYL 210 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 65 6 7788888888887664 346666665444444443333 6666666666532 3455666666555
Q ss_pred HHHcCC-------hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006981 244 CANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (623)
Q Consensus 244 ~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (623)
+.+.++ ++++++.+++....+ +.|...|+-+-..+.+.|+
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 555554 466666666666655 5566666665555554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.49 E-value=9.5e-05 Score=76.48 Aligned_cols=354 Identities=8% Similarity=-0.027 Sum_probs=188.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhH-HHHHHHHHhhhCC------CCCHHHHHHHHHHHHc----C
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-AIKEAFRFFKLVP------NPTLSTFNMLMSVCAS----S 105 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~------~~~~~~~~~li~~~~~----~ 105 (623)
-.|.++.|..+|++....- | +..+....+....+.+ ..+....+|+... ..+...|...+..+.. .
T Consensus 26 P~~~~e~~~~iferal~~~--p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 26 MSKDYRSLESLFGRCLKKS--Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp HTTCHHHHHHHHHHHSTTC--C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCCCHHHHHHHHHHHhccC--C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 4589999999999998853 3 4434444444443333 2344555565432 3467888888877543 4
Q ss_pred CChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (623)
++.+.+..+|++.+.. ++. ...|......- +..+...+.++..+.. +.+..|..
T Consensus 103 ~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~---------------------~~y~~ar~ 158 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQT--PMGSLSELWKDFENFE-LELNKITGKKIVGDTL---------------------PIFQSSFQ 158 (493)
T ss_dssp HHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------HHHHHHHH
Confidence 5788899999999873 322 12222222111 1111112222221111 11222222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcc--C-----CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006981 184 AYGIMRSKNVKPDRVVFNALITACGQS--G-----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (623)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~--g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 256 (623)
+++.+...--..+...|...+.--... | ..+.+..+|+++... .+.+...|...+..+.+.|+++.|..+
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 222222100001223343333322111 0 023345566665542 223344555555556666666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 006981 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------GVIP---DEVFLSALIDFAGHAGKVEAAF 324 (623)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------~~~p---~~~~~~~li~~~~~~g~~~~a~ 324 (623)
|++.... +.+...|... ......++. ++.+.+. +..+ ....|...+....+.+..+.|.
T Consensus 236 ~erAi~~--P~~~~l~~~y----~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSLYY----GLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHH--CCSSHHHHHH----HHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhC--CCcHHHHHHH----HhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666665 3333333221 111111111 1111110 0011 1245666666666778899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHC
Q 006981 325 EILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (623)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (623)
.+|... +.. ..+..+|......-...+ +.+.|..+|+...+.- +.+...|...+....+.|+.+.|..+|+++.
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-- 381 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 999988 322 234445543333333333 6899999999887643 2345567777777788899999999999873
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 404 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
.....|...+.--...|+.+.+..+++++.+
T Consensus 382 ---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 ---KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2567788888777788999999998988764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.47 E-value=5.7e-06 Score=67.41 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
...|..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4455666666666666666666666666543 3445566666666666666666666666665543 3345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006981 172 CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (623)
|.+.|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00017 Score=69.83 Aligned_cols=174 Identities=6% Similarity=-0.066 Sum_probs=128.8
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-C-CHHH
Q 006981 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-G-AVDR 215 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~ 215 (623)
+.+..++|+++++.++... +-+..+|+.--..+...| .+++++..++.+.... +-+..+|+.-...+.+. + +.++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3345578999999999875 446778888888888888 5999999999999875 44677888776666665 6 7889
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---
Q 006981 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD--------RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--- 284 (623)
Q Consensus 216 A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 284 (623)
++++++.+.... +.|..+|+--.-.+.+.|.++ ++++.++++.+.+ +.|..+|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 144 EIEYIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 999999998642 456677766555555555555 8888888888877 6677888888877777775
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006981 285 ----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (623)
Q Consensus 285 ----~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (623)
++++++.+++.....+. |...|+-+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 67888888887776544 66677665555555554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.43 E-value=9.2e-06 Score=70.24 Aligned_cols=128 Identities=11% Similarity=0.042 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
..|..+...+...|++++|...++...+.. +.+..++..+...+...|++++|.+.+++..+.. +.+..+|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566666777777777777777776654 4456666677777777777777777777766653 33556666666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHH
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNA--LITACGQSGAVDRAFDVLAEM 223 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m 223 (623)
.+.|++++|...|++..+.. +.+...+.. +...+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777666542 223333322 223355556666666665544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.4e-05 Score=71.01 Aligned_cols=124 Identities=12% Similarity=-0.018 Sum_probs=59.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006981 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (623)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (623)
+...+...|++++|...|.+.. .|+...+..+...|.+.|++++|...|++..+.+ +.+..+|..+...|...
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 3344444555555555554432 2344445555555555555555555555554443 33444555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 283 GDWEFACSVYDDMTKKGVI--------------P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 283 g~~~~A~~l~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (623)
|++++|...|++..+.... | ....+..+..++.+.|++++|...++...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555555443211 0 1134444444555555555555555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=9.2e-07 Score=84.61 Aligned_cols=99 Identities=8% Similarity=-0.087 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...+..+...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666677777777777777777777653 3466677777777777777777777777776653 335666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777766543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=3.3e-05 Score=74.20 Aligned_cols=92 Identities=4% Similarity=-0.025 Sum_probs=38.2
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CC----HHHHHH
Q 006981 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI----TIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTI 274 (623)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 274 (623)
+..+...|++++|.+++++..... ...|+.. .+..+...+...+++++|...|+++.+.... ++ ..+++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 344455555555555555544321 1112211 1122333333444455555555544442111 11 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006981 275 AINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 275 li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+...|...|++++|...|++..
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555554443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.3e-06 Score=66.83 Aligned_cols=98 Identities=10% Similarity=-0.023 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
...+......+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.|++.++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456666667777777777777777776654 4556677777777777777777777777776653 3456667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006981 172 CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (623)
|...|++++|++.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 77777777777777776654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4.8e-05 Score=73.10 Aligned_cols=61 Identities=7% Similarity=-0.124 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 006981 376 TMNALITALCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKDD-VEVGLMLLSQAK 436 (623)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~-~~~a~~~~~~~~ 436 (623)
+|..+...|.+.|++++|++.+++..+ .+..+. ..+|..+..++.+.|+ +++|.+.+++..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 445555555556666666555555432 111121 4455555566666663 466666665554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.7e-05 Score=71.94 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=119.3
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHCCCCCC---------------
Q 006981 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTL-------ITTCAKSGKVDAMFEVFHEMVNAGIEPN--------------- 161 (623)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------- 161 (623)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5678888888888888765 4456677766 4555555555555554444333 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-
Q 006981 162 -------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD- 233 (623)
Q Consensus 162 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~- 233 (623)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|...... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C-Cccc
Confidence 2234455666777888888888887776643 44335555556777788888888888755431 0 111
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 234 -HITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (623)
Q Consensus 234 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 299 (623)
...+..+..++.+.|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2255666777778888888888888776543213 23456666777777788888888888777653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-05 Score=68.27 Aligned_cols=93 Identities=12% Similarity=-0.036 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006981 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (623)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (623)
..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|...+++..+.... +...+..+...+...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHh
Confidence 334444444455555555554444433 233444444444444555555555555444443211 333444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 006981 318 GKVEAAFEILQEAKN 332 (623)
Q Consensus 318 g~~~~a~~~~~~~~~ 332 (623)
|++++|...+.+..+
T Consensus 95 ~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 95 GKFRAALRDYETVVK 109 (166)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.9e-06 Score=71.45 Aligned_cols=99 Identities=7% Similarity=-0.036 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...+..+...+.+.|++++|+..|+...+.. |.+...|..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44566777777778888888888888887765 5567777778888888888888888888877764 335667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+|.+.|++++|+..|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-05 Score=63.71 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=22.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
.+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|...|+++.
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333444444444444444433332 2233333344444444444444444444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00023 Score=68.60 Aligned_cols=184 Identities=8% Similarity=0.030 Sum_probs=113.7
Q ss_pred hcCCHH-HHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHH----------HHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 006981 37 RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (623)
Q Consensus 37 ~~g~~~-~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~ 102 (623)
+.|.+. +|+++++.+...+ |.+..+...-..+....+. +++++.+++.+. +.+..+|+.-.-++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 566554 7888888888877 4444433322233322222 567777776653 55777777777666
Q ss_pred HcCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 006981 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---- 175 (623)
Q Consensus 103 ~~~~--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 175 (623)
...+ .+++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.++.+++.. +.|..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 6666 3678888888887765 5566677766666667776 477778877777765 44677777666655554
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHhh
Q 006981 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-----------GAVDRAFDVLAEMNA 225 (623)
Q Consensus 176 ----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~ 225 (623)
+.++++++.+.+..... +-|...|+-+-..+.+. +.++++++.+.++..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 34566777776666543 34556665444444333 234555555555554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.34 E-value=8.6e-05 Score=71.27 Aligned_cols=167 Identities=8% Similarity=-0.037 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-CCC--
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPD-- 233 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~-- 233 (623)
..+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+.+........ .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555667777888888888888777665321 11 123334455667778888888887766421111 111
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEVYTIAINCCSQTGDWEFACSVYDDMTKK----GVIP- 302 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p- 302 (623)
..+++.+...|...|++++|...|++..+. ..+.+ ..++..+...|.+.|++++|...+++..+. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 346777777788888888888888776521 01111 146677777777777777777777766532 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 006981 303 DEVFLSALIDFAGHAGKVEAA-FEILQEA 330 (623)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 330 (623)
-..++..+...|.+.|+.++| ...+++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 134566666666677777776 5555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-05 Score=66.10 Aligned_cols=117 Identities=10% Similarity=0.032 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555566666666666666666665543 3345556666666666666666666666655542 2345555556666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 006981 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 211 (623)
+.+.|++++|...|++..+.. +.+...+..+..++.+.|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 666666666666666655442 223444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.8e-06 Score=66.96 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...|..+...+...|++++|...++...+.. +.+..++..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44556666666667777777777777666543 3355666666666666677777777666666543 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (623)
.+.+.|++++|...|++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666666666554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.8e-05 Score=73.04 Aligned_cols=167 Identities=10% Similarity=0.011 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-----VFLSALIDFAGHAGKVEAAFEILQEAKNQGI---SVG--II 340 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 340 (623)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+.+..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566677777777777777766654322111 1233344556667788888888887765321 111 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHcCCChhhHHHHHHHHHHC----CCCC-CH
Q 006981 341 SYSSLMGACSNAKNWQKALELYEHMKS---I-KLKP--TVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NT 409 (623)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~ 409 (623)
+++.+...|...|++++|...|++..+ . +..+ ...+|..+...|.+.|++++|++.+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 778888888888888888888887762 1 1111 1257778888899999999999998887642 1111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 006981 410 ITYSILLVACERKDDVEVG-LMLLSQAKE 437 (623)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a-~~~~~~~~~ 437 (623)
.+|..+..++.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778888889999999999 777776653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.5e-05 Score=64.18 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=38.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (623)
.....|.+.|++++|+..|++..+.+ +.+..+|..+..+|.+.|++++|+..|++.++.+.. +...|..+..++...|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCC
Confidence 33344444444444444444444433 333444444444444444444444444444433221 2333444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 006981 319 KVEAAFEILQEAKN 332 (623)
Q Consensus 319 ~~~~a~~~~~~~~~ 332 (623)
++++|.+.|++..+
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-05 Score=70.48 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=88.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCh--hh
Q 006981 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQL--PK 392 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 392 (623)
..|++++|...+....+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4567777777777776654 3466778888888888888888888888877653 2366777777777 7788888 89
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006981 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (623)
Q Consensus 393 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (623)
|...|+++.+.. +-+...+..+...+...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999998888752 235677778888888999999999999888874
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.5e-05 Score=64.47 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 313 (623)
...+..+...+.+.|++++|...|++..+.. +.+..++..+...|...|++++|.+.+++..+.... +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4455555556666666666666666655543 334555666666666666666666666665554322 44455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006981 314 AGHAGKVEAAFEILQEAKNQ 333 (623)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~ 333 (623)
+.+.|++++|...+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55556666666555555543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.1e-06 Score=80.89 Aligned_cols=96 Identities=14% Similarity=-0.075 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (623)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 314 (623)
..+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344445555555555555555555555543 334555555555555555555555555555544322 344455555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 006981 315 GHAGKVEAAFEILQEAKN 332 (623)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~ 332 (623)
...|++++|...+....+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.4e-06 Score=74.58 Aligned_cols=97 Identities=19% Similarity=0.077 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC--
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-- 160 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-- 160 (623)
..+++.+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..+. +-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344445555555555555555555554431 111 11234444555555555555555555544331 1000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 161 NVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
...++..+...+...|++++|...+++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1223444444555555555555555444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.4e-06 Score=72.00 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG-CAKAGQV--AKA 181 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~~A 181 (623)
.|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 345555555555555443 3344555555555555555555555555555432 2244445555555 4455555 555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
...|++..+.. +.+...+..+...+...|++++|...|.+...
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555442 22344455555555555555555555555554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-05 Score=72.25 Aligned_cols=24 Identities=8% Similarity=-0.062 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 413 SILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
..+...+...|++++|.+.+++..
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344444555555555555554444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.1e-05 Score=72.45 Aligned_cols=188 Identities=11% Similarity=0.025 Sum_probs=119.0
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--------------
Q 006981 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGAL-------IDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------------- 197 (623)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------------- 197 (623)
..++...|.+.|.+..+.. +-....|+.+ ...+.+.++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5799999999999999874 3457788877 4555555556666655555443 22221
Q ss_pred --------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--
Q 006981 198 --------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-- 267 (623)
Q Consensus 198 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-- 267 (623)
.....+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...... .|
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 12234556677778888888888776542 3444355555667777888888888887443321 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
....+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 023566677777777777777777777764332243 2234445556666777777777777776653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.9e-05 Score=63.70 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=21.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
+...+...|++++|...|+...+.. +.+..++..+...+...|++++|.+.+.+..
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 73 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAI 73 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 3333333444444444444333332 2233333333333344444444444443333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.23 E-value=7.3e-06 Score=69.78 Aligned_cols=97 Identities=12% Similarity=-0.052 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
...+..+...+.+.|++++|...|++..... +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3355556666666667777777666666653 3356666666666666666666666666666543 2345556666666
Q ss_pred HHccCCHHHHHHHHHHHhh
Q 006981 207 CGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~ 225 (623)
|.+.|++++|...|++...
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=6.8e-05 Score=60.07 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
+..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445556666666677777777776666553 3455666666666666677777776666666543 2345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006981 172 CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (623)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=7.1e-06 Score=69.76 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...+..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|.+.|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34455556666666777777777777666654 4456666666666667777777777777666553 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666777777777766666543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.2e-05 Score=62.68 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
...|..+...+.+.|++++|+..|+...+.. +.+...|..+..++.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456666667777777777777777777654 4456677777777777777777777777777653 3356667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006981 172 CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (623)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777766654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=68.59 Aligned_cols=98 Identities=14% Similarity=0.037 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006981 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (623)
+...+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|+..|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34456667777778888888888888777654 4467777777777888888888888888777653 335566777777
Q ss_pred HHHccCCHHHHHHHHHHHhh
Q 006981 206 ACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~ 225 (623)
++...|++++|.+.|+....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77788888888887777665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.17 E-value=3.4e-05 Score=75.73 Aligned_cols=87 Identities=7% Similarity=-0.141 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~ 242 (623)
.+|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHH
Confidence 444445555555555555555555554432 2234444455555555555555555555544321 223344444445
Q ss_pred HHHHcCChHHH
Q 006981 243 ACANAGQVDRA 253 (623)
Q Consensus 243 ~~~~~g~~~~A 253 (623)
++.+.|+.++|
T Consensus 273 ~~~~~~~~~~a 283 (336)
T 1p5q_A 273 CQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.9e-05 Score=61.72 Aligned_cols=99 Identities=9% Similarity=0.065 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGAL 168 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l 168 (623)
+...|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44556666666677777777777777766654 3455666666666667777777777776666653 22 45666666
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 006981 169 IDGCAKA-GQVAKAFGAYGIMRSK 191 (623)
Q Consensus 169 i~~~~~~-g~~~~A~~~~~~m~~~ 191 (623)
...+.+. |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666676666666654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.1e-05 Score=75.16 Aligned_cols=132 Identities=11% Similarity=-0.014 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 006981 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--------------RVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (623)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (623)
+...+..+...|.+.|++++|+..|++......... ...|..+..++.+.|++++|...+++....
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666777777777777777777665421111 356677777777777777777777777653
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 006981 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA-CSVYDDMT 296 (623)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~l~~~m~ 296 (623)
. +.+...+..+..+|...|++++|...|+++.+.. +.+..++..+...+.+.|+.++| ..++..|.
T Consensus 226 ~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 3345666777777777777777777777777665 45566777777777777777666 33444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=1e-05 Score=72.63 Aligned_cols=140 Identities=9% Similarity=-0.070 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHH
Q 006981 74 QKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----------------KLYTTLI 134 (623)
Q Consensus 74 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----------------~~~~~li 134 (623)
.|++++|.+.|+.... .....+..+...+...|++++|+..|++..+.. +.+. .++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHH
Confidence 4556666666654331 234456667777888888888888888887643 1121 4555666
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 006981 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (623)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 214 (623)
.+|.+.|++++|+..+++..+.. +.+..++..+..+|...|++++|+..|++..+.. +-+...+..+..++...++.+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666543 3345566666666666666666666666665442 223444444444444444443
Q ss_pred HH
Q 006981 215 RA 216 (623)
Q Consensus 215 ~A 216 (623)
++
T Consensus 174 ~~ 175 (198)
T 2fbn_A 174 KK 175 (198)
T ss_dssp C-
T ss_pred HH
Confidence 33
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0051 Score=59.16 Aligned_cols=188 Identities=4% Similarity=-0.056 Sum_probs=107.9
Q ss_pred cCCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 104 SSKDSE-GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 104 ~~~~~~-~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
+.|.++ +|+.+++.+...+ |-+..+|+.--..+...+. +++++.+++.+.... +.+..+|+.-.-.+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344443 6777777777654 3334445443333333322 456677777766653 34666777666666
Q ss_pred HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc--
Q 006981 173 AKAG--QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA-- 247 (623)
Q Consensus 173 ~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~-- 247 (623)
.+.+ .+++++..++++.+.. +-|..+|+.-.-.+...|. .+++++.++.+.... +.|..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~---p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHHSC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhhh
Confidence 6666 3677777777777654 3456666665555566666 467777777766532 34555565555444443
Q ss_pred ------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhC
Q 006981 248 ------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-----------GDWEFACSVYDDMTKK 298 (623)
Q Consensus 248 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~ 298 (623)
+.++++.+.++.....+ |.|..+|+-+-..+.+. +.++++++.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 33566777777766665 55666666554444443 2345556666665554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00017 Score=57.71 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=4.7
Q ss_pred HcCChHHHHHHHH
Q 006981 246 NAGQVDRAREVYK 258 (623)
Q Consensus 246 ~~g~~~~A~~~~~ 258 (623)
..|++++|...|+
T Consensus 16 ~~~~~~~A~~~~~ 28 (118)
T 1elw_A 16 SVGNIDDALQCYS 28 (118)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcccHHHHHHHHH
Confidence 3333333333333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.2e-05 Score=62.36 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 166 (623)
.++..+...+.+.|++++|+..|++..+.. |.+..+|..+..+|.+.|++++|++.|++.++... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566677777777777777777777654 44566777777777777777777777777664310 111 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006981 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199 (623)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 199 (623)
.+...+...|++++|++.|++.... .||...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 6666666777777777777766553 344443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.08 E-value=4e-05 Score=64.45 Aligned_cols=98 Identities=9% Similarity=-0.010 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++..... +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3445555566667777777777777776654 4456666667777777777777777777766653 3345566666667
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006981 172 CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (623)
|...|++++|...|++..+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777766544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.07 E-value=9.7e-05 Score=61.35 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
.+...|..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...|++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 455566666666666666666666666666554 3445666666666666666666666666666543 33455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 006981 170 DGCAKAGQVAKAFGAYGIMRS 190 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~ 190 (623)
.+|...|++++|...|++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=8.6e-06 Score=73.16 Aligned_cols=123 Identities=11% Similarity=0.001 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-PD--------------RVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (623)
..+..+...+.+.|++++|+..|++....... |+ ...+..+..++.+.|++++|...+.+.....
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555555666666666666666666543110 00 1444455555555555555555555554421
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006981 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (623)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (623)
+.+...+..+..+|...|++++|...|++..+.. +.+..++..+...+...++.+++.
T Consensus 119 ---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 ---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred ---cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2234455555555555555555555555555543 334445555555544444444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.9e-05 Score=63.68 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTY 165 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~ 165 (623)
...|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456667777777778888888887777664 44666777777777777788777777777765421 111 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (623)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (623)
..+...|.+.|++++|.+.|++..+. .|+......+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 67777777777777777777777664 3454444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00011 Score=59.99 Aligned_cols=90 Identities=13% Similarity=0.071 Sum_probs=37.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (623)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (623)
+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhC
Confidence 3333444444444444444443322 1233444444444444444444444444444321 1123334444444444444
Q ss_pred HHHHHHHHHHHH
Q 006981 425 VEVGLMLLSQAK 436 (623)
Q Consensus 425 ~~~a~~~~~~~~ 436 (623)
+++|...|++..
T Consensus 88 ~~~A~~~~~~al 99 (126)
T 3upv_A 88 YASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.6e-05 Score=62.14 Aligned_cols=105 Identities=11% Similarity=0.180 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC--CCCC----HHHHHH
Q 006981 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYSI 414 (623)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~ 414 (623)
.+..+...+.+.|++++|+..|++..+.. +.+...|+.+..+|.+.|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666777777777777777766543 2356667777777777777777777777765421 1111 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006981 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448 (623)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 448 (623)
+..++...|++++|++.|++.++ ..|+..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 66777777888888888877766 345554433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.8e-05 Score=76.47 Aligned_cols=147 Identities=11% Similarity=-0.030 Sum_probs=76.4
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcC
Q 006981 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (623)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (623)
...+.-.+.+++.|++++|++.|.++.+........... ........+..+ .++..+...|...
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~--------------~al~~l~~~y~~~ 68 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG--ASVDDKRRNEQE--------------TSILELGQLYVTM 68 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS--SSBCSHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH--HHHHHHHhhhHH--------------HHHHHHHHHHHHC
Confidence 345556788899999999999999998865321111000 000001111112 2345667778888
Q ss_pred CChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhc
Q 006981 106 KDSEGAFQVLRLVQEAG-LKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVN----AGIEPN-VHTYGALIDGCAKA 175 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g-~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~ 175 (623)
|++++|.+.+..+.+.- ..++.. +.+.+-..+...|+.+.|.+++..... .+..+. ..++..|...|...
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 88888888777665421 011111 222222233344566666666655442 111111 23445555555555
Q ss_pred CCHHHHHHHHHHH
Q 006981 176 GQVAKAFGAYGIM 188 (623)
Q Consensus 176 g~~~~A~~~~~~m 188 (623)
|++++|..++++.
T Consensus 149 g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 149 KQYKDSLALINDL 161 (434)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHH
Confidence 5555555555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00012 Score=63.23 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+...|..+...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777888888888888888888888765 4567788888888888888888888888888764 345778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006981 171 GCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+|.+.|++++|+..|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00025 Score=59.51 Aligned_cols=99 Identities=12% Similarity=-0.003 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 165 (623)
.+...+..+...+...|++++|...|+...+. .|+ ...+..+...|...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45667777778888888888888888888765 344 5677777777888888888888888777653 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 166 GALIDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
..+..+|...|++++|...|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777788888888888888877765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.98 E-value=7.4e-05 Score=59.23 Aligned_cols=97 Identities=11% Similarity=0.016 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP--DRVVFNALI 204 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li 204 (623)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3345555566666666666666666665543 2345556666666666666666666666665542 22 345555566
Q ss_pred HHHHcc-CCHHHHHHHHHHHhh
Q 006981 205 TACGQS-GAVDRAFDVLAEMNA 225 (623)
Q Consensus 205 ~~~~~~-g~~~~A~~~~~~m~~ 225 (623)
..+... |++++|.+.+.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 666666 666666666666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00033 Score=58.75 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (623)
.+..+...+...|++++|.+.|++..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~ 55 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQAL 55 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333333334444444444444333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=9.6e-05 Score=60.11 Aligned_cols=95 Identities=9% Similarity=-0.070 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (623)
+..+...+.+.|++++|+..|+...+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4445556666777777777777776654 4456666667777777777777777777766653 3355666667777777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 006981 175 AGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (623)
.|++++|+..|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00015 Score=60.85 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=42.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (623)
.+...+.+.|++++|...|+.+...+ +.+...|..+..+|.+.|++++|+..|++....... +...+..+..++...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 33444444555555555555544443 334444444555555555555555555544443221 2333444444444445
Q ss_pred CHHHHHHHHHHHHH
Q 006981 319 KVEAAFEILQEAKN 332 (623)
Q Consensus 319 ~~~~a~~~~~~~~~ 332 (623)
++++|...|+...+
T Consensus 101 ~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 101 DLDGAESGFYSARA 114 (142)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00027 Score=58.55 Aligned_cols=95 Identities=14% Similarity=-0.075 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 313 (623)
...+..+...+...|++++|...|+...+.+ +.+...|..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 3344444444444444444444444444433 333444444444444444444444444444443221 33344444444
Q ss_pred HHhcCCHHHHHHHHHHH
Q 006981 314 AGHAGKVEAAFEILQEA 330 (623)
Q Consensus 314 ~~~~g~~~~a~~~~~~~ 330 (623)
+...|++++|...+...
T Consensus 87 ~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 QLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 44444444444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00023 Score=61.38 Aligned_cols=95 Identities=14% Similarity=0.000 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 315 (623)
.+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|+..|++..+.... +...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44444445555555555555555555443 334455555555555555555555555555544322 3444555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006981 316 HAGKVEAAFEILQEAKN 332 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~ 332 (623)
..|++++|...|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00011 Score=60.06 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 006981 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPD----RVVFN 201 (623)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~ 201 (623)
..+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...|++...... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666667777777777777666543 33556666666666677777777776666654321 111 44555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhh
Q 006981 202 ALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
.+..++...|++++|.+.|.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 555566666666666666666554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00083 Score=68.26 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEV----FLSALIDFAGHAGKVEAAFEILQEAKNQ----GISV-GIIS 341 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~ 341 (623)
+..+...|.+.|++++|.+.+..+... +..++.. ..+.+-..+...|+.+.|..++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666666666666666666655431 1111111 1111222223346667777666655431 2111 2445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHHC--CCC-C-C--HH
Q 006981 342 YSSLMGACSNAKNWQKALELYEHMKSI----KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLC-P-N--TI 410 (623)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~-p-~--~~ 410 (623)
+..+...|...|++++|..++++.... +-.+ ...+|..++..|...|++++|..++++.... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777765431 1111 1346677777788888888888887776531 111 1 1 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
.+..+...+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455555666777888888777766643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00023 Score=57.80 Aligned_cols=85 Identities=11% Similarity=0.004 Sum_probs=33.3
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (623)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (623)
+.+.|++++|...|+...+.. +.+...|..+...+...|++++|+..|++..+.... +...+..+..++...|++++|
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 334444444444444444332 233334444444444444444444444444333221 223333333333344444444
Q ss_pred HHHHHHH
Q 006981 324 FEILQEA 330 (623)
Q Consensus 324 ~~~~~~~ 330 (623)
...+++.
T Consensus 105 ~~~~~~a 111 (121)
T 1hxi_A 105 LASLRAW 111 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00026 Score=73.03 Aligned_cols=120 Identities=12% Similarity=0.052 Sum_probs=84.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (623)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (623)
...+.+.|++++|++.+++..+.. +.+..+|..+..+|.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 334556788888888888887764 4457788888888888888888888888888764 34677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHH
Q 006981 179 AKAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLA 221 (623)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 221 (623)
++|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888877653 2233445445444 677788888888877
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00073 Score=55.17 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=54.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDG 171 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~ 171 (623)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|++..+.. +.+ ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 4445556666666666666666543 2222 355556666666666666666666666542 112 4455566666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006981 172 CAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (623)
+.+.|++++|...|+++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00026 Score=72.97 Aligned_cols=89 Identities=12% Similarity=0.003 Sum_probs=48.5
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006981 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (623)
.+.+.|++++|.+.+++..+.. +.+..++..+..+|.+.|++++|...+++..+.+ +.+..+|..+...|.+.|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3445556666666666555421 2234455555555556666666666665555543 34455555555555555555
Q ss_pred HHHHHHHHHHHhC
Q 006981 286 EFACSVYDDMTKK 298 (623)
Q Consensus 286 ~~A~~l~~~m~~~ 298 (623)
++|.+.|++..+.
T Consensus 91 ~eA~~~~~~al~~ 103 (477)
T 1wao_1 91 RAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00022 Score=60.77 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HH
Q 006981 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-AD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VH 163 (623)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~ 163 (623)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+..- .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666667777777766665542100 11 13455566666666666666666665543210 001 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
++..+...+...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455555555556555555555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00031 Score=59.77 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHC----CCCC-CHH
Q 006981 341 SYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTI 410 (623)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ 410 (623)
++..+...|...|++++|...+++..+... .++ ...+..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 445555556666666666666655442100 011 345566667777777777777777776532 1111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566677778888888888888887764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00067 Score=69.58 Aligned_cols=123 Identities=7% Similarity=-0.068 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 157 (623)
...|..+...+.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566666667777777777777777665421111 3444455555555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 006981 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (623)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 216 (623)
+.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2234445555555555555555555555554432 12233444444444444444433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00063 Score=58.41 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA-------GL----------KADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (623)
+..+......+.+.|++++|+..|....+. .- +.+..+|..+..+|.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777788888888888888877764 00 1123456666666667777777777776666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
+.. +.+...|..+..+|...|++++|...|++....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 653 335566666666677777777777777666654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0017 Score=52.87 Aligned_cols=60 Identities=7% Similarity=-0.116 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
+..+..++.+.|++++|...|+.+.+.. +.+ ..++..+...+.+.|++++|...|+++..
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 112 33344444444444444444444444444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00057 Score=67.81 Aligned_cols=137 Identities=9% Similarity=-0.061 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (623)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (623)
.|..+...+.+.|++++|+..|++..+.- ++. ......+++.+ .. +.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~-------~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK-------LQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG-------GH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH-------HH-HHHHHHHHHHHHHHH
Confidence 45666667777777777777777666410 000 00000000000 00 113344555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHH
Q 006981 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (623)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 253 (623)
+.|++++|+..+++..+.. +.+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+.+.++.+++
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555442 2234455555555555555555555555554421 12334444444455555544444
Q ss_pred H
Q 006981 254 R 254 (623)
Q Consensus 254 ~ 254 (623)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00011 Score=59.27 Aligned_cols=84 Identities=12% Similarity=-0.071 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (623)
|++++|+..|++..+.+ -+.+...+..+..+|...|++++|.+.|++..+.. +.+..++..+..++.+.|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44445555555544432 01123344444444555555555555555544432 2234444444444445555555555
Q ss_pred HHHHHHh
Q 006981 184 AYGIMRS 190 (623)
Q Consensus 184 ~~~~m~~ 190 (623)
.|++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0011 Score=67.96 Aligned_cols=85 Identities=9% Similarity=-0.047 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
|..+..+|.+.|++++|+..+.+..+.. +.+...+..+..+|.+.|++++|...|++..+.. +.+...+..+...+.+
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3333444444444444444444444332 2233444444444444444444444444444332 1122334444444444
Q ss_pred CCChhhH
Q 006981 387 GDQLPKT 393 (623)
Q Consensus 387 ~g~~~~A 393 (623)
.++.++|
T Consensus 398 ~~~~~~a 404 (457)
T 1kt0_A 398 AKEHNER 404 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00093 Score=66.27 Aligned_cols=120 Identities=11% Similarity=0.028 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYN---------------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 301 (623)
+..+...+.+.|++++|...|++..+.. -+.+..+|..+..+|.+.|++++|++.+++..+....
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 4445555666666666666666555410 0112344555555555555555555555555554322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (623)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (623)
+...+..+..+|...|++++|...|++..+.. +.+...+..+...+.+.++.+++
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554442 12334444444444444444333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00022 Score=57.43 Aligned_cols=61 Identities=11% Similarity=0.014 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
.+..+..+|.+.|++++|...|++..+.+ +.+..++..+..++.+.|++++|+..|++...
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444433 33344444444444444444444444444433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00089 Score=57.44 Aligned_cols=63 Identities=10% Similarity=-0.100 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|++.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3445555555555555555555555555431 22344555555555556666666666655554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0086 Score=62.88 Aligned_cols=172 Identities=6% Similarity=-0.051 Sum_probs=115.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (623)
...++|++.++.+.+.+ +-+..+|+.--.++.+.|+ ++++++.++.+.+.. +-+..+|+.-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34467788888887765 4456667666666666666 788888888887765 44677787777777777
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc-----
Q 006981 176 G--QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA----- 247 (623)
Q Consensus 176 g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~----- 247 (623)
+ +++++++.++++.+.. +-+..+|+.-...+.+.| ..+++++.++++.+.. +.|..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~---p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---CCCccHHHHHHHHHHhhccccc
Confidence 7 6688888888887764 446777777766677777 7788888877776542 34566666666555553
Q ss_pred ---------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006981 248 ---------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (623)
Q Consensus 248 ---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (623)
+.++++.+.++.....+ +.+..+|+-+-..+.+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566666666666655 4556666666665555555
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0005 Score=67.37 Aligned_cols=147 Identities=17% Similarity=0.082 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
..+..+...+.+.|++++|+..|+...+. .|+... +...++.+++...+ . ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 34666667777788888888888887764 233221 11122222222111 0 12566666667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHH-HHHcCCh
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKA-CANAGQV 250 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~-~~~~g~~ 250 (623)
.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|.+.... .|+ ...+..+... ....+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l----~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY----APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHH
Confidence 77777777777777666542 335566666777777777777777777766542 232 2333334333 2234455
Q ss_pred HHHHHHHHHHHhc
Q 006981 251 DRAREVYKMIHKY 263 (623)
Q Consensus 251 ~~A~~~~~~~~~~ 263 (623)
+.+...|..+...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 6666666666544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0054 Score=64.45 Aligned_cols=133 Identities=8% Similarity=0.014 Sum_probs=64.5
Q ss_pred hcC-CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHH----------HHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 006981 37 RQG-RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (623)
Q Consensus 37 ~~g-~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~ 102 (623)
+.| .-++|++.++++.+.+ |........-..+....|+ +++|+.+++.+. +.+..+|+.-.-++
T Consensus 40 ~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 444 4467788888888877 4444443333333333333 455555554432 33444555544444
Q ss_pred HcCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006981 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (623)
Q Consensus 103 ~~~~--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (623)
.+.+ +++++++.++.+.+.. +-+..+|+.-..++.+.| .++++++.++++++.. +.|..+|+.....+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 189 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHH
Confidence 4555 3355555555555443 334444444444444444 4445555555544433 224444444444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0025 Score=53.64 Aligned_cols=95 Identities=11% Similarity=-0.042 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CC
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKA------DC-----KLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI 158 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~ 158 (623)
+......+.+.|++++|+..|++..+..... +. ..|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4445555666777777777777776643210 12 25566666666666666666666665543 00
Q ss_pred CC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 159 EP-NVHTY----GALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 159 ~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
.| +...| .....++...|++++|+..|++..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 12 23344 555555555555555555555554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00023 Score=56.39 Aligned_cols=92 Identities=9% Similarity=-0.055 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-------HH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-------VH 163 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-------~~ 163 (623)
+...|..+...+...|++++|+..|+...+.. +.+...+..+..++.+.|++++|.+.|++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34456666667777777777777777776654 445666777777777777777777777777655 233 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 006981 164 TYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~ 185 (623)
.+..+..++...|+.+.|...|
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 4444555555555544444333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0068 Score=50.26 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=6.6
Q ss_pred cCCHHHHHHHHHHHHh
Q 006981 175 AGQVAKAFGAYGIMRS 190 (623)
Q Consensus 175 ~g~~~~A~~~~~~m~~ 190 (623)
.+++++|+..|++..+
T Consensus 74 ~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 74 KKDLRKAAQYYSKACG 89 (138)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHc
Confidence 3344444444444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0028 Score=52.62 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=6.6
Q ss_pred cCCHHHHHHHHHHHHh
Q 006981 352 AKNWQKALELYEHMKS 367 (623)
Q Consensus 352 ~g~~~~A~~~~~~m~~ 367 (623)
.+++++|.+.|++..+
T Consensus 74 ~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 74 KKDLRKAAQYYSKACG 89 (138)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHc
Confidence 3344444444444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0042 Score=52.31 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKY-------NIKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
.|+.+..++.+.|++++|+..+++..+. + +.+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666677777777777777666664 3 3344566 6677777777777777777776654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00088 Score=65.60 Aligned_cols=149 Identities=13% Similarity=0.043 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006981 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (623)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (623)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34666777788889999999999887764 344321 223334444433221 13788889999
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHH
Q 006981 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC-CSQTGDWE 286 (623)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~ 286 (623)
.+.|++++|...+.+..... +.+...+..+..+|...|++++|...|+++.+.. +.+..++..+... ....+..+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988642 3467789999999999999999999999998765 4455666666655 34456778
Q ss_pred HHHHHHHHHHhCC
Q 006981 287 FACSVYDDMTKKG 299 (623)
Q Consensus 287 ~A~~l~~~m~~~~ 299 (623)
.+..+|..|....
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 8889999887653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0033 Score=47.29 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (623)
..|..+...+...|++++|+..++...+.. +.+..++..+...+.+.|++++|.+.|++..+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555555443 3344455555555555555555555555555432 22334444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0032 Score=50.14 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
|+..++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444432 3345555555555555555555555555555442 2234455555555555555555555555554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0027 Score=65.16 Aligned_cols=88 Identities=9% Similarity=-0.033 Sum_probs=39.2
Q ss_pred HhcCCHHHHHHHHHHHHhC---CC---CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCCCCCC-HHHHHHH
Q 006981 173 AKAGQVAKAFGAYGIMRSK---NV---KP-DRVVFNALITACGQSGAVDRAFDVLAEMNAE----VHPVDPD-HITIGAL 240 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~---g~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~-~~~~~~l 240 (623)
...|++++|+.++++..+. -+ .| ...+++.|...|...|++++|..++.+.... -..-.|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456666666655554321 01 11 1234555555555555555555555443320 0001122 2334445
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 006981 241 MKACANAGQVDRAREVYKMI 260 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~ 260 (623)
...|...|++++|+.++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0023 Score=65.56 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=39.2
Q ss_pred HHcCChHHHHHHHHHHHhcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHH
Q 006981 245 ANAGQVDRAREVYKMIHKYN---IKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGV-IPD-EVFLSAL 310 (623)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~-~p~-~~~~~~l 310 (623)
...|++++|+.++++..+.. +.+ ...+++.|...|...|++++|+.++++.+. .|. .|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34555555555555443320 001 123455555555555555555555554432 111 111 1334444
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 006981 311 IDFAGHAGKVEAAFEILQEA 330 (623)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~ 330 (623)
...|...|++++|..++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 44555555555555554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0077 Score=45.15 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.+..+...+.+.|++++|...|++..+.. +.+..++..+...+.+.|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444555555555555555544433 333444455555555555555555555554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0061 Score=48.46 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
...+..+...|...|++++|...|++..+.+ +.+...|..+...|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444444433 2334444444444444444444444444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0034 Score=49.30 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.+++..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44445555555555555555555555543 334555555555555555555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0029 Score=53.15 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----------ChhHHHHHHHHHHHC
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-----------KVDAMFEVFHEMVNA 156 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~ 156 (623)
++|+..|++..+.. +.+..+|..+..+|.+.| ++++|++.|++..+.
T Consensus 63 ~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 63 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 35555555555543 334445555555555443 455555555555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0033 Score=52.84 Aligned_cols=96 Identities=9% Similarity=-0.005 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (623)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (623)
.+++|.+.++...+.. +.+...|+.+..++...++ +++|+..|++.++.. +.+..+|..+..+|...|
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 4455555555555543 3445555555555555444 568999999988874 346778888888888764
Q ss_pred -----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 177 -----------QVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (623)
Q Consensus 177 -----------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (623)
++++|++.|++..+. .|+...|...+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 788888888888775 5666655544443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0094 Score=46.04 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (623)
+...|..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555443 2234445555555555555555555555444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.078 Score=51.26 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006981 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (623)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (623)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5677788887777777889999999998888874 77777777788888889999999988888776 55666654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.012 Score=45.38 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
...+..+...|.+.|++++|...|+++.+.+ +.+..+|..+..+|.+.|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555556666666666666555544 3344555555666666666666666555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.056 Score=59.71 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=53.5
Q ss_pred hHHHHHHHH-HhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006981 74 QKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152 (623)
Q Consensus 74 ~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 152 (623)
.+++++|.+ ++..++. ......+++.+.+.|..+.|+++.+.-. .-...+...|++++|.++.+.
T Consensus 612 ~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 612 RGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp TTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTT
T ss_pred hCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHh
Confidence 345555555 4433331 1122555556666666666665542111 112334566777777766543
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (623)
Q Consensus 153 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (623)
+ .+...|..|...+.+.++++.|.+.|.++.
T Consensus 678 ~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 678 E------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp C------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred h------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 2 356677777777777777777777777654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.27 Score=54.10 Aligned_cols=155 Identities=14% Similarity=0.062 Sum_probs=98.3
Q ss_pred HHHHcCCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 100 SVCASSKDSEGAFQ-VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (623)
Q Consensus 100 ~~~~~~~~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (623)
......+++++|.+ ++.. ++ +......++..+.+.|..++|.++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445778888876 4421 11 12233677788888888888887653211 112345678899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006981 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (623)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (623)
+.|+++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. +..+...|...|+.+...++-+
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHH
Confidence 9888876543 3678888899999999999999999887642 3445555666777776666655
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (623)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 295 (623)
.....| -++.....|.+.|++++|++++.++
T Consensus 732 ~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 732 DAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 555544 2334444555666666666665543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.13 Score=49.65 Aligned_cols=135 Identities=7% Similarity=-0.056 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHc--CC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cC-Ch-hHH---HHHHHHHH
Q 006981 88 PNPTLSTFNMLMSVCAS--SK---DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SG-KV-DAM---FEVFHEMV 154 (623)
Q Consensus 88 ~~~~~~~~~~li~~~~~--~~---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g-~~-~~A---~~~~~~m~ 154 (623)
++.+...|...+++... .+ +..+|..+|++..+.. |-....|..+.-+|.- .+ .. ... ...+....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 44566777777765332 22 3467788888877763 2234445444444331 00 00 000 01111111
Q ss_pred H-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 155 N-AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 155 ~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
. ...+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|+.++|.+.|.+...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0 0113344555555444444556666666555555543 4544444445555555555555555555543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.16 Score=42.15 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 006981 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVG 428 (623)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a 428 (623)
.+..+.+-|.+..+.+. ++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34566667776666553 68888888888888888 5668999999988764 35 244455566678999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 429 LMLLSQAKEDGVIPNLVMFKCIIGM 453 (623)
Q Consensus 429 ~~~~~~~~~~g~~p~~~~~~~li~~ 453 (623)
++.++.+++ ++|+..-...|...
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHHHHH
Confidence 999999988 67876665555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.032 Score=42.59 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=23.3
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006981 102 CASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVN 155 (623)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (623)
+.+.|++++|+..++...+.. +.+.. .+..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444432 22333 444444444444444444444444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.082 Score=53.11 Aligned_cols=61 Identities=8% Similarity=-0.089 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-VKPD-RVVFNALITACGQSGAVDRAFDVLAEM 223 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (623)
.+++.|...|...|++++|..++++.... | -.|+ ..+++.|...|...|++++|..++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34555555555555555555555544321 1 1122 234555555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.13 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMI 260 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (623)
+++.|..+|...|++++|+.+++++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~ 355 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRT 355 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444444455555555555544443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.035 Score=55.82 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 341 SYSSLMGACSNAKNWQKALELYEHM 365 (623)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m 365 (623)
+++.|..+|...|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 4444455555555555555544443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.1 Score=39.60 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=30.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 242 KACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
..+.+.|++++|...|+.+.+.. +.+.. .|..+...|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445555555555555555543 33444 5555555555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.074 Score=53.51 Aligned_cols=62 Identities=8% Similarity=-0.063 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 375 STMNALITALCDGDQLPKTMEVLSDMKS-----LG-LCPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (623)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (623)
.+++.+...|...|++++|+.++++.+. .| -.|+ ..+++.|...|...|++++|..++++..
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455555555555555555555555432 11 1121 3345555566666666666666666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=1.2 Score=37.79 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=48.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHH
Q 006981 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (623)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (623)
.+.|+++.|.++.+++. +...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.
T Consensus 16 L~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHHH
T ss_pred HhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHHH
Confidence 34555555555554441 345555555555555555555555554321 2333333444555554
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (623)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 293 (623)
-.++-+.....| -++.....+...|+++++.++|.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444333 23334444445556665555553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=1.6 Score=40.53 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C
Q 006981 213 VDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANA-----GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-G 283 (623)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 283 (623)
...|...+++..+ +.|+ -..|..+...|.+. |+.++|.+.|++..+.+...+..++......++.. |
T Consensus 179 l~~A~a~lerAle----LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD----LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH----HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH----hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 4567777777765 3565 55778888888884 89999999999988876333477888888888884 8
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHHHH
Q 006981 284 DWEFACSVYDDMTKKGVI--PDEVFLS 308 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~--p~~~~~~ 308 (623)
+.+++.+.+++.+..... |+....+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 899999999988887665 6644443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.16 Score=38.42 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 126 DCKLYTTLITTCAKSGK---VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 126 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
|+..+..+..++...++ .++|..++++..+.. +-+..+...+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433322 345555555554442 223444444445555555555555555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.23 Score=37.41 Aligned_cols=66 Identities=5% Similarity=-0.007 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 90 PTLSTFNMLMSVCASSKD---SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
.|...+..+..++...++ .++|..++++..+.. +-++.....+...+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445555555555543333 466666666666654 444555666666666666666666666666654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.27 Score=40.75 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhhHH
Q 006981 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKTM 394 (623)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 394 (623)
+..+.+-|.+..+.+. ++..+...+..++++.+ +.+++..+|+...+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455555665555553 67777777777788777 5668888888777653 13 2445555666778888888888
Q ss_pred HHHHHHHHCCCCCCH
Q 006981 395 EVLSDMKSLGLCPNT 409 (623)
Q Consensus 395 ~l~~~m~~~g~~p~~ 409 (623)
+.++.+++ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 88888877 36743
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=3.5 Score=38.17 Aligned_cols=96 Identities=14% Similarity=0.002 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 006981 250 VDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-GKVEA 322 (623)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~ 322 (623)
...|...+++..+.+..- +...|+.+...|.+. |+.++|.+.|++.++.+..-+..++....+.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 456777777777764110 356788888888884 88888888888888764322356666677777774 88888
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHH
Q 006981 323 AFEILQEAKNQGIS--VGIISYSSL 345 (623)
Q Consensus 323 a~~~~~~~~~~~~~--~~~~~~~~l 345 (623)
+.+.+++....... |+....+.+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHH
Confidence 88888888887655 554444433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.84 E-value=2.1 Score=34.30 Aligned_cols=137 Identities=14% Similarity=0.047 Sum_probs=81.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (623)
Q Consensus 282 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (623)
.|..++..++..+..... +..-++.+|--....-+-+-..++++.+-+. .| ...+|++......
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHHH
Confidence 455566666666555432 3344555554444444444444444433221 12 1345666655555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (623)
Q Consensus 362 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (623)
+-.+- .+....+..+..+...|+-++-.+++.++... -+|+......+..||.+.|+..++.+++.++-+.|+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 55442 45556666777777788887777777775442 467777777778888888888888888887777774
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.79 E-value=2.8 Score=35.61 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 006981 163 HTYGALIDGCAKAGQVAKAFGAYG 186 (623)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~ 186 (623)
..|..|.....+.|+++-|.+.|.
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Confidence 334444444444444444444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.94 E-value=3 Score=33.43 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
...++.+...|+-+.-.+++.++.. +..|+......+..+|.+.|+..+|.+++.+.-+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3344444444555544444444322 123344444444555555555555555555544444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.93 E-value=1.1 Score=34.26 Aligned_cols=63 Identities=11% Similarity=-0.044 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYN------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.+..|...+.+.++++.|...|+...+.. -.+...++..+..+|.+.|+++.|...+++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455555666666666666665554421 1223455666666666666666666666666553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.70 E-value=1.1 Score=34.43 Aligned_cols=62 Identities=10% Similarity=-0.001 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAG------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
+..+...+.+.+++..|...++...+.- -.+....+..|..++.+.|+++.|...+++..+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4445555566666666666665554421 0123445555555555666666666655555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.64 E-value=2.3 Score=33.73 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=10.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006981 417 VACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~ 437 (623)
-++.+.|++++|++.++.+++
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 344555555555555555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.62 E-value=1.3 Score=36.17 Aligned_cols=64 Identities=11% Similarity=0.014 Sum_probs=47.5
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (623)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (623)
..++.++|.++|+.+++.+-+- ...|.....--.++|++..|++++.+.+..+..|....-.++
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 3478999999999987643222 666766666678899999999999999988776655444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.51 E-value=1.6 Score=35.67 Aligned_cols=106 Identities=10% Similarity=-0.013 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHHcCChhHHHHHHHHHH
Q 006981 88 PNPTLSTFNMLMSVCASSKDS------EGAFQVLRLVQEAGLKADCK----LYTTLIT---TCAKSGKVDAMFEVFHEMV 154 (623)
Q Consensus 88 ~~~~~~~~~~li~~~~~~~~~------~~A~~~~~~m~~~g~~~~~~----~~~~li~---~~~~~g~~~~A~~~~~~m~ 154 (623)
.+.|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|-.|-- .+...+++++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356777888888887777888 7777888877764 455421 1111111 1123477888888888886
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006981 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (623)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (623)
+.. +.=...|......-.+.|+...|.+++...+..+.+|
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 642 2236667777777777888888888888887766443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.32 E-value=1.4 Score=35.07 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=67.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 006981 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---ALELYEHMKSIKLKP--TVSTMNALITAL 384 (623)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~~li~~~ 384 (623)
++........+..+.+-+......|. ++..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 34444444556666777776666553 777888888888888887665 888888887653 12 233444566788
Q ss_pred HcCCChhhHHHHHHHHHHCCCCCCH
Q 006981 385 CDGDQLPKTMEVLSDMKSLGLCPNT 409 (623)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (623)
.+.|++++|.+.++.+++. .|+.
T Consensus 85 yklg~Y~~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQT--EPQN 107 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHhhhHHHHHHHHHHHHHh--CCCC
Confidence 9999999999999998884 6743
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.94 E-value=6.7 Score=39.33 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=30.0
Q ss_pred CCccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCchHHHHHHHHHHhhhHHHHHHHHHh
Q 006981 19 ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84 (623)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 84 (623)
.+|...+.........|.+ |++++|++.+-.+.+. +-.+++......+...|...++++...+.+
T Consensus 11 ~D~s~~~~~~~~~~~~l~~-~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i 79 (445)
T 4b4t_P 11 KDYSQILKEEFPKIDSLAQ-NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQL 79 (445)
T ss_dssp -----------------CH-HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3444445555555555544 7788888887766643 112455555566667777777666654444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.27 E-value=12 Score=42.91 Aligned_cols=87 Identities=9% Similarity=0.074 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (623)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (623)
.-|..++..+-+.+.++.+.++-...++..-+.+. ..|..+.+.+...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34566666666666666666665555443211111 2466667777777777777777766665432 34556666
Q ss_pred HHHHHccCCHHHH
Q 006981 204 ITACGQSGAVDRA 216 (623)
Q Consensus 204 i~~~~~~g~~~~A 216 (623)
+...+..|..+.-
T Consensus 978 V~~lce~~~~~~L 990 (1139)
T 4fhn_B 978 VNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHCCHHHH
T ss_pred HHHHHhCCChhhh
Confidence 6666666665543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.74 E-value=24 Score=35.26 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=49.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCC----HHH
Q 006981 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEV 271 (623)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~ 271 (623)
..|...+...|++.+|.+++..+..+..+.... ...+..-++.|...+++..|..++.++... ...++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 345566666677777777766665432222111 223444556666666766666666655321 11111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDM 295 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m 295 (623)
+..++..+...+++.+|.+.|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445555555566666665555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.62 E-value=42 Score=36.87 Aligned_cols=310 Identities=9% Similarity=0.022 Sum_probs=173.0
Q ss_pred HHHHHHHHcCCChHHH-HHH-HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 006981 96 NMLMSVCASSKDSEGA-FQV-LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDG 171 (623)
Q Consensus 96 ~~li~~~~~~~~~~~A-~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~ 171 (623)
.++.+++...|-.... +.. ..++-+. .+....-.+.--+....|+.++++.+++.....+ -.+....-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 3566788888754333 222 2344442 2223333334445678899999988888766421 12233444455556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHhhCCCCCCCCHHHHH--HH
Q 006981 172 CAKAGQVAKAFGAYGIMRSKNV-------KPDRVVFNALITACG--QSGAVDRAFDVLAEMNAEVHPVDPDHITIG--AL 240 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~-------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~--~l 240 (623)
...+|..+++..++.......- .+....-.++.-+.+ -.++ +++.+.+..+.... .+...... +|
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalAL 496 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND---SATSGEAAALGM 496 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 6667776678887776654310 011122222323333 3344 45556666655421 11111122 33
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHH
Q 006981 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC--CSQTGDWEFACSVYDDMTKKGVIPDEVFLS---ALIDFAG 315 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~---~li~~~~ 315 (623)
...+.-.|+.+....++..+.+.. +..+...+.-+ +...|+.+.+..+.+.+.... .|. .-|. ++.-+|+
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAya 571 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTT
T ss_pred hhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhc
Confidence 334556678888888888776542 23343334444 446788888888888887642 222 2232 3334677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hhHH
Q 006981 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTM 394 (623)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~ 394 (623)
..|+.....+++..+.... ..++.-...+.-++...|+.+.+.++++.+.+.+ .|.+..-.++.-+....|.. .+|+
T Consensus 572 GTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp TSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 7889877777888887653 2233333333334445677777788887776654 45555555566666666665 5788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 395 EVLSDMKSLGLCPNTITYSILLVACER 421 (623)
Q Consensus 395 ~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (623)
+++..+.. .+|..+-...+.++..
T Consensus 650 d~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 650 DVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp HHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 99999875 4565554444444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.50 E-value=42 Score=36.82 Aligned_cols=308 Identities=10% Similarity=-0.024 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHcCChhHH-HHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHH
Q 006981 129 LYTTLITTCAKSGKVDAM-FEVF-HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV--FNALI 204 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A-~~~~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li 204 (623)
+-.++.+++..+|--... +... +.+.+. .+....-.+.--+....|+.++++.+++.....+-..+..+ -..+.
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAlla 418 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYG 418 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHH
Confidence 445667788877744332 2222 233332 22222222333456778999999988887765221223333 33334
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCC-----CCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCCH--HHHHHHH
Q 006981 205 TACGQSGAVDRAFDVLAEMNAEVHPVD-----PDHITIGALMKACANAGQ-VDRAREVYKMIHKYNIKGTP--EVYTIAI 276 (623)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~--~~~~~li 276 (623)
-+....|..+++..++........... +....-.++.-+.+-.|. -+++...+..+...+- +.. ..--+|.
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALG 497 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMG 497 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHh
Confidence 455566666678887776654311010 112222333333333443 2455555555554321 111 1112333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhc
Q 006981 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG--HAGKVEAAFEILQEAKNQGISVGIISY--SSLMGACSNA 352 (623)
Q Consensus 277 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~ 352 (623)
..+.-.|+.+....++..+.+.. +......+..+++ ..|+.+.+..+.+.+.... .|....- .++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCC
Confidence 44556788888888888776642 3344444444444 6789898888888887642 2222222 2345567888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 006981 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLML 431 (623)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~ 431 (623)
|+.....+++..+.+.. ..++.....+.-++...|+.+.+.++++.+.+.+ .|...--..+.-+....|.. .++..+
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 99887777999887642 2233333334445556788888888887776643 44444333333344444443 567778
Q ss_pred HHHHHHCCCCCCHHHHH
Q 006981 432 LSQAKEDGVIPNLVMFK 448 (623)
Q Consensus 432 ~~~~~~~g~~p~~~~~~ 448 (623)
+..+.. ++|..+-.
T Consensus 652 L~~L~~---D~d~~Vrq 665 (963)
T 4ady_A 652 LDPLTK---DPVDFVRQ 665 (963)
T ss_dssp HHHHHT---CSSHHHHH
T ss_pred HHHHcc---CCCHHHHH
Confidence 877764 45555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.30 E-value=4.5 Score=30.37 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=51.3
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (623)
+.-+..+-++.+....+.|++....+.+.||.+..++..|.++|+-++.. ..+...+|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 34467777777778889999999999999999999999999999988743 223355788887653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.87 E-value=3 Score=41.01 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHH---HcCCChHHHHHHHHHHHHc--CCC-CCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHCCCCCCHH
Q 006981 91 TLSTFNMLMSVC---ASSKDSEGAFQVLRLVQEA--GLK-ADCKLYTTLITTCAKSGKVDA-MFEVFHEMVNAGIEPNVH 163 (623)
Q Consensus 91 ~~~~~~~li~~~---~~~~~~~~A~~~~~~m~~~--g~~-~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~~~~~ 163 (623)
|...|..++... ...|+.+.|...++.+... |-. ++.. ...+-. ...-++++. ..
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~-------~~ 172 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK-------VL 172 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH-------HH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH-------HH
Confidence 555566665443 3468888888888887753 211 1110 001100 011111111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006981 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (623)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (623)
+...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|++.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23334445555555555555555554432 334455555555555555555555555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.79 E-value=3.4 Score=40.69 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 006981 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFN 201 (623)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 201 (623)
+...++..+...|+.+++...+..+.... +-+...|..+|.++.+.|+..+|++.|+.... .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34456677778888888887777776653 45777888888888888888888888877643 37888776643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.05 E-value=9.7 Score=40.76 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=39.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
.|...|+++.|+.+-++....- +.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556778888888877776653 4457788888888888888888888777764
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.44 E-value=8.5 Score=28.79 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 356677777777666542 22222223344567777887777766554 677777777654 4667777777777
Q ss_pred HHHHhCCCCCCHHHH
Q 006981 186 GIMRSKNVKPDRVVF 200 (623)
Q Consensus 186 ~~m~~~g~~p~~~~~ 200 (623)
.++..+| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6776665 3444444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.16 E-value=26 Score=40.00 Aligned_cols=84 Identities=13% Similarity=0.017 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (623)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (623)
|..++..+-+.+.++.+.+.-....+....-+. ..|..+...+...|++++|...+-.+..... -......|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 555666666666666666655544432111111 1455666666667777777666666655432 2445556666
Q ss_pred HHHhcCCHHH
Q 006981 348 ACSNAKNWQK 357 (623)
Q Consensus 348 ~~~~~g~~~~ 357 (623)
..+..|..+.
T Consensus 980 ~lce~~~~~~ 989 (1139)
T 4fhn_B 980 QLTKQGKINQ 989 (1139)
T ss_dssp HHHHHCCHHH
T ss_pred HHHhCCChhh
Confidence 6665555443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.77 E-value=8 Score=28.86 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=51.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (623)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (623)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 356677777776666542 22222223344566777777777665554 677777777654 4677777777777
Q ss_pred HHHHhCCCCCCHHHH
Q 006981 186 GIMRSKNVKPDRVVF 200 (623)
Q Consensus 186 ~~m~~~g~~p~~~~~ 200 (623)
.++..+| .|....|
T Consensus 92 ~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 92 AGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTCS-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6776665 3444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.03 E-value=19 Score=38.62 Aligned_cols=128 Identities=16% Similarity=0.096 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccCC-HHHHHHHHHHHhhCC----CCCCC-CHH-
Q 006981 166 GALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVV--FNALITACGQSGA-VDRAFDVLAEMNAEV----HPVDP-DHI- 235 (623)
Q Consensus 166 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~-~~~A~~~~~~m~~~~----~~~~~-~~~- 235 (623)
..|+..+...++ .+.|..+|+++.+. .|...+ ...++..+.+.++ --+|.+++.+..+.. ....+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344444444555 57788899888876 333222 2233333333332 224444444432100 00111 110
Q ss_pred ---------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 236 ---------TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 236 ---------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
....=.+.+...|+++.|+.+-++....- +.+-.+|..|...|.+.|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11112344567889999999998887764 6667899999999999999999998888774
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=80.63 E-value=20 Score=28.59 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006981 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (623)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (623)
.|+..+--.+..++.+.... .+++.+++++.+.+ | ....+-.+.-++.+.|++++|++..+.+.+ ++|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 46666655666677766654 46788888877654 4 233444555678888999999988888887 567766
Q ss_pred HHHHHHHH
Q 006981 446 MFKCIIGM 453 (623)
Q Consensus 446 ~~~~li~~ 453 (623)
-...|-.+
T Consensus 113 QA~~Lk~~ 120 (134)
T 3o48_A 113 QVGALKSM 120 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 623 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.03 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.98 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.82 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.51 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.47 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.28 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.26 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.23 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.21 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.12 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.1 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.08 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.07 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.03 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.02 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.94 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.86 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.85 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.82 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.72 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.65 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.53 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.49 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.48 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.43 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.39 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.38 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.3 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.3 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.27 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.2 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.19 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.18 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.11 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.09 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.29 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.13 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.46 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.41 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.55 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.41 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.52 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.21 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.76 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.82 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.12 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.88 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.6e-20 Score=183.35 Aligned_cols=379 Identities=13% Similarity=0.047 Sum_probs=232.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCh
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (623)
.+...+.|++++|++.|+++.+.. |.+......++.++...|++++|...|+++. |.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 345567888888888888888776 5566666666666666677777777776543 34556666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
++|+..+....+.. +.+..............+....+........... .................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 77777777766654 3344444445555555555555555554444433 223334444455555666666666666665
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 006981 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (623)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 268 (623)
.... +-+...+..+...+...|+.++|...+.+..... +.+..++..+...+...|++++|...++.....+ +.+
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC---cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 5442 2344555666666666677777777766665431 2234456666666667777777777776666654 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (623)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (623)
...+..+...+.+.|++++|...|++..+.... +..++..+...+...|++++|.+.+....... +.+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 566666666666777777777777666655332 45556666666666677777766666665543 4455666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006981 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDD 424 (623)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 424 (623)
+.+.|++++|...|++..+.. +.+..+|..+...|.+.|++++|++.|++..+ +.| +..+|..+..++.+.||
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 666666666666666665543 22455566666666666666666666666665 345 34456666666555553
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=6e-19 Score=176.26 Aligned_cols=372 Identities=13% Similarity=0.078 Sum_probs=305.1
Q ss_pred HHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 006981 69 NVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (623)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (623)
...-+.|++++|.+.|+++. |.+...+..+...+.+.|++++|...++.+.+.. +-+..++..+...|.+.|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 34456688999999998763 4578889999999999999999999999999875 5568899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
|.+.+....+.. +.+...+..........+....+........... .................+....+...+.....
T Consensus 86 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhc
Confidence 999999998865 3455556666666666777777666666655543 33445555666677778888888888887765
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006981 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (623)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 305 (623)
. .+.+...+..+...+...|+++.|...++...+.+ +.+..+|..+...+...|++++|...+.+....+.. +..
T Consensus 164 ~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 238 (388)
T d1w3ba_ 164 T---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp H---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred c---CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHH
Confidence 3 23456677888889999999999999999998876 567889999999999999999999999999886543 667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (623)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (623)
.+..+...+.+.|++++|...+++..+.. +-+..++..+...|.+.|++++|.+.++...... +.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHH
Confidence 78888899999999999999999998875 4467889999999999999999999999887654 467788999999999
Q ss_pred cCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 006981 386 DGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMC 454 (623)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~ 454 (623)
+.|++++|++.|++..+. .| +..++..+..++.+.|++++|...|+++++ +.|+ ...|..|..+|
T Consensus 317 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 999999999999999874 56 567788899999999999999999999987 5665 44566555543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.6e-12 Score=125.80 Aligned_cols=228 Identities=11% Similarity=-0.041 Sum_probs=132.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006981 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (623)
Q Consensus 97 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (623)
.....+.+.|++++|+..|+.+.+.. |-+..+|..+..++...|++++|...|++..+.. +-+...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34556778888999999998888765 4467788888888888899999988888887764 346778888888888889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHH----------------HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 006981 177 QVAKAFGAYGIMRSKNVKPDRVVF----------------NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (623)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~----------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l 240 (623)
++++|.+.+++..... |+.... ...+..+...+...+|.+.|.+..... +-..+..++..+
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~~~~~~l 178 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGL 178 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh-hcccccccchhh
Confidence 9999988888877642 221111 001111222233444444444443321 112233444444
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (623)
...+...|++++|...|+...... +.+..+|..+...|.+.|++++|.+.|++..+.... +...+..+..+|.+.|++
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~ 256 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAH 256 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCH
Confidence 455555555555555555554443 334445555555555555555555555554443211 334444444555555555
Q ss_pred HHHHHHHHHHH
Q 006981 321 EAAFEILQEAK 331 (623)
Q Consensus 321 ~~a~~~~~~~~ 331 (623)
++|+..|.+..
T Consensus 257 ~~A~~~~~~al 267 (323)
T d1fcha_ 257 REAVEHFLEAL 267 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.4e-11 Score=118.89 Aligned_cols=92 Identities=10% Similarity=0.021 Sum_probs=74.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHc
Q 006981 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (623)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (623)
...-...+++.|++++|+..|+++.+.+ |.+...+..++.++...|++++|...|++.. +.+...|..+...+..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence 3444556789999999999999999988 6777777778888888888888888887643 5567788888888888
Q ss_pred CCChHHHHHHHHHHHHc
Q 006981 105 SKDSEGAFQVLRLVQEA 121 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~ 121 (623)
.|++++|.+.++.+...
T Consensus 100 ~~~~~~A~~~~~~~~~~ 116 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRY 116 (323)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cccccccccchhhHHHh
Confidence 88888888888887764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=2.6e-08 Score=94.86 Aligned_cols=214 Identities=7% Similarity=0.028 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
..|+.+...+.+.+.+++|+++++.+.+.+ |-+...|+....++...| ++++|+..++...+.. +-+..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 456666667777788888888888888765 555667777777777765 4788888888877664 4467778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC--
Q 006981 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-- 249 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~-- 249 (623)
+.+.|++++|+..++++.+.. +.+...|..+...+.+.|++++|.+.++.+.+.. +.+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~---p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC---CccHHHHHHHHHHHHHccccc
Confidence 888888888888888887653 4457777778888888888888888888877642 3345566666666665554
Q ss_pred ----hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 006981 250 ----VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFA 314 (623)
Q Consensus 250 ----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~ 314 (623)
+++|...+....+.+ +.+..+|+.+...+... ..+++.+.+....+....+ +...+..+...|
T Consensus 198 ~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 456777777777665 55667777665554443 3456666666655432222 334444444444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=4.8e-08 Score=92.77 Aligned_cols=185 Identities=11% Similarity=0.059 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (623)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (623)
.++|..++++..+...+.+...|...+..+.+.|+++.|..+|+++.+........+|...+....+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455555555543333444455555555555556666666665555432112233455555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-
Q 006981 188 MRSKNVKPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI- 265 (623)
Q Consensus 188 m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~- 265 (623)
+.+.+ +.+...|...... +...|+.+.|.++|+.+... .+.+...+...+..+.+.|+++.|+.+|++..+...
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 55442 1122222222221 22234555555555555442 122334444555555555555555555555444321
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 266 KG--TPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (623)
Q Consensus 266 ~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (623)
.| ....|...+..-...|+.+.+.++++++.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 12345555554445555555555555443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=7e-08 Score=91.61 Aligned_cols=188 Identities=15% Similarity=0.099 Sum_probs=147.9
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006981 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (623)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (623)
+..++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+++...........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578888898888765566778888889999999999999999999887654444567888888888999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCC-C
Q 006981 328 QEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-L 405 (623)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~ 405 (623)
..+.+.+. .+...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+.++|..+|++..... .
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99887753 334444444433 345688999999999988753 3567889999999999999999999999987753 3
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 406 CPN--TITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 406 ~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
.|+ ...|...+.--...|+.+.+..+++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443 45788888877888999999999988865
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=7.3e-08 Score=91.61 Aligned_cols=216 Identities=8% Similarity=-0.007 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006981 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (623)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (623)
...++.+...+.+.+.+++|+++++++++.. +-+..+|+....++...| ++++|+..+++..+.. +-+..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3466667777888889999999999999875 446778888888888876 4899999999887764 446788888888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-
Q 006981 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD- 284 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 284 (623)
.+.+.|++++|++.+.++.+.. +.+..+|..+...+.+.|++++|...++.+.+.+ +.+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d---p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh---hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHcccc
Confidence 8999999999999999988642 4457888888899999999999999999998887 6677788877766666554
Q ss_pred -----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 006981 285 -----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACS 350 (623)
Q Consensus 285 -----~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~ 350 (623)
+++|++.+.+..+.... +...|..+...+.. ...+++.+.+....+.... .+...+..+...|.
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 57788888877776433 56666655554433 3456677777666554322 23445555555553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=3.7e-07 Score=87.94 Aligned_cols=268 Identities=11% Similarity=-0.003 Sum_probs=149.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 006981 99 MSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VHTYGALI 169 (623)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li 169 (623)
...+...|++++|++++++..+.....+ ..++..+...|...|++++|...|++..+... .++ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4456677888888888887776532211 23566677777888888888888877654210 111 23455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC--CCCCHHHHHHH
Q 006981 170 DGCAKAGQVAKAFGAYGIMRS----KNVKPD---RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGAL 240 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~----~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~~~l 240 (623)
..+...|++..+...+.+... .+.... ...+..+...+...|+++.+...+......... ......++..+
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 677777888888777766543 111111 123444556667777777777777666542111 11223344455
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHH
Q 006981 241 MKACANAGQVDRAREVYKMIHKYN--IKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALI 311 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~li 311 (623)
...+...++...+...+....... ... ....+..+...+...|++++|...+.......... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 556666777777766665543321 111 12234455556666677777777666654432211 123344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 312 DFAGHAGKVEAAFEILQEAKN----QGISVG-IISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
..+...|++++|...++.... .+..|+ ..++..+...|.+.|++++|.+.+++..
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666666666665542 122222 2345555566666666666666665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=3.5e-07 Score=88.09 Aligned_cols=265 Identities=11% Similarity=-0.024 Sum_probs=143.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHH
Q 006981 172 CAKAGQVAKAFGAYGIMRSKNVKPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKA 243 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~~ll~~ 243 (623)
+...|++++|++++++........+ ...++.+...+...|++++|...+.+....... .++ ..++..+...
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHH
Confidence 3444555555555544443311000 123333444444555555555555443321000 011 1233344445
Q ss_pred HHHcCChHHHHHHHHHHHhc----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHH
Q 006981 244 CANAGQVDRAREVYKMIHKY----NIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG----VIPDEVFLSALID 312 (623)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----~~p~~~~~~~li~ 312 (623)
+...|++..+...+...... .... ....+..+...+...|+++.+...+....... .......+.....
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 55566666666555544321 1111 11234455566666677777777666655421 1122344445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHH
Q 006981 313 FAGHAGKVEAAFEILQEAKNQ----GISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITA 383 (623)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~ 383 (623)
.+...+....+...+...... +..+ ....+..+...+...|+.++|...++......... ....+..+...
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 566667777777666655432 1111 12344556666778888888888887765432221 23455667778
Q ss_pred HHcCCChhhHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 384 LCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
+...|++++|...+++... .+..|+ ..++..+..++.+.|++++|.+.+++..+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888899988888887653 344443 34566777888899999999998887754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=1e-08 Score=94.84 Aligned_cols=199 Identities=10% Similarity=-0.048 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (623)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (623)
..+|..+...+.+.|++++|++.|++..+.. +-++.+|..+..+|.+.|++++|++.|++..+.. +.+..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHH
Confidence 3456666777888888888888888888764 4567788888888888888888888888888764 3346677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC--
Q 006981 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-- 249 (623)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~-- 249 (623)
|...|++++|...|++..+.. +.+......+..++.+.+..+.+..+....... .++...++ ++..+.....
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~ 188 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS----DKEQWGWN-IVEFYLGNISEQ 188 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----CCCSTHHH-HHHHHTTSSCHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc----chhhhhhh-HHHHHHHHHHHH
Confidence 888888888888888877653 234444433444445555555444444444332 11111111 2222211111
Q ss_pred --hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 250 --VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (623)
Q Consensus 250 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 299 (623)
.+.+...+....... +....+|..+...|...|++++|.+.|++.....
T Consensus 189 ~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 189 TLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 111111111111110 1112356667777777777777777777777653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.84 E-value=2.1e-08 Score=96.55 Aligned_cols=250 Identities=7% Similarity=-0.056 Sum_probs=118.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----------HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC----------AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (623)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----------~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (623)
.+..++|+++++...+.. |-+...|+..-..+ ...|++++|+..++...+.. +.+...|..+..++..
T Consensus 42 ~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 334467777777766653 22333343222222 12233556666666665543 3345555555555555
Q ss_pred cCC--HHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChH
Q 006981 175 AGQ--VAKAFGAYGIMRSKNVKPDRVVFNA-LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (623)
Q Consensus 175 ~g~--~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (623)
.++ +++|+..+.++.+.. +++...+.. ....+...+..++|...++.+.... +-+...|+.+...+.+.|+++
T Consensus 120 ~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCC
T ss_pred hccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCHH
Confidence 443 566666666665542 223343332 2344445566666666666555431 234455555555666666555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (623)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (623)
+|...+....+.. ........ .+...+..+++...+....
T Consensus 196 ~A~~~~~~~~~~~-----~~~~~~~~-----------------------------------~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 196 DSGPQGRLPENVL-----LKELELVQ-----------------------------------NAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp CSSSCCSSCHHHH-----HHHHHHHH-----------------------------------HHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHhHHhH-----HHHHHHHH-----------------------------------HHHHhcchhHHHHHHHHHH
Confidence 5443333222211 00011111 1222333344444444444
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 006981 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (623)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (623)
... +++...+..+...+...|+.++|...+.+..... +.+..+|..+...|.+.|+.++|++.+++..+
T Consensus 236 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 236 LGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 332 2233334444445555556666666665555332 11334455555566666666666666666655
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=3.9e-08 Score=90.73 Aligned_cols=221 Identities=11% Similarity=-0.040 Sum_probs=150.0
Q ss_pred CCHHHHHHHHHHHHHcCCCC--CchHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCChHHHHH
Q 006981 39 GRISECIDLLEDMERKGLLD--MDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (623)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~ 113 (623)
++.+.|+.-+++........ ....++..++..+...|++++|+..|++.. +.++.+|+.+..++.+.|++++|+.
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence 34566777777777654322 234456666778888999999999998753 6788999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006981 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193 (623)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 193 (623)
.|+++.+.. +-+..++..+..+|...|++++|.+.|+...+.. +.+......+...+.+.+..+.+..+........
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 169 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence 999999875 4567788899999999999999999999998864 3355555555556666676666666666655542
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 006981 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYN 264 (623)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (623)
++...++ ++..+...........-............|+ ..++..+...|...|++++|...|+...+.+
T Consensus 170 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 170 -KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp -CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2222222 2233322222222111111111100001122 2356678889999999999999999998865
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.82 E-value=1.3e-08 Score=98.12 Aligned_cols=246 Identities=5% Similarity=-0.086 Sum_probs=137.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCchHHHHHHHHH----------HhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCC
Q 006981 40 RISECIDLLEDMERKGLLDMDKVYHARFFNV----------CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK 106 (623)
Q Consensus 40 ~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~ 106 (623)
..++|++++++..+.+ |............ ....|.+++|+.+|+... +.+...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc
Confidence 4589999999999887 5554332222211 223455677777776543 445666666666665554
Q ss_pred C--hHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006981 107 D--SEGAFQVLRLVQEAGLKADCKLYT-TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (623)
Q Consensus 107 ~--~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (623)
+ +++|+..+..+.+.. +++...+. .....+...+..++|+..++.+.+.. +-+..+|+.+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 3 567777777776654 33444443 33355555677777777777766654 3356667777777777777666554
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006981 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (623)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (623)
.+...... .|+ ...+...+...+..+++...+....... +++...+..+...+...++.++|...+.+..+.
T Consensus 200 ~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 200 QGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR---AEPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp CCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC---CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC---cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44333221 011 1112222333444455555555544321 222333444455555556666666666665554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
+ +.+..+|..+...|...|++++|.+.+++..+.
T Consensus 272 ~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 272 N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp C-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred C-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4 334455566666666666666666666666654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=4.3e-06 Score=72.50 Aligned_cols=122 Identities=15% Similarity=0.005 Sum_probs=98.8
Q ss_pred HhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 006981 71 CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (623)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 150 (623)
....|+++.|++.|+++.+++..+|..+..++...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.|
T Consensus 15 ~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~ 93 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDL 93 (192)
T ss_dssp HHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHH
Confidence 4456789999999999888888899999999999999999999999999876 567888999999999999999999999
Q ss_pred HHHHHCCC--------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006981 151 HEMVNAGI--------------EPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193 (623)
Q Consensus 151 ~~m~~~g~--------------~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 193 (623)
++.....- .++ ..++..+..++.+.|++++|.+.|........
T Consensus 94 ~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 94 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 98875310 011 24556677788888999999888888776543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.47 E-value=5.3e-06 Score=77.39 Aligned_cols=239 Identities=12% Similarity=0.053 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-
Q 006981 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA- 121 (623)
Q Consensus 43 ~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~- 121 (623)
++-+++.+..+.+. ....+...+. ....+++++|..+|.+ ....|...+++++|.+.|.++.+.
T Consensus 3 ~~~~~l~~aek~~~--~~~~~~~~~~--~~~~~~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~ 67 (290)
T d1qqea_ 3 DPVELLKRAEKKGV--PSSGFMKLFS--GSDSYKFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQ 67 (290)
T ss_dssp CHHHHHHHHHHHSS--CCCTHHHHHS--CCSHHHHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC--cchhHHHHhc--CCccccHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 46677777766653 2222222211 2344568888877554 467788899999999999888753
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHh-
Q 006981 122 ---GLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHTYGALIDGCAK-AGQVAKAFGAYGIMRS- 190 (623)
Q Consensus 122 ---g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~- 190 (623)
+-++ -..+|..+..+|.+.|++++|.+.+++..+. |- .....++..+...|-. .|++++|+..|++..+
T Consensus 68 ~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l 147 (290)
T d1qqea_ 68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 2111 1357888889999999999999988876542 10 1113445566666644 5888998888887653
Q ss_pred ---CCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC---CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 006981 191 ---KNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDH-ITIGALMKACANAGQVDRAREVYKMIHK 262 (623)
Q Consensus 191 ---~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (623)
.+.++. ..++..+...+...|++++|.+.|++......... ... ..+...+..+...|+++.|...++...+
T Consensus 148 ~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 221111 23466677788888888888888888765321111 111 1223344455667788888888877765
Q ss_pred cCCCC----CHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 006981 263 YNIKG----TPEVYTIAINCCSQ--TGDWEFACSVYDDMT 296 (623)
Q Consensus 263 ~~~~~----~~~~~~~li~~~~~--~g~~~~A~~l~~~m~ 296 (623)
..... .......++.++-. .+.+++|+..|+++.
T Consensus 228 ~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 53211 11233445555544 234666666665443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=3.8e-05 Score=66.22 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=54.1
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006981 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (623)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (623)
.+...|+++.|++.|.++. +|+..++..+..+|.+.|++++|.+.|++..+.+ +.+...|..+..+|.+.|++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 3455666666666665432 3455566666666666777777777776666665 45566666666667777777
Q ss_pred HHHHHHHHHHHh
Q 006981 286 EFACSVYDDMTK 297 (623)
Q Consensus 286 ~~A~~l~~~m~~ 297 (623)
++|++.|++...
T Consensus 87 ~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 87 DLAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777666666554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2.8e-05 Score=60.90 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=59.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (623)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (623)
...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..++...+.. +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 445566667777777776666654 4456666666666666777777777666666654 44566666666666666777
Q ss_pred HHHHHHHHHHHhC
Q 006981 179 AKAFGAYGIMRSK 191 (623)
Q Consensus 179 ~~A~~~~~~m~~~ 191 (623)
++|+..|++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 7777666666654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.23 E-value=0.0017 Score=58.60 Aligned_cols=224 Identities=11% Similarity=-0.022 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006981 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (623)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 166 (623)
|+..+..|...+-+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34556666666777788888888888877765 45555556666665 457777777777777654 344444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 006981 167 ALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG----QSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (623)
Q Consensus 167 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 238 (623)
.+...+.. ..+.+.|...++.....|. ......+...+. .......+...+..... ..+...+.
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 146 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-----LNDGDGCT 146 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-----TTCHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc-----ccccchhh
Confidence 44444433 4566777777777776652 222222322222 23445566666665543 23445556
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 239 ALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (623)
Q Consensus 239 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 310 (623)
.|...|.. ..+...+...++...+.+ +..+...+...|.. ..++++|...|.+..+.| +...+..|
T Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~L 220 (265)
T d1ouva_ 147 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 220 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred hhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHH
Confidence 66666654 234555666666655543 33444444444443 345666666666665554 23334444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCC
Q 006981 311 IDFAGH----AGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 311 i~~~~~----~g~~~~a~~~~~~~~~~~ 334 (623)
...|.+ ..+.++|.+.|++..+.|
T Consensus 221 G~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 221 GAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 444433 224555666665555554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=2.1e-05 Score=73.16 Aligned_cols=195 Identities=9% Similarity=0.045 Sum_probs=111.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHH
Q 006981 241 MKACANAGQVDRAREVYKMIHKYN----I-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK----GV-IPDEVFLSAL 310 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~-~p~~~~~~~l 310 (623)
...|...+++++|...|.++.+.. - +....+|..+..+|.+.|++++|.+.+++.... |. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 445777888888888887775531 1 111346778888888888888888888765542 11 0112344455
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----H-HHHH
Q 006981 311 IDFAGH-AGKVEAAFEILQEAKNQ----GISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-----V-STMN 378 (623)
Q Consensus 311 i~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~-~~~~ 378 (623)
...|.. .|++++|.+.+.+..+. +.++ ...++..+...|.+.|++++|...|+++........ . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 555533 57788888777766432 1111 133466677777777777777777777665321111 1 1233
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 006981 379 ALITALCDGDQLPKTMEVLSDMKSLGLC-PN---TITYSILLVACER--KDDVEVGLMLLSQA 435 (623)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~---~~t~~~ll~a~~~--~g~~~~a~~~~~~~ 435 (623)
.++..+...|+++.|...+++..+.... ++ ......++.++.. .+.+++|...|+++
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3444556677777777777776653210 11 2234445555443 23456666655443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=4.8e-05 Score=59.53 Aligned_cols=86 Identities=15% Similarity=0.064 Sum_probs=35.1
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (623)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (623)
+.+.|++++|...|+...+.+ +.+...|..+..+|.+.|++++|+..+....+.+.. +...|..+..++...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHHH
Confidence 334444444444444444333 333344444444444444444444444444433221 333333444444444444444
Q ss_pred HHHHHHHH
Q 006981 324 FEILQEAK 331 (623)
Q Consensus 324 ~~~~~~~~ 331 (623)
+..++...
T Consensus 91 ~~~~~~a~ 98 (117)
T d1elwa_ 91 KRTYEEGL 98 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=5.3e-05 Score=63.10 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=69.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (623)
....+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|.+.|++.++.. +.+..+|..+..+|...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 3556777888888888888887765 5567777778888888888888888888877764 4456777788888888888
Q ss_pred HHHHHHHHHHHHhC
Q 006981 178 VAKAFGAYGIMRSK 191 (623)
Q Consensus 178 ~~~A~~~~~~m~~~ 191 (623)
+++|...|++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 88888888877765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=6.8e-05 Score=62.38 Aligned_cols=91 Identities=12% Similarity=-0.034 Sum_probs=55.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006981 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (623)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (623)
...|.+.|++++|...|+++.+.+ +.+...|..+...|.+.|++++|...|++..+.... +...|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence 344556666666666666666654 455666666666666666666666666666654322 445566666666666666
Q ss_pred HHHHHHHHHHHHC
Q 006981 321 EAAFEILQEAKNQ 333 (623)
Q Consensus 321 ~~a~~~~~~~~~~ 333 (623)
++|...+.+..+.
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6666666666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.08 E-value=2.7e-05 Score=67.77 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
|++..+......+.+.|++++|+..|+...+.. |.+...|..+..+|.+.|++++|+..|++.++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 445555555666667777777777776666654 4456666666667777777777777776666542 22455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 006981 170 DGCAKAGQVAKAFGAYGIMRS 190 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~ 190 (623)
.+|.+.|++++|+..|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 667777777777766666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.07 E-value=0.0036 Score=56.42 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCh
Q 006981 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQL 390 (623)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~ 390 (623)
+...+...+....+.| +......+...|.. ..++++|...|.+..+.| ++..+..|...|.+ ..+.
T Consensus 161 ~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~ 234 (265)
T d1ouva_ 161 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE 234 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred ccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCH
Confidence 3444455555444443 33333334333433 345666666666666543 34444455555543 2356
Q ss_pred hhHHHHHHHHHHCC
Q 006981 391 PKTMEVLSDMKSLG 404 (623)
Q Consensus 391 ~~A~~l~~~m~~~g 404 (623)
++|.+.|++..+.|
T Consensus 235 ~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 235 KQAIENFKKGCKLG 248 (265)
T ss_dssp TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc
Confidence 66666666666555
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.03 E-value=4.5e-05 Score=66.24 Aligned_cols=92 Identities=13% Similarity=-0.076 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 315 (623)
.+......|.+.|++++|+..|.+..+.+ +.++..|+.+..+|.+.|++++|+..|.+.++.... +..+|..+..+|.
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~~~~ 83 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 33334444444444444444444444433 334444444444444444444444444444433211 2333344444444
Q ss_pred hcCCHHHHHHHHHH
Q 006981 316 HAGKVEAAFEILQE 329 (623)
Q Consensus 316 ~~g~~~~a~~~~~~ 329 (623)
+.|++++|...|+.
T Consensus 84 ~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 84 EMESYDEAIANLQR 97 (201)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 44444444444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=2e-05 Score=62.07 Aligned_cols=107 Identities=14% Similarity=0.037 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh---hhHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 006981 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCPNT-ITYSILLVA 418 (623)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~-~t~~~ll~a 418 (623)
..+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++. ++|+.+|+++......|+. .++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666666777777777777766654 34566666677677654443 3577777776654322322 255666677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (623)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 452 (623)
|.+.|++++|++.|+++++ +.|+..-...+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELER 113 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHHH
Confidence 7777777777777777776 4566554444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.94 E-value=5.4e-05 Score=58.66 Aligned_cols=89 Identities=10% Similarity=-0.029 Sum_probs=59.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (623)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (623)
+...+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|+..|++..+.. +.+..+|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 3455666777777777777776654 3356677777777777777777777777766653 3356667777777777777
Q ss_pred HHHHHHHHHHH
Q 006981 178 VAKAFGAYGIM 188 (623)
Q Consensus 178 ~~~A~~~~~~m 188 (623)
+++|++.|++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=5.4e-05 Score=59.52 Aligned_cols=105 Identities=13% Similarity=0.041 Sum_probs=74.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 006981 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNALITA 383 (623)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~li~~ 383 (623)
..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++ +++|..+|+++.+....|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 346667777788888888888887765 4567777788888876554 4568888888876543333 2366778888
Q ss_pred HHcCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 006981 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (623)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (623)
|.+.|++++|++.|+++++ +.|+..-...+
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l 111 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKEL 111 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHH
Confidence 8888888888888888887 35765443333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=0.011 Score=54.62 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006981 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (623)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (623)
+|..--..+..-|.+.|.++.|..++..+. -|..++..+.+.++++.|.+++.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 344444445555666666666666665442 1444556666666666666655433 1455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 006981 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (623)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (623)
..+.+......| .+.......+......++..|-..|.+++...+++..... -.++...++-++..|++.
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~---~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---TTCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC---CccchHHHHHHHHHHHHh
Confidence 666655554332 1122222334444455666666666666666666654421 134445555666666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.82 E-value=9.7e-05 Score=57.12 Aligned_cols=83 Identities=11% Similarity=0.019 Sum_probs=34.0
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006981 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (623)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (623)
+.+.|++++|...|++..+.+ +.+..+|..+...+.+.|++++|+..|++..+.... +...+..+...|...|+.++|
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHHH
Confidence 344444444444444444433 223444444444444444444444444444333221 233333344444444444444
Q ss_pred HHHHH
Q 006981 324 FEILQ 328 (623)
Q Consensus 324 ~~~~~ 328 (623)
.+.++
T Consensus 104 ~~~l~ 108 (112)
T d1hxia_ 104 LASLR 108 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.72 E-value=0.018 Score=53.24 Aligned_cols=176 Identities=11% Similarity=0.072 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006981 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (623)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (623)
.||..--..+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+.. +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 45555556678888899999999999987652 7788888999999999988887552 56789999
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006981 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (623)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (623)
...+.+.....-+. +.. .....+......++..|-..|.++....+++...... ..+...++.++..|++.+
T Consensus 76 ~~~l~~~~e~~la~-----i~~--~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLAQ-----MCG--LHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHHH-----HTT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHHH-----HHH--HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 99998887765432 111 1223455566788999999999999999999876553 567788999999999875
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006981 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (623)
Q Consensus 284 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (623)
. ++. .+.+...+.. .-...++..|.+.+-++++.-++..
T Consensus 148 ~-~kl---~e~l~~~s~~---y~~~k~~~~c~~~~l~~elv~Ly~~ 186 (336)
T d1b89a_ 148 P-QKM---REHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDK 186 (336)
T ss_dssp H-HHH---HHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred h-HHH---HHHHHhcccc---CCHHHHHHHHHHcCChHHHHHHHHh
Confidence 3 333 3333331111 1133455666666665555544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.65 E-value=0.00099 Score=54.53 Aligned_cols=77 Identities=21% Similarity=0.132 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (623)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (623)
.+|+.+..+|.+.|++++|++.+++.++.. +.+..+|..+..++...|++++|...|++..+ +.|+.......+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 467778888999999999999999988753 33788999999999999999999999999988 456554444344433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.00074 Score=53.38 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=66.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC-----HHHHHHH
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN-----VHTYGAL 168 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~-----~~~~~~l 168 (623)
+..+...+.+.|++++|+..|.+.++.+ +.+..++..+..+|.+.|++++|++.++++++... .+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456667777888888888888887765 45677777788888888888888888877765310 001 2355666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 006981 169 IDGCAKAGQVAKAFGAYGIMRSK 191 (623)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~~~ 191 (623)
...+...+++++|+..|++....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 66677777777777777766543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.0017 Score=54.22 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=26.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (623)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (623)
.+..+|.+.|++++|...++...+.+ |.++.+|..+..+|...|++++|+..|++..+
T Consensus 67 nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 67 NLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444444444444444444443 33444444444444444444444444444444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.0019 Score=53.88 Aligned_cols=63 Identities=13% Similarity=-0.086 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
+|+.+..+|.+.|++++|+..++..+..... +...+..+..+|...|++++|...|+...+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4555566666666666666666666655432 55566666666666666666666666665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=5.3e-05 Score=76.29 Aligned_cols=112 Identities=13% Similarity=-0.023 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006981 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (623)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (623)
..+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...|.+..+.. +-+...|+.|...|
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 344444444555555555554444333211 11334445555555666666666666655543 23445566666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006981 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (623)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (623)
...|+..+|...|.+..... +|-..++..|...|.+
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 66666666666666555543 3455555555555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00061 Score=53.88 Aligned_cols=93 Identities=11% Similarity=0.186 Sum_probs=61.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCC-CCC-----HHHHHHHHH
Q 006981 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL-CPN-----TITYSILLV 417 (623)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-----~~t~~~ll~ 417 (623)
.+...|.+.|++++|...|.+..+.. +.+...|..+..+|.+.|++++|++.++++++... .+. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 45556777777777777777776654 24566777777777777777777777777654210 011 235666667
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006981 418 ACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 418 a~~~~g~~~~a~~~~~~~~~ 437 (623)
.+...+++++|...|++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 77777788888888777665
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=5e-05 Score=76.47 Aligned_cols=113 Identities=10% Similarity=-0.082 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006981 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (623)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 313 (623)
...+..+...+.+.|+.+.|...+........ ..++..+...+...|++++|...|.+..+.... +...|+.+...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC---QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHH
Confidence 34455555666666676666666655443321 245566667777777777777777777665432 44667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006981 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (623)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (623)
+...|+..+|...|.+..... +|-..++..|...+.+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 777777777777777776654 4556666666665544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=0.00057 Score=57.61 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=64.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCh
Q 006981 31 SYNRLIRQGRISECIDLLEDMERK--GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (623)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 108 (623)
..+.+...|++++|.+.|.+.... |.+..+......+ ...+.+ +.+.....+..+...+.+.|++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~---------~~~r~~----l~~~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV---------EPFATA----LVEDKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTH---------HHHHHH----HHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHH---------HHHHHH----HHHHHHHHHHHHHHHHHHCCCc
Confidence 344556889999999999998864 2110000000000 000000 0011233455566666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHH
Q 006981 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-----AGIEPNVH 163 (623)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~ 163 (623)
++|+..++.+.+.. +-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...
T Consensus 84 ~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 84 SAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred hHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 66666666666654 45566666666666666666666666666532 35555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.38 E-value=0.0029 Score=51.58 Aligned_cols=106 Identities=12% Similarity=-0.012 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (623)
+..-...+.+.|++.+|+..|....+.-.. ++.... .... .....+|+.+..
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~----~~~~~~~~Nla~ 75 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKK----NIEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------Hhhh----hHHHHHHhhHHH
Confidence 444455667788888888888877653110 111000 0000 011234455555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
+|.+.|++++|+..+++..+.. +.+..+|..+..++...|++++|...|....+
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666666555542 33455555566666666666666666655554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.30 E-value=0.0017 Score=54.01 Aligned_cols=63 Identities=8% Similarity=-0.085 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
...|..+..+|.+.|++++|+..+++.++.. +.+..+|..+..++.+.|++++|.+.|....+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3345555555666666666666666665543 33455555566666666666666666665554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.30 E-value=0.0021 Score=53.43 Aligned_cols=62 Identities=3% Similarity=-0.076 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (623)
.+..+..++.+.|++++|+..+..+.+.+ +.+..+|..+..+|...|++++|+..|++..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444455555555555555555555544 344455555555555555555555555555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.27 E-value=0.0033 Score=52.70 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHH
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEV 305 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~ 305 (623)
.+..+...+.+.|++++|...++.+.+.+ +.+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 44556666666677777777666666665 55666666667777777777766666666532 35666544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.20 E-value=0.0033 Score=52.18 Aligned_cols=95 Identities=8% Similarity=-0.051 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc---CCCCC-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 006981 95 FNMLMSVCASSKDSEGAFQVLRLVQEA---GLKAD-----------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160 (623)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 160 (623)
+.-....+.+.|++.+|+..|+..... ....+ ..+|+.+..+|.+.|++++|+..++...+.. +.
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~ 96 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SA 96 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cc
Confidence 444556667777777777777665531 00110 1123333334444444444444444444432 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006981 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (623)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (623)
+..+|..+..+|...|++++|...|.+...
T Consensus 97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.19 E-value=0.00085 Score=54.33 Aligned_cols=37 Identities=14% Similarity=0.001 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhH
Q 006981 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75 (623)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~ 75 (623)
+.+.+++|++.|+...+.+ |.+...+..++.++...+
T Consensus 9 r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~ 45 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELS 45 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhh
Confidence 4556777888888777777 666666666665555433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.18 E-value=0.0098 Score=49.13 Aligned_cols=63 Identities=8% Similarity=-0.011 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 299 (623)
.|+.+..+|.+.|++++|+..++...+.+ +.+..+|..+..+|...|++++|...|.+.....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34445566666777777777777666655 5566666666666777777777777776666543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.11 E-value=0.00061 Score=61.42 Aligned_cols=120 Identities=11% Similarity=0.040 Sum_probs=63.4
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006981 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKA 181 (623)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A 181 (623)
.+.|++++|+..+++.++.. |.|...+..+...++..|++++|.+.|+...+. .|+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence 44577777777777777664 556677777777777777777777777777665 233 33343333333333332222
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006981 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (623)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (623)
..-.......+-+++...+......+...|+.++|.+++.++.+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 21111111111122223333334455566667777666666544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.09 E-value=0.00016 Score=65.47 Aligned_cols=54 Identities=11% Similarity=0.233 Sum_probs=36.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhhhHHHHHHHHHhhhC
Q 006981 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (623)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (623)
|...++.|++++|+..+++..+.. |.+......++.++...|++++|.+.|+..
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a 56 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQS 56 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455667788888888888888777 556555555666665556666666655543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.06 E-value=0.0012 Score=53.36 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-----------ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006981 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGD-----------QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (623)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (623)
++|...|++..+.. +.+..+|..+..+|...| .+++|.+.|++..+ +.|+..+|..-+..+
T Consensus 58 ~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~----- 129 (145)
T d1zu2a1 58 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT----- 129 (145)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH-----
Confidence 44555555554433 224445555555544332 24556666666555 355555544444332
Q ss_pred HHHHHHHHHHHHHCC
Q 006981 425 VEVGLMLLSQAKEDG 439 (623)
Q Consensus 425 ~~~a~~~~~~~~~~g 439 (623)
..+.+++.++.+.|
T Consensus 130 -~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 130 -AKAPQLHAEAYKQG 143 (145)
T ss_dssp -HTHHHHHHHHHHSS
T ss_pred -HHHHHHHHHHHHHh
Confidence 33445555555444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.29 E-value=0.034 Score=45.01 Aligned_cols=88 Identities=10% Similarity=0.008 Sum_probs=43.1
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCC-CC----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCC---
Q 006981 101 VCASSKDSEGAFQVLRLVQEAGLK-AD----------CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GIEPN--- 161 (623)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~-~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~~~--- 161 (623)
.+.+.|++++|++.|++..+.... |+ ..+|+.+..+|.+.|++++|.+.+++..+. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666666542110 11 234555666666666666666555554431 01111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006981 162 --VHTYGALIDGCAKAGQVAKAFGAYGIM 188 (623)
Q Consensus 162 --~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (623)
..+++.+..+|...|++++|+..|++.
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~A 126 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKV 126 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 113344445555555555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.13 E-value=0.042 Score=44.37 Aligned_cols=91 Identities=11% Similarity=0.012 Sum_probs=60.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC-CC----------CHHHHHHHHHHHHcCCChhhHHHHHHHHHHC-----CCCCC--
Q 006981 347 GACSNAKNWQKALELYEHMKSIKL-KP----------TVSTMNALITALCDGDQLPKTMEVLSDMKSL-----GLCPN-- 408 (623)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~-~~----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-- 408 (623)
..+.+.|++++|...|++..+... .| ...+|+.+..+|.+.|++++|++.+++.++. ...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 344556677777777666654210 01 1356777788888888888888888776541 12222
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006981 409 ---TITYSILLVACERKDDVEVGLMLLSQAKE 437 (623)
Q Consensus 409 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (623)
...+..+..++...|++++|...|++.++
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22466677889999999999999988764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.047 Score=39.67 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=29.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006981 97 MLMSVCASSKDSEGAFQVLRLVQEAG-----LKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (623)
Q Consensus 97 ~li~~~~~~~~~~~A~~~~~~m~~~g-----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (623)
.+...+.+.|++++|+..|++..+.. ..++ ..+++.|..++.+.|++++|++.+++.++.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34445555555555555555544321 0111 334555555555555555555555555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.055 Score=39.28 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 006981 236 TIGALMKACANAGQVDRAREVYKMIHKYN 264 (623)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (623)
++..+..++.+.|++++|...++++.+.+
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 44445555555555555555555555443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.55 E-value=0.54 Score=36.14 Aligned_cols=13 Identities=23% Similarity=0.320 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHh
Q 006981 355 WQKALELYEHMKS 367 (623)
Q Consensus 355 ~~~A~~~~~~m~~ 367 (623)
.++|.+.|++..+
T Consensus 75 ~~~A~~~~~~aa~ 87 (133)
T d1klxa_ 75 LRKAAQYYSKACG 87 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhc
Confidence 3444444444433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.41 E-value=0.53 Score=36.20 Aligned_cols=81 Identities=12% Similarity=-0.047 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 006981 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKN 354 (623)
Q Consensus 283 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 354 (623)
.+.++|++.+++..+.| +......|-..|.. ..+.++|.++|+...+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45556666666655554 23333333333332 235666666766666655 33444444444443 345
Q ss_pred HHHHHHHHHHHHhCC
Q 006981 355 WQKALELYEHMKSIK 369 (623)
Q Consensus 355 ~~~A~~~~~~m~~~~ 369 (623)
.++|.+.|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666655544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.52 E-value=1 Score=33.55 Aligned_cols=137 Identities=14% Similarity=0.055 Sum_probs=75.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006981 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (623)
Q Consensus 282 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (623)
.|..++..+++.+..... +..-|+.+|--....-+-+...++++.+-+. .| ..+++++......
T Consensus 15 dG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv~C 78 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVEC 78 (161)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHHH
T ss_pred hhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHHHH
Confidence 455555556655555431 3344454444444444444444444433221 11 1244555444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006981 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (623)
Q Consensus 362 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (623)
+-.+- .+....+..++.+.+.|+-+.-.++++++.+.+ +|++.....+..||.+.|...++-+++.++-+.|+
T Consensus 79 ~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 79 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 43332 344555666677777777777777777766543 66677777777777777777777777777776664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.21 E-value=1.2 Score=33.25 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006981 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (623)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (623)
+..++...+.|+-+.-.++++++.+. -.|+....-.+..+|.+.|...++-+++.+.-+.|
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33344444444444444444444332 23344444444445555555555555555444444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.76 E-value=2.6 Score=31.39 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHcCCC---hhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006981 371 KPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (623)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 446 (623)
.+.+.|--....++.+... .++|+.+|++..+.+ +.+. ..+-.|.-+|.+.|++++|++.++.+++ +.|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 3555565556666665543 457888888877642 2232 3445566678888888888888888887 5677665
Q ss_pred HHHHHHH
Q 006981 447 FKCIIGM 453 (623)
Q Consensus 447 ~~~li~~ 453 (623)
...|-.+
T Consensus 109 A~~L~~~ 115 (124)
T d2pqrb1 109 VGALKSM 115 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.82 E-value=3.5 Score=30.73 Aligned_cols=72 Identities=6% Similarity=-0.068 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHCCCCCCHHH
Q 006981 337 VGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (623)
Q Consensus 337 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 411 (623)
+...+--....++.+.. +.++|+.+|+.+.+.+. .+ ...+-.|.-+|.+.|++++|.+.++.+++ +.|+..-
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 44555555555565543 34577777777765431 12 24555666777788888888888888776 3565443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.12 E-value=4.7 Score=28.32 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=51.0
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006981 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (623)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (623)
+.-++.+-++.+....+.|++....+.+.||.+..++..|.++|+-.+.. ..++...|..++.-
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqe 84 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 84 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 34466777777777889999999999999999999999999999988743 23345678877654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.88 E-value=16 Score=34.19 Aligned_cols=313 Identities=10% Similarity=-0.005 Sum_probs=170.4
Q ss_pred ccCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH------------------HhhhHHHHHHHH
Q 006981 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNV------------------CKSQKAIKEAFR 82 (623)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~------------------~~~~~~~~~A~~ 82 (623)
.|.+..-.+.....+...|+-.+|...+..+-..|...+. .+..+... ....|+...|..
T Consensus 98 ~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~ 175 (450)
T d1qsaa1 98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTV 175 (450)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHH
Confidence 4555666667777788888888888888777666532111 11111111 112244555666
Q ss_pred HhhhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHHCCCCC
Q 006981 83 FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK--SGKVDAMFEVFHEMVNAGIEP 160 (623)
Q Consensus 83 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~ 160 (623)
+...++..........+......... .... .. ..++......+..++.+ ..+.+.+..++....... ..
T Consensus 176 l~~~l~~~~~~~~~a~~~l~~~p~~~---~~~~---~~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~ 246 (450)
T d1qsaa1 176 LAGQMPADYQTIASAIISLANNPNTV---LTFA---RT--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QL 246 (450)
T ss_dssp HHHTCCGGGHHHHHHHHHHHHCGGGH---HHHH---HH--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TC
T ss_pred HHhhCChhHHHHHHHHHHHHhChHhH---HHHH---hc--CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cc
Confidence 66655554444555555554332222 1111 11 13344433333444433 246777888887776543 22
Q ss_pred CHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH
Q 006981 161 NVHTYGALID----GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236 (623)
Q Consensus 161 ~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 236 (623)
+...+..+-. .....+..+.+..++......+. +.......+......+++..+...+..|... ......-
T Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~---~~~~~r~ 321 (450)
T d1qsaa1 247 NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME---AKEKDEW 321 (450)
T ss_dssp CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT---GGGSHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc---cccHHHH
Confidence 2222222222 22335666777777777766543 4444444555566778888888888877542 1222333
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC-HHH---HHHH
Q 006981 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV--IPD-EVF---LSAL 310 (623)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~-~~~---~~~l 310 (623)
.--+..++...|+.+.|...|..+... ++ |-.++.+-.-...+. +....+ .+. ... -...
T Consensus 322 ~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~~Lg~~~~--------~~~~~~~~~~~~~~~~~~~~~r 387 (450)
T d1qsaa1 322 RYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQRIGEEYE--------LKIDKAPQNVDSALTQGPEMAR 387 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHHHTTCCCC--------CCCCCCCSCCCCHHHHSHHHHH
T ss_pred HHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHHHcCCCCC--------CCcCCCCccHHHhhhcChHHHH
Confidence 344667888889999999888887642 22 322222211110000 000000 000 000 1123
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006981 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (623)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (623)
+..+...|....|...+..+.... +......+.....+.|.++.|+....+..
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~~---~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHcCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 445667899999999888887542 45566677888889999999988776654
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