Citrus Sinensis ID: 006999

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620--
MCVLMHADQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPYSISI
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccEEEEccEEEEEEccccccccEEEEEEcccccccccccEEEEccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHcccccccccccccccccHHHHHccHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccEEcccccHcHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHccHcccHHHHcEEEcccEEEccccHHHcccccHHHcHHHHHHHHHHcccccccEEccccccccccccccccccccccccccccccccccccHHHHHHcccEEEEEcHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEEcccccHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHccccHHHHcHHHHHHHcccEEEcccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHcccHHHcccccccccccHHHHHHHHHHHHHHHcHHHHHHHccHHHHHcccccccccEcccccccccccHHHHHHHHcHHHHHHHHEccHHHHHHHHHHHHHHccEcccccEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccEccccccEccccc
mcvlmhadqfsekregnfyvprdeaFSEVKQLTFSAKTVYSVLHALVPsletafvdpdlgfpyFSAIDALFnegvnlpplkqegfwnTLLPRLVKAIEDTgdnillfetpetmdrdkffwfrdeefsrqtlaglnpysirlitewplkstldpeiygppesaiTTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKsttlygsrtiffltpagtlrpiaieltrppmngkpqwkqvflpswhstECWLWKLAKAHVLAHDAGYHQLVSHWLrthcctepyviATNRqlsvmhpiyrlldphfryTMEINGLARQALVnadgiiessfspgkysmeFSSVAydkqwrfdhealpkdlisrglavedpsaphglkltiedypfandgLDLWDAIKQWVTDYVnhyypdkslvesDEELQAWWTEIrtvghgdkkhepwwpvlktpkdLIEIITTIVWVTSGhhaavnfgqytyggyfpnrpttarcniatedpsdeQWKFFLEkpenallntfpsqIQATKVMAILDVLsthspdeeylgkeiepawredpviNAAFEKFRGKLMELEGiidarnadpklrnrngagmvpyellkpfsepgvtgkgvpysisi
mcvlmhadqfsekregnfyvPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGdnillfetpetmdrDKFFWFRDEEFSrqtlaglnpySIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTiffltpagtlrPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTvghgdkkhepwwpvlktpKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLgkeiepawredpVINAAFEKFRGKLMELEGIIdarnadpklrnrnGAGMVPYEllkpfsepgvtgkgvpysisi
MCVLMHADQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPYSISI
****************NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDAR*************MVPYELL*******************
**VLMHA**********FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL*R*******Q**QVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPK***RNGAGMVPYELLKPFSEPGVTGKGVPYSISI
MCVLMHADQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPYSISI
**************EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPYSIS*
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MCVLMHADQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPYSISI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query622 2.2.26 [Sep-21-2011]
O24370899 Linoleate 13S-lipoxygenas N/A no 0.987 0.682 0.744 0.0
P38418896 Lipoxygenase 2, chloropla yes no 0.983 0.683 0.649 0.0
Q8GSM2896 Lipoxygenase 2.3, chlorop N/A no 0.983 0.683 0.612 0.0
Q84YK8941 Probable lipoxygenase 8, no no 0.988 0.653 0.620 0.0
P38419924 Lipoxygenase 7, chloropla no no 0.988 0.665 0.608 0.0
P93184936 Lipoxygenase 2.1, chlorop N/A no 0.982 0.652 0.575 0.0
Q8GSM3932 Lipoxygenase 2.2, chlorop N/A no 0.969 0.646 0.544 0.0
O24371914 Linoleate 13S-lipoxygenas N/A no 0.961 0.654 0.534 0.0
Q9FNX8926 Lipoxygenase 4, chloropla no no 0.980 0.658 0.498 0.0
Q9LNR3919 Lipoxygenase 3, chloropla no no 0.964 0.652 0.504 0.0
>sp|O24370|LOX21_SOLTU Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1 Back     alignment and function desciption
 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/618 (74%), Positives = 535/618 (86%), Gaps = 4/618 (0%)

Query: 8   DQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAI 67
           D  SE R    YVPRDEAFSEVK + FS  TVYSVLHA+VP+LE+   DP+LGFP+F AI
Sbjct: 283 DPLSETRSTFVYVPRDEAFSEVKSVAFSGNTVYSVLHAVVPALESVVTDPNLGFPHFPAI 342

Query: 68  DALFNEGVNLPPL--KQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEE 125
           D+LFN GV+LP L  K+ G +N ++PRL+KAI DT  ++LLFE+P+ + RDKF WFRD E
Sbjct: 343 DSLFNVGVDLPGLGDKKSGLFN-VVPRLIKAISDTRKDVLLFESPQLVQRDKFSWFRDVE 401

Query: 126 FSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQK 185
           F+RQTLAGLNPYSIRL+TEWPL+S LDP++YGPPES IT ELIEKEIG  ++VE+A++QK
Sbjct: 402 FARQTLAGLNPYSIRLVTEWPLRSKLDPKVYGPPESEITKELIEKEIGNYMTVEQAVQQK 461

Query: 186 KLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWK 245
           KLFILDYHDL LPYV KV +LK + LYGSRTIFFLTP GTL+P+AIELTRPP++ KPQWK
Sbjct: 462 KLFILDYHDLLLPYVNKVNELKGSMLYGSRTIFFLTPQGTLKPLAIELTRPPVDDKPQWK 521

Query: 246 QVFLPS-WHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHP 304
           +V+ P+ W++T  WLWKLAKAHVL+HD+GYHQLVSHWLRTHCCTEPY+IA+NRQLS MHP
Sbjct: 522 EVYSPNDWNATGAWLWKLAKAHVLSHDSGYHQLVSHWLRTHCCTEPYIIASNRQLSAMHP 581

Query: 305 IYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALP 364
           IYRLL PHFRYTMEIN LAR+AL+NA+G+IESSF PGKY++E SS+AY  +WRFD EALP
Sbjct: 582 IYRLLHPHFRYTMEINALAREALINANGVIESSFFPGKYAIELSSIAYGAEWRFDQEALP 641

Query: 365 KDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESD 424
           ++LISRGLAVEDP+ PHGLKL IEDYPFANDGL LWD +KQWVT+YVNHYYP  +L+ESD
Sbjct: 642 QNLISRGLAVEDPNEPHGLKLAIEDYPFANDGLVLWDILKQWVTNYVNHYYPQTNLIESD 701

Query: 425 EELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGG 484
           +ELQAWW+EI+ VGHGDK+ EPWWP LKTP DLI IITTIVWVTSGHHAAVNFGQY+Y G
Sbjct: 702 KELQAWWSEIKNVGHGDKRDEPWWPELKTPNDLIGIITTIVWVTSGHHAAVNFGQYSYAG 761

Query: 485 YFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPD 544
           YFPNRPT AR  + TEDP+ E+W++F+ KPE ALL  FPSQIQATKVMAILDVLS HSPD
Sbjct: 762 YFPNRPTVARSKMPTEDPTAEEWEWFMNKPEEALLRCFPSQIQATKVMAILDVLSNHSPD 821

Query: 545 EEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLK 604
           EEY+G++IEP W EDPVINAAFE F GKL ELEGIIDARN D KL NRNGAG++PYELLK
Sbjct: 822 EEYIGEKIEPYWAEDPVINAAFEVFSGKLKELEGIIDARNNDSKLSNRNGAGVMPYELLK 881

Query: 605 PFSEPGVTGKGVPYSISI 622
           P+SEPGVTGKGVPYSISI
Sbjct: 882 PYSEPGVTGKGVPYSISI 899
Plant lipoxygenase involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence. May not be involved in the bulk production of jasmonate upon wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure. Linolenic acid is the preferred substrate, before linoleic and arachidonic acids. Has also some activity with phosphatidylglycerol, but not with galactolipids.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 1EC: 2
>sp|P38418|LOX2_ARATH Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1 Back     alignment and function description
>sp|Q8GSM2|LOX23_HORVU Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1 Back     alignment and function description
>sp|Q84YK8|LOXC2_ORYSJ Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1 Back     alignment and function description
>sp|P38419|LOXC1_ORYSJ Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2 Back     alignment and function description
>sp|P93184|LOX21_HORVU Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1 Back     alignment and function description
>sp|Q8GSM3|LOX22_HORVU Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1 Back     alignment and function description
>sp|O24371|LOX31_SOLTU Linoleate 13S-lipoxygenase 3-1, chloroplastic OS=Solanum tuberosum GN=LOX3.1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FNX8|LOX4_ARATH Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNR3|LOX3_ARATH Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query622
18461098 895 lipoxygenase [Citrus jambhiri] 0.966 0.671 0.889 0.0
255544764 900 lipoxygenase, putative [Ricinus communis 0.990 0.684 0.773 0.0
71999169 898 lipoxygenase LOX1 [Populus deltoides] 0.990 0.685 0.764 0.0
213876486 900 lipoxygenase [Camellia sinensis] 0.990 0.684 0.766 0.0
71999171 903 lipoxygenase LOX2 [Populus deltoides] 0.987 0.679 0.757 0.0
224141179 848 predicted protein [Populus trichocarpa] 0.974 0.714 0.767 0.0
308943877 901 lipoxygenase [Camellia sinensis] 0.990 0.683 0.761 0.0
229554825 901 lipoxygenase [Camellia sinensis] 0.990 0.683 0.759 0.0
224053392 897 predicted protein [Populus trichocarpa] 0.987 0.684 0.756 0.0
326418056 898 putative 13-lipoxygenase [Capsicum annuu 0.987 0.683 0.768 0.0
>gi|18461098|dbj|BAB84352.1| lipoxygenase [Citrus jambhiri] Back     alignment and taxonomy information
 Score = 1101 bits (2848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/605 (88%), Positives = 550/605 (90%), Gaps = 4/605 (0%)

Query: 19  YVPRDEAFSEVKQLTFSAKTVYS-VLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNL 77
           YVPRDE    +K+ TF  K + S    +L   LE+              ID LF EGV +
Sbjct: 294 YVPRDEESRRLKETTFVIKGIVSDSCVSLNTKLESRICRHRWVSQTSQKIDKLFREGVKI 353

Query: 78  PPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPY 137
              K   FW +LLP  V+ I+D GD  L F +PET  RD+FFWFRDEEFSRQTLAGLNPY
Sbjct: 354 ---KDAEFWKSLLPGFVEEIKDIGDFFLRFTSPETFKRDRFFWFRDEEFSRQTLAGLNPY 410

Query: 138 SIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFL 197
           SIRLI EWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFL
Sbjct: 411 SIRLIAEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFL 470

Query: 198 PYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTEC 257
           PYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTEC
Sbjct: 471 PYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTEC 530

Query: 258 WLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTM 317
           WLWKLAKAHVLAHDAGYHQLVSHWL THCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTM
Sbjct: 531 WLWKLAKAHVLAHDAGYHQLVSHWLNTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTM 590

Query: 318 EINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDP 377
           EINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDP
Sbjct: 591 EINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDP 650

Query: 378 SAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTV 437
           SAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTV
Sbjct: 651 SAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTV 710

Query: 438 GHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNI 497
           GHGDKK EPWWP LKTP+DLIEIITTIVWVTSGHHAAVNFGQY YGGYFPNRPTTARCNI
Sbjct: 711 GHGDKKDEPWWPALKTPQDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNI 770

Query: 498 ATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWR 557
           ATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWR
Sbjct: 771 ATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWR 830

Query: 558 EDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 617
           EDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP
Sbjct: 831 EDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 890

Query: 618 YSISI 622
           YSISI
Sbjct: 891 YSISI 895

Source: Citrus jambhiri

Species: Citrus jambhiri

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544764|ref|XP_002513443.1| lipoxygenase, putative [Ricinus communis] gi|223547351|gb|EEF48846.1| lipoxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|71999169|gb|AAZ57444.1| lipoxygenase LOX1 [Populus deltoides] Back     alignment and taxonomy information
>gi|213876486|gb|ACJ54281.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|71999171|gb|AAZ57445.1| lipoxygenase LOX2 [Populus deltoides] Back     alignment and taxonomy information
>gi|224141179|ref|XP_002323952.1| predicted protein [Populus trichocarpa] gi|222866954|gb|EEF04085.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|308943877|gb|ADO51752.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|229554825|gb|ACQ76787.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|224053392|ref|XP_002297796.1| predicted protein [Populus trichocarpa] gi|222845054|gb|EEE82601.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|326418056|gb|ADZ73653.1| putative 13-lipoxygenase [Capsicum annuum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query622
TAIR|locus:2096915896 LOX2 "lipoxygenase 2" [Arabido 0.983 0.683 0.649 8.9e-228
UNIPROTKB|P38419924 CM-LOX1 "Lipoxygenase 7, chlor 0.988 0.665 0.608 1.9e-209
TAIR|locus:2030215926 LOX4 "lipoxygenase 4" [Arabido 0.980 0.658 0.5 2.4e-170
TAIR|locus:2018848919 LOX3 "lipoxygenase 3" [Arabido 0.963 0.651 0.505 1.5e-168
TAIR|locus:2008808917 LOX6 "lipoxygenase 6" [Arabido 0.974 0.660 0.505 1.5e-168
TAIR|locus:2011030859 LOX1 "lipoxygenase 1" [Arabido 0.963 0.697 0.467 3.2e-145
TAIR|locus:2087837886 LOX5 [Arabidopsis thaliana (ta 0.963 0.676 0.448 7e-141
UNIPROTKB|P29250870 LOX1.1 "Linoleate 9S-lipoxygen 0.966 0.690 0.424 1e-132
ZFIN|ZDB-GENE-060623-19676 zgc:136911 "zgc:136911" [Danio 0.512 0.471 0.327 4e-40
ZFIN|ZDB-GENE-050522-330676 zgc:110251 "zgc:110251" [Danio 0.543 0.5 0.318 7.7e-40
TAIR|locus:2096915 LOX2 "lipoxygenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2198 (778.8 bits), Expect = 8.9e-228, P = 8.9e-228
 Identities = 400/616 (64%), Positives = 476/616 (77%)

Query:     8 DQFSEKREGN-FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSA 66
             D  SE+R G  FYVPRDE FS  K  +F+ K V + L ++ P +E+  + P   FP+F A
Sbjct:   284 DPSSEQRYGGEFYVPRDEEFSTAKGTSFTGKAVLAALPSIFPQIESVLLSPQEPFPHFKA 343

Query:    67 IDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEF 126
             I  LF EG+ LP  K  G    LLPR++KA+ +  D+IL F+ P  ++RD+F W RD+EF
Sbjct:   344 IQNLFEEGIQLP--KDAGLL-PLLPRIIKALGEAQDDILQFDAPVLINRDRFSWLRDDEF 400

Query:   127 SRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKK 186
             +RQTLAGLNPYSI+L+ EWPL S LDP +YG P S IT E++E+E+ G ++V+EA+K K+
Sbjct:   401 ARQTLAGLNPYSIQLVEEWPLISKLDPAVYGDPTSLITWEIVEREVKGNMTVDEALKNKR 460

Query:   187 LFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQ 246
             LF+LDYHDL LPYV KVR+L +TTLY SRT+FFL+   TLRP+AIELT PP   KPQWKQ
Sbjct:   461 LFVLDYHDLLLPYVNKVRELNNTTLYASRTLFFLSDDSTLRPVAIELTCPPNINKPQWKQ 520

Query:   247 VFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 306
             VF P + +T CWLW LAK H ++HDAGYHQL+SHWLRTH CTEPY+IA NRQLS MHPIY
Sbjct:   521 VFTPGYDATSCWLWNLAKTHAISHDAGYHQLISHWLRTHACTEPYIIAANRQLSAMHPIY 580

Query:   307 RLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKD 366
             RLL PHFRYTMEIN  ARQ+LVN  GIIE+ F PGKY++E SS  Y K WRFD E LP D
Sbjct:   581 RLLHPHFRYTMEINARARQSLVNGGGIIETCFWPGKYALELSSAVYGKLWRFDQEGLPAD 640

Query:   367 LISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEE 426
             LI RGLA ED +A HG++LTI DYPFANDGL LWDAIK+WVTDYV HYYPD+ L+ SDEE
Sbjct:   641 LIKRGLAEEDKTAEHGVRLTIPDYPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEE 700

Query:   427 LQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYF 486
             LQ WW+E+R +GHGDKK EPWWPVLKT  DLI ++TTI WVTSGHHAAVNFGQY YGGYF
Sbjct:   701 LQGWWSEVRNIGHGDKKDEPWWPVLKTQDDLIGVVTTIAWVTSGHHAAVNFGQYGYGGYF 760

Query:   487 PNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEE 546
             PNRPTT R  + TEDP+DE  K F E PE  LL T+PSQ QAT VM  LD+LSTHSPDEE
Sbjct:   761 PNRPTTTRIRMPTEDPTDEALKEFYESPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEE 820

Query:   547 YLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPF 606
             Y+G++ E +W  +PVINAAFE+F+GKL  LEG+ID RN +  L+NR GAG+V YELLKP 
Sbjct:   821 YIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPT 880

Query:   607 SEPGVTGKGVPYSISI 622
             SE GVTG GVPYSISI
Sbjct:   881 SEHGVTGMGVPYSISI 896
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0005737 "cytoplasm" evidence=IDA
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0080027 "response to herbivore" evidence=IEP
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009617 "response to bacterium" evidence=IEP
GO:0016165 "lipoxygenase activity" evidence=IMP;IDA
GO:0009620 "response to fungus" evidence=IEP
GO:0034440 "lipid oxidation" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0000096 "sulfur amino acid metabolic process" evidence=RCA
GO:0006546 "glycine catabolic process" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA
GO:0006766 "vitamin metabolic process" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA
GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA
GO:0009106 "lipoate metabolic process" evidence=RCA
GO:0009108 "coenzyme biosynthetic process" evidence=RCA
GO:0009117 "nucleotide metabolic process" evidence=RCA
GO:0009269 "response to desiccation" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009416 "response to light stimulus" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=IMP;RCA;TAS
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0015994 "chlorophyll metabolic process" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0019216 "regulation of lipid metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019748 "secondary metabolic process" evidence=RCA
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0031408 "oxylipin biosynthetic process" evidence=RCA
GO:0044272 "sulfur compound biosynthetic process" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
GO:0009414 "response to water deprivation" evidence=TAS
GO:0051707 "response to other organism" evidence=TAS
UNIPROTKB|P38419 CM-LOX1 "Lipoxygenase 7, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2030215 LOX4 "lipoxygenase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018848 LOX3 "lipoxygenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008808 LOX6 "lipoxygenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011030 LOX1 "lipoxygenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087837 LOX5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P29250 LOX1.1 "Linoleate 9S-lipoxygenase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060623-19 zgc:136911 "zgc:136911" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-330 zgc:110251 "zgc:110251" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P38418LOX2_ARATH1, ., 1, 3, ., 1, 1, ., 1, 20.64930.98390.6830yesno
O24370LOX21_SOLTU1, ., 1, 3, ., 1, 1, ., 1, 20.74430.98710.6829N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.13.110.691
3rd Layer1.13.11.120.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
pfam00305667 pfam00305, Lipoxygenase, Lipoxygenase 0.0
PLN02305918 PLN02305, PLN02305, lipoxygenase 0.0
PLN02264919 PLN02264, PLN02264, lipoxygenase 0.0
PLN02337866 PLN02337, PLN02337, lipoxygenase 0.0
>gnl|CDD|215847 pfam00305, Lipoxygenase, Lipoxygenase Back     alignment and domain information 
 Score =  817 bits (2112), Expect = 0.0
 Identities = 299/596 (50%), Positives = 387/596 (64%), Gaps = 5/596 (0%)

Query: 11  SEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDAL 70
           SE R G+ Y+PRDE F  +K   F    + SVL  +VP+ E+        F  F  +  L
Sbjct: 77  SESRSGDVYLPRDERFGHLKSSDFLTYALKSVLQLVVPAFESVLNSTPSEFNSFEDVRKL 136

Query: 71  FNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQT 130
           F  G+ LP         + LP L +     G+ IL F  P+ ++R K  W  DEEF+R+ 
Sbjct: 137 FEGGIKLPTDVLSK--ISPLPVLKEIFRTDGEQILKFPPPKVIERVKSAWMTDEEFAREM 194

Query: 131 LAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFIL 190
           LAG NP  IR +TE+P KS LDP +YG   S IT E +E ++ G+ +VEEA++  +LFIL
Sbjct: 195 LAGANPVVIRRLTEFPPKSKLDPAVYGDQTSPITKEHLEAQLEGL-TVEEALQNGRLFIL 253

Query: 191 DYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLP 250
           D+HDL  PY+ K+    +T LY  RT+ FL   GTL+P+AIEL+ P  +G     QVFLP
Sbjct: 254 DFHDLDGPYLNKINC-TTTKLYAPRTLLFLQDDGTLKPLAIELSLPHPDGDGAVSQVFLP 312

Query: 251 SWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLD 310
           S    E  +W LAKA V  +D+GYHQL+SHWL TH   EP+VIATNRQLSV+HPI++LL 
Sbjct: 313 SDDGVESSIWLLAKAWVRVNDSGYHQLISHWLNTHAVAEPFVIATNRQLSVLHPIFKLLV 372

Query: 311 PHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISR 370
           PH+RYTM IN LARQ+L+NA GI E +FSPGKY +E SS AY K W F  +ALP DLI R
Sbjct: 373 PHYRYTMNINALARQSLINAGGIFEKAFSPGKYGVEMSSAAY-KDWVFTDQALPADLIKR 431

Query: 371 GLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAW 430
           GLAVEDPSAPHG++L IEDYP+A DGL++WDAIK WV +YV+ YY     V+ D ELQAW
Sbjct: 432 GLAVEDPSAPHGVRLLIEDYPYAVDGLEIWDAIKTWVQEYVSLYYKTDEAVKKDPELQAW 491

Query: 431 WTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRP 490
           W E+  VGHGDKK EPWWP L+T + LIE  T I+W  S  HAAVNFGQY YGG+ PNRP
Sbjct: 492 WKEVVEVGHGDKKDEPWWPKLQTREQLIEFCTIIIWTASALHAAVNFGQYDYGGWIPNRP 551

Query: 491 TTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGK 550
           TT+R  +      +  ++  ++ P+ A L T P ++QA   ++++++LS H+ DE YLG+
Sbjct: 552 TTSRRFMPEPGTKEATYEELVKNPDKAYLKTIPPKLQALLDLSVIEILSRHASDEVYLGQ 611

Query: 551 EIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPF 606
             E  W  D    AAF++F  KL E+E  I  RN D  L+NR+G   +PY LLKP 
Sbjct: 612 RDEEHWTSDKEPLAAFKRFGKKLAEIEKKITERNKDLSLKNRSGPVKMPYTLLKPS 667

Length = 667
>gnl|CDD|215174 PLN02305, PLN02305, lipoxygenase Back     alignment and domain information
>gnl|CDD|215148 PLN02264, PLN02264, lipoxygenase Back     alignment and domain information
>gnl|CDD|215193 PLN02337, PLN02337, lipoxygenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 622
PLN02305918 lipoxygenase 100.0
PLN02264919 lipoxygenase 100.0
PLN02337866 lipoxygenase 100.0
PF00305667 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Li 100.0
>PLN02305 lipoxygenase Back     alignment and domain information 
Probab=100.00  E-value=2.3e-186  Score=1561.32  Aligned_cols=616  Identities=54%  Similarity=0.981  Sum_probs=588.0

Q ss_pred             ccccCCCCCCCCC---CCccCCCCCcChhhhhhhhhhHHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHHhcCCCCCCc
Q 006999            4 LMHADQFSEKREG---NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPL   80 (622)
Q Consensus         4 ~~~~~~~~e~~~~---~~ylP~de~f~~~k~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ly~~~~~~~~~   80 (622)
                      -++|||++|||..   .+||||||+|++.|.++|.+.++|+++|.++|.++++++.+..+|+||+||++||++|.++|..
T Consensus       297 ~t~~Dp~~Esr~~~~~~~YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~  376 (918)
T PLN02305        297 PTKKDPLCESRIEKPHPVYVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTE  376 (918)
T ss_pred             CCCCCCcccccccCCCCcCCCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCch
Confidence            3689999999954   4799999999999999999999999999999999999887789999999999999999999874


Q ss_pred             cccchhhhhhH-HHHHHhhhcCccccccCCcccccccccCccccHHHHHHHhhCCCcccccccccCCCCCCCCCCcCCCC
Q 006999           81 KQEGFWNTLLP-RLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPP  159 (622)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~P~~~~~~~~~W~~D~~Fg~Q~LaG~NP~~I~r~~~~P~~~~l~~~~~g~~  159 (622)
                      ....+++.++| .+.+.++++++.++|||+|+||++|+++|++|+|||||+|||+||++|+||++||++++|||++||++
T Consensus       377 ~~~~~~~~p~~~~~~~~i~~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~  456 (918)
T PLN02305        377 EPKDIGLNPFLGNFMKQVLSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPP  456 (918)
T ss_pred             hhhhhhcCCchHHHHHHhhhcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCc
Confidence            21223333343 45555588899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHhhCCcccHHHHHhcCcEEEecccccccchhhhhccCCCccccccceEEeeCCCCceeeEEEEecCCCCC
Q 006999          160 ESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMN  239 (622)
Q Consensus       160 ~~~vt~~~i~~~l~g~~tl~~al~~grLFi~Dy~~~~lp~~~~~n~~~g~~~yA~~~Lf~l~~~g~L~PiAIqL~~~~~~  239 (622)
                      +|+||++||+..|+| +||++||++|||||+||||++|||+.++|..+++++|||+||||++++|+|+||||||++++++
T Consensus       457 ~s~iT~e~ve~~L~G-~TleeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~  535 (918)
T PLN02305        457 ESALTEELIERELEG-MTVEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTP  535 (918)
T ss_pred             CCCcCHHHHHhhcCC-CcHHHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCC
Confidence            999999999999998 9999999999999999999999999899999999999999999999999999999999999877


Q ss_pred             CCCCCceeeeCCCCCCCchHHHHHHHHHHhhhhhhHHHHHhhhhhccchhHHHHHHhccCCccCchhhccccchhhhccc
Q 006999          240 GKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEI  319 (622)
Q Consensus       240 ~~~~~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~Hqli~Hll~THlv~Epf~vAt~R~Ls~~HPv~kLL~PH~r~tl~I  319 (622)
                      +++..++||||.++++++|.|+||||||++||+++||+++||++||+++|||||||+||||.+|||||||.||||+||+|
T Consensus       536 ~~p~~~~VftP~~d~~~~w~W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~I  615 (918)
T PLN02305        536 SSPGNKFVYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEI  615 (918)
T ss_pred             CCCCcceeeCCCCCCCCchHHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHH
Confidence            66666789999876678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhcccCCCccccccCCCChhHHHHHHHHhcccCCCCccCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHHH
Q 006999          320 NGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDL  399 (622)
Q Consensus       320 N~~Ar~~Li~~gG~id~~~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~RG~~~~d~~~~~g~~~~lp~YpYrdDgl~i  399 (622)
                      |++||++||++||++|++|++|+++++|++++|++.|+|++++||+||++|||+++|+++|||+++.|||||||||||+|
T Consensus       616 NalAR~~LIn~gGiie~~fspg~~~~elss~aYk~~w~Fd~~~LP~DL~kRGva~~D~~~p~gl~l~ipdYPYrdDGL~I  695 (918)
T PLN02305        616 NALARQSLINGGGIIEACFSPGKYAMELSSAAYKSMWRFDMEALPADLIRRGMAEEDPSMPCGVRLVIEDYPYAADGLLI  695 (918)
T ss_pred             HHHHHHhccCCCCceeeeeccchhHHHHHHHHHHhcCcCccccCHHHHHHcCCCccCCCCcccccccCCCCchhhhhHHH
Confidence            99999999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCccccccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhHhhhccccccccccccc
Q 006999          400 WDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQ  479 (622)
Q Consensus       400 W~aI~~fV~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~p~~~t~~~Lv~~lT~iIf~aS~qHAAVNfgQ  479 (622)
                      |+||++||++||++||++|++|++|.|||+||+||+++||+|+++.+|||+|+|+++||++||+|||+||+|||||||||
T Consensus       696 W~AIk~wV~~yV~~YY~~D~~V~~D~ELQaW~~Ei~~~Gh~d~kd~~~~p~l~T~~eLi~~lT~IIwtaSaqHAAVNFgQ  775 (918)
T PLN02305        696 WSAIKEWVESYVDHFYSEPNSITSDLELQAWWDEIKNKGHYDKRNEPWWPKLNTKEDLSGILTTMIWIASGQHAAINFGQ  775 (918)
T ss_pred             HHHHHHHHHHHHHhhCCChhhhccCHHHHHHHHHHHhcCCCCCCCCCCCcCCcCHHHHHHHHHhhhhhcchhhhhhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCccccccCCCCCCCCCchHHHHhhhchHHHHHccCCChHHHHHHHHHHHHhcCCCCCCccccCCCCC--CCC
Q 006999          480 YTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEP--AWR  557 (622)
Q Consensus       480 ~~~~gf~PN~P~~lr~p~P~~~kg~~~~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~--~~~  557 (622)
                      |+|+||+||+|++||+|||++  ++.++++|+.+||+++|++||++.||+.+|+++++||+|++||+|||++.+.  .|+
T Consensus       776 ydy~gfvPN~P~~~Rrp~P~~--~~~~~~~l~~~pe~~~L~tLP~~~qa~~~mav~~iLS~hs~de~yLG~~~~~~~~w~  853 (918)
T PLN02305        776 YPFGGYVPNRPTLMRKLIPQE--NDPDYEKFIRNPQYTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGELRHLHSHWI  853 (918)
T ss_pred             cccccccCCCchhhcCCCCCC--CCchHHHhhhChHHHHHHHCCcHHHHHHHHHHHHHhccCCCCcccccCCCCcccccc
Confidence            999999999999999999987  6778999999999999999999999999999999999999999999999875  699


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCcCCcceecCCCCCCCCcCCCCccccC
Q 006999          558 EDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPYSISI  622 (622)
Q Consensus       558 ~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~~~r~~~~~~pY~~L~Ps~~~g~t~~~IpnSisI  622 (622)
                      .|+++++|+++|+++|++||++|++||++++||||+||+++||+||+|+++||||||||||||||
T Consensus       854 ~D~~~~~A~~rF~~~L~eIE~~I~~RN~~~~lkNR~G~~~~PY~lL~P~s~~G~T~rgIPNSISI  918 (918)
T PLN02305        854 NDHEVVKLFNKFSARLEEIEKTINERNKDIRLKNRNGAGIPPYELLLPTSGPGVTGRGIPNSISI  918 (918)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCCCCccccCCCCCCCCCcCCCCCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999998

>PLN02264 lipoxygenase Back     alignment and domain information
>PLN02337 lipoxygenase Back     alignment and domain information
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
2iuk_A864 Crystal Structure Of Soybean Lipoxygenase-D Length 1e-163
1ik3_A857 Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydrope 1e-152
2iuj_A853 Crystal Structure Of Soybean Lipoxygenase-B Length 1e-152
1rov_A857 Lipoxygenase-3 Treated With Cumene Hydroperoxide Le 1e-150
3pzw_A839 Soybean Lipoxygenase-1 - Re-Refinement Length = 839 1e-150
2sbl_B839 The Three-Dimensional Structure Of An Arachidonic A 1e-150
3bnd_A839 Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 1e-150
3bnb_A839 Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 1e-149
1fgr_A839 Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Leng 1e-149
1fgq_A839 Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Leng 1e-149
1fgt_A839 Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Leng 1e-149
1fgm_A839 Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Leng 1e-149
3bne_A839 Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 1e-149
1fgo_A839 Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Leng 1e-149
1y4k_A839 Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Leng 1e-149
3bnc_A839 Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 1e-149
3o8y_A691 Stable-5-Lipoxygenase Length = 691 6e-47
3v92_B691 S663a Stable-5-Lox Length = 691 8e-47
3v98_A691 S663d Stable-5-Lox Length = 691 8e-47
3dy5_A1066 Allene Oxide Synthase 8r-Lipoxygenase From Plexaura 4e-44
3fg1_A696 Crystal Structure Of Delta413-417:gs Lox Length = 6 4e-44
2fnq_A699 Insights From The X-Ray Crystal Structure Of Coral 4e-44
3fg4_A696 Crystal Structure Of Delta413-417:gs I805a Lox Leng 7e-44
3fg3_A696 Crystal Structure Of Delta413-417:gs I805w Lox Leng 2e-43
3vf1_A698 Structure Of A Calcium-Dependent 11r-Lipoxygenase S 1e-41
3rde_A573 Crystal Structure Of The Catalytic Domain Of Porcin 2e-39
1lox_A662 Rabbit Reticulocyte 15-Lipoxygenase Length = 662 4e-38
2p0m_A662 Revised Structure Of Rabbit Reticulocyte 15s-Lipoxy 5e-38
3d3l_A541 The 2.6 A Crystal Structure Of The Lipoxygenase Dom 6e-38
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D Length = 864 Back     alignment and structure 
Iteration: 1

 Score =  571 bits (1472), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 297/619 (47%), Positives = 395/619 (63%), Gaps = 15/619 (2%)
Query: 11  SEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG---FPYFSAI 67
           + ++ G  YVPRDE F  +K   F    + S+ H ++P  ++A     +    F  F  +
Sbjct: 254 NSEKPGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDV 313
Query: 68  DALFNEGVNLPP--LKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEE 125
            +L+  G+ LP   L Q     + LP L +     G+N+L F  P      K     DEE
Sbjct: 314 RSLYEGGIKLPTDILSQI----SPLPALKEIFRTDGENVLQFPPPHVAKVSKSGVMTDEE 369
Query: 126 FSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQK 185
           F+R+ +AG+NP  IR + E+P KSTLDP +YG   S IT E +E  +GG ++VEEA+  +
Sbjct: 370 FAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGG-VTVEEALSTQ 428
Query: 186 KLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWK 245
           +LFILDY D F+PY+ ++  L +   Y +RTI FL   GTL+P+AIEL++P  +G     
Sbjct: 429 RLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGP 488
Query: 246 Q--VFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMH 303
           +  V LP+    +  +W LAKAHV+ +D+GYHQLVSHWL TH   EP+ IATNR LSV+H
Sbjct: 489 ESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLH 548
Query: 304 PIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEAL 363
           PIY+LL PH+R T+ INGLARQ+L+NADGIIE SF PGKYS+E SS  Y K W F H+AL
Sbjct: 549 PIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVY-KNWVFTHQAL 607
Query: 364 PKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVES 423
           P DL+ RGLA+EDPSAPHGL+L IEDYP+A DGL++WDAIK WV +YV+ YYP  + V+ 
Sbjct: 608 PADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQ 667
Query: 424 DEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYG 483
           D ELQAWW E    GHGD K +PWWP  +T +DLI+  + IVW  S  HAAVNFGQY YG
Sbjct: 668 DTELQAWWKEAVEKGHGDLKEKPWWPKKQTTEDLIQSCSIIVWTASALHAAVNFGQYPYG 727
Query: 484 GYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSP 543
           G   NRPT AR  I  E     ++   ++ P+ A L T   + +    ++++++LS H+ 
Sbjct: 728 GLILNRPTLARRFIPAE--GTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHAS 785
Query: 544 DEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELL 603
           DE YLG+   P W  D     AF++F  KL  +EG I+ARN+DP LRNR G   +PY LL
Sbjct: 786 DEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLL 845
Query: 604 KPFSEPGVTGKGVPYSISI 622
              SE G+T KG+P SISI
Sbjct: 846 HRSSEEGLTFKGIPNSISI 864
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy- 9(Z),11(E)-Octadecadienoic Acid Length = 857 Back     alignment and structure
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B Length = 853 Back     alignment and structure
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide Length = 857 Back     alignment and structure
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement Length = 839 Back     alignment and structure
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15- Lipoxygenase Length = 839 Back     alignment and structure
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 Back     alignment and structure
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 Back     alignment and structure
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Length = 839 Back     alignment and structure
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Length = 839 Back     alignment and structure
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Length = 839 Back     alignment and structure
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Length = 839 Back     alignment and structure
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 Back     alignment and structure
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Length = 839 Back     alignment and structure
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Length = 839 Back     alignment and structure
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 Back     alignment and structure
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase Length = 691 Back     alignment and structure
>pdb|3V92|B Chain B, S663a Stable-5-Lox Length = 691 Back     alignment and structure
>pdb|3V98|A Chain A, S663d Stable-5-Lox Length = 691 Back     alignment and structure
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura Homomalla Length = 1066 Back     alignment and structure
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox Length = 696 Back     alignment and structure
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r- Lipoxygenase: Calcium Activation Via A C2-Like Domain And A Structural Basis Of Product Chirality Length = 699 Back     alignment and structure
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox Length = 696 Back     alignment and structure
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox Length = 696 Back     alignment and structure
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests A Mechanism For Ca-Regulation Length = 698 Back     alignment and structure
>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine Leukocyte 12- Lipoxygenase Length = 573 Back     alignment and structure
>pdb|1LOX|A Chain A, Rabbit Reticulocyte 15-Lipoxygenase Length = 662 Back     alignment and structure
>pdb|2P0M|A Chain A, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase Length = 662 Back     alignment and structure
>pdb|3D3L|A Chain A, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp Target) Length = 541 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
2iuk_A864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 0.0
1f8n_A839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 0.0
2iuj_A853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 0.0
3v98_A691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 1e-169
3rde_A573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 1e-165
3dy5_A1066 Allene oxide synthase-lipoxygenase protein; fusion 1e-164
1lox_A662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 1e-163
3fg1_A696 Allene oxide synthase-lipoxygenase protein; arichi 1e-162
3d3l_A541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 1e-160
3vf1_A698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 1e-156
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Length = 864 Back     alignment and structure
 Score =  665 bits (1717), Expect = 0.0
 Identities = 299/622 (48%), Positives = 392/622 (63%), Gaps = 12/622 (1%)

Query: 6   HADQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPD---LGFP 62
             D  SEK  G  YVPRDE F  +K   F    + S+ H ++P  ++A          F 
Sbjct: 250 RTDPNSEKP-GEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFE 308

Query: 63  YFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFR 122
            F  + +L+  G+ LP         + LP L +     G+N+L F  P      K     
Sbjct: 309 SFEDVRSLYEGGIKLPTDILSQI--SPLPALKEIFRTDGENVLQFPPPHVAKVSKSGVMT 366

Query: 123 DEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAI 182
           DEEF+R+ +AG+NP  IR + E+P KSTLDP +YG   S IT E +E  +GG+ +VEEA+
Sbjct: 367 DEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGGV-TVEEAL 425

Query: 183 KQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKP 242
             ++LFILDY D F+PY+ ++  L +   Y +RTI FL   GTL+P+AIEL++P  +G  
Sbjct: 426 STQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDN 485

Query: 243 QWK--QVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLS 300
                 V LP+    +  +W LAKAHV+ +D+GYHQLVSHWL TH   EP+ IATNR LS
Sbjct: 486 LGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLS 545

Query: 301 VMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDH 360
           V+HPIY+LL PH+R T+ INGLARQ+L+NADGIIE SF PGKYS+E SS  Y K W F H
Sbjct: 546 VLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVY-KNWVFTH 604

Query: 361 EALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSL 420
           +ALP DL+ RGLA+EDPSAPHGL+L IEDYP+A DGL++WDAIK WV +YV+ YYP  + 
Sbjct: 605 QALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAA 664

Query: 421 VESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQY 480
           V+ D ELQAWW E    GHGD K +PWWP  +T +DLI+  + IVW  S  HAAVNFGQY
Sbjct: 665 VQQDTELQAWWKEAVEKGHGDLKEKPWWPKKQTTEDLIQSCSIIVWTASALHAAVNFGQY 724

Query: 481 TYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLST 540
            YGG   NRPT AR  I  E     ++   ++ P+ A L T   + +    ++++++LS 
Sbjct: 725 PYGGLILNRPTLARRFIPAEG--TPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSR 782

Query: 541 HSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPY 600
           H+ DE YLG+   P W  D     AF++F  KL  +EG I+ARN+DP LRNR G   +PY
Sbjct: 783 HASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPY 842

Query: 601 ELLKPFSEPGVTGKGVPYSISI 622
            LL   SE G+T KG+P SISI
Sbjct: 843 TLLHRSSEEGLTFKGIPNSISI 864
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Length = 839 Back     alignment and structure
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Length = 853 Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Length = 691 Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Length = 573 Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Length = 1066 Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Length = 662 Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Length = 696 Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Length = 541 Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Length = 698 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query622
2iuk_A864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 100.0
2iuj_A853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 100.0
1f8n_A839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 100.0
3rde_A573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 100.0
3v98_A691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 100.0
3fg1_A696 Allene oxide synthase-lipoxygenase protein; arichi 100.0
3vf1_A698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 100.0
1lox_A662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 100.0
3dy5_A1066 Allene oxide synthase-lipoxygenase protein; fusion 100.0
3d3l_A541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 100.0
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Back     alignment and structure
Probab=100.00  E-value=9.9e-179  Score=1514.57  Aligned_cols=610  Identities=49%  Similarity=0.866  Sum_probs=581.1

Q ss_pred             cccCCCCCCCCCCCccCCCCCcChhhhhhhhhhHHHHHHHhhhhhhhhhcc--C-CCCCCCCHHHHHHHHhcCCCCCCcc
Q 006999            5 MHADQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFV--D-PDLGFPYFSAIDALFNEGVNLPPLK   81 (622)
Q Consensus         5 ~~~~~~~e~~~~~~ylP~de~f~~~k~~~f~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~s~~d~~~ly~~~~~~~~~~   81 (622)
                      ++|||.+|||.. +||||||||++.|.++|.+++++++++.++|.++++++  . ...+|+||+||++||++|.++|.+ 
T Consensus       249 ~~~dp~~e~~~~-~yvPrDe~F~~~K~~~f~~~~~k~~~~~~~p~l~~~~~~~~~~~~~f~sf~di~~ly~~g~~l~~~-  326 (864)
T 2iuk_A          249 TRTDPNSEKPGE-VYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTD-  326 (864)
T ss_dssp             CSSCTTSBCCCC-CCCCGGGSCCCSSGGGCHHHHHHHHHHTTHHHHHHHHHSSCSSCSSCCSHHHHHTTTSSCEECCHH-
T ss_pred             CCCCCCcccccc-CCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHhccccCchh-
Confidence            679999999965 99999999999999999999999999999999999874  2 467999999999999999887762 


Q ss_pred             ccchhhhh-hHHHHHHhhhcCccccccCCcccccccccCccccHHHHHHHhhCCCcccccccccCCCCCCCCCCcCCCCC
Q 006999           82 QEGFWNTL-LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPE  160 (622)
Q Consensus        82 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~W~~D~~Fg~Q~LaG~NP~~I~r~~~~P~~~~l~~~~~g~~~  160 (622)
                        ..++.. ++.+.+.+++++++++|||+|++++.++++|++|++||||+|||+||++|+||++||++++|||++||+++
T Consensus       327 --~~~~~~p~~~~~~~~~~~~e~~lk~p~P~vi~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~yg~~~  404 (864)
T 2iuk_A          327 --ILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQT  404 (864)
T ss_dssp             --HHHHHSSCTTTTTTCBCTTSSEEBCCCCSSCSCSSSSSSCHHHHHHHHHHSSSCSCCEECSSSSCCCCSCHHHHCCCC
T ss_pred             --hhcccCcHHHHHHHhhccccchhcCCCcceecccchhhhchHHHHHHHhcCCCchhhhhhhccCCcccCChhhcCCcc
Confidence              122211 22344555677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhhCCcccHHHHHhcCcEEEecccccccchhhhhccCCCccccccceEEeeCCCCceeeEEEEecCCCCCC
Q 006999          161 SAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNG  240 (622)
Q Consensus       161 ~~vt~~~i~~~l~g~~tl~~al~~grLFi~Dy~~~~lp~~~~~n~~~g~~~yA~~~Lf~l~~~g~L~PiAIqL~~~~~~~  240 (622)
                      |+||++||+..++| +||++||++|||||+||||.+|||+.++|.++|+++|||+||||++++|+|+||||||+++++.+
T Consensus       405 s~it~e~i~~~l~g-~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~~~~~YAp~~Lffl~~dG~L~PlAIqLs~p~~~~  483 (864)
T 2iuk_A          405 STITKEQLEINMGG-VTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDG  483 (864)
T ss_dssp             CCCCHHHHGGGTTT-CCHHHHHHTTCEEEEECHHHHGGGHHHHHTSTTCCCCEEEEEEEECTTSCEEEEEEEEEECCSSS
T ss_pred             cccCHHHHhhccCC-CcHHHHHhcCCEEEecchhhhccchhhcccCCCceeecceEEEEEcCCCCEeEEEEEeeCCCCCc
Confidence            99999999999998 99999999999999999998899999999999999999999999999999999999999987554


Q ss_pred             CC--CCceeeeCCCCCCCchHHHHHHHHHHhhhhhhHHHHHhhhhhccchhHHHHHHhccCCccCchhhccccchhhhcc
Q 006999          241 KP--QWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTME  318 (622)
Q Consensus       241 ~~--~~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~Hqli~Hll~THlv~Epf~vAt~R~Ls~~HPv~kLL~PH~r~tl~  318 (622)
                      ++  +.++||||+|+++++|.|+|||+||++||+++||+++||++||+++|||+|||+||||.+|||||||.||||+||+
T Consensus       484 ~~~~~~~~VftP~dd~~~~~~W~LAK~~v~~aD~~~HqlisHll~THlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~Tl~  563 (864)
T 2iuk_A          484 DNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTIN  563 (864)
T ss_dssp             SSSCCEEEEECCCSSSSHHHHHHHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHSCTTCHHHHHHGGGGTTHHH
T ss_pred             cccCCCCCeECCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCccCchHHhhHHHHHHHHH
Confidence            32  5689999998767789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHhcccCCCccccccCCCChhHHHHHHHHhcccCCCCccCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHH
Q 006999          319 INGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLD  398 (622)
Q Consensus       319 IN~~Ar~~Li~~gG~id~~~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~RG~~~~d~~~~~g~~~~lp~YpYrdDgl~  398 (622)
                      ||++||+.||++||++|++|++|+++++|++++|++ |+|++++||+||++|||+++|+++|||+++.||+||||+|||+
T Consensus       564 IN~~AR~~LI~~gGiie~~~~~G~~~~elss~ayk~-w~f~~~~LP~DL~~RGva~~D~~~p~gl~l~ipdYpYadDGL~  642 (864)
T 2iuk_A          564 INGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKN-WVFTHQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLE  642 (864)
T ss_dssp             HHHHHHHHTSSTTSHHHHHSTTGGGHHHHHHHHHTT-CCGGGSSHHHHHHHTTSEEECSSSTTSEEESSSCCHHHHHHHH
T ss_pred             HHHHHHHhccCCCCceeeeccCchhHHHHHHHHHcc-CCCccccCcHHHHhcCCCCCCccccccccccCCCCCccccHHH
Confidence            999999999999999999999999999999999997 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCccccccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhHhhhcccccccccccc
Q 006999          399 LWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFG  478 (622)
Q Consensus       399 iW~aI~~fV~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~p~~~t~~~Lv~~lT~iIf~aS~qHAAVNfg  478 (622)
                      ||+||++||++||++||++|++|++|.|||+||+||+++||+++++.+|||+|+|+++||++||+|||+||+||||||||
T Consensus       643 iW~AIk~~V~~yV~~YY~sD~~V~~D~ELQaW~~Ei~~~Gh~d~kd~~~~P~l~T~~eLi~~lT~IIf~aSaqHAAVNFg  722 (864)
T 2iuk_A          643 IWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLKEKPWWPKKQTTEDLIQSCSIIVWTASALHAAVNFG  722 (864)
T ss_dssp             HHHHHHHHHHHHHHHHCCSHHHHHHCHHHHHHHHHHHHTTTGGGTTCTTCCCSSSHHHHHHHHHHHHHHHTHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCchhhcCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCHHHHHHHhheeeecccchhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCccccccCCCCCCCCCchHHHHhhhchHHHHHccCCChHHHHHHHHHHHHhcCCCCCCccccCCCCCCCCC
Q 006999          479 QYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWRE  558 (622)
Q Consensus       479 Q~~~~gf~PN~P~~lr~p~P~~~kg~~~~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~~~~~  558 (622)
                      ||+|+||+||+|++||+|||+  ||..++++++.+||+++|++||++.||+.+|+++++||+|++||+|||+|+++.|++
T Consensus       723 Qydy~gfvPN~P~~~r~p~P~--~G~~~~~~l~~~pe~~~L~tLP~~~qa~~~m~l~~lLS~h~~de~yLG~~~~~~~~~  800 (864)
T 2iuk_A          723 QYPYGGLILNRPTLARRFIPA--EGTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTT  800 (864)
T ss_dssp             HHHHHTSTTTSCCCCCSCCCC--TTSHHHHHHHHCHHHHHHTTSCCHHHHHHHHHHHHHHTCCCSSCCBTTCCSCTTSCS
T ss_pred             cchhhcccCCCChhhcCCCCC--CCchhHhhhhhChHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcccccccCcccccc
Confidence            999999999999999999995  499999999999999999999999999999999999999999999999999889999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCcCCcceecCCCCCCCCcCCCCccccC
Q 006999          559 DPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPYSISI  622 (622)
Q Consensus       559 d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~~~r~~~~~~pY~~L~Ps~~~g~t~~~IpnSisI  622 (622)
                      |+++++|+++|+++|++||++|++||++++||||+|++++||+||+|+++||||||||||||||
T Consensus       801 d~~~~~a~~~F~~~L~~Ie~~I~~RN~~~~lknR~g~~~lPY~yL~P~s~~g~t~~~IPNSIsI  864 (864)
T 2iuk_A          801 DKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI  864 (864)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGTGGGTCCCCTTCSCCCSSSCSCCCBSSCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCCCCCCceeeCCCCCCCcccCCCCCcccC
Confidence            9999999999999999999999999999999999999999999999999999999999999998
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Back     alignment and structure
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 622
d3bnea1690 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal dom 0.0
d2p0ma1551 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Ory 0.0
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 690 Back     information, alignment and structure

class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

 Score =  767 bits (1983), Expect = 0.0
 Identities = 277/621 (44%), Positives = 382/621 (61%), Gaps = 15/621 (2%)

Query: 8   DQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFV--DPDLGFPYFS 65
           D  +EK+   FYVPRDE    +K          S+   + P+ E+AF      + F  F 
Sbjct: 79  DPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQ 138

Query: 66  AIDALFNEGVNLPPLKQEGFWNTL-LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDE 124
            +  L+  G+ LP   ++     + LP + +     G +IL F  P  +   +  W  DE
Sbjct: 139 DVHDLYEGGIKLP---RDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDE 195

Query: 125 EFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQ 184
           EF+R+ +AG+NP  IR + E+P KS LDP IYG   S IT + ++ +     +++EA+  
Sbjct: 196 EFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSLDLD---GYTMDEALGS 252

Query: 185 KKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNG--KP 242
           ++LF+LDYHD+F+PYV ++ QL S   Y +RTI FL   GTL+P+AIEL+ P   G    
Sbjct: 253 RRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSA 312

Query: 243 QWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVM 302
              QV LP+    E  +W LAKA+V+ +D+ YHQL+SHWL TH   EP+VIAT+R LSV+
Sbjct: 313 AVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVL 372

Query: 303 HPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEA 362
           HPIY+LL PH+R  M IN LARQ+L+NA+GI E++F P KYS+E SS  Y K W F  +A
Sbjct: 373 HPIYKLLTPHYRNNMNINALARQSLINANGIAETTFLPSKYSVEMSSAVY-KNWVFTDQA 431

Query: 363 LPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVE 422
           LP DLI RG+A++DPS PHG++L IEDYP+A DGL++W AIK WV +YV  YY     V+
Sbjct: 432 LPADLIKRGVAIKDPSTPHGVRLLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVK 491

Query: 423 SDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTY 482
           +D ELQ WW E    GHGD K +PWWP L+T +DL+E+   I+W+ S  HAAVNFGQY Y
Sbjct: 492 NDSELQHWWKEAVEKGHGDLKDKPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPY 551

Query: 483 GGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHS 542
           GG   NRPT +R  +        +++  +   E A L T  S++     ++++++LSTH+
Sbjct: 552 GGLIMNRPTASRRLLPE--KGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHA 609

Query: 543 PDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLR-NRNGAGMVPYE 601
            DE YLG+   P W  D     AF+KF  KL E+E  +  RN DP L+ NR G   +PY 
Sbjct: 610 SDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYT 669

Query: 602 LLKPFSEPGVTGKGVPYSISI 622
           LL P SE G+T +G+P SISI
Sbjct: 670 LLYPSSEEGLTFRGIPNSISI 690
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 551 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query622
d3bnea1690 Lipoxigenase, C-terminal domain {Soybean (Glycine 100.0
d2p0ma1551 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T 100.0
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

Probab=100.00  E-value=2.3e-177  Score=1484.69  Aligned_cols=610  Identities=45%  Similarity=0.830  Sum_probs=583.0

Q ss_pred             ccccCCCCCCCCCCCccCCCCCcChhhhhhhhhhHHHHHHHhhhhhhhhhcc--CCCCCCCCHHHHHHHHhcCCCCCCcc
Q 006999            4 LMHADQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFV--DPDLGFPYFSAIDALFNEGVNLPPLK   81 (622)
Q Consensus         4 ~~~~~~~~e~~~~~~ylP~de~f~~~k~~~f~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~d~~~ly~~~~~~~~~~   81 (622)
                      -|+|||++|||...+||||||+|++.|.++|.++++|+++|.++|.++++++  .+..+|+||+||++||++|+++|.+.
T Consensus        75 ~~~~dp~~e~r~~~~yvPrde~f~~~k~~~f~~~~~~~~~~~~~p~~~~~~~~~~~~~~f~~f~~i~~ly~~g~~~~~~~  154 (690)
T d3bnea1          75 PTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDV  154 (690)
T ss_dssp             BCSSCTTSBCCCSSCCCCGGGSCCCSSGGGCHHHHHHHHHHTHHHHHHHHHHTTSSCSSCCSHHHHHGGGTTCEECCHHH
T ss_pred             CCCCCCCcccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccCchhh
Confidence            4789999999999999999999999999999999999999999999999864  34678999999999999999887542


Q ss_pred             ccchhhhh-hHHHHHHhhhcCccccccCCcccccccccCccccHHHHHHHhhCCCcccccccccCCCCCCCCCCcCCCCC
Q 006999           82 QEGFWNTL-LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPE  160 (622)
Q Consensus        82 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~W~~D~~Fg~Q~LaG~NP~~I~r~~~~P~~~~l~~~~~g~~~  160 (622)
                         +.+.. ++.+.+.++++++.++|||+|+|+++|+++|++|++||||+|||+||++||||+++|++++|+++.||++.
T Consensus       155 ---~~~~~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~W~~D~eFarQ~LaG~NP~~Irr~~e~P~~~~l~~~~~g~~~  231 (690)
T d3bnea1         155 ---ISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQS  231 (690)
T ss_dssp             ---HHHHTTSTTGGGGCEECSSSEEECCCCGGGSSCSSGGGSHHHHHHHHHHSSSTTCCEECCSSSCCCCSCHHHHCCCC
T ss_pred             ---hhhcccHHHHHHHhhccccceeecCCchhhhccccccccHHHHHHHHhcCCCchheeeccccCCcCCCCHHHhCchh
Confidence               22221 44577788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhhCCcccHHHHHhcCcEEEecccccccchhhhhccCCCccccccceEEeeCCCCceeeEEEEecCCCCCC
Q 006999          161 SAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNG  240 (622)
Q Consensus       161 ~~vt~~~i~~~l~g~~tl~~al~~grLFi~Dy~~~~lp~~~~~n~~~g~~~yA~~~Lf~l~~~g~L~PiAIqL~~~~~~~  240 (622)
                      +.||.++++  ++| +||++||++|||||+|||++++|++.++|...+++.|||+||||++++|+|+||||||++++..+
T Consensus       232 s~it~~~i~--l~G-~Tl~~Al~~grLFi~Dy~dl~~~~~~~i~~~~~~~~~A~~~Lffl~~dG~L~PiAIqL~~~~~~~  308 (690)
T d3bnea1         232 SKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAG  308 (690)
T ss_dssp             CCCCGGGCC--CTT-CCHHHHHHTTCEEEEECHHHHHHHHHHHHTSTTCCCCEEEEEEEECTTSCEEEEEEEEECCCCTT
T ss_pred             hhhhHhhhc--cCc-cHHHHHHHcCCEEEEechhhhccccccccCcCCceeecchhheeECCCCCcccEEEEecCCCCCc
Confidence            999999884  677 99999999999999999999899999999999999999999999999999999999999987544


Q ss_pred             C--CCCceeeeCCCCCCCchHHHHHHHHHHhhhhhhHHHHHhhhhhccchhHHHHHHhccCCccCchhhccccchhhhcc
Q 006999          241 K--PQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTME  318 (622)
Q Consensus       241 ~--~~~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~Hqli~Hll~THlv~Epf~vAt~R~Ls~~HPv~kLL~PH~r~tl~  318 (622)
                      +  ++.++||||+|++.++|.|+|||+||++||+++||+++||++||+++|||||||+||||.+|||||||.||||+||+
T Consensus       309 ~~~~~~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~HqlvsHll~THlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~Tl~  388 (690)
T d3bnea1         309 DLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMN  388 (690)
T ss_dssp             CCCCCCCEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHSCTTCHHHHHHGGGGTTHHH
T ss_pred             ccCCCCCceeCCCCCCccchHHHHHHHHHHHhhHHHHHHHHhhhhhhhHHHHHHHHHHhcCCccCCHHHhcchhhhhhHH
Confidence            3  56789999999766689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHhcccCCCccccccCCCChhHHHHHHHHhcccCCCCccCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHH
Q 006999          319 INGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLD  398 (622)
Q Consensus       319 IN~~Ar~~Li~~gG~id~~~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~RG~~~~d~~~~~g~~~~lp~YpYrdDgl~  398 (622)
                      ||++||++||++||++++++++|+++++|++++|++ |+|++++||+||++|||+++|+++|||+++.|||||||||||+
T Consensus       389 IN~~AR~~LI~~gGiie~~~~~~~~~~el~~~ayk~-w~f~~~~lP~dL~~RGv~~~d~~~p~g~~l~ipdYPYrdDgL~  467 (690)
T d3bnea1         389 INALARQSLINANGIAETTFLPSKYSVEMSSAVYKN-WVFTDQALPADLIKRGVAIKDPSTPHGVRLLIEDYPYAADGLE  467 (690)
T ss_dssp             HHHHHHHHTSSTTSHHHHHSTTGGGHHHHHHHHHTT-CCGGGGSHHHHHHHTTSEEECTTSTTSEEESSSSCHHHHHHHH
T ss_pred             HHHHHHHhccCCCCeeeecccCchhHHHHHHHHHhc-CcccccCCHHHHHHcCCCcccccccccccccCCCCchhhhHHH
Confidence            999999999999999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCccccccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhHhhhcccccccccccc
Q 006999          399 LWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFG  478 (622)
Q Consensus       399 iW~aI~~fV~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~p~~~t~~~Lv~~lT~iIf~aS~qHAAVNfg  478 (622)
                      ||+||++||++||++||++|++|++|.|||+||+||+++||+++++.+|||+|+|+++||++||+|||+||+||||||||
T Consensus       468 iW~AI~~~V~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~kd~~~~p~l~T~~eLv~~lT~iIf~aSaqHAAVNfg  547 (690)
T d3bnea1         468 IWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKDKPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFG  547 (690)
T ss_dssp             HHHHHHHHHHHHGGGTCSSHHHHHTCHHHHHHHHHHHHTTTGGGTTCTTSCCCCSHHHHHHHHHHHHHHHTHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhhccCCccccccCHHHHHHHHHHhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHhhccHHHhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCccccccCCCCCCCCCchHHHHhhhchHHHHHccCCChHHHHHHHHHHHHhcCCCCCCccccCCCCCCCCC
Q 006999          479 QYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWRE  558 (622)
Q Consensus       479 Q~~~~gf~PN~P~~lr~p~P~~~kg~~~~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~~~~~  558 (622)
                      ||+|+||+||+|++||+++|++  |.+++++++.+|++++|++||++.||+.+|+++++||+|+.||+|||+|+++.|+.
T Consensus       548 Qy~y~gfvPN~P~~~r~~~P~~--~~~~~~~~~~~~e~~~L~tLP~~~qa~~~~~~~~~LS~~~~de~yLG~~~~~~~~~  625 (690)
T d3bnea1         548 QYPYGGLIMNRPTASRRLLPEK--GTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTS  625 (690)
T ss_dssp             HHHHHSSTTTSCCCBCCCCCCT--TSHHHHHHHHCHHHHHHHHBCCHHHHHHHHHHHHHHTCBCTTCCBTTCCSCTTSCS
T ss_pred             cccccCcCCCCChHhcCCCCCC--CChhhhhhhhchHHHHHHhCCcHHHHHHHHHHHHHhccCCCCcccCCCCCCccccc
Confidence            9999999999999999999987  88889999999999999999999999999999999999999999999999889999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc-ccCCCCcCCcceecCCCCCCCCcCCCCccccC
Q 006999          559 DPVINAAFEKFRGKLMELEGIIDARNADPKLR-NRNGAGMVPYELLKPFSEPGVTGKGVPYSISI  622 (622)
Q Consensus       559 d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~~-~r~~~~~~pY~~L~Ps~~~g~t~~~IpnSisI  622 (622)
                      |+++++|+++|+++|++||++|++||+++++| ||+|++++||+||+|+++||||||||||||||
T Consensus       626 D~~~~~a~~~F~~~L~~Ie~~I~~RN~~~~~~~nr~g~~~~PY~~L~Ps~~~g~t~~gIPnSIsI  690 (690)
T d3bnea1         626 DSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI  690 (690)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHTTTTTCCCCTTCSCCCSBSCSCCCBSSCCC
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCCccccCCCCCCCcCcCCCCCcccC
Confidence            99999999999999999999999999999999 99999999999999999999999999999998
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure