Citrus Sinensis ID: 006984

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620---
MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGG
cccccHHHHHHccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccc
cccccccEccccccccccccccccEEEEcccccccHHHHHHHHHHEEEEEEcEHHHHHHHHHHHHHHHHHHHHcccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccHHHHHccHccHHHHHHccHHHHcHHHHEEcccc
mgmneqavddtcignpepdkgylhevtlssgidmqekqidctMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIhgnndealefsangqlsningkskmknADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINflkgnndsntkkvGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSkaesktesVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQysgksssatmynagdtddkellinptnnlagatvktSEDAVSLMKSVQAGG
mgmneqavddtcignpepdKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEivnvhhkissckHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLestknsevltmkEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINflkgnndsntkkVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSkaesktesveeqcivlsednfelknkqsfMRDKIKILESslnraniekaasakevnhRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQysgksssaTMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGG
MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKlvnlhvllmyllARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGG
*********************YLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKM**************************KFQRVLSYFIHGNND**********************************************************LKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS*************FI**********************************************************************************************************************************************LYSAIWDMETLIE*******************CIVLS*******************************************LMMEMVMQLATQRELIQKQVYSLTSENKLLVEK*****************************************************
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
*********DTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHD*****************QSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL****************LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL**************SMLYSAIWDMETLIEDLK**************EQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGG
*****QAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALE*****QLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVK***DAV****S*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIxxxxxxxxxxxxxxxxxxxxxVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSExxxxxxxxxxxxxxxxxxxxxxxxxxxxFQTSQEQLNEMDNFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxINFLKGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQSMLYSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query623 2.2.26 [Sep-21-2011]
A8MQR0627 WPP domain-interacting ta yes no 0.850 0.845 0.535 1e-143
Q8L7E5703 WPP domain-interacting ta no no 0.916 0.812 0.386 9e-96
>sp|A8MQR0|WIT2_ARATH WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1 Back     alignment and function desciption
 Score =  510 bits (1314), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 300/560 (53%), Positives = 404/560 (72%), Gaps = 30/560 (5%)

Query: 43  MTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLF 102
           + +LT++++D AY+SEKL+NLHVLLM+LLA  +DLE   M   D +  S EKAL +DLL 
Sbjct: 24  LRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEG--MGTLDSSPASFEKALTFDLLC 81

Query: 103 GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQE 162
           GIL+SE++EV+ +LD +  +IV+  +KISSCKH   +      +E KL +   SLK+S+ 
Sbjct: 82  GILESEVKEVDEVLDVLEAQIVDTSYKISSCKHGNYIV-----IEGKLGESAESLKQSRG 136

Query: 163 HVSELKMQSAKFQRVLSYFIHGN--NDEALEFSANGQLSNINGKSKMKNAD-QQRHILRM 219
            VSE+ +Q A+ +R L Y  +G   N+E++E         +  K  +K +D + ++ LRM
Sbjct: 137 QVSEITLQLAQLRRTLHYIRNGTSENEESVE---------LRQKYALKPSDLRHKNALRM 187

Query: 220 LEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVL 279
           LEKSL+REL+LEKK+ E  QNEEQLKLKLH+TE+V+ RMEEA+E +WGRFLEA+NS+EVL
Sbjct: 188 LEKSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFIWGRFLEADNSSEVL 247

Query: 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN------ 333
            GISKE++GR QI+QF+LNGS QRESELKSKL D   QL+AKD+++QKLE T +      
Sbjct: 248 TGISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGTISENSEIV 307

Query: 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393
           SEVLT++E VKS E++LK +++ L++ NA  Q     L EM+N  ES+KE+L+ AESRAE
Sbjct: 308 SEVLTLREYVKSAEQKLKNTDLELKSVNASKQEILVHLAEMENANESVKENLFEAESRAE 367

Query: 394 SAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453
           S E K+ +L   NLEL+EE+NFLK  +D  TKKV  LE Q+R+LE+Q+Q +KVSSEA+QE
Sbjct: 368 SGEAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEVQVQNSKVSSEANQE 427

Query: 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513
           QQ+MLYSAIWDMETLIEDLKSK SKAES+TE+VEEQCIVLS  N EL    SF+R K K 
Sbjct: 428 QQNMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSELNKDVSFLRQKAKS 487

Query: 514 LESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573
           LE+ L+ AN EK   A+E+  R K++M+M++QL+++RE IQ+Q+YSL  ENK+L      
Sbjct: 488 LEAMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYSLAKENKIL-----R 542

Query: 574 SGKSSSATMYNAGDTDDKEL 593
             + S+    N     DKEL
Sbjct: 543 VNQCSNTYQRNGSYAGDKEL 562
Together with WIT1, required for the nuclear envelope docking of RANGAP proteins in root tips.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8L7E5|WIT1_ARATH WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query623
255547013601 conserved hypothetical protein [Ricinus 0.951 0.986 0.599 0.0
297738216 735 unnamed protein product [Vitis vinifera] 0.947 0.802 0.579 0.0
147817708 745 hypothetical protein VITISV_040555 [Viti 0.939 0.785 0.552 1e-176
359473487629 PREDICTED: WPP domain-interacting tail-a 0.855 0.847 0.589 1e-172
224111830502 predicted protein [Populus trichocarpa] 0.794 0.986 0.625 1e-162
449463561589 PREDICTED: WPP domain-interacting tail-a 0.895 0.947 0.547 1e-158
356502676607 PREDICTED: WPP domain-interacting tail-a 0.937 0.962 0.512 1e-154
356498101607 PREDICTED: WPP domain-interacting tail-a 0.918 0.942 0.516 1e-149
145327191582 WPP domain-interacting tail-anchored pro 0.882 0.945 0.518 1e-142
30697764627 WPP domain-interacting tail-anchored pro 0.850 0.845 0.535 1e-142
>gi|255547013|ref|XP_002514564.1| conserved hypothetical protein [Ricinus communis] gi|223546168|gb|EEF47670.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/612 (59%), Positives = 456/612 (74%), Gaps = 19/612 (3%)

Query: 3   MNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVN 62
           M+  ++   C  N E  KGY+ +  LS G   Q+  I+ TM VLTR DLDL +SSEKLVN
Sbjct: 1   MDGYSIAQACTINAESGKGYVDDGNLSGGRGTQD--IESTMEVLTRADLDLGFSSEKLVN 58

Query: 63  LHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVE 122
           LH LLM+LLA  ++LE +  E S ++ATS+E+AL +DLL GILDSELR VE   D I  E
Sbjct: 59  LHGLLMHLLAWDNNLEVMA-EYSYISATSVERALEFDLLSGILDSELRVVENFTDNIQAE 117

Query: 123 IVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182
           IV+  HKISSC+H  ++  I+EK   KL D E SLK++QE   E KMQ+ K QR  S F 
Sbjct: 118 IVDARHKISSCRHSAKLVAIIEK---KLRDSEESLKKTQERFIEAKMQTVKLQRFFSAFK 174

Query: 183 HGN--NDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQN 240
             N  +D + E SANGQL NI   SK   A+Q+RHILRMLEK LARELDLEK +SEL +N
Sbjct: 175 LENWKDDNSTELSANGQLPNIKTNSKRHTAEQKRHILRMLEKCLARELDLEKNLSELRRN 234

Query: 241 EEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS 300
           EEQLKLKLH+TEQVA  MEEAAEVVWGRFLEAEN+AEVLMGISKEM GR QI QFNLNGS
Sbjct: 235 EEQLKLKLHYTEQVALHMEEAAEVVWGRFLEAENAAEVLMGISKEMAGRLQIFQFNLNGS 294

Query: 301 LQRESELKSKLGDFIEQLKAKDMVLQKLES------TKNSEVLTMKEKVKSLEEQLKESE 354
            QRE+ELKS+L   +EQL AKD  L+KLE        K+S+V ++ EKV SLEEQLK SE
Sbjct: 295 FQREAELKSQLHSCLEQLDAKDAALKKLEGKIGEHIAKSSQVPSLMEKVNSLEEQLKRSE 354

Query: 355 IRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414
           +RL++AN   + SQEQ++EM + +E +KES+Y AESRAE+AE KVTQLTDTN ELS+EI+
Sbjct: 355 LRLKHANDFIEESQEQVSEMVSIVEKMKESIYEAESRAETAEAKVTQLTDTNSELSDEIS 414

Query: 415 FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS 474
           FLK + +SNTKKV +LE Q+R+LEIQ+Q +K SSEASQEQQ+MLY+AIWDMETLIEDLKS
Sbjct: 415 FLKSSAESNTKKVSLLEKQVRELEIQVQHSKASSEASQEQQNMLYAAIWDMETLIEDLKS 474

Query: 475 KVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNH 534
           KVSKAESKTE+VE+QCI+LSE N EL  + +F+R K++ LE+SL+RAN  KA SAKE+N 
Sbjct: 475 KVSKAESKTETVEDQCILLSETNMELDKELNFLRSKVEGLEASLDRANNSKATSAKEINL 534

Query: 535 RTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELL 594
            T L+ + VMQL+ +R+ IQ Q++SL  ENKLLVEKL    + +S T +  GD D+K++L
Sbjct: 535 TTTLIKDTVMQLSRERDYIQNQLFSLMKENKLLVEKL----RDASITGFKHGDNDNKKVL 590

Query: 595 INPTNNLAGATV 606
            +  N L+  T 
Sbjct: 591 FSE-NGLSNQTC 601

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738216|emb|CBI27417.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147817708|emb|CAN75587.1| hypothetical protein VITISV_040555 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473487|ref|XP_002267767.2| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111830|ref|XP_002315993.1| predicted protein [Populus trichocarpa] gi|222865033|gb|EEF02164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449463561|ref|XP_004149502.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Cucumis sativus] gi|449481214|ref|XP_004156116.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502676|ref|XP_003520143.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356498101|ref|XP_003517892.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|145327191|ref|NP_001077797.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|334183748|ref|NP_001185353.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|332196738|gb|AEE34859.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|332196739|gb|AEE34860.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30697764|ref|NP_177057.2| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|205830832|sp|A8MQR0.1|WIT2_ARATH RecName: Full=WPP domain-interacting tail-anchored protein 2 gi|332196737|gb|AEE34858.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query623
TAIR|locus:2205470627 WIT2 "AT1G68910" [Arabidopsis 0.853 0.848 0.517 1.8e-133
TAIR|locus:2148057703 WIT1 "AT5G11390" [Arabidopsis 0.881 0.780 0.330 7.1e-61
DICTYBASE|DDB_G0290503 1492 DDB_G0290503 [Dictyostelium di 0.820 0.342 0.198 2.3e-18
UNIPROTKB|F1N8D3 848 Gga.11048 "Uncharacterized pro 0.751 0.551 0.223 9.1e-16
UNIPROTKB|O15083 957 ERC2 "ERC protein 2" [Homo sap 0.775 0.504 0.219 8.1e-15
UNIPROTKB|F1NZF51940 Gga.27138 "Uncharacterized pro 0.715 0.229 0.246 9.6e-15
MGI|MGI:1098749 957 Erc2 "ELKS/RAB6-interacting/CA 0.775 0.504 0.217 1e-14
SGD|S000004300 911 IMH1 "Protein involved in vesi 0.773 0.529 0.207 1.2e-14
UNIPROTKB|P025651940 MYH3 "Myosin-3" [Gallus gallus 0.715 0.229 0.246 1.6e-14
DICTYBASE|DDB_G0286985 1024 zipA "zipper-like domain-conta 0.746 0.454 0.214 1.9e-14
TAIR|locus:2205470 WIT2 "AT1G68910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
 Identities = 289/558 (51%), Positives = 393/558 (70%)

Query:    43 MTVLTRVDLDLAYSSEKXXXXXXXXXXXXARGDDLETLVMENSDVAATSIEKALVYDLLF 102
             + +LT++++D AY+SEK            A  +DLE   M   D +  S EKAL +DLL 
Sbjct:    24 LRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEG--MGTLDSSPASFEKALTFDLLC 81

Query:   103 GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQE 162
             GIL+SE++EV+ +LD +  +IV+  +KISSCKH   +      +E KL +   SLK+S+ 
Sbjct:    82 GILESEVKEVDEVLDVLEAQIVDTSYKISSCKHGNYIV-----IEGKLGESAESLKQSRG 136

Query:   163 HVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNAD-QQRHILRMLE 221
              VSE+ +Q A+ +R L Y  +G ++       N +   +  K  +K +D + ++ LRMLE
Sbjct:   137 QVSEITLQLAQLRRTLHYIRNGTSE-------NEESVELRQKYALKPSDLRHKNALRMLE 189

Query:   222 KSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMG 281
             KSL+REL+LEKK+ E  QNEEQLKLKLH+TE+V+ RMEEA+E +WGRFLEA+NS+EVL G
Sbjct:   190 KSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFIWGRFLEADNSSEVLTG 249

Query:   282 ISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--KNSE---- 335
             ISKE++GR QI+QF+LNGS QRESELKSKL D   QL+AKD+++QKLE T  +NSE    
Sbjct:   250 ISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGTISENSEIVSE 309

Query:   336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESA 395
             VLT++E VKS E++LK +++ L++ NA  Q     L EM+N  ES+KE+L+ AESRAES 
Sbjct:   310 VLTLREYVKSAEQKLKNTDLELKSVNASKQEILVHLAEMENANESVKENLFEAESRAESG 369

Query:   396 EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQ 455
             E K+ +L   NLEL+EE+NFLK  +D  TKKV  LE Q+R+LE+Q+Q +KVSSEA+QEQQ
Sbjct:   370 EAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEVQVQNSKVSSEANQEQQ 429

Query:   456 SMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515
             +MLYSAIWDMETLIEDLKSK SKAES+TE+VEEQCIVLS  N EL    SF+R K K LE
Sbjct:   430 NMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSELNKDVSFLRQKAKSLE 489

Query:   516 SSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575
             + L+ AN EK   A+E+  R K++M+M++QL+++RE IQ+Q+YSL  ENK+L  ++    
Sbjct:   490 AMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYSLAKENKIL--RVN--- 544

Query:   576 KSSSATMYNAGDTDDKEL 593
             + S+    N     DKEL
Sbjct:   545 QCSNTYQRNGSYAGDKEL 562
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2148057 WIT1 "AT5G11390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8D3 Gga.11048 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O15083 ERC2 "ERC protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZF5 Gga.27138 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1098749 Erc2 "ELKS/RAB6-interacting/CAST family member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
SGD|S000004300 IMH1 "Protein involved in vesicular transport" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|P02565 MYH3 "Myosin-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8MQR0WIT2_ARATHNo assigned EC number0.53570.85070.8452yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query623
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-10
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-05
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 4e-05
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 7e-05
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 1e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-04
pfam07888546 pfam07888, CALCOCO1, Calcium binding and coiled-co 0.003
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 0.003
pfam07888 546 pfam07888, CALCOCO1, Calcium binding and coiled-co 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 62.8 bits (153), Expect = 4e-10
 Identities = 70/356 (19%), Positives = 163/356 (45%), Gaps = 26/356 (7%)

Query: 223  SLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGI 282
            SLA++ +L++   EL + E QL+      + +   +              E+  E L   
Sbjct: 662  SLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSL-----------EDLLEELRRQ 710

Query: 283  SKEMLGRFQIVQFNLNGSLQRESELKSKLGDF---IEQLKAKDMVLQKLESTKNSEVLTM 339
             +E+  + + ++  L    +   +L+S+L +    +E+L+ +   LQ+       E+ ++
Sbjct: 711  LEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770

Query: 340  KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399
            +E +  L+E+++E E + Q      +  +E+L E +  +++L+  L   E R E  E+++
Sbjct: 771  EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 400  TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLY 459
             +L +   EL E+++ L+   +   K++  L+ +L +LE + ++ +   +  +E++  L 
Sbjct: 831  EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890

Query: 460  SAIWDMETLIEDLKSKVSKAESKTESVEEQC----IVLSEDNFELKNKQSFM-----RDK 510
              + ++E+ + +LK ++ K   + E +E +     + L E   EL+ +           +
Sbjct: 891  EELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE 950

Query: 511  IKILESSLNR---ANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 563
            I+ LE  +      N+      +EV  R + +      L   +E + + +  L  E
Sbjct: 951  IERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006

Length = 1163
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 623
KOG1003205 consensus Actin filament-coating protein tropomyos 100.0
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 99.96
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 99.21
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 99.18
PRK02224 880 chromosome segregation protein; Provisional 99.01
PRK02224880 chromosome segregation protein; Provisional 98.97
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.74
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.7
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.68
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.65
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 98.63
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.6
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.37
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.35
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.33
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.26
PRK03918 880 chromosome segregation protein; Provisional 98.16
KOG0971 1243 consensus Microtubule-associated protein dynactin 98.16
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 98.1
PRK04863 1486 mukB cell division protein MukB; Provisional 98.04
PHA02562562 46 endonuclease subunit; Provisional 98.01
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 97.88
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 97.83
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.81
PRK03918 880 chromosome segregation protein; Provisional 97.81
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 97.8
KOG1003205 consensus Actin filament-coating protein tropomyos 97.8
PF05701522 WEMBL: Weak chloroplast movement under blue light; 97.7
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.59
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 97.57
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.47
KOG0996 1293 consensus Structural maintenance of chromosome pro 97.41
PRK01156 895 chromosome segregation protein; Provisional 97.38
PRK04778569 septation ring formation regulator EzrA; Provision 97.26
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 97.17
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 97.1
PRK11637428 AmiB activator; Provisional 97.09
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.08
PF00038312 Filament: Intermediate filament protein; InterPro: 96.98
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 96.92
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 96.83
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.81
KOG0933 1174 consensus Structural maintenance of chromosome pro 96.77
PRK11637 428 AmiB activator; Provisional 96.75
KOG0933 1174 consensus Structural maintenance of chromosome pro 96.66
PRK01156895 chromosome segregation protein; Provisional 96.65
PF05701522 WEMBL: Weak chloroplast movement under blue light; 96.62
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 96.57
PRK04863 1486 mukB cell division protein MukB; Provisional 96.46
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.44
PHA02562562 46 endonuclease subunit; Provisional 96.38
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 96.33
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 96.3
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.13
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 96.12
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 96.08
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 96.0
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.77
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 95.6
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 95.6
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 95.32
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 95.23
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 94.86
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 94.79
PF12777344 MT: Microtubule-binding stalk of dynein motor; Int 94.68
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 94.45
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 94.09
KOG0018 1141 consensus Structural maintenance of chromosome pro 93.98
KOG0963 629 consensus Transcription factor/CCAAT displacement 93.85
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 93.74
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 93.67
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 93.5
PLN02939 977 transferase, transferring glycosyl groups 93.47
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 93.44
PRK04778569 septation ring formation regulator EzrA; Provision 93.43
PF14662193 CCDC155: Coiled-coil region of CCDC155 93.29
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 93.27
PF05911769 DUF869: Plant protein of unknown function (DUF869) 93.17
PF05010207 TACC: Transforming acidic coiled-coil-containing p 93.14
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 93.1
PF05483 786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 92.96
PRK11281 1113 hypothetical protein; Provisional 92.89
PRK09039343 hypothetical protein; Validated 92.88
PF00038312 Filament: Intermediate filament protein; InterPro: 92.62
PF14073178 Cep57_CLD: Centrosome localisation domain of Cep57 92.2
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 92.1
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 92.07
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 92.01
PRK10929 1109 putative mechanosensitive channel protein; Provisi 91.57
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 91.41
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 91.35
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 91.34
TIGR00634 563 recN DNA repair protein RecN. All proteins in this 91.33
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 91.25
PRK09039343 hypothetical protein; Validated 91.24
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 91.21
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 91.05
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 90.58
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 90.42
KOG0018 1141 consensus Structural maintenance of chromosome pro 90.35
PF14662193 CCDC155: Coiled-coil region of CCDC155 90.09
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 89.48
TIGR01843 423 type_I_hlyD type I secretion membrane fusion prote 89.44
COG5185622 HEC1 Protein involved in chromosome segregation, i 89.34
PF13851201 GAS: Growth-arrest specific micro-tubule binding 88.64
KOG0963 629 consensus Transcription factor/CCAAT displacement 88.1
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 87.34
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 87.2
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 87.02
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 86.93
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 86.9
TIGR02977219 phageshock_pspA phage shock protein A. Members of 86.55
PF15397258 DUF4618: Domain of unknown function (DUF4618) 86.35
KOG4593 716 consensus Mitotic checkpoint protein MAD1 [Cell cy 86.32
PF05911769 DUF869: Plant protein of unknown function (DUF869) 86.27
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 85.71
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 85.7
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 84.86
KOG0249 916 consensus LAR-interacting protein and related prot 84.84
PRK10698222 phage shock protein PspA; Provisional 84.35
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 84.22
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 84.13
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 83.79
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 83.76
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 83.62
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 83.52
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 83.33
PLN02939 977 transferase, transferring glycosyl groups 82.99
PLN031881320 kinesin-12 family protein; Provisional 82.89
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 82.73
KOG0979 1072 consensus Structural maintenance of chromosome pro 82.43
COG0419 908 SbcC ATPase involved in DNA repair [DNA replicatio 81.59
PRK10869553 recombination and repair protein; Provisional 81.29
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 80.53
KOG0249 916 consensus LAR-interacting protein and related prot 80.34
PRK10884206 SH3 domain-containing protein; Provisional 80.25
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-34  Score=276.39  Aligned_cols=188  Identities=18%  Similarity=0.260  Sum_probs=184.8

Q ss_pred             hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 006984          367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV  446 (623)
Q Consensus       367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~a  446 (623)
                      ++++|++++|+|++|++++++|++|+.+|.+|+.+++++|+|.+|++|+|++|+..+++||+.+|.||++++       +
T Consensus         2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk-------~   74 (205)
T KOG1003|consen    2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK-------H   74 (205)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------H
Confidence            467899999999999999999999999999999999999999999999999999999999999999999988       9


Q ss_pred             hhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 006984          447 SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA  526 (623)
Q Consensus       447 saEas~eqQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~  526 (623)
                      +|+++++    ||++|+|+++|||   ++|++++.||+.+|++|.       +|.++++++++++++|+++.++++++.+
T Consensus        75 iaE~adr----K~eEVarkL~iiE---~dLE~~eeraE~~Es~~~-------eLeEe~~~~~~nlk~l~~~ee~~~q~~d  140 (205)
T KOG1003|consen   75 IAEKADR----KYEEVARKLVIIE---GELERAEERAEAAESQSE-------ELEEDLRILDSNLKSLSAKEEKLEQKEE  140 (205)
T ss_pred             HHHHHHH----HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHH-------HHHHHHHHhHhHHHHHHHHHHHHhhhHH
Confidence            9999999    9999999999999   999999999999999999       9999999999999999999999999999


Q ss_pred             hh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006984          527 AS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG  575 (623)
Q Consensus       527 ~t----------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~  575 (623)
                      .|          +|++++|++|++|.|++|+++||+|++.+...+.+|+.+...||+|-
T Consensus       141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~  199 (205)
T KOG1003|consen  141 KYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETL  199 (205)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            99          99999999999999999999999999999999999999999999984

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57 Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10869 recombination and repair protein; Provisional Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query623
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 79.1 bits (195), Expect = 2e-15
 Identities = 55/307 (17%), Positives = 125/307 (40%), Gaps = 10/307 (3%)

Query: 284  KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKV 343
             E L R +  Q      L+   +  ++L +    L+ K     +L +      + +  K 
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922

Query: 344  KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403
            + LEE L E E R++      Q  Q +  +M   +  L+E L   E+  +  + +     
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 404  DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIW 463
                ++ ++I  ++  N+  TK+  +LE ++ DL   L + +  ++   + ++   S I 
Sbjct: 983  GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042

Query: 464  DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523
            ++E  ++  +    + E     +E +   L E   EL+ + + ++ ++   E  L  A  
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

Query: 524  EKAASAKEVNHRTKLMMEMVMQLA----------TQRELIQKQVYSLTSENKLLVEKLQY 573
                   + N+  K + E+   ++            R   +KQ   L+ E + L  +L+ 
Sbjct: 1103 RLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162

Query: 574  SGKSSSA 580
            +  +++ 
Sbjct: 1163 TLDTTAT 1169
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query623
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 99.91
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 99.86
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.86
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.68
2z5i_A52 TM, general control protein GCN4 and tropomyosin a 98.57
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 98.36
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.31
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 98.26
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.22
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 98.1
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 98.03
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 97.59
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 97.45
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 97.28
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 96.99
3mud_A175 DNA repair protein XRCC4, tropomyosin alpha-1 CHA; 96.74
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.54
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.16
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 96.13
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.65
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.59
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 94.92
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 92.87
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 92.51
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 91.96
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 91.52
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 91.36
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 91.09
3mtu_E77 Head morphogenesis protein, tropomyosin alpha-1 C; 91.01
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 88.0
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 87.4
3bas_A89 Myosin heavy chain, striated muscle/general contro 81.75
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
Probab=99.91  E-value=3.6e-25  Score=206.10  Aligned_cols=138  Identities=22%  Similarity=0.321  Sum_probs=125.2

Q ss_pred             HHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHH
Q 006984          374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE  453 (623)
Q Consensus       374 LerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEk~~~LE~QLKEa~~QLqhA~asaEas~e  453 (623)
                      |+|+|++|++++.+|++|+.+|..||..+++++++++|.+++|++|+..+++|++.||.||++++       .+|+++++
T Consensus         1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak-------~~aeeadr   73 (147)
T 2b9c_A            1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK-------HIAEDADR   73 (147)
T ss_dssp             ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999988       99999999


Q ss_pred             HHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHH
Q 006984          454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEV  532 (623)
Q Consensus       454 qQ~mky~ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKea  532 (623)
                          +|++++|+++|++   ++|.||+.|++.+|+||.       +|+++|+.++++|||||++..+|+++++.|-..|
T Consensus        74 ----KyeE~~RKl~~~E---~dLeraeeRae~aE~k~~-------eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I  138 (147)
T 2b9c_A           74 ----KYEEVARKLVIIE---SDLERAEERAELSEGKCA-------ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV  138 (147)
T ss_dssp             ----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence                9999999999999   999999999999999999       9999999999999999999999999999996554
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00