Citrus Sinensis ID: 006986

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620--
MAYMCADSGNLMAVAQQVIKQKQEQEKQQQQQQQQQHQQNSDQPQQQFFGLNPYSLNPWTSSSQHSISVSNSPNFGYGFTGPGFPDPLDTGESGFPFPQIDHHSTSGGFRFSDFGGGPGGEFDSDEWMESLMNTAHSTDSSNLPPACDAWQNNASDFGLYATDPFTSCPSQLGSPTSELNRVVFADSQKTILPAWPPSPPPPLVPPESAVKELAKQVSPSPSPSPSPSRVPPPNDAVGASTSTGFAEAELAQPLTKALIDCACLVESEPDKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQRAEKSITTLEANCEDCILSFKTLNDACPYSKFAYLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWR
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEEEcccEEEEEEccccEEEEEccc
ccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHcccccccccccccccccEcccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHccccEEEEcHHccHHHccHHHcccccccEEEEEHHHHHHccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHEEEccccccHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEEEccccEEEEcccccEEEEEEccc
maymcadsgNLMAVAQQVIKQKQEQEKQQQQQQQQQHqqnsdqpqqqffglnpyslnpwtsssqhsisvsnspnfgygftgpgfpdpldtgesgfpfpqidhhstsggfrfsdfgggpggefdsdeWMESLMNTahstdssnlppacdawqnnasdfglyatdpftscpsqlgsptselnrvvfadsqktilpawppspppplvppesAVKELAkqvspspspspspsrvpppndavgaststgfaEAELAQPLTKALIDCaclvesepDKAVKSLVRLRgsvcahgnpteRVAYYFTEALYKRLTQRAEKSITTLEANCEDCILSFktlndacpyskfaYLTANQAILEATenashihivDFGIVQGIQWSFLLQALanrptgkpvkvrisgipapalgkspaaslLATGDRLREFAGslslnlefepilipirklrassfrvdpneALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAEYEANLNRTGFLARFKNALKYYTAVFEslepnmttdsdeRFQVERQILGprianllapekqgakreRVEDIENWRIFmensdfegipfshyALSQAEILLWnynysplftlnqshdnlLTLSWKKVPLLTVSSWR
MAYMCADSGNLMAVAQQVIKQKQEQEKQQQQQQQQQHQQNSDQPQQQFFGLNPYSLNPWTSSSQHSISVSNSPNFGYGFTGPGFPDPLDTGESGFPFPQIDHHSTSGGFRFSDFGGGPGGEFDSDEWMESLMNTAHSTDSSNLPPACDAWQNNASDFGLYATDPFTSCPSQLGSPTSELNRVVFADSQKTILPAWPPSPPPPLVPPESAVKELAKQVspspspspspsrVPPPNDAVGASTSTGFAEAELAQPLTKALIDCACLVESEPDKAVKSLVRlrgsvcahgnpterVAYYFTEALYKRLTQRAEKSITTLEANCEDCILSFKTLNDACPYSKFAYLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISgipapalgkspaASLLATGDRLREFAGslslnlefepiLIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGprianllapekqgakrerVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTlswkkvplltvsswr
MAYMCADSGNLMAVAqqvikqkqeqekqqqqqqqqqhqqnsdqpqqqFFGLNPYSLNPWTsssqhsisvsnsPNFGYGFTGPGFPDPLDTGESGFPFPQIDHHstsggfrfsdfgggpggefdsdEWMESLMNTAHSTDSSNLPPACDAWQNNASDFGLYATDPFTSCPSQLGSPTSELNRVVFADSQKTIlpawppspppplvppesavKELAKQvspspspspspsrvpppNDAVGASTSTGFAEAELAQPLTKALIDCACLVESEPDKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQRAEKSITTLEANCEDCILSFKTLNDACPYSKFAYLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWR
****************************************************************************YGF*******************************************************************CDAWQNNASDFGLYATDPFT****************VF*****************************************************************LAQPLTKALIDCACLVESEPDKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQRAEKSITTLEANCEDCILSFKTLNDACPYSKFAYLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAP*******ASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAEYEANLNRTGFLARFKNALKYYTAVFESL*************VERQILGPRIANLL***********VEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTV****
*AYMCADSGNLMAVAQQVI************************************************************************************************************************************NNASDFGLY***********************************************************************************************KALIDCACLVESEPDKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQRA***********EDCILSFKTLNDACPYSKFAYLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWR
MAYMCADSGNLMAVAQQ***************************QQQFFGLNPYSLNPW********SVSNSPNFGYGFTGPGFPDPLDTGESGFPFPQIDHHSTSGGFRFSDFGGGPGGEFDSDEWMESLMNT********LPPACDAWQNNASDFGLYATDPFTSCPSQLGSPTSELNRVVFADSQKTILPAWPPSPPPPLVPPESAV************************DAVGASTSTGFAEAELAQPLTKALIDCACLVESEPDKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQRAEKSITTLEANCEDCILSFKTLNDACPYSKFAYLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWR
*AYMCADSGNLMAVAQQVIKQKQEQEKQ***********NSDQPQQQFFGLNPYSLNPWTSSSQHSISVSNSPNFGYGFTGPGFPDPLDTGESGFPFPQIDHHSTSGGFRFSDFGGGPGGEFDSDEWMESLMNTAHSTDSSNLPPACDAWQNNASDFGLYATDPFTSC**************************************************************************TGFAEAELAQPLTKALIDCACLVESEPDKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQRAEKSITTLEANCEDCILSFKTLNDACPYSKFAYLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWR
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MAYMCADSGNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSDQPQQQFFGLNPYSLNPWTSSSQHSISVSNSPNFGYGFTGPGFPDPLDTGESGFPFPQIDHHSTSGGFRFSDFGGGPGGEFDSDEWMESLMNTAHSTDSSNLPPACDAWQNNASDFGLYATDPFTSCPSQLGSPTSELNRVVFADSQKTILPAWPPSPPPPLVPPESAVKELAKQVSPSPSPSPSPSRVPPPNDAVGASTSTGFAEAELAQPLTKALIDCACLVESEPDKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQRAEKSITTLEANCEDCILSFKTLNDACPYSKFAYLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query622 2.2.26 [Sep-21-2011]
Q9FL03584 Scarecrow-like protein 4 yes no 0.922 0.982 0.517 1e-160
Q9SCR0542 Scarecrow-like protein 7 no no 0.863 0.990 0.472 1e-135
Q8GVE1544 Chitin-inducible gibberel no no 0.585 0.669 0.372 1e-55
Q69VG1571 Chitin-inducible gibberel no no 0.581 0.633 0.343 2e-51
Q8H125597 Scarecrow-like protein 5 no no 0.578 0.603 0.363 4e-50
Q9M0M5529 Scarecrow-like protein 13 no no 0.583 0.686 0.336 2e-48
Q8GXW1547 DELLA protein RGL2 OS=Ara no no 0.578 0.658 0.352 6e-48
Q9SDQ3593 Scarecrow-like protein 1 no no 0.618 0.649 0.312 8e-47
Q9LDL7490 Scarecrow-like transcript no no 0.593 0.753 0.331 3e-45
Q2Z2E9783 Protein SCARECROW OS=Ipom N/A no 0.556 0.441 0.362 4e-45
>sp|Q9FL03|SCL4_ARATH Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=2 SV=1 Back     alignment and function desciption
 Score =  565 bits (1456), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 327/632 (51%), Positives = 425/632 (67%), Gaps = 58/632 (9%)

Query: 1   MAYMCADSGNLMAVAQQVIKQKQEQEKQQQQQQQQQHQQNSDQPQQQFFGLNPYSLNPWT 60
           MAYMC DSGNLMA+AQQVIKQKQ+QE+QQQQ  Q            Q FG+NP SLNPW 
Sbjct: 1   MAYMCTDSGNLMAIAQQVIKQKQQQEQQQQQHHQDH----------QIFGINPLSLNPWP 50

Query: 61  SSSQHSISVSNSPNFGYGFTGPGFPDPL------DTGESGFPFPQIDHH---STSGGFRF 111
           ++S            G+G +G  FPDP       D+ + GFPFP +DHH   +T GGFR 
Sbjct: 51  NTS-----------LGFGLSGSAFPDPFQVTGGGDSNDPGFPFPNLDHHHATTTGGGFRL 99

Query: 112 SDFGGGPGG-EFDSDEWMESLMNTAHSTDSSNLPPACDAWQNNASDFGLYATDPFTSCPS 170
           SDFGGG GG EF+SDEWME+L++   S       P CD W +N  D+ +Y  DPF + PS
Sbjct: 100 SDFGGGTGGGEFESDEWMETLISGGDSVADG---PDCDTWHDNP-DYVIYGPDPFDTYPS 155

Query: 171 QLGSPTSELNRVVFADSQKTILPAWPPSPPPPLVPPESAVKELAKQVSPSPSPSPSPSRV 230
           +L    S+LNRV+   S                      +   +  +S  P    SP++ 
Sbjct: 156 RLSVQPSDLNRVIDTSSPLP----------------PPTLWPPSSPLSIPPLTHESPTKE 199

Query: 231 PPPNDAVGASTSTGFAEAELAQPLTKALIDCACLVESEPDKAVKSLVRLRGSVCAHGNPT 290
            P       +  +   + +L  PL KA+ DCA + +S+P++A K+L+++R SV   G+PT
Sbjct: 200 DP------ETNDSEDDDFDLEPPLLKAIYDCARISDSDPNEASKTLLQIRESVSELGDPT 253

Query: 291 ERVAYYFTEALYKRLTQRAEKSITTLEANCEDCILSFKTLNDACPYSKFAYLTANQAILE 350
           ERVA+YFTEAL  RL+  +  + ++  ++ ED ILS+KTLNDACPYSKFA+LTANQAILE
Sbjct: 254 ERVAFYFTEALSNRLSPNSPATSSS-SSSTEDLILSYKTLNDACPYSKFAHLTANQAILE 312

Query: 351 ATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLAT 410
           ATE ++ IHIVDFGIVQGIQW  LLQALA R +GKP ++R+SGIPAP+LG+SP  SL+AT
Sbjct: 313 ATEKSNKIHIVDFGIVQGIQWPALLQALATRTSGKPTQIRVSGIPAPSLGESPEPSLIAT 372

Query: 411 GDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVE 470
           G+RLR+FA  L LN +F PIL PI  L  SSFRVDP+E L VNFMLQL  LLD+    V+
Sbjct: 373 GNRLRDFAKVLDLNFDFIPILTPIHLLNGSSFRVDPDEVLAVNFMLQLYKLLDETPTIVD 432

Query: 471 NALQMAKSLNPIVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQV 530
            AL++AKSLNP VVTL EYE +LNR GF  R KNAL++Y+AVFESLEPN+  DS+ER +V
Sbjct: 433 TALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRV 492

Query: 531 ERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNY 590
           ER++ G RI+ L+ PEK G  RER+E+ E WR+ MEN+ FE +  S+YA+SQA+ILLWNY
Sbjct: 493 ERELFGRRISGLIGPEKTGIHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNY 552

Query: 591 NYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWR 622
           NYS L+++ +S    ++L+W  +PLLT+SSWR
Sbjct: 553 NYSNLYSIVESKPGFISLAWNDLPLLTLSSWR 584
Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SCR0|SCL7_ARATH Scarecrow-like protein 7 OS=Arabidopsis thaliana GN=SCL7 PE=2 SV=1 Back     alignment and function description
>sp|Q8GVE1|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1 Back     alignment and function description
>sp|Q69VG1|CIGR1_ORYSJ Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1 Back     alignment and function description
>sp|Q8H125|SCL5_ARATH Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9M0M5|SCL13_ARATH Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2 Back     alignment and function description
>sp|Q8GXW1|RGL2_ARATH DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2 Back     alignment and function description
>sp|Q9SDQ3|SCL1_ARATH Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LDL7|PAT1_ARATH Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1 Back     alignment and function description
>sp|Q2Z2E9|SCR_IPONI Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query622
255561178608 Chitin-inducible gibberellin-responsive 0.950 0.972 0.594 0.0
225430774616 PREDICTED: scarecrow-like protein 4-like 0.967 0.977 0.588 0.0
224134308589 GRAS family transcription factor [Populu 0.922 0.974 0.568 1e-179
449451515609 PREDICTED: scarecrow-like protein 4-like 0.963 0.983 0.544 1e-175
297735167584 unnamed protein product [Vitis vinifera] 0.860 0.916 0.583 1e-164
147801801 893 hypothetical protein VITISV_023717 [Viti 0.839 0.584 0.577 1e-162
302399049485 SCL domain class transcription factor [M 0.770 0.987 0.604 1e-161
312281665601 unnamed protein product [Thellungiella h 0.940 0.973 0.517 1e-160
15240076584 scarecrow-like protein 4 [Arabidopsis th 0.922 0.982 0.517 1e-158
17064924573 SCARECROW gene regulator [Arabidopsis th 0.863 0.937 0.509 1e-153
>gi|255561178|ref|XP_002521601.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] gi|223539279|gb|EEF40872.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/639 (59%), Positives = 462/639 (72%), Gaps = 48/639 (7%)

Query: 1   MAYMCADSGNLMAVAQQVIKQKQEQEKQQQQQQQQQHQQNSDQPQQQFFGLNPYSLNPWT 60
           MAYMCADSGNLMA+AQQVIKQKQ+QE+QQQ         ++ Q QQ    L  + L+PW 
Sbjct: 1   MAYMCADSGNLMAIAQQVIKQKQQQEQQQQHHHHHHSNSSNQQQQQLLGSLTSFPLSPWP 60

Query: 61  SSSQHSISVSNSPNFGY-GFT-GPGFPDPL------DTGESGFPFPQIDHHSTSGGFRFS 112
           ++      +S +PN GY G T G  FPDP       DTGE GF FPQIDHHS   GFRFS
Sbjct: 61  AT------MSTNPNLGYSGLTSGAAFPDPFQVPGGGDTGEPGFQFPQIDHHSI--GFRFS 112

Query: 113 DFGGGPGGEFDSDEWMESLMNTAHSTDSSNLPPACDAWQNNASDFGLYATDPFTSCPSQL 172
                   EFDSDEWM+SLM    STDSSNLP ACDAWQN+A DF LY  DPF +CP++L
Sbjct: 113 --------EFDSDEWMDSLMGGGDSTDSSNLPSACDAWQNHA-DFSLYGPDPFATCPTRL 163

Query: 173 G---SPTSELNRVVFADSQKTI-----LPAWPPSPPPPLVPPESAVKELAKQVSPSPSPS 224
               S  S+LNRV++ ++QKT+     +  W PSPPPP  PP++ VK+  K  +P     
Sbjct: 164 SVGCSSPSDLNRVIYTETQKTLANPLQVSTWSPSPPPPPPPPQTVVKD-TKPANP----- 217

Query: 225 PSPSRVPPPNDAVGASTSTGFAEAELAQPLTKALIDCACLVESEPDKAVKSLVRLRGSVC 284
                +P   +AVG S+S+   E+    P  KAL++CA L ESEP++AVKSL++LR SVC
Sbjct: 218 -----LPLKTEAVGVSSSSPDIES---APALKALLECARLAESEPERAVKSLIKLRESVC 269

Query: 285 AHGNPTERVAYYFTEALYKRLTQRAEKSITTLEANCE-DCILSFKTLNDACPYSKFAYLT 343
            HG+PTERVA+YFTEALY RL  +AEKS+   E + E D  LS+K LNDACPYSKFA+LT
Sbjct: 270 EHGDPTERVAFYFTEALYSRLCLQAEKSLAMFETSSEEDFTLSYKALNDACPYSKFAHLT 329

Query: 344 ANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSP 403
           ANQAILEATE AS IHIVDFGIVQG+QW+ LLQALA R  G+P+ +RISGIPAP LGKSP
Sbjct: 330 ANQAILEATEGASKIHIVDFGIVQGVQWAALLQALATRSAGRPLSIRISGIPAPVLGKSP 389

Query: 404 AASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLD 463
           AASLLATG+RL +FA  L LN EF PIL PI++L  S+FRVDP+E L VNFMLQL +LLD
Sbjct: 390 AASLLATGNRLGDFAKLLDLNFEFVPILTPIQELNESNFRVDPDEVLAVNFMLQLYNLLD 449

Query: 464 DNRLAVENALQMAKSLNPIVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTD 523
           +   AVE AL+MAKSLNP +VTL EYEA+LN+ G+  RFKNAL+YY+AVFESLEPN++ D
Sbjct: 450 ETYGAVETALKMAKSLNPEIVTLGEYEASLNQIGYENRFKNALRYYSAVFESLEPNLSRD 509

Query: 524 SDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQA 583
           S ER QVER +LG RIA  + PE+ G +RER+ED E WRI ME+  FE +  SHYA+SQA
Sbjct: 510 STERLQVERLLLGRRIAGAVGPEEAGTRRERIEDKEQWRILMESCGFESVALSHYAMSQA 569

Query: 584 EILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWR 622
           +ILLWNYNYS L++L +S    L+L+W +VPLLTVSSWR
Sbjct: 570 KILLWNYNYSSLYSLVESQPGFLSLAWNEVPLLTVSSWR 608

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430774|ref|XP_002267140.1| PREDICTED: scarecrow-like protein 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134308|ref|XP_002327806.1| GRAS family transcription factor [Populus trichocarpa] gi|222836891|gb|EEE75284.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449451515|ref|XP_004143507.1| PREDICTED: scarecrow-like protein 4-like [Cucumis sativus] gi|449527477|ref|XP_004170737.1| PREDICTED: scarecrow-like protein 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297735167|emb|CBI17529.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147801801|emb|CAN74537.1| hypothetical protein VITISV_023717 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302399049|gb|ADL36819.1| SCL domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|312281665|dbj|BAJ33698.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|15240076|ref|NP_201478.1| scarecrow-like protein 4 [Arabidopsis thaliana] gi|75171370|sp|Q9FL03.1|SCL4_ARATH RecName: Full=Scarecrow-like protein 4; Short=AtSCL4; AltName: Full=GRAS family protein 32; Short=AtGRAS-32 gi|9758127|dbj|BAB08619.1| SCARECROW gene regulator [Arabidopsis thaliana] gi|332010878|gb|AED98261.1| scarecrow-like protein 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|17064924|gb|AAL32616.1| SCARECROW gene regulator [Arabidopsis thaliana] gi|27311949|gb|AAO00940.1| SCARECROW gene regulator [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query622
TAIR|locus:2174974584 AT5G66770 "AT5G66770" [Arabido 0.599 0.638 0.601 7.1e-141
TAIR|locus:2101694542 AT3G50650 "AT3G50650" [Arabido 0.590 0.677 0.560 1.9e-120
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.604 0.629 0.356 1.8e-52
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.577 0.656 0.353 4.2e-51
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.593 0.753 0.336 2e-47
TAIR|locus:2020487445 LAS "AT1G55580" [Arabidopsis t 0.469 0.656 0.359 2.3e-46
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.615 0.645 0.314 1.3e-45
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.602 0.717 0.338 3.4e-45
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.570 0.859 0.333 1.7e-43
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.565 0.539 0.359 2.8e-43
TAIR|locus:2174974 AT5G66770 "AT5G66770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1167 (415.9 bits), Expect = 7.1e-141, Sum P(2) = 7.1e-141
 Identities = 225/374 (60%), Positives = 292/374 (78%)

Query:   249 ELAQPLTKALIDCACLVESEPDKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQR 308
             +L  PL KA+ DCA + +S+P++A K+L+++R SV   G+PTERVA+YFTEAL  RL+  
Sbjct:   212 DLEPPLLKAIYDCARISDSDPNEASKTLLQIRESVSELGDPTERVAFYFTEALSNRLSPN 271

Query:   309 AEKSITTLEANCEDCILSFKTLNDACPYSKFAYLTANQAILEATENASHIHIVDFGIVQG 368
             +  + ++  ++ ED ILS+KTLNDACPYSKFA+LTANQAILEATE ++ IHIVDFGIVQG
Sbjct:   272 SPATSSS-SSSTEDLILSYKTLNDACPYSKFAHLTANQAILEATEKSNKIHIVDFGIVQG 330

Query:   369 IQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFE 428
             IQW  LLQALA R +GKP ++R+SGIPAP+LG+SP  SL+ATG+RLR+FA  L LN +F 
Sbjct:   331 IQWPALLQALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDFI 390

Query:   429 PILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPIVVTLAE 488
             PIL PI  L  SSFRVDP+E L VNFMLQL  LLD+    V+ AL++AKSLNP VVTL E
Sbjct:   391 PILTPIHLLNGSSFRVDPDEVLAVNFMLQLYKLLDETPTIVDTALRLAKSLNPRVVTLGE 450

Query:   489 YEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQ 548
             YE +LNR GF  R KNAL++Y+AVFESLEPN+  DS+ER +VER++ G RI+ L+ PEK 
Sbjct:   451 YEVSLNRVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRVERELFGRRISGLIGPEKT 510

Query:   549 GAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTL 608
             G  RER+E+ E WR+ MEN+ FE +  S+YA+SQA+ILLWNYNYS L+++ +S    ++L
Sbjct:   511 GIHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNYSNLYSIVESKPGFISL 570

Query:   609 SWKKVPLLTVSSWR 622
             +W  +PLLT+SSWR
Sbjct:   571 AWNDLPLLTLSSWR 584
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2101694 AT3G50650 "AT3G50650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020487 LAS "AT1G55580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FL03SCL4_ARATHNo assigned EC number0.51740.92280.9828yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-117
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  354 bits (911), Expect = e-117
 Identities = 156/380 (41%), Positives = 218/380 (57%), Gaps = 19/380 (5%)

Query: 254 LTKALIDCACLVESEPDKAVKSLV-RLRGSVCAHGNPTERVAYYFTEALYKRLT---QRA 309
           L   L+ CA  V S      ++++ RL       G+P +R+A YFTEAL  RL       
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 310 EKSITTLEANCE---DCILSFKTLNDACPYSKFAYLTANQAILEATENASHIHIVDFGIV 366
             ++    +      + + ++K   +  PY KF + TANQAILEA E    +HI+DF I 
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 367 QGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLE 426
           QG+QW  L+QALA+RP G P  +RI+GI +P    S A  L  TGDRL +FA SL +  E
Sbjct: 121 QGLQWPSLIQALASRPGGPPH-LRITGIGSPQ--FSSAEELEETGDRLAQFADSLGVPFE 177

Query: 427 FEPILI-PIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVEN--ALQMAKSLNPIV 483
           F P++   +  L      V P EAL VN +  L+ LLD+  +++E+   L++ KSLNP V
Sbjct: 178 FNPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDE-SVSLESPTFLRLVKSLNPKV 236

Query: 484 VTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLL 543
           VTL E EAN N   FLARF  AL YY+A+F+SLE  +  DS+ER +VER++LG  I N++
Sbjct: 237 VTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVV 296

Query: 544 APEKQGAKR-ERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSH 602
           A E  GA+R ER E    WR  M  + F  +P S +A+ QA++LL  Y Y   + + +  
Sbjct: 297 ACE--GAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLY-YVDGYRV-EED 352

Query: 603 DNLLTLSWKKVPLLTVSSWR 622
           +  L L WK  PL+  S+WR
Sbjct: 353 NGSLVLGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 622
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 96.82
TIGR00740239 methyltransferase, putative. A simple BLAST search 95.43
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.28
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 94.82
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 94.19
PLN02233261 ubiquinone biosynthesis methyltransferase 93.16
PRK06202232 hypothetical protein; Provisional 91.21
KOG4407 1973 consensus Predicted Rho GTPase-activating protein 89.82
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 89.22
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 89.03
PLN02244340 tocopherol O-methyltransferase 88.08
PF11498468 Activator_LAG-3: Transcriptional activator LAG-3; 87.0
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 86.77
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 86.39
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 86.38
PLN02336475 phosphoethanolamine N-methyltransferase 85.64
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 84.89
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 84.6
TIGR03438301 probable methyltransferase. This model represents 84.25
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 83.33
PRK12335287 tellurite resistance protein TehB; Provisional 81.3
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 81.22
KOG4407 1973 consensus Predicted Rho GTPase-activating protein 80.52
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-105  Score=859.63  Aligned_cols=363  Identities=42%  Similarity=0.696  Sum_probs=338.7

Q ss_pred             HHHHHHHHHHHHhcCc-HHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHhhcccccccccc---cc---ChHHHHHH
Q 006986          254 LTKALIDCACLVESEP-DKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQRAEKSITTL---EA---NCEDCILS  326 (622)
Q Consensus       254 L~~lLl~CA~Av~~~~-~~A~~~L~~L~~~aS~~Gd~~qRlA~yFaeAL~~Rl~~~~~~~~~~~---~~---s~~~~~~a  326 (622)
                      |++||++||+||+.++ ..|..+|.+|++++|++|||+||||+||++||.+||.++++..+...   ..   ...+.+.+
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            6899999999999866 56778899999999999999999999999999999999776654221   11   24668899


Q ss_pred             HHHHHhcCCccchhHHHHHHHHHHHhhcCCeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHH
Q 006986          327 FKTLNDACPYSKFAYLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAAS  406 (622)
Q Consensus       327 ~~~l~~~sP~~kfah~tANqAILEA~~g~~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~  406 (622)
                      |+.||+.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++||| +||||||+.|..+  +...
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp-~LrIT~i~~~~~~--~~~~  157 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPP-SLRITGIGPPNSG--SADE  157 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCC-eEEEEeccCCCCC--cHHH
Confidence            999999999999999999999999999999999999999999999999999999999988 9999999988765  4788


Q ss_pred             HHHHHHHHHHHhhhcCCeEEEEEe-ecCccCccccCCccCCCceEEEeeeccccccccCch---HHHHHHHHHHHhcCCc
Q 006986          407 LLATGDRLREFAGSLSLNLEFEPI-LIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNR---LAVENALQMAKSLNPI  482 (622)
Q Consensus       407 L~~tG~rL~~fA~~lgvpFeF~~V-~~~~e~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~---~~~~~~L~~ir~L~P~  482 (622)
                      +++||+||.+||+++||||||++| +.++++++.++|++++||+|||||+|+||||++++.   .+++.||+.||+|+|+
T Consensus       158 l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~  237 (374)
T PF03514_consen  158 LQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPK  237 (374)
T ss_pred             HHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCC
Confidence            999999999999999999999995 678999999999999999999999999999997643   3689999999999999


Q ss_pred             EEEEEeecCCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhhhhhcccccCCccccccchhhHH
Q 006986          483 VVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWR  562 (622)
Q Consensus       483 Ivtl~E~Ea~~Ns~~F~~RF~eAL~yYsalFDSLea~l~~~s~eR~~vE~~~lgreI~niVAcEgg~~R~ER~E~~~~Wr  562 (622)
                      |||++|+|+|||+++|++||.|||+||+++|||||+++++++++|..+|+.+||++|+|||||| |.+|+||||++++|+
T Consensus       238 vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~e-g~~R~eR~e~~~~W~  316 (374)
T PF03514_consen  238 VVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACE-GEERVERHERLEQWR  316 (374)
T ss_pred             EEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcc-cccccccccchhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999 589999999999999


Q ss_pred             HHHHhCCCcccCCChHHHHHHHHHhhhcCCCCCcEEEeecCCEEEEEECCcceEEEeecC
Q 006986          563 IFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWR  622 (622)
Q Consensus       563 ~rm~~AGF~~v~ls~~a~~qak~LL~~~~~~~~f~l~~~~~g~L~LgWk~~pL~avSAWr  622 (622)
                      .||++|||+++|||+++++|||.||++|. ++||+|++ ++|||+||||++||+++||||
T Consensus       317 ~r~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~-~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  317 RRMRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEE-DGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHHHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEE-cCCEEEEEeCCcEEEEEeCcC
Confidence            99999999999999999999999999997 78899886 579999999999999999998

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 56/410 (13%), Positives = 115/410 (28%), Gaps = 141/410 (34%)

Query: 291 ERVAYYFTEALYKR--LTQRAEKSITTLEA---NCEDCILSFKTLNDACPYSKFAYLTAN 345
             +        Y+   L     ++     A   +C       K L            T  
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-------KIL----------LTTRF 274

Query: 346 QAILEATENASHIHIVDFGIVQGIQWSF----LLQALANRPTGKPVKVRISGIPAPALGK 401
           + + +    A+  HI     +     +     +   L      K +  R   +P   L  
Sbjct: 275 KQVTDFLSAATTTHIS----LDHHSMTLTPDEVKSLLL-----KYLDCRPQDLPREVLTT 325

Query: 402 SP-AASLLATGDRLREFAG-----------------SLSLN-LE-------------FEP 429
           +P   S++   + +R+                      SLN LE             F P
Sbjct: 326 NPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 430 -ILIPIRKL--------------------RASSFRVDPNEALVVNFMLQLNSLLDDNRLA 468
              IP   L                    + S     P E       + + S+  + ++ 
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE-----STISIPSIYLELKVK 438

Query: 469 VENALQMAKSLNPIVVTLAEYEANLNRTG--------------FLAR-FKNALKY-YTAV 512
           +EN   + +S+      +  Y                       +    KN        +
Sbjct: 439 LENEYALHRSI------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 513 FESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSD--F 570
           F  +  +       RF +E++I      +  A    G+    ++ ++ ++ ++ ++D  +
Sbjct: 493 FRMVFLDF------RF-LEQKI----RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 571 EG-----IPFSHYALSQAEILLWNYNYSPL--FTLNQSHDNLLTLSWKKV 613
           E      + F    L + E  L    Y+ L    L    + +   + K+V
Sbjct: 542 ERLVNAILDF----LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query622
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 97.76
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 97.63
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.12
3dtn_A234 Putative methyltransferase MM_2633; structural gen 95.47
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 94.94
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 94.82
3dh0_A219 SAM dependent methyltransferase; cystal structure, 94.39
1vl5_A260 Unknown conserved protein BH2331; putative methylt 94.23
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 93.91
3dp7_A363 SAM-dependent methyltransferase; structural genomi 93.65
3hnr_A220 Probable methyltransferase BT9727_4108; structural 93.09
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 93.07
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 92.79
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 92.73
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 92.42
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 92.31
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 92.31
1xxl_A239 YCGJ protein; structural genomics, protein structu 92.22
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 92.18
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 91.59
2r3s_A335 Uncharacterized protein; methyltransferase domain, 91.04
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 91.0
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 90.75
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 90.46
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 89.34
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 89.09
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 88.96
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 88.63
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 87.75
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 87.44
3ocj_A305 Putative exported protein; structural genomics, PS 86.96
3gu3_A284 Methyltransferase; alpha-beta protein, structural 86.44
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 86.42
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 86.3
3m70_A286 Tellurite resistance protein TEHB homolog; structu 86.23
2g72_A289 Phenylethanolamine N-methyltransferase; HET: SAM F 86.0
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 85.93
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 85.75
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 85.64
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 85.3
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 85.29
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 84.86
3f4k_A257 Putative methyltransferase; structural genomics, P 84.78
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 83.97
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 83.37
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 83.11
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 82.66
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 81.88
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 80.86
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
Probab=97.76  E-value=5.1e-06  Score=95.50  Aligned_cols=10  Identities=20%  Similarity=0.139  Sum_probs=0.0

Q ss_pred             ceEEEeeecc
Q 006986          448 EALVVNFMLQ  457 (622)
Q Consensus       448 EaLaVN~~~~  457 (622)
                      .+.|+|+.+.
T Consensus       548 ~l~V~ntHL~  557 (727)
T 4b8c_D          548 TIWAVTTHLH  557 (727)
T ss_dssp             ----------
T ss_pred             eEEEEEeccc
Confidence            4566776654
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query622
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.13
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.43
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 95.97
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 95.48
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 94.1
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 93.92
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 93.0
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 92.1
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 91.64
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 91.47
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 91.28
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 90.89
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 90.87
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 90.61
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 89.67
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 88.95
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 88.85
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 86.89
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 84.31
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 84.27
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 82.38
d1g6q1_328 Arginine methyltransferase, HMT1 {Baker's yeast (S 81.41
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.13  E-value=0.0048  Score=57.57  Aligned_cols=109  Identities=20%  Similarity=0.235  Sum_probs=62.7

Q ss_pred             CeeEEeecccccccchhHHHHHHhcCCCCCCceEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhcCCeEEEEEeecCcc
Q 006986          356 SHIHIVDFGIVQGIQWSFLLQALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIR  435 (622)
Q Consensus       356 ~~VHIVDfgI~~G~QWpsLiqaLA~R~~GpP~~LRITgI~~P~~g~~~~~~L~~tG~rL~~fA~~lgvpFeF~~V~~~~e  435 (622)
                      ..-||+|+|.|.|.-=    ..|+..-. .| ..+|||||..      ...++.+.+++.+    .+....++.+.....
T Consensus        39 ~~~~vLDlGCGtG~~~----~~l~~~~~-~~-~~~v~giD~S------~~ml~~A~~~~~~----~~~~~~~~~~~~d~~  102 (225)
T d1im8a_          39 ADSNVYDLGCSRGAAT----LSARRNIN-QP-NVKIIGIDNS------QPMVERCRQHIAA----YHSEIPVEILCNDIR  102 (225)
T ss_dssp             TTCEEEEESCTTCHHH----HHHHHTCC-CS-SCEEEEECSC------HHHHHHHHHHHHT----SCCSSCEEEECSCTT
T ss_pred             CCCEEEEeccchhhHH----HHHHHhhc-CC-CCceEEeCCC------HHHHHHHHHHhHh----hcccchhhhccchhh
Confidence            4568999999988533    33443211 23 5899999852      3556665555653    233333333332222


Q ss_pred             CccccCCccCCCceEEEeeeccccccccCchHHHHHHHHHH-HhcCCcE-EEEEeec
Q 006986          436 KLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMA-KSLNPIV-VTLAEYE  490 (622)
Q Consensus       436 ~L~~~~l~~~~~EaLaVN~~~~Lh~Ll~~~~~~~~~~L~~i-r~L~P~I-vtl~E~E  490 (622)
                      +       ...++.-+|-|.+.|||+..+   ....+|+.| |.|+|.- +++.|.-
T Consensus       103 ~-------~~~~~~d~i~~~~~l~~~~~~---d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         103 H-------VEIKNASMVILNFTLQFLPPE---DRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             T-------CCCCSEEEEEEESCGGGSCGG---GHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             c-------cccccceeeEEeeeccccChh---hHHHHHHHHHHhCCCCceeeccccc
Confidence            2       223445567777888887532   235677755 7899996 4555543
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure